Citrus Sinensis ID: 013867
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 435 | ||||||
| 224063175 | 434 | predicted protein [Populus trichocarpa] | 0.963 | 0.965 | 0.607 | 1e-137 | |
| 255581496 | 421 | conserved hypothetical protein [Ricinus | 0.898 | 0.928 | 0.628 | 1e-134 | |
| 225440428 | 434 | PREDICTED: uncharacterized protein LOC10 | 0.875 | 0.877 | 0.626 | 1e-132 | |
| 359481754 | 437 | PREDICTED: uncharacterized protein LOC10 | 0.875 | 0.871 | 0.621 | 1e-130 | |
| 118481187 | 380 | unknown [Populus trichocarpa] | 0.852 | 0.976 | 0.628 | 1e-128 | |
| 297740338 | 381 | unnamed protein product [Vitis vinifera] | 0.852 | 0.973 | 0.627 | 1e-128 | |
| 15241687 | 420 | kinesin light chain-like protein [Arabid | 0.878 | 0.909 | 0.568 | 1e-123 | |
| 21537022 | 420 | unknown [Arabidopsis thaliana] | 0.878 | 0.909 | 0.558 | 1e-119 | |
| 297810309 | 420 | hypothetical protein ARALYDRAFT_486989 [ | 0.878 | 0.909 | 0.553 | 1e-118 | |
| 449440321 | 438 | PREDICTED: uncharacterized protein LOC10 | 0.896 | 0.890 | 0.533 | 1e-112 |
| >gi|224063175|ref|XP_002301027.1| predicted protein [Populus trichocarpa] gi|222842753|gb|EEE80300.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 268/441 (60%), Positives = 326/441 (73%), Gaps = 22/441 (4%)
Query: 5 FKLSRLAT-TVSGINRLPGPTSHEPCLLSASTLPPPRRLVHDANGNGNRINGLNSNPVVL 63
KLSR+AT TV+ RL G TS + LS+S+ P RL+HD I LN+NPV L
Sbjct: 6 LKLSRVATATVARTARL-GLTSIK---LSSSS---PYRLIHDG-----IIKSLNANPVAL 53
Query: 64 QMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQ--LAESWRGISLLAMSTLLYES 121
QMI+YALS A+SQKSDES Q MLVLEQCLS+Q S+ Q + + +G+ LLAMS+LL
Sbjct: 54 QMIDYALSLAKSQKSDESQGQAMLVLEQCLSSQSSENQDVVTHNSKGMVLLAMSSLLSAR 113
Query: 122 GNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181
G+Y +A+EKLQ +++ NS L VRVAAMEAL GL L++G DDTSSV+ADKCL+L K +
Sbjct: 114 GSYNDAMEKLQNIQDLINSHLDVRVAAMEALVGLNLEMGNDDTSSVLADKCLELLGKVEL 173
Query: 182 ENYKTYGAVNS-RANAVKGLVELAHGNLES------GLQEEEGCTGSAALSYGEYLHATR 234
+N V S RA A+KGL EL GNLES G + +GC G+AALSYGE+LHATR
Sbjct: 174 KNSDEGSEVASARAKAIKGLAELVQGNLESAEPFFQGFLDNKGCIGNAALSYGEFLHATR 233
Query: 235 NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE 294
NF LAK FYQKVI+ +A +KDF+D+ L +CNMA EEV LAAT ALGQLE HMGNFG+AE
Sbjct: 234 NFSLAKDFYQKVIQEVANKKDFTDVRALAACNMASEEVLLAATCALGQLEVHMGNFGNAE 293
Query: 295 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354
E LT L + E+LFGS HPKVGVVLTCLALMF++K+ QEHSS+LLIQEGLYRRA+E LKA
Sbjct: 294 ETLTSALNRAEQLFGSRHPKVGVVLTCLALMFQHKSKQEHSSSLLIQEGLYRRAIELLKA 353
Query: 355 PPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLAEA 414
PPL+ E T DI+ALARGGYAE L +Q+NRK EGE+MKRWAEAAWRNR +SL+EA
Sbjct: 354 PPLDLEVNRTMRSGMDIIALARGGYAETLCIQENRKGEGEKMKRWAEAAWRNRSLSLSEA 413
Query: 415 LNFSEPSNKPLVIDARTSRTM 435
L S+ SN+ V+DAR R +
Sbjct: 414 LKISDSSNRMPVVDARICRAL 434
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581496|ref|XP_002531554.1| conserved hypothetical protein [Ricinus communis] gi|223528815|gb|EEF30820.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 256/407 (62%), Positives = 300/407 (73%), Gaps = 16/407 (3%)
Query: 39 PRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS 98
P RL+H+ ING ++PV LQMI+YALS +SQKSDESY Q MLVLEQCLS+Q S
Sbjct: 21 PLRLIHEG------INGPYASPVALQMIDYALSLPKSQKSDESYGQAMLVLEQCLSSQSS 74
Query: 99 DGQ--LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156
+GQ + ++ +G+ LLAMS LL++ N+ EA+EKLQ + + S LGVRVAA+EAL GL
Sbjct: 75 EGQDIVTQNSKGMVLLAMSNLLFQRENHDEAMEKLQGIRDLAPSSLGVRVAAVEALVGLN 134
Query: 157 LQLGQDDTSSVVADKCLQ-LCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES----- 210
L+LG DD SSV+ADKCL+ L K + + A N+RA A KGLVEL GNL S
Sbjct: 135 LELGNDDASSVLADKCLEELLGKDEHDTTGGVEAANARAKAFKGLVELVRGNLGSAESLF 194
Query: 211 -GLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMAL 269
GLQE EGC G+AALSYGE+LHAT+NF +AK YQ V+ +AE+KDFSDM+ L +CNMA
Sbjct: 195 QGLQESEGCVGTAALSYGEFLHATKNFSMAKDLYQNVVAEVAEKKDFSDMHALAACNMAS 254
Query: 270 EEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK 329
EEV LAA ALGQLEAHMG F DAEE LT+ L K E+LFGS HPKVGVVLTCLALMFR K
Sbjct: 255 EEVLLAAICALGQLEAHMGRFNDAEETLTKALNKAEQLFGSRHPKVGVVLTCLALMFRQK 314
Query: 330 AMQEHSSALLIQEGLYRRALEFLKAPPLESEG-VETKVDRTDIVALARGGYAEALSVQQN 388
A+QE SS+LLIQEGLYRRA++ LKAP L+SE V R D+VALARGGYAE L VQQN
Sbjct: 315 AVQEQSSSLLIQEGLYRRAIDLLKAPSLDSEDIVMMGSPRRDVVALARGGYAETLCVQQN 374
Query: 389 RKDEGERMKRWAEAAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM 435
RK EGE+MKRWA AAWRN SL EAL SE SNK VIDAR R M
Sbjct: 375 RKGEGEKMKRWAAAAWRNNSFSLTEALKISESSNKLPVIDARIGRVM 421
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440428|ref|XP_002269770.1| PREDICTED: uncharacterized protein LOC100251163 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 245/391 (62%), Positives = 297/391 (75%), Gaps = 10/391 (2%)
Query: 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS--DGQLAESWRGISLL 112
G N+ PV LQMI+YALSHARS KSDESY+QG+LVLEQCLST + D +++ RG+ LL
Sbjct: 44 GSNATPVALQMIDYALSHARSLKSDESYAQGLLVLEQCLSTHSNEVDDTTSQNSRGMVLL 103
Query: 113 AMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKC 172
AMSTLL E G + +AI+KLQ ++ S LGVRVA+ME L GL LQL +DDTS V+ADKC
Sbjct: 104 AMSTLLSERGAFDDAIDKLQIIQGLAESHLGVRVASMEGLVGLNLQLERDDTSRVLADKC 163
Query: 173 LQLCEKHKPENYKTYGA--VNSRANAVKGLVELAHGNLES------GLQEEEGCTGSAAL 224
+QL + +G+ +N RA A+KGLVEL HGNLES GLQ+E+GCTG+AAL
Sbjct: 164 VQLLGNDTADIGNGFGSKVLNVRAKALKGLVELVHGNLESAESFFQGLQDEKGCTGNAAL 223
Query: 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE 284
SYGE+LH+ F LAK+ YQK IE ++ K+F+D L +C+M+ EV LAAT LGQLE
Sbjct: 224 SYGEFLHSMGKFSLAKELYQKAIEGISANKEFADPYALAACSMSGREVQLAATCDLGQLE 283
Query: 285 AHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGL 344
+GNF +AEEILTR LTKTEE FGSHHP VG+VLTC+ALMFR+KA+ EHSS+LLIQEGL
Sbjct: 284 GQLGNFSEAEEILTRVLTKTEEHFGSHHPNVGIVLTCIALMFRHKAIMEHSSSLLIQEGL 343
Query: 345 YRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAW 404
YRRAL+ LKAP LE+EG + V + DIVALARG YAE L VQQNRKDEGERMK WA+ AW
Sbjct: 344 YRRALDLLKAPSLETEGSKADVAQRDIVALARGAYAEVLCVQQNRKDEGERMKSWAQTAW 403
Query: 405 RNRRVSLAEALNFSEPSNKPLVIDARTSRTM 435
RNRR+SLAEAL SE +K +IDAR SR +
Sbjct: 404 RNRRLSLAEALEMSELCSKVPIIDARISRAL 434
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481754|ref|XP_003632670.1| PREDICTED: uncharacterized protein LOC100251163 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/394 (62%), Positives = 297/394 (75%), Gaps = 13/394 (3%)
Query: 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS--DGQLAESWRGISLL 112
G N+ PV LQMI+YALSHARS KSDESY+QG+LVLEQCLST + D +++ RG+ LL
Sbjct: 44 GSNATPVALQMIDYALSHARSLKSDESYAQGLLVLEQCLSTHSNEVDDTTSQNSRGMVLL 103
Query: 113 AMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKC 172
AMSTLL E G + +AI+KLQ ++ S LGVRVA+ME L GL LQL +DDTS V+ADKC
Sbjct: 104 AMSTLLSERGAFDDAIDKLQIIQGLAESHLGVRVASMEGLVGLNLQLERDDTSRVLADKC 163
Query: 173 LQLCEKHKPENYKTYGA--VNSRANAVKGLVELAHGNLES------GLQEEEGCTGSAAL 224
+QL + +G+ +N RA A+KGLVEL HGNLES GLQ+E+GCTG+AAL
Sbjct: 164 VQLLGNDTADIGNGFGSKVLNVRAKALKGLVELVHGNLESAESFFQGLQDEKGCTGNAAL 223
Query: 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE 284
SYGE+LH+ F LAK+ YQK IE ++ K+F+D L +C+M+ EV LAAT LGQLE
Sbjct: 224 SYGEFLHSMGKFSLAKELYQKAIEGISANKEFADPYALAACSMSGREVQLAATCDLGQLE 283
Query: 285 AHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGL 344
+GNF +AEEILTR LTKTEE FGSHHP VG+VLTC+ALMFR+KA+ EHSS+LLIQEGL
Sbjct: 284 GQLGNFSEAEEILTRVLTKTEEHFGSHHPNVGIVLTCIALMFRHKAIMEHSSSLLIQEGL 343
Query: 345 YRRALEFLKAPPLESEGVE---TKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAE 401
YRRAL+ LKAP LE+EG+ V + DIVALARG YAE L VQQNRKDEGERMK WA+
Sbjct: 344 YRRALDLLKAPSLETEGMGHDLADVAQRDIVALARGAYAEVLCVQQNRKDEGERMKSWAQ 403
Query: 402 AAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM 435
AWRNRR+SLAEAL SE +K +IDAR SR +
Sbjct: 404 TAWRNRRLSLAEALEMSELCSKVPIIDARISRAL 437
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118481187|gb|ABK92545.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 239/380 (62%), Positives = 290/380 (76%), Gaps = 9/380 (2%)
Query: 65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQ--LAESWRGISLLAMSTLLYESG 122
MI+YALS A+SQKSDES Q MLVLEQCLS+Q S+ Q + + +G+ LLAMS+LL G
Sbjct: 1 MIDYALSLAKSQKSDESQGQAMLVLEQCLSSQSSENQDVVTHNSKGMVLLAMSSLLSARG 60
Query: 123 NYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182
+Y +A+EKLQ +++ NS L VRVAAMEAL GL L++G DDTSSV+ADKCL+L K + +
Sbjct: 61 SYNDAMEKLQNIQDLINSHLDVRVAAMEALVGLNLEMGNDDTSSVLADKCLELLGKVELK 120
Query: 183 NYKTYGAVNS-RANAVKGLVELAHGNLES------GLQEEEGCTGSAALSYGEYLHATRN 235
N V S RA A+KGL EL GNLES G + +GC G+AALSYGE+LHATRN
Sbjct: 121 NSDEGSEVASARAKAIKGLAELVQGNLESAEPFFQGFLDNKGCIGNAALSYGEFLHATRN 180
Query: 236 FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE 295
F LAK FYQKVI+ +A +KDF+D+ L +CNMA EEV LAAT ALGQLE HMGNFG+AEE
Sbjct: 181 FSLAKDFYQKVIQEVANKKDFTDVRALAACNMASEEVLLAATCALGQLEVHMGNFGNAEE 240
Query: 296 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355
LT L + E+LFGS HPKVGVVLTCLALMF++K+ QEHSS+LLIQEGLYRRA+E LKAP
Sbjct: 241 TLTSALNRAEQLFGSRHPKVGVVLTCLALMFQHKSKQEHSSSLLIQEGLYRRAIELLKAP 300
Query: 356 PLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLAEAL 415
PL+ E T DI+ALARGGYAE L +Q+NRK EGE+MKRWAEAAWRNR +SL+EAL
Sbjct: 301 PLDLEVNRTMRSGMDIIALARGGYAETLCIQENRKGEGEKMKRWAEAAWRNRSLSLSEAL 360
Query: 416 NFSEPSNKPLVIDARTSRTM 435
S+ SN+ V+DAR R +
Sbjct: 361 KISDSSNRMPVVDARICRAL 380
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740338|emb|CBI30520.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 239/381 (62%), Positives = 290/381 (76%), Gaps = 10/381 (2%)
Query: 65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPS--DGQLAESWRGISLLAMSTLLYESG 122
MI+YALSHARS KSDESY+QG+LVLEQCLST + D +++ RG+ LLAMSTLL E G
Sbjct: 1 MIDYALSHARSLKSDESYAQGLLVLEQCLSTHSNEVDDTTSQNSRGMVLLAMSTLLSERG 60
Query: 123 NYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182
+ +AI+KLQ ++ S LGVRVA+ME L GL LQL +DDTS V+ADKC+QL +
Sbjct: 61 AFDDAIDKLQIIQGLAESHLGVRVASMEGLVGLNLQLERDDTSRVLADKCVQLLGNDTAD 120
Query: 183 NYKTYGA--VNSRANAVKGLVELAHGNLES------GLQEEEGCTGSAALSYGEYLHATR 234
+G+ +N RA A+KGLVEL HGNLES GLQ+E+GCTG+AALSYGE+LH+
Sbjct: 121 IGNGFGSKVLNVRAKALKGLVELVHGNLESAESFFQGLQDEKGCTGNAALSYGEFLHSMG 180
Query: 235 NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE 294
F LAK+ YQK IE ++ K+F+D L +C+M+ EV LAAT LGQLE +GNF +AE
Sbjct: 181 KFSLAKELYQKAIEGISANKEFADPYALAACSMSGREVQLAATCDLGQLEGQLGNFSEAE 240
Query: 295 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354
EILTR LTKTEE FGSHHP VG+VLTC+ALMFR+KA+ EHSS+LLIQEGLYRRAL+ LKA
Sbjct: 241 EILTRVLTKTEEHFGSHHPNVGIVLTCIALMFRHKAIMEHSSSLLIQEGLYRRALDLLKA 300
Query: 355 PPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLAEA 414
P LE+EG + V + DIVALARG YAE L VQQNRKDEGERMK WA+ AWRNRR+SLAEA
Sbjct: 301 PSLETEGSKADVAQRDIVALARGAYAEVLCVQQNRKDEGERMKSWAQTAWRNRRLSLAEA 360
Query: 415 LNFSEPSNKPLVIDARTSRTM 435
L SE +K +IDAR SR +
Sbjct: 361 LEMSELCSKVPIIDARISRAL 381
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241687|ref|NP_195833.1| kinesin light chain-like protein [Arabidopsis thaliana] gi|7340687|emb|CAB82986.1| putative protein [Arabidopsis thaliana] gi|98961125|gb|ABF59046.1| At5g02130 [Arabidopsis thaliana] gi|332003051|gb|AED90434.1| kinesin light chain-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 229/403 (56%), Positives = 294/403 (72%), Gaps = 21/403 (5%)
Query: 39 PRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS 98
P RL+H I+ N+N V +QM+NYALSHARSQKSDESY+QGMLVLEQCL QP+
Sbjct: 33 PLRLIH------GEISVPNANHVAIQMVNYALSHARSQKSDESYAQGMLVLEQCLGNQPN 86
Query: 99 DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158
D Q++ + LLAMS LLYESGN EAIE+L++V +S L +RV A+EAL GL +Q
Sbjct: 87 DDQVSHDSKATVLLAMSDLLYESGNSSEAIERLKQVMTLTHSSLAIRVVAVEALVGLLIQ 146
Query: 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES------GL 212
GQDD S VAD+ L+L ++ EN + V + A+KGL EL GN+ES GL
Sbjct: 147 SGQDDASLDVADEFLKLVKESGHENLQ---GVVATVKAIKGLAELVKGNIESAESLFRGL 203
Query: 213 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV 272
+ E C G+ ALSYGEYLHAT NF LAK+ YQK I+ + E K+ ++ SCNM L+ V
Sbjct: 204 ENHESCKGNIALSYGEYLHATGNFELAKEMYQKAIQGVTETKE-----SMCSCNMNLKAV 258
Query: 273 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 332
+LAATFALGQLE+H+GNFG AE+ LT LTKTEE +G +HPKVGV+LT +ALM+ NKA Q
Sbjct: 259 SLAATFALGQLESHIGNFGVAEKTLTDALTKTEEHYGDNHPKVGVILTAVALMYGNKAKQ 318
Query: 333 EHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE 392
E SS++LIQEGLYR+ALE +KAPPL+S+G+ ++ +++ALAR GYAE L +Q+NRK E
Sbjct: 319 ERSSSILIQEGLYRKALELMKAPPLDSKGI-INMENQEVIALARAGYAELLLIQENRKSE 377
Query: 393 GERMKRWAEAAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM 435
GE+MK WAE+AWRN+R+SL+EAL SEP K +IDART+R +
Sbjct: 378 GEKMKSWAESAWRNKRISLSEALTLSEPLGKVAIIDARTTRVL 420
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21537022|gb|AAM61363.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 225/403 (55%), Positives = 290/403 (71%), Gaps = 21/403 (5%)
Query: 39 PRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS 98
P RL+H I+ N+N V +QM+NYALSHARSQKSDESY+QGMLVLEQC QP+
Sbjct: 33 PLRLIH------GEISVPNANHVAIQMVNYALSHARSQKSDESYAQGMLVLEQCFGNQPN 86
Query: 99 DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158
D ++ + LLAMS LLYESGN EA E+L++V +S L +RV A+EAL GL +Q
Sbjct: 87 DDDVSHDSKATVLLAMSDLLYESGNSSEASERLKQVMTLTHSSLAIRVVAVEALVGLLMQ 146
Query: 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES------GL 212
GQDD S VAD+ L+L ++ EN + V + A A+KGL EL GN+ES GL
Sbjct: 147 SGQDDASLDVADEFLELVKESGHENLQD---VIAAAKAIKGLAELVKGNIESAESLFRGL 203
Query: 213 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV 272
+ + C G+ ALSYGEYLHAT NF LAK+ YQK I+ + E K+ ++ SCNM L+ V
Sbjct: 204 ENHDSCKGNIALSYGEYLHATGNFELAKEMYQKAIQGVRETKE-----SMCSCNMNLKAV 258
Query: 273 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 332
+LAATFALGQLE+H+GNFG AE+ LT LT TEE G +HPKVGV+LT +ALM+ NKA Q
Sbjct: 259 SLAATFALGQLESHIGNFGVAEKTLTDALTNTEEHHGDNHPKVGVILTAVALMYGNKAKQ 318
Query: 333 EHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE 392
E SS++LIQEGLYR+ALE +KAPPL+S+G+ ++ +++ALAR GYAE L +Q+NRK E
Sbjct: 319 ERSSSILIQEGLYRKALELMKAPPLDSKGI-INMENQEVIALARAGYAELLLIQENRKSE 377
Query: 393 GERMKRWAEAAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM 435
GE+MK WAE+AWRN+R+SL+EAL SEP K +IDART+R +
Sbjct: 378 GEKMKSWAESAWRNKRISLSEALTLSEPLGKVAIIDARTTRVL 420
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810309|ref|XP_002873038.1| hypothetical protein ARALYDRAFT_486989 [Arabidopsis lyrata subsp. lyrata] gi|297318875|gb|EFH49297.1| hypothetical protein ARALYDRAFT_486989 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/403 (55%), Positives = 289/403 (71%), Gaps = 21/403 (5%)
Query: 39 PRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS 98
P RL+H I+ N+N V +QM+NYALSHARSQKSDESY+QGMLVLEQCL QP+
Sbjct: 33 PLRLIH------GEISVPNANHVAIQMVNYALSHARSQKSDESYAQGMLVLEQCLENQPN 86
Query: 99 DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158
D Q++ + LLAMS LLYESGN EAIE+L++V +S L +RV A+EAL GL +Q
Sbjct: 87 DDQVSHDSKATVLLAMSDLLYESGNSSEAIERLKQVMTLTHSSLAIRVVAVEALVGLLIQ 146
Query: 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES------GL 212
GQDD S VAD+ L+L ++ EN + V + A A+KGL EL GN+ES GL
Sbjct: 147 SGQDDASLDVADEFLELVKESGHENLQD---VVATAKAIKGLAELVKGNIESAESLFRGL 203
Query: 213 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV 272
+ E C G+ ALSYGE+LHAT NF LAK+ Y I+ + E K ++ SCNM L+ V
Sbjct: 204 ENHESCKGNIALSYGEFLHATGNFELAKEMYHMAIQGVTETKV-----SMCSCNMNLKAV 258
Query: 273 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 332
+LAATFALGQLE+H+GNFG AE+ LT LT EE +G++HPKVGV+LT +ALM+ NKA Q
Sbjct: 259 SLAATFALGQLESHIGNFGVAEKTLTDALTNAEEHYGNNHPKVGVILTAVALMYGNKAKQ 318
Query: 333 EHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE 392
E SS++LIQEGL+R+ALE +KAPPL+SEG+ ++ ++ALAR GYAE L +Q+NRK E
Sbjct: 319 ERSSSILIQEGLFRKALELMKAPPLDSEGI-INMENQGVMALARAGYAELLLIQENRKSE 377
Query: 393 GERMKRWAEAAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM 435
GE+MK WA +AWRN+R+SL+EA+ SEP K +IDART+R +
Sbjct: 378 GEKMKSWAASAWRNKRISLSEAMTLSEPLGKVAIIDARTTRVL 420
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440321|ref|XP_004137933.1| PREDICTED: uncharacterized protein LOC101204931 [Cucumis sativus] gi|449483653|ref|XP_004156650.1| PREDICTED: uncharacterized protein LOC101224842 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/403 (53%), Positives = 284/403 (70%), Gaps = 13/403 (3%)
Query: 39 PRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS 98
P RL+H ++ N++PV QMINY LSHARSQ+S ESY+QG+LVLEQCLS Q S
Sbjct: 43 PWRLLHVG------MDRPNASPVTRQMINYGLSHARSQRSGESYAQGLLVLEQCLSAQSS 96
Query: 99 DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158
+G+ A++ RG LLAMSTLL E G+ +AI+KLQ++E+ + L +RVAA+EALAGL+L+
Sbjct: 97 EGEDADNSRGAVLLAMSTLLAERGDIHDAIDKLQRIEDLAHCSLDIRVAALEALAGLHLE 156
Query: 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES------GL 212
L +D+SS +ADKCLQL E + + + +R AVKGLVEL NL + G
Sbjct: 157 LDLNDSSSAIADKCLQLFETSELADDGDSEVLRARVKAVKGLVELVQNNLGAAESLFEGF 216
Query: 213 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV 272
Q E C GSAA +YGE+L A++NF AK+ Y++VIEV +E KD S+ L NM+ +V
Sbjct: 217 QTIERCAGSAAFTYGEFLVASQNFSSAKEVYKRVIEVGSEVKDSSEQCALAGGNMSPMDV 276
Query: 273 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 332
+AAT ALGQLE ++GNF +AE++LT LTKTEE FGSHHPKVGV+LTC+ALMFR+KAM+
Sbjct: 277 LVAATCALGQLEGNLGNFSEAEDLLTNALTKTEEYFGSHHPKVGVILTCIALMFRHKAMK 336
Query: 333 EHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE 392
EHSS++LIQEGLYRRA++ +K P E G ++KV R DI A+A YAE L VQ+NRK E
Sbjct: 337 EHSSSILIQEGLYRRAIDLMKVSP-EDRGGQSKVHRCDIAAIAGEAYAEILDVQKNRKPE 395
Query: 393 GERMKRWAEAAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM 435
+ ++ W AWRN R+SL E L+ +P +K VID R R +
Sbjct: 396 AQIVRSWVRGAWRNGRISLEEVLDIGQPPSKVPVIDTRICRLI 438
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 435 | ||||||
| TAIR|locus:2185208 | 420 | NDP1 "AT5G02130" [Arabidopsis | 0.878 | 0.909 | 0.570 | 7.6e-112 |
| TAIR|locus:2185208 NDP1 "AT5G02130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 230/403 (57%), Positives = 295/403 (73%)
Query: 39 PRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS 98
P RL+H I+ N+N V +QM+NYALSHARSQKSDESY+QGMLVLEQCL QP+
Sbjct: 33 PLRLIH------GEISVPNANHVAIQMVNYALSHARSQKSDESYAQGMLVLEQCLGNQPN 86
Query: 99 DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158
D Q++ + LLAMS LLYESGN EAIE+L++V +S L +RV A+EAL GL +Q
Sbjct: 87 DDQVSHDSKATVLLAMSDLLYESGNSSEAIERLKQVMTLTHSSLAIRVVAVEALVGLLIQ 146
Query: 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES------GL 212
GQDD S VAD+ L+L ++ EN + G V + A+KGL EL GN+ES GL
Sbjct: 147 SGQDDASLDVADEFLKLVKESGHENLQ--GVV-ATVKAIKGLAELVKGNIESAESLFRGL 203
Query: 213 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV 272
+ E C G+ ALSYGEYLHAT NF LAK+ YQK I+ + E K+ ++ SCNM L+ V
Sbjct: 204 ENHESCKGNIALSYGEYLHATGNFELAKEMYQKAIQGVTETKE-----SMCSCNMNLKAV 258
Query: 273 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 332
+LAATFALGQLE+H+GNFG AE+ LT LTKTEE +G +HPKVGV+LT +ALM+ NKA Q
Sbjct: 259 SLAATFALGQLESHIGNFGVAEKTLTDALTKTEEHYGDNHPKVGVILTAVALMYGNKAKQ 318
Query: 333 EHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE 392
E SS++LIQEGLYR+ALE +KAPPL+S+G+ ++ +++ALAR GYAE L +Q+NRK E
Sbjct: 319 ERSSSILIQEGLYRKALELMKAPPLDSKGI-INMENQEVIALARAGYAELLLIQENRKSE 377
Query: 393 GERMKRWAEAAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM 435
GE+MK WAE+AWRN+R+SL+EAL SEP K +IDART+R +
Sbjct: 378 GEKMKSWAESAWRNKRISLSEALTLSEPLGKVAIIDARTTRVL 420
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.130 0.365 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 435 435 0.00087 118 3 11 23 0.43 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 614 (65 KB)
Total size of DFA: 249 KB (2134 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 38.13u 0.13s 38.26t Elapsed: 00:00:01
Total cpu time: 38.13u 0.13s 38.26t Elapsed: 00:00:01
Start: Mon May 20 18:41:32 2013 End: Mon May 20 18:41:33 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 435 | |||
| pfam12569 | 516 | pfam12569, NARP1, NMDA receptor-regulated protein | 5e-04 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.002 |
| >gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1 | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 5e-04
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVAD 170
LL ++L+ ESG+ EA+E L++ E I+ R+A ME A L L+LG+ + A+
Sbjct: 7 LLYKNSLIEESGDLEEALEHLEEKE---KQIVD-RLAVMEMRADLLLKLGRKEE----AE 58
Query: 171 KCLQLCEKHKPENYKTY 187
+ PENY Y
Sbjct: 59 ATYRALLDRNPENYDYY 75
|
This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.002
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 274 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQE 333
AA L + +G++ +A E+L + L + G HP+ L LA ++ A+ +
Sbjct: 5 AAALNNLALVLRRLGDYDEALELLEKAL-ELARELGEDHPETARALNNLARLYL--ALGD 61
Query: 334 HSSALLIQEGLYRRALEFLKA 354
+ AL +AL +A
Sbjct: 62 YDEALE----YLEKALALREA 78
|
Length = 78 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 435 | |||
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 100.0 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.77 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.74 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.71 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.68 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.67 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.62 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.62 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.62 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.61 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.6 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.58 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 99.56 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.56 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.47 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.46 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.45 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 99.43 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.41 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.38 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.33 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.32 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.31 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.31 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.3 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.25 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.2 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.18 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.17 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.15 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.13 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.1 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 99.09 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.06 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.05 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.03 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.03 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.02 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 98.99 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.98 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.98 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.96 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.94 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.94 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.93 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.91 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.9 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 98.9 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.87 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.85 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.85 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.83 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.81 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.79 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.78 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.78 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.77 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.76 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.75 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.73 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.71 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.7 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.68 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.61 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.6 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 98.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.59 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 98.57 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.55 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.54 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.51 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.51 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.5 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.48 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.46 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.46 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.45 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.41 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.41 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.41 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.39 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.36 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.33 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.32 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.32 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.32 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 98.27 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.26 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.26 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.26 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.24 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.23 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 98.22 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.22 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.17 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.16 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.16 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.15 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.14 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.13 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.12 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.11 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.1 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.08 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.08 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.07 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.05 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.03 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.02 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.92 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.91 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.87 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 97.83 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.83 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.79 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.79 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.77 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 97.76 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.75 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 97.73 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.7 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.69 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.67 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.64 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.63 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.62 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.62 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.61 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.61 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.6 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.6 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.58 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.55 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.55 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.55 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.55 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.52 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.52 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.51 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.44 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.39 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.33 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.32 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.29 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.27 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.26 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.23 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.22 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.17 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.16 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.14 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.1 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.07 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.05 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.05 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 96.91 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 96.89 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.88 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.86 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.84 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 96.84 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 96.82 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.82 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 96.8 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 96.78 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.72 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 96.69 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 96.66 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.59 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 96.58 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.56 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.54 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.48 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 96.46 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.46 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.39 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 96.33 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 96.32 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 96.31 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.29 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.29 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.25 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 96.24 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 96.24 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.19 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.17 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.14 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.03 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.02 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.0 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.94 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 95.83 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 95.8 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 95.61 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 95.59 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.59 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 95.57 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.56 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.53 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 95.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 95.48 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 95.48 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.48 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.45 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.42 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 95.36 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.36 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 95.18 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 95.12 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 95.07 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.02 | |
| PF09311 | 181 | Rab5-bind: Rabaptin-like protein; InterPro: IPR015 | 94.92 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 94.92 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.82 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.61 | |
| KOG0508 | 615 | consensus Ankyrin repeat protein [General function | 94.44 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.37 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 94.36 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 94.33 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 94.24 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.01 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 93.99 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 93.98 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.88 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 93.79 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.67 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 93.48 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.42 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.29 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 93.25 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 93.05 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 92.92 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 92.81 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 92.79 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 92.73 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.27 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 92.25 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.17 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 91.8 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 91.74 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.56 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.0 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 90.54 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 89.9 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 89.88 | |
| PF10952 | 140 | DUF2753: Protein of unknown function (DUF2753); In | 89.51 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 89.41 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 89.24 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 88.86 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 88.49 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 88.08 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 87.99 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 87.92 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 86.9 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 86.8 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 86.75 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 86.5 | |
| PF09311 | 181 | Rab5-bind: Rabaptin-like protein; InterPro: IPR015 | 86.22 | |
| smart00101 | 244 | 14_3_3 14-3-3 homologues. 14-3-3 homologues mediat | 85.41 | |
| KOG0508 | 615 | consensus Ankyrin repeat protein [General function | 84.26 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 82.6 | |
| PF10952 | 140 | DUF2753: Protein of unknown function (DUF2753); In | 82.2 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 80.69 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 80.45 |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-33 Score=290.83 Aligned_cols=297 Identities=20% Similarity=0.239 Sum_probs=243.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 54 NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 54 ~g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~r 133 (435)
+|.++|.+.-...++|..+. .+|+|++|++++++|+.+.++..|.+||.+++.++++|.+|.++++|++|+.+|++
T Consensus 191 ~~~~~P~~~~~~~~La~~y~----~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~ 266 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYA----VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE 266 (508)
T ss_pred cccCCchHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 58889999999999999984 47999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHH---HHH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCc
Q 013867 134 VENFKNSILGV---RVA-AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLE 209 (435)
Q Consensus 134 al~i~e~~L~i---~va-ale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~ 209 (435)
|++|+++.+|. .|+ ++++|+-+|..+|. |.+|++...++.-|.. ..+|-.|
T Consensus 267 AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GK----------------------f~EA~~~~e~Al~I~~--~~~~~~~- 321 (508)
T KOG1840|consen 267 ALTIREEVFGEDHPAVAATLNNLAVLYYKQGK----------------------FAEAEEYCERALEIYE--KLLGASH- 321 (508)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCC----------------------hHHHHHHHHHHHHHHH--HhhccCh-
Confidence 99999988874 233 45555555544444 4455554444444433 3344443
Q ss_pred ccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHH-HHHHHHHHHHHcC
Q 013867 210 SGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-ATFALGQLEAHMG 288 (435)
Q Consensus 210 ~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~-~l~nLa~ly~~qG 288 (435)
+.+.....+++.++..+++|++|+.+|++++.|+.+ .+| ++|+.++ ..+|||.+|..||
T Consensus 322 -------~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~--------~~g-----~~~~~~a~~~~nl~~l~~~~g 381 (508)
T KOG1840|consen 322 -------PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD--------APG-----EDNVNLAKIYANLAELYLKMG 381 (508)
T ss_pred -------HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh--------hcc-----ccchHHHHHHHHHHHHHHHhc
Confidence 456677788899999999999999999999999763 344 3344455 5689999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhcc
Q 013867 289 NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDR 368 (435)
Q Consensus 289 ~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~n 368 (435)
||+||+++|++|++|.++.+|..|+.|+..+++||..|.+.+++++| +.||.+++.|++..|++||++-..+.|
T Consensus 382 k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a------~~l~~~~~~i~~~~g~~~~~~~~~~~n 455 (508)
T KOG1840|consen 382 KYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEA------EQLFEEAKDIMKLCGPDHPDVTYTYLN 455 (508)
T ss_pred chhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchH------HHHHHHHHHHHHHhCCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999888886655 999999999998889999999999999
Q ss_pred HHHHHHHhcCHHHHhhHhhhhhhHHHHHHHHHHHHhcccchhHH
Q 013867 369 TDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLA 412 (435)
Q Consensus 369 la~~~~a~G~yaeal~~~~~r~~eae~~~~~a~~~~~~~r~~l~ 412 (435)
|+.+|.++|+|+.|..+. +++.+|.+.-..+...+..
T Consensus 456 L~~~Y~~~g~~e~a~~~~-------~~~~~~~~~~~~~~~~~~~ 492 (508)
T KOG1840|consen 456 LAALYRAQGNYEAAEELE-------EKVLNAREQRLGTASPTVE 492 (508)
T ss_pred HHHHHHHcccHHHHHHHH-------HHHHHHHHHcCCCCCcchh
Confidence 999999999999887765 3455555444444443333
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-31 Score=276.64 Aligned_cols=259 Identities=19% Similarity=0.218 Sum_probs=209.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 54 NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 54 ~g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~r 133 (435)
.|-+||.|+.-+.++|..| + ++++|++|+.+|+++|+|.++.+|++||.||.+++|||.+|..+|||+||++++++
T Consensus 233 ~G~~hl~va~~l~~~a~~y-~---~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~ 308 (508)
T KOG1840|consen 233 SGLKHLVVASMLNILALVY-R---SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCER 308 (508)
T ss_pred cCccCHHHHHHHHHHHHHH-H---HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 3799999999999999999 4 57899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccc
Q 013867 134 VENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQ 213 (435)
Q Consensus 134 al~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~ 213 (435)
|+.|.++.++.. |+... ........+..... .|+++.. ...+++++.....|.+|
T Consensus 309 Al~I~~~~~~~~--------------~~~v~--~~l~~~~~~~~~~~--~~Eea~~--l~q~al~i~~~~~g~~~----- 363 (508)
T KOG1840|consen 309 ALEIYEKLLGAS--------------HPEVA--AQLSELAAILQSMN--EYEEAKK--LLQKALKIYLDAPGEDN----- 363 (508)
T ss_pred HHHHHHHhhccC--------------hHHHH--HHHHHHHHHHHHhc--chhHHHH--HHHHHHHHHHhhccccc-----
Confidence 999998855431 22211 11122233333333 2554444 44566666555555543
Q ss_pred ccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH
Q 013867 214 EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 214 ~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA 293 (435)
++++..-.+||++|+.+|+|+||+++|++|+.|.++..+ ..++.+| ..+++||..|...++|.+|
T Consensus 364 ---~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~-~~~~~~~-----------~~l~~la~~~~~~k~~~~a 428 (508)
T KOG1840|consen 364 ---VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG-KKDYGVG-----------KPLNQLAEAYEELKKYEEA 428 (508)
T ss_pred ---hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc-CcChhhh-----------HHHHHHHHHHHHhcccchH
Confidence 567788889999999999999999999999999765443 1222222 4689999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc-CCCCCCCchh
Q 013867 294 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGVE 363 (435)
Q Consensus 294 e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k-~~~~~hp~~a 363 (435)
+.+|.++..|. +.+|++||+|-.++-|||-+|..||+||+| +.+-.+++.+++ ..|..+|.+.
T Consensus 429 ~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a------~~~~~~~~~~~~~~~~~~~~~~~ 492 (508)
T KOG1840|consen 429 EQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAA------EELEEKVLNAREQRLGTASPTVE 492 (508)
T ss_pred HHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHH------HHHHHHHHHHHHHcCCCCCcchh
Confidence 99999999999 999999999999999999999999999887 899999999995 5677777633
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=211.50 Aligned_cols=258 Identities=17% Similarity=0.177 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
-.|....|+|-++- .+|+..+|+..|++++++. |..+..|.|||++|.+.+.||+|+..|++|+.++.
T Consensus 216 ~fAiawsnLg~~f~----~~Gei~~aiq~y~eAvkld--------P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 216 CFAIAWSNLGCVFN----AQGEIWLAIQHYEEAVKLD--------PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred ceeeeehhcchHHh----hcchHHHHHHHHHHhhcCC--------CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 45566677777762 5789999999999998665 67888999999999999999999999999988776
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccc------
Q 013867 140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQ------ 213 (435)
Q Consensus 140 ~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~------ 213 (435)
.+- .+-+|++-.|.++|.-+.|...+.+++.+- .++.+| -...+.|++.+ |+..+|..
T Consensus 284 n~A----~a~gNla~iYyeqG~ldlAI~~Ykral~~~-----P~F~~A--y~NlanALkd~-----G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 284 NHA----VAHGNLACIYYEQGLLDLAIDTYKRALELQ-----PNFPDA--YNNLANALKDK-----GSVTEAVDCYNKAL 347 (966)
T ss_pred cch----hhccceEEEEeccccHHHHHHHHHHHHhcC-----CCchHH--HhHHHHHHHhc-----cchHHHHHHHHHHH
Confidence 552 245788888999998888777777666552 123222 11222333221 22222110
Q ss_pred ccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH
Q 013867 214 EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 214 ~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA 293 (435)
...|.+.++++|+|.+|..||++++|..||++||++. |.++ ++.+|||.+|..||++++|
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~---------p~~a-----------aa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF---------PEFA-----------AAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC---------hhhh-----------hhhhhHHHHHHhcccHHHH
Confidence 0135677899999999999999999999999999992 1232 4568999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHH
Q 013867 294 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVA 373 (435)
Q Consensus 294 e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~ 373 (435)
..+|+.||.| .|..|.+|+|+|.+|..+|+.+.| ...|.||+.|. |..+..-+|++.+|
T Consensus 408 i~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A------~q~y~rAI~~n-------Pt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 408 IMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAA------IQCYTRAIQIN-------PTFAEAHSNLASIY 466 (966)
T ss_pred HHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHH------HHHHHHHHhcC-------cHHHHHHhhHHHHh
Confidence 9999999998 599999999999999999997765 89999999998 67788899999999
Q ss_pred HHhcCHHHHhhHh
Q 013867 374 LARGGYAEALSVQ 386 (435)
Q Consensus 374 ~a~G~yaeal~~~ 386 (435)
...|+-.+|+..+
T Consensus 467 kDsGni~~AI~sY 479 (966)
T KOG4626|consen 467 KDSGNIPEAIQSY 479 (966)
T ss_pred hccCCcHHHHHHH
Confidence 9999988886655
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=195.21 Aligned_cols=298 Identities=14% Similarity=0.136 Sum_probs=225.7
Q ss_pred cccccCCCCCccccccccCCCCcccCCCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHH
Q 013867 29 CLLSASTLPPPRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRG 108 (435)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A 108 (435)
||.+....+++...|..+ + .--|+.+-...+++-.+. .+|+..||-..|.++++++ |-.|
T Consensus 159 al~~~~~~~~a~~~~~~a------l--qlnP~l~ca~s~lgnLlk----a~Grl~ea~~cYlkAi~~q--------p~fA 218 (966)
T KOG4626|consen 159 ALVTQGDLELAVQCFFEA------L--QLNPDLYCARSDLGNLLK----AEGRLEEAKACYLKAIETQ--------PCFA 218 (966)
T ss_pred HHHhcCCCcccHHHHHHH------H--hcCcchhhhhcchhHHHH----hhcccchhHHHHHHHHhhC--------Ccee
Confidence 556666666666665555 2 123455556667777762 5789999999999999776 5688
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhc----CCCc-
Q 013867 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKH----KPEN- 183 (435)
Q Consensus 109 ~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~----~~~~- 183 (435)
....|||.++-.||+.-.||.+|++|.++...-+. +.=||+.+|.+++.++.|..-+.+.+.+.-+. +...
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~d----AYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~ 294 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLD----AYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLAC 294 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcCCCcchH----HHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEE
Confidence 89999999999999999999999999887765543 34478888889999988877666666553211 1000
Q ss_pred -hhch----hhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCC
Q 013867 184 -YKTY----GAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSD 258 (435)
Q Consensus 184 -~~ea----eal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~ 258 (435)
|-+. -++..+.++|. +. |....+.+|+|..+...|+.+||+.+|.+||...
T Consensus 295 iYyeqG~ldlAI~~Ykral~-----~~-----------P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-------- 350 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALE-----LQ-----------PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-------- 350 (966)
T ss_pred EEeccccHHHHHHHHHHHHh-----cC-----------CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------
Confidence 1111 23333333333 22 5566788999999999999999999999999881
Q ss_pred CCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhh
Q 013867 259 MNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL 338 (435)
Q Consensus 259 ~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~ 338 (435)
|. ...+++|||+.|..||++++|..+|++||++ -|+.+...||||.+|.+||++++|
T Consensus 351 ----------p~--hadam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~A--- 407 (966)
T KOG4626|consen 351 ----------PN--HADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDA--- 407 (966)
T ss_pred ----------Cc--cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHH---
Confidence 11 1258999999999999999999999999997 488999999999999999998776
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH----HHHHHHHHHHHhccc
Q 013867 339 LIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE----GERMKRWAEAAWRNR 407 (435)
Q Consensus 339 ~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e----ae~~~~~a~~~~~~~ 407 (435)
...|+.||.|- |..+..++|++..|.-+|+-.+|+..+.+.+-. ||.-.+.|+.+.-.+
T Consensus 408 ---i~~YkealrI~-------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsG 470 (966)
T KOG4626|consen 408 ---IMCYKEALRIK-------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSG 470 (966)
T ss_pred ---HHHHHHHHhcC-------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccC
Confidence 89999999997 778999999999999999999999877554333 566666766655433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.9e-17 Score=174.51 Aligned_cols=257 Identities=18% Similarity=0.171 Sum_probs=189.5
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
..+.|++|+.+|++++.+. ..+|..+..++++|.+|..+|+|++|+..|++++.+...... ++-.++..+.
T Consensus 306 ~~~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~----~~~~la~~~~ 376 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ----SYIKRASMNL 376 (615)
T ss_pred hhhhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHH
Confidence 4678999999999999765 456889999999999999999999999999999887654322 3345566677
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc------ccchhHHHHHHHHHHH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE------EGCTGSAALSYGEYLH 231 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~------~~~~~~~a~~la~~~~ 231 (435)
.+|++..|....+.++.+ .+ .+.+.+..+.. +....|+++.|...+ .|....+..++|.++.
T Consensus 377 ~~g~~~eA~~~~~~al~~----~p---~~~~~~~~lg~-----~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKL----NS---EDPDIYYHRAQ-----LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HCCCHHHHHHHHHHHHHh----CC---CCHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 788887777766665443 11 11122222221 122334444433211 3555567778899999
Q ss_pred HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 232 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 232 ~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
.+|+|++|+.+|++++.+. |.. ...++++|.+|..+|+|++|+..|++|+.+..+ ..+.
T Consensus 445 ~~g~~~eA~~~~~~al~~~---------P~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~-~~~~ 503 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF---------PEA-----------PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE-TKPM 503 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC---------CCC-----------hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc-cccc
Confidence 9999999999999999871 110 135689999999999999999999999998765 3445
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhh
Q 013867 312 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNR 389 (435)
Q Consensus 312 HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r 389 (435)
|+.+...++....+|..+|++++| +.+|++|+++. |+....+.+++.++..+|+|++|+..++..
T Consensus 504 ~~~~~~l~~~a~~~~~~~~~~~eA------~~~~~kAl~l~-------p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 504 YMNVLPLINKALALFQWKQDFIEA------ENLCEKALIID-------PECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHhcC-------CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 667777777777778878987766 89999999873 333446778999999999999999887543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-15 Score=163.73 Aligned_cols=288 Identities=13% Similarity=0.120 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~ 140 (435)
-|..+.+.|..+- ..|+|++|+..|++++.+.. + ...+.|+|.+|..+|+|++|++.+.+++++...
T Consensus 126 ~a~~~k~~G~~~~----~~~~~~~Ai~~y~~al~~~p-----~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~ 192 (615)
T TIGR00990 126 YAAKLKEKGNKAY----RNKDFNKAIKLYSKAIECKP-----D----PVYYSNRAACHNALGDWEKVVEDTTAALELDPD 192 (615)
T ss_pred HHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcCC-----c----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Confidence 4666778888873 36899999999999997763 2 246999999999999999999999999887544
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-----------HH---------------hcCCCc-----------
Q 013867 141 ILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQL-----------CE---------------KHKPEN----------- 183 (435)
Q Consensus 141 ~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l-----------~~---------------~~~~~~----------- 183 (435)
. +.++..++..|..+|.++.|.........+ +. ...+..
T Consensus 193 ~----~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (615)
T TIGR00990 193 Y----SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL 268 (615)
T ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 3 335566677777888776664322111000 00 000000
Q ss_pred -----------hhc--------hh-------------hHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHH
Q 013867 184 -----------YKT--------YG-------------AVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLH 231 (435)
Q Consensus 184 -----------~~e--------ae-------------al~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~ 231 (435)
+.+ .. ....+..|+...-+.+... ..++....+...+|.++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~------~~~~~~a~a~~~lg~~~~ 342 (615)
T TIGR00990 269 QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG------KLGEKEAIALNLRGTFKC 342 (615)
T ss_pred HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC------CCChhhHHHHHHHHHHHH
Confidence 000 00 0001111221111111100 012334455666788888
Q ss_pred HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 232 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 232 ~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
.+|+|++|+..|++++++. |. ...++.++|.+|..+|+|++|+..|++++++ .|+
T Consensus 343 ~~g~~~eA~~~~~kal~l~---------P~-----------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~ 397 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELD---------PR-----------VTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSE 397 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC---------CC-----------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC
Confidence 8999999999999988771 11 1235678888888888888888888888876 344
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhh
Q 013867 312 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKD 391 (435)
Q Consensus 312 HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~ 391 (435)
+ ..++.++|.+|..+|++++| ...|++++++. |+......+++.++..+|+|++|+..+..-..
T Consensus 398 ~---~~~~~~lg~~~~~~g~~~~A------~~~~~kal~l~-------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 461 (615)
T TIGR00990 398 D---PDIYYHRAQLHFIKGEFAQA------GKDYQKSIDLD-------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK 461 (615)
T ss_pred C---HHHHHHHHHHHHHcCCHHHH------HHHHHHHHHcC-------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4 45678888888888887766 78888888764 33334556788888888888888777643222
Q ss_pred H----HHHHHHHHHHHhcccchhHH
Q 013867 392 E----GERMKRWAEAAWRNRRVSLA 412 (435)
Q Consensus 392 e----ae~~~~~a~~~~~~~r~~l~ 412 (435)
. .+.+...+..++..+++..|
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHH
Confidence 1 34555566666666665554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-15 Score=164.53 Aligned_cols=271 Identities=11% Similarity=0.042 Sum_probs=174.9
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
-|+|++. +..++.+.- ..|++++|+..|++++.+. |.-...+..+|.+|..+|++++|++.|+++
T Consensus 72 ~p~~~~~---l~~l~~~~l----~~g~~~~A~~~l~~~l~~~--------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~A 136 (656)
T PRK15174 72 AKNGRDL---LRRWVISPL----ASSQPDAVLQVVNKLLAVN--------VCQPEDVLLVASVLLKSKQYATVADLAEQA 136 (656)
T ss_pred CCCchhH---HHHHhhhHh----hcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555554 445554442 3689999999999999665 334556889999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-------------HHhcCCCchhchhhHHHHHHHHH---
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQL-------------CEKHKPENYKTYGAVNSRANAVK--- 198 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l-------------~~~~~~~~~~eaeal~~~a~Ai~--- 198 (435)
+.+..... .++..++.++..+|..+.|...+...... +...+ .+++|...+.......
T Consensus 137 l~l~P~~~----~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g--~~~eA~~~~~~~l~~~~~~ 210 (656)
T PRK15174 137 WLAFSGNS----QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKS--RLPEDHDLARALLPFFALE 210 (656)
T ss_pred HHhCCCcH----HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCc
Confidence 87755432 23445556667777766665544432211 11111 2444433322211100
Q ss_pred --------HHHHHhcCCCccccccc------ccchhHHHHHHHHHHHHhhchHH----HHHHHHHHHHHHHHhcccCCCC
Q 013867 199 --------GLVELAHGNLESGLQEE------EGCTGSAALSYGEYLHATRNFLL----AKKFYQKVIEVLAEQKDFSDMN 260 (435)
Q Consensus 199 --------~~~~~lgg~h~~a~~~~------~~~~~~~a~~la~~~~~~G~y~e----Ae~ly~rAL~I~~~~~~~~~~~ 260 (435)
.....-.|++++|...+ +|....+..++|.+|..+|+|++ |+.+|++++++.
T Consensus 211 ~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~---------- 280 (656)
T PRK15174 211 RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN---------- 280 (656)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC----------
Confidence 00111123333322111 35556667778888888888885 788888888771
Q ss_pred CcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 013867 261 TLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLI 340 (435)
Q Consensus 261 ~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~ 340 (435)
|+ ...++++||.+|..+|+|++|+..|++++.+ +|+......+||.+|..+|++++|
T Consensus 281 --------P~--~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA----- 337 (656)
T PRK15174 281 --------SD--NVRIVTLYADALIRTGQNEKAIPLLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAA----- 337 (656)
T ss_pred --------CC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHH-----
Confidence 11 1246778899999999999999999998875 455556677889999999987766
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 341 QEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 341 Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
+..|+++++.. |+......+++.++...|++++|+..+.
T Consensus 338 -~~~l~~al~~~-------P~~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 338 -SDEFVQLAREK-------GVTSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred -HHHHHHHHHhC-------ccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77788887752 3323334446777888899998887663
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-14 Score=155.76 Aligned_cols=153 Identities=18% Similarity=0.120 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+..+++.++..+|++++|+..+++++... |+ ...+++++|.+|..+|++++|+.+|+++
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------------------~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH------------------PN--DAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------CC--CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 455667888888888888888888888651 11 1245688999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHH
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYA 380 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ya 380 (435)
+++ +|+-..+++++|.+|..+|+ ++| ..+|++++++. +++|. .+++++.++..+|+++
T Consensus 797 ~~~--------~p~~~~~~~~l~~~~~~~~~-~~A------~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 797 VKK--------APDNAVVLNNLAWLYLELKD-PRA------LEYAEKALKLA----PNIPA---ILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHh--------CCCCHHHHHHHHHHHHhcCc-HHH------HHHHHHHHhhC----CCCcH---HHHHHHHHHHHcCCHH
Confidence 975 45667789999999999998 655 89999999874 34443 5668899999999999
Q ss_pred HHhhHhhhhhhH----HHHHHHHHHHHhcccchhHHHHh
Q 013867 381 EALSVQQNRKDE----GERMKRWAEAAWRNRRVSLAEAL 415 (435)
Q Consensus 381 eal~~~~~r~~e----ae~~~~~a~~~~~~~r~~l~~~l 415 (435)
+|+..+.+-.+. .+.+...+..+|+.++...|..+
T Consensus 855 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 855 RALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 999987544433 46666789999999998777654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3e-14 Score=144.33 Aligned_cols=246 Identities=17% Similarity=0.156 Sum_probs=170.5
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
..|+|++|+..|+++++.. |....++..+|.+|..+|+|++|++.+++++.............+..++..|.
T Consensus 47 ~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD--------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred hcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4579999999999999653 56678899999999999999999999998875322111112335667778888
Q ss_pred hcCCCcchHHHHHHHHHH--------------HHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHH
Q 013867 158 QLGQDDTSSVVADKCLQL--------------CEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAA 223 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l--------------~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a 223 (435)
.+|.++.|..+.+..... +...+ ++++|... ..+.+. .+...+ ........
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g--~~~~A~~~--~~~~~~-----~~~~~~------~~~~~~~~ 183 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEK--DWQKAIDV--AERLEK-----LGGDSL------RVEIAHFY 183 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhc--hHHHHHHH--HHHHHH-----hcCCcc------hHHHHHHH
Confidence 888887777665554321 11111 12211111 111111 111100 01122334
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
.+++.++..+|++++|+.+|++++++. . . ...+...||.+|..+|++++|..+|++++.+
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~---p------~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAAD---P------Q-----------CVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHC---c------C-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 567888999999999999999999871 1 1 1134678999999999999999999999875
Q ss_pred HHHhhCCCChh-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHH
Q 013867 304 TEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEA 382 (435)
Q Consensus 304 ~e~~lG~~HP~-va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaea 382 (435)
+|+ +..+++.|+.+|..+|++++| ..++++++++. |+. . ...+++.++..+|++++|
T Consensus 244 --------~p~~~~~~~~~l~~~~~~~g~~~~A------~~~l~~~~~~~----p~~---~-~~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 244 --------DPEYLSEVLPKLMECYQALGDEAEG------LEFLRRALEEY----PGA---D-LLLALAQLLEEQEGPEAA 301 (389)
T ss_pred --------ChhhHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC----CCc---h-HHHHHHHHHHHhCCHHHH
Confidence 233 457789999999999998876 78899988863 222 2 236788999999999999
Q ss_pred hhHhhh
Q 013867 383 LSVQQN 388 (435)
Q Consensus 383 l~~~~~ 388 (435)
+.....
T Consensus 302 ~~~l~~ 307 (389)
T PRK11788 302 QALLRE 307 (389)
T ss_pred HHHHHH
Confidence 887643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-13 Score=151.20 Aligned_cols=295 Identities=14% Similarity=0.014 Sum_probs=185.3
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+.-++..+..+- ..|++++|+.++++.+... |.-...+.+|+..+..+|++++|++.|++++.+....
T Consensus 42 ~~~~~~~~~~~~----~~g~~~~A~~l~~~~l~~~--------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~ 109 (656)
T PRK15174 42 EQNIILFAIACL----RKDETDVGLTLLSDRVLTA--------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ 109 (656)
T ss_pred ccCHHHHHHHHH----hcCCcchhHHHhHHHHHhC--------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC
Confidence 344666666663 3689999999999999444 4446668889999999999999999999998776544
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH--------------HHhcCCCchhchhhHHHHHHHH---------H
Q 013867 142 LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQL--------------CEKHKPENYKTYGAVNSRANAV---------K 198 (435)
Q Consensus 142 L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l--------------~~~~~~~~~~eaeal~~~a~Ai---------~ 198 (435)
.. ++-.++..+..+|+...|...+++.+.+ +...+ .+++|...+...... .
T Consensus 110 ~~----a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g--~~~eA~~~~~~~~~~~P~~~~a~~~ 183 (656)
T PRK15174 110 PE----DVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMD--KELQAISLARTQAQEVPPRGDMIAT 183 (656)
T ss_pred hH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 22 3345556667777777776666554443 22222 233332222211100 0
Q ss_pred HHHHHhcCCCccccccc-------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchH
Q 013867 199 GLVELAHGNLESGLQEE-------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE 271 (435)
Q Consensus 199 ~~~~~lgg~h~~a~~~~-------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~ 271 (435)
.......|+++.|.... .+........++.++..+|+|++|+..|++++++. |+
T Consensus 184 ~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~------------------p~- 244 (656)
T PRK15174 184 CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG------------------LD- 244 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------------CC-
Confidence 00111234433332111 01111122334556777888888888888888660 11
Q ss_pred HHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 013867 272 VALAATFALGQLEAHMGNFGD----AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRR 347 (435)
Q Consensus 272 ~~l~~l~nLa~ly~~qG~y~e----Ae~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~r 347 (435)
....+++||.+|..+|+|++ |+.+|++++++ +|+.+.++.++|.+|..+|++++| +..|++
T Consensus 245 -~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA------~~~l~~ 309 (656)
T PRK15174 245 -GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKA------IPLLQQ 309 (656)
T ss_pred -CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHH------HHHHHH
Confidence 12456789999999999986 67777777765 366678888999999999997766 788999
Q ss_pred HHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH----HHHHHHHHHHHhcccchhHHHHh
Q 013867 348 ALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE----GERMKRWAEAAWRNRRVSLAEAL 415 (435)
Q Consensus 348 AL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e----ae~~~~~a~~~~~~~r~~l~~~l 415 (435)
++++. |+++ ....+++.++..+|+|++|+..+.+-... .......+..++..++...|...
T Consensus 310 al~l~----P~~~---~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 310 SLATH----PDLP---YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred HHHhC----CCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 88762 3333 35567889999999999998776332211 12222345566666666555443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-13 Score=148.16 Aligned_cols=261 Identities=21% Similarity=0.211 Sum_probs=138.7
Q ss_pred HHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH
Q 013867 64 QMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG 143 (435)
Q Consensus 64 ~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~ 143 (435)
....+|..+. ..|+|++|+.+|++++++. |.....+.+++.+|..+|++++|++.|++++......
T Consensus 467 ~~~~l~~~~~----~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-- 532 (899)
T TIGR02917 467 LHNLLGAIYL----GKGDLAKAREAFEKALSIE--------PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN-- 532 (899)
T ss_pred HHHHHHHHHH----hCCCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc--
Confidence 3445555553 3567888888888887543 3344567778888888888888888888776554332
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc------cc
Q 013867 144 VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE------EG 217 (435)
Q Consensus 144 i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~------~~ 217 (435)
+.++..++..+...|....|..+........ +. +.+.....+. .....|+.+.+.... .|
T Consensus 533 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~---~~~~~~~l~~-----~~~~~~~~~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 533 --LRAILALAGLYLRTGNEEEAVAWLEKAAELN----PQ---EIEPALALAQ-----YYLGKGQLKKALAILNEAADAAP 598 (899)
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cc---chhHHHHHHH-----HHHHCCCHHHHHHHHHHHHHcCC
Confidence 2234445555556666655554444332210 00 0000000000 000111111111000 12
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
....+...++.+|..+|+|++|+..|++++++. . . ....+..+|.+|..+|++++|...|
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~------~-----------~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ---P------D-----------SALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C------C-----------ChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 223445556666666677777777777666550 0 0 0123445666666666666666666
Q ss_pred HHHHHHHHH--------------------------hhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 298 TRTLTKTEE--------------------------LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 298 ~rAL~I~e~--------------------------~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
++++.+... .+...+|.....+..+|.+|..+|++++| ...|++++.+
T Consensus 659 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A------~~~~~~~~~~ 732 (899)
T TIGR02917 659 KRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA------IQAYRKALKR 732 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHH------HHHHHHHHhh
Confidence 666554211 11233555666677788888888887665 7777777765
Q ss_pred hcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 352 LKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 352 ~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
.. +. ..+.+++.++...|++.+|+...
T Consensus 733 ~~----~~----~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 733 AP----SS----QNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred CC----Cc----hHHHHHHHHHHHCCCHHHHHHHH
Confidence 31 11 23345566666666666665443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-13 Score=157.93 Aligned_cols=139 Identities=14% Similarity=0.070 Sum_probs=86.5
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCc-----------c--------------cc-cccch
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL-----------G--------------SC-NMALE 270 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l-----------~--------------~~-~~~~~ 270 (435)
|....+...+|.+|..+|++++|+..|++++++. - +.+.. + .. +....
T Consensus 492 P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~---P---~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~ 565 (1157)
T PRK11447 492 PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK---P---NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQ 565 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---C---CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHH
Confidence 5556777889999999999999999999998761 1 01000 0 00 00000
Q ss_pred H----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 013867 271 E----VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYR 346 (435)
Q Consensus 271 ~----~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~ 346 (435)
. +....+.+++..|..+|++++|+.+++ .||.....+.+||.+|..+|++++| +..|+
T Consensus 566 ~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~------------~~p~~~~~~~~La~~~~~~g~~~~A------~~~y~ 627 (1157)
T PRK11447 566 ELAQRLQSDQVLETANRLRDSGKEAEAEALLR------------QQPPSTRIDLTLADWAQQRGDYAAA------RAAYQ 627 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH------------hCCCCchHHHHHHHHHHHcCCHHHH------HHHHH
Confidence 0 000011244555666666666665544 3555556778899999999997776 78888
Q ss_pred HHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 347 RALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 347 rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
+++++. |++++ .+.+++.++..+|+|++|+...
T Consensus 628 ~al~~~----P~~~~---a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 628 RVLTRE----PGNAD---ARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHhC----CCCHH---HHHHHHHHHHHCCCHHHHHHHH
Confidence 888763 33332 4556777777777777776654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-13 Score=124.15 Aligned_cols=203 Identities=17% Similarity=0.174 Sum_probs=133.2
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
.++.+..+....++|..+.. .|+|++|+..+++++.. +|.....+..+|.+|..+|++++|++.|+++
T Consensus 24 ~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 91 (234)
T TIGR02521 24 TTDRNKAAKIRVQLALGYLE----QGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRA 91 (234)
T ss_pred cccCCcHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55667788888999998853 67999999999999865 3556788889999999999999999999887
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccc
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQE 214 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~ 214 (435)
+.+ ++..
T Consensus 92 l~~----------------------~~~~--------------------------------------------------- 98 (234)
T TIGR02521 92 LTL----------------------NPNN--------------------------------------------------- 98 (234)
T ss_pred Hhh----------------------CCCC---------------------------------------------------
Confidence 332 1110
Q ss_pred cccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHH
Q 013867 215 EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE 294 (435)
Q Consensus 215 ~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe 294 (435)
..+..+++.++..+|+|++|+.+|++++... ..+. ....+.++|.+|..+|++++|+
T Consensus 99 -----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~-----------~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 99 -----GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP-------LYPQ-----------PARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred -----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-------cccc-----------chHHHHHHHHHHHHcCCHHHHH
Confidence 0112234455666777777777777777541 0000 1123556777777777777777
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHH
Q 013867 295 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVAL 374 (435)
Q Consensus 295 ~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~ 374 (435)
.+|.+++.+ .+++ ...+..+|.+|..+|++++| ...+++++++. ++.+. .+..++.++.
T Consensus 156 ~~~~~~~~~-----~~~~---~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~----~~~~~---~~~~~~~~~~ 214 (234)
T TIGR02521 156 KYLTRALQI-----DPQR---PESLLELAELYYLRGQYKDA------RAYLERYQQTY----NQTAE---SLWLGIRIAR 214 (234)
T ss_pred HHHHHHHHh-----CcCC---hHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC----CCCHH---HHHHHHHHHH
Confidence 777777765 2333 34566777777777776655 66777777661 22222 2224555666
Q ss_pred HhcCHHHHhhHh
Q 013867 375 ARGGYAEALSVQ 386 (435)
Q Consensus 375 a~G~yaeal~~~ 386 (435)
..|++++|....
T Consensus 215 ~~~~~~~a~~~~ 226 (234)
T TIGR02521 215 ALGDVAAAQRYG 226 (234)
T ss_pred HHhhHHHHHHHH
Confidence 666666665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-13 Score=135.33 Aligned_cols=240 Identities=18% Similarity=0.134 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
+.......+|..+. ..|+|++|+.++++++..-. .........+.+||.+|..+|+|++|+..|+++++...
T Consensus 67 ~~~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~~~----~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 138 (389)
T PRK11788 67 ETVELHLALGNLFR----RRGEVDRAIRIHQNLLSRPD----LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD 138 (389)
T ss_pred ccHHHHHHHHHHHH----HcCcHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc
Confidence 33445566676663 36899999999999886311 11223557899999999999999999999999876432
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc----
Q 013867 140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE---- 215 (435)
Q Consensus 140 ~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~---- 215 (435)
. ...++..++.++..+|.+..|......+.... +.........+....+ .+..-.|++++|...+
T Consensus 139 ~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~la---~~~~~~~~~~~A~~~~~~al 207 (389)
T PRK11788 139 F----AEGALQQLLEIYQQEKDWQKAIDVAERLEKLG----GDSLRVEIAHFYCELA---QQALARGDLDAARALLKKAL 207 (389)
T ss_pred c----hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHH---HHHHhCCCHHHHHHHHHHHH
Confidence 2 23345667777888888877766655543321 1000000000000000 0011123322222111
Q ss_pred --ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH
Q 013867 216 --EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 216 --~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA 293 (435)
.|....+...++.+|..+|++++|..+|++++++- |+. ....++.|+.+|..+|++++|
T Consensus 208 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------------p~~-~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 208 AADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD------------------PEY-LSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred hHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC------------------hhh-HHHHHHHHHHHHHHcCCHHHH
Confidence 23344566778899999999999999999999761 110 123567899999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 294 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 294 e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
..++++++.+ +|+... ++.+|.+|..+|++++| ..+|++++++.
T Consensus 269 ~~~l~~~~~~--------~p~~~~-~~~la~~~~~~g~~~~A------~~~l~~~l~~~ 312 (389)
T PRK11788 269 LEFLRRALEE--------YPGADL-LLALAQLLEEQEGPEAA------QALLREQLRRH 312 (389)
T ss_pred HHHHHHHHHh--------CCCchH-HHHHHHHHHHhCCHHHH------HHHHHHHHHhC
Confidence 9999999886 344333 38999999999998776 89999998873
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-13 Score=157.79 Aligned_cols=284 Identities=13% Similarity=0.100 Sum_probs=182.8
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCC----------Ccch------------------------H
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQL----------AESW------------------------R 107 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~----------~Hp~------------------------~ 107 (435)
+..+.++|..+. .+|+|++|+.+|++++.+....... ..+. .
T Consensus 385 ~~a~~~Lg~~~~----~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 385 SYAVLGLGDVAM----ARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred HHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 345666777773 3689999999999999876431100 0000 0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHh---------
Q 013867 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEK--------- 178 (435)
Q Consensus 108 A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~--------- 178 (435)
...+..+|.+|..+|++++|++.|++++.+...... ..-.++.+|..+|....|...++.++.+.-.
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~----~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~a 536 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW----LTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYG 536 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 122445778888999999999999999887665432 2345666677777777776665554432100
Q ss_pred ---cCCCchhchhhHHHHH------HHHHH--------------HHHHhcCCCccccccc--ccchhHHHHHHHHHHHHh
Q 013867 179 ---HKPENYKTYGAVNSRA------NAVKG--------------LVELAHGNLESGLQEE--EGCTGSAALSYGEYLHAT 233 (435)
Q Consensus 179 ---~~~~~~~eaeal~~~a------~Ai~~--------------~~~~lgg~h~~a~~~~--~~~~~~~a~~la~~~~~~ 233 (435)
.....++++....... ..+.. ....-.|+.++|.... +|....+...+|.+|..+
T Consensus 537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~ 616 (1157)
T PRK11447 537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQR 616 (1157)
T ss_pred HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 0000122221111000 00000 0001123333322111 344456677889999999
Q ss_pred hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCh
Q 013867 234 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP 313 (435)
Q Consensus 234 G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP 313 (435)
|++++|+.+|++++++. |+ ...++.+||.+|..+|++++|+..|++++++ .|
T Consensus 617 g~~~~A~~~y~~al~~~------------------P~--~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p 668 (1157)
T PRK11447 617 GDYAAARAAYQRVLTRE------------------PG--NADARLGLIEVDIAQGDLAAARAQLAKLPAT--------AN 668 (1157)
T ss_pred CCHHHHHHHHHHHHHhC------------------CC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CC
Confidence 99999999999999881 11 1246789999999999999999999988764 45
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 314 KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 314 ~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
+....+.++|.+|..+|++++| ..+|++++...+...+ ....+..+..++.++..+|++++|+..+..
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA------~~~~~~al~~~~~~~~-~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAA------QRTFNRLIPQAKSQPP-SMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHH------HHHHHHHhhhCccCCc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5666788999999999998776 8999999887632111 112344555678899999999999887643
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-14 Score=114.89 Aligned_cols=74 Identities=22% Similarity=0.364 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 273 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 273 ~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++.+++|||.+|..+|+|++|+++|++|+.| .+.+|++||.++.+++|||.+|..+|++++| +.+|++|++|+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A------~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEA------LEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhh
Confidence 3457899999999999999999999999999 9999999999999999999999999998877 89999999998
Q ss_pred c
Q 013867 353 K 353 (435)
Q Consensus 353 k 353 (435)
+
T Consensus 77 ~ 77 (78)
T PF13424_consen 77 E 77 (78)
T ss_dssp H
T ss_pred c
Confidence 6
|
... |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.4e-13 Score=151.91 Aligned_cols=258 Identities=15% Similarity=0.075 Sum_probs=150.7
Q ss_pred CCChH--HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 56 LNSNP--VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 56 ~~~~~--vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~r 133 (435)
|..|+ .+....++|.++. +|++++|+..|.+++.... ++ .....+|.++...|+|++|+..|++
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~-----~~~~~eAi~a~~~Al~~~P-----d~----~~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYR-----DTLPGVALYAWLQAEQRQP-----DA----WQHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHH-----hCCcHHHHHHHHHHHHhCC-----ch----HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44455 6778889998883 3689999999999986652 21 2366778888999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccc
Q 013867 134 VENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQ 213 (435)
Q Consensus 134 al~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~ 213 (435)
+....... ..+..++..+...|....|...++..+.+ .+..+ .+. .. +... ....|+++.|..
T Consensus 535 a~~~~p~~-----~a~~~la~all~~Gd~~eA~~~l~qAL~l----~P~~~----~l~-~~--La~~-l~~~Gr~~eAl~ 597 (987)
T PRK09782 535 ISLHDMSN-----EDLLAAANTAQAAGNGAARDRWLQQAEQR----GLGDN----ALY-WW--LHAQ-RYIPGQPELALN 597 (987)
T ss_pred HhccCCCc-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCccH----HHH-HH--HHHH-HHhCCCHHHHHH
Confidence 75432111 11223344455666655555544433322 01000 000 00 0000 001122222211
Q ss_pred cc------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc
Q 013867 214 EE------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM 287 (435)
Q Consensus 214 ~~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q 287 (435)
.+ .|. ..+..++|.++..+|++++|+..|++++++ . |++ ....+|||.++..+
T Consensus 598 ~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----------~-------Pd~--~~a~~nLG~aL~~~ 656 (987)
T PRK09782 598 DLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----------E-------PNN--SNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------C-------CCC--HHHHHHHHHHHHHC
Confidence 11 132 456667777777778888888888877777 1 111 13567777777778
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhc
Q 013867 288 GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVD 367 (435)
Q Consensus 288 G~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~ 367 (435)
|++++|+.+|++|+++ +|+-+..+.|||.+|..+|++++| +..|++|+++. |+.+....
T Consensus 657 G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA------~~~l~~Al~l~-------P~~a~i~~ 715 (987)
T PRK09782 657 GDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAAT------QHYARLVIDDI-------DNQALITP 715 (987)
T ss_pred CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHH------HHHHHHHHhcC-------CCCchhhh
Confidence 8888888888777775 455556677788888888776655 67777777665 23222333
Q ss_pred cHHHHHHHhcCHHHHhhHh
Q 013867 368 RTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 368 nla~~~~a~G~yaeal~~~ 386 (435)
-.+.+...+.++..+...+
T Consensus 716 ~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 716 LTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3444444555555554433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-11 Score=113.20 Aligned_cols=196 Identities=15% Similarity=0.122 Sum_probs=144.7
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
.+.+..+..+.++|..|..+|+|++|+..+++++.. .|..
T Consensus 25 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----------------------~p~~------------------ 64 (234)
T TIGR02521 25 TDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH----------------------DPDD------------------ 64 (234)
T ss_pred ccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------------Cccc------------------
Confidence 556678999999999999999999999988876221 1110
Q ss_pred CchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 182 ENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
..+...++.+|..+|++++|+.+|++++++. . .
T Consensus 65 --------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~------~ 97 (234)
T TIGR02521 65 --------------------------------------YLAYLALALYYQQLGELEKAEDSFRRALTLN---P------N 97 (234)
T ss_pred --------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---C------C
Confidence 0122234667788999999999999999871 1 1
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQ 341 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~A 341 (435)
. ...+.++|.+|..+|+|++|+.+|++++.. +.+|.....+.++|.+|..+|++++|
T Consensus 98 ~-----------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A------ 154 (234)
T TIGR02521 98 N-----------GDVLNNYGTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKA------ 154 (234)
T ss_pred C-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHH------
Confidence 0 135679999999999999999999999974 45677778899999999999998776
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhh----HHHHHHHHHHHHhcccchhHHHH
Q 013867 342 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKD----EGERMKRWAEAAWRNRRVSLAEA 414 (435)
Q Consensus 342 e~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~----eae~~~~~a~~~~~~~r~~l~~~ 414 (435)
+..|++++.+. ++++ ....+++.++..+|+|++|......-.. ..+.+...+...++.+....+..
T Consensus 155 ~~~~~~~~~~~----~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 155 EKYLTRALQID----PQRP---ESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred HHHHHHHHHhC----cCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 89999999874 2233 3556789999999999999887633211 13444445555555555554443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.9e-12 Score=119.74 Aligned_cols=165 Identities=21% Similarity=0.210 Sum_probs=138.2
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
-.++..++..++.+|+.|- .+|++..|..-+|++|++. |+.-.++..||.+|..+|+.+-|.+.|++|
T Consensus 28 ~~~~~~aa~arlqLal~YL----~~gd~~~A~~nlekAL~~D--------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA 95 (250)
T COG3063 28 QTDRNEAAKARLQLALGYL----QQGDYAQAKKNLEKALEHD--------PSYYLAHLVRAHYYQKLGENDLADESYRKA 95 (250)
T ss_pred cccHHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence 3577889999999999994 3789999999999999765 788899999999999999999999999987
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccc
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQE 214 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~ 214 (435)
+.+ +
T Consensus 96 lsl----------------------~------------------------------------------------------ 99 (250)
T COG3063 96 LSL----------------------A------------------------------------------------------ 99 (250)
T ss_pred Hhc----------------------C------------------------------------------------------
Confidence 332 1
Q ss_pred cccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHH
Q 013867 215 EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE 294 (435)
Q Consensus 215 ~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe 294 (435)
|..+++.+|||.++|.||+|++|...|++|++- |..+. ...++-|+|.+-.++|+++.|+
T Consensus 100 --p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~----------P~Y~~--------~s~t~eN~G~Cal~~gq~~~A~ 159 (250)
T COG3063 100 --PNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD----------PAYGE--------PSDTLENLGLCALKAGQFDQAE 159 (250)
T ss_pred --CCccchhhhhhHHHHhCCChHHHHHHHHHHHhC----------CCCCC--------cchhhhhhHHHHhhcCCchhHH
Confidence 223468889999999999999999999999976 23331 1246789999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 295 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 295 ~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
.+|+|+|.+ .|+...++-.|+.+....|+|-+|
T Consensus 160 ~~l~raL~~--------dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 160 EYLKRALEL--------DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHHHHHHHh--------CcCCChHHHHHHHHHHhcccchHH
Confidence 999999986 566667777888899999997766
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-11 Score=141.54 Aligned_cols=237 Identities=11% Similarity=-0.076 Sum_probs=160.1
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcch--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESW--RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~--~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~ 156 (435)
.|+..++...++...... +.+|. -+..++++|.++.. |++++|+..|.++........ ..-.++-.+
T Consensus 451 ~~~~~~~~~~~~~~~~al-----~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-----~~L~lA~al 519 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLL-----GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-----QHRAVAYQA 519 (987)
T ss_pred HhhhhhhhhhHHHHHHhc-----ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-----HHHHHHHHH
Confidence 455666666666666544 34566 88899999999997 999999999999876554321 111112223
Q ss_pred HhcCCCcchHHHHHHHHH-------------HHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHH
Q 013867 157 LQLGQDDTSSVVADKCLQ-------------LCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAA 223 (435)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~-------------l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a 223 (435)
...|++..|......+.. ++...+ .+.+|.. ...+++. + +|......
T Consensus 520 ~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~G--d~~eA~~--~l~qAL~-----l-----------~P~~~~l~ 579 (987)
T PRK09782 520 YQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAG--NGAARDR--WLQQAEQ-----R-----------GLGDNALY 579 (987)
T ss_pred HHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCC--CHHHHHH--HHHHHHh-----c-----------CCccHHHH
Confidence 456766666555443221 111111 1221211 1112111 0 12222333
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
..++..+..+|+|++|+.+|++|+++. |+ .....++|.++..+|++++|+..|++++++
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l~------------------P~---~~a~~~LA~~l~~lG~~deA~~~l~~AL~l 638 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNIA------------------PS---ANAYVARATIYRQRHNVPAAVSDLRAALEL 638 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC------------------CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 334444455699999999999999881 11 135689999999999999999999999987
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHh
Q 013867 304 TEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEAL 383 (435)
Q Consensus 304 ~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal 383 (435)
+|+-+..++|||.++..+|++++| +.+|++|+++. |+......|++.++..+|++++|+
T Consensus 639 --------~Pd~~~a~~nLG~aL~~~G~~eeA------i~~l~~AL~l~-------P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 639 --------EPNNSNYQAALGYALWDSGDIAQS------REMLERAHKGL-------PDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred --------CCCCHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 455667999999999999998776 89999999975 343457789999999999999998
Q ss_pred hHhhh
Q 013867 384 SVQQN 388 (435)
Q Consensus 384 ~~~~~ 388 (435)
...++
T Consensus 698 ~~l~~ 702 (987)
T PRK09782 698 HYARL 702 (987)
T ss_pred HHHHH
Confidence 87643
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-13 Score=107.54 Aligned_cols=78 Identities=18% Similarity=0.123 Sum_probs=71.4
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
||.++..+.++|..+.+ +|+|++|+.+|++++.+ .+..|++||.++.++++||.+|..+|+|++|+++|+++++|
T Consensus 1 H~~~a~~~~~la~~~~~----~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE----LGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp -HHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 89999999999999953 68999999999999999 77889999999999999999999999999999999999888
Q ss_pred hhh
Q 013867 138 KNS 140 (435)
Q Consensus 138 ~e~ 140 (435)
.++
T Consensus 76 ~~k 78 (78)
T PF13424_consen 76 FEK 78 (78)
T ss_dssp HHH
T ss_pred hcC
Confidence 753
|
... |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-11 Score=129.88 Aligned_cols=274 Identities=15% Similarity=0.179 Sum_probs=178.1
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
..+-..|-.+|..+ +.. ++-+..+|+..|++ + ...|+.|..++.++|..|+++++|++|+..|+.+..+.
T Consensus 314 ~~l~~llr~~~~~~-~~~-s~y~~~~A~~~~~k-l-------p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~ 383 (638)
T KOG1126|consen 314 SELMELLRGLGEGY-RSL-SQYNCREALNLFEK-L-------PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE 383 (638)
T ss_pred HHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHh-h-------HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35666677777777 333 66778889988888 4 24478899999999999999999999999999875543
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccc
Q 013867 139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGC 218 (435)
Q Consensus 139 e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~ 218 (435)
.--+. -+ +++-+.+.-+... -++-..++ +++. .++.
T Consensus 384 p~rv~----~m-----------------eiyST~LWHLq~~--------v~Ls~Laq---~Li~------------~~~~ 419 (638)
T KOG1126|consen 384 PYRVK----GM-----------------EIYSTTLWHLQDE--------VALSYLAQ---DLID------------TDPN 419 (638)
T ss_pred ccccc----ch-----------------hHHHHHHHHHHhh--------HHHHHHHH---HHHh------------hCCC
Confidence 32211 00 1111111111100 11212222 1111 1123
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccC------CCCCccc-------------ccccchHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFS------DMNTLGS-------------CNMALEEVALAATFA 279 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~------~~~~l~~-------------~~~~~~~~~l~~l~n 279 (435)
-+.+-..+|.+|.-|++++.|+.+|+||+++ ..+|. +|....- --+.|.|. .++.+
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQl---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY--nAwYG 494 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQL---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY--NAWYG 494 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--HHHHh
Confidence 3345555677777788888888888888777 22211 1111000 01235543 57899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q 013867 280 LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLES 359 (435)
Q Consensus 280 La~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~h 359 (435)
||.+|.+|+||+.||-.|++|++| .|.--..+..+|..|.+.|+.|+| ..+|++|+.+-.+
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~A------L~~~~~A~~ld~k----- 555 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKA------LQLYEKAIHLDPK----- 555 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHH------HHHHHHHHhcCCC-----
Confidence 999999999999999999999998 688899999999999999998877 7889888876522
Q ss_pred CchhhhhccHHHHHHHhcCHHHHhhHhhh----hhhHHHHHHHHHHHHhcccchhHH
Q 013867 360 EGVETKVDRTDIVALARGGYAEALSVQQN----RKDEGERMKRWAEAAWRNRRVSLA 412 (435)
Q Consensus 360 p~~a~~l~nla~~~~a~G~yaeal~~~~~----r~~eae~~~~~a~~~~~~~r~~l~ 412 (435)
+....+ +.+.++...++|.||+...+. .-.|+-..+-....+-+-++..+|
T Consensus 556 -n~l~~~-~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 556 -NPLCKY-HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred -CchhHH-HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence 334333 577888899999999876532 223455555566666555554444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.7e-11 Score=127.59 Aligned_cols=209 Identities=12% Similarity=0.037 Sum_probs=138.7
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhhhhHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYES---------GNYVEAIEKLQKVENFKNSILGVRVAA 148 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~q---------Gky~eA~~l~~ral~i~e~~L~i~vaa 148 (435)
..+.+++|+.+|++++++. |.-+..+.+||.+|... |++++|+..+++++++.....
T Consensus 273 ~~~~~~~A~~~~~~Al~ld--------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~------ 338 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMS--------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP------ 338 (553)
T ss_pred CHHHHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH------
Confidence 5678999999999999655 45567778888876643 458999999999866543221
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHH
Q 013867 149 MEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGE 228 (435)
Q Consensus 149 le~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~ 228 (435)
.. ......++...+ .+++|... ..+++. +. |+...+...+|.
T Consensus 339 -----------------~a-~~~lg~~~~~~g--~~~~A~~~--~~~Al~-----l~-----------P~~~~a~~~lg~ 380 (553)
T PRK12370 339 -----------------QA-LGLLGLINTIHS--EYIVGSLL--FKQANL-----LS-----------PISADIKYYYGW 380 (553)
T ss_pred -----------------HH-HHHHHHHHHHcc--CHHHHHHH--HHHHHH-----hC-----------CCCHHHHHHHHH
Confidence 11 111222222333 24444443 334333 12 444567778899
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 229 ~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
+|..+|++++|+.+|++++++- +... .....++.++..+|+|++|+..+++++..
T Consensus 381 ~l~~~G~~~eAi~~~~~Al~l~--------P~~~------------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~----- 435 (553)
T PRK12370 381 NLFMAGQLEEALQTINECLKLD--------PTRA------------AAGITKLWITYYHTGIDDAIRLGDELRSQ----- 435 (553)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--------CCCh------------hhHHHHHHHHHhccCHHHHHHHHHHHHHh-----
Confidence 9999999999999999999881 1111 12234555677799999999999998754
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcC
Q 013867 309 GSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG 378 (435)
Q Consensus 309 G~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ 378 (435)
.+|+....+.++|.+|..+|++++| +..+++.+.. .|+-....++++.+|..+|+
T Consensus 436 --~~p~~~~~~~~la~~l~~~G~~~eA------~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 436 --HLQDNPILLSMQVMFLSLKGKHELA------RKLTKEISTQ-------EITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred --ccccCHHHHHHHHHHHHhCCCHHHH------HHHHHHhhhc-------cchhHHHHHHHHHHHhccHH
Confidence 3455566789999999999998877 6666654222 23333455667777777775
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.8e-11 Score=114.71 Aligned_cols=174 Identities=18% Similarity=0.154 Sum_probs=134.5
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
.++...+.....||.-|..+|++..|...+++|+.+. |.
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D----------------------Ps------------------- 67 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHD----------------------PS------------------- 67 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------cc-------------------
Confidence 4555678889999999999999999998888873321 11
Q ss_pred CchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 182 ENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
...+-..+|.+|..+|..+.|.+.|++||.+ +|.
T Consensus 68 -------------------------------------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---------~p~ 101 (250)
T COG3063 68 -------------------------------------YYLAHLVRAHYYQKLGENDLADESYRKALSL---------APN 101 (250)
T ss_pred -------------------------------------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---------CCC
Confidence 1122234577889999999999999999998 112
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQ 341 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~A 341 (435)
-| ..+||.|-.++.||+|++|...|++|++ -|.-|..+.++.|+|.+-.++|+.++|
T Consensus 102 ~G-----------dVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A------ 158 (250)
T COG3063 102 NG-----------DVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQA------ 158 (250)
T ss_pred cc-----------chhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhH------
Confidence 23 3589999999999999999999999987 488899999999999999999998877
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH
Q 013867 342 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE 392 (435)
Q Consensus 342 e~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e 392 (435)
+..|+|+|++-.. -|.+. --++-.....|+|.+|....+....-
T Consensus 159 ~~~l~raL~~dp~----~~~~~---l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 159 EEYLKRALELDPQ----FPPAL---LELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred HHHHHHHHHhCcC----CChHH---HHHHHHHHhcccchHHHHHHHHHHhc
Confidence 8999999999732 23322 22445566789999998776444433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-10 Score=121.21 Aligned_cols=226 Identities=8% Similarity=-0.078 Sum_probs=144.9
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
..+++++|+..+++++++. |.-+..+..+|.++..+|+|++|+..|++++.+...... ++..
T Consensus 316 ~~~~~~~A~~~~~~Al~ld--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~----a~~~------ 377 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD--------HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD----IKYY------ 377 (553)
T ss_pred cchHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHH------
Confidence 3467999999999999664 445667889999999999999999999999765433211 1112
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFL 237 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~ 237 (435)
...++...+. +++|.. ...+++. +.+. .......++.++..+|+|+
T Consensus 378 --------------lg~~l~~~G~--~~eAi~--~~~~Al~-----l~P~-----------~~~~~~~~~~~~~~~g~~e 423 (553)
T PRK12370 378 --------------YGWNLFMAGQ--LEEALQ--TINECLK-----LDPT-----------RAAAGITKLWITYYHTGID 423 (553)
T ss_pred --------------HHHHHHHCCC--HHHHHH--HHHHHHh-----cCCC-----------ChhhHHHHHHHHHhccCHH
Confidence 2222223332 443333 3333333 2222 1122233445566789999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 013867 238 LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV 317 (435)
Q Consensus 238 eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~ 317 (435)
+|+.+|++++... + |++ .....+||.+|..+|++++|+..+.+.+ +..|.-..
T Consensus 424 eA~~~~~~~l~~~--------~---------p~~--~~~~~~la~~l~~~G~~~eA~~~~~~~~--------~~~~~~~~ 476 (553)
T PRK12370 424 DAIRLGDELRSQH--------L---------QDN--PILLSMQVMFLSLKGKHELARKLTKEIS--------TQEITGLI 476 (553)
T ss_pred HHHHHHHHHHHhc--------c---------ccC--HHHHHHHHHHHHhCCCHHHHHHHHHHhh--------hccchhHH
Confidence 9999999988661 1 111 1346789999999999999999987753 34677778
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhHHHHHH
Q 013867 318 VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMK 397 (435)
Q Consensus 318 ~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~eae~~~ 397 (435)
..+.|+..|..+|+ +| ...+++.++..+. .+.++.. .+.++--+|+-+.+..+ .+-.+++..|.
T Consensus 477 ~~~~l~~~~~~~g~--~a------~~~l~~ll~~~~~-~~~~~~~------~~~~~~~~g~~~~~~~~-~~~~~~~~~~~ 540 (553)
T PRK12370 477 AVNLLYAEYCQNSE--RA------LPTIREFLESEQR-IDNNPGL------LPLVLVAHGEAIAEKMW-NKFKNEDNIWF 540 (553)
T ss_pred HHHHHHHHHhccHH--HH------HHHHHHHHHHhhH-hhcCchH------HHHHHHHHhhhHHHHHH-HHhhccchHhh
Confidence 88999999999985 33 5666665555432 2333332 56667777776666555 23334444444
Q ss_pred H
Q 013867 398 R 398 (435)
Q Consensus 398 ~ 398 (435)
+
T Consensus 541 ~ 541 (553)
T PRK12370 541 K 541 (553)
T ss_pred h
Confidence 3
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-09 Score=123.01 Aligned_cols=291 Identities=14% Similarity=0.050 Sum_probs=182.0
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAES-WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV-RVAAMEALAGLY 156 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp-~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i-~vaale~L~g~~ 156 (435)
.|++++|..+++++...........++ ..+.....++.++..+|+|++|+..+++++......... ...++..++..+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 578999999999998765433212222 245566678999999999999999999987642211110 111122222222
Q ss_pred HhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhch
Q 013867 157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNF 236 (435)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y 236 (435)
...|. ++++...+..+..+. ...|..+ ....+..+++.++..+|++
T Consensus 502 ~~~G~----------------------~~~A~~~~~~al~~~---~~~g~~~---------~~~~~~~~la~~~~~~G~~ 547 (903)
T PRK04841 502 HCKGE----------------------LARALAMMQQTEQMA---RQHDVYH---------YALWSLLQQSEILFAQGFL 547 (903)
T ss_pred HHcCC----------------------HHHHHHHHHHHHHHH---hhhcchH---------HHHHHHHHHHHHHHHCCCH
Confidence 22222 443434333333221 1222211 1223556778899999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHH
Q 013867 237 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG 316 (435)
Q Consensus 237 ~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va 316 (435)
++|+.++++++++.+...+ ..... .......+|.++..+|++++|+.++++++.+.+.. + .+..+
T Consensus 548 ~~A~~~~~~al~~~~~~~~---~~~~~---------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-~--~~~~~ 612 (903)
T PRK04841 548 QAAYETQEKAFQLIEEQHL---EQLPM---------HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY-Q--PQQQL 612 (903)
T ss_pred HHHHHHHHHHHHHHHHhcc---ccccH---------HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc-C--chHHH
Confidence 9999999999999654211 10110 11235678999999999999999999999998743 2 33466
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCC-------------------------------------CC
Q 013867 317 VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPL-------------------------------------ES 359 (435)
Q Consensus 317 ~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~-------------------------------------~h 359 (435)
.++.++|.++..+|++++| ...+++++.+....+. ..
T Consensus 613 ~~~~~la~~~~~~G~~~~A------~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~ 686 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNA------RRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFAN 686 (903)
T ss_pred HHHHHHHHHHHHcCCHHHH------HHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCcc
Confidence 7889999999999998877 6777777766532110 00
Q ss_pred Cc-hhhhhccHHHHHHHhcCHHHHhhHhhhhh----------hHHHHHHHHHHHHhcccchh-----HHHHhcccCCCCC
Q 013867 360 EG-VETKVDRTDIVALARGGYAEALSVQQNRK----------DEGERMKRWAEAAWRNRRVS-----LAEALNFSEPSNK 423 (435)
Q Consensus 360 p~-~a~~l~nla~~~~a~G~yaeal~~~~~r~----------~eae~~~~~a~~~~~~~r~~-----l~~~l~~~~~~~~ 423 (435)
+. ......+++.++..+|+|++|+.....-. ..++.+...+..+|+.++.. +.+||+...+.|.
T Consensus 687 ~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 687 NHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 00 00112367778889999999877653221 22445556888888877754 4456666666654
Q ss_pred C
Q 013867 424 P 424 (435)
Q Consensus 424 ~ 424 (435)
.
T Consensus 767 ~ 767 (903)
T PRK04841 767 I 767 (903)
T ss_pred h
Confidence 3
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.8e-10 Score=125.68 Aligned_cols=143 Identities=20% Similarity=0.157 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+...++.++..+|+|++|..+|++++++..+ .+ +.+..+.+++++|.++..+|++++|+.++++++
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~-~g-------------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 558 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQ-HD-------------VYHYALWSLLQQSEILFAQGFLQAAYETQEKAF 558 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-hc-------------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4456788889999999999999999999642 11 111234577899999999999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHH
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAE 381 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yae 381 (435)
.+.++..++.+|..+..+.++|.++..+|++++| +.++++++++.+..+ .+.....+.+++.++..+|++++
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A------~~~~~~al~~~~~~~--~~~~~~~~~~la~~~~~~G~~~~ 630 (903)
T PRK04841 559 QLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEA------EQCARKGLEVLSNYQ--PQQQLQCLAMLAKISLARGDLDN 630 (903)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHhcCHHHH------HHHHHHhHHhhhccC--chHHHHHHHHHHHHHHHcCCHHH
Confidence 9999988888888888889999999999998776 899999999987443 22344566789999999999999
Q ss_pred HhhHh
Q 013867 382 ALSVQ 386 (435)
Q Consensus 382 al~~~ 386 (435)
|....
T Consensus 631 A~~~l 635 (903)
T PRK04841 631 ARRYL 635 (903)
T ss_pred HHHHH
Confidence 97755
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-09 Score=118.93 Aligned_cols=268 Identities=11% Similarity=-0.005 Sum_probs=143.2
Q ss_pred HHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHH
Q 013867 67 NYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRV 146 (435)
Q Consensus 67 ~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~v 146 (435)
.+|..+. ..|++++|+.+++++++.. |.-+. +..+|.+|..+|++++|+..|++++++.......
T Consensus 88 ~la~~l~----~~g~~~eA~~~l~~~l~~~--------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~-- 152 (765)
T PRK10049 88 GLILTLA----DAGQYDEALVKAKQLVSGA--------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQY-- 152 (765)
T ss_pred HHHHHHH----HCCCHHHHHHHHHHHHHhC--------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--
Confidence 4555553 2567788888888877443 33344 7777888888888888888888887765543221
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHHH---------------HHHHHhcCCCchhchhhHHHHHHHHHHHHHHhc--CCCc
Q 013867 147 AAMEALAGLYLQLGQDDTSSVVADKC---------------LQLCEKHKPENYKTYGAVNSRANAVKGLVELAH--GNLE 209 (435)
Q Consensus 147 aale~L~g~~~~~g~~~~A~~~~~~~---------------~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lg--g~h~ 209 (435)
+-.++..+...+....|....+.. .............+.+......+|+...-..+. ...|
T Consensus 153 --~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p 230 (765)
T PRK10049 153 --PTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNP 230 (765)
T ss_pred --HHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCC
Confidence 112222333334443333222210 001100000000000000001223322111121 2222
Q ss_pred ccccccccchhHHHHH-HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC
Q 013867 210 SGLQEEEGCTGSAALS-YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG 288 (435)
Q Consensus 210 ~a~~~~~~~~~~~a~~-la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG 288 (435)
+.. +....+... ++ .+..+|+|++|+..|+++++. + ++. |+. ....+|.+|..+|
T Consensus 231 ~~~----~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~-----~---~~~-------P~~----a~~~la~~yl~~g 286 (765)
T PRK10049 231 DAT----ADYQRARIDRLG-ALLARDRYKDVISEYQRLKAE-----G---QII-------PPW----AQRWVASAYLKLH 286 (765)
T ss_pred ccc----hHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhcc-----C---CCC-------CHH----HHHHHHHHHHhcC
Confidence 211 112222222 33 345779999999999997765 1 101 211 1233688999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCChhH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc----C--CCCCCCc
Q 013867 289 NFGDAEEILTRTLTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK----A--PPLESEG 361 (435)
Q Consensus 289 ~y~eAe~l~~rAL~I~e~~lG~~HP~v-a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k----~--~~~~hp~ 361 (435)
++++|+.+|+++++. .+.++.. .....+|+.+|..+|++++| ..+++++++..- . ....+|+
T Consensus 287 ~~e~A~~~l~~~l~~-----~p~~~~~~~~~~~~L~~a~~~~g~~~eA------~~~l~~~~~~~P~~~~~~~~~~~~p~ 355 (765)
T PRK10049 287 QPEKAQSILTELFYH-----PETIADLSDEELADLFYSLLESENYPGA------LTVTAHTINNSPPFLRLYGSPTSIPN 355 (765)
T ss_pred CcHHHHHHHHHHhhc-----CCCCCCCChHHHHHHHHHHHhcccHHHH------HHHHHHHhhcCCceEeecCCCCCCCC
Confidence 999999999998853 2333222 35677888889999998877 677777776531 0 0122332
Q ss_pred --hhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 362 --VETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 362 --~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
-.....+++.++..+|++++|+...
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1223345667777777777776654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-09 Score=121.69 Aligned_cols=138 Identities=12% Similarity=-0.008 Sum_probs=101.2
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
...++..+..+|+|++|..++++++...-.. ....+.....|++........+|.++..+|++++|+.++++++.
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~-----~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPF-----LRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCce-----EeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556678899999999988888761000 00111101124433445667899999999999999999999997
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHH
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEA 382 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaea 382 (435)
+ +|+-...+.++|.+|..+|++++| +..+++++++. |+.+. ....++.++..+|+|++|
T Consensus 388 ~--------~P~n~~l~~~lA~l~~~~g~~~~A------~~~l~~al~l~----Pd~~~---l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 388 N--------APGNQGLRIDYASVLQARGWPRAA------ENELKKAEVLE----PRNIN---LEVEQAWTALDLQEWRQM 446 (765)
T ss_pred h--------CCCCHHHHHHHHHHHHhcCCHHHH------HHHHHHHHhhC----CCChH---HHHHHHHHHHHhCCHHHH
Confidence 6 455567999999999999998776 89999999876 33333 445678889999999999
Q ss_pred hhHh
Q 013867 383 LSVQ 386 (435)
Q Consensus 383 l~~~ 386 (435)
+...
T Consensus 447 ~~~~ 450 (765)
T PRK10049 447 DVLT 450 (765)
T ss_pred HHHH
Confidence 8876
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.7e-11 Score=115.52 Aligned_cols=256 Identities=20% Similarity=0.171 Sum_probs=82.1
Q ss_pred HHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHH
Q 013867 66 INYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR 145 (435)
Q Consensus 66 ~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~ 145 (435)
+.+|..+++ .|++++|+.++++...... .|+-...+..+|.+....|++++|+..|++.+.+......
T Consensus 12 l~~A~~~~~----~~~~~~Al~~L~~~~~~~~------~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~-- 79 (280)
T PF13429_consen 12 LRLARLLYQ----RGDYEKALEVLKKAAQKIA------PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQ-- 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccc----ccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccc--
Confidence 366888864 5899999999977653321 1223355667899999999999999999998765443221
Q ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhch----hhHHHHHHHHHHHHHHhcCCCcccccccccchhH
Q 013867 146 VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY----GAVNSRANAVKGLVELAHGNLESGLQEEEGCTGS 221 (435)
Q Consensus 146 vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ea----eal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~ 221 (435)
...++..+ ...+.+..|..++.....-.. .+.....+ .....+..+.. .++.+... + ..+....
T Consensus 80 --~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~~-~l~~~~~~-~-----~~~~~~~ 147 (280)
T PF13429_consen 80 --DYERLIQL-LQDGDPEEALKLAEKAYERDG--DPRYLLSALQLYYRLGDYDEAEE-LLEKLEEL-P-----AAPDSAR 147 (280)
T ss_dssp -------------------------------------------H-HHHTT-HHHHHH-HHHHHHH--T--------T-HH
T ss_pred --cccccccc-ccccccccccccccccccccc--ccchhhHHHHHHHHHhHHHHHHH-HHHHHHhc-c-----CCCCCHH
Confidence 23444444 344555444433322111100 00000000 00000001110 11111100 0 0012234
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
....+|.++..+|++++|+.+|++||+.. |++ ....++|+.++..+|+++++.+++++..
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~------------------P~~--~~~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALELD------------------PDD--PDARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-------------------TT---HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------CCC--HHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 55667888889999999999999999881 111 1346778888999999998777776655
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHH
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAE 381 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yae 381 (435)
... +..|. .+..+|.+|...|++++| ...|++++... |+-...+.+++.++...|++++
T Consensus 208 ~~~-----~~~~~---~~~~la~~~~~lg~~~~A------l~~~~~~~~~~-------p~d~~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 208 KAA-----PDDPD---LWDALAAAYLQLGRYEEA------LEYLEKALKLN-------PDDPLWLLAYADALEQAGRKDE 266 (280)
T ss_dssp HH------HTSCC---HCHHHHHHHHHHT-HHHH------HHHHHHHHHHS-------TT-HHHHHHHHHHHT-------
T ss_pred HHC-----cCHHH---HHHHHHHHhccccccccc------ccccccccccc-------cccccccccccccccccccccc
Confidence 554 55555 456779999999987766 78888877655 3323355567888888888888
Q ss_pred HhhHh
Q 013867 382 ALSVQ 386 (435)
Q Consensus 382 al~~~ 386 (435)
|..+.
T Consensus 267 A~~~~ 271 (280)
T PF13429_consen 267 ALRLR 271 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 87765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.3e-09 Score=116.27 Aligned_cols=327 Identities=17% Similarity=0.148 Sum_probs=202.1
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
..+||+=..-++--|... + ..++|..|+.+|+.+|.|.+.. +..|.++ +|..+++.|+-+.|+--|+|+
T Consensus 157 l~~sp~Nil~LlGkA~i~--y--nkkdY~~al~yyk~al~inp~~--~aD~rIg-----ig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIA--Y--NKKDYRGALKYYKKALRINPAC--KADVRIG-----IGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HhhCCcchHHHHHHHHHH--h--ccccHHHHHHHHHHHHhcCccc--CCCccch-----hhhHHHhccchhhHHHHHHHH
Confidence 566677666777666654 3 4679999999999999998753 3445554 456899999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccc
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQE 214 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~ 214 (435)
+.+.+...++.+ .|+. ......+. ......+.++......+.. .|...--.|-. ...-|+|+.+..+
T Consensus 226 lqLdp~~v~alv----~L~~-~~l~~~d~---~s~~~~~~ll~~ay~~n~~--nP~~l~~LAn~---fyfK~dy~~v~~l 292 (1018)
T KOG2002|consen 226 LQLDPTCVSALV----ALGE-VDLNFNDS---DSYKKGVQLLQRAYKENNE--NPVALNHLANH---FYFKKDYERVWHL 292 (1018)
T ss_pred HhcChhhHHHHH----HHHH-HHHHccch---HHHHHHHHHHHHHHhhcCC--CcHHHHHHHHH---HhhcccHHHHHHH
Confidence 988775544322 1111 11222221 2233333333322211100 11111111110 1122333332211
Q ss_pred c---------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHH
Q 013867 215 E---------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA 285 (435)
Q Consensus 215 ~---------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~ 285 (435)
. .+........+|..||.+|+|++|..+|.+++.. ..+ +.. -++..||+.|.
T Consensus 293 a~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~---~~d---~~~-------------l~~~GlgQm~i 353 (1018)
T KOG2002|consen 293 AEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA---DND---NFV-------------LPLVGLGQMYI 353 (1018)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---CCC---Ccc-------------ccccchhHHHH
Confidence 1 1112223455788999999999999999999988 221 112 23568999999
Q ss_pred HcCCHHHHHHHHHHHHHHHH------HhhCCCChhH------------------------HHHHHHHHHHHHHhhhhhhh
Q 013867 286 HMGNFGDAEEILTRTLTKTE------ELFGSHHPKV------------------------GVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 286 ~qG~y~eAe~l~~rAL~I~e------~~lG~~HP~v------------------------a~~L~nLA~ly~~qG~~e~A 335 (435)
++|++.+|+.+|++.+.... +++|.=|-.. ....-+||.+|..+.-+
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~--- 430 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW--- 430 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH---
Confidence 99999999999999887642 2233222221 22334444444433221
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhHH-------H-------HHHHHHH
Q 013867 336 SALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEG-------E-------RMKRWAE 401 (435)
Q Consensus 336 ~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~ea-------e-------~~~~~a~ 401 (435)
.+...|.+|++|+...+-.-| ...+||+|.++...|.+.+|+..+....+.. + .-++.|.
T Consensus 431 ----~sL~~~~~A~d~L~~~~~~ip--~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 431 ----ASLDAYGNALDILESKGKQIP--PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred ----HHHHHHHHHHHHHHHcCCCCC--HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 237889999999964332223 5689999999999999999988774433331 1 3557777
Q ss_pred HHhcccchhHHHHhcccCCCCCCceeeecccc
Q 013867 402 AAWRNRRVSLAEALNFSEPSNKPLVIDARTSR 433 (435)
Q Consensus 402 ~~~~~~r~~l~~~l~~~~~~~~~~~~~~r~~r 433 (435)
-.-...+.++|+....+=..-+|.-||+|++-
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl 536 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHPGYIDAYLRL 536 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCchhHHHHHHh
Confidence 77788888888888876665667789988763
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-09 Score=102.51 Aligned_cols=192 Identities=12% Similarity=0.094 Sum_probs=130.7
Q ss_pred CCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 56 ~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
|..+..+..+.+.|..+. ..|+|++|+..|++.+... +++|.....+..+|.+|..+|+|++|+..|++++
T Consensus 27 ~~~~~~~~~~~~~g~~~~----~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l 97 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEAL----DSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFI 97 (235)
T ss_pred CcccCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 555667778888888874 3689999999999998766 6678888899999999999999999999999984
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc
Q 013867 136 NFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE 215 (435)
Q Consensus 136 ~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~ 215 (435)
.. .|...-.. ..++....... ..
T Consensus 98 ~~----------------------~p~~~~~~--------------------~a~~~~g~~~~---~~------------ 120 (235)
T TIGR03302 98 RL----------------------HPNHPDAD--------------------YAYYLRGLSNY---NQ------------ 120 (235)
T ss_pred HH----------------------CcCCCchH--------------------HHHHHHHHHHH---Hh------------
Confidence 43 22211000 00100000000 00
Q ss_pred ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccccccc----chHHHHHHHHHHHHHHHHcCCHH
Q 013867 216 EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA----LEEVALAATFALGQLEAHMGNFG 291 (435)
Q Consensus 216 ~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~----~~~~~l~~l~nLa~ly~~qG~y~ 291 (435)
++.++..+|++++|...|++++... - ++ ........ ..........++|.+|..+|+|.
T Consensus 121 ----------~~~~~~~~~~~~~A~~~~~~~~~~~---p---~~-~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 183 (235)
T TIGR03302 121 ----------IDRVDRDQTAAREAFEAFQELIRRY---P---NS-EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYV 183 (235)
T ss_pred ----------cccccCCHHHHHHHHHHHHHHHHHC---C---CC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 0112345688999999999998772 1 11 11100000 00000011237899999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 292 DAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 292 eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
+|...|++++..+ |++|.....+.++|.+|...|++++|
T Consensus 184 ~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A 222 (235)
T TIGR03302 184 AAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLA 222 (235)
T ss_pred HHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999873 56799999999999999999998776
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-09 Score=106.86 Aligned_cols=207 Identities=12% Similarity=0.019 Sum_probs=131.1
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
.+..+.-..++|..+. +.|++++|+..|++++++. |.-+..++++|.+|..+|+|++|++.|++++.+
T Consensus 60 ~~~~a~~~~~~g~~~~----~~g~~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 127 (296)
T PRK11189 60 DEERAQLHYERGVLYD----SLGLRALARNDFSQALALR--------PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL 127 (296)
T ss_pred cHhhHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3444677888888884 4689999999999999754 556789999999999999999999999999765
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
..... .++.+++..+..+|++ ++| +....+++. ...
T Consensus 128 ~P~~~----~a~~~lg~~l~~~g~~----------------------~eA--~~~~~~al~-----~~P----------- 163 (296)
T PRK11189 128 DPTYN----YAYLNRGIALYYGGRY----------------------ELA--QDDLLAFYQ-----DDP----------- 163 (296)
T ss_pred CCCCH----HHHHHHHHHHHHCCCH----------------------HHH--HHHHHHHHH-----hCC-----------
Confidence 43321 1223333333333333 322 222223222 111
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
..+.. .-+..++...+++++|...|++++... +++. ..++.++...|++++++ .+
T Consensus 164 ~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~~-------~~~~----------------~~~~~~~~~lg~~~~~~-~~ 218 (296)
T PRK11189 164 NDPYR-ALWLYLAESKLDPKQAKENLKQRYEKL-------DKEQ----------------WGWNIVEFYLGKISEET-LM 218 (296)
T ss_pred CCHHH-HHHHHHHHccCCHHHHHHHHHHHHhhC-------Cccc----------------cHHHHHHHHccCCCHHH-HH
Confidence 11111 111223456789999999998876441 1111 12455666688887753 44
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+++++-.+... .-.|+...++.+||.+|..+|++++| +..|++|+++-
T Consensus 219 ~~~~~~~~~~~-~l~~~~~ea~~~Lg~~~~~~g~~~~A------~~~~~~Al~~~ 266 (296)
T PRK11189 219 ERLKAGATDNT-ELAERLCETYFYLAKYYLSLGDLDEA------AALFKLALANN 266 (296)
T ss_pred HHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhC
Confidence 55443221100 01245667899999999999998877 89999999776
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-10 Score=102.66 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.....+|.++..+|+|++|+.+|++|+++. . +++. ...+++|||.+|..+|++++|+.+|++|
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~---~---~~~~-----------~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLE---I---DPYD-----------RSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---c---cchh-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455667888999999999999999999992 1 1111 2246889999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc-CCCCCCCch
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGV 362 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k-~~~~~hp~~ 362 (435)
+.+.. ..+..|+.++.++.++|.++..+|++++| ...|.+++.+++ +++.+++.+
T Consensus 99 l~~~~-~~~~~~~~la~i~~~~~~~~~~~g~~~~A------~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 99 LERNP-FLPQALNNMAVICHYRGEQAIEQGDSEIA------EAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHhCc-CcHHHHHHHHHHHHHhhHHHHHcccHHHH------HHHHHHHHHHHHHHHHhCcccH
Confidence 98822 12222333444444444444477776655 888999999985 567777654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.5e-09 Score=98.82 Aligned_cols=178 Identities=15% Similarity=0.098 Sum_probs=132.1
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
+..+..+..+.++|..|...|+|++|+..|++++.+ .|+..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~----------------------~p~~~----------------- 67 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESR----------------------YPFSP----------------- 67 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCCch-----------------
Confidence 445677888999999999999999999988876321 22210
Q ss_pred CchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 182 ENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
. ...+...+|.+|..+|+|++|+..|++++++. ++++.
T Consensus 68 --------~----------------------------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~------p~~~~ 105 (235)
T TIGR03302 68 --------Y----------------------------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH------PNHPD 105 (235)
T ss_pred --------h----------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC------cCCCc
Confidence 0 00122334667788999999999999999882 11111
Q ss_pred cccccccchHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHH--------------
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHM--------GNFGDAEEILTRTLTKTEELFGSHHPKVGVVL-------------- 319 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~q--------G~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L-------------- 319 (435)
...++..+|.+|..+ |++++|...|++++.. -|+|+.....+
T Consensus 106 -----------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~~~~~~~~~~~~~ 169 (235)
T TIGR03302 106 -----------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-----YPNSEYAPDAKKRMDYLRNRLAGKE 169 (235)
T ss_pred -----------hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----CCCChhHHHHHHHHHHHHHHHHHHH
Confidence 112567888888876 8999999999999865 45555544333
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 320 TCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 320 ~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
.++|.+|..+|++++| ...|+++++.+ |++|.....+.+++.++...|+|++|...+
T Consensus 170 ~~~a~~~~~~g~~~~A------~~~~~~al~~~----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 170 LYVARFYLKRGAYVAA------INRFETVVENY----PDTPATEEALARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred HHHHHHHHHcCChHHH------HHHHHHHHHHC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3789999999998776 88999998876 445777778889999999999999998865
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.8e-10 Score=113.37 Aligned_cols=281 Identities=18% Similarity=0.099 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~ 140 (435)
+...+..++-.| |+ .++|.+|+++...-|....- + .+..--|.+.-|||+++.-.|.|+||+-+.+|-+++.+.
T Consensus 54 LSAIYsQLGNAy--fy--L~DY~kAl~yH~hDltlar~-l-gdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~are 127 (639)
T KOG1130|consen 54 LSAIYSQLGNAY--FY--LKDYEKALKYHTHDLTLARL-L-GDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARE 127 (639)
T ss_pred HHHHHHHhcchh--hh--HhhHHHHHhhhhhhHHHHHH-h-cchhccccccccccchhhhhcccchHHHHHHHHhHHHHH
Confidence 445667777777 55 57899999998877654432 2 233456778889999999999999999999998887754
Q ss_pred hHHHHHH---HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch-hch-----hhHHHHHHHHHHHHHHhcCCCccc
Q 013867 141 ILGVRVA---AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY-KTY-----GAVNSRANAVKGLVELAHGNLESG 211 (435)
Q Consensus 141 ~L~i~va---ale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~-~ea-----eal~~~a~Ai~~~~~~lgg~h~~a 211 (435)
||-+|. ++=||+.+|...|...- ..-++ ..+ .+ +|. .+...+...+ .+.+.+|.+.
T Consensus 128 -LgDrv~e~RAlYNlgnvYhakGk~~g-~~~pe-------e~g--~f~~ev~~al~~Av~fy~eNL-~l~~~lgDr~--- 192 (639)
T KOG1130|consen 128 -LGDRVLESRALYNLGNVYHAKGKCTG-LEAPE-------EKG--AFNAEVTSALENAVKFYMENL-ELSEKLGDRL--- 192 (639)
T ss_pred -HhHHHhhhHHHhhhhhhhhhcccccC-CCChh-------hcc--cccHHHHHHHHHHHHHHHHHH-HHHHHhhhHH---
Confidence 566544 56677777866664311 00000 001 11 111 1122222222 2344455432
Q ss_pred ccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHH
Q 013867 212 LQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFG 291 (435)
Q Consensus 212 ~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~ 291 (435)
..|.+.-|+|..|+..|+|+.|+.+.+.-|.|..+ |++. ++ .-.+..|||+.|.-.|+|+
T Consensus 193 ------aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e---fGDr---Aa--------eRRA~sNlgN~hiflg~fe 252 (639)
T KOG1130|consen 193 ------AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE---FGDR---AA--------ERRAHSNLGNCHIFLGNFE 252 (639)
T ss_pred ------hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH---hhhH---HH--------HHHhhcccchhhhhhcccH
Confidence 23445556778889999999999999999999543 2222 11 1246679999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHH
Q 013867 292 DAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDI 371 (435)
Q Consensus 292 eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~ 371 (435)
.|.++|+++|....+. |. --.-|.+...||..|.--..+++| +..++|=|+|...++..-- -+..-.-++.
T Consensus 253 ~A~ehYK~tl~LAiel-g~-r~vEAQscYSLgNtytll~e~~kA------I~Yh~rHLaIAqeL~DriG-e~RacwSLgn 323 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIEL-GN-RTVEAQSCYSLGNTYTLLKEVQKA------ITYHQRHLAIAQELEDRIG-ELRACWSLGN 323 (639)
T ss_pred hHHHHHHHHHHHHHHh-cc-hhHHHHHHHHhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhh-hHHHHHHHHH
Confidence 9999999999988764 33 334588889999999988887766 8999999999865432211 2344455777
Q ss_pred HHHHhcCHHHHhhHhhhhhh
Q 013867 372 VALARGGYAEALSVQQNRKD 391 (435)
Q Consensus 372 ~~~a~G~yaeal~~~~~r~~ 391 (435)
.+-+.|....|+..-+....
T Consensus 324 a~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 324 AFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 88888888888877644333
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-10 Score=81.04 Aligned_cols=41 Identities=29% Similarity=0.443 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 013867 274 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 314 (435)
Q Consensus 274 l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~ 314 (435)
+.+++|||.+|..+|+|++|++++++++.|++++||++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46789999999999999999999999999999999999996
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-08 Score=99.28 Aligned_cols=222 Identities=14% Similarity=-0.013 Sum_probs=137.6
Q ss_pred hcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 013867 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (435)
Q Consensus 80 G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~ 159 (435)
+..+.++.-+.+.|.... -+.+..+..++++|.+|...|++++|+..|++++++.... ..++.+++..+..+
T Consensus 40 ~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~ 111 (296)
T PRK11189 40 LQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQA 111 (296)
T ss_pred hHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHC
Confidence 456788888888885432 2234568899999999999999999999999997654332 11223333333333
Q ss_pred CCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHH
Q 013867 160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLA 239 (435)
Q Consensus 160 g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eA 239 (435)
|+ |++|.. .+.+++.. . |....+..++|.++..+|+|++|
T Consensus 112 g~----------------------~~~A~~--~~~~Al~l-----~-----------P~~~~a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 112 GN----------------------FDAAYE--AFDSVLEL-----D-----------PTYNYAYLNRGIALYYGGRYELA 151 (296)
T ss_pred CC----------------------HHHHHH--HHHHHHHh-----C-----------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 32 443333 23333331 1 44456778889999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 013867 240 KKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL 319 (435)
Q Consensus 240 e~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L 319 (435)
+..|++++++. |+++. .. -...++...+++++|...|.+++... .|+.
T Consensus 152 ~~~~~~al~~~------------------P~~~~-~~--~~~~l~~~~~~~~~A~~~l~~~~~~~-------~~~~---- 199 (296)
T PRK11189 152 QDDLLAFYQDD------------------PNDPY-RA--LWLYLAESKLDPKQAKENLKQRYEKL-------DKEQ---- 199 (296)
T ss_pred HHHHHHHHHhC------------------CCCHH-HH--HHHHHHHccCCHHHHHHHHHHHHhhC-------Cccc----
Confidence 99999999871 11111 11 11224556789999999998866321 2221
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 320 TCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 320 ~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
..++.++...|+..++ ..++++++-.+....-.|.......|++.++..+|+|++|+..+.+
T Consensus 200 ~~~~~~~~~lg~~~~~-------~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 200 WGWNIVEFYLGKISEE-------TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred cHHHHHHHHccCCCHH-------HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1134555556665432 2344444433211101133445677999999999999999998844
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-09 Score=114.88 Aligned_cols=240 Identities=12% Similarity=0.041 Sum_probs=161.8
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCC--------------------------CCcchHHHHH
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQ--------------------------LAESWRGISL 111 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG--------------------------~~Hp~~A~~l 111 (435)
|+++---+.++|..| |. .+.|++|+.+|+..-.+..-.+. ...|.--.+.
T Consensus 349 ~~nt~wvl~q~Gray--FE--l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesW 424 (638)
T KOG1126|consen 349 HYNTGWVLSQLGRAY--FE--LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESW 424 (638)
T ss_pred cCCchHHHHHHHHHH--HH--HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHH
Confidence 344444456677776 64 78999999999987666544322 1223333344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHH
Q 013867 112 LAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVN 191 (435)
Q Consensus 112 ~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~ 191 (435)
=.+|+.|.-|++++.|+.+|+||+.+.++--- .=| |.| |+... . ..|+ .+..
T Consensus 425 ca~GNcfSLQkdh~~Aik~f~RAiQldp~faY--ayT---LlG-----hE~~~-~---------------ee~d--~a~~ 476 (638)
T KOG1126|consen 425 CALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY--AYT---LLG-----HESIA-T---------------EEFD--KAMK 476 (638)
T ss_pred HHhcchhhhhhHHHHHHHHHHHhhccCCccch--hhh---hcC-----Chhhh-h---------------HHHH--hHHH
Confidence 46788899999999999999999776542210 001 112 22211 0 0133 2233
Q ss_pred HHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchH
Q 013867 192 SRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE 271 (435)
Q Consensus 192 ~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~ 271 (435)
.+.+|++. .|.+.++...+|.+|.+|++|+.|+-.|++|++| . |.
T Consensus 477 ~fr~Al~~----------------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I---------N---------P~- 521 (638)
T KOG1126|consen 477 SFRKALGV----------------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI---------N---------PS- 521 (638)
T ss_pred HHHhhhcC----------------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC---------C---------cc-
Confidence 45555542 1556789999999999999999999999999999 1 11
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 272 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 272 ~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
....++-+|..|...|+.|+|..+|++|+.+- |.---+..+.|.++...++|++| ...++..-++
T Consensus 522 -nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--------~kn~l~~~~~~~il~~~~~~~ea------l~~LEeLk~~ 586 (638)
T KOG1126|consen 522 -NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--------PKNPLCKYHRASILFSLGRYVEA------LQELEELKEL 586 (638)
T ss_pred -chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--------CCCchhHHHHHHHHHhhcchHHH------HHHHHHHHHh
Confidence 23467899999999999999999999999763 33334667889999999998776 3444333333
Q ss_pred hcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 352 LKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 352 ~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
. |+-+....-++-+|...|++.-|+.-+
T Consensus 587 ----v---P~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 587 ----V---PQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred ----C---cchHHHHHHHHHHHHHHccchHHHHhh
Confidence 2 444545666888999888888776544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-09 Score=108.93 Aligned_cols=256 Identities=14% Similarity=0.092 Sum_probs=165.3
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGIS-LLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR---VAAMEALAG 154 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~-l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~---vaale~L~g 154 (435)
+|+|...+.+|+.++. .|.++.+|... |..||+.|.-.++|++|+++..--+.+... +|-+ ..+.+||+.
T Consensus 30 ~gdcraGv~ff~aA~q-----vGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~-lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQ-----VGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARL-LGDKLGEAKSSGNLGN 103 (639)
T ss_pred ccchhhhHHHHHHHHH-----hcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHH-hcchhccccccccccc
Confidence 6899999999999995 45555566554 889999999999999999988766544322 2221 112233333
Q ss_pred HHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhh
Q 013867 155 LYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATR 234 (435)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G 234 (435)
...-+|.+++|..-..+-+.+. +.+|.+.- -+.+..|+|.+|+..|
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~a-------------------------reLgDrv~---------e~RAlYNlgnvYhakG 149 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFA-------------------------RELGDRVL---------ESRALYNLGNVYHAKG 149 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHH-------------------------HHHhHHHh---------hhHHHhhhhhhhhhcc
Confidence 3333444444433322222222 22333211 1245566666776655
Q ss_pred c--------------------hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHH
Q 013867 235 N--------------------FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE 294 (435)
Q Consensus 235 ~--------------------y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe 294 (435)
+ ++.|..+|+.-|++.++ .+ +.-..| .+..|||+.|+-.|+|+.|.
T Consensus 150 k~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~-lg--Dr~aqG-----------Ra~GnLGNTyYlLGdf~~ai 215 (639)
T KOG1130|consen 150 KCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK-LG--DRLAQG-----------RAYGNLGNTYYLLGDFDQAI 215 (639)
T ss_pred cccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHhhc-----------chhcccCceeeeeccHHHHH
Confidence 4 45667777777777543 21 111111 36789999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHH
Q 013867 295 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVAL 374 (435)
Q Consensus 295 ~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~ 374 (435)
...++=|.|..+ ||+. ..--.+..|||..|.-.|.++.| ...|++++.+...+|..... +.+-.-++..|.
T Consensus 216 ~~H~~RL~ia~e-fGDr-AaeRRA~sNlgN~hiflg~fe~A------~ehYK~tl~LAielg~r~vE-AQscYSLgNtyt 286 (639)
T KOG1130|consen 216 HFHKLRLEIAQE-FGDR-AAERRAHSNLGNCHIFLGNFELA------IEHYKLTLNLAIELGNRTVE-AQSCYSLGNTYT 286 (639)
T ss_pred HHHHHHHHHHHH-hhhH-HHHHHhhcccchhhhhhcccHhH------HHHHHHHHHHHHHhcchhHH-HHHHHHhhhHHH
Confidence 999999999876 5643 33456789999999999998877 78999999887655544433 333344566666
Q ss_pred HhcCHHHHhhHhhhhhhHHHHHH
Q 013867 375 ARGGYAEALSVQQNRKDEGERMK 397 (435)
Q Consensus 375 a~G~yaeal~~~~~r~~eae~~~ 397 (435)
---+|..|+..+.+-...|..+.
T Consensus 287 ll~e~~kAI~Yh~rHLaIAqeL~ 309 (639)
T KOG1130|consen 287 LLKEVQKAITYHQRHLAIAQELE 309 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888776655555554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-08 Score=99.40 Aligned_cols=197 Identities=13% Similarity=0.070 Sum_probs=127.3
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
++..+.+..+..-|+.|...|+|++|.+.|.++-++..+. +....+...+..+..++.+..
T Consensus 29 ~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~------------------~~~~~Aa~~~~~Aa~~~k~~~- 89 (282)
T PF14938_consen 29 PDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL------------------GDKFEAAKAYEEAANCYKKGD- 89 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT------------------T-HHHHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc------------------CCHHHHHHHHHHHHHHHHhhC-
Confidence 3666778888889999999999999999999997665442 222222233344555554432
Q ss_pred CchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHhcccCCCC
Q 013867 182 ENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHAT-RNFLLAKKFYQKVIEVLAEQKDFSDMN 260 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~-G~y~eAe~ly~rAL~I~~~~~~~~~~~ 260 (435)
+. +++....+|+... .-.|++.. -+.....+|.+|..+ |++++|.++|++|+++++... .
T Consensus 90 --~~--~Ai~~~~~A~~~y--~~~G~~~~--------aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~----~- 150 (282)
T PF14938_consen 90 --PD--EAIECYEKAIEIY--REAGRFSQ--------AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG----S- 150 (282)
T ss_dssp --HH--HHHHHHHHHHHHH--HHCT-HHH--------HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT------
T ss_pred --HH--HHHHHHHHHHHHH--HhcCcHHH--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC----C-
Confidence 33 3444555666542 34454322 234566789999999 999999999999999986422 1
Q ss_pred CcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 013867 261 TLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLI 340 (435)
Q Consensus 261 ~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~ 340 (435)
. +....++.++|.++...|+|++|..+|++........-.. .+.+-..+.+...++-.+|++..|
T Consensus 151 ~---------~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~-~~~~~~~~l~a~l~~L~~~D~v~A----- 215 (282)
T PF14938_consen 151 P---------HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL-KYSAKEYFLKAILCHLAMGDYVAA----- 215 (282)
T ss_dssp H---------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT-GHHHHHHHHHHHHHHHHTT-HHHH-----
T ss_pred h---------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc-chhHHHHHHHHHHHHHHcCCHHHH-----
Confidence 1 1123567899999999999999999999987654222222 235667778888899999986544
Q ss_pred HHHHHHHHHHHh
Q 013867 341 QEGLYRRALEFL 352 (435)
Q Consensus 341 Ae~Ly~rAL~I~ 352 (435)
...+++...+.
T Consensus 216 -~~~~~~~~~~~ 226 (282)
T PF14938_consen 216 -RKALERYCSQD 226 (282)
T ss_dssp -HHHHHHHGTTS
T ss_pred -HHHHHHHHhhC
Confidence 55555544443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-08 Score=111.71 Aligned_cols=187 Identities=13% Similarity=0.030 Sum_probs=130.6
Q ss_pred HHHHHHHHHHcCCHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhh
Q 013867 111 LLAMSTLLYESGNYVEA-IEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA 189 (435)
Q Consensus 111 l~nLa~ly~~qGky~eA-~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaea 189 (435)
+..+-.+..+-|+-+|| .++++|+.++.+++-.+...+ ++|..+......|..-....-.++.+....+. |+|++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~--~~ea~~ 107 (694)
T PRK15179 31 LDLLEAALAEPGESEEAGRELLQQARQVLERHAAVHKPA-AALPELLDYVRRYPHTELFQVLVARALEAAHR--SDEGLA 107 (694)
T ss_pred HhHHHHHhcCcccchhHHHHHHHHHHHHHHHhhhhcchH-hhHHHHHHHHHhccccHHHHHHHHHHHHHcCC--cHHHHH
Confidence 33455567778888877 567778877777664443221 12221111111121111223344555555553 666666
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccc
Q 013867 190 VNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMAL 269 (435)
Q Consensus 190 l~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~ 269 (435)
+..++..+ .|.+..+..+++.++..++++++|...++|+|++- |
T Consensus 108 ~l~~~~~~------------------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~------------------p 151 (694)
T PRK15179 108 VWRGIHQR------------------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG------------------S 151 (694)
T ss_pred HHHHHHhh------------------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC------------------C
Confidence 54444322 25666788889999999999999999999999881 1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 013867 270 EEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRAL 349 (435)
Q Consensus 270 ~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL 349 (435)
+ +...++.+|.++..+|+|+||+.+|+++++ .||+-+.++.++|.++...|+.++| ...|++|+
T Consensus 152 ~--~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A------~~~~~~a~ 215 (694)
T PRK15179 152 S--SAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRA------RDVLQAGL 215 (694)
T ss_pred C--CHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHH------HHHHHHHH
Confidence 1 235688999999999999999999999986 6888899999999999999998877 89999999
Q ss_pred HHh
Q 013867 350 EFL 352 (435)
Q Consensus 350 ~I~ 352 (435)
+..
T Consensus 216 ~~~ 218 (694)
T PRK15179 216 DAI 218 (694)
T ss_pred Hhh
Confidence 887
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-07 Score=104.60 Aligned_cols=274 Identities=17% Similarity=0.196 Sum_probs=162.8
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
-|++|.+-.-+.++-. ..|+|..+..+.+.++... ..-+-.+.+++.||..|..+|+|++|..+|.++
T Consensus 266 n~~nP~~l~~LAn~fy-------fK~dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFY-------FKKDYERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred cCCCcHHHHHHHHHHh-------hcccHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4556665555444221 3567888888888887655 233567888999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhch-----------hhHHHHHHHHHHHHHH
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY-----------GAVNSRANAVKGLVEL 203 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ea-----------eal~~~a~Ai~~~~~~ 203 (435)
+......+- -..-.|+-.|+..|....|. .|.+-+-++.+.+++.- +....+-+++.-+.+.
T Consensus 334 ~k~~~d~~~---l~~~GlgQm~i~~~dle~s~----~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 334 LKADNDNFV---LPLVGLGQMYIKRGDLEESK----FCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HccCCCCcc---ccccchhHHHHHhchHHHHH----HHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 876654410 00001111122223222221 12211222222222111 1111222333222222
Q ss_pred hcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHH
Q 013867 204 AHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQL 283 (435)
Q Consensus 204 lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~l 283 (435)
+--. |....+...++.+|.. ++--.+..+|.+|+.|++.... .+. | -.+||+|.+
T Consensus 407 ~~~~---------~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~-----~ip-----~-----E~LNNvasl 461 (1018)
T KOG2002|consen 407 LEQT---------PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGK-----QIP-----P-----EVLNNVASL 461 (1018)
T ss_pred Hhcc---------cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCC-----CCC-----H-----HHHHhHHHH
Confidence 2111 3344566667766654 5555559999999999864322 222 2 258999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhCCCC-hhH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCc
Q 013867 284 EAHMGNFGDAEEILTRTLTKTEELFGSHH-PKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEG 361 (435)
Q Consensus 284 y~~qG~y~eAe~l~~rAL~I~e~~lG~~H-P~v-a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~ 361 (435)
+...|.+.+|...|.+|+.+....--++- -+| .+...|||.++...++++.| +.+|+..+. .||.
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A------~e~Yk~Ilk-------ehp~ 528 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVA------EEMYKSILK-------EHPG 528 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHH------HHHHHHHHH-------HCch
Confidence 99999999999999999999554433332 122 56789999999999997766 889987554 3565
Q ss_pred hhhhhccHHHHHHHhcCHHHHhhH
Q 013867 362 VETKVDRTDIVALARGGYAEALSV 385 (435)
Q Consensus 362 ~a~~l~nla~~~~a~G~yaeal~~ 385 (435)
.....-.++.+...++...+|...
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHH
Confidence 333333455555666666665443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-07 Score=95.06 Aligned_cols=245 Identities=11% Similarity=0.045 Sum_probs=157.6
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
.+|++++|..+|+++.+...+ +.++..+. .+.++..+|+|++|+..+++..+..+++.. ++.-+..+|.
T Consensus 130 ~~g~~~~A~~~l~~A~~~~~~------~~~~~~l~-~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~----al~ll~~~~~ 198 (398)
T PRK10747 130 QRGDEARANQHLERAAELADN------DQLPVEIT-RVRIQLARNENHAARHGVDKLLEVAPRHPE----VLRLAEQAYI 198 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCc------chHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHH
Confidence 368999999999999854422 12333332 389999999999999999999887766643 3445567777
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcc--------cccccccchhHHHHHHHHH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES--------GLQEEEGCTGSAALSYGEY 229 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~--------a~~~~~~~~~~~a~~la~~ 229 (435)
..|+.+.+..+. ..+.+......++...+ +..+...+.....+..+. ..+...+..+.+...++..
T Consensus 199 ~~gdw~~a~~~l----~~l~k~~~~~~~~~~~l--~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~ 272 (398)
T PRK10747 199 RTGAWSSLLDIL----PSMAKAHVGDEEHRAML--EQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEH 272 (398)
T ss_pred HHHhHHHHHHHH----HHHHHcCCCCHHHHHHH--HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHH
Confidence 888776655433 33333332111112211 111211111111111000 0011234556788889999
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHh
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA--HMGNFGDAEEILTRTLTKTEEL 307 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~--~qG~y~eAe~l~~rAL~I~e~~ 307 (435)
+...|++++|+...++++.. . .+ + .+..+|. ..|++++|....++.+
T Consensus 273 l~~~g~~~~A~~~L~~~l~~---~----~~---------~---------~l~~l~~~l~~~~~~~al~~~e~~l------ 321 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKR---Q----YD---------E---------RLVLLIPRLKTNNPEQLEKVLRQQI------ 321 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc---C----CC---------H---------HHHHHHhhccCCChHHHHHHHHHHH------
Confidence 99999999999999999864 1 11 1 1122222 3488888887777766
Q ss_pred hCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 308 FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 308 lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
+.||+-+..+..+|.++..++++++| ...|++++++. |+.. ..-.++.++..+|+-++|...+
T Consensus 322 --k~~P~~~~l~l~lgrl~~~~~~~~~A------~~~le~al~~~-------P~~~-~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 322 --KQHGDTPLLWSTLGQLLMKHGEWQEA------SLAFRAALKQR-------PDAY-DYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred --hhCCCCHHHHHHHHHHHHHCCCHHHH------HHHHHHHHhcC-------CCHH-HHHHHHHHHHHcCCHHHHHHHH
Confidence 57888889999999999999998776 78899998874 4422 2224788888888888887666
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.98 E-value=9e-08 Score=96.00 Aligned_cols=210 Identities=11% Similarity=0.016 Sum_probs=126.6
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
|+-+.....+|..+. ..|++.+|...|.+........ ++........+.++..+|++++|++.+++++...
T Consensus 3 p~~~~a~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 73 (355)
T cd05804 3 PDFALGHAAAALLLL----LGGERPAAAAKAAAAAQALAAR-----ATERERAHVEALSAWIAGDLPKALALLEQLLDDY 73 (355)
T ss_pred CccHHHHHHHHHHHH----hcCCcchHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 445556666676652 2568889999999988777543 2344445567889999999999999999986543
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccc
Q 013867 139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGC 218 (435)
Q Consensus 139 e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~ 218 (435)
|.+. ..+.. ...+..... +.+. .....+++. ...+.+ +.
T Consensus 74 ----------------------P~~~-~a~~~-~~~~~~~~~---~~~~--~~~~~~~l~----~~~~~~--------~~ 112 (355)
T cd05804 74 ----------------------PRDL-LALKL-HLGAFGLGD---FSGM--RDHVARVLP----LWAPEN--------PD 112 (355)
T ss_pred ----------------------CCcH-HHHHH-hHHHHHhcc---cccC--chhHHHHHh----ccCcCC--------CC
Confidence 2211 00000 111111110 0000 001111111 122222 33
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
.......++.++..+|+|++|+..|++++++. .. . ......||.+|..+|++++|+.+|+
T Consensus 113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---p~-----~------------~~~~~~la~i~~~~g~~~eA~~~l~ 172 (355)
T cd05804 113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELN---PD-----D------------AWAVHAVAHVLEMQGRFKEGIAFME 172 (355)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC-----C------------cHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455566777888888888888888888771 10 1 1245678888888888888888888
Q ss_pred HHHHHHHHhhCCCChhH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 013867 299 RTLTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRAL 349 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~v-a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL 349 (435)
+++..... +|.. ...+.++|.+|..+|++++| ..+|++++
T Consensus 173 ~~l~~~~~-----~~~~~~~~~~~la~~~~~~G~~~~A------~~~~~~~~ 213 (355)
T cd05804 173 SWRDTWDC-----SSMLRGHNWWHLALFYLERGDYEAA------LAIYDTHI 213 (355)
T ss_pred hhhhccCC-----CcchhHHHHHHHHHHHHHCCCHHHH------HHHHHHHh
Confidence 88876542 3443 33456788888888887766 56666654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.96 E-value=4e-08 Score=97.32 Aligned_cols=167 Identities=16% Similarity=0.101 Sum_probs=111.8
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM-GNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q-G~y~eAe~l~~rAL~I~e 305 (435)
+.+| .++++++|+.+|++|++++.+ .| .+.. ....+.++|.+|..+ |++++|.++|++|+++++
T Consensus 82 a~~~-k~~~~~~Ai~~~~~A~~~y~~-~G---~~~~----------aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 82 ANCY-KKGDPDEAIECYEKAIEIYRE-AG---RFSQ----------AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYE 146 (282)
T ss_dssp HHHH-HHTTHHHHHHHHHHHHHHHHH-CT----HHH----------HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred HHHH-HhhCHHHHHHHHHHHHHHHHh-cC---cHHH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3444 445999999999999999853 22 1111 123677999999999 999999999999999999
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhH
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSV 385 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~ 385 (435)
..= ..-....++.++|.++...|+|++| ..+|++........+.....+...+-+..++++..|++-.|...
T Consensus 147 ~e~--~~~~a~~~~~~~A~l~~~l~~y~~A------~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~ 218 (282)
T PF14938_consen 147 QEG--SPHSAAECLLKAADLYARLGRYEEA------IEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKA 218 (282)
T ss_dssp HTT---HHHHHHHHHHHHHHHHHTT-HHHH------HHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HCC--ChhhHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 754 3344678889999999999998776 89999988765322222223444445677889999999887665
Q ss_pred hhh---------hhhHHHHHHHHHHHHhcccchhHHHHhc
Q 013867 386 QQN---------RKDEGERMKRWAEAAWRNRRVSLAEALN 416 (435)
Q Consensus 386 ~~~---------r~~eae~~~~~a~~~~~~~r~~l~~~l~ 416 (435)
... .-.|+.-+...-+++-.+.-=.+.+++.
T Consensus 219 ~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~ 258 (282)
T PF14938_consen 219 LERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVA 258 (282)
T ss_dssp HHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCH
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 422 2345665656666665544434444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-08 Score=91.84 Aligned_cols=96 Identities=8% Similarity=0.011 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
..++|..+..+|+|++|..+|++++.+ . |+ ....++++|.++..+|+|++|+..|++|+.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----------~-------P~--~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA-----------Q-------PW--SWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----------C-------CC--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 345688889999999999999999987 1 11 124678999999999999999999999998
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+ .|+-+..+.++|.+|..+|++++| +..|++|+++.
T Consensus 87 l--------~p~~~~a~~~lg~~l~~~g~~~eA------i~~~~~Al~~~ 122 (144)
T PRK15359 87 L--------DASHPEPVYQTGVCLKMMGEPGLA------REAFQTAIKMS 122 (144)
T ss_pred c--------CCCCcHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 6 577788899999999999998776 89999999876
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-07 Score=96.45 Aligned_cols=242 Identities=13% Similarity=0.108 Sum_probs=139.5
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
+|++++|..+|+++.+.. +++. + ......+.++.++|+|++|...+++.++..+++.. ++.-++-++.+
T Consensus 131 ~g~~~~A~~~l~~a~~~~-----p~~~-l-~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~----~l~ll~~~~~~ 199 (409)
T TIGR00540 131 RGDEARANQHLEEAAELA-----GNDN-I-LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKE----VLKLAEEAYIR 199 (409)
T ss_pred CCCHHHHHHHHHHHHHhC-----CcCc-h-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHH
Confidence 567888888888876322 2211 1 11223477777888888888888777665554432 23445556677
Q ss_pred cCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHH------------HHhcCCCcccccccccchhHHHHHH
Q 013867 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLV------------ELAHGNLESGLQEEEGCTGSAALSY 226 (435)
Q Consensus 159 ~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~------------~~lgg~h~~a~~~~~~~~~~~a~~l 226 (435)
.|+++.+........ +.......+...+ ...+..+++ ...-...|. ..+....+...+
T Consensus 200 ~~d~~~a~~~l~~l~----k~~~~~~~~~~~l--~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~----~~~~~~~l~~~~ 269 (409)
T TIGR00540 200 SGAWQALDDIIDNMA----KAGLFDDEEFADL--EQKAEIGLLDEAMADEGIDGLLNWWKNQPR----HRRHNIALKIAL 269 (409)
T ss_pred HhhHHHHHHHHHHHH----HcCCCCHHHHHHH--HHHHHHHHHHHHHHhcCHHHHHHHHHHCCH----HHhCCHHHHHHH
Confidence 777765554433322 2211111111111 111111101 001111111 112345667778
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhccc-----CCCCCcccc-------------cccchHHHHHHHHHHHHHHHHcC
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDF-----SDMNTLGSC-------------NMALEEVALAATFALGQLEAHMG 288 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~-----~~~~~l~~~-------------~~~~~~~~l~~l~nLa~ly~~qG 288 (435)
+..+...|++++|+...+++++..-..... ..-..+.++ -..|+.+....+..||.++..+|
T Consensus 270 a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~ 349 (409)
T TIGR00540 270 AEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHG 349 (409)
T ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcc
Confidence 899999999999999999999862111000 000001111 11244333244568999999999
Q ss_pred CHHHHHHHHHH--HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 013867 289 NFGDAEEILTR--TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP 356 (435)
Q Consensus 289 ~y~eAe~l~~r--AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~ 356 (435)
+|++|.++|++ ++++ +|+.-. +..||.++..+|+.++| ..+|+++|...-..+
T Consensus 350 ~~~~A~~~le~a~a~~~--------~p~~~~-~~~La~ll~~~g~~~~A------~~~~~~~l~~~~~~~ 404 (409)
T TIGR00540 350 EFIEAADAFKNVAACKE--------QLDAND-LAMAADAFDQAGDKAEA------AAMRQDSLGLMLAIQ 404 (409)
T ss_pred cHHHHHHHHHHhHHhhc--------CCCHHH-HHHHHHHHHHcCCHHHH------HHHHHHHHHHHhccc
Confidence 99999999995 5544 666655 44999999999998776 899999998875543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.2e-09 Score=93.63 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
.+++++|.++..+|+|++|+..|++|+.+ .++|++++.++.|+|.+|..+|++++| +..|++|+.+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l-----~~~~~~~~~~~~~lg~~~~~~g~~~eA------~~~~~~Al~~~~- 103 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRL-----EIDPYDRSYILYNIGLIHTSNGEHTKA------LEYYFQALERNP- 103 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----cccchhhHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhCc-
Confidence 46789999999999999999999999998 357788899999999999999998876 899999999843
Q ss_pred CCCCCCchhhhhccHHHHHH-------HhcCHHHHhhHhhhhhhHHHHHHHHHHHHhcccchhHHHHhc
Q 013867 355 PPLESEGVETKVDRTDIVAL-------ARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLAEALN 416 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~-------a~G~yaeal~~~~~r~~eae~~~~~a~~~~~~~r~~l~~~l~ 416 (435)
......+|++.++. .+|+|.+|+... .+|..+.+.+...+.+.-....+.|.
T Consensus 104 ------~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~----~~a~~~~~~a~~~~p~~~~~~~~~~~ 162 (168)
T CHL00033 104 ------FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF----DQAAEYWKQAIALAPGNYIEAQNWLK 162 (168)
T ss_pred ------CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH----HHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 33344556666666 666666665433 23444545555555544445554444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-08 Score=92.05 Aligned_cols=119 Identities=18% Similarity=0.244 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
......++|.+|..+|+|++|..+|++++.+. .. + ++ ....+.+||.+|..+|+|++|+..|+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~---~---------~~--~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLE---ED---P---------ND--RSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---hc---c---------ch--HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34456778889999999999999999999982 11 1 11 12457899999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh-hhhHHHHHHHHHHHHHhc-CCCCCCCch
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS-SALLIQEGLYRRALEFLK-APPLESEGV 362 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A-~~~~~Ae~Ly~rAL~I~k-~~~~~hp~~ 362 (435)
+++.+ +|+....+.++|.+|..+|+...+ ..+..|+..|++|+++++ +...++.++
T Consensus 97 ~al~~--------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 97 QALEL--------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHh--------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 99987 677788889999999888875433 235566888999999984 445555543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.3e-08 Score=109.42 Aligned_cols=131 Identities=11% Similarity=-0.016 Sum_probs=112.1
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
+....+..++|.+...+|+|++|+.++++++++. |+ ..++..+++.++..+++++||...
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~------------------Pd--~~~a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF------------------PD--SSEAFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC------------------CC--cHHHHHHHHHHHHHhccHHHHHHH
Confidence 3446788889999999999999999999999991 23 236788999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
++|+|.+ -|+-+..++++|.++..+|+|++| +.+|+|+++ .+++. ...+-+++.++..+
T Consensus 143 ~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A------~~~y~~~~~----~~p~~---~~~~~~~a~~l~~~ 201 (694)
T PRK15179 143 IELYFSG--------GSSSAREILLEAKSWDEIGQSEQA------DACFERLSR----QHPEF---ENGYVGWAQSLTRR 201 (694)
T ss_pred HHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHH------HHHHHHHHh----cCCCc---HHHHHHHHHHHHHc
Confidence 9999975 688899999999999999998887 899999998 23444 44666789999999
Q ss_pred cCHHHHhhHhhh
Q 013867 377 GGYAEALSVQQN 388 (435)
Q Consensus 377 G~yaeal~~~~~ 388 (435)
|+.++|...++.
T Consensus 202 G~~~~A~~~~~~ 213 (694)
T PRK15179 202 GALWRARDVLQA 213 (694)
T ss_pred CCHHHHHHHHHH
Confidence 999999887744
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-07 Score=96.94 Aligned_cols=217 Identities=14% Similarity=0.146 Sum_probs=155.3
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcc--hHHH------------------------HHHHHHHHHHHcCCHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAES--WRGI------------------------SLLAMSTLLYESGNYVEAIEKL 131 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp--~~A~------------------------~l~nLa~ly~~qGky~eA~~l~ 131 (435)
++-++|+|+.+||..+....-.++.-|. .+.= |+--+|+-|.-+++.++|+..|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence 4568999999999998876665553221 1111 1122455677789999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHH-HHHhcCCCcchHHHHHHHHHHHHhcCCCchh--c--------hhhHHHHHHHHHHH
Q 013867 132 QKVENFKNSILGVRVAAMEALAG-LYLQLGQDDTSSVVADKCLQLCEKHKPENYK--T--------YGAVNSRANAVKGL 200 (435)
Q Consensus 132 ~ral~i~e~~L~i~vaale~L~g-~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~--e--------aeal~~~a~Ai~~~ 200 (435)
+||+++.++.++. + .|+| -|++|-...+|...+.+++++.-...+.=|+ + .=+|+.+.+|+.
T Consensus 354 kRALkLNp~~~~a----W-TLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~-- 426 (559)
T KOG1155|consen 354 KRALKLNPKYLSA----W-TLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE-- 426 (559)
T ss_pred HHHHhcCcchhHH----H-HHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--
Confidence 9999988877653 2 2333 4667766667777776666553221110000 0 012333444332
Q ss_pred HHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHH
Q 013867 201 VELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFAL 280 (435)
Q Consensus 201 ~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nL 280 (435)
+ .|....+...+|.+|.+.++-++|+.+|.||+.. + + +- -.++..|
T Consensus 427 ---~-----------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-----~--d--te-----------~~~l~~L 472 (559)
T KOG1155|consen 427 ---L-----------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-----G--D--TE-----------GSALVRL 472 (559)
T ss_pred ---c-----------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----c--c--cc-----------hHHHHHH
Confidence 1 2444567788999999999999999999999977 1 1 11 1468899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhh
Q 013867 281 GQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSS 336 (435)
Q Consensus 281 a~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~ 336 (435)
|.+|...++++||-.+|++.++.. ..-|...|.+-.+.--||.-+...++|++|+
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 999999999999999999999988 7789999999999999999999999999985
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.8e-07 Score=103.25 Aligned_cols=126 Identities=16% Similarity=0.081 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
.+.+...|...|++++|..+|.+..+. | + .|+. .+++.|-..|.+.|++++|..+|.+...
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~-----G------v-----~PD~---~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKK-----G------V-----KPDE---VFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----C------C-----CCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 334444556666666666666654432 1 0 0221 2345555666666666666666666543
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHH
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEA 382 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaea 382 (435)
. ..+.-..+++.|...|.+.|++++| +.+|++..+. | -.|++. +.|.+-..|...|++++|
T Consensus 678 ~-------G~~pd~~tynsLI~ay~k~G~~eeA------~~lf~eM~~~----g-~~Pdvv-tyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 678 Q-------GIKLGTVSYSSLMGACSNAKNWKKA------LELYEDIKSI----K-LRPTVS-TMNALITALCEGNQLPKA 738 (1060)
T ss_pred c-------CCCCCHHHHHHHHHHHHhCCCHHHH------HHHHHHHHHc----C-CCCCHH-HHHHHHHHHHHCCCHHHH
Confidence 1 2222344667777777777776554 5556554322 1 123432 455555566666777777
Q ss_pred hhHh
Q 013867 383 LSVQ 386 (435)
Q Consensus 383 l~~~ 386 (435)
+.++
T Consensus 739 lelf 742 (1060)
T PLN03218 739 LEVL 742 (1060)
T ss_pred HHHH
Confidence 6655
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.5e-08 Score=101.31 Aligned_cols=207 Identities=16% Similarity=0.153 Sum_probs=146.0
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
..+|+.+.+....|.-|...|+|.+|..+|-++-.|..+ +|. -..+ ....+...+
T Consensus 306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgp-----------------aWl~------fghsfa~e~- 360 (611)
T KOG1173|consen 306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGP-----------------AWLA------FGHSFAGEG- 360 (611)
T ss_pred HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccH-----------------HHHH------HhHHhhhcc-
Confidence 568999999999999999999999999999988544322 111 1000 001111111
Q ss_pred CchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 182 ENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
..+ +++..+-.|-+ +..|.|- |. +-+|.=|..+++++-|+.+|.+|++|. +..
T Consensus 361 -Ehd--QAmaaY~tAar----l~~G~hl-------P~-----LYlgmey~~t~n~kLAe~Ff~~A~ai~------P~D-- 413 (611)
T KOG1173|consen 361 -EHD--QAMAAYFTAAR----LMPGCHL-------PS-----LYLGMEYMRTNNLKLAEKFFKQALAIA------PSD-- 413 (611)
T ss_pred -hHH--HHHHHHHHHHH----hccCCcc-------hH-----HHHHHHHHHhccHHHHHHHHHHHHhcC------CCc--
Confidence 112 33333444333 3556552 32 224555788999999999999999992 111
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQ 341 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~A 341 (435)
| -.++-+|.+....+.|.+|..+|+.+| +..+..+++-|....+++|||-+|+.+++|++|
T Consensus 414 ----------p--lv~~Elgvvay~~~~y~~A~~~f~~~l-~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA------ 474 (611)
T KOG1173|consen 414 ----------P--LVLHELGVVAYTYEEYPEALKYFQKAL-EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA------ 474 (611)
T ss_pred ----------c--hhhhhhhheeehHhhhHHHHHHHHHHH-HHhhhccccccchhHHHHhHHHHHHHHhhHHHH------
Confidence 1 136789999999999999999999999 667777888889999999999999999998766
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 342 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 342 e~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
...|++||..-- .. +....-+|.+|.-+|+.+.|...+
T Consensus 475 I~~~q~aL~l~~----k~---~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 475 IDYYQKALLLSP----KD---ASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHHHHcCC----Cc---hhHHHHHHHHHHHhcChHHHHHHH
Confidence 899999998762 22 223344678888889888886654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.7e-07 Score=92.59 Aligned_cols=209 Identities=13% Similarity=0.035 Sum_probs=131.8
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCc
Q 013867 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (435)
Q Consensus 104 Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~ 183 (435)
.|+-+..+..+|.+|...|++++|...+.++.......+.. .+.......... ..+ +
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~e~~~~~a~~~~-~~g--~ 58 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATE--------------------RERAHVEALSAW-IAG--D 58 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCH--------------------HHHHHHHHHHHH-HcC--C
Confidence 58899999999999999999999988888875544322111 011111111111 111 1
Q ss_pred hhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 013867 184 YKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLG 263 (435)
Q Consensus 184 ~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~ 263 (435)
++++.. ...+++. .+ |....+... +..+...|++..+.....+++... . ..+
T Consensus 59 ~~~A~~--~~~~~l~--------~~--------P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~---~--~~~---- 110 (355)
T cd05804 59 LPKALA--LLEQLLD--------DY--------PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW---A--PEN---- 110 (355)
T ss_pred HHHHHH--HHHHHHH--------HC--------CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc---C--cCC----
Confidence 332222 2222221 11 212222222 334556666666666666665431 1 111
Q ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 013867 264 SCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEG 343 (435)
Q Consensus 264 ~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~ 343 (435)
|+ ....+.++|.++..+|+|++|+..+++++++ .|+-...+..+|.+|..+|++++| +.
T Consensus 111 -----~~--~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~~~~la~i~~~~g~~~eA------~~ 169 (355)
T cd05804 111 -----PD--YWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWAVHAVAHVLEMQGRFKEG------IA 169 (355)
T ss_pred -----CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHH------HH
Confidence 11 2245678999999999999999999999997 344467789999999999998876 89
Q ss_pred HHHHHHHHhcCCCCCCCchh-hhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 344 LYRRALEFLKAPPLESEGVE-TKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 344 Ly~rAL~I~k~~~~~hp~~a-~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
+++++++.... +|+.. ....+++.++..+|++++|+..+..
T Consensus 170 ~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 170 FMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999987642 23321 2233688999999999999988754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.9e-08 Score=86.04 Aligned_cols=102 Identities=11% Similarity=-0.042 Sum_probs=86.2
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|....+...++..+..+|+|++|..+|++++.+. + . ......++|.+|..+|+|++|.+.
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p-~-----------~~~~~~~la~~~~~~~~~~~A~~~ 73 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--------P-Y-----------NSRYWLGLAACCQMLKEYEEAIDA 73 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------C-C-----------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888999999999999999999998871 1 1 114568999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|++++.+ +|+....+.++|.+|..+|++++| ...|+++++..
T Consensus 74 ~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~ 115 (135)
T TIGR02552 74 YALAAAL--------DPDDPRPYFHAAECLLALGEPESA------LKALDLAIEIC 115 (135)
T ss_pred HHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhc
Confidence 9999986 477788889999999999998776 88999999876
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-07 Score=100.03 Aligned_cols=214 Identities=14% Similarity=0.114 Sum_probs=149.8
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
...+|+-|.+-.-.|.=| .+-|+|.+|..+|-+|-.+. |.-+......|..|.-+|+.++|+..|-.|
T Consensus 305 V~~yP~~a~sW~aVg~YY----l~i~k~seARry~SKat~lD--------~~fgpaWl~fghsfa~e~EhdQAmaaY~tA 372 (611)
T KOG1173|consen 305 VDLYPSKALSWFAVGCYY----LMIGKYSEARRYFSKATTLD--------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTA 372 (611)
T ss_pred HHhCCCCCcchhhHHHHH----HHhcCcHHHHHHHHHHhhcC--------ccccHHHHHHhHHhhhcchHHHHHHHHHHH
Confidence 456777777766666554 25689999999999998666 456667778999999999999999999887
Q ss_pred HHhhh-hhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccc
Q 013867 135 ENFKN-SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQ 213 (435)
Q Consensus 135 l~i~e-~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~ 213 (435)
-.+-. .++.. + =++--|+.+|. +.-|+..+..+.+|.
T Consensus 373 arl~~G~hlP~----L-Ylgmey~~t~n----------------------~kLAe~Ff~~A~ai~--------------- 410 (611)
T KOG1173|consen 373 ARLMPGCHLPS----L-YLGMEYMRTNN----------------------LKLAEKFFKQALAIA--------------- 410 (611)
T ss_pred HHhccCCcchH----H-HHHHHHHHhcc----------------------HHHHHHHHHHHHhcC---------------
Confidence 54332 22110 0 00001212221 112233333333332
Q ss_pred ccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH
Q 013867 214 EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 214 ~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA 293 (435)
|..+-+.+-+|.+....+.|.+|+.+|+.+|+..+.... . ..- + -..++|||-+|+++++|++|
T Consensus 411 ---P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~--e--~~~---w------~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 411 ---PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN--E--KIF---W------EPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred ---CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc--c--ccc---h------hHHHHhHHHHHHHHhhHHHH
Confidence 334456677888889999999999999999966543222 1 110 1 12478999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 294 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 294 e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
...|++||.. -|.-+.++..+|.+|..+|+.+.| ...|.+||.|.
T Consensus 475 I~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~A------id~fhKaL~l~ 519 (611)
T KOG1173|consen 475 IDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKA------IDHFHKALALK 519 (611)
T ss_pred HHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHH------HHHHHHHHhcC
Confidence 9999999975 567788899999999999998877 77788888765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-06 Score=96.56 Aligned_cols=57 Identities=9% Similarity=0.116 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH
Q 013867 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKC 172 (435)
Q Consensus 109 ~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~ 172 (435)
.+++.|-..|.+.|++++|+.+|++.. ...+.+++.+...|...|..+.|..+.+.+
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~-------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M 215 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMP-------ERNLASWGTIIGGLVDAGNYREAFALFREM 215 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCC-------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 345555556666666666666665431 112334555555566666666555554443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=93.19 Aligned_cols=207 Identities=18% Similarity=0.187 Sum_probs=73.0
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
+.+++++|+..|++.+.+. +.....+.++..+ ...|+|++|+++++++..-.... ..+...+..+.
T Consensus 56 ~~~~~~~A~~ay~~l~~~~--------~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~-----~~l~~~l~~~~ 121 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASD--------KANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP-----RYLLSALQLYY 121 (280)
T ss_dssp ----------------------------------------------------------------------------H-HH
T ss_pred ccccccccccccccccccc--------ccccccccccccc-ccccccccccccccccccccccc-----chhhHHHHHHH
Confidence 4578999999999998654 2244457778887 79999999999998764322111 01122223333
Q ss_pred hcCCCcchHHHHHH----------------HHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhH
Q 013867 158 QLGQDDTSSVVADK----------------CLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGS 221 (435)
Q Consensus 158 ~~g~~~~A~~~~~~----------------~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~ 221 (435)
..+....+..+... .+.+....+. ++ +++....++++. .|....
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~--~~--~A~~~~~~al~~----------------~P~~~~ 181 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD--PD--KALRDYRKALEL----------------DPDDPD 181 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH--HH--HHHHHHHHHHHH-----------------TT-HH
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC--HH--HHHHHHHHHHHc----------------CCCCHH
Confidence 33433332222221 2222222221 11 111122222221 355567
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+..+++.++..+|++++|.++.++..... . ..+. ....+|.+|...|++++|..+|++++
T Consensus 182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~---~---~~~~--------------~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 182 ARNALAWLLIDMGDYDEAREALKRLLKAA---P---DDPD--------------LWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH----H---TSCC--------------HCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHC---c---CHHH--------------HHHHHHHHhccccccccccccccccc
Confidence 78888989999999999888888777662 1 1111 23578999999999999999999988
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.. +|+=..++.++|.++...|++++| ..++++++.-.
T Consensus 242 ~~--------~p~d~~~~~~~a~~l~~~g~~~~A------~~~~~~~~~~l 278 (280)
T PF13429_consen 242 KL--------NPDDPLWLLAYADALEQAGRKDEA------LRLRRQALRLL 278 (280)
T ss_dssp HH--------STT-HHHHHHHHHHHT-------------------------
T ss_pred cc--------cccccccccccccccccccccccc------ccccccccccc
Confidence 53 666667788999999999998877 88999988754
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-06 Score=86.87 Aligned_cols=226 Identities=17% Similarity=0.170 Sum_probs=146.3
Q ss_pred cHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC
Q 013867 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG 160 (435)
Q Consensus 81 ~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g 160 (435)
.-|+|+.+|-..+. ..|++-.+...||++|+++|+-|.||.+.+--++--.-...-++-++-.|+-=|+..|
T Consensus 50 Q~dKAvdlF~e~l~--------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 50 QPDKAVDLFLEMLQ--------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred CcchHHHHHHHHHh--------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Confidence 45799999988874 4578889999999999999999999998876432111112223335556666677777
Q ss_pred CCcchHHHHHHHHHHHHhcCCCc---hhchhhHHHHHHHHHH--HHHHhcCCCcccccccccchhHHHHHHHHHHHHhhc
Q 013867 161 QDDTSSVVADKCLQLCEKHKPEN---YKTYGAVNSRANAVKG--LVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRN 235 (435)
Q Consensus 161 ~~~~A~~~~~~~~~l~~~~~~~~---~~eaeal~~~a~Ai~~--~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~ 235 (435)
-++.|+.+...+.+-.+...+.. -..++.-..|.|||.. .+.+++|+--. -.+..-.+-||.-+....+
T Consensus 122 l~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~------~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 122 LLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR------VEIAQFYCELAQQALASSD 195 (389)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch------hHHHHHHHHHHHHHhhhhh
Confidence 77777766554443111110000 0011222356677754 23345554111 1111112223444445778
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH
Q 013867 236 FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 315 (435)
Q Consensus 236 y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v 315 (435)
++.|..+.+||++. .+. . +.+..-||.++..+|+|..|.+.++++++ .||--+
T Consensus 196 ~d~A~~~l~kAlqa---~~~-----c------------vRAsi~lG~v~~~~g~y~~AV~~~e~v~e-------Qn~~yl 248 (389)
T COG2956 196 VDRARELLKKALQA---DKK-----C------------VRASIILGRVELAKGDYQKAVEALERVLE-------QNPEYL 248 (389)
T ss_pred HHHHHHHHHHHHhh---Ccc-----c------------eehhhhhhHHHHhccchHHHHHHHHHHHH-------hChHHH
Confidence 89999999999987 111 1 23445789999999999888777776665 477778
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 316 GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 316 a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
..++.-|...|..+|+-++. +...+++.+...
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~------~~fL~~~~~~~~ 280 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEG------LNFLRRAMETNT 280 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHH------HHHHHHHHHccC
Confidence 99999999999999997765 778888888773
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-06 Score=98.99 Aligned_cols=248 Identities=12% Similarity=0.025 Sum_probs=140.7
Q ss_pred hcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 013867 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (435)
Q Consensus 80 G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~ 159 (435)
|++++|..+|++..+.. + .| -..+++.|-..|.+.|++++|.++|++.... -+...+.+++.+...|...
T Consensus 451 g~~e~A~~lf~~M~~~G---l---~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~---Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAG---L---KA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNA---GVEANVHTFGALIDGCARA 520 (1060)
T ss_pred cCHHHHHHHHHHHHHcC---C---CC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHC
Confidence 45555666665544321 1 12 2345666677777777777777777665321 1122345666666666666
Q ss_pred CCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc----------ccchhHHHHHHHHH
Q 013867 160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE----------EGCTGSAALSYGEY 229 (435)
Q Consensus 160 g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~----------~~~~~~~a~~la~~ 229 (435)
|..+.|..+.+.+... ....+ ...+..-|.... -.|+.+.|...+ .|+ ..+.+.+-..
T Consensus 521 G~~eeAl~lf~~M~~~---Gv~PD------~vTYnsLI~a~~--k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~a 588 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSK---NVKPD------RVVFNALISACG--QSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKA 588 (1060)
T ss_pred cCHHHHHHHHHHHHHc---CCCCC------HHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHH
Confidence 6665554443322110 00000 000111111000 001111111000 122 1234445567
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG 309 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG 309 (435)
|...|++++|+.+|++..+. + +- | ...+++.|-..|.+.|++++|..+|.+.... |
T Consensus 589 y~k~G~ldeA~elf~~M~e~-----g------i~-----p---~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G 644 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEY-----N------IK-----G---TPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G 644 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHc-----C------CC-----C---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C
Confidence 88899999999999876543 1 10 1 1245677888899999999999999887643 2
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 310 SHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 310 ~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
-.|+ ..+++.|...|...|++++| ..++++.++.. . .|+ ..+.+.+-.+|...|++++|+.++.
T Consensus 645 -v~PD-~~TynsLI~a~~k~G~~eeA------~~l~~eM~k~G----~-~pd-~~tynsLI~ay~k~G~~eeA~~lf~ 708 (1060)
T PLN03218 645 -VKPD-EVFFSALVDVAGHAGDLDKA------FEILQDARKQG----I-KLG-TVSYSSLMGACSNAKNWKKALELYE 708 (1060)
T ss_pred -CCCC-HHHHHHHHHHHHhCCCHHHH------HHHHHHHHHcC----C-CCC-HHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3455 56889999999999997766 67777765432 1 133 3366677788889999999988873
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.6e-07 Score=96.07 Aligned_cols=223 Identities=17% Similarity=0.152 Sum_probs=159.4
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
-|...+|.-.||.+. ...|.-+....-||.+....++=..||.-+++++++...-+ .+|.+|+.-|-.
T Consensus 298 nG~L~~A~LafEAAV--------kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl----eaLmaLAVSytN 365 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAV--------KQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL----EALMALAVSYTN 365 (579)
T ss_pred cCCchHHHHHHHHHH--------hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH----HHHHHHHHHHhh
Confidence 356889999999998 45688899999999999999999999999999988776554 356777777877
Q ss_pred cCCCcchHHHHHHHHHHHHhcC-------CCchh---chhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHH
Q 013867 159 LGQDDTSSVVADKCLQLCEKHK-------PENYK---TYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGE 228 (435)
Q Consensus 159 ~g~~~~A~~~~~~~~~l~~~~~-------~~~~~---eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~ 228 (435)
.|-...|..+.++.+..--++. +..++ .--.....+..-...++.. -+++. ..-+.+-..||.
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa-~~~~~------~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAA-RQLPT------KIDPDVQSGLGV 438 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHH-HhCCC------CCChhHHhhhHH
Confidence 7777777766666543321111 00000 0000001111111111111 11111 022356667899
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 229 ~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
+|+..|+|++|+.+|+.||.. . |..- ...|.||-.+..-.++.||..-|.|||++.
T Consensus 439 Ly~ls~efdraiDcf~~AL~v-----~-------------Pnd~--~lWNRLGAtLAN~~~s~EAIsAY~rALqLq---- 494 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQV-----K-------------PNDY--LLWNRLGATLANGNRSEEAISAYNRALQLQ---- 494 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhc-----C-------------CchH--HHHHHhhHHhcCCcccHHHHHHHHHHHhcC----
Confidence 999999999999999999977 1 1111 235889999999999999999999999984
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 309 GSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 309 G~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
|....+-.|||..|..+|-|.+| .+.|-.||.+.+.
T Consensus 495 ----P~yVR~RyNlgIS~mNlG~ykEA------~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 495 ----PGYVRVRYNLGISCMNLGAYKEA------VKHLLEALSMQRK 530 (579)
T ss_pred ----CCeeeeehhhhhhhhhhhhHHHH------HHHHHHHHHhhhc
Confidence 88889999999999999997766 8999999999954
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.5e-08 Score=85.86 Aligned_cols=106 Identities=16% Similarity=0.106 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 013867 239 AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVV 318 (435)
Q Consensus 239 Ae~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~ 318 (435)
-+.+|++|+++ . |+ ...++|.++..+|+|++|..+|++++.+ .|+-...
T Consensus 12 ~~~~~~~al~~-----------~-------p~-----~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a 60 (144)
T PRK15359 12 PEDILKQLLSV-----------D-------PE-----TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRA 60 (144)
T ss_pred HHHHHHHHHHc-----------C-------HH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHH
Confidence 46788999888 1 22 1457899999999999999999999976 5777889
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 319 LTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 319 L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
+.++|.++..+|++++| +..|++|+++. |++ ...+.|++.++...|++++|...+..
T Consensus 61 ~~~lg~~~~~~g~~~~A------~~~y~~Al~l~----p~~---~~a~~~lg~~l~~~g~~~eAi~~~~~ 117 (144)
T PRK15359 61 HIALAGTWMMLKEYTTA------INFYGHALMLD----ASH---PEPVYQTGVCLKMMGEPGLAREAFQT 117 (144)
T ss_pred HHHHHHHHHHHhhHHHH------HHHHHHHHhcC----CCC---cHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999998876 89999999864 334 44778999999999999999887733
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.7e-07 Score=98.10 Aligned_cols=46 Identities=11% Similarity=-0.008 Sum_probs=36.6
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
.|++++|..+|++... + ...+++.|...|.+.|++++|+++|++..
T Consensus 272 ~g~~~~A~~vf~~m~~----------~-~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 272 CGDIEDARCVFDGMPE----------K-TTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred CCCHHHHHHHHHhCCC----------C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4789999999986421 1 34578999999999999999999998754
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.2e-07 Score=77.72 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+..+.|..+..+|+|++|+..|++++... ++++. ...+...+|.+|...|+|++|..+|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY------PKSTY-----------APNAHYWLGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCccc-----------cHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 45667888899999999999999998761 11111 11356789999999999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.. .|+||.+..++.++|.+|..+|++++| +..|+++++..
T Consensus 67 ~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~A------~~~~~~~~~~~ 106 (119)
T TIGR02795 67 KK-----YPKSPKAPDALLKLGMSLQELGDKEKA------KATLQQVIKRY 106 (119)
T ss_pred HH-----CCCCCcccHHHHHHHHHHHHhCChHHH------HHHHHHHHHHC
Confidence 75 488998899999999999999998776 88999998875
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.3e-08 Score=97.45 Aligned_cols=219 Identities=14% Similarity=0.078 Sum_probs=133.6
Q ss_pred HHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHH
Q 013867 67 NYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRV 146 (435)
Q Consensus 67 ~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~v 146 (435)
.+|-+|- ..|-|.+|+..++++|+-.+ ||+| +.-|+.+|.+--+-..|...|.+.++...- .|
T Consensus 228 Q~gkCyl----rLgm~r~AekqlqssL~q~~------~~dT---fllLskvY~ridQP~~AL~~~~~gld~fP~----~V 290 (478)
T KOG1129|consen 228 QMGKCYL----RLGMPRRAEKQLQSSLTQFP------HPDT---FLLLSKVYQRIDQPERALLVIGEGLDSFPF----DV 290 (478)
T ss_pred HHHHHHH----HhcChhhhHHHHHHHhhcCC------chhH---HHHHHHHHHHhccHHHHHHHHhhhhhcCCc----hh
Confidence 3444543 46889999999999996553 3332 344555555555555555555555443221 11
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHH-----------HhcCCCchhch--hhHHHHHHHHHHHHHHhcCCCccccc
Q 013867 147 AAMEALAGLYLQLGQDDTSSVVADKCLQLC-----------EKHKPENYKTY--GAVNSRANAVKGLVELAHGNLESGLQ 213 (435)
Q Consensus 147 aale~L~g~~~~~g~~~~A~~~~~~~~~l~-----------~~~~~~~~~ea--eal~~~a~Ai~~~~~~lgg~h~~a~~ 213 (435)
.-+=..+..+..+++.+.|..++...+.+- -.+. |++- -++-.+.. +-.+|-.
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf---Y~~~PE~AlryYRR-----iLqmG~~------ 356 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF---YDNNPEMALRYYRR-----ILQMGAQ------ 356 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc---cCCChHHHHHHHHH-----HHHhcCC------
Confidence 111111222333444444443333322220 0011 1111 11111111 1123322
Q ss_pred ccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH
Q 013867 214 EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 214 ~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA 293 (435)
.+...+|+|.++.--++||-+.+.|+||+...+. . .. ......|||.+....|++.-|
T Consensus 357 -----speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-~------~~----------aaDvWYNlg~vaV~iGD~nlA 414 (478)
T KOG1129|consen 357 -----SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-P------GQ----------AADVWYNLGFVAVTIGDFNLA 414 (478)
T ss_pred -----ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-c------ch----------hhhhhhccceeEEeccchHHH
Confidence 2356778888777789999999999999988431 1 11 124578999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 294 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 294 e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
...|+-||. +.|+-+.+|||||.+-.+.|+.++| ..||.-|-..+
T Consensus 415 ~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~~A------rsll~~A~s~~ 459 (478)
T KOG1129|consen 415 KRCFRLALT--------SDAQHGEALNNLAVLAARSGDILGA------RSLLNAAKSVM 459 (478)
T ss_pred HHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchHHH------HHHHHHhhhhC
Confidence 999998885 6788899999999999999998776 77888776665
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.7e-07 Score=79.97 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+....|.++..+|+.++|+++|++|++. | ..+ + ....++.+||..|..+|++++|+.++++++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----g-----L~~-----~--~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA-----G-----LSG-----A--DRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-----CCc-----h--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566788999999999999999999975 2 111 1 133578899999999999999999999987
Q ss_pred HHHHHhhCCCChh---HHHHHHHHHHHHHHhhhhhhh
Q 013867 302 TKTEELFGSHHPK---VGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 302 ~I~e~~lG~~HP~---va~~L~nLA~ly~~qG~~e~A 335 (435)
. +||+ ....-..+|.++..+|++++|
T Consensus 66 ~--------~~p~~~~~~~l~~f~Al~L~~~gr~~eA 94 (120)
T PF12688_consen 66 E--------EFPDDELNAALRVFLALALYNLGRPKEA 94 (120)
T ss_pred H--------HCCCccccHHHHHHHHHHHHHCCCHHHH
Confidence 4 3344 566667789999999998887
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-06 Score=82.76 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=85.2
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHH-HHHcCC--HHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQL-EAHMGN--FGDA 293 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~l-y~~qG~--y~eA 293 (435)
|.....-..+|.+|..+|+|++|+..|++|+.+. |+ ....+.++|.+ |...|+ +++|
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~------------------P~--~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR------------------GE--NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------CC--CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4456677888999999999999999999999981 11 12457899986 578888 5999
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 294 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 294 e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
..+|++++.+ +|+-..++.+||..+..+|+|++| +..|++++++.
T Consensus 130 ~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~A------i~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALAL--------DANEVTALMLLASDAFMQADYAQA------IELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHH------HHHHHHHHhhC
Confidence 9999999985 566667999999999999998876 89999999887
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.5e-07 Score=68.15 Aligned_cols=96 Identities=20% Similarity=0.270 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
..++|..+..+|+|++|++++++++.+. . . ...+..++|.+|..+|++++|..+|++++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~------~-----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD---P------D-----------NADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC---C------c-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457788889999999999999999871 1 0 013567899999999999999999999998
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+ .+.++ .++.++|.+|..+|++++| ...+++++.+.
T Consensus 63 ~-----~~~~~---~~~~~~~~~~~~~~~~~~a------~~~~~~~~~~~ 98 (100)
T cd00189 63 L-----DPDNA---KAYYNLGLAYYKLGKYEEA------LEAYEKALELD 98 (100)
T ss_pred C-----CCcch---hHHHHHHHHHHHHHhHHHH------HHHHHHHHccC
Confidence 5 34444 7889999999999998776 77888887653
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.9e-07 Score=103.96 Aligned_cols=240 Identities=14% Similarity=0.094 Sum_probs=169.7
Q ss_pred CccccccccCCC-CcccCCCCCh--HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHH
Q 013867 38 PPRRLVHDANGN-GNRINGLNSN--PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAM 114 (435)
Q Consensus 38 ~~~~~~~~~~~~-~~~~~g~~~~--~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nL 114 (435)
.|..-|-.-++. -+++.-+-.| ..|..+-.-+-. .-.+|.+.+|-+ .-+++....+..|.-||+++..|-.|
T Consensus 905 ~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~----~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~L 979 (1236)
T KOG1839|consen 905 EPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQE----ALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSL 979 (1236)
T ss_pred CCCCCCCcccccccccccccCCCccchhhhhhhhhhh----hhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHH
Confidence 344445555554 3444444455 333333322211 124678888888 77888888888899999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHH
Q 013867 115 STLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRA 194 (435)
Q Consensus 115 a~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a 194 (435)
+.++...|++++|+..-.++.-|.++.+|.. ++. ...
T Consensus 980 a~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d--------------s~~-t~~---------------------------- 1016 (1236)
T KOG1839|consen 980 AKLSNRLGDNQEAIAQQRKACIISERVLGKD--------------SPN-TKL---------------------------- 1016 (1236)
T ss_pred HHHHhhhcchHHHHHhcccceeeechhccCC--------------CHH-HHH----------------------------
Confidence 9999999999999988888766666555321 111 000
Q ss_pred HHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHH
Q 013867 195 NAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVAL 274 (435)
Q Consensus 195 ~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l 274 (435)
...+++.+.....+-..|...+.||++++ ..- .|+.| |. ++
T Consensus 1017 ---------------------------~y~nlal~~f~~~~~~~al~~~~ra~~l~--~Ls------~ge~h--P~--~a 1057 (1236)
T KOG1839|consen 1017 ---------------------------AYGNLALYEFAVKNLSGALKSLNRALKLK--LLS------SGEDH--PP--TA 1057 (1236)
T ss_pred ---------------------------HhhHHHHHHHhccCccchhhhHHHHHHhh--ccc------cCCCC--Cc--hh
Confidence 00011222334445666777788888884 222 22111 11 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc-
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK- 353 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k- 353 (435)
.+.+|++.++...++++.|..+.+.|+++.++++|+++-.++.+..-+|.++..++++..| ...++-...|++
T Consensus 1058 ~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~a------l~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1058 LSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNA------LEHEKVTYGIYKE 1131 (1236)
T ss_pred hhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHH------HHHHhhHHHHHHH
Confidence 3558999999999999999999999999999999999999999999999999999998766 788889999994
Q ss_pred CCCCCCCchhhhhccHH
Q 013867 354 APPLESEGVETKVDRTD 370 (435)
Q Consensus 354 ~~~~~hp~~a~~l~nla 370 (435)
.+|++|+.+..+-.++-
T Consensus 1132 qlg~~hsrt~~S~~~~~ 1148 (1236)
T KOG1839|consen 1132 QLGPDHSRTKESSEWLN 1148 (1236)
T ss_pred hhCCCcccchhhHHHHH
Confidence 67999999886665444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-05 Score=83.43 Aligned_cols=174 Identities=11% Similarity=0.050 Sum_probs=96.9
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI-LGVRVAAMEALAGLY 156 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~-L~i~vaale~L~g~~ 156 (435)
..|+|++|+..+.++.+.. |+-...+.-.|.++..+|++++|.+.|+++.+..... +.++
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~----------- 156 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVE----------- 156 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHH-----------
Confidence 3689999999999877543 3334555568899999999999999999975432211 1110
Q ss_pred HhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhch
Q 013867 157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNF 236 (435)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y 236 (435)
.....+...++. +++|... .. .+-... |....+...++.+|..+|+|
T Consensus 157 -------------~~~a~l~l~~~~--~~~Al~~--l~--------~l~~~~--------P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 157 -------------IARTRILLAQNE--LHAARHG--VD--------KLLEMA--------PRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred -------------HHHHHHHHHCCC--HHHHHHH--HH--------HHHHhC--------CCCHHHHHHHHHHHHHHhhH
Confidence 011222222221 3222111 11 111111 33345556667778888888
Q ss_pred HHHHHHHHHHHHHHH---H---------h---cc--cCCC--CCcc-cccccchH--HHHHHHHHHHHHHHHcCCHHHHH
Q 013867 237 LLAKKFYQKVIEVLA---E---------Q---KD--FSDM--NTLG-SCNMALEE--VALAATFALGQLEAHMGNFGDAE 294 (435)
Q Consensus 237 ~eAe~ly~rAL~I~~---~---------~---~~--~~~~--~~l~-~~~~~~~~--~~l~~l~nLa~ly~~qG~y~eAe 294 (435)
++|++++++.++... . . .. ..+. ..+- .-...|++ -.......+|.++..+|++++|+
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 204 QALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 888887777763300 0 0 00 0000 0000 00001210 01234467899999999999999
Q ss_pred HHHHHHHHH
Q 013867 295 EILTRTLTK 303 (435)
Q Consensus 295 ~l~~rAL~I 303 (435)
..+++++.+
T Consensus 284 ~~l~~~l~~ 292 (409)
T TIGR00540 284 EIIFDGLKK 292 (409)
T ss_pred HHHHHHHhh
Confidence 999999985
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.2e-08 Score=66.65 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC-CCCCCCc
Q 013867 315 VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA-PPLESEG 361 (435)
Q Consensus 315 va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~-~~~~hp~ 361 (435)
|+.+++|||.+|..+|++++| +.+++++++|++. +|++|||
T Consensus 1 ta~~~~~la~~~~~~g~~~~A------~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEA------LELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHH------HHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchh------hHHHHHHHHHHHHHhcccccC
Confidence 689999999999999998776 9999999999965 5999996
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.8e-06 Score=78.98 Aligned_cols=91 Identities=15% Similarity=0.239 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
..+.++|.+|..+|+|++|..+|++++.+. +++|..+..+.++|.+|...|++++| +..|++++.+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~-- 102 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKA------LEYYHQALELN-- 102 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC--
Confidence 467899999999999999999999999974 56777889999999999999998877 88999999974
Q ss_pred CCCCCCchhhhhccHHHHHHHhcCHHHHh
Q 013867 355 PPLESEGVETKVDRTDIVALARGGYAEAL 383 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~a~G~yaeal 383 (435)
|+....+.+++.++..+|+...+.
T Consensus 103 -----p~~~~~~~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 103 -----PKQPSALNNIAVIYHKRGEKAEEA 126 (172)
T ss_pred -----cccHHHHHHHHHHHHHcCChHhHh
Confidence 343455667888888777655443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.5e-06 Score=91.90 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
.+.+...|...|+.++|+.+|++..+. | + .|+++ +++.|-..+.+.|++++|..+|++...
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g------~-----~Pd~~---T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVES-----G------V-----NPDEV---TFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----C------C-----CCCcc---cHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 344556677888888888888876533 2 1 13332 244555568889999999998887653
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
.+ | -.|++ .++++|..+|.+.|+.++|
T Consensus 618 ~~----g-i~P~~-~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 618 KY----S-ITPNL-KHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred Hh----C-CCCch-HHHHHHHHHHHhCCCHHHH
Confidence 32 2 34554 7789999999999998777
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-06 Score=73.43 Aligned_cols=96 Identities=11% Similarity=0.074 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
.+.++|..+..+|+|++|...|++++.. .|++|....++.++|.+|...|++++| ..+|++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~~~~~~--- 69 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADA------AKAFLAVVKKY--- 69 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHH------HHHHHHHHHHC---
Confidence 4689999999999999999999999865 478888889999999999999998776 88899888754
Q ss_pred CCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 356 PLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
|+++.+...+.+++.++..+|++.+|+...
T Consensus 70 -p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 99 (119)
T TIGR02795 70 -PKSPKAPDALLKLGMSLQELGDKEKAKATL 99 (119)
T ss_pred -CCCCcccHHHHHHHHHHHHhCChHHHHHHH
Confidence 566666667788999999988888777655
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.3e-07 Score=83.53 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=90.7
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH 312 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~H 312 (435)
.++.++++..++++|+. . |+ ......+||.+|..+|+|++|...|++|+.+.
T Consensus 52 ~~~~~~~i~~l~~~L~~-----------~-------P~--~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-------- 103 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-----------N-------PQ--NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-------- 103 (198)
T ss_pred chhHHHHHHHHHHHHHH-----------C-------CC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------
Confidence 57788999999999988 1 11 12467899999999999999999999999863
Q ss_pred hhHHHHHHHHHHH-HHHhhhh--hhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 313 PKVGVVLTCLALM-FRNKAMQ--EHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 313 P~va~~L~nLA~l-y~~qG~~--e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
|+-...+.++|.+ |...|++ ++| ..++++++++- |+....+.+++.++..+|+|++|...++
T Consensus 104 P~~~~~~~~lA~aL~~~~g~~~~~~A------~~~l~~al~~d-------P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 104 GENAELYAALATVLYYQAGQHMTPQT------REMIDKALALD-------ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcHHH------HHHHHHHHHhC-------CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566777899986 5777874 444 89999998876 3334577889999999999999988763
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.7e-05 Score=87.11 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=34.1
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
.|++++|..+|++.- .|++ .++|.|-..|.+.|++++|+++|++...
T Consensus 235 ~g~~~~A~~lf~~m~----------~~d~-~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 235 CGDVVSARLVFDRMP----------RRDC-ISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred CCCHHHHHHHHhcCC----------CCCc-chhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 468888888888742 1222 4678888888888888888888877543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-05 Score=83.92 Aligned_cols=218 Identities=13% Similarity=0.076 Sum_probs=122.5
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh---hHH-HHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS---ILG-VRVAAMEALA 153 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~---~L~-i~vaale~L~ 153 (435)
.+|+|++|+..+++.++.. |+||.+ +.-++.+|..+|+|++|++++.+..+.... .+. .+..+.-.+.
T Consensus 165 ~~g~~~~Al~~l~~~~~~~-----P~~~~a---l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVA-----PRHPEV---LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HCCCHHHHHHHHHHHHhcC-----CCCHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999998554 666654 556689999999999999888776543211 000 0000000000
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccc-----cccchhHHHHHHHH
Q 013867 154 GLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQE-----EEGCTGSAALSYGE 228 (435)
Q Consensus 154 g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~-----~~~~~~~~a~~la~ 228 (435)
..... ..+ + .....+..-+-...+ .+.+.....+.+. ...|+++.|... ..+.....+.-++.
T Consensus 237 ~~~~~-~~~--~-~~l~~~w~~lp~~~~---~~~~~~~~~A~~l-----~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~ 304 (398)
T PRK10747 237 DQAMA-DQG--S-EGLKRWWKNQSRKTR---HQVALQVAMAEHL-----IECDDHDTAQQIILDGLKRQYDERLVLLIPR 304 (398)
T ss_pred HHHHH-hcC--H-HHHHHHHHhCCHHHh---CCHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHhcCCCHHHHHHHhh
Confidence 00000 000 0 000111000000000 0111111111111 122332222110 01112233333433
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 229 ~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
+ ..|++++|....++.++- + |+++ ..+.-+|.++..+|+|++|+..|++++++
T Consensus 305 l--~~~~~~~al~~~e~~lk~---------~---------P~~~--~l~l~lgrl~~~~~~~~~A~~~le~al~~----- 357 (398)
T PRK10747 305 L--KTNNPEQLEKVLRQQIKQ---------H---------GDTP--LLWSTLGQLLMKHGEWQEASLAFRAALKQ----- 357 (398)
T ss_pred c--cCCChHHHHHHHHHHHhh---------C---------CCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence 3 459999999888887755 1 1111 24568999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 309 GSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 309 G~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+|+... +.-||.++..+|+.++| ..+|+++|...
T Consensus 358 ---~P~~~~-~~~La~~~~~~g~~~~A------~~~~~~~l~~~ 391 (398)
T PRK10747 358 ---RPDAYD-YAWLADALDRLHKPEEA------AAMRRDGLMLT 391 (398)
T ss_pred ---CCCHHH-HHHHHHHHHHcCCHHHH------HHHHHHHHhhh
Confidence 566544 44799999999998877 89999999876
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.7e-05 Score=88.10 Aligned_cols=256 Identities=12% Similarity=-0.005 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHhhhccCChhcH---HHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 60 PVVLQMINYALSHARSQKSDESY---SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y---~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
+.|.++|+.|..-.++. .++| |+|+.-+++.+..+. ...+.||..-+.....=.++...|++++++..|+....
T Consensus 244 ~~~a~~vr~a~~~~~~~--~~r~~~~d~ala~~~~l~~~~~-~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 244 DAAAEQVRMAVLPTRSE--TERFDIADKALADYQNLLTRWG-KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHhhcccccccc--hhhHHHHHHHHHHHHHHHhhcc-CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 45778888876543321 2344 456666666665554 34567777777777777889999999999999997542
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH-----------------HHHhcC-CCchhchhhHHHHHHHHH
Q 013867 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQ-----------------LCEKHK-PENYKTYGAVNSRANAVK 198 (435)
Q Consensus 137 i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~-----------------l~~~~~-~~~~~eaeal~~~a~Ai~ 198 (435)
-... +... +...++-.|+..++...|+.++..++. |+-... ..+|++|..+....+.-.
T Consensus 321 ~~~~-~P~y--~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 321 EGYK-MPDY--ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred cCCC-CCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 2111 1111 334555667777877777777665422 111111 112333322211111100
Q ss_pred H-HHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHH
Q 013867 199 G-LVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT 277 (435)
Q Consensus 199 ~-~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l 277 (435)
- .+...|+. ...-+|+....-..++.++--.|++.+|+..+++.+.+ .+| | ...+
T Consensus 398 p~~~~~~~~~----~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-----------aP~--n-------~~l~ 453 (822)
T PRK14574 398 PYQVGVYGLP----GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-----------APA--N-------QNLR 453 (822)
T ss_pred CcEEeccCCC----CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCC--C-------HHHH
Confidence 0 00001100 01223555555566778888999999999999999887 223 1 1346
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCC
Q 013867 278 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPL 357 (435)
Q Consensus 278 ~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~ 357 (435)
..+|.++..+|++.+|+..|++++.+ ||+-..+...+|.++..+|++.+| +.+....++.. |
T Consensus 454 ~~~A~v~~~Rg~p~~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A------~~~~~~l~~~~----P 515 (822)
T PRK14574 454 IALASIYLARDLPRKAEQELKAVESL--------APRSLILERAQAETAMALQEWHQM------ELLTDDVISRS----P 515 (822)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHH------HHHHHHHHhhC----C
Confidence 79999999999999999999888765 788888899999999999997766 66666666554 6
Q ss_pred CCCchh
Q 013867 358 ESEGVE 363 (435)
Q Consensus 358 ~hp~~a 363 (435)
+++.+.
T Consensus 516 e~~~~~ 521 (822)
T PRK14574 516 EDIPSQ 521 (822)
T ss_pred CchhHH
Confidence 777544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-06 Score=74.58 Aligned_cols=91 Identities=16% Similarity=0.053 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
..+.++|..|..+|+|++|..+|++++.+ +|.....+.++|.+|..+|++++| ...|++++++.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~-- 81 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEA------IDAYALAAALD-- 81 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhcC--
Confidence 45789999999999999999999998885 466678889999999999998766 88999988874
Q ss_pred CCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 355 PPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
|+......+++.++...|++++|+..+
T Consensus 82 -----p~~~~~~~~la~~~~~~g~~~~A~~~~ 108 (135)
T TIGR02552 82 -----PDDPRPYFHAAECLLALGEPESALKAL 108 (135)
T ss_pred -----CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444456678999999999999887765
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.9e-06 Score=72.91 Aligned_cols=114 Identities=21% Similarity=0.110 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
...++|.++..+|+.++|+++|++|++ .|.+-+.-...+.++|..|+..|++++| +.+++++++-+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA------~~~L~~~~~~~--- 68 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEA------LALLEEALEEF--- 68 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC---
Confidence 357899999999999999999999988 4888888888999999999999998877 78888886532
Q ss_pred CCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhHHHHHHHHHHHHh
Q 013867 356 PLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAW 404 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~eae~~~~~a~~~~ 404 (435)
|+.+.....--.+++++...|++.||+.....-..+--..++.|...|
T Consensus 69 -p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 69 -PDDELNAALRVFLALALYNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred -CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221111111123778888999999999887554444333444444433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.4e-05 Score=77.74 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=79.4
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|..+.+..-.|.++.-.++|++|..=|++|+.+. |++ +-+..-|+.+.++|+++++++..
T Consensus 391 p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~------------------pe~--~~~~iQl~~a~Yr~~k~~~~m~~ 450 (606)
T KOG0547|consen 391 PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD------------------PEN--AYAYIQLCCALYRQHKIAESMKT 450 (606)
T ss_pred CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC------------------hhh--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444556666788889988888888771 221 12456788899999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
|+.+.. .-|.-..++|-.|.++-.|+++++| +..|..|+++-..
T Consensus 451 Fee~kk--------kFP~~~Evy~~fAeiLtDqqqFd~A------~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 451 FEEAKK--------KFPNCPEVYNLFAEILTDQQQFDKA------VKQYDKAIELEPR 494 (606)
T ss_pred HHHHHH--------hCCCCchHHHHHHHHHhhHHhHHHH------HHHHHHHHhhccc
Confidence 999876 4588888999999999999998877 8889988887643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=9e-05 Score=83.89 Aligned_cols=305 Identities=12% Similarity=0.007 Sum_probs=149.4
Q ss_pred cCCCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 53 INGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAES-WRGISLLAMSTLLYESGNYVEAIEKL 131 (435)
Q Consensus 53 ~~g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp-~~A~~l~nLa~ly~~qGky~eA~~l~ 131 (435)
++.|+||.+.-. -|+...| +|+|++|+..|++++++. |+++ .+. .+..++...|++++|+..+
T Consensus 28 ~~~p~~~~~~y~---~aii~~r----~Gd~~~Al~~L~qaL~~~-----P~~~~av~----dll~l~~~~G~~~~A~~~~ 91 (822)
T PRK14574 28 VVNPAMADTQYD---SLIIRAR----AGDTAPVLDYLQEESKAG-----PLQSGQVD----DWLQIAGWAGRDQEVIDVY 91 (822)
T ss_pred ccCccchhHHHH---HHHHHHh----CCCHHHHHHHHHHHHhhC-----ccchhhHH----HHHHHHHHcCCcHHHHHHH
Confidence 468888884332 3333333 689999999999999766 3332 222 8888888999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccc
Q 013867 132 QKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESG 211 (435)
Q Consensus 132 ~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a 211 (435)
+++.+-.... .-.+..++.++..+|+++.|..++..++..- +. +.+.+. .. .....-.++.++|
T Consensus 92 eka~~p~n~~----~~~llalA~ly~~~gdyd~Aiely~kaL~~d----P~---n~~~l~--gL---a~~y~~~~q~~eA 155 (822)
T PRK14574 92 ERYQSSMNIS----SRGLASAARAYRNEKRWDQALALWQSSLKKD----PT---NPDLIS--GM---IMTQADAGRGGVV 155 (822)
T ss_pred HHhccCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CC---CHHHHH--HH---HHHHhhcCCHHHH
Confidence 9986211000 1112233455666677666655544433221 10 111111 00 0000011111111
Q ss_pred ccc------cccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHH
Q 013867 212 LQE------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA 285 (435)
Q Consensus 212 ~~~------~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~ 285 (435)
... ..|.... ...++.+++.++++.+|+..|+++++.. |+ ....+..+..++.
T Consensus 156 l~~l~~l~~~dp~~~~-~l~layL~~~~~~~~~AL~~~ekll~~~------------------P~--n~e~~~~~~~~l~ 214 (822)
T PRK14574 156 LKQATELAERDPTVQN-YMTLSYLNRATDRNYDALQASSEAVRLA------------------PT--SEEVLKNHLEILQ 214 (822)
T ss_pred HHHHHHhcccCcchHH-HHHHHHHHHhcchHHHHHHHHHHHHHhC------------------CC--CHHHHHHHHHHHH
Confidence 100 0121111 1333445555666666777777776660 00 0123445556666
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCCh-----hHHHHHHHHHHHHHHh--hhhhhhhhhHHHHHHHHHHHHHhcCCCCC
Q 013867 286 HMGNFGDAEEILTRTLTKTEELFGSHHP-----KVGVVLTCLALMFRNK--AMQEHSSALLIQEGLYRRALEFLKAPPLE 358 (435)
Q Consensus 286 ~qG~y~eAe~l~~rAL~I~e~~lG~~HP-----~va~~L~nLA~ly~~q--G~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~ 358 (435)
..|-..-|+++.++- ...|-++|- +.+..+.++|...... .++..+ ..|..-|.+.+..+...++.
T Consensus 215 ~~~~~~~a~~l~~~~----p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~---d~ala~~~~l~~~~~~~p~~ 287 (822)
T PRK14574 215 RNRIVEPALRLAKEN----PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA---DKALADYQNLLTRWGKDPEA 287 (822)
T ss_pred HcCCcHHHHHHHHhC----ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH---HHHHHHHHHHHhhccCCCcc
Confidence 666666666555531 111111110 1233444444333221 222221 22334444444444333556
Q ss_pred CCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhHHHHHH----H-HHHHHhcccchhHHHHhcc
Q 013867 359 SEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMK----R-WAEAAWRNRRVSLAEALNF 417 (435)
Q Consensus 359 hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~eae~~~----~-~a~~~~~~~r~~l~~~l~~ 417 (435)
|+.......-+=+++..+|+|++++..++.=..++.+|= . .|.++-..+++.-|+.+..
T Consensus 288 ~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 288 QADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 666433333345566789999999887744343443211 1 3444445666665655554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.3e-06 Score=87.80 Aligned_cols=99 Identities=11% Similarity=0.120 Sum_probs=81.1
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
-|.-+...|+|++|+.+|++||++. + . ....+.++|.+|..+|+|++|...+++|+.+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--------P-~-----------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-- 65 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD--------P-N-----------NAELYADRAQANIKLGNFTEAVADANKAIEL-- 65 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--------C-C-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 3555678999999999999999881 1 1 1245789999999999999999999999997
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCch
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGV 362 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~ 362 (435)
.|+-+..+.++|.+|...|+|++| +..|++++++. |+++.+
T Consensus 66 ------~P~~~~a~~~lg~~~~~lg~~~eA------~~~~~~al~l~----P~~~~~ 106 (356)
T PLN03088 66 ------DPSLAKAYLRKGTACMKLEEYQTA------KAALEKGASLA----PGDSRF 106 (356)
T ss_pred ------CcCCHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHhC----CCCHHH
Confidence 355566799999999999998776 89999999876 455543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.2e-06 Score=66.11 Aligned_cols=64 Identities=20% Similarity=0.303 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh-hhhhhhhhHHHHHHHHHHHHHh
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA-MQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG-~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
..+.++|..+..+|+|++|+..|++|+.+ +|+-+..+.|+|.+|..+| ++++| ...|++|+++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A------~~~~~~al~l~ 68 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEA------IEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHH------HHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHH------HHHHHHHHHcC
Confidence 35789999999999999999999999998 5777789999999999999 77766 89999999863
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.9e-06 Score=74.66 Aligned_cols=110 Identities=11% Similarity=-0.004 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 273 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 273 ~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++..+..+|..+..+|+|++|+.+|+-...+ .|....-..|||.+++.+|+|++| ...|.+|+.+-
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~A------I~aY~~A~~L~ 99 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEA------IYAYGRAAQIK 99 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHH------HHHHHHHHhcC
Confidence 4567889999999999999999999887776 688899999999999999998776 89999998775
Q ss_pred cCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhHH------HHHHHHHHHH
Q 013867 353 KAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEG------ERMKRWAEAA 403 (435)
Q Consensus 353 k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~ea------e~~~~~a~~~ 403 (435)
+++|. ...|++.+++..|+.++|...+..-..-. ..++.+|+.+
T Consensus 100 ----~ddp~---~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~ 149 (157)
T PRK15363 100 ----IDAPQ---APWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKM 149 (157)
T ss_pred ----CCCch---HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHH
Confidence 45554 56789999999999999988774333322 4555555544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.5e-06 Score=64.92 Aligned_cols=63 Identities=21% Similarity=0.354 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG-NFGDAEEILTR 299 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG-~y~eAe~l~~r 299 (435)
.+..++|..+..+|+|++|+..|++|+++ . |+ ....++++|.+|..+| +|++|...|++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----------~-------p~--~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL-----------D-------PN--NAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH-----------S-------TT--HHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------C-------CC--CHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 45667899999999999999999999998 1 22 2357899999999999 79999999999
Q ss_pred HHHH
Q 013867 300 TLTK 303 (435)
Q Consensus 300 AL~I 303 (435)
|+++
T Consensus 64 al~l 67 (69)
T PF13414_consen 64 ALKL 67 (69)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9986
|
... |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.1e-06 Score=72.69 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+.+.+|..+..+|+|++|...|+++++- ... +.+ .--+...||.++..+|+|++|...+++
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~---~~d----~~l----------~~~a~l~LA~~~~~~~~~d~Al~~L~~- 110 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALAN---APD----PEL----------KPLARLRLARILLQQGQYDEALATLQQ- 110 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCC----HHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHh-
Confidence 44566788999999999999999999976 111 111 112456899999999999999999855
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRAL 349 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL 349 (435)
.++.+.......-+|.+|..+|++++| ...|++||
T Consensus 111 --------~~~~~~~~~~~~~~Gdi~~~~g~~~~A------~~~y~~Al 145 (145)
T PF09976_consen 111 --------IPDEAFKALAAELLGDIYLAQGDYDEA------RAAYQKAL 145 (145)
T ss_pred --------ccCcchHHHHHHHHHHHHHHCCCHHHH------HHHHHHhC
Confidence 345666777888999999999998877 78899885
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00017 Score=80.21 Aligned_cols=245 Identities=14% Similarity=0.126 Sum_probs=150.4
Q ss_pred CChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh-----H-HH------
Q 013867 77 KSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI-----L-GV------ 144 (435)
Q Consensus 77 ~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~-----L-~i------ 144 (435)
..+|.+++|.-+|.++++.. |+.-..+..-+.+|.+.|++..|.+-|++.+...... . .|
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~--------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN--------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 35789999999999999655 5668888999999999999999999999987654411 0 11
Q ss_pred ------HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhc-------------
Q 013867 145 ------RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAH------------- 205 (435)
Q Consensus 145 ------~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lg------------- 205 (435)
+..++..+-+.. ..|.+..+....+..+.++.+.. .+.+++..++...+
T Consensus 290 ~~~~~~~e~a~~~le~~~-s~~~~~~~~ed~ni~ael~l~~~-----------q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 290 FITHNERERAAKALEGAL-SKEKDEASLEDLNILAELFLKNK-----------QSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred HHHhhHHHHHHHHHHHHH-hhccccccccHHHHHHHHHHHhH-----------HHHHhhHHHHHHhccccCCChhhhhhh
Confidence 111233333322 24444444444444444443322 11222222221111
Q ss_pred ----------CCCccc-----------------------cccc---------ccchhHHHHHHHHHHHHhhchHHHHHHH
Q 013867 206 ----------GNLESG-----------------------LQEE---------EGCTGSAALSYGEYLHATRNFLLAKKFY 243 (435)
Q Consensus 206 ----------g~h~~a-----------------------~~~~---------~~~~~~~a~~la~~~~~~G~y~eAe~ly 243 (435)
-++++. ..+. ..........++..|...|+|.+|.++|
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLL 437 (895)
T ss_pred hhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 000000 0000 1223455566788999999999999999
Q ss_pred HHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 013867 244 QKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLA 323 (435)
Q Consensus 244 ~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA 323 (435)
-....- . ... ......++|..|..+|.|++|.+.|+++|.. -|+...+...|+
T Consensus 438 ~~i~~~----~------~~~---------~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D~Ri~La 490 (895)
T KOG2076|consen 438 SPITNR----E------GYQ---------NAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLDARITLA 490 (895)
T ss_pred HHHhcC----c------ccc---------chhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchhhhhhHH
Confidence 876533 1 111 1124579999999999999999999999974 344455566788
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC-CCCCC--------chhhhhccHHHHHHHhcCHHH
Q 013867 324 LMFRNKAMQEHSSALLIQEGLYRRALEFLKAP-PLESE--------GVETKVDRTDIVALARGGYAE 381 (435)
Q Consensus 324 ~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~-~~~hp--------~~a~~l~nla~~~~a~G~yae 381 (435)
.+|..+|+.|+| +++.+.+ .+||. .-...+-++..++...|+.++
T Consensus 491 sl~~~~g~~Eka-------------lEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 491 SLYQQLGNHEKA-------------LETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHhcCCHHHH-------------HHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 999999997654 5555432 34432 234455566666667776665
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4e-06 Score=76.60 Aligned_cols=100 Identities=14% Similarity=0.081 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
..+....+|..+..+|+|++|+.+|+-...+ ++ . ...-..|||.+++.+|+|.+|...|.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp-~-----------~~~y~~gLG~~~Q~~g~~~~AI~aY~ 93 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DA-W-----------SFDYWFRLGECCQAQKHWGEAIYAYG 93 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------Cc-c-----------cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3456677888899999999999999999988 11 1 11346799999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+|+.+ .++|| ....|+|.+|-..|+.++| +.-|+.|+.+.
T Consensus 94 ~A~~L-----~~ddp---~~~~~ag~c~L~lG~~~~A------~~aF~~Ai~~~ 133 (157)
T PRK15363 94 RAAQI-----KIDAP---QAPWAAAECYLACDNVCYA------IKALKAVVRIC 133 (157)
T ss_pred HHHhc-----CCCCc---hHHHHHHHHHHHcCCHHHH------HHHHHHHHHHh
Confidence 99976 35555 5789999999999998766 89999999998
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.27 E-value=5e-05 Score=79.32 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+-.++|..|..++-..=|.-+|+||++. + |.+. ..+..||..|.+.++.+||+.+|+||
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~----k--------------PnDs--Rlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALEL----K--------------PNDS--RLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhc----C--------------CCch--HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34455566666666666667777776665 1 1111 34568999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHH
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYA 380 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ya 380 (435)
+.... - -...|..||.+|...+++++| -..|++.++....-|...|.+....-.|+.-....++|.
T Consensus 459 i~~~d-----t---e~~~l~~LakLye~l~d~~eA------a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~ 524 (559)
T KOG1155|consen 459 ILLGD-----T---EGSALVRLAKLYEELKDLNEA------AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFD 524 (559)
T ss_pred Hhccc-----c---chHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchH
Confidence 87532 1 468899999999999997766 788999999986668888877777777999999999999
Q ss_pred HHhh
Q 013867 381 EALS 384 (435)
Q Consensus 381 eal~ 384 (435)
+|-.
T Consensus 525 ~As~ 528 (559)
T KOG1155|consen 525 EASY 528 (559)
T ss_pred HHHH
Confidence 9855
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00011 Score=78.58 Aligned_cols=144 Identities=13% Similarity=0.173 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHH----hcc--c--CCCCCcc----cccccchHHHHHHHHHHHHHHHHcCCH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAE----QKD--F--SDMNTLG----SCNMALEEVALAATFALGQLEAHMGNF 290 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~----~~~--~--~~~~~l~----~~~~~~~~~~l~~l~nLa~ly~~qG~y 290 (435)
..-.|.+++.+|+|++|...|+.-+.=-.+ ... . ......+ ..+.+|+. +-..++|.|..+...|+|
T Consensus 113 l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~-syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 113 LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPED-SYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcc-hHHHHHHHHHHHHhcccH
Confidence 334578889999999999999987321000 000 0 0000000 00011211 223567999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChh-------HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchh
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPK-------VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 363 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~-------va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a 363 (435)
++|+++++.|+.|..+.|-.+.-. ++++-.-||.+|+.+|+-++| -..|...+ +....|.|..+
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea------~~iy~~~i---~~~~~D~~~~A 262 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA------SSIYVDII---KRNPADEPSLA 262 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH------HHHHHHHH---HhcCCCchHHH
Confidence 999999999999988887654433 788889999999999998877 46665543 34467888899
Q ss_pred hhhccHHHHHHHh
Q 013867 364 TKVDRTDIVALAR 376 (435)
Q Consensus 364 ~~l~nla~~~~a~ 376 (435)
...||+-.+-..+
T Consensus 263 v~~NNLva~~~d~ 275 (652)
T KOG2376|consen 263 VAVNNLVALSKDQ 275 (652)
T ss_pred HHhcchhhhcccc
Confidence 9999998886655
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.9e-06 Score=62.07 Aligned_cols=90 Identities=22% Similarity=0.279 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
++.++|..|..+|+|++|...+++++.+. +++| .++.++|.+|..+|++++| ..+|++++.+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~a------~~~~~~~~~~~~-- 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-----PDNA---DAYYNLAAAYYKLGKYEEA------LEDYEKALELDP-- 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-----CccH---HHHHHHHHHHHHHHHHHHH------HHHHHHHHhCCC--
Confidence 35789999999999999999999998862 3343 7789999999999998776 889999988752
Q ss_pred CCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 356 PLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
.++ ....+++.++..+|++.+|....
T Consensus 66 --~~~---~~~~~~~~~~~~~~~~~~a~~~~ 91 (100)
T cd00189 66 --DNA---KAYYNLGLAYYKLGKYEEALEAY 91 (100)
T ss_pred --cch---hHHHHHHHHHHHHHhHHHHHHHH
Confidence 222 45667888999999999887665
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.7e-06 Score=64.20 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=54.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 279 ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 279 nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.+|..|..+|+|++|+..|++++. .+|+-...+..+|.+|..+|++++| +..|++++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A------~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEA------LAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHH------HHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence 579999999999999999999996 5699999999999999999998877 89999999875
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.6e-05 Score=85.02 Aligned_cols=62 Identities=10% Similarity=0.049 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+...+|.+|.++|++++|...|+|+|++ . + + ...++||+|-.|..+ +.++|+.++.+|+
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~---D-----~----------~--n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKA---D-----R----------D--NPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc---C-----c----------c--cHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 6677899999999999999999999999 1 1 1 125789999999999 9999999999997
Q ss_pred HHH
Q 013867 302 TKT 304 (435)
Q Consensus 302 ~I~ 304 (435)
..+
T Consensus 177 ~~~ 179 (906)
T PRK14720 177 YRF 179 (906)
T ss_pred HHH
Confidence 653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00012 Score=76.36 Aligned_cols=184 Identities=13% Similarity=0.077 Sum_probs=120.2
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
..|+|++|...|+.+| .++.+.-..+.|+|..+..+|+.++|+++|-+--.|....
T Consensus 502 ~ngd~dka~~~ykeal--------~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn---------------- 557 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEAL--------NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN---------------- 557 (840)
T ss_pred ecCcHHHHHHHHHHHH--------cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh----------------
Confidence 3577888888888888 3445677788888888888888888888887653322111
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFL 237 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~ 237 (435)
++ +.-.++++++.-. .-++||..+.+... + -|+.+.+...+|.+|...|+-.
T Consensus 558 -------~e-vl~qianiye~le-----------d~aqaie~~~q~~s--------l-ip~dp~ilskl~dlydqegdks 609 (840)
T KOG2003|consen 558 -------AE-VLVQIANIYELLE-----------DPAQAIELLMQANS--------L-IPNDPAILSKLADLYDQEGDKS 609 (840)
T ss_pred -------HH-HHHHHHHHHHHhh-----------CHHHHHHHHHHhcc--------c-CCCCHHHHHHHHHHhhcccchh
Confidence 11 1112333333211 22333332211110 0 1445577888999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 013867 238 LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV 317 (435)
Q Consensus 238 eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~ 317 (435)
+|.++|-..-.. + +||. -+.--||.-|.+.-=+++|..+|++|--| .|.+..
T Consensus 610 qafq~~ydsyry------------f-p~ni-------e~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~k 661 (840)
T KOG2003|consen 610 QAFQCHYDSYRY------------F-PCNI-------ETIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSK 661 (840)
T ss_pred hhhhhhhhcccc------------c-Ccch-------HHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHH
Confidence 999887544322 1 2332 23456788888888888899999998766 588888
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 013867 318 VLTCLALMFRNKAMQEHSSALLIQEGLYRR 347 (435)
Q Consensus 318 ~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~r 347 (435)
.---+|..+++.|.|.+| ..+|+.
T Consensus 662 wqlmiasc~rrsgnyqka------~d~yk~ 685 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKA------FDLYKD 685 (840)
T ss_pred HHHHHHHHHHhcccHHHH------HHHHHH
Confidence 888999999999996555 455554
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.6e-05 Score=91.06 Aligned_cols=184 Identities=16% Similarity=0.099 Sum_probs=139.8
Q ss_pred cCCCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 53 INGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQ 132 (435)
Q Consensus 53 ~~g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ 132 (435)
+.|-.||+++..+--+|..+-+ .|++++|+.+-.++.-|.++.+|.+||.+...+.||+...+...+-..|...+
T Consensus 964 v~~~~h~~~~~~~~~La~l~~~----~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~- 1038 (1236)
T KOG1839|consen 964 VMGVLHPEVASKYRSLAKLSNR----LGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSL- 1038 (1236)
T ss_pred hhhhcchhHHHHHHHHHHHHhh----hcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhH-
Confidence 5688999999999999999854 67999999999999999999999999999999999995544444222222111
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccc
Q 013867 133 KVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGL 212 (435)
Q Consensus 133 ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~ 212 (435)
.+++.+..+ ..|.+||.
T Consensus 1039 -----------------------------------------------------------~ra~~l~~L--s~ge~hP~-- 1055 (1236)
T KOG1839|consen 1039 -----------------------------------------------------------NRALKLKLL--SSGEDHPP-- 1055 (1236)
T ss_pred -----------------------------------------------------------HHHHHhhcc--ccCCCCCc--
Confidence 122222221 13344543
Q ss_pred cccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHH-HHHHHHHHHHHcCCHH
Q 013867 213 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-ATFALGQLEAHMGNFG 291 (435)
Q Consensus 213 ~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~-~l~nLa~ly~~qG~y~ 291 (435)
...+-.++..+++..++|+.|..+-+.|+++-++.. | |.+...+ +.+-++.++..+|.|.
T Consensus 1056 ------~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~--------g-----~~~l~~~~~~~~~a~l~~s~~dfr 1116 (1236)
T KOG1839|consen 1056 ------TALSFINLELLLLGVEEADTALRYLESALAKNKKVL--------G-----PKELETALSYHALARLFESMKDFR 1116 (1236)
T ss_pred ------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc--------C-----ccchhhhhHHHHHHHHHhhhHHHH
Confidence 334445677788999999999999999999854433 3 1111222 4567899999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 013867 292 DAEEILTRTLTKTEELFGSHHPKVGVVLTCLA 323 (435)
Q Consensus 292 eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA 323 (435)
.|....+.+..|+.+.+|++|+++..+-..+=
T Consensus 1117 ~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~~ 1148 (1236)
T KOG1839|consen 1117 NALEHEKVTYGIYKEQLGPDHSRTKESSEWLN 1148 (1236)
T ss_pred HHHHHHhhHHHHHHHhhCCCcccchhhHHHHH
Confidence 99999999999999999999999998877765
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.7e-06 Score=66.74 Aligned_cols=84 Identities=23% Similarity=0.270 Sum_probs=61.0
Q ss_pred HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 232 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 232 ~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
.+|+|++|+.+|+++++.. .. . + ....+.+||.+|..+|+|++|.+++++ +.+ ++.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~---~~---~---------~---~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-----~~~ 56 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELD---PT---N---------P---NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-----DPS 56 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHH---CG---T---------H---HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-----HHC
T ss_pred CCccHHHHHHHHHHHHHHC---CC---C---------h---hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-----CCC
Confidence 3799999999999999982 10 0 1 113466799999999999999999999 332 234
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 013867 312 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRA 348 (435)
Q Consensus 312 HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rA 348 (435)
|++ ...-+|..|..+|+|++| ...|++|
T Consensus 57 ~~~---~~~l~a~~~~~l~~y~eA------i~~l~~~ 84 (84)
T PF12895_consen 57 NPD---IHYLLARCLLKLGKYEEA------IKALEKA 84 (84)
T ss_dssp HHH---HHHHHHHHHHHTT-HHHH------HHHHHHH
T ss_pred CHH---HHHHHHHHHHHhCCHHHH------HHHHhcC
Confidence 444 444569999999998877 7777765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.2e-05 Score=76.64 Aligned_cols=127 Identities=17% Similarity=0.143 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
...++..++......|+|.+|+..++||..+. ++. -...+.||..|...|++++|..-|.
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--------p~d------------~~~~~~lgaaldq~Gr~~~Ar~ay~ 158 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--------PTD------------WEAWNLLGAALDQLGRFDEARRAYR 158 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--------CCC------------hhhhhHHHHHHHHccChhHHHHHHH
Confidence 33455557777889999999999999999871 111 1356889999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcC
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG 378 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ 378 (435)
||++.. ++- ...+||||..|.-+|+++.| +.++.++-.--.. + -...+|++.+...+|+
T Consensus 159 qAl~L~-----~~~---p~~~nNlgms~~L~gd~~~A------~~lll~a~l~~~a------d-~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 159 QALELA-----PNE---PSIANNLGMSLLLRGDLEDA------ETLLLPAYLSPAA------D-SRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHhc-----cCC---chhhhhHHHHHHHcCCHHHH------HHHHHHHHhCCCC------c-hHHHHHHHHHHhhcCC
Confidence 999863 233 46789999999999998877 7888776543321 1 3467899999999999
Q ss_pred HHHHhhHh
Q 013867 379 YAEALSVQ 386 (435)
Q Consensus 379 yaeal~~~ 386 (435)
..+|..+-
T Consensus 218 ~~~A~~i~ 225 (257)
T COG5010 218 FREAEDIA 225 (257)
T ss_pred hHHHHhhc
Confidence 98887764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00073 Score=75.29 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH--HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV--GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v--a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
-+.+++.+|..-|+|++|.++|.+... ||.. +....++|.+|..+|.|++| ...|+++|...
T Consensus 416 L~~d~a~al~~~~~~~~Al~~l~~i~~---------~~~~~~~~vw~~~a~c~~~l~e~e~A------~e~y~kvl~~~- 479 (895)
T KOG2076|consen 416 LYLDLADALTNIGKYKEALRLLSPITN---------REGYQNAFVWYKLARCYMELGEYEEA------IEFYEKVLILA- 479 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhc---------CccccchhhhHHHHHHHHHHhhHHHH------HHHHHHHHhcC-
Confidence 456899999999999999999998864 3332 66889999999999998776 78888888654
Q ss_pred CCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 354 APPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 354 ~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
|+|-|+.. -|+.++..+|+.++|+..-++
T Consensus 480 ---p~~~D~Ri---~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 480 ---PDNLDARI---TLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred ---CCchhhhh---hHHHHHHhcCCHHHHHHHHhc
Confidence 66666443 367899999999999987644
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00014 Score=73.34 Aligned_cols=75 Identities=12% Similarity=0.071 Sum_probs=49.0
Q ss_pred CCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHH--HHHHHHHHHHcCCHHHHHHHHHH
Q 013867 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGIS--LLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 56 ~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~--l~nLa~ly~~qGky~eA~~l~~r 133 (435)
.+-|.++..+-.|-.-| ..+-..|-......++........+|--+-.. -+.||..|...|-+.+|++.++.
T Consensus 175 a~~p~l~kaLFey~fyh------enDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aekqlqs 248 (478)
T KOG1129|consen 175 AERPTLVKALFEYLFYH------ENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQS 248 (478)
T ss_pred ccChHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHH
Confidence 35677777777766555 12455555555555554443333444333333 46799999999999999999999
Q ss_pred HHH
Q 013867 134 VEN 136 (435)
Q Consensus 134 al~ 136 (435)
+++
T Consensus 249 sL~ 251 (478)
T KOG1129|consen 249 SLT 251 (478)
T ss_pred Hhh
Confidence 864
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00014 Score=76.42 Aligned_cols=205 Identities=17% Similarity=0.149 Sum_probs=127.3
Q ss_pred HHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHH
Q 013867 65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV 144 (435)
Q Consensus 65 m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i 144 (435)
+|.+|..+.... +-.+-...|.++..+. + .-..+|+..|.++.-.++|++|+.=|++++.+....
T Consensus 363 yI~~a~~y~d~~----~~~~~~~~F~~A~~ld-----p---~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~--- 427 (606)
T KOG0547|consen 363 YIKRAAAYADEN----QSEKMWKDFNKAEDLD-----P---ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN--- 427 (606)
T ss_pred HHHHHHHHhhhh----ccHHHHHHHHHHHhcC-----C---CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh---
Confidence 666666664322 2334445555555433 2 233457777777777777777777777776554332
Q ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHH
Q 013867 145 RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAAL 224 (435)
Q Consensus 145 ~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~ 224 (435)
+..+.+.|.-++.... ..+... .+..+++ ++ |.-+.+.+
T Consensus 428 --------------------~~~~iQl~~a~Yr~~k---~~~~m~--~Fee~kk--------kF--------P~~~Evy~ 466 (606)
T KOG0547|consen 428 --------------------AYAYIQLCCALYRQHK---IAESMK--TFEEAKK--------KF--------PNCPEVYN 466 (606)
T ss_pred --------------------hHHHHHHHHHHHHHHH---HHHHHH--HHHHHHH--------hC--------CCCchHHH
Confidence 1122333333332211 222222 2333332 22 23345566
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHH
Q 013867 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA--LGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 225 ~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~n--La~ly~~qG~y~eAe~l~~rAL~ 302 (435)
-+|+++..|++|++|+..|.+|++.- .. .+.-.++ .+.+.+ +.+ .+-.+++++|+.|+++|++
T Consensus 467 ~fAeiLtDqqqFd~A~k~YD~ai~LE---~~-~~~~~v~----------~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 467 LFAEILTDQQQFDKAVKQYDKAIELE---PR-EHLIIVN----------AAPLVHKALLV-LQWKEDINQAENLLRKAIE 531 (606)
T ss_pred HHHHHHhhHHhHHHHHHHHHHHHhhc---cc-ccccccc----------chhhhhhhHhh-hchhhhHHHHHHHHHHHHc
Confidence 68999999999999999999999982 21 1122222 122322 333 3345999999999999998
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
+ .|.-=..+..||.+--+||+.++| ..||++++..-++
T Consensus 532 ~--------Dpkce~A~~tlaq~~lQ~~~i~eA------ielFEksa~lArt 569 (606)
T KOG0547|consen 532 L--------DPKCEQAYETLAQFELQRGKIDEA------IELFEKSAQLART 569 (606)
T ss_pred c--------CchHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHh
Confidence 7 688888999999999999997766 8999999988764
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.7e-05 Score=76.94 Aligned_cols=103 Identities=16% Similarity=0.215 Sum_probs=83.0
Q ss_pred HHHHHHHH-HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 222 AALSYGEY-LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 222 ~a~~la~~-~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.....|.- +..+|+|++|+..|++.+..+ ++. .. .-.+..-||.+|..+|+|++|...|+++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y------P~s-~~----------a~~A~y~LG~~y~~~g~~~~A~~~f~~v 206 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY------PDS-TY----------QPNANYWLGQLNYNKGKKDDAAYYFASV 206 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC------cCC-cc----------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444543 366899999999999999882 111 11 1246789999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+..+ |+||.+..++..+|.+|..+|++++| ...|++.++-+
T Consensus 207 v~~y-----P~s~~~~dAl~klg~~~~~~g~~~~A------~~~~~~vi~~y 247 (263)
T PRK10803 207 VKNY-----PKSPKAADAMFKVGVIMQDKGDTAKA------KAVYQQVIKKY 247 (263)
T ss_pred HHHC-----CCCcchhHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence 8876 79999999999999999999998776 78888887766
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.2e-06 Score=62.01 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=49.3
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 225 ~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
.+|..+..+|+|++|+..|+++++. . |+ ...++..||.++..+|+|++|..+|++++.+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~-----------~-------P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ-----------D-------PD--NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC-----------S-------TT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH-----------C-------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4577889999999999999999966 1 11 2357889999999999999999999999976
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.4e-05 Score=77.84 Aligned_cols=88 Identities=19% Similarity=0.222 Sum_probs=75.1
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013867 231 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 310 (435)
Q Consensus 231 ~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~ 310 (435)
..-++|.+|+..|.+||++ . + .- ..-+||-|.+|.+.|.|+.|.+=.+.||.|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l---~-----P-~n-----------AVyycNRAAAy~~Lg~~~~AVkDce~Al~i------- 144 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIEL---D-----P-TN-----------AVYYCNRAAAYSKLGEYEDAVKDCESALSI------- 144 (304)
T ss_pred HHhhhHHHHHHHHHHHHhc---C-----C-Cc-----------chHHHHHHHHHHHhcchHHHHHHHHHHHhc-------
Confidence 4568899999999999988 1 1 10 123689999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 311 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 311 ~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.|....++.-||.+|..+|++++| +.-|++||+|-
T Consensus 145 -Dp~yskay~RLG~A~~~~gk~~~A------~~aykKaLeld 179 (304)
T KOG0553|consen 145 -DPHYSKAYGRLGLAYLALGKYEEA------IEAYKKALELD 179 (304)
T ss_pred -ChHHHHHHHHHHHHHHccCcHHHH------HHHHHhhhccC
Confidence 688899999999999999998876 77799999886
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00026 Score=73.89 Aligned_cols=230 Identities=18% Similarity=0.206 Sum_probs=142.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC-CC-cchHHHHHHHHHH-------HHhcCCCc
Q 013867 113 AMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG-QD-DTSSVVADKCLQL-------CEKHKPEN 183 (435)
Q Consensus 113 nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g-~~-~~A~~~~~~~~~l-------~~~~~~~~ 183 (435)
|-+.-|.++|+|+.|++.++--..-. -....++.+||-.++.-+| .+ ..|+.+++..+++ +.+++...
T Consensus 424 ~ka~~~lk~~d~~~aieilkv~~~kd---nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 424 NKAGELLKNGDIEGAIEILKVFEKKD---NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIA 500 (840)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHhcc---chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCcee
Confidence 45667889999999999876321110 0112334567766655544 33 4455555544433 11112111
Q ss_pred hhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 013867 184 YKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLG 263 (435)
Q Consensus 184 ~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~ 263 (435)
|. -.-..+|..-.-+.+..+ ..|+ .+..|+|..+..+|+.++|.++|-+--.|.. .
T Consensus 501 f~----ngd~dka~~~ykeal~nd--------asc~-ealfniglt~e~~~~ldeald~f~klh~il~---n-------- 556 (840)
T KOG2003|consen 501 FA----NGDLDKAAEFYKEALNND--------ASCT-EALFNIGLTAEALGNLDEALDCFLKLHAILL---N-------- 556 (840)
T ss_pred ee----cCcHHHHHHHHHHHHcCc--------hHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHHHH---h--------
Confidence 10 000111111111222211 1333 4567788889999999999999999999942 1
Q ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhh-------
Q 013867 264 SCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSS------- 336 (435)
Q Consensus 264 ~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~------- 336 (435)
.+..+.-++.+|..+.+-.+|.++|.|+.. +=|+.|.+ |..||.+|.+.|+-.+|-
T Consensus 557 ---------n~evl~qianiye~led~aqaie~~~q~~s-----lip~dp~i---lskl~dlydqegdksqafq~~ydsy 619 (840)
T KOG2003|consen 557 ---------NAEVLVQIANIYELLEDPAQAIELLMQANS-----LIPNDPAI---LSKLADLYDQEGDKSQAFQCHYDSY 619 (840)
T ss_pred ---------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-----cCCCCHHH---HHHHHHHhhcccchhhhhhhhhhcc
Confidence 234577899999999999999999999875 34677754 678899999999877761
Q ss_pred --------------hhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 337 --------------ALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 337 --------------~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
+|-.--.+.++++..++...+-.|.+.+.---.+.+....|+|..|+.++
T Consensus 620 ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 620 RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 22233456678888886545556664433333677788899999997765
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.2e-05 Score=84.36 Aligned_cols=74 Identities=11% Similarity=-0.034 Sum_probs=64.2
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
.+.-|+.+...+|+|..|. .+|+|++|+.+|+++|++. |+++....+++|+|.+|..+|++++|++.|++|
T Consensus 68 ~~~dP~~a~a~~NLG~AL~----~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLF----SKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred ccCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456778889999999994 3689999999999999876 566666678999999999999999999999999
Q ss_pred HHh
Q 013867 135 ENF 137 (435)
Q Consensus 135 l~i 137 (435)
+++
T Consensus 139 Lel 141 (453)
T PLN03098 139 LRD 141 (453)
T ss_pred HHh
Confidence 875
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00056 Score=69.92 Aligned_cols=101 Identities=18% Similarity=0.216 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc-----CCHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM-----GNFGDA 293 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q-----G~y~eA 293 (435)
+..-+..+|.+|++.|+.+.|-+-|++|..++.. .| .-+| .+-+|...|..+... |.-=+|
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~-~g----drmg---------qv~al~g~Akc~~~~r~~~k~~~Cra 310 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS-LG----DRMG---------QVEALDGAAKCLETLRLQNKICNCRA 310 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh-hh----hhHH---------HHHHHHHHHHHHHHHHHhhcccccch
Confidence 4455677899999999999999999999999642 22 1333 234455555444333 333459
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 294 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 294 e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
.++-+|+++|.+.+ |.+| .|.....-||.+|+.+|..++-
T Consensus 311 le~n~r~levA~~I-G~K~-~vlK~hcrla~iYrs~gl~d~~ 350 (518)
T KOG1941|consen 311 LEFNTRLLEVASSI-GAKL-SVLKLHCRLASIYRSKGLQDEL 350 (518)
T ss_pred hHHHHHHHHHHHHh-hhhH-HHHHHHHHHHHHHHhccchhHH
Confidence 99999999999875 6666 4777888999999999987764
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00092 Score=68.38 Aligned_cols=260 Identities=15% Similarity=0.095 Sum_probs=159.2
Q ss_pred HHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH
Q 013867 64 QMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG 143 (435)
Q Consensus 64 ~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~ 143 (435)
+-+.-|+.+.. +..|.+|+....+.|.-..+. .+.-.+|-.+.++..++|+|.++...---.++...
T Consensus 8 ~q~~~g~~Ly~----s~~~~~al~~w~~~L~~l~~~-----~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~---- 74 (518)
T KOG1941|consen 8 KQIEKGLQLYQ----SNQTEKALQVWTKVLEKLSDL-----MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAR---- 74 (518)
T ss_pred HHHHHHHhHhc----CchHHHHHHHHHHHHHHHHHH-----HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH----
Confidence 33444555522 347899999999998765333 45667788899999999999998643322111110
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHH
Q 013867 144 VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAA 223 (435)
Q Consensus 144 i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a 223 (435)
.++ + +...+...+++.... +-+..+-+++.- -+..-.||.+-+-. .-+.+.
T Consensus 75 ----~~~-----------d--s~~~~ea~lnlar~~--------e~l~~f~kt~~y--~k~~l~lpgt~~~~--~~gq~~ 125 (518)
T KOG1941|consen 75 ----ELE-----------D--SDFLLEAYLNLARSN--------EKLCEFHKTISY--CKTCLGLPGTRAGQ--LGGQVS 125 (518)
T ss_pred ----HHH-----------H--HHHHHHHHHHHHHHH--------HHHHHhhhHHHH--HHHHhcCCCCCccc--ccchhh
Confidence 010 0 001111112221111 222233333332 12222333321111 113455
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
.+++..+-.+|.|+++.+.|+.|+.|..+. +++.+ .+.....||.+|....+|++|.-+..+|++|
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~----~D~~L----------Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~l 191 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNN----DDAML----------ELQVCVSLGSLFAQLKDYEKALFFPCKAAEL 191 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhcc----CCcee----------eeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence 556777778899999999999999995321 22222 2455679999999999999999999999999
Q ss_pred HHHhh-CCCChh-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHH
Q 013867 304 TEELF-GSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAE 381 (435)
Q Consensus 304 ~e~~l-G~~HP~-va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yae 381 (435)
-..+- |.-|.. -+.++..||..|+.+|+.-.| ....+.|..+--..| |.+--+..+--++.+|..+|+.+.
T Consensus 192 v~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA------~e~C~Ea~klal~~G-dra~~arc~~~~aDIyR~~gd~e~ 264 (518)
T KOG1941|consen 192 VNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDA------MECCEEAMKLALQHG-DRALQARCLLCFADIYRSRGDLER 264 (518)
T ss_pred HHhcCcCchhHHHHHHHHHHHHHHHHHhcccccH------HHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHhcccHhH
Confidence 77654 555555 588999999999999997665 677777777763222 223345566667888888885544
Q ss_pred HhhHh
Q 013867 382 ALSVQ 386 (435)
Q Consensus 382 al~~~ 386 (435)
+...+
T Consensus 265 af~rY 269 (518)
T KOG1941|consen 265 AFRRY 269 (518)
T ss_pred HHHHH
Confidence 44433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1e-05 Score=84.67 Aligned_cols=72 Identities=17% Similarity=0.069 Sum_probs=61.9
Q ss_pred cccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHH-HHHHHHHHHHHHcCCHHHH
Q 013867 215 EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVAL-AATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 215 ~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l-~~l~nLa~ly~~qG~y~eA 293 (435)
..|++....+|+|..|..+|+|++|+..|++||++- |++... .+++|+|.+|..+|++++|
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~------------------Pd~aeA~~A~yNLAcaya~LGr~dEA 131 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN------------------PNPDEAQAAYYNKACCHAYREEGKKA 131 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------------------CCchHHHHHHHHHHHHHHHcCCHHHH
Confidence 358888999999999999999999999999999991 111122 3689999999999999999
Q ss_pred HHHHHHHHHHH
Q 013867 294 EEILTRTLTKT 304 (435)
Q Consensus 294 e~l~~rAL~I~ 304 (435)
...|++|+++.
T Consensus 132 la~LrrALels 142 (453)
T PLN03098 132 ADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHhc
Confidence 99999999983
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.6e-05 Score=76.32 Aligned_cols=283 Identities=15% Similarity=0.084 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
..|...-..+-.+. ++-+|.+|+..|..|++.. |+-+.-+.|-+..|.--|+|++|.--+++...+..
T Consensus 47 ~~Ae~~k~~gn~~y----k~k~Y~nal~~yt~Ai~~~--------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd 114 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFY----KQKTYGNALKNYTFAIDMC--------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD 114 (486)
T ss_pred HHHHHHHhhcchHH----HHhhHHHHHHHHHHHHHhC--------ccchhhhchhHHHHHHHHhHhhcccchhhheecCC
Confidence 34555555554443 4558999999999999665 45588999999999999999999999988765543
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCcchHHHHH--------HHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccc
Q 013867 140 SILGVRVAAMEALAGLYLQLGQDDTSSVVAD--------KCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESG 211 (435)
Q Consensus 140 ~~L~i~vaale~L~g~~~~~g~~~~A~~~~~--------~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a 211 (435)
...... ....-++...+.-.+|+...+ +.+..+++--+.++. ++-....+-++-..-...++.++|
T Consensus 115 ~~~k~~----~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~--~pac~~a~~lka~cl~~~~~~~~a 188 (486)
T KOG0550|consen 115 GFSKGQ----LREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSR--EPACFKAKLLKAECLAFLGDYDEA 188 (486)
T ss_pred Cccccc----cchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccC--CchhhHHHHhhhhhhhhcccchhH
Confidence 211000 000001111111111111111 111111111111111 122233333332222234555444
Q ss_pred cccc------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHH
Q 013867 212 LQEE------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA 285 (435)
Q Consensus 212 ~~~~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~ 285 (435)
.... ++....+..--+.+++..++.++|...|+++|.. + ++|...+...|.|..+ -..-+-|+-..
T Consensus 189 ~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-----d-pdh~~sk~~~~~~k~l--e~~k~~gN~~f 260 (486)
T KOG0550|consen 189 QSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL-----D-PDHQKSKSASMMPKKL--EVKKERGNDAF 260 (486)
T ss_pred HHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc-----C-hhhhhHHhHhhhHHHH--HHHHhhhhhHh
Confidence 3211 1222233333456778889999999999999976 2 3343333323333321 22334577888
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 013867 286 HMGNFGDAEEILTRTLTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVET 364 (435)
Q Consensus 286 ~qG~y~eAe~l~~rAL~I~e~~lG~~HP~-va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~ 364 (435)
++|+|.+|.++|+.||.|-. +|-+ ++-.|.|.|.++.+.|+..+| ..-+..|+.|- |....
T Consensus 261 k~G~y~~A~E~Yteal~idP-----~n~~~naklY~nra~v~~rLgrl~ea------isdc~~Al~iD-------~syik 322 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDP-----SNKKTNAKLYGNRALVNIRLGRLREA------ISDCNEALKID-------SSYIK 322 (486)
T ss_pred hccchhHHHHHHHHhhcCCc-----cccchhHHHHHHhHhhhcccCCchhh------hhhhhhhhhcC-------HHHHH
Confidence 99999999999999999854 4544 677899999999999997766 77788888875 34456
Q ss_pred hhccHHHHHHHhcCHHHHhhHh
Q 013867 365 KVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 365 ~l~nla~~~~a~G~yaeal~~~ 386 (435)
.+.-++.+++..++|++|-.-+
T Consensus 323 all~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888885533
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00011 Score=78.28 Aligned_cols=208 Identities=15% Similarity=0.137 Sum_probs=132.6
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
--+-|..|..=-.||++++.- ++=..||.-+++||++. |.-...|-+||.-|..+|.=.+|..++.+=
T Consensus 312 VkqdP~haeAW~~LG~~qaEN----E~E~~ai~AL~rcl~Ld--------P~NleaLmaLAVSytNeg~q~~Al~~L~~W 379 (579)
T KOG1125|consen 312 VKQDPQHAEAWQKLGITQAEN----ENEQNAISALRRCLELD--------PTNLEALMALAVSYTNEGLQNQALKMLDKW 379 (579)
T ss_pred HhhChHHHHHHHHhhhHhhhc----cchHHHHHHHHHHHhcC--------CccHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 356677788888899998543 45679999999999766 667889999999999999999999999775
Q ss_pred HHhhhh--hHHH--------------HHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHH
Q 013867 135 ENFKNS--ILGV--------------RVAAMEALAGLYLQ---LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRAN 195 (435)
Q Consensus 135 l~i~e~--~L~i--------------~vaale~L~g~~~~---~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~ 195 (435)
+....+ .+.+ ....+..+.-++++ +.+....-++ +.++.++-.-. ..|+ +++.++..
T Consensus 380 i~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv-Q~~LGVLy~ls-~efd--raiDcf~~ 455 (579)
T KOG1125|consen 380 IRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDV-QSGLGVLYNLS-GEFD--RAVDCFEA 455 (579)
T ss_pred HHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhH-HhhhHHHHhcc-hHHH--HHHHHHHH
Confidence 322110 0100 00000000000000 0111000011 12222221100 0122 22223332
Q ss_pred HHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHH
Q 013867 196 AVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA 275 (435)
Q Consensus 196 Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~ 275 (435)
|+. - .|+.+..-+.||..+..--+++||+.-|+|||++ .++ .+.
T Consensus 456 AL~-------v---------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-----------qP~---------yVR 499 (579)
T KOG1125|consen 456 ALQ-------V---------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL-----------QPG---------YVR 499 (579)
T ss_pred HHh-------c---------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-----------CCC---------eee
Confidence 222 1 3666777888999999999999999999999999 112 345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 314 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~ 314 (435)
+-.|||.-|..+|-|+||.++|-.||.+.++..+..--.
T Consensus 500 ~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~ 538 (579)
T KOG1125|consen 500 VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAP 538 (579)
T ss_pred eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCC
Confidence 678999999999999999999999999999966654443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00018 Score=70.36 Aligned_cols=89 Identities=20% Similarity=0.151 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
...+.+-+|..|...|++++|..-|.+|++.. . .. | ..++|||..|.-.|++..|+.++.
T Consensus 133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~----~--~~---------p-----~~~nNlgms~~L~gd~~~A~~lll 192 (257)
T COG5010 133 DWEAWNLLGAALDQLGRFDEARRAYRQALELA----P--NE---------P-----SIANNLGMSLLLRGDLEDAETLLL 192 (257)
T ss_pred ChhhhhHHHHHHHHccChhHHHHHHHHHHHhc----c--CC---------c-----hhhhhHHHHHHHcCCHHHHHHHHH
Confidence 34556667888999999999999999999982 1 11 1 246899999999999999999998
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
++-. .++..+ .+..||+.+...||++++|
T Consensus 193 ~a~l-----~~~ad~---~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 193 PAYL-----SPAADS---RVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHh-----CCCCch---HHHHHHHHHHhhcCChHHH
Confidence 8753 334344 3568999999999997766
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00025 Score=63.11 Aligned_cols=121 Identities=14% Similarity=0.139 Sum_probs=84.9
Q ss_pred HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 232 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 232 ~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
..|+++++...+++-+.-. ++. .. ...+...+|..+..+|+|++|...|++++... ++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~------~~s-~y----------a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d 80 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY------PSS-PY----------AALAALQLAKAAYEQGDYDEAKAALEKALANA-----PD 80 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC------CCC-hH----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CC
Confidence 4788888877666655441 111 11 12345679999999999999999999998832 45
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 312 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 312 HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
.+-...+...||.++..+|+|++| ...++. .++.+........++.++.++|++++|...++.
T Consensus 81 ~~l~~~a~l~LA~~~~~~~~~d~A------l~~L~~--------~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 81 PELKPLARLRLARILLQQGQYDEA------LATLQQ--------IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHH------HHHHHh--------ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555677788999999999997766 444432 122222333444689999999999999988743
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=6e-05 Score=77.46 Aligned_cols=91 Identities=11% Similarity=0.024 Sum_probs=76.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP 356 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~ 356 (435)
+...|.-+..+|+|++|+++|++|+.+ .|+-...+.++|.+|..+|++++| +..+++|+++.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eA------l~~~~~Al~l~---- 66 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEA------VADANKAIELD---- 66 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC----
Confidence 456788899999999999999999974 444566889999999999998776 89999999985
Q ss_pred CCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 357 LESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 357 ~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
|+......+++.++...|+|++|+..+..
T Consensus 67 ---P~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 67 ---PSLAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred ---cCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34455677899999999999999987743
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0042 Score=67.16 Aligned_cols=222 Identities=12% Similarity=0.088 Sum_probs=123.8
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
.|+|++|+.+++..- ..-++....+-..|.+|...|++++|+..|+.-++....... ....+....|+..
T Consensus 17 ~g~~~~AL~~L~~~~--------~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~-Yy~~L~~~~g~~~- 86 (517)
T PF12569_consen 17 AGDYEEALEHLEKNE--------KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYD-YYRGLEEALGLQL- 86 (517)
T ss_pred CCCHHHHHHHHHhhh--------hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH-HHHHHHHHHhhhc-
Confidence 589999999998744 333688999999999999999999999999987665432211 1112222333221
Q ss_pred cCCCcchHHHHHHHHHHHHhcCCCchhch---hhH-----HHHHHHHHHHH-HHhcCCCcccccccccchhHHHHHHHHH
Q 013867 159 LGQDDTSSVVADKCLQLCEKHKPENYKTY---GAV-----NSRANAVKGLV-ELAHGNLESGLQEEEGCTGSAALSYGEY 229 (435)
Q Consensus 159 ~g~~~~A~~~~~~~~~l~~~~~~~~~~ea---eal-----~~~a~Ai~~~~-~~lgg~h~~a~~~~~~~~~~~a~~la~~ 229 (435)
+..+........+..-+....+ ..++ -+| ..+...+...+ ..+ .-.++.+..++-.+
T Consensus 87 -~~~~~~~~~~~~~y~~l~~~yp--~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l-----------~KgvPslF~~lk~L 152 (517)
T PF12569_consen 87 -QLSDEDVEKLLELYDELAEKYP--RSDAPRRLPLDFLEGDEFKERLDEYLRPQL-----------RKGVPSLFSNLKPL 152 (517)
T ss_pred -ccccccHHHHHHHHHHHHHhCc--cccchhHhhcccCCHHHHHHHHHHHHHHHH-----------hcCCchHHHHHHHH
Confidence 1111101111111111111111 0000 000 00000011000 011 12234556666667
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG 309 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG 309 (435)
|....+.+--+.+.+.-+.-.+....+.... ....-+|. ..+.+++-||+.|...|+|++|..+..+|++.
T Consensus 153 y~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~--~~~~~~p~-~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h------ 223 (517)
T PF12569_consen 153 YKDPEKAAIIESLVEEYVNSLESNGSFSNGD--DEEKEPPS-TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH------ 223 (517)
T ss_pred HcChhHHHHHHHHHHHHHHhhcccCCCCCcc--ccccCCch-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------
Confidence 7755554444444444443322111111000 00011122 24578889999999999999999999999975
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 310 SHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 310 ~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
-|.+...+..-|.+|..+|++++|
T Consensus 224 --tPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 224 --TPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 588899999999999999998777
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00082 Score=69.70 Aligned_cols=81 Identities=21% Similarity=0.181 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH
Q 013867 236 FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 315 (435)
Q Consensus 236 y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v 315 (435)
-++|..||+++|.| .- + .+.+.+.+|.|+..-|++.++..|++++|.++- |+
T Consensus 420 rEKAKkf~ek~L~~---~P--------~---------Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--------D~ 471 (564)
T KOG1174|consen 420 REKAKKFAEKSLKI---NP--------I---------YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--------DV 471 (564)
T ss_pred HHHHHHHHHhhhcc---CC--------c---------cHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--------cc
Confidence 37888888888877 11 1 345677888888888888888888888888753 22
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 316 GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 316 a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
...+.||.++..+..+.+| ...|..||.|
T Consensus 472 -~LH~~Lgd~~~A~Ne~Q~a------m~~y~~ALr~ 500 (564)
T KOG1174|consen 472 -NLHNHLGDIMRAQNEPQKA------MEYYYKALRQ 500 (564)
T ss_pred -HHHHHHHHHHHHhhhHHHH------HHHHHHHHhc
Confidence 3457788888888887666 5667666655
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.001 Score=72.91 Aligned_cols=240 Identities=16% Similarity=0.170 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------HHHhhhhhHHHHHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHHhcCCC
Q 013867 110 SLLAMSTLLYESGNYVEAIEKLQK------VENFKNSILGVRVAAMEALAGLYL-QLGQDDTSSVVADKCLQLCEKHKPE 182 (435)
Q Consensus 110 ~l~nLa~ly~~qGky~eA~~l~~r------al~i~e~~L~i~vaale~L~g~~~-~~g~~~~A~~~~~~~~~l~~~~~~~ 182 (435)
.|..-|.+|.+.-++++|.++|++ +..+..-.+...|..+|.--|.++ ++|+++.|....-....+. +.
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~-ka--- 738 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLI-KA--- 738 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH-HH---
Confidence 355667778888888999998875 444443334445666776666654 4567666543322211111 00
Q ss_pred chhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHH------HHHHHHHhccc
Q 013867 183 NYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQK------VIEVLAEQKDF 256 (435)
Q Consensus 183 ~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~r------AL~I~~~~~~~ 256 (435)
-+.+--...+.+||.++ .-++.+... ..-++.+ +.-|.+.|+|+.|+.||.+ |+.++-+.-.-
T Consensus 739 -ieaai~akew~kai~il-dniqdqk~~-----s~yy~~i----adhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 -IEAAIGAKEWKKAISIL-DNIQDQKTA-----SGYYGEI----ADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKW 807 (1636)
T ss_pred -HHHHhhhhhhhhhHhHH-HHhhhhccc-----cccchHH----HHHhccchhHHHHHHHHHhcchhHHHHHHHhccccH
Confidence 00111123455666653 222222100 0112222 2335567777777776654 33332211000
Q ss_pred CCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHh---------hCCCChh-HHHHHH
Q 013867 257 SDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL------TRTLTKTEEL---------FGSHHPK-VGVVLT 320 (435)
Q Consensus 257 ~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~------~rAL~I~e~~---------lG~~HP~-va~~L~ 320 (435)
.+-..++..-|-|+. +...+..-++=+..+|+|.|||.+| .+|+++|.+. .|..||+ .-.+.-
T Consensus 808 ~da~kla~e~~~~e~-t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~ 886 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEA-TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHK 886 (1636)
T ss_pred HHHHHHHHHhcCchh-HHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHH
Confidence 000112211223443 2233445677788999999999999 4788888764 6788888 456788
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 321 CLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 321 nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
.+|.-|...|+...| |..|-.|-+..- .+ .+|.+.+-+++|..+.
T Consensus 887 ~f~~e~e~~g~lkaa------e~~flea~d~ka-----------av----nmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 887 HFAKELEAEGDLKAA------EEHFLEAGDFKA-----------AV----NMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHHHHHhccChhHH------HHHHHhhhhHHH-----------HH----HHhhhhhhHHHHHHHH
Confidence 899999999996554 777766654431 22 2566667777777665
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0034 Score=63.88 Aligned_cols=174 Identities=10% Similarity=0.027 Sum_probs=114.7
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESG-NYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qG-ky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~ 156 (435)
..+++.+|+.++.+++.+. |.-.++.+..+.++...| ++.+|+..+.+++....+.-.+ +
T Consensus 49 ~~e~serAL~lt~~aI~ln--------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa----W------- 109 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN--------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI----W------- 109 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC--------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH----h-------
Confidence 4678999999999999664 667789999999999999 6899999999986544332111 1
Q ss_pred HhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhch
Q 013867 157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNF 236 (435)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y 236 (435)
..+ ..++.+-+...+. +++....++|.. +|....+-...+.++...|+|
T Consensus 110 ------------~~R-~~~l~~l~~~~~~--~el~~~~kal~~----------------dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 110 ------------HHR-RWLAEKLGPDAAN--KELEFTRKILSL----------------DAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred ------------HHH-HHHHHHcCchhhH--HHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHhhhH
Confidence 111 1111211110011 223333344432 133445666677888899999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc---CCHH----HHHHHHHHHHHHHHHhhC
Q 013867 237 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM---GNFG----DAEEILTRTLTKTEELFG 309 (435)
Q Consensus 237 ~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q---G~y~----eAe~l~~rAL~I~e~~lG 309 (435)
++|..+|.++|++ .- . . -.+.+..+.++.+. |+++ ++..+..+++.+
T Consensus 159 ~eeL~~~~~~I~~---d~----~-N------------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~------ 212 (320)
T PLN02789 159 EDELEYCHQLLEE---DV----R-N------------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA------ 212 (320)
T ss_pred HHHHHHHHHHHHH---CC----C-c------------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh------
Confidence 9999999999998 11 1 1 13567788877776 4443 566666677766
Q ss_pred CCChhHHHHHHHHHHHHHHh
Q 013867 310 SHHPKVGVVLTCLALMFRNK 329 (435)
Q Consensus 310 ~~HP~va~~L~nLA~ly~~q 329 (435)
.|+-..+.++++.+|...
T Consensus 213 --~P~N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 213 --NPRNESPWRYLRGLFKDD 230 (320)
T ss_pred --CCCCcCHHHHHHHHHhcC
Confidence 577788899999999884
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=4e-05 Score=52.56 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
++++||.+|..+|+|++|+++|+++|.+.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 478999999999999999999999999887543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0085 Score=63.86 Aligned_cols=220 Identities=13% Similarity=0.109 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~ 140 (435)
-|....++|-..-. .-.+..|++.|.+++.+. ...+-++|.+.+|...|+|++.+.....+.+-...
T Consensus 223 ~a~~ek~lgnaayk----kk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre 289 (539)
T KOG0548|consen 223 KAHKEKELGNAAYK----KKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE 289 (539)
T ss_pred hhhHHHHHHHHHHH----hhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH
Confidence 35555666666532 337899999999999665 24556889999999999999999888876543211
Q ss_pred h-HHHH-HH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 141 I-LGVR-VA-AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 141 ~-L~i~-va-ale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
. .... ++ ++-.++..|..++.++.+..++++.+.-... .+.-.-+....++++...... ...|
T Consensus 290 ~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a---------~~~p 355 (539)
T KOG0548|consen 290 LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKA---------YINP 355 (539)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHH---------hhCh
Confidence 1 0111 11 1112233344444445444444443322221 001111112222222211000 1112
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
....-.-.-|.-+.+.|+|.+|...|-+|+.- . |+ ....++|.|-.|.+.|.|.+|..-.
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr-----~-------------P~--Da~lYsNRAac~~kL~~~~~aL~Da 415 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR-----D-------------PE--DARLYSNRAACYLKLGEYPEALKDA 415 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-----C-------------Cc--hhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 22222222356678899999999999996644 1 11 1245789999999999999999998
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
+.+++. ||.....+.-=|.++..+-+|++|
T Consensus 416 ~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkA 445 (539)
T KOG0548|consen 416 KKCIEL--------DPNFIKAYLRKGAALRAMKEYDKA 445 (539)
T ss_pred HHHHhc--------CchHHHHHHHHHHHHHHHHHHHHH
Confidence 888877 999999999889999999998876
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0017 Score=65.61 Aligned_cols=192 Identities=17% Similarity=0.183 Sum_probs=116.0
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
+.|.-|+|+.+.+--+.-- . +. -.-....+..||.-|...|=||.||.+|.+-.+.-+-. ..++..|..+|-
T Consensus 81 sRGEvDRAIRiHQ~L~~sp-d-lT--~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa----~~AlqqLl~IYQ 152 (389)
T COG2956 81 SRGEVDRAIRIHQTLLESP-D-LT--FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFA----EGALQQLLNIYQ 152 (389)
T ss_pred hcchHHHHHHHHHHHhcCC-C-Cc--hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhh----HHHHHHHHHHHH
Confidence 6899999999987655321 1 11 12356778899999999999999999998875532211 224445556664
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcc-------cccccccchhHHHHHHHHHH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES-------GLQEEEGCTGSAALSYGEYL 230 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~-------a~~~~~~~~~~~a~~la~~~ 230 (435)
.......|...+.++..+ ++.+|.---+.+....|...+ ...+++. |.+.+..| ..+...+|.++
T Consensus 153 ~treW~KAId~A~~L~k~----~~q~~~~eIAqfyCELAq~~~---~~~~~d~A~~~l~kAlqa~~~c-vRAsi~lG~v~ 224 (389)
T COG2956 153 ATREWEKAIDVAERLVKL----GGQTYRVEIAQFYCELAQQAL---ASSDVDRARELLKKALQADKKC-VRASIILGRVE 224 (389)
T ss_pred HhhHHHHHHHHHHHHHHc----CCccchhHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHhhCccc-eehhhhhhHHH
Confidence 444444444333322222 211121112222333222210 0111111 11112233 34555688999
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 231 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 231 ~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
..+|+|++|..-++++++- ++..++ -.+.-|-..|..+|+-++.+.++.++.+.+
T Consensus 225 ~~~g~y~~AV~~~e~v~eQ--------n~~yl~-----------evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 225 LAKGDYQKAVEALERVLEQ--------NPEYLS-----------EVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HhccchHHHHHHHHHHHHh--------ChHHHH-----------HHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9999999999999998876 121222 245678999999999999999999998764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.014 Score=60.22 Aligned_cols=243 Identities=17% Similarity=0.091 Sum_probs=151.3
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
-+|++++|-.++.++-+.- + .++......++.++..+|+|..|..-..+.+.+..+.-.+ +.=..-.|.
T Consensus 130 qrgd~~~an~yL~eaae~~-----~--~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~v----lrLa~r~y~ 198 (400)
T COG3071 130 QRGDEDRANRYLAEAAELA-----G--DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEV----LRLALRAYI 198 (400)
T ss_pred hcccHHHHHHHHHHHhccC-----C--CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHH----HHHHHHHHH
Confidence 3577777777777665322 1 2466777788999999999999999998888776654321 111123466
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccc--------cccccchhHHHHHHHHH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGL--------QEEEGCTGSAALSYGEY 229 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~--------~~~~~~~~~~a~~la~~ 229 (435)
..|.+... ...+.-+.+.+- +++.+.......|..++......+-.+.. +..--..+.+..+++.-
T Consensus 199 ~~g~~~~l----l~~l~~L~ka~~--l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~ 272 (400)
T COG3071 199 RLGAWQAL----LAILPKLRKAGL--LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAER 272 (400)
T ss_pred HhccHHHH----HHHHHHHHHccC--CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHH
Confidence 66755332 233444455553 22334444556666665544433222211 00012235677788888
Q ss_pred HHHhhchHHHHHHHHHHHHHHHH--------hcccCCCCCcc-----cccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAE--------QKDFSDMNTLG-----SCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~--------~~~~~~~~~l~-----~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
+-..|++++|..+-+.+|.-... ....+++..+= ....+|+.+ .-+.-||.+|.+.+.|.+|...
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEA 350 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHH
Confidence 89999999999999988853100 00000110000 001123333 2345799999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
|+.|+... .-+..++-+|.+|.++|+-++| +..++.+|-....
T Consensus 351 leaAl~~~---------~s~~~~~~la~~~~~~g~~~~A------~~~r~e~L~~~~~ 393 (400)
T COG3071 351 LEAALKLR---------PSASDYAELADALDQLGEPEEA------EQVRREALLLTRQ 393 (400)
T ss_pred HHHHHhcC---------CChhhHHHHHHHHHHcCChHHH------HHHHHHHHHHhcC
Confidence 99988753 2467899999999999997766 8999999966554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0071 Score=62.98 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHH
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTD 370 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla 370 (435)
++|..+|+++|.| .|.....-+-+|.+...-|+++++ ..|.+++|.++ ||+. -=+-++
T Consensus 421 EKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~------i~LLe~~L~~~-------~D~~-LH~~Lg 478 (564)
T KOG1174|consen 421 EKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPTKDI------IKLLEKHLIIF-------PDVN-LHNHLG 478 (564)
T ss_pred HHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCccchH------HHHHHHHHhhc-------cccH-HHHHHH
Confidence 3455555555543 588888899999999999998877 89999999998 3321 112366
Q ss_pred HHHHHhcCHHHHhhHh
Q 013867 371 IVALARGGYAEALSVQ 386 (435)
Q Consensus 371 ~~~~a~G~yaeal~~~ 386 (435)
.+..++..|.+++..+
T Consensus 479 d~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYY 494 (564)
T ss_pred HHHHHhhhHHHHHHHH
Confidence 6777777787777655
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00014 Score=74.91 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=85.2
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
-|.+|...|+|..|...|+||+..++....+..+. . .....+.+.+.+||+..|.++.+|.+|...-.++|.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee--~---~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-- 286 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEE--Q---KKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-- 286 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHH--H---HHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--
Confidence 36688999999999999999999986443321110 0 0122345667789999999999999999999999975
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+ |.-.-.|.--|.+|..+|+|+.| ...|++|+++.
T Consensus 287 ---~---~~N~KALyRrG~A~l~~~e~~~A------~~df~ka~k~~ 321 (397)
T KOG0543|consen 287 ---D---PNNVKALYRRGQALLALGEYDLA------RDDFQKALKLE 321 (397)
T ss_pred ---C---CCchhHHHHHHHHHHhhccHHHH------HHHHHHHHHhC
Confidence 3 34456899999999999998877 89999999987
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00031 Score=66.13 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=85.3
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
+|+.+-..|+|.||+++|++++... ++. ..+.|.+|++.....+++.+|.+.++..
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~-----------fA~--------d~a~lLglA~Aqfa~~~~A~a~~tLe~l----- 150 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGI-----------FAH--------DAAMLLGLAQAQFAIQEFAAAQQTLEDL----- 150 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccc-----------cCC--------CHHHHHHHHHHHHhhccHHHHHHHHHHH-----
Confidence 5677788999999999999999872 221 1246789999999999999999988754
Q ss_pred HhhCCCChh--HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHh
Q 013867 306 ELFGSHHPK--VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEAL 383 (435)
Q Consensus 306 ~~lG~~HP~--va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal 383 (435)
|+-||. +....--+|.+|..+|++++| |.-|+.++.-+ |+.. ..-.-+..+.+|||.+|+-
T Consensus 151 ---~e~~pa~r~pd~~Ll~aR~laa~g~~a~A------esafe~a~~~y-------pg~~-ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 151 ---MEYNPAFRSPDGHLLFARTLAAQGKYADA------ESAFEVAISYY-------PGPQ-ARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred ---hhcCCccCCCCchHHHHHHHHhcCCchhH------HHHHHHHHHhC-------CCHH-HHHHHHHHHHHhcchhHHH
Confidence 455565 344556689999999998776 88999998877 2311 1112344456777666653
Q ss_pred h
Q 013867 384 S 384 (435)
Q Consensus 384 ~ 384 (435)
.
T Consensus 214 a 214 (251)
T COG4700 214 A 214 (251)
T ss_pred H
Confidence 3
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.014 Score=64.93 Aligned_cols=264 Identities=15% Similarity=0.139 Sum_probs=139.0
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI---LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 105 p~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~---L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
-..-.+|++-|.-+...|+...|++.|+++..-+-.. |.....++ ..|.+.-.+. .++.-....++..+.
T Consensus 855 iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~----e~Yv~~~~d~---~L~~WWgqYlES~Ge 927 (1416)
T KOG3617|consen 855 IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI----EQYVRRKRDE---SLYSWWGQYLESVGE 927 (1416)
T ss_pred eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH----HHHHHhccch---HHHHHHHHHHhcccc
Confidence 3466788889998999999999999998864321111 11111111 1222222221 223333444554442
Q ss_pred CchhchhhHHHHHHHHH--HHHHH--hcCCCcccccccccchhHHH--HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcc
Q 013867 182 ENYKTYGAVNSRANAVK--GLVEL--AHGNLESGLQEEEGCTGSAA--LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD 255 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~--~~~~~--lgg~h~~a~~~~~~~~~~~a--~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~ 255 (435)
. + -++..+.+|-. -++.+ .+|+..+|....+ ..++.+ .-+|.-|.++|++.+|..+|-||-+.--...-
T Consensus 928 m--d--aAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~-esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRl 1002 (1416)
T KOG3617|consen 928 M--D--AALSFYSSAKDYFSMVRIKCIQGKTDKAARIAE-ESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRL 1002 (1416)
T ss_pred h--H--HHHHHHHHhhhhhhheeeEeeccCchHHHHHHH-hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 12222222221 11111 2344444332221 112222 33577889999999999999998654211000
Q ss_pred cCCCCCcccccccchHHHHHHH------HHHHHHHHHcC-CHHHHHHHHHHH------------------HHHHHHhhCC
Q 013867 256 FSDMNTLGSCNMALEEVALAAT------FALGQLEAHMG-NFGDAEEILTRT------------------LTKTEELFGS 310 (435)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~l~~l------~nLa~ly~~qG-~y~eAe~l~~rA------------------L~I~e~~lG~ 310 (435)
-..+.+- ..-.+++.+ ..-|.-|...| .++.|-.||.+| |+|--+-|.+
T Consensus 1003 -cKEnd~~-----d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~ 1076 (1416)
T KOG3617|consen 1003 -CKENDMK-----DRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDA 1076 (1416)
T ss_pred -HHhcCHH-----HHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCC
Confidence 0000110 000011111 11133344444 555666666544 3333333332
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCC---------------CCCc---hhhhhccHHHH
Q 013867 311 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPL---------------ESEG---VETKVDRTDIV 372 (435)
Q Consensus 311 ~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~---------------~hp~---~a~~l~nla~~ 372 (435)
.. =...|+.-|..+...-+|++|..+.-+-.-|++||.|.+--+. +.|. -...|-.++.+
T Consensus 1077 ~s--Dp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~ 1154 (1416)
T KOG3617|consen 1077 GS--DPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAEL 1154 (1416)
T ss_pred CC--CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHH
Confidence 21 2345778899999999999998888888889999999842111 1111 12345577889
Q ss_pred HHHhcCHHHHhhHhhh
Q 013867 373 ALARGGYAEALSVQQN 388 (435)
Q Consensus 373 ~~a~G~yaeal~~~~~ 388 (435)
++.||.|.-|...+-+
T Consensus 1155 c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1155 CLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHhccchHHHHHHHhh
Confidence 9999999999888755
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00027 Score=70.85 Aligned_cols=94 Identities=20% Similarity=0.245 Sum_probs=64.2
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH 312 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~H 312 (435)
..+|.+|.-+|+..- . ..+. +...++.+|.++..+|+|+||+.++++||+. .+++
T Consensus 180 ~e~~~~A~y~f~El~------~------~~~~--------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-----~~~~ 234 (290)
T PF04733_consen 180 GEKYQDAFYIFEELS------D------KFGS--------TPKLLNGLAVCHLQLGHYEEAEELLEEALEK-----DPND 234 (290)
T ss_dssp TTCCCHHHHHHHHHH------C------CS----------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC------CCH
T ss_pred chhHHHHHHHHHHHH------h------ccCC--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----ccCC
Confidence 347888888888731 1 1121 2245789999999999999999999999852 3455
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchh
Q 013867 313 PKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 363 (435)
Q Consensus 313 P~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a 363 (435)
| .++.|++.+...+|+..++ -+|-+.-++...|+||-+.
T Consensus 235 ~---d~LaNliv~~~~~gk~~~~---------~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 235 P---DTLANLIVCSLHLGKPTEA---------AERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp H---HHHHHHHHHHHHTT-TCHH---------HHHHHHHCHHHTTTSHHHH
T ss_pred H---HHHHHHHHHHHHhCCChhH---------HHHHHHHHHHhCCCChHHH
Confidence 5 5788999999999997433 3344555555578888644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0043 Score=66.75 Aligned_cols=101 Identities=15% Similarity=0.196 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHH-HHHHHHHHHcCCHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT-FALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l-~nLa~ly~~qG~y~eAe~l~ 297 (435)
....+.|.|..+-..|+|.+|+++.++|+.|..+.+..++...-+ ++ -.++.. .-|+-+|..||+-.||..+|
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEe-----ie-~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEE-----IE-EELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhh-----HH-HHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 456778888889999999999999999999987766532222101 11 123332 36899999999999988888
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHh
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNK 329 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~q 329 (435)
...+.- .-+|-|..|+.-|||=.+-..+
T Consensus 248 ~~~i~~----~~~D~~~~Av~~NNLva~~~d~ 275 (652)
T KOG2376|consen 248 VDIIKR----NPADEPSLAVAVNNLVALSKDQ 275 (652)
T ss_pred HHHHHh----cCCCchHHHHHhcchhhhcccc
Confidence 776643 4456667899999987664444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00024 Score=57.18 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=57.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhh
Q 013867 286 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETK 365 (435)
Q Consensus 286 ~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~ 365 (435)
.||+|++|+.+|+++++.... .| -...+.+||.+|..+|+|++| ..++++ +.+. +.+++.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A------~~~~~~-~~~~----~~~~~~--- 60 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEA------IELLQK-LKLD----PSNPDI--- 60 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHH------HHHHHC-HTHH----HCHHHH---
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHH------HHHHHH-hCCC----CCCHHH---
Confidence 479999999999999998654 23 455677799999999997665 666666 3222 222332
Q ss_pred hccHHHHHHHhcCHHHHhhHhh
Q 013867 366 VDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 366 l~nla~~~~a~G~yaeal~~~~ 387 (435)
.--+|.++...|+|+||+...+
T Consensus 61 ~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 61 HYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHh
Confidence 2245888999999999988764
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00014 Score=55.56 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=43.0
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 231 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 231 ~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
..+|+|++|+.+|++++... |+ .......||.+|..+|+|++|+.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~------------------p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN------------------PD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT------------------TT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC------------------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46899999999999999881 11 1245678999999999999999999998864
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0093 Score=56.29 Aligned_cols=162 Identities=17% Similarity=0.141 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
......|..+..+|+|++|+..|++.+..+ +.+ ..+ -.+...+|..|..+|+|++|...|++-
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~------P~s-~~a----------~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRY------PNS-PYA----------PQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-------TTS-TTH----------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC------CCC-hHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345556777789999999999999998773 112 122 246789999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhh-----hhhhhHHHHHHHHHHHHHhcCCCCCCCchh------------
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQE-----HSSALLIQEGLYRRALEFLKAPPLESEGVE------------ 363 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e-----~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a------------ 363 (435)
+.-+ |+||.+..++..+|..+..+.+-. +.....+|...|++-+.-+ |+++-+.
T Consensus 69 i~~y-----P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y----P~S~y~~~A~~~l~~l~~~ 139 (203)
T PF13525_consen 69 IKLY-----PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY----PNSEYAEEAKKRLAELRNR 139 (203)
T ss_dssp HHH------TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----TTSTTHHHHHHHHHHHHHH
T ss_pred HHHC-----CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC----cCchHHHHHHHHHHHHHHH
Confidence 8654 899999999999999987765321 1112334455555555443 5555322
Q ss_pred --hhhccHHHHHHHhcCHHHHhhHhhh-------hhhHHHHHHHHHHHHhcccc
Q 013867 364 --TKVDRTDIVALARGGYAEALSVQQN-------RKDEGERMKRWAEAAWRNRR 408 (435)
Q Consensus 364 --~~l~nla~~~~a~G~yaeal~~~~~-------r~~eae~~~~~a~~~~~~~r 408 (435)
.---.++-.|..+|.|..|...... -...-+.|....+++.+-+-
T Consensus 140 la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 140 LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC
Confidence 1111345567777877777654422 22223566666666665444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0042 Score=66.10 Aligned_cols=214 Identities=17% Similarity=0.220 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhc
Q 013867 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT 186 (435)
Q Consensus 107 ~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~e 186 (435)
.|.-.-+||+..+++-+++.|++.|.+++.+. +..+- ..+.+-.|.++|.+.. |.....+......
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~----~~n~aA~~~e~~~~~~-------c~~~c~~a~E~gr-- 288 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITY----LNNIAAVYLERGKYAE-------CIELCEKAVEVGR-- 288 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHH----HHHHHHHHHhccHHHH-------hhcchHHHHHHhH--
Confidence 45667889999999999999999999998876 33322 3344455666664422 2222211000000
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH------------hc
Q 013867 187 YGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAE------------QK 254 (435)
Q Consensus 187 aeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~------------~~ 254 (435)
+ .|+. ..+ +......+|..|..+|+|+.|+.+|+|+|.-... .+
T Consensus 289 -e---~rad--~kl------------------Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~ 344 (539)
T KOG0548|consen 289 -E---LRAD--YKL------------------IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKAL 344 (539)
T ss_pred -H---HHHH--HHH------------------HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Confidence 0 0000 000 0111112455778889999999999998876321 11
Q ss_pred ccC-CCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhh
Q 013867 255 DFS-DMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQE 333 (435)
Q Consensus 255 ~~~-~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e 333 (435)
+.. ..... .|+- ....-+=|+-+.+.|+|.+|...|++|+..- |+-+..+.|.|..|-.-|.+.
T Consensus 345 k~~e~~a~~-----~pe~--A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--------P~Da~lYsNRAac~~kL~~~~ 409 (539)
T KOG0548|consen 345 KEAERKAYI-----NPEK--AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--------PEDARLYSNRAACYLKLGEYP 409 (539)
T ss_pred HHHHHHHhh-----ChhH--HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHHhhHH
Confidence 100 01111 1221 1222345889999999999999999977643 999999999999999999876
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 334 HSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 334 ~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
.| ..=.+.+++. +|...+....-+.++...-+|+.|+..+
T Consensus 410 ~a------L~Da~~~ieL-------~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 410 EA------LKDAKKCIEL-------DPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred HH------HHHHHHHHhc-------CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 4445555555 6776656666677777888899988865
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00049 Score=68.64 Aligned_cols=80 Identities=16% Similarity=0.105 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccc
Q 013867 188 GAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 267 (435)
Q Consensus 188 eal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~ 267 (435)
+++..|..||.. .|..+....+-|.+|.+.|.|+.|+.=.+.||.| ++ +
T Consensus 99 eAv~kY~~AI~l----------------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--------Dp-~------ 147 (304)
T KOG0553|consen 99 EAVDKYTEAIEL----------------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--------DP-H------ 147 (304)
T ss_pred HHHHHHHHHHhc----------------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--------Ch-H------
Confidence 667778888863 1444456677899999999999999999999999 11 1
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 268 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 268 ~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
+..++..||.+|..+|+|.+|++.|++||+|
T Consensus 148 -----yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 148 -----YSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred -----HHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 3468899999999999999999999999986
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00061 Score=67.43 Aligned_cols=97 Identities=12% Similarity=0.077 Sum_probs=81.3
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 276 ATFALGQL-EAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 276 ~l~nLa~l-y~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
...+.|.- +..+|+|++|...|++.+..+ |+++.+..++..||.+|..+|+|++| ...|++++.-+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A------~~~f~~vv~~y-- 210 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDA------AYYFASVVKNY-- 210 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC--
Confidence 44555554 467899999999999999876 77888899999999999999998876 77788887766
Q ss_pred CCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 355 PPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
|+||.....+..++.++..+|++++|...++
T Consensus 211 --P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~ 241 (263)
T PRK10803 211 --PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQ 241 (263)
T ss_pred --CCCcchhHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6777777788889999999999999988774
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0083 Score=58.58 Aligned_cols=188 Identities=12% Similarity=0.110 Sum_probs=109.0
Q ss_pred HHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH
Q 013867 64 QMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG 143 (435)
Q Consensus 64 ~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~ 143 (435)
..-.-|.... ..|+|++|+..|++.+... |..|........||.+|+.+|+|++|+..|++.+...+.+-.
T Consensus 34 ~~Y~~A~~~~----~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 34 EIYATAQQKL----QDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred HHHHHHHHHH----HCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 3334455542 3589999999999999765 445778888999999999999999999999999877665533
Q ss_pred HHHHHHHHHHHHHHhcC-----------CCcchHHHHH---HHHHHHHhcCCCc-hhchhhHHHHHHHHHHHHHHhcCCC
Q 013867 144 VRVAAMEALAGLYLQLG-----------QDDTSSVVAD---KCLQLCEKHKPEN-YKTYGAVNSRANAVKGLVELAHGNL 208 (435)
Q Consensus 144 i~vaale~L~g~~~~~g-----------~~~~A~~~~~---~~~~l~~~~~~~~-~~eaeal~~~a~Ai~~~~~~lgg~h 208 (435)
+.-+ +-.++-.+..++ +...-..... ..+..+....|.. | +.....+-..++.
T Consensus 105 ~~~a-~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y--a~~A~~rl~~l~~--------- 172 (243)
T PRK10866 105 IDYV-LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY--TTDATKRLVFLKD--------- 172 (243)
T ss_pred hHHH-HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh--HHHHHHHHHHHHH---------
Confidence 2211 100111111111 1000000111 1111122222111 1 0111111111111
Q ss_pred cccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC
Q 013867 209 ESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG 288 (435)
Q Consensus 209 ~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG 288 (435)
.+..--...|.+|...|+|.-|..=++.+++=+ ++.+. .-.++.-|...|...|
T Consensus 173 ---------~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y------p~t~~-----------~~eal~~l~~ay~~lg 226 (243)
T PRK10866 173 ---------RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY------PDTQA-----------TRDALPLMENAYRQLQ 226 (243)
T ss_pred ---------HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC------CCCch-----------HHHHHHHHHHHHHHcC
Confidence 111223456889999999999999888888652 11111 2247889999999999
Q ss_pred CHHHHHHHHH
Q 013867 289 NFGDAEEILT 298 (435)
Q Consensus 289 ~y~eAe~l~~ 298 (435)
.-++|.....
T Consensus 227 ~~~~a~~~~~ 236 (243)
T PRK10866 227 LNAQADKVAK 236 (243)
T ss_pred ChHHHHHHHH
Confidence 9999987553
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0022 Score=72.94 Aligned_cols=158 Identities=10% Similarity=0.045 Sum_probs=105.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHh
Q 013867 99 DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEK 178 (435)
Q Consensus 99 ~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~ 178 (435)
.++.=.|+-...+..|..+|..+|++++|+.+++.+++. .|.....-+.... ++..
T Consensus 22 ~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~----------------------~P~~i~~yy~~G~--l~~q 77 (906)
T PRK14720 22 DANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE----------------------HKKSISALYISGI--LSLS 77 (906)
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------------CCcceehHHHHHH--HHHh
Confidence 355557888999999999999999999999998876443 2332221111111 2211
Q ss_pred cCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCC
Q 013867 179 HKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSD 258 (435)
Q Consensus 179 ~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~ 258 (435)
.++ +.++-.+ .+........++.-.+.+|.+.+++..
T Consensus 78 ~~~--~~~~~lv----------------------------------~~l~~~~~~~~~~~ve~~~~~i~~~~~------- 114 (906)
T PRK14720 78 RRP--LNDSNLL----------------------------------NLIDSFSQNLKWAIVEHICDKILLYGE------- 114 (906)
T ss_pred hcc--hhhhhhh----------------------------------hhhhhcccccchhHHHHHHHHHHhhhh-------
Confidence 111 1111100 111122233456555566666555521
Q ss_pred CCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhh
Q 013867 259 MNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL 338 (435)
Q Consensus 259 ~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~ 338 (435)
+ --++..||..|.++|++++|...|+++|.+. |+=+.+|||+|..|..+ +.++|
T Consensus 115 ~--------------k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~-dL~KA--- 168 (906)
T PRK14720 115 N--------------KLALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE-DKEKA--- 168 (906)
T ss_pred h--------------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-hHHHH---
Confidence 1 1257899999999999999999999999986 77788999999999999 87766
Q ss_pred HHHHHHHHHHHHHh
Q 013867 339 LIQEGLYRRALEFL 352 (435)
Q Consensus 339 ~~Ae~Ly~rAL~I~ 352 (435)
+.+|.+|++.+
T Consensus 169 ---~~m~~KAV~~~ 179 (906)
T PRK14720 169 ---ITYLKKAIYRF 179 (906)
T ss_pred ---HHHHHHHHHHH
Confidence 88888888775
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0095 Score=58.17 Aligned_cols=86 Identities=12% Similarity=-0.001 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
...-|.-+...|+|++|+..|++.+... . +. . ....+..+||.+|..+|+|++|...|++.+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y---P---~s-~----------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRY---P---FG-P----------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---C---CC-h----------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344556677899999999999999872 1 11 1 1234678999999999999999999999998
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhh
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKA 330 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG 330 (435)
.+ |+||++..++.-+|..+...+
T Consensus 98 ~~-----P~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 98 LN-----PTHPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred hC-----cCCCchHHHHHHHHHhhhhcc
Confidence 75 899999999999998875554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00045 Score=53.57 Aligned_cols=67 Identities=13% Similarity=0.188 Sum_probs=53.4
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 306 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~ 306 (435)
..+|..+++|++|...+++++.+. |+ ....+..+|.+|..+|+|++|...|++++++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~------------------p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--- 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD------------------PD--DPELWLQRARCLFQLGRYEEALEDLERALEL--- 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC------------------cc--cchhhHHHHHHHHHhccHHHHHHHHHHHHHH---
Confidence 456889999999999999999981 11 1134678999999999999999999999954
Q ss_pred hhCCCChhHHHH
Q 013867 307 LFGSHHPKVGVV 318 (435)
Q Consensus 307 ~lG~~HP~va~~ 318 (435)
+|++|+....
T Consensus 59 --~p~~~~~~~~ 68 (73)
T PF13371_consen 59 --SPDDPDARAL 68 (73)
T ss_pred --CCCcHHHHHH
Confidence 5677765443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0097 Score=59.82 Aligned_cols=201 Identities=14% Similarity=0.199 Sum_probs=113.7
Q ss_pred CCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 56 ~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
.+|..|...+|+ +-+|.+|++++.-- ++..|.+-..++-||..|+.--+|.+|-++|+|--
T Consensus 11 Geftaviy~lI~-----------d~ry~DaI~~l~s~--------~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ 71 (459)
T KOG4340|consen 11 GEFTAVVYRLIR-----------DARYADAIQLLGSE--------LERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLG 71 (459)
T ss_pred CchHHHHHHHHH-----------HhhHHHHHHHHHHH--------HhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666665 24799999988753 35567777788899999999999999999999864
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc
Q 013867 136 NFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE 215 (435)
Q Consensus 136 ~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~ 215 (435)
....+--.-+.= -.-.+| +.+.+..|.. .+.+ .++ .+.+..++.-+..-+.-..++.+.+..+-
T Consensus 72 ql~P~~~qYrlY---~AQSLY-~A~i~ADALr----V~~~--~~D------~~~L~~~~lqLqaAIkYse~Dl~g~rsLv 135 (459)
T KOG4340|consen 72 QLHPELEQYRLY---QAQSLY-KACIYADALR----VAFL--LLD------NPALHSRVLQLQAAIKYSEGDLPGSRSLV 135 (459)
T ss_pred hhChHHHHHHHH---HHHHHH-HhcccHHHHH----HHHH--hcC------CHHHHHHHHHHHHHHhcccccCcchHHHH
Confidence 433221111000 000001 1111111111 0111 111 01121222111111111122222211100
Q ss_pred ----ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHH
Q 013867 216 ----EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFG 291 (435)
Q Consensus 216 ----~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~ 291 (435)
..+...+.++.|.+...-|+|++|.+-|+.|++. -|+ .|-+ -.|+|..+...|+|+
T Consensus 136 eQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv----sGy--qpll--------------AYniALaHy~~~qya 195 (459)
T KOG4340|consen 136 EQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV----SGY--QPLL--------------AYNLALAHYSSRQYA 195 (459)
T ss_pred HhccCCCccchhccchheeeccccHHHHHHHHHHHHhh----cCC--Cchh--------------HHHHHHHHHhhhhHH
Confidence 0123456677888889999999999999999988 221 1111 268999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhH
Q 013867 292 DAEEILTRTLTKTEELFGSHHPKV 315 (435)
Q Consensus 292 eAe~l~~rAL~I~e~~lG~~HP~v 315 (435)
.|..+....++-.- .+||..
T Consensus 196 sALk~iSEIieRG~----r~HPEl 215 (459)
T KOG4340|consen 196 SALKHISEIIERGI----RQHPEL 215 (459)
T ss_pred HHHHHHHHHHHhhh----hcCCcc
Confidence 99999877666544 367764
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.015 Score=54.82 Aligned_cols=187 Identities=18% Similarity=0.201 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+..+=..|..+- ..|+|++|+..|++..... |.+|....+...+|..|+.+|+|++|+..|++-+...+.+
T Consensus 5 ~~~lY~~a~~~~----~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 5 AEALYQKALEAL----QQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HHHHHHHHHHHH----HCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 445555666652 3689999999999998665 6788999999999999999999999999999987665544
Q ss_pred HHHHHHHHHHHHHHHHhc-------CCCcchHHHHHHHHHHHHhcCCC-chhchhhHHHHHHHHHHHHHHhcCCCccccc
Q 013867 142 LGVRVAAMEALAGLYLQL-------GQDDTSSVVADKCLQLCEKHKPE-NYKTYGAVNSRANAVKGLVELAHGNLESGLQ 213 (435)
Q Consensus 142 L~i~vaale~L~g~~~~~-------g~~~~A~~~~~~~~~l~~~~~~~-~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~ 213 (435)
--+.-+ +-.++-.+..+ ..+.....-+-.....+....|. .|. .....+...++.
T Consensus 76 ~~~~~A-~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~--~~A~~~l~~l~~-------------- 138 (203)
T PF13525_consen 76 PKADYA-LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA--EEAKKRLAELRN-------------- 138 (203)
T ss_dssp TTHHHH-HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH--HHHHHHHHHHHH--------------
T ss_pred cchhhH-HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH--HHHHHHHHHHHH--------------
Confidence 322111 10011111111 11110000011111111122211 110 111111111111
Q ss_pred ccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH
Q 013867 214 EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 214 ~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA 293 (435)
.+..--...|.+|..+|+|.-|..-|+.+++-+ . +.+. .-.++.-|+..|...|..+.|
T Consensus 139 ----~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y---p---~t~~-----------~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 139 ----RLAEHELYIARFYYKRGKYKAAIIRFQYVIENY---P---DTPA-----------AEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp ----HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS---T---TSHH-----------HHHHHHHHHHHHHHTT-HHHH
T ss_pred ----HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---C---CCch-----------HHHHHHHHHHHHHHhCChHHH
Confidence 111222346889999999999999999988772 1 1100 123788899999999999866
Q ss_pred HH
Q 013867 294 EE 295 (435)
Q Consensus 294 e~ 295 (435)
..
T Consensus 198 ~~ 199 (203)
T PF13525_consen 198 DT 199 (203)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0042 Score=58.70 Aligned_cols=129 Identities=19% Similarity=0.182 Sum_probs=84.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHhcCCCchhchh
Q 013867 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQD--DTSSVVADKCLQLCEKHKPENYKTYG 188 (435)
Q Consensus 111 l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~--~~A~~~~~~~~~l~~~~~~~~~~eae 188 (435)
...||+.+.+-|+|.||+++|++++. |++ +.+ . ++.+...+..
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qals-----------------------G~fA~d~a-~----lLglA~Aqfa------- 136 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALS-----------------------GIFAHDAA-M----LLGLAQAQFA------- 136 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhc-----------------------cccCCCHH-H----HHHHHHHHHh-------
Confidence 45899999999999999999999843 332 111 1 2222222221
Q ss_pred hHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccccccc
Q 013867 189 AVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA 268 (435)
Q Consensus 189 al~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~ 268 (435)
+...+.+. -.++.++.-+|... .++..+-+|.+|+.+|+|.+|+.-|+.++.- +.|
T Consensus 137 -~~~~A~a~-~tLe~l~e~~pa~r------~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~-----------ypg----- 192 (251)
T COG4700 137 -IQEFAAAQ-QTLEDLMEYNPAFR------SPDGHLLFARTLAAQGKYADAESAFEVAISY-----------YPG----- 192 (251)
T ss_pred -hccHHHHH-HHHHHHhhcCCccC------CCCchHHHHHHHHhcCCchhHHHHHHHHHHh-----------CCC-----
Confidence 11112222 23456766665422 2334566789999999999999999999987 333
Q ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 269 LEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 269 ~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
| ...+-.+..+.+||+.+||..-|.....-
T Consensus 193 ~-----~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 193 P-----QARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred H-----HHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 1 34567888999999999998877655443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00017 Score=49.41 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 110 ~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
++++||.+|.++|+|++|+++|++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999876554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00041 Score=53.76 Aligned_cols=59 Identities=24% Similarity=0.194 Sum_probs=53.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 280 LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 280 La~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|..+|..+++|++|...+++++.+ +|+-...+..+|.+|..+|++++| ...+++++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A------~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEA------LEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHH------HHHHHHHHHHC
Confidence 467899999999999999999998 788888999999999999998776 78899999765
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.029 Score=63.03 Aligned_cols=170 Identities=17% Similarity=0.108 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFAL-GQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nL-a~ly~~qG~y~eAe~l~~rA 300 (435)
...-++....++.+|+||+.+-.++..-+ +.+++...+ ...+..+.| |++...+|++++|+.+-+++
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l----~~~~~~~~~--------~l~ae~~aL~a~val~~~~~e~a~~lar~a 484 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFL----KAPMHSRQG--------DLLAEFQALRAQVALNRGDPEEAEDLARLA 484 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHh----CcCcccchh--------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44456777889999999999999988773 212222222 234555554 78889999999999999999
Q ss_pred HHHHHHhhCCCChhH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhc--
Q 013867 301 LTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG-- 377 (435)
Q Consensus 301 L~I~e~~lG~~HP~v-a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G-- 377 (435)
+.. ++++++.+ +..+.+++.+..-+|++++| ..+.+++.++.+....-|-.+- +..-.+.++.+||
T Consensus 485 l~~----L~~~~~~~r~~~~sv~~~a~~~~G~~~~A------l~~~~~a~~~a~~~~~~~l~~~-~~~~~s~il~~qGq~ 553 (894)
T COG2909 485 LVQ----LPEAAYRSRIVALSVLGEAAHIRGELTQA------LALMQQAEQMARQHDVYHLALW-SLLQQSEILEAQGQV 553 (894)
T ss_pred HHh----cccccchhhhhhhhhhhHHHHHhchHHHH------HHHHHHHHHHHHHcccHHHHHH-HHHHHHHHHHHhhHH
Confidence 864 67777775 56788999999999998877 7889999999876544444433 3334778889999
Q ss_pred CHHHHhhHhhhhhhH---H-----HHHHHHHHHHhcccchhHHHH
Q 013867 378 GYAEALSVQQNRKDE---G-----ERMKRWAEAAWRNRRVSLAEA 414 (435)
Q Consensus 378 ~yaeal~~~~~r~~e---a-----e~~~~~a~~~~~~~r~~l~~~ 414 (435)
.|++.+..+...... . =.+--.+..+|-..|+.++++
T Consensus 554 ~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ 598 (894)
T COG2909 554 ARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEA 598 (894)
T ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhH
Confidence 566666655222222 1 233457888887777665554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0003 Score=53.77 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=44.0
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
+|+|++|+.+|++++... |.-......||.+|..+|+|++|+..+++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN--------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT--------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ccCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 589999999999999654 6677778899999999999999999999875543
|
... |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.003 Score=66.04 Aligned_cols=119 Identities=19% Similarity=0.179 Sum_probs=96.6
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
..+-.++...++|++|+.++++-.+. + |+ + ..-|+.+|..+++-.+|..++.++|
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~--------~----------pe---v--~~~LA~v~l~~~~E~~AI~ll~~aL-- 227 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER--------D----------PE---V--AVLLARVYLLMNEEVEAIRLLNEAL-- 227 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc--------C----------Cc---H--HHHHHHHHHhcCcHHHHHHHHHHHH--
Confidence 33456778899999999999885533 1 11 1 1248899999999999999999999
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHh
Q 013867 304 TEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEAL 383 (435)
Q Consensus 304 ~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal 383 (435)
.++|.-+..|+--|..+..+++++.| .++.++|.++. |+-...-..|+.+|...|+|++||
T Consensus 228 ------~~~p~d~~LL~~Qa~fLl~k~~~~lA------L~iAk~av~ls-------P~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 228 ------KENPQDSELLNLQAEFLLSKKKYELA------LEIAKKAVELS-------PSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred ------HhCCCCHHHHHHHHHHHHhcCCHHHH------HHHHHHHHHhC-------chhHHHHHHHHHHHHhcCCHHHHH
Confidence 56777799999999999999998766 88899988887 676777778999999999999998
Q ss_pred hHh
Q 013867 384 SVQ 386 (435)
Q Consensus 384 ~~~ 386 (435)
..-
T Consensus 289 laL 291 (395)
T PF09295_consen 289 LAL 291 (395)
T ss_pred HHH
Confidence 653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0044 Score=64.40 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=79.0
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 306 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~ 306 (435)
|+-...+|+|.+|.+.|..||.| +++... +.+-.+.|.|.++...|+..||..--..|+.|
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~i--------dP~n~~--------~naklY~nra~v~~rLgrl~eaisdc~~Al~i--- 316 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNI--------DPSNKK--------TNAKLYGNRALVNIRLGRLREAISDCNEALKI--- 316 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcC--------Cccccc--------hhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---
Confidence 55667899999999999999999 121221 12335679999999999999999999999998
Q ss_pred hhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 307 LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 307 ~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
.|.....|---|..|..-++|++| ..-|++|+..-+.
T Consensus 317 -----D~syikall~ra~c~l~le~~e~A------V~d~~~a~q~~~s 353 (486)
T KOG0550|consen 317 -----DSSYIKALLRRANCHLALEKWEEA------VEDYEKAMQLEKD 353 (486)
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhccc
Confidence 466778888899999999998877 6778888776654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.032 Score=62.35 Aligned_cols=200 Identities=19% Similarity=0.249 Sum_probs=105.0
Q ss_pred hcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHh
Q 013867 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVA-AMEALAGLYLQ 158 (435)
Q Consensus 80 G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~va-ale~L~g~~~~ 158 (435)
|...+|+.+|.||-.. .-|-.+|.++|.|++|.++.+.- --|.+. |.-+-++ |++
T Consensus 814 gMlEeA~~lYr~ckR~----------------DLlNKlyQs~g~w~eA~eiAE~~-------DRiHLr~Tyy~yA~-~Le 869 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY----------------DLLNKLYQSQGMWSEAFEIAETK-------DRIHLRNTYYNYAK-YLE 869 (1416)
T ss_pred hhHHHHHHHHHHHHHH----------------HHHHHHHHhcccHHHHHHHHhhc-------cceehhhhHHHHHH-HHH
Confidence 4677999999998632 23667899999999998866531 111000 1101111 111
Q ss_pred cCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHH
Q 013867 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLL 238 (435)
Q Consensus 159 ~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~e 238 (435)
...| ....++.+++.+.-.++--.-|...-++|...+.... ++ ....-.|..+.++|+.|-
T Consensus 870 ar~D------i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~----------d~---~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 870 ARRD------IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKR----------DE---SLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred hhcc------HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhcc----------ch---HHHHHHHHHHhcccchHH
Confidence 1111 2234455555542112211222223333333332221 12 222235777889999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccc----cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 013867 239 AKKFYQKVIEVLAEQKDFSDMNTLGSC----NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 314 (435)
Q Consensus 239 Ae~ly~rAL~I~~~~~~~~~~~~l~~~----~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~ 314 (435)
|..+|..|-+-+...+- +-..|.. ....+--..++-.-||.-|..+|++.+|..+|+||-+.-..+-=-+--+
T Consensus 931 Al~~Y~~A~D~fs~VrI---~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 931 ALSFYSSAKDYFSMVRI---KCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND 1007 (1416)
T ss_pred HHHHHHHhhhhhhheee---EeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999988776543221 1111100 0000000124456799999999999999999999876544332222223
Q ss_pred HHHHHHHHHHH
Q 013867 315 VGVVLTCLALM 325 (435)
Q Consensus 315 va~~L~nLA~l 325 (435)
.-.-|-|||.+
T Consensus 1008 ~~d~L~nlal~ 1018 (1416)
T KOG3617|consen 1008 MKDRLANLALM 1018 (1416)
T ss_pred HHHHHHHHHhh
Confidence 44445555544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.077 Score=59.81 Aligned_cols=262 Identities=13% Similarity=-0.022 Sum_probs=146.0
Q ss_pred HHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcch----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 66 INYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESW----RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 66 ~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~----~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+-+|+.+. ++.+|++|..+..+.......- +|+- .|..--=-|.+...+|+.++|+.+.+.++......
T Consensus 419 ll~aW~~~----s~~r~~ea~~li~~l~~~l~~~---~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 419 LLQAWLLA----SQHRLAEAETLIARLEHFLKAP---MHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA 491 (894)
T ss_pred HHHHHHHH----HccChHHHHHHHHHHHHHhCcC---cccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc
Confidence 34555553 6789999999999987766542 2221 22222223556778999999999999997654322
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchh
Q 013867 142 -LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTG 220 (435)
Q Consensus 142 -L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~ 220 (435)
-..++..+-.++-..+-.|+++.|..+....-.+...++. ..+. .
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~------~~l~----------------------------~ 537 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV------YHLA----------------------------L 537 (894)
T ss_pred cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc------HHHH----------------------------H
Confidence 1122222222333333345554444333322222222111 0000 0
Q ss_pred HHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 221 SAALSYGEYLHATR--NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 221 ~~a~~la~~~~~~G--~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
.+.+--+.++..|| .|++.+.-|.+.-+-....+. .-+ =.+.--++++...-+++.++.-..
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~-----~~~-----------f~~~~r~~ll~~~~r~~~~~~ear 601 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP-----RHE-----------FLVRIRAQLLRAWLRLDLAEAEAR 601 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc-----cch-----------hHHHHHHHHHHHHHHHhhhhHHhh
Confidence 12222366788889 455555545444333222221 101 023445666766677999998888
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHH-HHhc
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVA-LARG 377 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~-~a~G 377 (435)
..+++.....-..|-.-+.. .+||.++..+|++++| -....+....+...+ .|++.-.+.+-....+ +.||
T Consensus 602 ~~~~~~~~~~~~~~~~~~~~-~~LA~l~~~~Gdl~~A------~~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg 673 (894)
T COG2909 602 LGIEVGSVYTPQPLLSRLAL-SMLAELEFLRGDLDKA------LAQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQG 673 (894)
T ss_pred hcchhhhhcccchhHHHHHH-HHHHHHHHhcCCHHHH------HHHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccC
Confidence 88887765554444444433 7999999999999888 344555555555444 5666333333333333 4899
Q ss_pred CHHHHhhHhhhhhhH
Q 013867 378 GYAEALSVQQNRKDE 392 (435)
Q Consensus 378 ~yaeal~~~~~r~~e 392 (435)
+++++-....+...+
T Consensus 674 ~~~~a~~~l~~s~~~ 688 (894)
T COG2909 674 DKELAAEWLLKSGDP 688 (894)
T ss_pred CHHHHHHHHHhccCc
Confidence 999887766554444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.016 Score=60.00 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+.+|+|.+|..+++|.+|+....++|++ .. + .+-+|+.-|+.|..+|+|+.|+..|++|+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---~~----~-------------N~KALyRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLEL---DP----N-------------NVKALYRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhc---CC----C-------------chhHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4567888999999999999999999998 11 1 23578999999999999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++. |+.-.+..-|.-|..-++ ++.+. .-.+|.+.+.-.
T Consensus 319 k~~-----P~Nka~~~el~~l~~k~~---~~~~k-----ekk~y~~mF~k~ 356 (397)
T KOG0543|consen 319 KLE-----PSNKAARAELIKLKQKIR---EYEEK-----EKKMYANMFAKL 356 (397)
T ss_pred HhC-----CCcHHHHHHHHHHHHHHH---HHHHH-----HHHHHHHHhhcc
Confidence 873 444444444444444333 33221 257788877665
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0052 Score=66.43 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+..-+|..+..+|++++|+..|+||+++. |+ +.+++.+|.+|..+|++++| ...|++|+.+-
T Consensus 422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA------~~~~~~A~~L~ 483 (517)
T PRK10153 422 IYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLA------ADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHH------HHHHHHHHhcC
Confidence 34567888888999999999999999986 54 68999999999999998876 89999998765
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0085 Score=64.81 Aligned_cols=75 Identities=12% Similarity=-0.018 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+...+|..+..+|++++|+..|+||++.. + +.-++..+|.+|..+|++++|.+.|++|
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------p-------------s~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--------M-------------SWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------C-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344445666667899999999999999881 1 1135778999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHH
Q 013867 301 LTKTEELFGSHHPKVGVVLTCL 322 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nL 322 (435)
+.+ .|.+|. -....||
T Consensus 480 ~~L-----~P~~pt-~~~~~~~ 495 (517)
T PRK10153 480 FNL-----RPGENT-LYWIENL 495 (517)
T ss_pred Hhc-----CCCCch-HHHHHhc
Confidence 874 677774 3344443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.21 Score=49.19 Aligned_cols=188 Identities=13% Similarity=0.096 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhc
Q 013867 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT 186 (435)
Q Consensus 107 ~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~e 186 (435)
.|..|..-+..|+.--+|++|-..+.+|.+-.|..... +.+| ..+...+-++..-.+ +.|
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl-----------------fhAA-KayEqaamLake~~k--lsE 89 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL-----------------FHAA-KAYEQAAMLAKELSK--LSE 89 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH-----------------HHHH-HHHHHHHHHHHHHHH--hHH
Confidence 34444445566788888888888888876544422110 1111 112222222221111 333
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q 013867 187 YGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN 266 (435)
Q Consensus 187 aeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~ 266 (435)
......+|+...+ -.|. |.+...++.-|.=.-..-+-++|.++|+|+++|.+....
T Consensus 90 --vvdl~eKAs~lY~--E~Gs---------pdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr----------- 145 (308)
T KOG1585|consen 90 --VVDLYEKASELYV--ECGS---------PDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDR----------- 145 (308)
T ss_pred --HHHHHHHHHHHHH--HhCC---------cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch-----------
Confidence 3334455554432 2233 222223333232223445789999999999999764221
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 013867 267 MALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP---KVGVVLTCLALMFRNKAMQEHSSALLIQEG 343 (435)
Q Consensus 267 ~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP---~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~ 343 (435)
++...--+...+.+|....+|+||-..+.+--.+..++---..| -|+.+| ||-...+| ..|+.
T Consensus 146 ---~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~il-----v~L~~~Dy------v~aek 211 (308)
T KOG1585|consen 146 ---DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAIL-----VYLYAHDY------VQAEK 211 (308)
T ss_pred ---HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHH-----HHhhHHHH------HHHHH
Confidence 11111234578899999999999999999988888887665555 333333 33333343 34477
Q ss_pred HHHHHHHHh
Q 013867 344 LYRRALEFL 352 (435)
Q Consensus 344 Ly~rAL~I~ 352 (435)
.|+.+-.|-
T Consensus 212 c~r~~~qip 220 (308)
T KOG1585|consen 212 CYRDCSQIP 220 (308)
T ss_pred HhcchhcCc
Confidence 777766554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.02 Score=58.74 Aligned_cols=134 Identities=14% Similarity=0.095 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF-ALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~-nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
-+++|.+.+..-.|.||++.|.|+|.- .. .. .++| ++|..|.++.=|+-+.+++
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~d---n~-----ey-------------~alNVy~ALCyyKlDYydvsqevl---- 208 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQD---NP-----EY-------------IALNVYMALCYYKLDYYDVSQEVL---- 208 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhc---Ch-----hh-------------hhhHHHHHHHHHhcchhhhHHHHH----
Confidence 367889989999999999999999865 11 12 2344 7999999999999887654
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHH--hhhhhhh----------hhhHHHHHHHHHHHHHhcCCCCCC----Cc----
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRN--KAMQEHS----------SALLIQEGLYRRALEFLKAPPLES----EG---- 361 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~--qG~~e~A----------~~~~~Ae~Ly~rAL~I~k~~~~~h----p~---- 361 (435)
..+- ..||+--.+.|-.|....+ .|+..++ ++|.+++.+.+--|-+++- |.+. |.
T Consensus 209 ~vYL----~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrn-gEgALqVLP~L~~~ 283 (557)
T KOG3785|consen 209 KVYL----RQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRN-GEGALQVLPSLMKH 283 (557)
T ss_pred HHHH----HhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeC-CccHHHhchHHHhh
Confidence 3333 3677776776665554432 2333222 2455677777766655542 1111 21
Q ss_pred hhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 362 VETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 362 ~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
+...--|+.+-|+.|++..||..+.
T Consensus 284 IPEARlNL~iYyL~q~dVqeA~~L~ 308 (557)
T KOG3785|consen 284 IPEARLNLIIYYLNQNDVQEAISLC 308 (557)
T ss_pred ChHhhhhheeeecccccHHHHHHHH
Confidence 2223347888899999999997764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.013 Score=54.08 Aligned_cols=111 Identities=19% Similarity=0.115 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 273 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 273 ~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++..+...|--+..+|||++|+.+|+-. .+ +++..|+. ...||.+|+.+++|++| ..+|-.|..+.
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L-~~----~d~~n~~Y---~~GLaa~~Q~~k~y~~A------i~~Y~~A~~l~ 101 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFL-CI----YDFYNPDY---TMGLAAVCQLKKQFQKA------CDLYAVAFTLL 101 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH-HH----hCcCcHHH---HHHHHHHHHHHHHHHHH------HHHHHHHHHcc
Confidence 4567778888889999999999999644 33 66666775 68999999999998876 89998888776
Q ss_pred cCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhh--hhHHHHHHHHHHHHh
Q 013867 353 KAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNR--KDEGERMKRWAEAAW 404 (435)
Q Consensus 353 k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r--~~eae~~~~~a~~~~ 404 (435)
+ +.|. .....+.+++..|+.++|...++.. ..+=..++.+|..+-
T Consensus 102 ~----~dp~---p~f~agqC~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~~~L 148 (165)
T PRK15331 102 K----NDYR---PVFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYL 148 (165)
T ss_pred c----CCCC---ccchHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 3 3332 2446899999999999998875222 344566777776654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.012 Score=59.94 Aligned_cols=131 Identities=9% Similarity=0.009 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC-CHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG-NFGDAEEIL 297 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG-~y~eAe~l~ 297 (435)
...+...+-.++...+++++|..++.++|++ . |++. .+.+..+.++..+| ++++|..++
T Consensus 36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~l-----------n-------P~~y--taW~~R~~iL~~L~~~l~eeL~~~ 95 (320)
T PLN02789 36 FREAMDYFRAVYASDERSPRALDLTADVIRL-----------N-------PGNY--TVWHFRRLCLEALDADLEEELDFA 95 (320)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----------C-------chhH--HHHHHHHHHHHHcchhHHHHHHHH
Confidence 3344444555677788888888888888877 1 2222 34567777777777 577888888
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhc
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG 377 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G 377 (435)
.+++.+ +|+-..+.++.+.++...|+.. +.++..++.++|++- |.-.-.-++++.++...|
T Consensus 96 ~~~i~~--------npknyqaW~~R~~~l~~l~~~~----~~~el~~~~kal~~d-------pkNy~AW~~R~w~l~~l~ 156 (320)
T PLN02789 96 EDVAED--------NPKNYQIWHHRRWLAEKLGPDA----ANKELEFTRKILSLD-------AKNYHAWSHRQWVLRTLG 156 (320)
T ss_pred HHHHHH--------CCcchHHhHHHHHHHHHcCchh----hHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHhh
Confidence 877764 6666666788887777776531 112356666666554 222335566777777777
Q ss_pred CHHHHhhHhhh
Q 013867 378 GYAEALSVQQN 388 (435)
Q Consensus 378 ~yaeal~~~~~ 388 (435)
+|.+++....+
T Consensus 157 ~~~eeL~~~~~ 167 (320)
T PLN02789 157 GWEDELEYCHQ 167 (320)
T ss_pred hHHHHHHHHHH
Confidence 77777766544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.14 Score=43.86 Aligned_cols=196 Identities=22% Similarity=0.247 Sum_probs=118.1
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
.+.+.+++..+...+.. ...+.....+..++..+...++|.+|++.++++........... ... ..+.+..
T Consensus 72 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~ 142 (291)
T COG0457 72 LGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAE--ALL-ALGALYE 142 (291)
T ss_pred cccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHH--HHH-HHHHHHH
Confidence 45677777777777654 23456677777778888888888888877777654322110000 000 0001222
Q ss_pred cCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHH
Q 013867 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLL 238 (435)
Q Consensus 159 ~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~e 238 (435)
++. +..+ .....+++. ..+.. ..........+..+...|++++
T Consensus 143 ~~~----------------------~~~a--~~~~~~~~~-----~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 185 (291)
T COG0457 143 LGD----------------------YEEA--LELYEKALE-----LDPEL--------NELAEALLALGALLEALGRYEE 185 (291)
T ss_pred cCC----------------------HHHH--HHHHHHHHh-----cCCCc--------cchHHHHHHhhhHHHHhcCHHH
Confidence 222 2211 112222211 11100 0112233344445778899999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 013867 239 AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVV 318 (435)
Q Consensus 239 Ae~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~ 318 (435)
|...+.+++.+... .. .....+++..|..+|++++|...+.+++..... ....
T Consensus 186 a~~~~~~~~~~~~~--------~~-----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~ 238 (291)
T COG0457 186 ALELLEKALKLNPD--------DD-----------AEALLNLGLLYLKLGKYEEALEYYEKALELDPD--------NAEA 238 (291)
T ss_pred HHHHHHHHHhhCcc--------cc-----------hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--------cHHH
Confidence 99999999998311 00 134678999999999999999999999998776 6667
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 319 LTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 319 L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
+..++..+...|.++++ ...+.+++....
T Consensus 239 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 267 (291)
T COG0457 239 LYNLALLLLELGRYEEA------LEALEKALELDP 267 (291)
T ss_pred HhhHHHHHHHcCCHHHH------HHHHHHHHHhCc
Confidence 77788888766655554 677777777663
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.016 Score=61.29 Aligned_cols=135 Identities=19% Similarity=0.139 Sum_probs=88.3
Q ss_pred hcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 013867 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (435)
Q Consensus 80 G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~ 159 (435)
|+|++|+..+..-+ .++|+-.-.+...+.++...|++.+|++.++++++......-.. =+++..++..
T Consensus 320 ~~~d~A~~~l~~L~--------~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~----~~~a~all~~ 387 (484)
T COG4783 320 GQYDEALKLLQPLI--------AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQ----LNLAQALLKG 387 (484)
T ss_pred cccchHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHH----HHHHHHHHhc
Confidence 44445555554433 45677777788899999999999999999999988776431111 1455667777
Q ss_pred CCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHH
Q 013867 160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLA 239 (435)
Q Consensus 160 g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eA 239 (435)
|...+|....+ -+.... .++..-+...+++-.. + |+ ...+...+|+.|...|+|++|
T Consensus 388 g~~~eai~~L~----~~~~~~---p~dp~~w~~LAqay~~----~-g~-----------~~~a~~A~AE~~~~~G~~~~A 444 (484)
T COG4783 388 GKPQEAIRILN----RYLFND---PEDPNGWDLLAQAYAE----L-GN-----------RAEALLARAEGYALAGRLEQA 444 (484)
T ss_pred CChHHHHHHHH----HHhhcC---CCCchHHHHHHHHHHH----h-Cc-----------hHHHHHHHHHHHHhCCCHHHH
Confidence 87765543322 222222 2233444445544332 2 32 234566788999999999999
Q ss_pred HHHHHHHHHH
Q 013867 240 KKFYQKVIEV 249 (435)
Q Consensus 240 e~ly~rAL~I 249 (435)
+.++.+|.+-
T Consensus 445 ~~~l~~A~~~ 454 (484)
T COG4783 445 IIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHh
Confidence 9999999987
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.093 Score=53.86 Aligned_cols=220 Identities=16% Similarity=0.148 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+.+|.++-..+ .+....|+|..|+++..+.|+|. ||-|..+-..|..|...|+...||.=++++..+....
T Consensus 152 ~~e~~~l~~ql-~s~~~~GD~~~ai~~i~~llEi~--------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn 222 (504)
T KOG0624|consen 152 IQEHWVLVQQL-KSASGSGDCQNAIEMITHLLEIQ--------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN 222 (504)
T ss_pred HHHHHHHHHHH-HHHhcCCchhhHHHHHHHHHhcC--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc
Confidence 44555555444 33346789999999999999887 8999999999999999999999999988886554322
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhH
Q 013867 142 LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGS 221 (435)
Q Consensus 142 L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~ 221 (435)
- .++-...-+++..|....++.....|+.+- + |+.--+..-+-++.+++.+-
T Consensus 223 T----e~~ykis~L~Y~vgd~~~sL~~iRECLKld----p----dHK~Cf~~YKklkKv~K~le---------------- 274 (504)
T KOG0624|consen 223 T----EGHYKISQLLYTVGDAENSLKEIRECLKLD----P----DHKLCFPFYKKLKKVVKSLE---------------- 274 (504)
T ss_pred h----HHHHHHHHHHHhhhhHHHHHHHHHHHHccC----c----chhhHHHHHHHHHHHHHHHH----------------
Confidence 1 112222333445554333332223333221 1 11112222222222222110
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
-+.-...+++|.++.+-+++.|.- .|...+ +++...--+-..|..-|++.||..-..++|
T Consensus 275 ----s~e~~ie~~~~t~cle~ge~vlk~---------ep~~~~-------ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 275 ----SAEQAIEEKHWTECLEAGEKVLKN---------EPEETM-------IRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred ----HHHHHHhhhhHHHHHHHHHHHHhc---------CCcccc-------eeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 012234567777777777777644 011010 011122234455667777888877777777
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.| .|+-+.+|...|..|-.--.|+.| +.=|++|++.-
T Consensus 335 ~~--------d~~dv~~l~dRAeA~l~dE~YD~A------I~dye~A~e~n 371 (504)
T KOG0624|consen 335 DI--------DPDDVQVLCDRAEAYLGDEMYDDA------IHDYEKALELN 371 (504)
T ss_pred hc--------CchHHHHHHHHHHHHhhhHHHHHH------HHHHHHHHhcC
Confidence 65 577777777777777766665544 66677776654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.31 Score=54.34 Aligned_cols=250 Identities=14% Similarity=0.048 Sum_probs=143.9
Q ss_pred cHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHhc
Q 013867 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF-KNSILGVRVAAMEALAGLYLQL 159 (435)
Q Consensus 81 ~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i-~e~~L~i~vaale~L~g~~~~~ 159 (435)
...++++.||+|+++. +++| .+++++|.-|..|++.+.|.+..++++++ ..... .+|--|+-+.-.+
T Consensus 459 ~h~kslqale~av~~d-----~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~----~~whLLALvlSa~ 526 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFD-----PTDP---LVIFYLALQYAEQRQLTSALDYAREALALNRGDSA----KAWHLLALVLSAQ 526 (799)
T ss_pred HHHHHHHHHHHHHhcC-----CCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccH----HHHHHHHHHHhhh
Confidence 4557888888888655 4445 78899999999999999999999999887 33321 1222222222223
Q ss_pred CCCcchHHHHHHHHHHHHhcC---------CCchhchhhHH---HHHHHHHHH---HHHhcCCCcccccccccchhHHHH
Q 013867 160 GQDDTSSVVADKCLQLCEKHK---------PENYKTYGAVN---SRANAVKGL---VELAHGNLESGLQEEEGCTGSAAL 224 (435)
Q Consensus 160 g~~~~A~~~~~~~~~l~~~~~---------~~~~~eaeal~---~~a~Ai~~~---~~~lgg~h~~a~~~~~~~~~~~a~ 224 (435)
+++..|+.+.+..++-..... ..++++.+... ....++... ++..+++ +...-
T Consensus 527 kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~------------g~~~~ 594 (799)
T KOG4162|consen 527 KRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDE------------GKLLR 594 (799)
T ss_pred hhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhh------------hhhhh
Confidence 444555555554443222100 01122221111 111111110 0011110 00111
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCC-----C--CcccccccchHHHHHHHH-HHHHHHHHcCCHHHHHHH
Q 013867 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM-----N--TLGSCNMALEEVALAATF-ALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 225 ~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~-----~--~l~~~~~~~~~~~l~~l~-nLa~ly~~qG~y~eAe~l 296 (435)
.-+.+.-.+++-.+|...+++++.+.+.... +-. | +.-+.++. .+.+...+. -.|.++...+.-++|--+
T Consensus 595 lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~-~~~se~~Lp~s~~~~~~~~-~~~~~~~lwllaa~~~~~~~~~~~a~~C 672 (799)
T KOG4162|consen 595 LKAGLHLALSQPTDAISTSRYLSSLVASQLK-SAGSELKLPSSTVLPGPDS-LWYLLQKLWLLAADLFLLSGNDDEARSC 672 (799)
T ss_pred hhcccccCcccccccchhhHHHHHHHHhhhh-hcccccccCcccccCCCCc-hHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 1122333466778888888888888763222 111 0 01111111 112223333 457788888889999989
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
+.+|-.|. |..+.+++-.|.++..+|+.++| ...|.-|+.+ .|+|+. ++.-+|.++...
T Consensus 673 L~Ea~~~~--------~l~~~~~~~~G~~~~~~~~~~EA------~~af~~Al~l----dP~hv~---s~~Ala~~lle~ 731 (799)
T KOG4162|consen 673 LLEASKID--------PLSASVYYLRGLLLEVKGQLEEA------KEAFLVALAL----DPDHVP---SMTALAELLLEL 731 (799)
T ss_pred HHHHHhcc--------hhhHHHHHHhhHHHHHHHhhHHH------HHHHHHHHhc----CCCCcH---HHHHHHHHHHHh
Confidence 99988886 88999999999999999998876 6777777765 477776 333467777666
Q ss_pred c
Q 013867 377 G 377 (435)
Q Consensus 377 G 377 (435)
|
T Consensus 732 G 732 (799)
T KOG4162|consen 732 G 732 (799)
T ss_pred C
Confidence 6
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.002 Score=42.82 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 108 A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
|.++.++|.+|..+|+|++|++.|++++++.+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 56899999999999999999999999987654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0074 Score=55.70 Aligned_cols=97 Identities=9% Similarity=-0.011 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 220 ~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~r 299 (435)
......+|--+..+|+|++|+.+|+--.-. + + . ++ .-+.+||.+++.+|+|++|..+|..
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-----d---~---~----n~-----~Y~~GLaa~~Q~~k~y~~Ai~~Y~~ 96 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIY-----D---F---Y----NP-----DYTMGLAAVCQLKKQFQKACDLYAV 96 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C---c---C----cH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667899999999999866544 1 1 0 12 2357999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 013867 300 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 350 (435)
Q Consensus 300 AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~ 350 (435)
|..+.. +.|.. ....|..|-..|+.++| ...|.-+++
T Consensus 97 A~~l~~-----~dp~p---~f~agqC~l~l~~~~~A------~~~f~~a~~ 133 (165)
T PRK15331 97 AFTLLK-----NDYRP---VFFTGQCQLLMRKAAKA------RQCFELVNE 133 (165)
T ss_pred HHHccc-----CCCCc---cchHHHHHHHhCCHHHH------HHHHHHHHh
Confidence 988754 44433 67899999999997776 677777666
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.007 Score=54.26 Aligned_cols=92 Identities=15% Similarity=0.095 Sum_probs=71.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q 013867 280 LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLES 359 (435)
Q Consensus 280 La~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~h 359 (435)
-|..+..-|+.++|.++|.|||... |.-+++|||.|..|+-||+.++| ..=..+|+++. |+..
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~A------LdDLn~AleLa---g~~t 111 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEA------LDDLNKALELA---GDQT 111 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHH------HHHHHHHHHhc---Cccc
Confidence 3667778899999999999999874 67789999999999999998877 67788999886 3332
Q ss_pred CchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 360 EGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 360 p~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
-..-.+.-.++++|..+|+-+.|-.-++.
T Consensus 112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~ 140 (175)
T KOG4555|consen 112 RTACQAFVQRGLLYRLLGNDDAARADFEA 140 (175)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHhHHH
Confidence 22223344688999999988877665543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.047 Score=60.28 Aligned_cols=172 Identities=17% Similarity=0.155 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcC-CCch
Q 013867 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK-PENY 184 (435)
Q Consensus 106 ~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~-~~~~ 184 (435)
-.-..---++.++.+-|=-.+|+..|+|- ..+..+.-+|...|+...|.....+. +++.- +.-|
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl------------emw~~vi~CY~~lg~~~kaeei~~q~---lek~~d~~ly 460 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL------------EMWDPVILCYLLLGQHGKAEEINRQE---LEKDPDPRLY 460 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH------------HHHHHHHHHHHHhcccchHHHHHHHH---hcCCCcchhH
Confidence 33444456788888899888888888773 23455566677777666655332221 11111 1001
Q ss_pred ---hch-hhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCC
Q 013867 185 ---KTY-GAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMN 260 (435)
Q Consensus 185 ---~ea-eal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~ 260 (435)
+|. ....++.+|... .....+.+-.++|....++++|+++...++++++|
T Consensus 461 c~LGDv~~d~s~yEkawEl---------------sn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~----------- 514 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWEL---------------SNYISARAQRSLALLILSNKDFSEADKHLERSLEI----------- 514 (777)
T ss_pred HHhhhhccChHHHHHHHHH---------------hhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc-----------
Confidence 111 112233343332 11111112223344445689999999999999999
Q ss_pred CcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 261 TLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 261 ~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
..+ ..++..++|-++...+|+..|-..|.+++.. -|+-+.+-|||+..|-..|+-.+|
T Consensus 515 npl---------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 515 NPL---------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred Ccc---------chhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHH
Confidence 111 3467899999999999999999999999875 467799999999999999987766
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.18 Score=56.07 Aligned_cols=139 Identities=19% Similarity=0.183 Sum_probs=101.8
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE----AHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly----~~qG~y~eAe~l~~rAL~ 302 (435)
..++.+-|.+++++.+-+||+.......+ .+. -.+..-+|..| ..--..++=+.+..++|+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~-----~l~----------~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslq 465 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRS-----HLK----------PRGYLFLGIAYGFQARQANLKSERDALHKKSLQ 465 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhh-----hhh----------hhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH
Confidence 34667899999999999999997533332 121 12333444444 445567778888888888
Q ss_pred HHHHh--hCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHH
Q 013867 303 KTEEL--FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYA 380 (435)
Q Consensus 303 I~e~~--lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ya 380 (435)
-.|+. |++..| .++.+||.-|..|++.+.| ....+++|+.-. - +.+...+-++++..+++||.
T Consensus 466 ale~av~~d~~dp---~~if~lalq~A~~R~l~sA------l~~~~eaL~l~~---~---~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 466 ALEEAVQFDPTDP---LVIFYLALQYAEQRQLTSA------LDYAREALALNR---G---DSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred HHHHHHhcCCCCc---hHHHHHHHHHHHHHhHHHH------HHHHHHHHHhcC---C---ccHHHHHHHHHHHhhhhhhH
Confidence 88888 566666 6789999999999986655 677888887731 1 33557778999999999999
Q ss_pred HHhhHhhhhhhHHHH
Q 013867 381 EALSVQQNRKDEGER 395 (435)
Q Consensus 381 eal~~~~~r~~eae~ 395 (435)
+|+.+......|...
T Consensus 531 ~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 531 EALDVVDAALEEFGD 545 (799)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999998777777433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.017 Score=51.80 Aligned_cols=94 Identities=14% Similarity=0.098 Sum_probs=75.6
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 229 ~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
.+..-|+.+.|+++|.+||.+. |+ ...++||-++.|.-||+-++|..=+.+||+. -
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~------------------P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleL----a 107 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA------------------PE--RASAYNNRAQALRLQGDDEEALDDLNKALEL----A 107 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc------------------cc--chHhhccHHHHHHHcCChHHHHHHHHHHHHh----c
Confidence 3456799999999999999883 11 1246899999999999999999999999986 3
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 309 GSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 309 G~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|+.--.--.++.-.|.+|+.+|+-+.| ..=|++|-++-
T Consensus 108 g~~trtacqa~vQRg~lyRl~g~dd~A------R~DFe~AA~LG 145 (175)
T KOG4555|consen 108 GDQTRTACQAFVQRGLLYRLLGNDDAA------RADFEAAAQLG 145 (175)
T ss_pred CccchHHHHHHHHHHHHHHHhCchHHH------HHhHHHHHHhC
Confidence 666444456788899999999998877 66677777664
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.056 Score=54.23 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCH-HHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF-GDAEEIL 297 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y-~eAe~l~ 297 (435)
...+.+.+|.++-.+|+|+||+.+.++|++. . + .+ -.++.|+..+...+|+- +.+++++
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-----~---~----------~~--~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEK-----D---P----------ND--PDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------C----------CH--HHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----c---c----------CC--HHHHHHHHHHHHHhCCChhHHHHHH
Confidence 4566777888999999999999999998743 1 1 11 14678999999999999 5577777
Q ss_pred HHHHHHHHHhhCCCChhHHH
Q 013867 298 TRTLTKTEELFGSHHPKVGV 317 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~ 317 (435)
.+.. ..-|+||-+..
T Consensus 260 ~qL~-----~~~p~h~~~~~ 274 (290)
T PF04733_consen 260 SQLK-----QSNPNHPLVKD 274 (290)
T ss_dssp HHCH-----HHTTTSHHHHH
T ss_pred HHHH-----HhCCCChHHHH
Confidence 6633 34788998754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.18 Score=49.80 Aligned_cols=186 Identities=17% Similarity=0.120 Sum_probs=110.8
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
|++-=.+ .+++-+|... .|+.+-|..++.+-..-. |..+-|... =|.++...|.|++|++.|..-
T Consensus 48 g~e~w~l-~EqV~IAAld------~~~~~lAq~C~~~L~~~f-----p~S~RV~~l---kam~lEa~~~~~~A~e~y~~l 112 (289)
T KOG3060|consen 48 GDEIWTL-YEQVFIAALD------TGRDDLAQKCINQLRDRF-----PGSKRVGKL---KAMLLEATGNYKEAIEYYESL 112 (289)
T ss_pred CchHHHH-HHHHHHHHHH------hcchHHHHHHHHHHHHhC-----CCChhHHHH---HHHHHHHhhchhhHHHHHHHH
Confidence 4444333 3444455554 246678888888755333 334444443 366899999999999999986
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHH---hcCCCccc
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVEL---AHGNLESG 211 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~---lgg~h~~a 211 (435)
+.-.+....+ ..+-+.++..+|+ +..+|+++.+. .-.+
T Consensus 113 L~ddpt~~v~------------------------~KRKlAilka~GK-----------~l~aIk~ln~YL~~F~~D---- 153 (289)
T KOG3060|consen 113 LEDDPTDTVI------------------------RKRKLAILKAQGK-----------NLEAIKELNEYLDKFMND---- 153 (289)
T ss_pred hccCcchhHH------------------------HHHHHHHHHHcCC-----------cHHHHHHHHHHHHHhcCc----
Confidence 4432222222 2233344444442 11333333322 2222
Q ss_pred ccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCC--
Q 013867 212 LQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN-- 289 (435)
Q Consensus 212 ~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~-- 289 (435)
..+-.-++++|-+.|+|++|.-+|+..+=|- ++++ .....||.+++.+|-
T Consensus 154 --------~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-------P~n~-------------l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 154 --------QEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-------PFNP-------------LYFQRLAEVLYTQGGAE 205 (289)
T ss_pred --------HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-------CCcH-------------HHHHHHHHHHHHHhhHH
Confidence 2344557889999999999999999999771 1100 223478999988885
Q ss_pred -HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 013867 290 -FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM 325 (435)
Q Consensus 290 -y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~l 325 (435)
+.-|.++|.|||.|..+.+ |--.+..|.+-+.+
T Consensus 206 N~~~arkyy~~alkl~~~~~---ral~GI~lc~~~la 239 (289)
T KOG3060|consen 206 NLELARKYYERALKLNPKNL---RALFGIYLCGSALA 239 (289)
T ss_pred HHHHHHHHHHHHHHhChHhH---HHHHHHHHHHHHHH
Confidence 5558999999999976321 33344455544444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0034 Score=41.69 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
+++++|.+|..+|+|++|+..|+|||+|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 57899999999999999999999999984
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.28 Score=49.62 Aligned_cols=205 Identities=18% Similarity=0.137 Sum_probs=120.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 54 NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 54 ~g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~r 133 (435)
.+...|..-..+.-+|.+|.+.| +|.+|-.+|+| ++-.||..++--.--|..+++-|.|++|......
T Consensus 36 ~~Er~p~~rAgLSlLgyCYY~~Q----~f~~AA~CYeQ--------L~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 36 ELERSPRSRAGLSLLGYCYYRLQ----EFALAAECYEQ--------LGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred HHhcCccchHHHHHHHHHHHHHH----HHHHHHHHHHH--------HHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 35666766677888999997765 89999999998 5677899999988899999999999999988776
Q ss_pred HHH---hhhhhHHHHHHHH---HHHHHH--HHhcCC-CcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHh
Q 013867 134 VEN---FKNSILGVRVAAM---EALAGL--YLQLGQ-DDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELA 204 (435)
Q Consensus 134 al~---i~e~~L~i~vaal---e~L~g~--~~~~g~-~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~l 204 (435)
..+ +.++++....+.. +.+.|. ..++-| ...|- ...+...+.-+.+ .|+ +++..+..|+. +
T Consensus 104 ~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad-~~in~gCllykeg--qyE--aAvqkFqaAlq-----v 173 (459)
T KOG4340|consen 104 LLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEAD-GQINLGCLLYKEG--QYE--AAVQKFQAALQ-----V 173 (459)
T ss_pred hcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccc-hhccchheeeccc--cHH--HHHHHHHHHHh-----h
Confidence 554 3334433222110 111110 111112 11111 1111122222222 243 33333333332 4
Q ss_pred cCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHH---------
Q 013867 205 HGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA--------- 275 (435)
Q Consensus 205 gg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~--------- 275 (435)
+|-. +.++.|+|....+.|+|+.|..+--..++ .|..+||.+|-+ |..+.+.+.
T Consensus 174 sGyq-----------pllAYniALaHy~~~qyasALk~iSEIie-----RG~r~HPElgIG-m~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 174 SGYQ-----------PLLAYNLALAHYSSRQYASALKHISEIIE-----RGIRQHPELGIG-MTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred cCCC-----------chhHHHHHHHHHhhhhHHHHHHHHHHHHH-----hhhhcCCccCcc-ceeccCchhcccchHHHH
Confidence 4431 25788889889999999999988765443 344567776632 111111111
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHH
Q 013867 276 ------ATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 276 ------~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
++|--+.++...|+|+-|.+-+
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 2222366788899998887644
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.03 Score=61.84 Aligned_cols=190 Identities=17% Similarity=0.128 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---hhHHHHHHHHH-HHHHHHHhcCCCcchHHHHHHHHHHHHhcCCC
Q 013867 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKN---SILGVRVAAME-ALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (435)
Q Consensus 107 ~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e---~~L~i~vaale-~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~ 182 (435)
|.+.--.+|.-+..+|+||.|+-+|-.+..+.. ..+|.+ .|. .+..+.--|.+. .++-++-..++-+.+.+
T Consensus 705 vv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~ak--ew~kai~ildniqdqk-~~s~yy~~iadhyan~~-- 779 (1636)
T KOG3616|consen 705 VVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAK--EWKKAISILDNIQDQK-TASGYYGEIADHYANKG-- 779 (1636)
T ss_pred HhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhh--hhhhhHhHHHHhhhhc-cccccchHHHHHhccch--
Confidence 555566788889999999999999976644322 122211 111 111111111111 12222222333332222
Q ss_pred chhchhhHHHHHHHHHH--HHHHhcCCCcccccccccchhHHH--HH---HHHHHHHhhchHHHHHHH------HHHHHH
Q 013867 183 NYKTYGAVNSRANAVKG--LVELAHGNLESGLQEEEGCTGSAA--LS---YGEYLHATRNFLLAKKFY------QKVIEV 249 (435)
Q Consensus 183 ~~~eaeal~~~a~Ai~~--~~~~lgg~h~~a~~~~~~~~~~~a--~~---la~~~~~~G~y~eAe~ly------~rAL~I 249 (435)
.|+-++.++..+--.+. ..+.-.|++.+|..+.+.|++.-+ .. -++=+..+|+|.||++|| .+|+.+
T Consensus 780 dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqm 859 (1636)
T KOG3616|consen 780 DFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQM 859 (1636)
T ss_pred hHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHH
Confidence 24445554433211111 111122344333333333332221 11 245567899999999999 477777
Q ss_pred HHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 250 LAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
+.+.....+.--+- ..++++|+. .+-..+|.-|...|+..+||+.|.+|-.-
T Consensus 860 ydk~~~~ddmirlv-~k~h~d~l~-dt~~~f~~e~e~~g~lkaae~~flea~d~ 911 (1636)
T KOG3616|consen 860 YDKHGLDDDMIRLV-EKHHGDHLH-DTHKHFAKELEAEGDLKAAEEHFLEAGDF 911 (1636)
T ss_pred HHhhCcchHHHHHH-HHhChhhhh-HHHHHHHHHHHhccChhHHHHHHHhhhhH
Confidence 65432211000000 112355443 34457889999999999999999887554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0045 Score=40.74 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 108 A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
|..+..||.+|..+|+|++|++.|++++.+.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 46789999999999999999999999977643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.22 Score=56.92 Aligned_cols=221 Identities=14% Similarity=0.101 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 013867 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQD 162 (435)
Q Consensus 83 ~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~ 162 (435)
..|...|-+++.+. |..|..+..||..|++.-+...|-..|.+|.++... .+.+.......|-+....
T Consensus 475 ~~al~ali~alrld--------~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat----daeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 475 ALALHALIRALRLD--------VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT----DAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHHHHHHHHHhcc--------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch----hhhhHHHHHHHhhccccH
Confidence 35555566665443 678899999999999999999999999999775422 233344444555444433
Q ss_pred cchHHHHHHHHHHHHhcCCCchhch-hhHHHHHHHHHHHHHHhcCCCccccc------ccccchhHHHHHHHHHHHHhhc
Q 013867 163 DTSSVVADKCLQLCEKHKPENYKTY-GAVNSRANAVKGLVELAHGNLESGLQ------EEEGCTGSAALSYGEYLHATRN 235 (435)
Q Consensus 163 ~~A~~~~~~~~~l~~~~~~~~~~ea-eal~~~a~Ai~~~~~~lgg~h~~a~~------~~~~~~~~~a~~la~~~~~~G~ 235 (435)
+.|+.. |+...++... ... +.+ .. ++..+.--++|..+-. -.+|...+...++|+.|.+.|+
T Consensus 543 e~a~~I---~l~~~qka~a---~~~k~nW---~~--rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr 611 (1238)
T KOG1127|consen 543 EEAFEI---CLRAAQKAPA---FACKENW---VQ--RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR 611 (1238)
T ss_pred HHHHHH---HHHHhhhchH---HHHHhhh---hh--ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc
Confidence 443332 2333222110 000 000 00 1111111111111000 0135566788889999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH
Q 013867 236 FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 315 (435)
Q Consensus 236 y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v 315 (435)
|.-|...|.||.... |++ ..+-.--+...+.+|+|.+|...++..+..++.-.- ---..
T Consensus 612 y~~AlKvF~kAs~Lr------------------P~s--~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~-~q~gL 670 (1238)
T KOG1127|consen 612 YSHALKVFTKASLLR------------------PLS--KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT-GQNGL 670 (1238)
T ss_pred eehHHHhhhhhHhcC------------------cHh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-hhhhH
Confidence 999999999998771 221 134567888999999999999999888776654321 11235
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 316 GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 316 a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
+.++..++..+..+|=+-+| -..++++++++.
T Consensus 671 aE~~ir~akd~~~~gf~~ka------vd~~eksie~f~ 702 (1238)
T KOG1127|consen 671 AESVIRDAKDSAITGFQKKA------VDFFEKSIESFI 702 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHH
Confidence 66677777777777765555 566777777664
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.13 Score=45.38 Aligned_cols=121 Identities=21% Similarity=0.190 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q 013867 106 WRGISLLAMSTL--LYESGNYVEAIEKLQKVENFKNSIL--------GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQL 175 (435)
Q Consensus 106 ~~A~~l~nLa~l--y~~qGky~eA~~l~~ral~i~e~~L--------~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l 175 (435)
.|+.+|..|+.- ...-|-|++|..-+++|+++..++. |++.-.--.|.+....+|.+++++..++..+..
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 478888888776 4567999999999999999876542 222111112334444557777766666666555
Q ss_pred HHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcc
Q 013867 176 CEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD 255 (435)
Q Consensus 176 ~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~ 255 (435)
....+..+.++- .....++.+-|..+...|+.+||...|+.+-+++.++||
T Consensus 85 FNRRGEL~qdeG-----------------------------klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 85 FNRRGELHQDEG-----------------------------KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHHH--TTSTHH-----------------------------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred Hhhccccccccc-----------------------------hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 544332111100 011234566677788999999999999999999998887
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.12 Score=51.25 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
..++.++.+...||+|+||+.+++.||.. .|.+..+|.|+=.+-..+|+-.++ -.|=|.-.+.
T Consensus 208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~---------~~r~l~QLk~ 270 (299)
T KOG3081|consen 208 LLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEV---------TERNLSQLKL 270 (299)
T ss_pred HHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHH---------HHHHHHHHHh
Confidence 46789999999999999999999999974 455577888888888889987654 4555555666
Q ss_pred CCCCCCc
Q 013867 355 PPLESEG 361 (435)
Q Consensus 355 ~~~~hp~ 361 (435)
..|+||-
T Consensus 271 ~~p~h~~ 277 (299)
T KOG3081|consen 271 SHPEHPF 277 (299)
T ss_pred cCCcchH
Confidence 6788874
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.21 Score=49.67 Aligned_cols=114 Identities=21% Similarity=0.144 Sum_probs=85.3
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 306 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~ 306 (435)
|.+|..-|+|++|+..-.+...+ .+.++++ +++.++-|+|-|+...++..+|-+.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~l-----------------------E~~Al~V--qI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENL-----------------------EAAALNV--QILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchH-----------------------HHHHHHH--HHHHHHHHHHHHHHHHHHHHccchH
Confidence 56788999999998776663332 1233443 3567889999999999999999775
Q ss_pred hhCCCChhHHHHHHHHHHHHHH--hhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhh
Q 013867 307 LFGSHHPKVGVVLTCLALMFRN--KAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALS 384 (435)
Q Consensus 307 ~lG~~HP~va~~L~nLA~ly~~--qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~ 384 (435)
.+|+-||..|-. +|. +. ++-|.-|++.+...-|.|...++..++++..+|||+||..
T Consensus 170 ----------~tLtQLA~awv~la~gg----------ek-~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 170 ----------ATLTQLAQAWVKLATGG----------EK-IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred ----------HHHHHHHHHHHHHhccc----------hh-hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHH
Confidence 366777776654 232 23 6777778876666567778899999999999999999987
Q ss_pred Hh
Q 013867 385 VQ 386 (435)
Q Consensus 385 ~~ 386 (435)
+-
T Consensus 229 lL 230 (299)
T KOG3081|consen 229 LL 230 (299)
T ss_pred HH
Confidence 65
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.046 Score=57.88 Aligned_cols=91 Identities=16% Similarity=0.054 Sum_probs=71.4
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|+......-.+.++...+++++|.+.+++++... ++. . .-..|+|++|...|+++||+..
T Consensus 337 P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~------P~~---~-----------~l~~~~a~all~~g~~~eai~~ 396 (484)
T COG4783 337 PDNPYYLELAGDILLEANKAKEAIERLKKALALD------PNS---P-----------LLQLNLAQALLKGGKPQEAIRI 396 (484)
T ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCc---c-----------HHHHHHHHHHHhcCChHHHHHH
Confidence 4433444445678999999999999999999871 111 1 1236999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
+.+.+. +.|+-...+.-||..|..+|+..++
T Consensus 397 L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 397 LNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHhh--------cCCCCchHHHHHHHHHHHhCchHHH
Confidence 988764 6778888899999999999998776
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.48 Score=40.50 Aligned_cols=222 Identities=22% Similarity=0.207 Sum_probs=135.9
Q ss_pred hcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 013867 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (435)
Q Consensus 80 G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~ 159 (435)
+.+..+...+...+...... ........++..+...|++.+++..+...... ..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----------------- 90 (291)
T COG0457 37 GELAEALELLEEALELLPNS------DLAGLLLLLALALLKLGRLEEALELLEKALEL---EL----------------- 90 (291)
T ss_pred hhHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHcccHHHHHHHHHHHHhh---hh-----------------
Confidence 46778888888887665432 46778889999999999999999988877432 00
Q ss_pred CCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHH-HHHHhhchHH
Q 013867 160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGE-YLHATRNFLL 238 (435)
Q Consensus 160 g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~-~~~~~G~y~e 238 (435)
.+. .. ............ +.....++........-... + ......... ++...|++++
T Consensus 91 ~~~-~~-~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~ 148 (291)
T COG0457 91 LPN-LA-EALLNLGLLLEA-----------LGKYEEALELLEKALALDPD-------P--DLAEALLALGALYELGDYEE 148 (291)
T ss_pred ccc-hH-HHHHHHHHHHHH-----------HhhHHHHHHHHHHHHcCCCC-------c--chHHHHHHHHHHHHcCCHHH
Confidence 000 00 000011111111 00111222221111111100 0 011111223 6889999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 013867 239 AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVV 318 (435)
Q Consensus 239 Ae~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~ 318 (435)
|...|++++.+. . . ... .......++..+...|++++|...+.+++.+.... ....
T Consensus 149 a~~~~~~~~~~~---~----~-~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~ 204 (291)
T COG0457 149 ALELYEKALELD---P----E-LNE---------LAEALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEA 204 (291)
T ss_pred HHHHHHHHHhcC---C----C-ccc---------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHH
Confidence 999999996531 0 0 000 12345566777999999999999999999987765 6778
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 319 LTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 319 L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
+.+++..|..++++++| ...+.+++..... ....+...+..+...|.+.++....
T Consensus 205 ~~~~~~~~~~~~~~~~a------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (291)
T COG0457 205 LLNLGLLYLKLGKYEEA------LEYYEKALELDPD-------NAEALYNLALLLLELGRYEEALEAL 259 (291)
T ss_pred HHHhhHHHHHcccHHHH------HHHHHHHHhhCcc-------cHHHHhhHHHHHHHcCCHHHHHHHH
Confidence 99999999999987665 7888888887743 2334445556665666677766544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.039 Score=52.85 Aligned_cols=95 Identities=16% Similarity=0.105 Sum_probs=76.7
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 229 ~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
=+...|.|++|..-|++||++.- . .++++..-.+.|-|....++++++.|..-..+|+++
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp---------~------~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel----- 163 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCP---------S------TSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL----- 163 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCc---------c------ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-----
Confidence 34678999999999999999931 1 134444445679999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 309 GSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 309 G~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.|..-.+|...|.+|....+|++| ..=|++.+++-
T Consensus 164 ---~pty~kAl~RRAeayek~ek~eea------leDyKki~E~d 198 (271)
T KOG4234|consen 164 ---NPTYEKALERRAEAYEKMEKYEEA------LEDYKKILESD 198 (271)
T ss_pred ---CchhHHHHHHHHHHHHhhhhHHHH------HHHHHHHHHhC
Confidence 466777788899999999888776 67788877765
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.17 Score=49.53 Aligned_cols=153 Identities=20% Similarity=0.211 Sum_probs=83.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHH
Q 013867 117 LLYESGNYVEAIEKLQKVENFKNSILGVRVA--AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRA 194 (435)
Q Consensus 117 ly~~qGky~eA~~l~~ral~i~e~~L~i~va--ale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a 194 (435)
++.-.++|+||.++|.|+-.+..=.=.-..+ +.-..+-+++..|....+-..+-...+-+.+.. . .++.....
T Consensus 23 lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~---~--~eAv~cL~ 97 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVD---P--EEAVNCLE 97 (288)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccC---h--HHHHHHHH
Confidence 3444569999999999986654211000000 222444556666643322222222233333322 2 26667777
Q ss_pred HHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHH
Q 013867 195 NAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHAT-RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVA 273 (435)
Q Consensus 195 ~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~-G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~ 273 (435)
++|.+. +--|++.-|. +--.++|++|.+- -++++|+..|++|-+-+ +++ . .. +
T Consensus 98 ~aieIy--t~~Grf~~aA--------k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y---k~e--e-s~----------s 151 (288)
T KOG1586|consen 98 KAIEIY--TDMGRFTMAA--------KHHIEIAEIYESDLQDFEKAIAHYEQAAEYY---KGE--E-SV----------S 151 (288)
T ss_pred HHHHHH--HhhhHHHHHH--------hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH---cch--h-hh----------h
Confidence 888763 3445533211 1123578888765 89999999999999995 331 1 11 2
Q ss_pred HH--HHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 274 LA--ATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 274 l~--~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+ ++...|+.-...|+|.+|...|++.
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQV 180 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23 3334466556667777666666654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.4 Score=52.69 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=64.1
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHH-HHHHHHHHcCCHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF-ALGQLEAHMGNFGDAEE 295 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~-nLa~ly~~qG~y~eAe~ 295 (435)
-+++.++.|||.++....-|++|-+.|+|.+.++. -++. ..+.... --..--..--+.+.|..
T Consensus 508 iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk------~p~v----------~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 508 IATPQIIINYAMFLEEHKYFEESFKAYERGISLFK------WPNV----------YDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC------CccH----------HHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 35678899999999999999999999999998841 1111 1122211 11111122346788999
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 296 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 296 l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
||+|||... - |.-+.++.- +|. ++|+= -+|-++|+.|++
T Consensus 572 LFEqaL~~C----p---p~~aKtiyL---lYA---~lEEe------~GLar~amsiye 610 (835)
T KOG2047|consen 572 LFEQALDGC----P---PEHAKTIYL---LYA---KLEEE------HGLARHAMSIYE 610 (835)
T ss_pred HHHHHHhcC----C---HHHHHHHHH---HHH---HHHHH------hhHHHHHHHHHH
Confidence 999999832 2 555555442 233 33332 588888888884
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.45 Score=51.64 Aligned_cols=255 Identities=20% Similarity=0.183 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhh
Q 013867 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA 189 (435)
Q Consensus 110 ~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaea 189 (435)
.+.-...++.++|+|++|+++++...... --+++.++..+.+++.+|+...|+..+..++.. .+.++.=+.-
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I----~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r----NPdn~~Yy~~ 77 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQI----LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR----NPDNYDYYRG 77 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHHHHH
Confidence 45567789999999999999997753321 113445777888899999998887665544333 2222210111
Q ss_pred HHHH-----------HHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCC
Q 013867 190 VNSR-----------ANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSD 258 (435)
Q Consensus 190 l~~~-----------a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~ 258 (435)
+... ...+..+...+...+|.+. +.-.+..-+..-.+|.+...-|-+-. + .+|
T Consensus 78 L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~---------~~~rl~L~~~~g~~F~~~~~~yl~~~-l---~Kg--- 141 (517)
T PF12569_consen 78 LEEALGLQLQLSDEDVEKLLELYDELAEKYPRSD---------APRRLPLDFLEGDEFKERLDEYLRPQ-L---RKG--- 141 (517)
T ss_pred HHHHHhhhcccccccHHHHHHHHHHHHHhCcccc---------chhHhhcccCCHHHHHHHHHHHHHHH-H---hcC---
Confidence 1000 0111122233333333211 00001000011123444333333322 1 233
Q ss_pred CCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--hC------CCChhH-HHHHHHHHHHHHHh
Q 013867 259 MNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL--FG------SHHPKV-GVVLTCLALMFRNK 329 (435)
Q Consensus 259 ~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~--lG------~~HP~v-a~~L~nLA~ly~~q 329 (435)
. | ....||-.+|.+..+.+--+.+.+.-+.-.+.. +. .+-|.+ .-++.-||..|...
T Consensus 142 --v-------P-----slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 142 --V-------P-----SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred --C-------c-----hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 1 1 234688889997777655555555544433221 21 244554 57789999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh--hhhhhHHHHHHH--HHHHHhc
Q 013867 330 AMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ--QNRKDEGERMKR--WAEAAWR 405 (435)
Q Consensus 330 G~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~--~~r~~eae~~~~--~a~~~~~ 405 (435)
|++++| ..+..+||+.- |....-....|-++...|++.+|.... .+..+-+.+-.+ .+.-+-+
T Consensus 208 g~~~~A------l~~Id~aI~ht-------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 208 GDYEKA------LEYIDKAIEHT-------PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred CCHHHH------HHHHHHHHhcC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 998776 67777777653 332333446788899999999998875 222333555443 5566668
Q ss_pred ccchhHHHHh
Q 013867 406 NRRVSLAEAL 415 (435)
Q Consensus 406 ~~r~~l~~~l 415 (435)
+++...|+.+
T Consensus 275 a~~~e~A~~~ 284 (517)
T PF12569_consen 275 AGRIEEAEKT 284 (517)
T ss_pred CCCHHHHHHH
Confidence 8887777654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.048 Score=53.95 Aligned_cols=102 Identities=16% Similarity=0.185 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
..+.|.=+...|+|++|+.-|+.=+.-+ +.... . -.+.+=||+++..||+|++|...|.++..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y------P~s~~-~----------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY------PNSTY-T----------PNAYYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCcc-c----------chhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 3444544567899999999998877552 22222 1 14678999999999999999999999988
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
-+ |+||..-.+|.-||......|+.++| -..|++.+.-+
T Consensus 207 ~~-----P~s~KApdallKlg~~~~~l~~~d~A------~atl~qv~k~Y 245 (262)
T COG1729 207 DY-----PKSPKAPDALLKLGVSLGRLGNTDEA------CATLQQVIKRY 245 (262)
T ss_pred hC-----CCCCCChHHHHHHHHHHHHhcCHHHH------HHHHHHHHHHC
Confidence 43 78999999999999999999998877 56677776655
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.18 Score=48.04 Aligned_cols=97 Identities=20% Similarity=0.185 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHH--HHHHHHHHHcCCHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT--FALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l--~nLa~ly~~qG~y~eAe~l~~r 299 (435)
+++.+|..+...|+|++|+.-.+.+|.- .+. + .+.++ .+||.|...+|+||+|..++..
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~D--------------e--~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQ---TKD--------------E--NLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc---chh--------------H--HHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 3466788889999999999999999865 221 0 22333 4799999999999999887764
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 300 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 300 AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
- .+|--++..-.-.|.++-.+|+-++| ..-|++|+++.
T Consensus 152 ~---------~~~~w~~~~~elrGDill~kg~k~~A------r~ay~kAl~~~ 189 (207)
T COG2976 152 I---------KEESWAAIVAELRGDILLAKGDKQEA------RAAYEKALESD 189 (207)
T ss_pred c---------ccccHHHHHHHHhhhHHHHcCchHHH------HHHHHHHHHcc
Confidence 3 23444666677789999999998776 78899999987
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.042 Score=52.80 Aligned_cols=112 Identities=20% Similarity=0.202 Sum_probs=81.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc-CC-CCC----CC
Q 013867 287 MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-AP-PLE----SE 360 (435)
Q Consensus 287 qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k-~~-~~~----hp 360 (435)
--.+++|...|.-||-.+ +..+.+|-..|...-.+|.+|+.+|+.++. ..++++|++.++ +. ..+ .-
T Consensus 90 ~Rt~~~ai~~YkLAll~~-~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E------~~fl~~Al~~y~~a~~~e~~~~~~~ 162 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCA-QIKKEKPSKKAGLCLRLAWLYRDLGDEENE------KRFLRKALEFYEEAYENEDFPIEGM 162 (214)
T ss_pred CCCHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHhhccCCHHHH------HHHHHHHHHHHHHHHHhCcCCCCCc
Confidence 356889999999999884 567788889999999999999999996554 566777777773 32 111 22
Q ss_pred chhhhhccHHHHHHHhcCHHHHhhHhhhhhhH-----HHHHHHHHHHHhc
Q 013867 361 GVETKVDRTDIVALARGGYAEALSVQQNRKDE-----GERMKRWAEAAWR 405 (435)
Q Consensus 361 ~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e-----ae~~~~~a~~~~~ 405 (435)
+-.+.+.-+|.++..-|+|+||...+.+-..- -.++.+.|...|-
T Consensus 163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~ 212 (214)
T PF09986_consen 163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ 212 (214)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 33556667899999999999998876332222 2367778888773
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.031 Score=46.40 Aligned_cols=83 Identities=13% Similarity=0.224 Sum_probs=62.4
Q ss_pred HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 232 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 232 ~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
..|+|.+|.+...+.++....... ... ......++.|+|.++...|++++|...+++|+.|.++. .|
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~---~~~--------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D 76 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNN---SSS--------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GD 76 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhccc---chh--------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CC
Confidence 579999999999999999543221 100 00122367899999999999999999999999999875 45
Q ss_pred ChhHHHHHHHHHHHHH
Q 013867 312 HPKVGVVLTCLALMFR 327 (435)
Q Consensus 312 HP~va~~L~nLA~ly~ 327 (435)
+.-++.++..++.+..
T Consensus 77 ~~~l~~al~~~~~l~~ 92 (94)
T PF12862_consen 77 RRCLAYALSWLANLLK 92 (94)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6667777777776654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.24 E-value=2.4 Score=47.00 Aligned_cols=160 Identities=18% Similarity=0.168 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
+..+..-.+.+.+.+|+.++|..|.+++|.++- ++- --..-||++|..+++.+.|.+-|.
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp---------~f~-----------Kl~lmlGQi~e~~~~ie~aR~aY~ 709 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFP---------DFH-----------KLWLMLGQIEEQMENIEMAREAYL 709 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC---------chH-----------HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345666677888899999999999999998841 110 123578999999999999999997
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHH--HHHh
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIV--ALAR 376 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~--~~a~ 376 (435)
+-+. .-|..-...-.|+.+=..+|..-+| ...+.|+.- -.|+.+. -+++.+ -+..
T Consensus 710 ~G~k--------~cP~~ipLWllLakleEk~~~~~rA------R~ildrarl----kNPk~~~-----lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 710 QGTK--------KCPNSIPLWLLLAKLEEKDGQLVRA------RSILDRARL----KNPKNAL-----LWLESIRMELRA 766 (913)
T ss_pred hccc--------cCCCCchHHHHHHHHHHHhcchhhH------HHHHHHHHh----cCCCcch-----hHHHHHHHHHHc
Confidence 7553 3466666666677777777653222 333443321 1333332 123322 2345
Q ss_pred cCHHHHhhHhhhhhhHH-HHHHHHHHHHh----cccchhHHHHhcccCCC
Q 013867 377 GGYAEALSVQQNRKDEG-ERMKRWAEAAW----RNRRVSLAEALNFSEPS 421 (435)
Q Consensus 377 G~yaeal~~~~~r~~ea-e~~~~~a~~~~----~~~r~~l~~~l~~~~~~ 421 (435)
|..++|..+..+...|- ..=.-|++++| .|++..--+||.+.++.
T Consensus 767 gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~d 816 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHD 816 (913)
T ss_pred CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCC
Confidence 66666655543322221 11113999999 47777788999988887
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0045 Score=42.00 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHH
Q 013867 275 AATFALGQLEAHMGNFGDAEE 295 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~ 295 (435)
.+++|||.+|..+|++++|++
T Consensus 14 ~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 14 EAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHHHHHHHHHCcCHHhhcC
Confidence 578999999999999999973
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.012 Score=38.72 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
.+..+|.+|..+|+|++|...|++++.+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 46799999999999999999999999874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.012 Score=41.76 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV 317 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~ 317 (435)
.+..||.+|..+|++++|+.+|+++++. .|++|.+-.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-----~P~~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL-----DPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCHHHHH
Confidence 4678999999999999999999999984 456655433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.053 Score=53.65 Aligned_cols=101 Identities=12% Similarity=0.066 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP 356 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~ 356 (435)
++|.|.=+...|+|++|+.-|..-+.. .|+.+.++.++..||.+|..||+|++| ...|.++..-+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~A------a~~f~~~~k~~---- 208 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDA------AYIFARVVKDY---- 208 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHH------HHHHHHHHHhC----
Confidence 677888888899999999999988875 589999999999999999999998876 77788777644
Q ss_pred CCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH
Q 013867 357 LESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE 392 (435)
Q Consensus 357 ~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e 392 (435)
|+||-...+|-=++.+....|+-++|+.....-.++
T Consensus 209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 455544446666788888888888888776444433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0045 Score=42.03 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=28.2
Q ss_pred HHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 013867 89 LEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIE 129 (435)
Q Consensus 89 ~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~ 129 (435)
|++++++ +|+-+.++++||.+|..+|++++|++
T Consensus 2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 6777744 47889999999999999999999973
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.089 Score=50.59 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=80.3
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA-TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~-l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
.-.+++|..-|.-||-..+-... ++ ...+. ...+|=+|..+|+-++...++++|+..+++.+-.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~---~~-----------s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e 155 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKE---KP-----------SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE 155 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC---CH-----------HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 45789999999999988643221 11 12343 35899999999999999999999999999998766
Q ss_pred Ch-----hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 312 HP-----KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 312 HP-----~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
.. +-...+.-+|.++++-|++++| ...|.|.+.-.+.
T Consensus 156 ~~~~~~~~~~~l~YLigeL~rrlg~~~eA------~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 156 DFPIEGMDEATLLYLIGELNRRLGNYDEA------KRWFSRVIGSKKA 197 (214)
T ss_pred cCCCCCchHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHcCCCC
Confidence 55 4478899999999999998877 7888888776643
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.017 Score=38.06 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 108 A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
|.++..+|.+|.++|++++|++.|++++++.+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 46789999999999999999999999987654
|
... |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.64 Score=51.09 Aligned_cols=223 Identities=19% Similarity=0.148 Sum_probs=133.7
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
.+.|...+...++.|+ .+|.-+.|+--.|-.+...|+-++|-++-+.++..
T Consensus 20 ~kQYkkgLK~~~~iL~--------k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------------------- 70 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK--------KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------------------- 70 (700)
T ss_pred HHHHHhHHHHHHHHHH--------hCCccchhHHhccchhhcccchHHHHHHHHHHhcc---------------------
Confidence 3566676766666665 33444555666788899999999998766654221
Q ss_pred cCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHH
Q 013867 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLL 238 (435)
Q Consensus 159 ~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~e 238 (435)
| ..+.++-.++.++....+ +|. +++.++..|+++ . ++...+.-.++.+-..+|+|+-
T Consensus 71 ---d-~~S~vCwHv~gl~~R~dK-~Y~--eaiKcy~nAl~~-----~-----------~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 71 ---D-LKSHVCWHVLGLLQRSDK-KYD--EAIKCYRNALKI-----E-----------KDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred ---C-cccchhHHHHHHHHhhhh-hHH--HHHHHHHHHHhc-----C-----------CCcHHHHHHHHHHHHHHHhhhh
Confidence 1 122333344444443332 244 556666666653 1 2333455555555566788877
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 013867 239 AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVV 318 (435)
Q Consensus 239 Ae~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~ 318 (435)
...--.+-|+.. . + ..++...+|..+.-.|+|..|.++.+.--.-.+ .-|+.-..
T Consensus 128 ~~~tr~~LLql~---~--------~---------~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-----~~~s~~~~ 182 (700)
T KOG1156|consen 128 YLETRNQLLQLR---P--------S---------QRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-----TSPSKEDY 182 (700)
T ss_pred HHHHHHHHHHhh---h--------h---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCCCHHHH
Confidence 666666666552 1 1 224567788888888999888887766554444 45666666
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 319 LTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 319 L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
=.....+|+.|-..+. +.++.|+++....-+.--|-.....-.+.++..+|+++||..++
T Consensus 183 e~se~~Ly~n~i~~E~--------g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 183 EHSELLLYQNQILIEA--------GSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHHHHHHHHc--------ccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 6777888888755432 44888888874221111121223334667778888999887765
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.79 Score=40.61 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=77.5
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF--ALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~--nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
-++--..-|-|++|..-|++|+++. ..-+.... -||---.++| .|+..+...|+|+|+..--.+||--
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~s---rtiP~eEa-------FDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVS---RTIPAEEA-------FDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHH---TTS-TTS----------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHh---ccCChHhh-------cccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 3444445789999999999999993 32111111 1222334444 7999999999999999999999987
Q ss_pred HHHhhCCCChhHH----HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 304 TEELFGSHHPKVG----VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 304 ~e~~lG~~HP~va----~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.+ -|+=|-+.+ .+..+-|..+...|+.++| .+-|+.+-++.
T Consensus 85 FNR-RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA------~~~fr~agEMi 130 (144)
T PF12968_consen 85 FNR-RGELHQDEGKLWIAAVFSRAVALEGLGRKEEA------LKEFRMAGEMI 130 (144)
T ss_dssp HHH-H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHH------HHHHHHHHHHH
T ss_pred Hhh-ccccccccchhHHHHHHHHHHHHHhcCChHHH------HHHHHHHHHHH
Confidence 765 588888754 4567889999999998876 88999999987
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.09 Score=49.36 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 013867 274 LAATFALGQLEAHMGNF---GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 350 (435)
Q Consensus 274 l~~l~nLa~ly~~qG~y---~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~ 350 (435)
..+|+|.|..+..+.++ .|+..+|+.|++.+|+.+-- +|+-..++.|||..|..+|....- -.+|+.+|++|.+
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGnA~ts~A~l~~d--~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGNAYTSLAFLTPD--TAEAEEYFEKATE 101 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHH
Confidence 35788999988888777 56889999999999998853 688888999999999999986432 3577888888888
Q ss_pred Hhc
Q 013867 351 FLK 353 (435)
Q Consensus 351 I~k 353 (435)
-++
T Consensus 102 ~Fq 104 (186)
T PF06552_consen 102 YFQ 104 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 884
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.069 Score=55.96 Aligned_cols=98 Identities=17% Similarity=0.182 Sum_probs=68.5
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
-...|+++..|+++-+.. ++..+|+.++.++|. +.|.-+..|.-.+..+.++|+|+.|+++.+++
T Consensus 196 ~~~~pev~~~LA~v~l~~-------~~E~~AI~ll~~aL~--------~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~a 260 (395)
T PF09295_consen 196 RERDPEVAVLLARVYLLM-------NEEVEAIRLLNEALK--------ENPQDSELLNLQAEFLLSKKKYELALEIAKKA 260 (395)
T ss_pred HhcCCcHHHHHHHHHHhc-------CcHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344466665555544432 245677777777772 23444777888888899999999999999998
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADK 171 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~ 171 (435)
..+..+.+ .+|..|+..|..+|+++.|+...+.
T Consensus 261 v~lsP~~f----~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 261 VELSPSEF----ETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHhCchhH----HHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 87766554 3678888899999988877755443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.26 Score=48.82 Aligned_cols=128 Identities=19% Similarity=0.164 Sum_probs=86.6
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHH-HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH--
Q 013867 231 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-ATFALGQLEAHMG-NFGDAEEILTRTLTKTEE-- 306 (435)
Q Consensus 231 ~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~-~l~nLa~ly~~qG-~y~eAe~l~~rAL~I~e~-- 306 (435)
..+|+++.|+.+|.|+-.... . .++.. ...++ .+.|.|.-....+ +|++|..+++||++|.++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~--~--~~~~~---------~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~ 70 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN--S--LDPDM---------AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPG 70 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh--c--CCcHH---------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhh
Confidence 579999999999999988832 1 11111 11334 4569999999999 999999999999999877
Q ss_pred hhCCCChhH----HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH---hcCCCCCCCchhhhhccHHHHHHHhcCH
Q 013867 307 LFGSHHPKV----GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF---LKAPPLESEGVETKVDRTDIVALARGGY 379 (435)
Q Consensus 307 ~lG~~HP~v----a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I---~k~~~~~hp~~a~~l~nla~~~~a~G~y 379 (435)
-.+..||+. ..+|..|+..|-..+.++. +.+|+.+ .+.-.++||.+. +-.+.++.. .+++
T Consensus 71 ~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~----------~~ka~~~l~~l~~e~~~~~~~~--~L~l~il~~-~~~~ 137 (278)
T PF08631_consen 71 KMDKLSPDGSELRLSILRLLANAYLEWDTYES----------VEKALNALRLLESEYGNKPEVF--LLKLEILLK-SFDE 137 (278)
T ss_pred hccccCCcHHHHHHHHHHHHHHHHHcCCChHH----------HHHHHHHHHHHHHhCCCCcHHH--HHHHHHHhc-cCCh
Confidence 356788886 7889999999988877542 4444444 433356666533 112333333 3555
Q ss_pred HHHhh
Q 013867 380 AEALS 384 (435)
Q Consensus 380 aeal~ 384 (435)
+++..
T Consensus 138 ~~~~~ 142 (278)
T PF08631_consen 138 EEYEE 142 (278)
T ss_pred hHHHH
Confidence 54444
|
It is also involved in sporulation []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.57 E-value=3.5 Score=42.73 Aligned_cols=222 Identities=12% Similarity=0.060 Sum_probs=128.7
Q ss_pred CChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 57 ~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
..|..+..-..++-.+- ..|.|.+|+..|-.+++. +|.-=.+++..|++|...|+-.-|++=+.+++.
T Consensus 33 ~~~advekhlElGk~ll----a~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELL----ARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred CCHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 34455555566665552 467899999999999843 467778889999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhch--------hhHHHHHHHHHHHHHHhcCCC
Q 013867 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY--------GAVNSRANAVKGLVELAHGNL 208 (435)
Q Consensus 137 i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ea--------eal~~~a~Ai~~~~~~lgg~h 208 (435)
+...-.+.|. .-+.+.+.+|+.+.|..-.+..++---.++ .-.++ +.+..+.+ .+-..-+|++
T Consensus 101 lKpDF~~ARi----QRg~vllK~Gele~A~~DF~~vl~~~~s~~--~~~eaqskl~~~~e~~~l~~q---l~s~~~~GD~ 171 (504)
T KOG0624|consen 101 LKPDFMAARI----QRGVVLLKQGELEQAEADFDQVLQHEPSNG--LVLEAQSKLALIQEHWVLVQQ---LKSASGSGDC 171 (504)
T ss_pred cCccHHHHHH----HhchhhhhcccHHHHHHHHHHHHhcCCCcc--hhHHHHHHHHhHHHHHHHHHH---HHHHhcCCch
Confidence 7655544432 223456678888776654443322111111 00011 11111111 1112345665
Q ss_pred ccccccc----ccchhHH--HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHH
Q 013867 209 ESGLQEE----EGCTGSA--ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQ 282 (435)
Q Consensus 209 ~~a~~~~----~~~~~~~--a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ 282 (435)
..+.+.. +.+.-++ -...+.+|-..|+-..|+.=.+.|-.. ..+ ..-.+..+.+
T Consensus 172 ~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL-------------s~D-------nTe~~ykis~ 231 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL-------------SQD-------NTEGHYKISQ 231 (504)
T ss_pred hhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-------------ccc-------chHHHHHHHH
Confidence 5432211 1111111 112355677777777777666555444 111 1134678888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 013867 283 LEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLAL 324 (435)
Q Consensus 283 ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ 324 (435)
||+..|+..++..-.+.+|. |.|+|-.-=..+-.|--
T Consensus 232 L~Y~vgd~~~sL~~iRECLK-----ldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 232 LLYTVGDAENSLKEIRECLK-----LDPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHc-----cCcchhhHHHHHHHHHH
Confidence 88999988888877777775 56777654444444433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.6 Score=43.28 Aligned_cols=222 Identities=13% Similarity=0.053 Sum_probs=133.7
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
.|+-..-|..|-.=|..+ |- .-+|++|-..++++.+-.+.- .+--+.|..+-..+-+..+.-++.|+..+|++|
T Consensus 24 kad~dgaas~yekAAvaf-Rn---Ak~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKA 97 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAF-RN---AKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKA 97 (308)
T ss_pred CCCchhhHHHHHHHHHHH-Hh---hccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444445555555555555 32 235777777777766555443 222346677777777777777777777777777
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccc
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQE 214 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~ 214 (435)
.. +|.+-|..++|....++.+.++++..| ++| +..+..++..+. -+++...+.
T Consensus 98 s~------------------lY~E~GspdtAAmaleKAak~lenv~P---d~A--lqlYqralavve--~~dr~~ma~-- 150 (308)
T KOG1585|consen 98 SE------------------LYVECGSPDTAAMALEKAAKALENVKP---DDA--LQLYQRALAVVE--EDDRDQMAF-- 150 (308)
T ss_pred HH------------------HHHHhCCcchHHHHHHHHHHHhhcCCH---HHH--HHHHHHHHHHHh--ccchHHHHH--
Confidence 43 355668888888888888888887663 334 444444444321 112110000
Q ss_pred cccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHH
Q 013867 215 EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE 294 (435)
Q Consensus 215 ~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe 294 (435)
......+.+|-...+|+||-..++|-.-+..+... ++. +- ..+..+=.||....+|..|+
T Consensus 151 ------el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~------y~~----~~----k~~va~ilv~L~~~Dyv~ae 210 (308)
T KOG1585|consen 151 ------ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA------YNS----QC----KAYVAAILVYLYAHDYVQAE 210 (308)
T ss_pred ------HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh------ccc----HH----HHHHHHHHHHhhHHHHHHHH
Confidence 11222345677888999999999887777544332 110 00 11223334666677999999
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhh
Q 013867 295 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH 334 (435)
Q Consensus 295 ~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~ 334 (435)
..|+.+-+| -+-.-|+=..++.||=..|.. |+.|+
T Consensus 211 kc~r~~~qi----p~f~~sed~r~lenLL~ayd~-gD~E~ 245 (308)
T KOG1585|consen 211 KCYRDCSQI----PAFLKSEDSRSLENLLTAYDE-GDIEE 245 (308)
T ss_pred HHhcchhcC----ccccChHHHHHHHHHHHHhcc-CCHHH
Confidence 999988776 334556677788888888865 45444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.028 Score=37.06 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
++..+|.+|..+|++++|...|++++++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467899999999999999999999999864
|
... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.068 Score=54.79 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=47.6
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
|.-|..||+|+||+.+|-++++.. .++.+ ...|-|..|.++.+|..||.-.+.|++.-.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-------P~NpV-------------~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~ 162 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-------PHNPV-------------YHINRALAYLKQKSFAQAEEDCEAAIALDK 162 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-------CCCcc-------------chhhHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 556899999999999999999881 11111 135889999999999999999999998754
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.48 E-value=2.2 Score=44.55 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=56.8
Q ss_pred ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013867 216 EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE 295 (435)
Q Consensus 216 ~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~ 295 (435)
||+.+.....+|.+|...+.|.+|...++.|+.- + .. ....+-||-++..+|+-.+|+.
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~-----~------~s----------~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL-----R------PS----------ASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc-----C------CC----------hhhHHHHHHHHHHcCChHHHHH
Confidence 5666677788999999999999999999988866 1 11 1234679999999999999999
Q ss_pred HHHHHHHHHHH
Q 013867 296 ILTRTLTKTEE 306 (435)
Q Consensus 296 l~~rAL~I~e~ 306 (435)
.++.+|..+..
T Consensus 383 ~r~e~L~~~~~ 393 (400)
T COG3071 383 VRREALLLTRQ 393 (400)
T ss_pred HHHHHHHHhcC
Confidence 99999966544
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.48 E-value=4.5 Score=43.50 Aligned_cols=202 Identities=12% Similarity=0.137 Sum_probs=128.5
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCC--CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQL--AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~--~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~ 156 (435)
.|+|.+|++-..+...-..+.=++ -.-..+....-+|.--.+-|-|+.|+-.|..|.+..++. .+..-.-=|++..|
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-DLQAFCNLNLAISY 414 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-HHHHHHHHhHHHHH
Confidence 578999998887777655444221 112366777777777788899999999999887665433 11111111344444
Q ss_pred HhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccc-hhHHHHHHHHHHHHhhc
Q 013867 157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGC-TGSAALSYGEYLHATRN 235 (435)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~-~~~~a~~la~~~~~~G~ 235 (435)
+.++.. +.++ ...+.++..+... ....+ -+++..-+|-+...|++
T Consensus 415 L~~~~~-------------------------ed~y-------~~ld~i~p~nt~s--~ssq~l~a~~~~v~glfaf~qn~ 460 (629)
T KOG2300|consen 415 LRIGDA-------------------------EDLY-------KALDLIGPLNTNS--LSSQRLEASILYVYGLFAFKQND 460 (629)
T ss_pred HHhccH-------------------------HHHH-------HHHHhcCCCCCCc--chHHHHHHHHHHHHHHHHHHhcc
Confidence 444322 1111 1112233332110 00000 12344446777789999
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH
Q 013867 236 FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 315 (435)
Q Consensus 236 y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v 315 (435)
|.||..+..+.|.+. +..+ ..-++.-++.-||.+....|+-.|++.+.+-+++...|. +|||-.
T Consensus 461 lnEaK~~l~e~Lkma-naed-------------~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vq 524 (629)
T KOG2300|consen 461 LNEAKRFLRETLKMA-NAED-------------LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQ 524 (629)
T ss_pred HHHHHHHHHHHHhhc-chhh-------------HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHH
Confidence 999999999999993 1111 111222356678999999999999999999999998876 688888
Q ss_pred HHHHHHHHHHHHHhhh
Q 013867 316 GVVLTCLALMFRNKAM 331 (435)
Q Consensus 316 a~~L~nLA~ly~~qG~ 331 (435)
.-+..-+-.+|..-|.
T Consensus 525 Lws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 525 LWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 7777777788887776
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.48 E-value=3 Score=41.34 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=71.0
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhhh----------HHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESG-NYVEAIEKLQKVENFKNSI----------LGVRVA 147 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qG-ky~eA~~l~~ral~i~e~~----------L~i~va 147 (435)
+|+++.|+.+|.|+=..........-..++..++|.|.-..+++ +|++|...+++|.++.+.. ...+..
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 68999999999999766643333344678889999999999999 9999999999999996441 123455
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcC
Q 013867 148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK 180 (435)
Q Consensus 148 ale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~ 180 (435)
++-.|+..|++.+.++ ...-+.+.++.++...
T Consensus 86 iL~~La~~~l~~~~~~-~~~ka~~~l~~l~~e~ 117 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYE-SVEKALNALRLLESEY 117 (278)
T ss_pred HHHHHHHHHHcCCChH-HHHHHHHHHHHHHHhC
Confidence 6667777777776553 2222334444454433
|
It is also involved in sporulation []. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.31 Score=47.75 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHh-hhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhh
Q 013867 288 GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK-AMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKV 366 (435)
Q Consensus 288 G~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~q-G~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l 366 (435)
++-.+|...+++|++|+-..--= ..-|.-...+|.+|..- -++++ |...|++|-+.++- .+....+..-
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf--~~aAk~~~~iaEiyEsdl~d~ek------aI~~YE~Aae~yk~--ees~ssANKC 156 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRF--TMAAKHHIEIAEIYESDLQDFEK------AIAHYEQAAEYYKG--EESVSSANKC 156 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHH--HHHHhhhhhHHHHHhhhHHHHHH------HHHHHHHHHHHHcc--hhhhhhHHHH
Confidence 36666666666666666432110 01222334556666543 44444 48888888888862 2221111111
Q ss_pred ccHH--HHHHHhcCHHHHhhHh--hhhhhHHHHHHHHHHHHh----------cccchhHHHHhcccCCCCCCceeeeccc
Q 013867 367 DRTD--IVALARGGYAEALSVQ--QNRKDEGERMKRWAEAAW----------RNRRVSLAEALNFSEPSNKPLVIDARTS 432 (435)
Q Consensus 367 ~nla--~~~~a~G~yaeal~~~--~~r~~eae~~~~~a~~~~----------~~~r~~l~~~l~~~~~~~~~~~~~~r~~ 432 (435)
++- ...-..|+|.+|..++ ..|.+-..++.+|+.+=+ +-.-++-..||+.-+.. .|...|+|=|
T Consensus 157 -~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~-dP~F~dsREc 234 (288)
T KOG1586|consen 157 -LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL-DPAFTDSREC 234 (288)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc-CCcccccHHH
Confidence 111 1122457899998886 344555677777766533 34445666677766555 6778888865
Q ss_pred c
Q 013867 433 R 433 (435)
Q Consensus 433 r 433 (435)
.
T Consensus 235 k 235 (288)
T KOG1586|consen 235 K 235 (288)
T ss_pred H
Confidence 4
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=1.1 Score=44.21 Aligned_cols=184 Identities=14% Similarity=0.172 Sum_probs=107.5
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
..|+|++|+..|+...+-. +-.|..=+++..++-.+++.|+|++|+....+=+.....+-.+.
T Consensus 46 ~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d------------ 108 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD------------ 108 (254)
T ss_pred hcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh------------
Confidence 3689999999999987433 44577888999999999999999999988877654443332221
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccc------c---ccccchhHHHHHHHH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGL------Q---EEEGCTGSAALSYGE 228 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~------~---~~~~~~~~~a~~la~ 228 (435)
-.++-.++..+..-. ....|..+ -..|+..+-+.+ .++|... . ...+.+..-=...|.
T Consensus 109 --------Y~~YlkgLs~~~~i~-~~~rDq~~---~~~A~~~f~~~i-~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iar 175 (254)
T COG4105 109 --------YAYYLKGLSYFFQID-DVTRDQSA---ARAAFAAFKELV-QRYPNSRYAPDAKARIVKLNDALAGHEMAIAR 175 (254)
T ss_pred --------HHHHHHHHHHhccCC-ccccCHHH---HHHHHHHHHHHH-HHCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222111100 00111111 222222221111 2333211 0 000000011123577
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 229 ~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
+|...|.|--|.--+++.++-+..+. . +--++--|...|..+|-.++|.. ..+++
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~------~-----------~~eaL~~l~eaY~~lgl~~~a~~--------~~~vl 230 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTS------A-----------VREALARLEEAYYALGLTDEAKK--------TAKVL 230 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhcccccc------c-----------hHHHHHHHHHHHHHhCChHHHHH--------HHHHH
Confidence 89999999999999999887742211 1 11367788899999999999975 46778
Q ss_pred CCCChhHH
Q 013867 309 GSHHPKVG 316 (435)
Q Consensus 309 G~~HP~va 316 (435)
|.+-|+.-
T Consensus 231 ~~N~p~s~ 238 (254)
T COG4105 231 GANYPDSQ 238 (254)
T ss_pred HhcCCCCc
Confidence 87777654
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.082 Score=43.84 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=50.9
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAE-SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~H-p~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~ 140 (435)
.|+|.+|++-+.+.+..........+ -.....+.++|.++...|++++|+..++.++.+...
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999998877655442 235666889999999999999999999999776543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.36 Score=43.69 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
+.+-|.-....|+|++|+..++....-+ ..|.- .-.+-.+|+-+|..+|+|++|..-|+|-+.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ry----------P~g~y-------a~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRY----------PFGEY-------AEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC----------CCCcc-------cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3334555567899999999888765431 22210 124667999999999999999999999887
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhh
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAM 331 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~ 331 (435)
+=|.||.|--++.-.|..+..|..
T Consensus 76 -----LhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 76 -----LHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred -----hCCCCCCccHHHHHHHHHHHHHhh
Confidence 469999999999999999988864
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.76 Score=50.53 Aligned_cols=74 Identities=11% Similarity=0.076 Sum_probs=56.9
Q ss_pred CCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 56 ~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
|+|+ .++.-.|+.+. +.|+-++|...-..++.+..+ --...+-+|.+++.--+|++|+..|+.|+
T Consensus 38 ~eHg---eslAmkGL~L~----~lg~~~ea~~~vr~glr~d~~--------S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl 102 (700)
T KOG1156|consen 38 PEHG---ESLAMKGLTLN----CLGKKEEAYELVRLGLRNDLK--------SHVCWHVLGLLQRSDKKYDEAIKCYRNAL 102 (700)
T ss_pred Cccc---hhHHhccchhh----cccchHHHHHHHHHHhccCcc--------cchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4554 45556677763 678999999999999975543 23456789999999999999999999999
Q ss_pred HhhhhhHHH
Q 013867 136 NFKNSILGV 144 (435)
Q Consensus 136 ~i~e~~L~i 144 (435)
.+-...+.|
T Consensus 103 ~~~~dN~qi 111 (700)
T KOG1156|consen 103 KIEKDNLQI 111 (700)
T ss_pred hcCCCcHHH
Confidence 887666555
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.12 E-value=3.3 Score=45.86 Aligned_cols=148 Identities=16% Similarity=0.209 Sum_probs=100.7
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
...+..-..+|.+|...|+.+.|-.+|++|+.. . ..+ -++ .....++.|..-....+|+.|..+
T Consensus 384 Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V---~-------y~~-----v~d-La~vw~~waemElrh~~~~~Al~l 447 (835)
T KOG2047|consen 384 GSPGTLWVEFAKLYENNGDLDDARVIFEKATKV---P-------YKT-----VED-LAEVWCAWAEMELRHENFEAALKL 447 (835)
T ss_pred CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC---C-------ccc-----hHH-HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 345567788999999999999999999999987 1 111 111 123568999999999999999999
Q ss_pred HHHHHHHH---H-HhhCCCChhHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHH
Q 013867 297 LTRTLTKT---E-ELFGSHHPKVGVVLTCLALMFRNKAMQEHSS-ALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDI 371 (435)
Q Consensus 297 ~~rAL~I~---e-~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~-~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~ 371 (435)
.++|...= + ..|...||--+. +.+--.++..-.+++++. .+..-...|.|.++++=+ .| .++-|-|.
T Consensus 448 m~~A~~vP~~~~~~~yd~~~pvQ~r-lhrSlkiWs~y~DleEs~gtfestk~vYdriidLria----TP---qii~NyAm 519 (835)
T KOG2047|consen 448 MRRATHVPTNPELEYYDNSEPVQAR-LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA----TP---QIIINYAM 519 (835)
T ss_pred HHhhhcCCCchhhhhhcCCCcHHHH-HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC----CH---HHHHHHHH
Confidence 99999762 2 456666764444 444334555555666652 122224567777777632 23 35567888
Q ss_pred HHHHhcCHHHHhhHhhh
Q 013867 372 VALARGGYAEALSVQQN 388 (435)
Q Consensus 372 ~~~a~G~yaeal~~~~~ 388 (435)
.+...-.++++..++++
T Consensus 520 fLEeh~yfeesFk~YEr 536 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYER 536 (835)
T ss_pred HHHhhHHHHHHHHHHHc
Confidence 88777778888777754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.4 Score=48.87 Aligned_cols=206 Identities=17% Similarity=0.071 Sum_probs=120.0
Q ss_pred cHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHH------HHHHHHH--
Q 013867 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR------VAAMEAL-- 152 (435)
Q Consensus 81 ~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~------vaale~L-- 152 (435)
.|++|..+|.|+.++. -|..++..=+.+.+.+|+.++|+.+++.++...+-...+. ....+++
T Consensus 633 e~eraR~llakar~~s---------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 633 ELERARDLLAKARSIS---------GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred cHHHHHHHHHHHhccC---------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHH
Confidence 6999999999998754 2677888888899999999999999999987665432221 1111111
Q ss_pred -HHHHHhcC----CCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHH
Q 013867 153 -AGLYLQLG----QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYG 227 (435)
Q Consensus 153 -~g~~~~~g----~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la 227 (435)
...| .+| |.. ..+.-.+..+-++++. ..++.+|-....+-. |. +..+-++
T Consensus 704 aR~aY-~~G~k~cP~~--ipLWllLakleEk~~~---------~~rAR~ildrarlkN-----------Pk--~~~lwle 758 (913)
T KOG0495|consen 704 AREAY-LQGTKKCPNS--IPLWLLLAKLEEKDGQ---------LVRARSILDRARLKN-----------PK--NALLWLE 758 (913)
T ss_pred HHHHH-HhccccCCCC--chHHHHHHHHHHHhcc---------hhhHHHHHHHHHhcC-----------CC--cchhHHH
Confidence 0011 111 111 1222222333333331 134444433221111 11 1222233
Q ss_pred H--HHHHhhchHHHHHHHHHHHHHHHH--------hcccCCCC--C-----cccccccchHHHHHHHHHHHHHHHHcCCH
Q 013867 228 E--YLHATRNFLLAKKFYQKVIEVLAE--------QKDFSDMN--T-----LGSCNMALEEVALAATFALGQLEAHMGNF 290 (435)
Q Consensus 228 ~--~~~~~G~y~eAe~ly~rAL~I~~~--------~~~~~~~~--~-----l~~~~~~~~~~~l~~l~nLa~ly~~qG~y 290 (435)
. +-..-|+-++|+.+.-|||+-+.. ..-++.+. . +--|.+.| | .++..|.++....+|
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp-h----Vllaia~lfw~e~k~ 833 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP-H----VLLAIAKLFWSEKKI 833 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCc-h----hHHHHHHHHHHHHHH
Confidence 2 334679999999999999864211 00001110 0 11133322 2 356789999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhh
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQE 333 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e 333 (435)
++|.+.|+||+.+ .|+.+.+..++=..+...|.-+
T Consensus 834 ~kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 834 EKAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HHHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHH
Confidence 9999999999976 6778888888777788888643
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.42 Score=42.00 Aligned_cols=113 Identities=14% Similarity=0.096 Sum_probs=76.0
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccc-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMAL-----EEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~-----~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
....|+.+.+...+++++.++ .|..-..........+ ....+.++..++..+...|+|++|+.++++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly---~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~- 91 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALY---RGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL- 91 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT-----SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHCCCHHHHHHHHHHHHHHh---CCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-
Confidence 345688999999999999995 4411100000000001 1223445667888999999999999999999987
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc-CCCCCC
Q 013867 305 EELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLES 359 (435)
Q Consensus 305 e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k-~~~~~h 359 (435)
+|.--..+..|-.+|..+|++.+| ...|++.-..++ .+|.+-
T Consensus 92 -------dP~~E~~~~~lm~~~~~~g~~~~A------~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 92 -------DPYDEEAYRLLMRALAAQGRRAEA------LRVYERYRRRLREELGIEP 134 (146)
T ss_dssp -------STT-HHHHHHHHHHHHHTT-HHHH------HHHHHHHHHHHHHHHS---
T ss_pred -------CCCCHHHHHHHHHHHHHCcCHHHH------HHHHHHHHHHHHHHhCcCc
Confidence 777778888999999999997766 899999999985 566543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5 | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.061 Score=50.36 Aligned_cols=43 Identities=23% Similarity=0.262 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH
Q 013867 273 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 315 (435)
Q Consensus 273 ~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v 315 (435)
.+.+++||-.=|.+||+|..|.++-++||+-.++..|.+||+|
T Consensus 139 rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 139 RLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 6789999999999999999999999999999999999999997
|
This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.92 E-value=2.1 Score=50.84 Aligned_cols=211 Identities=15% Similarity=0.138 Sum_probs=132.5
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
||+-+.--|+|=.=+ -..+..++|..+.|+||..---.=+.+-..+..+|.||=..|. -=+.=.+.|+||-+.
T Consensus 1454 sPNSSi~WI~YMaf~----LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG---~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFH----LELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG---TEESLKKVFERACQY 1526 (1710)
T ss_pred CCCcchHHHHHHHHH----hhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC---cHHHHHHHHHHHHHh
Confidence 344444445543222 1356889999999999985421122344568888888888876 334445566666332
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
. .+..+...+..++++-++ +.+|..++ +.+++..+ +
T Consensus 1527 c-------------------------d~~~V~~~L~~iy~k~ek--~~~A~ell------~~m~KKF~-q---------- 1562 (1710)
T KOG1070|consen 1527 C-------------------------DAYTVHLKLLGIYEKSEK--NDEADELL------RLMLKKFG-Q---------- 1562 (1710)
T ss_pred c-------------------------chHHHHHHHHHHHHHhhc--chhHHHHH------HHHHHHhc-c----------
Confidence 2 222334445555555443 33332221 12223343 1
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
...+-..|+.++..|.+-++|-.+.+|||.-..+. +| +.-+.--|+|-.+-|+-+++..+|
T Consensus 1563 -~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~----------------eH--v~~IskfAqLEFk~GDaeRGRtlf 1623 (1710)
T KOG1070|consen 1563 -TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ----------------EH--VEFISKFAQLEFKYGDAERGRTLF 1623 (1710)
T ss_pred -hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh----------------hh--HHHHHHHHHHHhhcCCchhhHHHH
Confidence 12355678889999999999999999999885321 12 234567899999999999988888
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+--|. .||.--...+-....=..+|..+. .+.||+|+++.-
T Consensus 1624 Egll~--------ayPKRtDlW~VYid~eik~~~~~~------vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1624 EGLLS--------AYPKRTDLWSVYIDMEIKHGDIKY------VRDLFERVIELK 1664 (1710)
T ss_pred HHHHh--------hCccchhHHHHHHHHHHccCCHHH------HHHHHHHHHhcC
Confidence 87775 577766666666666666666443 489999999874
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.26 Score=43.32 Aligned_cols=70 Identities=20% Similarity=0.132 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+...++..+...|+|++|+.++++++.+ +|. .+ .....|-.+|..+|++.+|...|++.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~---------dP~-------~E----~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALAL---------DPY-------DE----EAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH---------STT--------H----HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhc---------CCC-------CH----HHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 35556777888999999999999999999 111 11 23456788999999999999999999
Q ss_pred HHHHHHhhCC
Q 013867 301 LTKTEELFGS 310 (435)
Q Consensus 301 L~I~e~~lG~ 310 (435)
-....+-+|-
T Consensus 123 ~~~l~~elg~ 132 (146)
T PF03704_consen 123 RRRLREELGI 132 (146)
T ss_dssp HHHHHHHHS-
T ss_pred HHHHHHHhCc
Confidence 9999999996
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.18 Score=50.58 Aligned_cols=93 Identities=25% Similarity=0.280 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
...-||.+|..+|+++.|..-|.+|+.+. ++.|+ .+--+|.++..|..-.. -.++..++++||.
T Consensus 158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-----g~n~~---~~~g~aeaL~~~a~~~~---ta~a~~ll~~al~----- 221 (287)
T COG4235 158 GWDLLGRAYMALGRASDALLAYRNALRLA-----GDNPE---ILLGLAEALYYQAGQQM---TAKARALLRQALA----- 221 (287)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHhcCCcc---cHHHHHHHHHHHh-----
Confidence 45578999999999999999999999873 44454 45556666555543321 1356777777765
Q ss_pred CCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 356 PLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
.||-++ +.+..++..+..+|+|++|...+
T Consensus 222 -~D~~~i-ral~lLA~~afe~g~~~~A~~~W 250 (287)
T COG4235 222 -LDPANI-RALSLLAFAAFEQGDYAEAAAAW 250 (287)
T ss_pred -cCCccH-HHHHHHHHHHHHcccHHHHHHHH
Confidence 455553 36777999999999999998876
|
|
| >KOG0508 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.017 Score=60.85 Aligned_cols=122 Identities=17% Similarity=0.189 Sum_probs=82.4
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVA--LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 310 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~--l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~ 310 (435)
..+.-.|..++.+|++.... .++ ..+-.....|.+.+ ..-.+|-..+-.--++. .++--++|-|+|+++|+
T Consensus 259 k~D~~~al~~w~~aMe~r~~-~~e---~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~---d~~RmqaLiirerILgp 331 (615)
T KOG0508|consen 259 KRDLLGALKYWRRAMEERES-DGE---SILEKEPLEPVLAYGYGREVNNREELEELVEDP---DEMRMQALIIRERILGP 331 (615)
T ss_pred hHHHHHHHHHHHHHHHhhhh-ccc---cccccCCCCchhhhhhhhhcCCHHHHHHHhcCh---HHHHHHHHHHHHHHhCC
Confidence 34666788899999988654 111 11110000011100 00112333333333333 34667999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh-cCCCCCCCchhhhhc
Q 013867 311 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL-KAPPLESEGVETKVD 367 (435)
Q Consensus 311 ~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~-k~~~~~hp~~a~~l~ 367 (435)
.||+|.--+.-.+-+|..+|+++.- ..|+.-||++. |.+.|-.|.|++++-
T Consensus 332 sh~d~sYyir~rgavyad~g~~~rC------i~LWkyAL~mqQk~l~PlspmT~ssll 383 (615)
T KOG0508|consen 332 SHPDVSYYIRYRGAVYADSGEFERC------IRLWKYALDMQQKNLEPLSPMTASSLL 383 (615)
T ss_pred CCCCceeEEEeeeeeecCCccHHHH------HHHHHHHHHHHHhhcCCCCcccHHHHH
Confidence 9999999999999999999998876 89999999998 567888888887774
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.097 Score=37.07 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 110 ~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
++..||.+|..+|++++|+..|+++++...
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 567899999999999999999999966543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.36 E-value=6.1 Score=39.34 Aligned_cols=93 Identities=22% Similarity=0.211 Sum_probs=69.3
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 229 ~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
+..+||+--+|+.-...=|+++- + | .-+..-|+.+|...|.|++|.-+|++.+-|
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~-----------~------D---~EAW~eLaeiY~~~~~f~kA~fClEE~ll~----- 183 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFM-----------N------D---QEAWHELAEIYLSEGDFEKAAFCLEELLLI----- 183 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhc-----------C------c---HHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-----
Confidence 44566666666665555555531 0 0 124567899999999999999999999976
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 309 GSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 309 G~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.|..-...--||.++..+|-. .++.-|..+|.|||+|-
T Consensus 184 ---~P~n~l~f~rlae~~Yt~gg~---eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 184 ---QPFNPLYFQRLAEVLYTQGGA---ENLELARKYYERALKLN 221 (289)
T ss_pred ---CCCcHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHhC
Confidence 466666777888888888873 45777899999999997
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.33 E-value=5.6 Score=41.42 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhh
Q 013867 278 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQE 333 (435)
Q Consensus 278 ~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e 333 (435)
..||.+.+..-.|.||...|+|.|. +.|.....=.++|..|....-|+
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYyd 202 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYD 202 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhh
Confidence 3577777878888999999988886 67777777789999999875544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.37 Score=53.47 Aligned_cols=107 Identities=15% Similarity=0.022 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 220 ~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~r 299 (435)
..+-.++|.+.-..+++..|...|.|.+.. . |++ .-+.|||+..|...|+-.+|-..+++
T Consensus 519 ~~~wf~~G~~ALqlek~q~av~aF~rcvtL-----------~-------Pd~--~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 519 LGTWFGLGCAALQLEKEQAAVKAFHRCVTL-----------E-------PDN--AEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred hhHHHhccHHHHHHhhhHHHHHHHHHHhhc-----------C-------CCc--hhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 345566777888899999999999999976 1 111 24689999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC-CCCCC
Q 013867 300 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP-PLESE 360 (435)
Q Consensus 300 AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~-~~~hp 360 (435)
||.-. -+|+.+=. |--.+-..-|.+++| ...|.|-+.+.+.. -++|+
T Consensus 579 AlKcn-----~~~w~iWE---Nymlvsvdvge~eda------~~A~~rll~~~~~~~d~~vl 626 (777)
T KOG1128|consen 579 ALKCN-----YQHWQIWE---NYMLVSVDVGEFEDA------IKAYHRLLDLRKKYKDDEVL 626 (777)
T ss_pred HhhcC-----CCCCeeee---chhhhhhhcccHHHH------HHHHHHHHHhhhhcccchhh
Confidence 99753 57776543 344455677777766 89999999998642 33444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=1 Score=47.98 Aligned_cols=155 Identities=14% Similarity=0.133 Sum_probs=95.6
Q ss_pred hhchHHHHHHHHHHH---HHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH---cCCH------HHHHHHHHHH
Q 013867 233 TRNFLLAKKFYQKVI---EVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH---MGNF------GDAEEILTRT 300 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL---~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~---qG~y------~eAe~l~~rA 300 (435)
.-.-+.|..++.||+ ++ .|..+ .+++.|+..|.. +|-. .+|..+-++|
T Consensus 271 ~~~~~~Al~lf~ra~~~~~l---------dp~~a-----------~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA 330 (458)
T PRK11906 271 PESIYRAMTIFDRLQNKSDI---------QTLKT-----------ECYCLLAECHMSLALHGKSELELAAQKALELLDYV 330 (458)
T ss_pred HHHHHHHHHHHHHHhhcccC---------CcccH-----------HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 345678999999999 55 12222 344555554432 2333 3444555555
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHH
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYA 380 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ya 380 (435)
+++ ++ .=+.++..+|.++...|+++.| ..+++||+.+- |+.+......+.+..-.|+.+
T Consensus 331 vel-----d~---~Da~a~~~~g~~~~~~~~~~~a------~~~f~rA~~L~-------Pn~A~~~~~~~~~~~~~G~~~ 389 (458)
T PRK11906 331 SDI-----TT---VDGKILAIMGLITGLSGQAKVS------HILFEQAKIHS-------TDIASLYYYRALVHFHNEKIE 389 (458)
T ss_pred Hhc-----CC---CCHHHHHHHHHHHHhhcchhhH------HHHHHHHhhcC-------CccHHHHHHHHHHHHHcCCHH
Confidence 543 33 3456778888888888887655 89999999876 666667777888888889999
Q ss_pred HHhhHhhh--hhh----HHHHHHHHHHHHhcccchhHHHHhcccCCC--CCCceeee
Q 013867 381 EALSVQQN--RKD----EGERMKRWAEAAWRNRRVSLAEALNFSEPS--NKPLVIDA 429 (435)
Q Consensus 381 eal~~~~~--r~~----eae~~~~~a~~~~~~~r~~l~~~l~~~~~~--~~~~~~~~ 429 (435)
+|....++ |-+ .+-.++.|-..+..+ ++.-+=.|...|.- +.-|+||.
T Consensus 390 ~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 445 (458)
T PRK11906 390 EARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYKETESESHRVIIDN 445 (458)
T ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhhccccccchhhHHH
Confidence 99775432 111 234444555555544 34555555544433 45578873
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.083 Score=32.07 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
...++|.+|..+|+|++|...|++++.+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 45789999999999999999999999763
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.77 Score=46.13 Aligned_cols=105 Identities=14% Similarity=0.091 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCC---HHHHHHH
Q 013867 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN---FGDAEEI 296 (435)
Q Consensus 220 ~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~---y~eAe~l 296 (435)
+.--.-+|.+|..+|+++.|..-|.+|+.+ .+ ++ | ..+..+|.++..|.. -.+|..+
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL----~g--~n---------~-----~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRL----AG--DN---------P-----EILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHh----CC--CC---------H-----HHHHHHHHHHHHhcCCcccHHHHHH
Confidence 334445799999999999999999999999 11 11 1 345677777665543 4568888
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCc
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEG 361 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~ 361 (435)
+++||.. || .=..++.-||.-+..+|+|.+| ...++.-|+.. +++.|.
T Consensus 216 l~~al~~-------D~-~~iral~lLA~~afe~g~~~~A------~~~Wq~lL~~l---p~~~~r 263 (287)
T COG4235 216 LRQALAL-------DP-ANIRALSLLAFAAFEQGDYAEA------AAAWQMLLDLL---PADDPR 263 (287)
T ss_pred HHHHHhc-------CC-ccHHHHHHHHHHHHHcccHHHH------HHHHHHHHhcC---CCCCch
Confidence 8888764 44 4446788899999999997766 66677666554 455553
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.54 Score=45.24 Aligned_cols=105 Identities=20% Similarity=0.209 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchh
Q 013867 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYK 185 (435)
Q Consensus 106 ~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ 185 (435)
.-+..+-.=|+-++..|.|.+|...|..|+++..+...- ..+..+.++.+.+. +.++ ++
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e------------------~rsIly~Nraaa~i-Kl~k--~e 151 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTE------------------ERSILYSNRAAALI-KLRK--WE 151 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHH------------------HHHHHHhhhHHHHH-Hhhh--HH
Confidence 345667777888999999999999999999988765321 11112223333322 2221 33
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 013867 186 TYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 249 (435)
Q Consensus 186 eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I 249 (435)
.++....+||. ++ |.+..+....|.+|..+.+|++|..=|++.+++
T Consensus 152 --~aI~dcsKaie-----l~-----------pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 152 --SAIEDCSKAIE-----LN-----------PTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred --HHHHHHHhhHh-----cC-----------chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 34555666665 22 344456667799999999999999999999988
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.65 Score=43.70 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHhh
Q 013867 275 AATFALGQLEAHMGN----FGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~----y~eAe~l~~rAL~I~e~~l 308 (435)
.++.+||+.|.++|. -.+|+.+|++|..-+++..
T Consensus 70 dAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv 107 (186)
T PF06552_consen 70 DALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAV 107 (186)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH
Confidence 578999999999886 4578888888887776643
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.67 E-value=5.9 Score=38.78 Aligned_cols=207 Identities=14% Similarity=0.151 Sum_probs=107.1
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
|.|-.+-|.-=|.|+|+|. |+.+.++|-||.-+..-|+|+.|.+.|.-.+++..+- .-+-+|.-..+|
T Consensus 77 SlGL~~LAR~DftQaLai~--------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---~Ya~lNRgi~~Y- 144 (297)
T COG4785 77 SLGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLNRGIALY- 144 (297)
T ss_pred hhhHHHHHhhhhhhhhhcC--------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc---hHHHhccceeee-
Confidence 5566666666667777666 7788899999999999999999999998887655322 111122111111
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHH--------HHHHHHHHHhcCCCcccccccccchhHHHHHHHHH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRA--------NAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEY 229 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a--------~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~ 229 (435)
--|++..|. +.....++..-++.| ..+-.+- +|-..+++...|. + +.. ..-++-.+
T Consensus 145 Y~gR~~LAq---~d~~~fYQ~D~~DPf---R~LWLYl~E~k~dP~~A~tnL~qR~~~~-d------~e~---WG~~iV~~ 208 (297)
T COG4785 145 YGGRYKLAQ---DDLLAFYQDDPNDPF---RSLWLYLNEQKLDPKQAKTNLKQRAEKS-D------KEQ---WGWNIVEF 208 (297)
T ss_pred ecCchHhhH---HHHHHHHhcCCCChH---HHHHHHHHHhhCCHHHHHHHHHHHHHhc-c------Hhh---hhHHHHHH
Confidence 123333322 122222222111111 1111110 0011111111110 0 011 11122222
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG 309 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG 309 (435)
| .|+..+ +.+++|+.+..++ ...++ +++ .-+..-||-.|..+|+.++|..+|+-|++-..=-|
T Consensus 209 y--LgkiS~-e~l~~~~~a~a~~------n~~~A------e~L-TEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynf- 271 (297)
T COG4785 209 Y--LGKISE-ETLMERLKADATD------NTSLA------EHL-TETYFYLGKYYLSLGDLDEATALFKLAVANNVYNF- 271 (297)
T ss_pred H--HhhccH-HHHHHHHHhhccc------hHHHH------HHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHH-
Confidence 2 355544 5678888777432 11222 222 23677899999999999999999998776533222
Q ss_pred CCChhHHHHHHHHHHHHHHhhhh
Q 013867 310 SHHPKVGVVLTCLALMFRNKAMQ 332 (435)
Q Consensus 310 ~~HP~va~~L~nLA~ly~~qG~~ 332 (435)
-..--++.-|+.++..|.+.
T Consensus 272 ---VE~RyA~~EL~~l~q~~~~l 291 (297)
T COG4785 272 ---VEHRYALLELSLLGQDQDDL 291 (297)
T ss_pred ---HHHHHHHHHHHHhccccchh
Confidence 11233455566666665443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.09 Score=31.90 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 109 ISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 109 ~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
..+.++|.+|..+|+|++|+..|++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46789999999999999999999998654
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.12 Score=53.15 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 278 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 278 ~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
---|+-|.+||+|+||..+|.++++. .|.-.....|.|..|-.+.++..| |.=+.-|+.+-
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~A------E~DC~~AiaLd 161 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQA------EEDCEAAIALD 161 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHH------HHhHHHHHHhh
Confidence 34588999999999999999999975 466678899999999999886544 77676666654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.2 Score=41.55 Aligned_cols=97 Identities=9% Similarity=0.067 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
+-.+...+|.+|.+.|++++|...|.|+.+- ..+ +.| .+....++-.+...+|+|.....+..
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-----------~~~-----~~~-~id~~l~~irv~i~~~d~~~v~~~i~ 97 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDY-----------CTS-----PGH-KIDMCLNVIRVAIFFGDWSHVEKYIE 97 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh-----------cCC-----HHH-HHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4456677899999999999999999997765 222 222 23455678888889999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHH-HHHhhhhhhh
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALM-FRNKAMQEHS 335 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~l-y~~qG~~e~A 335 (435)
+|-.+-++ |.+ ++.-.-|.....+ +-.+++|.+|
T Consensus 98 ka~~~~~~--~~d-~~~~nrlk~~~gL~~l~~r~f~~A 132 (177)
T PF10602_consen 98 KAESLIEK--GGD-WERRNRLKVYEGLANLAQRDFKEA 132 (177)
T ss_pred HHHHHHhc--cch-HHHHHHHHHHHHHHHHHhchHHHH
Confidence 99999988 322 4443333332222 2345565443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.12 Score=33.36 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
++.++|.+|..+|++++|...|++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999874
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.14 Score=33.09 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 110 SLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 110 ~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
++.++|.+|..+|++++|+..|++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 578999999999999999999998754
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.92 E-value=4 Score=47.25 Aligned_cols=222 Identities=17% Similarity=0.110 Sum_probs=121.0
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHH------HHHHH-
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR------VAAME- 150 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~------vaale- 150 (435)
..|+|.=|.-+|-+++--. |--.-+..|+|.++...-+++.|.+.|.+++.+...-+-.. ..+++
T Consensus 828 g~gnva~aQHCfIks~~se--------p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ 899 (1238)
T KOG1127|consen 828 GIGNVACAQHCFIKSRFSE--------PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGR 899 (1238)
T ss_pred ccchhhhhhhhhhhhhhcc--------ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHH
Confidence 3588999999998877333 44556778999999999999999999988887665432210 00111
Q ss_pred ---HH--HHH--HHhcCCCcchHHHHHHHHHHHH-hcCCCchh----chhhHHHHHHHHHHHHHHhcCCCcccccccccc
Q 013867 151 ---AL--AGL--YLQLGQDDTSSVVADKCLQLCE-KHKPENYK----TYGAVNSRANAVKGLVELAHGNLESGLQEEEGC 218 (435)
Q Consensus 151 ---~L--~g~--~~~~g~~~~A~~~~~~~~~l~~-~~~~~~~~----eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~ 218 (435)
.+ +.. ...+|......-.+-.|.-... ..+ +++ .++.+-.-..++. +.++ +|| +
T Consensus 900 ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng--~~e~~I~t~~ki~sAs~al~---~yf~-~~p--------~ 965 (1238)
T KOG1127|consen 900 IIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNG--NIEESINTARKISSASLALS---YYFL-GHP--------Q 965 (1238)
T ss_pred HHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhcc--chHHHHHHhhhhhhhHHHHH---HHHh-cCc--------c
Confidence 00 000 1222322111111111111111 111 111 1122222222222 2233 333 2
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
..-+..-.+.++..++.|.+|.+++.|.+.+.+........+ .+--++|.++...|.|+.|..-+.
T Consensus 966 ~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqyn--------------vak~~~gRL~lslgefe~A~~a~~ 1031 (1238)
T KOG1127|consen 966 LCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYN--------------VAKPDAGRLELSLGEFESAKKASW 1031 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------------hhhhhhhhhhhhhcchhhHhhhhc
Confidence 223334446678889999999999999999987655421111 123578999999999997754322
Q ss_pred H-HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 299 R-TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 299 r-AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
. -++..|..-| +..++ .-.++|+++ +..|+|||-|.+
T Consensus 1032 ~~~~evdEdi~g-----t~l~l-------Ffkndf~~s------l~~fe~aLsis~ 1069 (1238)
T KOG1127|consen 1032 KEWMEVDEDIRG-----TDLTL-------FFKNDFFSS------LEFFEQALSISN 1069 (1238)
T ss_pred ccchhHHHHHhh-----hhHHH-------HHHhHHHHH------HHHHHHHhhhcc
Confidence 1 1222333222 22222 345676665 788888888875
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.14 Score=32.41 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~r 299 (435)
+..+||.+|..+|++++|+.+++|
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 457999999999999999999874
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.32 Score=34.13 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
++.-||.+-...++|++|..=|++||+|+++.+.++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345789999999999999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.73 E-value=5.8 Score=45.31 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=51.7
Q ss_pred CCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 56 ~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
..||+.-...+=-|+++.| +|++++|..++|- + . ..++++. .++..|-.+|.++|++++|..+|+++.
T Consensus 37 kk~Pn~~~a~vLkaLsl~r----~gk~~ea~~~Le~-~---~-~~~~~D~---~tLq~l~~~y~d~~~~d~~~~~Ye~~~ 104 (932)
T KOG2053|consen 37 KKHPNALYAKVLKALSLFR----LGKGDEALKLLEA-L---Y-GLKGTDD---LTLQFLQNVYRDLGKLDEAVHLYERAN 104 (932)
T ss_pred HHCCCcHHHHHHHHHHHHH----hcCchhHHHHHhh-h---c-cCCCCch---HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4678777777788888865 6899999955553 2 2 2233332 455667789999999999999999985
Q ss_pred Hhh
Q 013867 136 NFK 138 (435)
Q Consensus 136 ~i~ 138 (435)
.-.
T Consensus 105 ~~~ 107 (932)
T KOG2053|consen 105 QKY 107 (932)
T ss_pred hhC
Confidence 443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.27 E-value=2 Score=45.80 Aligned_cols=85 Identities=9% Similarity=0.054 Sum_probs=68.3
Q ss_pred hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCh
Q 013867 234 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP 313 (435)
Q Consensus 234 G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP 313 (435)
..-.+|..+-+||+++ . + . ...++..+|.++...|+++.|..+|+||+.+ .|
T Consensus 318 ~~~~~a~~~A~rAvel---d-----~-~-----------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~P 369 (458)
T PRK11906 318 LAAQKALELLDYVSDI---T-----T-V-----------DGKILAIMGLITGLSGQAKVSHILFEQAKIH--------ST 369 (458)
T ss_pred HHHHHHHHHHHHHHhc---C-----C-C-----------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CC
Confidence 3445788888888888 1 1 0 1146778899999999999999999999986 68
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 314 KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 314 ~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.|.++.-.|.+..--|+.++| ....++|+..-
T Consensus 370 n~A~~~~~~~~~~~~~G~~~~a------~~~i~~alrLs 402 (458)
T PRK11906 370 DIASLYYYRALVHFHNEKIEEA------RICIDKSLQLE 402 (458)
T ss_pred ccHHHHHHHHHHHHHcCCHHHH------HHHHHHHhccC
Confidence 8999999999999999998776 78888887764
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.2 Score=36.44 Aligned_cols=69 Identities=16% Similarity=0.033 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
.+|..++.-++.+. .+-+.++|+..++++|+... +-|+.=.++..|..+|.+.|+|.+.+.+.-+=+++
T Consensus 4 ~~ak~~ie~GlkLY----~~~~~~~Al~~W~~aL~k~~-----~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 4 DQAKQQIEKGLKLY----HQNETQQALQKWRKALEKIT-----DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHHh----ccchHHHHHHHHHHHHhhcC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888874 24589999999999998774 34678888999999999999999998876554333
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.96 Score=42.10 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
.++..+|..|.+.|++++|.+.|.++. +...++.| +....-++-.+.--.+++... .....+|-.+.+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~---~~~~~~~~--~id~~l~~irv~i~~~d~~~v------~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRAR---DYCTSPGH--KIDMCLNVIRVAIFFGDWSHV------EKYIEKAESLIEK 105 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHh---hhcCCHHH--HHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHHhc
Confidence 467899999999999999999999954 45666666 667777777788888887665 6778888888865
Q ss_pred CCCCCCchhhhhc-cHHHHHHHhcCHHHHhhHh
Q 013867 355 PPLESEGVETKVD-RTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 355 ~~~~hp~~a~~l~-nla~~~~a~G~yaeal~~~ 386 (435)
.+ ..+...-+. .-++.++.+|+|.+|-..+
T Consensus 106 ~~--d~~~~nrlk~~~gL~~l~~r~f~~AA~~f 136 (177)
T PF10602_consen 106 GG--DWERRNRLKVYEGLANLAQRDFKEAAELF 136 (177)
T ss_pred cc--hHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 22 233222222 3566677889999887765
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.68 Score=47.97 Aligned_cols=141 Identities=19% Similarity=0.207 Sum_probs=84.7
Q ss_pred hchHHHHHHHHHHHHHHHHhcccCCCCCccc-ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013867 234 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS-CNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH 312 (435)
Q Consensus 234 G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~-~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~H 312 (435)
..|.++...|..+++.. ++..+.. -..+|=| +.++.-++.++..||++..|-++.+|||-+.|.++.+.=
T Consensus 8 ~~Y~~~q~~F~~~v~~~-------Dp~~l~~ll~~~PyH--idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F 78 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSH-------DPNALINLLQKNPYH--IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSF 78 (360)
T ss_pred HHHHHHHHHHHHHHHcc-------CHHHHHHHHHHCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34777777777777652 1111110 0012333 468899999999999999999999999999998875543
Q ss_pred hhHHHHH------------HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC-CCCCC-chhhhhccHHHHHHHhcC
Q 013867 313 PKVGVVL------------TCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP-PLESE-GVETKVDRTDIVALARGG 378 (435)
Q Consensus 313 P~va~~L------------~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~-~~~hp-~~a~~l~nla~~~~a~G~ 378 (435)
+...... .|.. +|..--+|-++ ..-.+.++.|+|+.|-+ ..|.. |-.-++--++..++.-++
T Consensus 79 ~~~~~~~~~g~~rL~~~~~eNR~-fflal~r~i~~---L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 79 SPFRSNLTSGNCRLDYRRPENRQ-FFLALFRYIQS---LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ 154 (360)
T ss_pred hhhhcccccCccccCCccccchH-HHHHHHHHHHH---HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC
Confidence 2211010 0111 12222222221 12268899999999853 44443 323345557777777788
Q ss_pred HHHHhhHhh
Q 013867 379 YAEALSVQQ 387 (435)
Q Consensus 379 yaeal~~~~ 387 (435)
|.-.+.+..
T Consensus 155 y~~Li~~~~ 163 (360)
T PF04910_consen 155 YQWLIDFSE 163 (360)
T ss_pred HHHHHHHHH
Confidence 887777664
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.74 E-value=22 Score=38.49 Aligned_cols=242 Identities=16% Similarity=0.149 Sum_probs=136.7
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHH---H--HH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWR------GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV---R--VA 147 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~------A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i---~--va 147 (435)
.|-|++|..+-++++.-.++.-..+--+- -+.+-++.-.---.|+|.+|++-.....+...+.-+. + .+
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 57899999999988877665432221111 1234455555666999999998887776655443331 1 11
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHH
Q 013867 148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYG 227 (435)
Q Consensus 148 ale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la 227 (435)
-+.-|.|+| -... .-|++||..+.-+ .+. + ++. +-..-.-.|+|
T Consensus 368 ~ih~LlGly--------------------s~sv-~~~enAe~hf~~a--~k~----t--~~~-------dl~a~~nlnlA 411 (629)
T KOG2300|consen 368 QIHMLLGLY--------------------SHSV-NCYENAEFHFIEA--TKL----T--ESI-------DLQAFCNLNLA 411 (629)
T ss_pred HHHHHHhhH--------------------hhhc-chHHHHHHHHHHH--HHh----h--hHH-------HHHHHHHHhHH
Confidence 233344443 1111 0144455543322 221 0 000 00112334577
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013867 228 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL 307 (435)
Q Consensus 228 ~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~ 307 (435)
..|-.+|+ ++.+|+ +++. .+..+.+.+. ..-...+.+.--|.....|++|.||..++.+.|.+.. .
T Consensus 412 i~YL~~~~---~ed~y~-~ld~----i~p~nt~s~s-----sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman-a 477 (629)
T KOG2300|consen 412 ISYLRIGD---AEDLYK-ALDL----IGPLNTNSLS-----SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN-A 477 (629)
T ss_pred HHHHHhcc---HHHHHH-HHHh----cCCCCCCcch-----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-h
Confidence 78888765 455554 4443 1211111111 1111222345568888999999999999999999961 1
Q ss_pred hCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcC
Q 013867 308 FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG 378 (435)
Q Consensus 308 lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ 378 (435)
- +..--|+-.|.=|+.+.-.-|+..++ +...+-++..-|+. +|+|-..=+..-+-.++++-|+
T Consensus 478 e-d~~rL~a~~LvLLs~v~lslgn~~es------~nmvrpamqlAkKi-~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 478 E-DLNRLTACSLVLLSHVFLSLGNTVES------RNMVRPAMQLAKKI-PDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred h-hHHHHHHHHHHHHHHHHHHhcchHHH------HhccchHHHHHhcC-CCchHHHHHHHHHHHHHHHhCc
Confidence 1 12233899999999999999997665 88889999988653 5555422222223344566665
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.21 Score=31.61 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 109 ISLLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 109 ~~l~nLa~ly~~qGky~eA~~l~~r 133 (435)
..+.+||.+|..+|++++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4578999999999999999988764
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.00 E-value=4.5 Score=40.92 Aligned_cols=87 Identities=16% Similarity=0.152 Sum_probs=64.1
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---------
Q 013867 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR--------- 299 (435)
Q Consensus 229 ~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~r--------- 299 (435)
-....|++.+|.+++..+++... . . + .....|+.+|...|++++|+.++..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~---~---~---~-----------~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~ 202 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP---E---N---S-----------EAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA 202 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc---c---c---c-----------hHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH
Confidence 34678999999999999999831 1 0 1 3456799999999999999998865
Q ss_pred ------HHHHHHHhhCC-----------CChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 300 ------TLTKTEELFGS-----------HHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 300 ------AL~I~e~~lG~-----------~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
-++..++.-.. ..|+-...-.-||..|...|++|.|
T Consensus 203 ~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~A 255 (304)
T COG3118 203 AHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAA 255 (304)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 24444433332 2455555667899999999999988
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=90.54 E-value=4.7 Score=43.19 Aligned_cols=112 Identities=17% Similarity=0.120 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
....-|.++..+|+.++|+..|++++....+.+. +..-++..+|-.+..+++|++|...|.+.+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q----------------l~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQ----------------LHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHh----------------HHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 3444577899999999999999999965322111 112346689999999999999998888777
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHHHHHHHHHh-cCCC
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL-LIQEGLYRRALEFL-KAPP 356 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~-~~Ae~Ly~rAL~I~-k~~~ 356 (435)
+ .+..+-+.-..-.|..|...|+.+++... .+|..+++++-... |..|
T Consensus 333 ~-------~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~g 382 (468)
T PF10300_consen 333 K-------ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAG 382 (468)
T ss_pred h-------ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 6 46677888888889999999987444333 56688888888777 3334
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.97 Score=40.90 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=45.2
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
.|+|.+|+..|+....-. |--|..-++...|+.+|+.+|+|++|+.-+++=+.+
T Consensus 23 ~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred hCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 589999999999876555 444677889999999999999999999988886443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=89.88 E-value=5.7 Score=42.60 Aligned_cols=79 Identities=18% Similarity=0.078 Sum_probs=53.7
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
....++|+.+++..+ ..+|.=+-.+..-|.++..+|+.++|++.|+++.......-.+..-..-.++..++-
T Consensus 246 ~~~~~~a~~lL~~~~--------~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~ 317 (468)
T PF10300_consen 246 DVPLEEAEELLEEML--------KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF 317 (468)
T ss_pred CCCHHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH
Confidence 456678888888877 445777888999999999999999999999998643333222222223344444555
Q ss_pred cCCCcch
Q 013867 159 LGQDDTS 165 (435)
Q Consensus 159 ~g~~~~A 165 (435)
++++..|
T Consensus 318 ~~~w~~A 324 (468)
T PF10300_consen 318 QHDWEEA 324 (468)
T ss_pred HchHHHH
Confidence 5555443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=89.51 E-value=2.9 Score=37.20 Aligned_cols=77 Identities=13% Similarity=0.009 Sum_probs=57.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH-------HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 279 ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV-------GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 279 nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v-------a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
++|.--...+++-.+.-.|++||.+.|+.--.+.-++ ..+..|||..|+.+|+-+=. ....+=|-+-
T Consensus 6 llAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yE------LkYLqlASE~ 79 (140)
T PF10952_consen 6 LLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYE------LKYLQLASEK 79 (140)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHH------HHHHHHHHHH
Confidence 5777778899999999999999999999843444332 45789999999999996533 5556666665
Q ss_pred hcCCCCCCCc
Q 013867 352 LKAPPLESEG 361 (435)
Q Consensus 352 ~k~~~~~hp~ 361 (435)
.-++-|..|.
T Consensus 80 VltLiPQCp~ 89 (140)
T PF10952_consen 80 VLTLIPQCPN 89 (140)
T ss_pred HHHhccCCCC
Confidence 5556666664
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.41 E-value=0.63 Score=32.64 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhH
Q 013867 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL 142 (435)
Q Consensus 108 A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L 142 (435)
|.++..||.+-...++|++|++=|+++++|.++.+
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 45788999999999999999999999988887654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=89.24 E-value=0.89 Score=44.32 Aligned_cols=57 Identities=18% Similarity=0.104 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhh
Q 013867 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 82 Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~-qGky~eA~~l~~ral~i~ 138 (435)
-++|...|++|+.+..+.+.+.||-......|.+..|++ .|+.++|+++.++|++-.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 479999999999999998999999999999999998755 999999999999986544
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=88.86 E-value=1.2 Score=47.86 Aligned_cols=82 Identities=15% Similarity=0.080 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHHHhccCcCCCCC----cchH-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--hh
Q 013867 81 SYSQGMLVLEQCLSTQPSDGQLA----ESWR-------------GISLLAMSTLLYESGNYVEAIEKLQKVENFKN--SI 141 (435)
Q Consensus 81 ~Y~eA~~~~eqaL~i~~~~lG~~----Hp~~-------------A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e--~~ 141 (435)
.-.||+.+|+|+++..+..+|.+ |.+- .-.-..||...++.|+.+||+++++.-++... +.
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~ 294 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN 294 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch
Confidence 46799999999999998888743 2110 11234689999999999999999998865432 34
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchH
Q 013867 142 LGVRVAAMEALAGLYLQLGQDDTSS 166 (435)
Q Consensus 142 L~i~vaale~L~g~~~~~g~~~~A~ 166 (435)
++|+ ++|...+++++.|..++
T Consensus 295 l~Ir----enLie~LLelq~Yad~q 315 (539)
T PF04184_consen 295 LNIR----ENLIEALLELQAYADVQ 315 (539)
T ss_pred hhHH----HHHHHHHHhcCCHHHHH
Confidence 5554 67778888888876544
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.49 E-value=27 Score=35.47 Aligned_cols=78 Identities=19% Similarity=0.325 Sum_probs=51.1
Q ss_pred CCCccc---CCCCChHHHHHHHHHHHHh--------hhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHH
Q 013867 48 GNGNRI---NGLNSNPVVLQMINYALSH--------ARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMST 116 (435)
Q Consensus 48 ~~~~~~---~g~~~~~vA~~m~~~a~~~--------~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ 116 (435)
..|.++ .|+...+-..+++..-+.- ++..-..|++.+|.+.|.+++....+ .......|+.
T Consensus 105 ~dGqpVdgF~G~qPesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~--------~~~~~~~la~ 176 (304)
T COG3118 105 KDGQPVDGFQGAQPESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE--------NSEAKLLLAE 176 (304)
T ss_pred eCCcCccccCCCCcHHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc--------cchHHHHHHH
Confidence 345555 4777776655555432221 11223567888999999998876643 3555667888
Q ss_pred HHHHcCCHHHHHHHHHH
Q 013867 117 LLYESGNYVEAIEKLQK 133 (435)
Q Consensus 117 ly~~qGky~eA~~l~~r 133 (435)
+|...|++++|..++..
T Consensus 177 ~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 177 CLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHcCChHHHHHHHHh
Confidence 99999999888877654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=88.08 E-value=8.1 Score=41.74 Aligned_cols=135 Identities=17% Similarity=0.132 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
..+..+-.-....-+..+-+.+-++||+|.. .- ..++.-||. ..----.||+.+|+||
T Consensus 169 r~Aq~IMq~AWRERnp~aRIkaA~eALei~p---------dC-----------AdAYILLAE--EeA~Ti~Eae~l~rqA 226 (539)
T PF04184_consen 169 RPAQEIMQKAWRERNPQARIKAAKEALEINP---------DC-----------ADAYILLAE--EEASTIVEAEELLRQA 226 (539)
T ss_pred CHHHHHHHHHHhcCCHHHHHHHHHHHHHhhh---------hh-----------hHHHhhccc--ccccCHHHHHHHHHHH
Confidence 3444443344677888999999999999921 10 123333332 1223468999999999
Q ss_pred HHHHHHhhCCCChh-----------------HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchh
Q 013867 301 LTKTEELFGSHHPK-----------------VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 363 (435)
Q Consensus 301 L~I~e~~lG~~HP~-----------------va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a 363 (435)
++..|..+|.+... ..-+-..||...++.|+.+|| ..+|+.-+.-. +.. +..
T Consensus 227 vkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EA------Ik~~rdLlke~--p~~---~~l 295 (539)
T PF04184_consen 227 VKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREA------IKMFRDLLKEF--PNL---DNL 295 (539)
T ss_pred HHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHH------HHHHHHHHhhC--Ccc---chh
Confidence 99999999986311 022345699999999997766 66665433322 111 233
Q ss_pred hhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 364 TKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 364 ~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
..-.|+-.+++..++|+++..+-.+
T Consensus 296 ~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 296 NIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3445788889999999999777644
|
The molecular function of this protein is uncertain. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=87.99 E-value=1.7 Score=35.47 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=49.4
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013867 231 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 310 (435)
Q Consensus 231 ~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~ 310 (435)
+.+.+.++|+..+++||....+ . ++ .-.++.-|.++|.++|+|.+...+-.+=+.|.++.=.|
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~--------~-------~~--rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITD--------R-------ED--RFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCC--------h-------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4677889999999999987311 1 22 33577889999999999999999999999998876443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=87.92 E-value=28 Score=33.92 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH-HHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 290 FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF-RNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 290 y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly-~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
-++|...|++|+++.++.+.|.||--....-|.+..| .-.|+.++| ...|..-|..|+.-+..+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A--~~ia~~afd~a~~~l~~l 206 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKA--IEIAKQAFDEAISELDTL 206 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHH--HHHHHHHHHHHHHGGGGS
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHH--HHHHHHHHHHHHhhhccc
Confidence 3679999999999999999999999777777777766 668888888 555666677777666544
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=86.90 E-value=1.4 Score=36.57 Aligned_cols=52 Identities=25% Similarity=0.333 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHhhCCCChhHHHHHHHHHHHH
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTK---------------TEELFGSHHPKVGVVLTCLALMF 326 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I---------------~e~~lG~~HP~va~~L~nLA~ly 326 (435)
.+...||..|...|+|++|.+.+...+.. .=+.+|+.||-|...-..|+.++
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLASLL 89 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh
Confidence 57789999999999999999998766543 23468999999998888887764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=86.80 E-value=11 Score=39.37 Aligned_cols=141 Identities=16% Similarity=0.115 Sum_probs=79.3
Q ss_pred HHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHh
Q 013867 67 NYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE---------SGNYVEAIEKLQKVENF 137 (435)
Q Consensus 67 ~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~---------qGky~eA~~l~~ral~i 137 (435)
.||..+-|.. ..|+.++|+.++++.|.-.. ...|+ ++--+|.+|.+ ....++|+..|+++..+
T Consensus 184 ~yafALnRrn-~~gdre~Al~il~~~l~~~~----~~~~d---~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 184 QYAFALNRRN-KPGDREKALQILLPVLESDE----NPDPD---TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHHHhhcc-cCCCHHHHHHHHHHHHhccC----CCChH---HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 6888887754 46899999999999865443 22333 55556666543 34578899999988776
Q ss_pred hhh-hHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccc
Q 013867 138 KNS-ILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEE 216 (435)
Q Consensus 138 ~e~-~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~ 216 (435)
... ..||.++++=.+.| +++.... .+.....-+.. .+| +-.+. ..
T Consensus 256 ~~~~Y~GIN~AtLL~~~g-----~~~~~~~----------------------el~~i~~~l~~---llg-~kg~~---~~ 301 (374)
T PF13281_consen 256 EPDYYSGINAATLLMLAG-----HDFETSE----------------------ELRKIGVKLSS---LLG-RKGSL---EK 301 (374)
T ss_pred CccccchHHHHHHHHHcC-----CcccchH----------------------HHHHHHHHHHH---HHH-hhccc---cc
Confidence 642 24665555422222 2121111 11111100111 111 10010 01
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 249 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I 249 (435)
.......-.++++.--.|++++|.+.+++++..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 122344455677777789999999999999966
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=86.75 E-value=2.6 Score=40.72 Aligned_cols=62 Identities=26% Similarity=0.308 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 013867 239 AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVV 318 (435)
Q Consensus 239 Ae~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~ 318 (435)
|+.+|.+|+.+. |..| ...|-||.++..+|++=+|.=+|.|+|.. .+|. ..+
T Consensus 1 A~~~Y~~A~~l~---------P~~G-----------~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A 52 (278)
T PF10373_consen 1 AERYYRKAIRLL---------PSNG-----------NPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSA 52 (278)
T ss_dssp HHHHHHHHHHH----------TTBS-----------HHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHH
T ss_pred CHHHHHHHHHhC---------CCCC-----------CcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHH
Confidence 789999999992 3445 34688999999999999999999999976 7887 788
Q ss_pred HHHHHHHHHH
Q 013867 319 LTCLALMFRN 328 (435)
Q Consensus 319 L~nLA~ly~~ 328 (435)
..||..++..
T Consensus 53 ~~NL~~lf~~ 62 (278)
T PF10373_consen 53 RENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999988
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.50 E-value=14 Score=36.58 Aligned_cols=90 Identities=13% Similarity=0.091 Sum_probs=71.4
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG 309 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG 309 (435)
|..-.+|+.|+..|-|||.| . .+++ .-..|-+..|.+..+|+..+.=-.||+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~---------n-P~~~----------~Y~tnralchlk~~~~~~v~~dcrralql------ 73 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI---------N-PTVA----------SYYTNRALCHLKLKHWEPVEEDCRRALQL------ 73 (284)
T ss_pred ccchhhhchHHHHHHHHHhc---------C-CCcc----------hhhhhHHHHHHHhhhhhhhhhhHHHHHhc------
Confidence 34457899999999999988 1 2221 12347777888899999999999999997
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 310 SHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 310 ~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
.|..+....-||........|+ +|.+..+||....+
T Consensus 74 --~~N~vk~h~flg~~~l~s~~~~------eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 74 --DPNLVKAHYFLGQWLLQSKGYD------EAIKVLQRAYSLLR 109 (284)
T ss_pred --ChHHHHHHHHHHHHHHhhcccc------HHHHHHHHHHHHHh
Confidence 5788888888998888776654 55999999999986
|
|
| >PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5 | Back alignment and domain information |
|---|
Probab=86.22 E-value=0.89 Score=42.57 Aligned_cols=51 Identities=24% Similarity=0.211 Sum_probs=40.2
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh-cCCCCCCCch
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL-KAPPLESEGV 362 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~-k~~~~~hp~~ 362 (435)
..-|.+.|.-..+|.||-.=|..||+|+-| .++.+.||+-. +..|-+||++
T Consensus 130 ~~~~~E~~~rl~tL~nlv~q~~~q~r~eva------v~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 130 QSQGYEIPARLRTLHNLVIQYESQGRYEVA------VPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp --S-TTS-HHHHHHHHHHHHHHHTT-HHHH------HHHHHHHHHHHHHHH-SSSHHH
T ss_pred HhccccchHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHhhhcccCC
Confidence 456779999999999999999999998755 89999999998 5679999975
|
This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F. |
| >smart00101 14_3_3 14-3-3 homologues | Back alignment and domain information |
|---|
Probab=85.41 E-value=2.6 Score=41.47 Aligned_cols=56 Identities=11% Similarity=0.004 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 013867 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYES-GNYVEAIEKLQKVENF 137 (435)
Q Consensus 82 Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~q-Gky~eA~~l~~ral~i 137 (435)
-++|...|++|+++..+.+.+.||-......|.+..|++. ++-++|.++.++|++-
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4589999999999988889999999999999999997775 9999999999998653
|
14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases. |
| >KOG0508 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.26 E-value=1.1 Score=47.64 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 013867 240 KKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL 319 (435)
Q Consensus 240 e~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L 319 (435)
..+--++|=|.+..+| +.|+... . .+.--|-+|.++|+|+.-..|.+-||.+..+.|-|-.|-|++++
T Consensus 315 d~~RmqaLiirerILg-psh~d~s--Y---------yir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssl 382 (615)
T KOG0508|consen 315 DEMRMQALIIRERILG-PSHPDVS--Y---------YIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSL 382 (615)
T ss_pred HHHHHHHHHHHHHHhC-CCCCCce--e---------EEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHH
Confidence 4567789999877666 3333322 0 12356889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 013867 320 TCLALMFRNK 329 (435)
Q Consensus 320 ~nLA~ly~~q 329 (435)
-..|.+++.+
T Consensus 383 lsFaelFS~m 392 (615)
T KOG0508|consen 383 LSFAELFSFM 392 (615)
T ss_pred HHHHHHHHHH
Confidence 9999998754
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.60 E-value=12 Score=37.24 Aligned_cols=104 Identities=17% Similarity=0.121 Sum_probs=70.9
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHH-----HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-----ATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~-----~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
|+-+..+|+|.||..-|+.|+.+.+. +..... +|. |+=+.+. -+.|..+.+...|+|-|+++.-...|
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~-L~lkEk--P~e----~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRN-LQLKEK--PGE----PEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHH-HHhccC--CCC----hHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 44567899999999999999999764 221222 221 3322333 24689999999999999998887777
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
. .||....+|...|.....-=+- .+|+.=+..+|+.
T Consensus 258 ~--------~~~~nvKA~frRakAhaa~Wn~------~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 R--------HHPGNVKAYFRRAKAHAAVWNE------AEAKADLQKVLEL 293 (329)
T ss_pred h--------cCCchHHHHHHHHHHHHhhcCH------HHHHHHHHHHHhc
Confidence 5 6888888777777665543332 3456667776664
|
|
| >PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=82.20 E-value=5.8 Score=35.33 Aligned_cols=101 Identities=14% Similarity=0.139 Sum_probs=65.6
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE--VALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~--~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
+|......+++-.++-.|++||.+.++.-. ++ .... .|- +.+.+..|||.+|+.||+-+=...+++-|-+.
T Consensus 7 lAd~a~~~~~~l~si~hYQqAls~se~~~~-~~--~~el----~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~ 79 (140)
T PF10952_consen 7 LADQAFKEADPLRSILHYQQALSLSEEIDE-SN--EIEL----EDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK 79 (140)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhcc-cc--cccH----HHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
Confidence 345556788999999999999999775421 11 1110 111 23446679999999999999999988877654
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 304 TEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 304 ~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
- -++=|.=|.+-- .+|..-.+..+.||=-+
T Consensus 80 V-ltLiPQCp~~~C------------------~afi~sLGCCk~ALl~F 109 (140)
T PF10952_consen 80 V-LTLIPQCPNTEC------------------EAFIDSLGCCKKALLDF 109 (140)
T ss_pred H-HHhccCCCCcch------------------HHHHHhhhccHHHHHHH
Confidence 3 334455554421 12444467777777555
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.69 E-value=3 Score=42.63 Aligned_cols=61 Identities=13% Similarity=0.185 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
+.+.|.-.+.+|+.++|..+|+.||+.. |+++ ..+..+|+....-.+.-+|..+|.|||.
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlala------------------P~~p--~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALA------------------PTNP--QILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcC------------------CCCH--HHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 3344545678999999999999999881 2222 4678899999888999999999999998
Q ss_pred H
Q 013867 303 K 303 (435)
Q Consensus 303 I 303 (435)
|
T Consensus 179 i 179 (472)
T KOG3824|consen 179 I 179 (472)
T ss_pred e
Confidence 8
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.45 E-value=13 Score=36.95 Aligned_cols=95 Identities=16% Similarity=0.085 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh----------HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK----------VGVVLTCLALMFRNKAMQEHSSALLIQEGLY 345 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~----------va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly 345 (435)
.+..-|+=+..+|+|.||+..|..|+.+-+..-=.+-|- .-..|-|.+..|-..|+|-++ .
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yev---------l 250 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEV---------L 250 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHH---------H
Confidence 455668888999999999999999999988877666664 345577888888888876333 4
Q ss_pred HHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHh
Q 013867 346 RRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEAL 383 (435)
Q Consensus 346 ~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal 383 (435)
+-+-+|++ .||+..+.+.-+|-+..+-++-+||.
T Consensus 251 eh~seiL~----~~~~nvKA~frRakAhaa~Wn~~eA~ 284 (329)
T KOG0545|consen 251 EHCSEILR----HHPGNVKAYFRRAKAHAAVWNEAEAK 284 (329)
T ss_pred HHHHHHHh----cCCchHHHHHHHHHHHHhhcCHHHHH
Confidence 45556664 24665666766777766666666663
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 9e-06
Identities = 35/245 (14%), Positives = 76/245 (31%), Gaps = 26/245 (10%)
Query: 119 YESGNYVEAIEKLQKVENFKNSILGVRVAAMEA---LAGLYLQLGQDDTSSVVADKCLQL 175
++ YVEAI ++ E + A E +A Y + Q S + L +
Sbjct: 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKA-EFHFKVAEAYYHMKQTHVSMYHILQALDI 170
Query: 176 CEKHKPENYKTYGAVNSRANA--VKGLVELAHGNLESGLQ--EEEGCTGSAALSY---GE 228
+ H + +T ++ A + A +LE+ L+ + A+S
Sbjct: 171 YQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN 230
Query: 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG 288
+ + +A + +QK +V E+ L F L G
Sbjct: 231 SYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL---------------FGLSWTLCKAG 275
Query: 289 NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRA 348
A + + L + ++ + L + ++ + ++ L+
Sbjct: 276 QTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYI 335
Query: 349 LEFLK 353
+
Sbjct: 336 EACAR 340
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 34/265 (12%), Positives = 83/265 (31%), Gaps = 45/265 (16%)
Query: 119 YESGNYVEAIEKLQKVENFKNSILGVRVAAMEA---LAGLYLQLGQDDTSSVVADKCLQL 175
+ Y+ AI+ +K E+ + R+ E ++ Y + Q S A + ++
Sbjct: 114 LDQREYLSAIKFFKKAESKLIFV-KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI 172
Query: 176 CEKHKPENYKTYGAVNSRANA--VKGLVELAHGNLESGLQ--EEEGCTGSAALSY---GE 228
++H+ N + + A E A + + E E + G
Sbjct: 173 YKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL 232
Query: 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG 288
++ + A ++++ I V E + + + + Q+ +G
Sbjct: 233 CKNSQSQYEDAIPYFKRAIAVFEESNILPSL--PQAYFL------------ITQIHYKLG 278
Query: 289 NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN-KAMQEHSSALLIQE----- 342
A E ++ + +++ + L L L + +A+Q L +
Sbjct: 279 KIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADL 338
Query: 343 --------------GLYRRALEFLK 353
+++A +
Sbjct: 339 EDFAIDVAKYYHERKNFQKASAYFL 363
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 6e-04
Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 9/147 (6%)
Query: 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR--VAAMEALAGLYLQLGQDDTS 165
G +L + Y +AI ++ + A + ++ +LG+ D +
Sbjct: 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA 283
Query: 166 SVVADKCLQLCEKHKPENY----KTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGS 221
K + +K Y + ++ + ++ LES +
Sbjct: 284 HEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD-EEAIQGFFDFLES--KMLYADLED 340
Query: 222 AALSYGEYLHATRNFLLAKKFYQKVIE 248
A+ +Y H +NF A ++ KV +
Sbjct: 341 FAIDVAKYYHERKNFQKASAYFLKVEQ 367
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 43/259 (16%), Positives = 84/259 (32%), Gaps = 38/259 (14%)
Query: 111 LLAMSTLLYESGNYVEAIEKLQKV-ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVA 169
+++++ Y + ++ + V E + + G ++L + + ++
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPF-----HASCLPVHIGTLVELNKANELFYLS 79
Query: 170 DKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEY 229
K + L P N ++ AV V E A L E+ G A ++YG
Sbjct: 80 HKLVDL----YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY-GPAWIAYGHS 134
Query: 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSD-MNTLGSCNMALEEVALAATF---------- 278
A Y ++ K M +G LA F
Sbjct: 135 FAVESEHDQAMAAYFTAAQL---MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE 191
Query: 279 ------ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH-PKVGVVLTCLALMFRNKAM 331
+G + G + AE+ L K + + K +L L + R +
Sbjct: 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK--L 249
Query: 332 QEHSSALLIQEGLYRRALE 350
++++ AL +R+AL
Sbjct: 250 KKYAEALD----YHRQALV 264
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 36/220 (16%), Positives = 69/220 (31%), Gaps = 26/220 (11%)
Query: 64 QMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQL--------AESWRGISLLAMS 115
Q ++ L + Q + Q ++ ++ ++
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61
Query: 116 TLLYESGNYVEAIEKLQKV-ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQ 174
++ NY +A +++ + N+ V +EA A + + GQ+ + + +K LQ
Sbjct: 62 LAYKKNRNYDKAYLFYKELLQKAPNN-----VDCLEACAEMQVCRGQEKDALRMYEKILQ 116
Query: 175 LCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSY--GEYLHA 232
L + +N N E LE+ ++ T Y G
Sbjct: 117 L----EADNLAAN---IFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLF 169
Query: 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV 272
T + A+ QKVI TL +EV
Sbjct: 170 TTRYEKARNSLQKVILR---FPSTEAQKTLDKILRIEKEV 206
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 7e-04
Identities = 17/138 (12%), Positives = 44/138 (31%), Gaps = 5/138 (3%)
Query: 51 NRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGIS 110
N + +P Q + + A Y +L L++ L+ Q +
Sbjct: 100 NELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID--VYQNLYI 157
Query: 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSI---LGVRVAAMEALAGLYLQLGQDDTSSV 167
A++ + E+G + I+ +++ ++ V A + + S
Sbjct: 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217
Query: 168 VADKCLQLCEKHKPENYK 185
+K +++ +
Sbjct: 218 QVNKAIEISCRINSMALI 235
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 7e-04
Identities = 61/409 (14%), Positives = 125/409 (30%), Gaps = 110/409 (26%)
Query: 51 NRINGLNSNPVVLQMINYALSHARSQKSDESYSQG-------MLVLEQCL-STQPSDGQL 102
+ I P + Y R ++ +++ L L Q L +P+
Sbjct: 96 SPIKTEQRQPS-MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA---- 150
Query: 103 AESWRGISLLAMSTLLYESGNYVEAIEKLQ--KVE-NFKNSILGVRVAAMEALAGLYLQL 159
+ + + + SG A++ KV+ I +L L
Sbjct: 151 ----KNVLIDGVLG----SGKTWVALDVCLSYKVQCKMDFKIF-------------WLNL 189
Query: 160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCT 219
++ V + +L + P N+ SR++ N++ + +
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDP-NW------TSRSDHSS--------NIKLRIHSIQ--- 231
Query: 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL----GSC-------NMA 268
L R L +K Y+ + VL + + SC
Sbjct: 232 --------AEL---RRLLKSKP-YENCLLVLL---NVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 269 LEEVALAATFALGQLEAHMGNFGDAE--EILTRTL-TKTEELFGSHHPKVGVVLTCLAL- 324
+ + AAT L+ H E +L + L + ++L P+ + L
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-----PREVLTTNPRRLS 331
Query: 325 MFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLE--SEGVETKVDRTDIVALARGGYAEA 382
+ A I++GL + K + + +E+ ++ + A R + +
Sbjct: 332 II----------AESIRDGLAT--WDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMF-DR 377
Query: 383 LSV-QQNRKDEGERMKR-WAEAAWRNRRVSLAEALNFS--EPSNKPLVI 427
LSV + + W + + V + + +S E K I
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 9e-04
Identities = 42/295 (14%), Positives = 79/295 (26%), Gaps = 77/295 (26%)
Query: 76 QKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135
K+DES+++ + E+ L D +L E ISL + + + A E ++K
Sbjct: 206 DKADESFTKAARLFEEQLDKNNEDEKLKEK-LAISLEHTGIFKFLKNDPLGAHEDIKKAI 264
Query: 136 NFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEK---HKPENYKTYGAVNS 192
RV + +A + + +K N Y
Sbjct: 265 ELFP-----RVNSYIYMALIMADRNDS-------TEYYNYFDKALKLDSNNSSVY---YH 309
Query: 193 RANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIE---- 248
R L N + A K + K E
Sbjct: 310 RGQMNFIL-----QNYDQ----------------------------AGKDFDKAKELDPE 336
Query: 249 ----------VLAEQKDFSDMNTLGSCNMALE---EVALAATFALGQLEAHMGNFGDAEE 295
+ + F D + A E F ++ +F A +
Sbjct: 337 NIFPYIQLACLAYRENKFDD--CETLFSEAKRKFPEAPEVPNF-FAEILTDKNDFDKALK 393
Query: 296 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 350
+ + E + + ++ L+ RN ++ A L +A +
Sbjct: 394 QYDLAI-ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT----NLLEKASK 443
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 435 | |||
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.94 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.93 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.93 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.93 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 99.91 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.91 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.9 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.89 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 99.89 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.88 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.88 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.88 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.87 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 99.87 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.87 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.87 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.87 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 99.84 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.84 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.84 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.84 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.81 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.78 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.78 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.78 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.77 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.77 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.77 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.77 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.76 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.76 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.76 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.75 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.75 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.75 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.74 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.73 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.73 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.72 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.71 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.71 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.71 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.71 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.69 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.68 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.68 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.68 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.68 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.66 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.64 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.63 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.63 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.62 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.62 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.6 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.6 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.6 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.59 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.59 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.59 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.54 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.54 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.54 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.5 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.49 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.47 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.46 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.45 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.45 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.45 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.43 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.43 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.43 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.42 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.42 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.41 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.4 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.39 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.38 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.36 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.36 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.35 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.35 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.34 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.34 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.33 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.32 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.29 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.26 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.25 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.24 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.24 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.24 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.24 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.23 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.23 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.23 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.22 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.22 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.21 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.21 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.2 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.2 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.19 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.18 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.18 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.17 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.17 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.16 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.15 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.14 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.14 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.14 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.14 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.13 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.13 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.12 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.12 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.11 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.11 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.1 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.09 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.09 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.08 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.08 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.07 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.05 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.05 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.05 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.05 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.03 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.03 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.02 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.02 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.02 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.0 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.95 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.95 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.94 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.94 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.89 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.89 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.89 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.88 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.87 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.87 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.86 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.85 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.84 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.81 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.81 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.79 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.77 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.75 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.75 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.73 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.72 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.71 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.68 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.66 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.65 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.64 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.64 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.48 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.37 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.35 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.32 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.31 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.25 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.17 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.16 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.07 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.06 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.03 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.01 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 97.98 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.98 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.83 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.68 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.59 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.5 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.45 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.39 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.36 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.31 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.22 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.21 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.12 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 96.92 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 96.61 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.61 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.59 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.52 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 95.96 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.85 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.83 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 95.81 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 95.79 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 95.66 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.44 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.44 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 93.87 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 92.54 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.18 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 91.52 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 91.48 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.47 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.65 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 90.03 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 88.92 | |
| 4a5x_A | 86 | MITD1, MIT domain-containing protein 1; protein tr | 87.91 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 87.73 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 86.8 | |
| 2br9_A | 234 | 14-3-3E, 14-3-3 protein epsilon; cell regulator pr | 84.87 | |
| 2npm_A | 260 | 14-3-3 domain containing protein; cell regulator p | 84.57 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 83.22 | |
| 1o9d_A | 260 | 14-3-3-like protein C; protein-binding, fusicoccin | 83.14 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 82.99 | |
| 2o8p_A | 227 | 14-3-3 domain containing protein; signaling protei | 82.7 | |
| 2br9_A | 234 | 14-3-3E, 14-3-3 protein epsilon; cell regulator pr | 82.62 | |
| 3iqu_A | 236 | 14-3-3 protein sigma; signal transuction, nucleus, | 82.6 | |
| 3uzd_A | 248 | 14-3-3 protein gamma; structural genomics, SGC, st | 82.59 | |
| 3ubw_A | 261 | 14-3-3E, 14-3-3 protein epsilon; adapter protein, | 81.89 |
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-27 Score=245.38 Aligned_cols=143 Identities=8% Similarity=0.052 Sum_probs=127.7
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV-ALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~-~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
+.-+.+||+|++|+++|+++|+|.++. +| ++|+ ++.+++|||.+|..||+|++|+++|+|+|+|++
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~--------lg-----~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~ 382 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPV--------FA-----DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM 382 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTT--------BC-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHh--------cC-----CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 445789999999999999999997554 44 2233 445889999999999999999999999999999
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc-CCCCCCCchhhhhccHHHHHHHhcCHHHHhh
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGVETKVDRTDIVALARGGYAEALS 384 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k-~~~~~hp~~a~~l~nla~~~~a~G~yaeal~ 384 (435)
++||++||+||.+++|||.+|..||+|++| +++|+|||+|++ ++|++||+|+..+++++.++..+|+|.+|+.
T Consensus 383 ~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA------~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~ 456 (490)
T 3n71_A 383 KLYHHNNAQLGMAVMRAGLTNWHAGHIEVG------HGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF 456 (490)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998776 999999999995 7899999999999999999999999988877
Q ss_pred Hhhh
Q 013867 385 VQQN 388 (435)
Q Consensus 385 ~~~~ 388 (435)
.+..
T Consensus 457 ~~~~ 460 (490)
T 3n71_A 457 MYHK 460 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7644
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-24 Score=200.89 Aligned_cols=243 Identities=15% Similarity=0.197 Sum_probs=198.8
Q ss_pred cCCCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 53 INGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQ 132 (435)
Q Consensus 53 ~~g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ 132 (435)
..|+++|..+..+.++|..+.. .|+|++|+.+|++++.+..+..++++|..+.++.++|.+|..+|+|++|++.|+
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 93 (311)
T 3nf1_A 18 GGGYEIPARLRTLHNLVIQYAS----QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLN 93 (311)
T ss_dssp SSCTTSCHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3599999999999999999953 689999999999999999888888999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccc
Q 013867 133 KVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGL 212 (435)
Q Consensus 133 ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~ 212 (435)
+++.+.++.+ +++.
T Consensus 94 ~al~~~~~~~-----------------~~~~------------------------------------------------- 107 (311)
T 3nf1_A 94 DALAIREKTL-----------------GKDH------------------------------------------------- 107 (311)
T ss_dssp HHHHHHHHHH-----------------CTTC-------------------------------------------------
T ss_pred HHHHHHHHHh-----------------CCCC-------------------------------------------------
Confidence 9855432221 1110
Q ss_pred cccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHH
Q 013867 213 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD 292 (435)
Q Consensus 213 ~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~e 292 (435)
+....+..++|.+|..+|+|++|+.+|++++++.++..+ .++ |. ...+++++|.+|..+|+|++
T Consensus 108 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~---------~~--~~~~~~~la~~~~~~~~~~~ 171 (311)
T 3nf1_A 108 ----PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG-KDH---------PD--VAKQLNNLALLCQNQGKYEE 171 (311)
T ss_dssp ----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-TTC---------HH--HHHHHHHHHHHHHTTTCHHH
T ss_pred ----hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC-CCC---------hH--HHHHHHHHHHHHHHcCCHHH
Confidence 111234455678889999999999999999999765432 111 11 34578899999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC------------------
Q 013867 293 AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA------------------ 354 (435)
Q Consensus 293 Ae~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~------------------ 354 (435)
|+.+|++++.+.++.+|+++|....++.++|.+|..+|++++| +.+|++++++...
T Consensus 172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 245 (311)
T 3nf1_A 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA------ETLYKEILTRAHEREFGSVDDENKPIWMHAE 245 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHHHHHC------CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 9999999999999999999999999999999999999998876 8999999987421
Q ss_pred ------------------------CCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 355 ------------------------PPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 355 ------------------------~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
....+|+.+..+.+++.++..+|+|++|+..+.
T Consensus 246 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 246 EREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE 302 (311)
T ss_dssp HHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 122567777788889999999999988877663
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-25 Score=231.40 Aligned_cols=146 Identities=17% Similarity=0.102 Sum_probs=128.2
Q ss_pred CChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013867 77 KSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156 (435)
Q Consensus 77 ~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~ 156 (435)
.++|+|++|+.+|+++|+|+++.+|++||+|+.+++|||.+|.+||+|++|+++|+++++|.++
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~---------------- 383 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMK---------------- 383 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH----------------
Confidence 3789999999999999999999999999999999999999999999999999988887443211
Q ss_pred HhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhch
Q 013867 157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNF 236 (435)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y 236 (435)
.+|.+||+
T Consensus 384 ----------------------------------------------~lG~~Hp~-------------------------- 391 (490)
T 3n71_A 384 ----------------------------------------------LYHHNNAQ-------------------------- 391 (490)
T ss_dssp ----------------------------------------------HSCTTCHH--------------------------
T ss_pred ----------------------------------------------HcCCCCHH--------------------------
Confidence 23333321
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHH
Q 013867 237 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG 316 (435)
Q Consensus 237 ~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va 316 (435)
++.+++|||.+|..||+|++|+++|+|||+|+++++|++||+|+
T Consensus 392 ------------------------------------~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 435 (490)
T 3n71_A 392 ------------------------------------LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITK 435 (490)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 23468899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 317 VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 317 ~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.++++|+..+..+++|++| |.+|+++.+-.
T Consensus 436 ~~~~~l~~~~~e~~~~~~a------e~~~~~~~~~~ 465 (490)
T 3n71_A 436 DLEAMRMQTEMELRMFRQN------EFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 9999999999999997766 99999998755
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-24 Score=198.55 Aligned_cols=222 Identities=15% Similarity=0.154 Sum_probs=183.4
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
+.|++++|+.+|++++++.++.++.++|..+.++.+||.+|..+|+|++|++.|++++.+.++.+
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------- 77 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL--------------- 77 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc---------------
Confidence 67899999999999999999999999999999999999999999999999999999855432221
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFL 237 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~ 237 (435)
|++ + +....+..++|.+|..+|+|+
T Consensus 78 --~~~---------------------------------------------~--------~~~~~~~~~l~~~~~~~g~~~ 102 (283)
T 3edt_B 78 --GKD---------------------------------------------H--------PAVAATLNNLAVLYGKRGKYK 102 (283)
T ss_dssp --CTT---------------------------------------------C--------HHHHHHHHHHHHHHHTTTCHH
T ss_pred --CCc---------------------------------------------c--------hHHHHHHHHHHHHHHHhccHH
Confidence 111 0 112234556788899999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 013867 238 LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV 317 (435)
Q Consensus 238 eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~ 317 (435)
+|+.+|++++++.++..+ .++ |. ...++.+||.+|..+|+|++|+.+|++++.+.++.+|+++|..+.
T Consensus 103 ~A~~~~~~al~~~~~~~~-~~~---------~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 103 EAEPLCKRALEIREKVLG-KFH---------PD--VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTC---------HH--HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-CCC---------hH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999765433 111 11 345788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc------------------------------------------CC
Q 013867 318 VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK------------------------------------------AP 355 (435)
Q Consensus 318 ~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k------------------------------------------~~ 355 (435)
++.+||.+|..+|++++| +.+|++++++.. ..
T Consensus 171 ~~~~la~~~~~~g~~~~A------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDA------ETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp HHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred HHHHHHHHHHHcCCHHHH------HHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 999999999999998876 899999998842 22
Q ss_pred CCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 356 PLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
+.++|+....+.+++.++..+|+|++|+..+.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 276 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLED 276 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34677777788888999999999988877663
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-24 Score=225.17 Aligned_cols=120 Identities=8% Similarity=0.043 Sum_probs=106.3
Q ss_pred HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013867 232 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV-ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 310 (435)
Q Consensus 232 ~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~-~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~ 310 (435)
.+|+|++|+++|+++|+|.++. +| |+|+ ++.+++|||.+|..||+|++|+++|+|+|+|++++||+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~--------lg-----~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~ 376 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSV--------FE-----DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV 376 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTT--------BC-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred hccCHHHHHHHHHHHHHHhhCc--------cC-----hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC
Confidence 4789999999999999997554 44 2333 34588999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc-CCCCCCCchhhhhccHH
Q 013867 311 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGVETKVDRTD 370 (435)
Q Consensus 311 ~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k-~~~~~hp~~a~~l~nla 370 (435)
+||+||.+|+|||.+|..||+|++| +++|+|||+|++ ++|++||.|+...+|+.
T Consensus 377 ~Hp~~a~~l~nLa~~~~~qg~~~eA------~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 377 YSLNVASMWLKLGRLYMGLENKAAG------EKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccCHHHH------HHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999999999999998776 999999999995 78999999997766553
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-22 Score=195.05 Aligned_cols=299 Identities=16% Similarity=0.142 Sum_probs=221.4
Q ss_pred CChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 57 ~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
..+..+..+...|..+.+ .|+|++|+.+|++++.+.. .+.+..+..+.++|.+|..+|+|++|++.|++++.
T Consensus 43 ~~~~~~~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (411)
T 4a1s_A 43 GGSSMCLELALEGERLCN----AGDCRAGVAFFQAAIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114 (411)
T ss_dssp -CHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCC----SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHhcc----cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 347888899999998853 6899999999999998742 23345678999999999999999999999999998
Q ss_pred hhhhhH--HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCC-------
Q 013867 137 FKNSIL--GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN------- 207 (435)
Q Consensus 137 i~e~~L--~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~------- 207 (435)
+.++.- .....++..++..|..+|.+..|...+..++.+...... ....+..+... +.+....|+
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l-----~~~~~~~g~~~~~~~~ 188 (411)
T 4a1s_A 115 LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-RLSEGRALYNL-----GNVYHAKGKHLGQRNP 188 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHH-----HHHHHHHHHHHHHHST
T ss_pred HHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHH-----HHHHHHcCcccccccc
Confidence 765431 122446778888899999999998888887777544331 01111111110 011111122
Q ss_pred ----------Ccccccc------------cccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 013867 208 ----------LESGLQE------------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC 265 (435)
Q Consensus 208 ----------h~~a~~~------------~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~ 265 (435)
++.|... .++....+..++|.+|..+|+|++|+.+|++++++..+...
T Consensus 189 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 258 (411)
T 4a1s_A 189 GKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD---------- 258 (411)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC----------
Confidence 2211110 01334456777899999999999999999999999643211
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 013867 266 NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLY 345 (435)
Q Consensus 266 ~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly 345 (435)
......+++++|.+|..+|+|++|+.+|++++.+..+. .+++..+.++.++|.+|..+|++++| +.+|
T Consensus 259 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~ 326 (411)
T 4a1s_A 259 ----RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFNTA------IEYH 326 (411)
T ss_dssp ----HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHH
T ss_pred ----cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHH------HHHH
Confidence 01133477899999999999999999999999999986 66788899999999999999998876 8999
Q ss_pred HHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH
Q 013867 346 RRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE 392 (435)
Q Consensus 346 ~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e 392 (435)
++++++.+.. .+++.....+.+++.++..+|+|++|+..+.+-..-
T Consensus 327 ~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 327 NRHLAIAQEL-GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999998643 234556778889999999999999998877543333
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-21 Score=189.61 Aligned_cols=312 Identities=14% Similarity=0.079 Sum_probs=224.8
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
..+..+...|..+. ..|+|++|+.+|++++.+.. .+.+..+.++.++|.+|..+|+|++|++.|++++.+.+
T Consensus 7 ~~~~~l~~~g~~~~----~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 78 (406)
T 3sf4_A 7 ASCLELALEGERLC----KSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR 78 (406)
T ss_dssp CCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCC----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HhccHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 34566778888874 36899999999999998742 23445688999999999999999999999999988765
Q ss_pred hhHH--HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCC----------
Q 013867 140 SILG--VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN---------- 207 (435)
Q Consensus 140 ~~L~--i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~---------- 207 (435)
+.-. ....++..++..+..+|.++.|....+.++.+....... ...+..+... +.+....|+
T Consensus 79 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l-----~~~~~~~g~~~~~~~~~~~ 152 (406)
T 3sf4_A 79 TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-VGEARALYNL-----GNVYHAKGKSFGCPGPQDV 152 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHH-----HHHHHHHHHTCC-------
T ss_pred hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-cchHHHHHHH-----HHHHHHcCCcccccccchh
Confidence 4311 123467778888999999999988888877776543310 0000111000 111111122
Q ss_pred ----------Ccccccc------------cccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 013867 208 ----------LESGLQE------------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC 265 (435)
Q Consensus 208 ----------h~~a~~~------------~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~ 265 (435)
++.|... ..+....+..++|.+|..+|+|++|+.+|++++++..+...
T Consensus 153 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 222 (406)
T 3sf4_A 153 GEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------- 222 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC----------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC----------
Confidence 1111100 02334556778899999999999999999999999643110
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 013867 266 NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLY 345 (435)
Q Consensus 266 ~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly 345 (435)
......+++++|.+|..+|+|++|+.+|++++.+..+. .+++..+.++.++|.+|..+|++++| +..|
T Consensus 223 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~ 290 (406)
T 3sf4_A 223 ----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKA------IDYH 290 (406)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHH
T ss_pred ----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHHHH------HHHH
Confidence 01133477899999999999999999999999999875 46788899999999999999998776 8999
Q ss_pred HHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH----------HHHHHHHHHHHhcccc
Q 013867 346 RRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE----------GERMKRWAEAAWRNRR 408 (435)
Q Consensus 346 ~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e----------ae~~~~~a~~~~~~~r 408 (435)
++++++.+.. .+++.....+.+++.++..+|+|++|+..+.+-... ++.+..++..++..++
T Consensus 291 ~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 291 LKHLAIAQEL-NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 9999998653 234556778889999999999999998876443322 3444456666654443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-20 Score=177.76 Aligned_cols=290 Identities=16% Similarity=0.107 Sum_probs=211.9
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+..+...|..+. ..|+|++|+.+|++++.+.. .+.+..+..+.++|.+|..+|+|++|++.+++++.+.++.
T Consensus 5 ~~~l~~~g~~~~----~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (338)
T 3ro2_A 5 CLELALEGERLC----KSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI 76 (338)
T ss_dssp HHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCC----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HhccHHHHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc
Confidence 446666777774 36899999999999998742 2344568899999999999999999999999998876543
Q ss_pred HH--HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCC------------
Q 013867 142 LG--VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN------------ 207 (435)
Q Consensus 142 L~--i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~------------ 207 (435)
-. ....++..++..+..+|.+..|......++.+...... ....+..+... +.+....|+
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3ro2_A 77 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNL-----GNVYHAKGKSFGCPGPQDTGE 150 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHH-----HHHHHHHHHTSSSSSCC----
T ss_pred cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHH-----HHHHHHcCcccccchhhhhhh
Confidence 11 12345677888899999999998888888777654331 00001111100 011111122
Q ss_pred --------Ccccccc------------cccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccc
Q 013867 208 --------LESGLQE------------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 267 (435)
Q Consensus 208 --------h~~a~~~------------~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~ 267 (435)
++.|... ..+....+..++|.+|..+|+|++|+.+|++++++..+...
T Consensus 151 ~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------ 218 (338)
T 3ro2_A 151 FPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD------------ 218 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC------------
Confidence 1111100 01333456677889999999999999999999999643211
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 013867 268 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRR 347 (435)
Q Consensus 268 ~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~r 347 (435)
......++.++|.+|..+|+|++|+.+|++++.+..+. .+++..+.++.++|.+|..+|++++| ...|++
T Consensus 219 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~ 288 (338)
T 3ro2_A 219 --KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKA------IDYHLK 288 (338)
T ss_dssp --HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHHHH------HHHHHH
Confidence 11133477899999999999999999999999999875 56788899999999999999998776 899999
Q ss_pred HHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 348 ALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 348 AL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
++++.... .+.+.....+.+++.++..+|++++|+..+..
T Consensus 289 a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 289 HLAIAQEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhc-CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99998543 23445677788999999999999999887743
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-23 Score=212.94 Aligned_cols=129 Identities=19% Similarity=0.138 Sum_probs=113.7
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013867 228 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL 307 (435)
Q Consensus 228 ~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~ 307 (435)
.-+..+|+|++|+++|+++|+|.++ .+|+.| |. ++.+++|||.+|..||+|++|+++|+|+|+|++++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~--------~lg~~h--~~--~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~ 362 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSE--------RLPDIN--IY--QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF 362 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSC--------CCCTTS--HH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccC--------cCCccc--hH--HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Confidence 3466899999999999999999533 455322 21 44588999999999999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc-CCCCCCCchhhhhccHHHHHH
Q 013867 308 FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGVETKVDRTDIVAL 374 (435)
Q Consensus 308 lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k-~~~~~hp~~a~~l~nla~~~~ 374 (435)
||++||+||.+|+|||.+|..||+|++| +++|+||++|++ ++|++||.|+..++|++.+..
T Consensus 363 lg~~Hp~~a~~l~nLa~~~~~~g~~~eA------~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 363 FPGSHPVRGVQVMKVGKLQLHQGMFPQA------MKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHH------HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999998776 999999999995 689999999999998887764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-21 Score=179.75 Aligned_cols=208 Identities=17% Similarity=0.199 Sum_probs=171.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 54 NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 54 ~g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~r 133 (435)
.++++|..+..+.++|..+.. .|+|++|+.+|++++.+.++.+|+++|..+.++++||.+|..+|+|++|++.|++
T Consensus 35 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 110 (283)
T 3edt_B 35 SGHDHPDVATMLNILALVYRD----QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR 110 (283)
T ss_dssp HCSSSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 478999999999999999953 6899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccc
Q 013867 134 VENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQ 213 (435)
Q Consensus 134 al~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~ 213 (435)
++.+.++.. +++ +
T Consensus 111 al~~~~~~~-----------------~~~---------------------------------------------~----- 123 (283)
T 3edt_B 111 ALEIREKVL-----------------GKF---------------------------------------------H----- 123 (283)
T ss_dssp HHHHHHHHH-----------------CTT---------------------------------------------C-----
T ss_pred HHHHHHHHc-----------------CCC---------------------------------------------C-----
Confidence 855432221 111 0
Q ss_pred ccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH
Q 013867 214 EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 214 ~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA 293 (435)
+....+..++|.+|..+|+|++|+.+|++++++.++..+ .++ |. ...++.+||.+|..+|+|++|
T Consensus 124 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~---------~~--~~~~~~~la~~~~~~g~~~~A 188 (283)
T 3edt_B 124 ---PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG-PDD---------PN--VAKTKNNLASCYLKQGKYQDA 188 (283)
T ss_dssp ---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC-TTC---------HH--HHHHHHHHHHHHHHHTCHHHH
T ss_pred ---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-CCC---------HH--HHHHHHHHHHHHHHcCCHHHH
Confidence 112234556788899999999999999999999765433 111 11 335778999999999999999
Q ss_pred HHHHHHHHHHHHH-----------------------------------------hhCCCChhHHHHHHHHHHHHHHhhhh
Q 013867 294 EEILTRTLTKTEE-----------------------------------------LFGSHHPKVGVVLTCLALMFRNKAMQ 332 (435)
Q Consensus 294 e~l~~rAL~I~e~-----------------------------------------~lG~~HP~va~~L~nLA~ly~~qG~~ 332 (435)
+.+|++++.+..+ .++++||..+.++.+||.+|..+|++
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 268 (283)
T 3edt_B 189 ETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKL 268 (283)
T ss_dssp HHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 9999999998543 34568999999999999999999998
Q ss_pred hhhhhhHHHHHHHHHHHHHhc
Q 013867 333 EHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 333 e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
++| +.+|++++++.|
T Consensus 269 ~~A------~~~~~~al~~~k 283 (283)
T 3edt_B 269 EAA------HTLEDCASRNRK 283 (283)
T ss_dssp HHH------HHHHHHHHTTC-
T ss_pred HHH------HHHHHHHHHhhC
Confidence 876 899999998864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-20 Score=185.63 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=116.2
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|....+..++|.++..+|+|++|+..|++++.+. |++ ..++++||.+|..+|++++|+..
T Consensus 200 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------p~~--~~~~~~l~~~~~~~g~~~~A~~~ 259 (388)
T 1w3b_A 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS------------------PNH--AVVHGNLACVYYEQGLIDLAIDT 259 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC------------------TTC--HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------------------cCC--HHHHHHHHHHHHHcCCHHHHHHH
Confidence 4445566667777777777777777777777760 111 13567899999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
|++++++ +|+...+++++|.+|..+|++++| +.+|++++++. |+....+++++.++..+
T Consensus 260 ~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~-------p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 260 YRRAIEL--------QPHFPDAYCNLANALKEKGSVAEA------EDCYNTALRLC-------PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHH------HHHHHHHHHHC-------TTCHHHHHHHHHHHHTT
T ss_pred HHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhC-------cccHHHHHHHHHHHHHc
Confidence 9999874 344455788999999999997766 88899998874 33344677889999999
Q ss_pred cCHHHHhhHhhhhhh----HHHHHHHHHHHHhcccchhHHHHh
Q 013867 377 GGYAEALSVQQNRKD----EGERMKRWAEAAWRNRRVSLAEAL 415 (435)
Q Consensus 377 G~yaeal~~~~~r~~----eae~~~~~a~~~~~~~r~~l~~~l 415 (435)
|+|++|+..+.+-.. -.+.+...+..+++.+++..|..+
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999887643322 256677788888888887776543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-20 Score=184.55 Aligned_cols=273 Identities=14% Similarity=0.043 Sum_probs=196.3
Q ss_pred CCCCh-HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 55 GLNSN-PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 55 g~~~~-~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~r 133 (435)
.+++| ..+..+.++|..+.+ .|+|++|+.+|++++.+. |..+.+++++|.+|..+|+|++|++.|++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 57 HTENPFKDWPGAFEEGLKRLK----EGDLPVTILFMEAAILQD--------PGDAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp CSSCTTTTCTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCCcccchhHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444 335567888888853 689999999999999764 55678899999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch------------hc-hhhHHHHHHHHHHH
Q 013867 134 VENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY------------KT-YGAVNSRANAVKGL 200 (435)
Q Consensus 134 al~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~------------~e-aeal~~~a~Ai~~~ 200 (435)
++.+.+.. ..++.+++..+..+|.+..|....+.++.+........+ +. .........|+...
T Consensus 125 al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 125 CLELQPNN----LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp HHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHH
T ss_pred HHhcCCCC----HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 98876543 335677888899999999988888877765322110000 00 00011112222211
Q ss_pred HHHhcCCCcccccccccc--hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHH
Q 013867 201 VELAHGNLESGLQEEEGC--TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF 278 (435)
Q Consensus 201 ~~~lgg~h~~a~~~~~~~--~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~ 278 (435)
.+.+.- .|. ...+..++|.+|..+|+|++|+.+|++++++. + . ...+++
T Consensus 201 ~~al~~---------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p-~-----------~~~~~~ 251 (365)
T 4eqf_A 201 LEAAHQ---------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--------P-E-----------DYSLWN 251 (365)
T ss_dssp HHHHHH---------SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHH
T ss_pred HHHHHh---------CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------C-C-----------CHHHHH
Confidence 111111 122 34677889999999999999999999999981 1 1 124678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC-CCC
Q 013867 279 ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA-PPL 357 (435)
Q Consensus 279 nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~-~~~ 357 (435)
+||.+|..+|+|++|+..|++++.+ +|+...++.+||.+|..+|++++| ...|++++++... .++
T Consensus 252 ~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~~~~~~~ 317 (365)
T 4eqf_A 252 RLGATLANGDRSEEAVEAYTRALEI--------QPGFIRSRYNLGISCINLGAYREA------VSNFLTALSLQRKSRNQ 317 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHH------HHHHHHHHHHHHCC---
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhCcccCCC
Confidence 9999999999999999999999998 678889999999999999998776 8999999999943 355
Q ss_pred CCCch----hhhhccHHHHHHHhcCHHHHhhHh
Q 013867 358 ESEGV----ETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 358 ~hp~~----a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
++++. .....+++.++...|+++.+....
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 318 QQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp ---------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 55542 556678888888888887766554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-20 Score=180.26 Aligned_cols=289 Identities=18% Similarity=0.175 Sum_probs=208.7
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
.|+++.+ +..++..+. ..|++++|+.++++++.+ +|..+.++++||.+|..+|+|++|++.|+++
T Consensus 29 ~p~~~~~---~~~l~~~~~----~~~~~~~a~~~~~~a~~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 93 (388)
T 1w3b_A 29 EPDNTGV---LLLLSSIHF----QCRRLDRSAHFSTLAIKQ--------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHA 93 (388)
T ss_dssp CTTCHHH---HHHHHHHHH----HTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCHHH---HHHHHHHHH----HcCCHHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3555443 445555553 257899999999999965 4677889999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccc
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQE 214 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~ 214 (435)
+.+.+.. +.++.+++..+..+|....|......++.+. +... ...... +.+....|++++|...
T Consensus 94 l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~---~~~~~l-----~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 94 LRLKPDF----IDGYINLAAALVAAGDMEGAVQAYVSALQYN----PDLY---CVRSDL-----GNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHHCTTC----HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC----TTCT---HHHHHH-----HHHHHTTSCHHHHHHH
T ss_pred HHcCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcH---HHHHHH-----HHHHHHccCHHHHHHH
Confidence 8765543 2345667777888898888877766654431 1000 000000 0001111222222111
Q ss_pred c------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC
Q 013867 215 E------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG 288 (435)
Q Consensus 215 ~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG 288 (435)
+ +|....+..+++.+|..+|++++|+.+|++++++. + . ...+++++|.+|..+|
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~lg~~~~~~~ 217 (388)
T 1w3b_A 158 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--------P-N-----------FLDAYINLGNVLKEAR 217 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------C-C-----------cHHHHHHHHHHHHHcC
Confidence 1 24556677889999999999999999999999881 1 1 1246789999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhcc
Q 013867 289 NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDR 368 (435)
Q Consensus 289 ~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~n 368 (435)
+|++|+..|++++.+ +|+...+++++|.+|..+|++++| +..|++++++. |+......+
T Consensus 218 ~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~-------p~~~~~~~~ 276 (388)
T 1w3b_A 218 IFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLA------IDTYRRAIELQ-------PHFPDAYCN 276 (388)
T ss_dssp CTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHTC-------SSCHHHHHH
T ss_pred CHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhC-------CCCHHHHHH
Confidence 999999999999987 466677899999999999998776 89999999863 333446788
Q ss_pred HHHHHHHhcCHHHHhhHhhhhhhH----HHHHHHHHHHHhcccchhHHHHh
Q 013867 369 TDIVALARGGYAEALSVQQNRKDE----GERMKRWAEAAWRNRRVSLAEAL 415 (435)
Q Consensus 369 la~~~~a~G~yaeal~~~~~r~~e----ae~~~~~a~~~~~~~r~~l~~~l 415 (435)
++.++..+|+|++|+..+.+-... .+.+...+..+.+.+++..+..+
T Consensus 277 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (388)
T 1w3b_A 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999877443222 56677788888888887766543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=203.62 Aligned_cols=144 Identities=15% Similarity=0.088 Sum_probs=116.8
Q ss_pred CCChHHHHHHHHHHHHhh---hccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 56 LNSNPVVLQMINYALSHA---RSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQ 132 (435)
Q Consensus 56 ~~~~~vA~~m~~~a~~~~---r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ 132 (435)
|.......+|+.++.... +.....|+|++|+.+|+++|+|.++.+|++||+|+.+++|||.+|.+||+|++|+++|+
T Consensus 285 ~~~~e~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~ 364 (433)
T 3qww_A 285 PPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQ 364 (433)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 444555566665544432 22346789999999999999999999999999999999999999999999999999888
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccc
Q 013867 133 KVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGL 212 (435)
Q Consensus 133 ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~ 212 (435)
++++|.++ .+|.+||+
T Consensus 365 ~aL~i~~~--------------------------------------------------------------~lG~~Hp~-- 380 (433)
T 3qww_A 365 KIIKPYSK--------------------------------------------------------------HYPVYSLN-- 380 (433)
T ss_dssp HHHHHHHH--------------------------------------------------------------HSCSSCHH--
T ss_pred HHHHHHHH--------------------------------------------------------------HcCCCChH--
Confidence 87443221 23343321
Q ss_pred cccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHH
Q 013867 213 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD 292 (435)
Q Consensus 213 ~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~e 292 (435)
+..+++|||.+|..||+|+|
T Consensus 381 ------------------------------------------------------------~a~~l~nLa~~~~~qg~~~e 400 (433)
T 3qww_A 381 ------------------------------------------------------------VASMWLKLGRLYMGLENKAA 400 (433)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHHHHTTCHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHHhccCHHH
Confidence 22468899999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 013867 293 AEEILTRTLTKTEELFGSHHPKVGVVLTCLA 323 (435)
Q Consensus 293 Ae~l~~rAL~I~e~~lG~~HP~va~~L~nLA 323 (435)
|+++|+|||+|+++++|++||.|+...+||.
T Consensus 401 A~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 401 GEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999999999999999999999986
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-20 Score=182.76 Aligned_cols=253 Identities=12% Similarity=0.119 Sum_probs=192.0
Q ss_pred HHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH--HH
Q 013867 68 YALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG--VR 145 (435)
Q Consensus 68 ~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~--i~ 145 (435)
.|..+. ..|+|++|+.+|++++.+.++. ++++..+.++++||.+|..+|+|++|+..|++++++.++.-. ..
T Consensus 109 ~g~~~~----~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 109 RGMYEL----DQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHH----HTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHH----HhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 555553 3689999999999999987765 667789999999999999999999999999999988765421 11
Q ss_pred -HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHH
Q 013867 146 -VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAAL 224 (435)
Q Consensus 146 -vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~ 224 (435)
..++.+++..|..+|.++.|....+.++.+.... ++ ++....+..
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------~~--------~~~~~~~~~ 228 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--------------------------KQ--------PQLMGRTLY 228 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------------------TC--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--------------------------CC--------hHHHHHHHH
Confidence 2245566666666666555544444333333221 11 122345677
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 225 ~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
++|.+|..+|+|++|+.+|++|+++.++... . |. ...++++||.+|..+|+|++|..+|++|+.+.
T Consensus 229 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~---~---------~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNI---L---------PS--LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---G---------GG--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc---c---------hh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999653211 0 11 23578999999999999999999999999999
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhh
Q 013867 305 EELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALS 384 (435)
Q Consensus 305 e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~ 384 (435)
.+. ..|.....+++|+.+|..+|++ ..+++|+.+++.. ...|+......+++.++..+|+|++|+.
T Consensus 295 ~~~---~~~~~~~~~~~l~~~~~~~~~~----------~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~ 360 (383)
T 3ulq_A 295 QKA---GDVIYLSEFEFLKSLYLSGPDE----------EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASA 360 (383)
T ss_dssp HHH---TCHHHHHHHHHHHHHHTSSCCH----------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHc---CCHHHHHHHHHHHHHHhCCCcH----------HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 886 4566666689999999999984 4577777777543 4566777788899999999999999988
Q ss_pred Hhhh
Q 013867 385 VQQN 388 (435)
Q Consensus 385 ~~~~ 388 (435)
.+.+
T Consensus 361 ~~~~ 364 (383)
T 3ulq_A 361 YFLK 364 (383)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7743
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-20 Score=181.60 Aligned_cols=292 Identities=14% Similarity=0.114 Sum_probs=214.3
Q ss_pred CCCChH-HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 55 GLNSNP-VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 55 g~~~~~-vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~r 133 (435)
.|+.+. .+..+..+|..+.. .|+|++|+.+|++++.+..+. .++|..+.++.++|.+|..+|+|++|++.|++
T Consensus 39 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 112 (406)
T 3sf4_A 39 GTEDLKTLSAIYSQLGNAYFY----LHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112 (406)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444 57788889988853 689999999999999987665 56789999999999999999999999999999
Q ss_pred HHHhhhhhHH--HHHHHHHHHHHHHHhcCC--------------------CcchHHHHHHHHHHHHhcCCCchhchhhHH
Q 013867 134 VENFKNSILG--VRVAAMEALAGLYLQLGQ--------------------DDTSSVVADKCLQLCEKHKPENYKTYGAVN 191 (435)
Q Consensus 134 al~i~e~~L~--i~vaale~L~g~~~~~g~--------------------~~~A~~~~~~~~~l~~~~~~~~~~eaeal~ 191 (435)
++.+.++.-. ....++.+++..+..+|. +..|..+...++.+...... ....+..+
T Consensus 113 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~- 190 (406)
T 3sf4_A 113 HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGD-RAAQGRAF- 190 (406)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHH-
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHH-
Confidence 9988765422 123356777888888888 77777777776666544321 00000111
Q ss_pred HHHHHHHHHHHHhcCCCccccccc------------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCC
Q 013867 192 SRANAVKGLVELAHGNLESGLQEE------------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM 259 (435)
Q Consensus 192 ~~a~Ai~~~~~~lgg~h~~a~~~~------------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~ 259 (435)
...+.+....|+++.|...+ .+....+..++|.+|..+|+|++|+.+|++++++..+...
T Consensus 191 ----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 262 (406)
T 3sf4_A 191 ----GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---- 262 (406)
T ss_dssp ----HHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred ----HHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC----
Confidence 01111122223333322111 1223346677899999999999999999999999643210
Q ss_pred CCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhH
Q 013867 260 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALL 339 (435)
Q Consensus 260 ~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~ 339 (435)
......++.++|.+|..+|+|++|+.+|++++.+..+. .+++..+.++.++|.+|..+|++++|
T Consensus 263 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A---- 326 (406)
T 3sf4_A 263 ----------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGRACWSLGNAYTALGNHDQA---- 326 (406)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHH----
T ss_pred ----------chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHcCCHHHH----
Confidence 11133577899999999999999999999999999886 35788999999999999999998776
Q ss_pred HHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHH
Q 013867 340 IQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAE 381 (435)
Q Consensus 340 ~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yae 381 (435)
...|++++++.+..+ +.+.....+.+++.++...|+..+
T Consensus 327 --~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 327 --MHFAEKHLEISREVG-DKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp --HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred --HHHHHHHHHHHHHhc-CCcchhHHHHHHHHHHHHhhHhHH
Confidence 899999999997543 334567778889999999887643
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-20 Score=172.69 Aligned_cols=205 Identities=19% Similarity=0.218 Sum_probs=169.1
Q ss_pred cCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q 013867 96 QPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQL 175 (435)
Q Consensus 96 ~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l 175 (435)
..+..|++||..+.++.++|..|..+|+|++|+.+|++++.+.++.. +++.
T Consensus 15 ~~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-----------------~~~~------------ 65 (311)
T 3nf1_A 15 YFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-----------------GHDH------------ 65 (311)
T ss_dssp SCSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------CSSS------------
T ss_pred cccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc-----------------CCCC------------
Confidence 34568899999999999999999999999999999999855432210 1110
Q ss_pred HHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcc
Q 013867 176 CEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD 255 (435)
Q Consensus 176 ~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~ 255 (435)
+....+...+|.+|..+|+|++|+.+|++++++.++..+
T Consensus 66 -----------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 66 -----------------------------------------PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 111234445677889999999999999999999765433
Q ss_pred cCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 256 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
.++ +. ...+++++|.+|..+|+|++|+.+|++++.+.++.+|+++|..+.+++++|.+|..+|++++|
T Consensus 105 -~~~---------~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 172 (311)
T 3nf1_A 105 -KDH---------PA--VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV 172 (311)
T ss_dssp -TTC---------HH--HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred -CCC---------hH--HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Confidence 111 11 335778999999999999999999999999999999999999999999999999999998776
Q ss_pred hhhHHHHHHHHHHHHHhc-CCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 336 SALLIQEGLYRRALEFLK-APPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 336 ~~~~~Ae~Ly~rAL~I~k-~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
+.+|++++++.+ ..+.++|.....+.+++.++..+|+|++|+.....
T Consensus 173 ------~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 173 ------EYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp ------HHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 899999999985 45788898888999999999999999999887633
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-18 Score=173.13 Aligned_cols=305 Identities=14% Similarity=0.049 Sum_probs=216.6
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ra 134 (435)
=+.+|..+..+..+|..+.+ .|+|++|+.+|++++.+ +|....+++++|.+|..+|+|++|+..|+++
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLA----AGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ----CHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 36788889999999999854 58999999999999975 3556889999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHH-------HHHHHHHHhcCC
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRAN-------AVKGLVELAHGN 207 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~-------Ai~~~~~~lgg~ 207 (435)
+.+.... ..++..++..+..+|.+..|....+.++.+ .+........+..... -.......-.|+
T Consensus 87 l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 87 IQLKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKS----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8776543 234567778888889888777665554321 1100000001000000 000011112233
Q ss_pred Cccccccc------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHH
Q 013867 208 LESGLQEE------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALG 281 (435)
Q Consensus 208 h~~a~~~~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa 281 (435)
++.|...+ .|....+...+|.+|..+|+|++|+.+|++++++. .. ...+++++|
T Consensus 159 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-----------------~~~~~~~l~ 218 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---ND-----------------NTEAFYKIS 218 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---CS-----------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC-----------------CHHHHHHHH
Confidence 33322111 24455677889999999999999999999999882 11 124678999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHH---------HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 282 QLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL---------TCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 282 ~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L---------~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.+|..+|++++|..+|++++.+ .|+++.+...+ .++|.+|..+|++++| ..+|++++++.
T Consensus 219 ~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A------~~~~~~~l~~~ 287 (450)
T 2y4t_A 219 TLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA------TSKYESVMKTE 287 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhcC
Confidence 9999999999999999999964 67777766655 4559999999998776 89999999875
Q ss_pred cCCCCCCCc-hhhhhccHHHHHHHhcCHHHHhhHhhhhh----hHHHHHHHHHHHHhcccchhHHHH
Q 013867 353 KAPPLESEG-VETKVDRTDIVALARGGYAEALSVQQNRK----DEGERMKRWAEAAWRNRRVSLAEA 414 (435)
Q Consensus 353 k~~~~~hp~-~a~~l~nla~~~~a~G~yaeal~~~~~r~----~eae~~~~~a~~~~~~~r~~l~~~ 414 (435)
|+++. ....+.+++.++...|+|++|+.....-. ...+.+...+..++..+++..|..
T Consensus 288 ----p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 350 (450)
T 2y4t_A 288 ----PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 350 (450)
T ss_dssp ----CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 33444 34567789999999999999988764432 226778888888888888776653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-19 Score=172.79 Aligned_cols=267 Identities=12% Similarity=0.028 Sum_probs=196.3
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+..+.++|..+.+ .|+|++|+.+|++++.+. |....++.++|.+|..+|+|++|++.|++++.+.+..
T Consensus 64 ~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 131 (368)
T 1fch_A 64 HPQPFEEGLRRLQ----EGDLPNAVLLFEAAVQQD--------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN 131 (368)
T ss_dssp CSSHHHHHHHHHH----TTCHHHHHHHHHHHHHSC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC
Confidence 4556788888853 589999999999999753 5567889999999999999999999999998876543
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCc------------------hhchhhHHHHHHHHHHHHHH
Q 013867 142 LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN------------------YKTYGAVNSRANAVKGLVEL 203 (435)
Q Consensus 142 L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~------------------~~eaeal~~~a~Ai~~~~~~ 203 (435)
..++..++..+..+|.+..|......++.+........ .+..-.......|+....+.
T Consensus 132 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 207 (368)
T 1fch_A 132 ----QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA 207 (368)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 23566777888889998888877776654321111000 00000111112222221111
Q ss_pred hcCCCcccccccccc--hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHH
Q 013867 204 AHGNLESGLQEEEGC--TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALG 281 (435)
Q Consensus 204 lgg~h~~a~~~~~~~--~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa 281 (435)
+.- .|. ...+..++|.+|..+|+|++|+.+|++++.+. + . ...+++++|
T Consensus 208 ~~~---------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~-~-----------~~~~~~~l~ 258 (368)
T 1fch_A 208 VRL---------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--------P-N-----------DYLLWNKLG 258 (368)
T ss_dssp HHH---------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHH
T ss_pred HHh---------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------c-C-----------CHHHHHHHH
Confidence 111 122 45677889999999999999999999999881 1 1 114678999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC-C---C
Q 013867 282 QLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP-P---L 357 (435)
Q Consensus 282 ~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~-~---~ 357 (435)
.+|..+|+|++|+..|++++.+ +|+...++.++|.+|..+|++++| ...|++++++.... + .
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 259 ATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREA------VEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHTC------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhCCCCCCcccc
Confidence 9999999999999999999987 567778899999999999998776 89999999998432 2 2
Q ss_pred CCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 358 ESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 358 ~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
.++.......+++.++...|++++|..+..
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 345567788899999999999998887764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-20 Score=192.99 Aligned_cols=140 Identities=14% Similarity=0.050 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+.+|.+-...+. .+|+|++|+.+|+++|++.++.+|++||+++.+++|||.+|..||+|++|++++++++++.++
T Consensus 287 ~~~ll~~ie~~~----~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~- 361 (429)
T 3qwp_A 287 VQESLKKIEELK----AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI- 361 (429)
T ss_dssp HHHHHHHHHHHH----HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHH----hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH-
Confidence 445555444442 478999999999999999999999999999999999999999999999999888887443211
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhH
Q 013867 142 LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGS 221 (435)
Q Consensus 142 L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~ 221 (435)
.+|++||+
T Consensus 362 -------------------------------------------------------------~lg~~Hp~----------- 369 (429)
T 3qwp_A 362 -------------------------------------------------------------FFPGSHPV----------- 369 (429)
T ss_dssp -------------------------------------------------------------HSCSSCHH-----------
T ss_pred -------------------------------------------------------------HcCCCChH-----------
Confidence 23333321
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+..+++|||.+|..||+|++|+++|+|||
T Consensus 370 ---------------------------------------------------~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 370 ---------------------------------------------------RGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 22467899999999999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHh
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNK 329 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~q 329 (435)
+|.++++|++||.|+.+++||+.+....
T Consensus 399 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 399 DIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.7e-19 Score=173.87 Aligned_cols=281 Identities=16% Similarity=0.076 Sum_probs=205.1
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCc
Q 013867 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (435)
Q Consensus 104 Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~ 183 (435)
.+..+..+..+|..+..+|+|++|+..|++++.+..........++..++..|..+|.+..|...++.++.+...... .
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~ 122 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-R 122 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-H
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-c
Confidence 467888999999999999999999999999998765543333446778888899999999998888887777544331 0
Q ss_pred hhchhhHHHHHHHHHHHHHHhcCCCccccccc------------ccchhHHHHHHHHHHHHhhc----------------
Q 013867 184 YKTYGAVNSRANAVKGLVELAHGNLESGLQEE------------EGCTGSAALSYGEYLHATRN---------------- 235 (435)
Q Consensus 184 ~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~------------~~~~~~~a~~la~~~~~~G~---------------- 235 (435)
...+..+.. .+.+....|+++.|...+ ++....+..++|.+|..+|+
T Consensus 123 ~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~ 197 (411)
T 4a1s_A 123 LGEAKSSGN-----LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE 197 (411)
T ss_dssp HHHHHHHHH-----HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred hHHHHHHHH-----HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH
Confidence 111111111 111122223333322111 23445677788999999999
Q ss_pred -hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 013867 236 -FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 314 (435)
Q Consensus 236 -y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~ 314 (435)
|++|+.+|++++++..+... + + ....++.++|.+|..+|+|++|+.+|++++.+..+. .+++.
T Consensus 198 ~~~~A~~~~~~al~~~~~~~~---~---------~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~ 261 (411)
T 4a1s_A 198 ALTRAVEFYQENLKLMRDLGD---R---------G--AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAA 261 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC---H---------H--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC---H---------H--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHH
Confidence 99999999999999654321 1 1 133577899999999999999999999999999884 46778
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH--
Q 013867 315 VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE-- 392 (435)
Q Consensus 315 va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e-- 392 (435)
++.++.++|.+|..+|++++| +..|++++++.... .+++..+..+.+++.++..+|+|++|+..+..-...
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDA------AEHYKRTLALAVEL-GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHH------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHH------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 899999999999999998776 89999999999643 333446778889999999999999998876432222
Q ss_pred --------HHHHHHHHHHHhcccchhHHH
Q 013867 393 --------GERMKRWAEAAWRNRRVSLAE 413 (435)
Q Consensus 393 --------ae~~~~~a~~~~~~~r~~l~~ 413 (435)
+..+..++..++..+++..|.
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 363 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERAL 363 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 345556777777777765543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-19 Score=176.97 Aligned_cols=254 Identities=11% Similarity=0.095 Sum_probs=191.3
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH--HH-HHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG--VR-VAAMEALAG 154 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~--i~-vaale~L~g 154 (435)
..|+|++|+..|++++.+.... ++.+..+.++++||.+|..+|+|++|+..+++++++.++... .. ..++.+++.
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 4689999999999999988765 556889999999999999999999999999999988765432 12 235566666
Q ss_pred HHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhh
Q 013867 155 LYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATR 234 (435)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G 234 (435)
.|..+|.++.|....+.++.+....+ .. .....+..++|.+|..+|
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~-------------------------~~---------~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQ-------------------------ND---------RFIAISLLNIANSYDRSG 236 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTT-------------------------CH---------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcC-------------------------CH---------HHHHHHHHHHHHHHHHCC
Confidence 67666666555544444433332211 10 123456778899999999
Q ss_pred chHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 013867 235 NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 314 (435)
Q Consensus 235 ~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~ 314 (435)
+|++|+.+|++|+++.++... |. ...++.+||.+|..+|++++|..+|++|+.+..+. ..|.
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~-------------~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~ 298 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVP-------------DL--LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---SHKF 298 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCG-------------GG--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---CCSC
T ss_pred CHHHHHHHHHHHHHHHHhhCC-------------hh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHH
Confidence 999999999999999754321 22 23578999999999999999999999999997654 2355
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhHHH
Q 013867 315 VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGE 394 (435)
Q Consensus 315 va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~eae 394 (435)
....+.+|+.+|..+|+. ..+.+|+.+++. ....|++.....+++.++..+|+|++|+..+.+-..-.+
T Consensus 299 ~~~~~~~l~~ly~~~~~~----------~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 299 YKELFLFLQAVYKETVDE----------RKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHHHHHHSSSCCH----------HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcH----------HHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 555789999999998873 457777777754 234566677777999999999999999998855444344
Q ss_pred HH
Q 013867 395 RM 396 (435)
Q Consensus 395 ~~ 396 (435)
++
T Consensus 368 ~~ 369 (378)
T 3q15_A 368 DI 369 (378)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-19 Score=165.56 Aligned_cols=267 Identities=15% Similarity=0.126 Sum_probs=190.2
Q ss_pred CCCChH-HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 55 GLNSNP-VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (435)
Q Consensus 55 g~~~~~-vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~r 133 (435)
.|+++. .+..+..+|..+.. .|+|++|+.+|++++.+..+. .++|..+.++.++|.+|..+|+|++|++.|++
T Consensus 35 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 108 (338)
T 3ro2_A 35 GTEDLKTLSAIYSQLGNAYFY----LHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 108 (338)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 344443 46778888888853 689999999999999987665 56788999999999999999999999999999
Q ss_pred HHHhhhhhHH--HHHHHHHHHHHHHHhcCC--------------------CcchHHHHHHHHHHHHhcCCCchhchhhHH
Q 013867 134 VENFKNSILG--VRVAAMEALAGLYLQLGQ--------------------DDTSSVVADKCLQLCEKHKPENYKTYGAVN 191 (435)
Q Consensus 134 al~i~e~~L~--i~vaale~L~g~~~~~g~--------------------~~~A~~~~~~~~~l~~~~~~~~~~eaeal~ 191 (435)
++.+.++.-. ....++..++..+..+|. +..|......++.+...... ....+.
T Consensus 109 al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~--- 184 (338)
T 3ro2_A 109 HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD-RAAQGR--- 184 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHH---
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHH---
Confidence 9988765422 123356677788888888 66676666666555433221 000000
Q ss_pred HHHHHHHHHHHHhcCCCccccccc------------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCC
Q 013867 192 SRANAVKGLVELAHGNLESGLQEE------------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM 259 (435)
Q Consensus 192 ~~a~Ai~~~~~~lgg~h~~a~~~~------------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~ 259 (435)
.....+.+....|+++.|...+ .+....+..++|.+|..+|+|++|+.+|++++++..+...
T Consensus 185 --~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 258 (338)
T 3ro2_A 185 --AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---- 258 (338)
T ss_dssp --HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc----
Confidence 0001111112223333322111 1223346677899999999999999999999999643210
Q ss_pred CCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhH
Q 013867 260 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALL 339 (435)
Q Consensus 260 ~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~ 339 (435)
......++.++|.+|..+|+|++|..+|++++.+..+. .+++..+.++.+||.+|..+|++++|
T Consensus 259 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A---- 322 (338)
T 3ro2_A 259 ----------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQA---- 322 (338)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHH----
T ss_pred ----------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHcCChHHH----
Confidence 11133567899999999999999999999999999876 34788899999999999999998876
Q ss_pred HHHHHHHHHHHHhcCC
Q 013867 340 IQEGLYRRALEFLKAP 355 (435)
Q Consensus 340 ~Ae~Ly~rAL~I~k~~ 355 (435)
...|++++++.+..
T Consensus 323 --~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 323 --MHFAEKHLEISREV 336 (338)
T ss_dssp --HHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHhh
Confidence 89999999998654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.6e-20 Score=183.96 Aligned_cols=291 Identities=12% Similarity=0.008 Sum_probs=181.3
Q ss_pred CChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCC-CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQ-LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 57 ~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG-~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
+++.-|...+++|..+. .+|+|++|+..|++++++.++..+ ..||.++.+++|||.+|..+|+|++|+..|++++
T Consensus 46 ~~~~~a~~yn~Lg~~~~----~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKH----LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp C---CCHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 45556778888999884 378999999999999999877655 5689999999999999999999999999999999
Q ss_pred HhhhhhHHH---H-HHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCc
Q 013867 136 NFKNSILGV---R-VAAMEALAGLYLQL--GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLE 209 (435)
Q Consensus 136 ~i~e~~L~i---~-vaale~L~g~~~~~--g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~ 209 (435)
.|.+...+. . ..+..+++..+... +.++.|....++++.+- |. ..+.......+... ..-.++..
T Consensus 122 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~----p~---~~~~~~~~~~~~~~--l~~~~~~~ 192 (472)
T 4g1t_A 122 HVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK----PK---NPEFTSGLAIASYR--LDNWPPSQ 192 (472)
T ss_dssp HHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----TT---CHHHHHHHHHHHHH--HHHSCCCC
T ss_pred HHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHH--hcCchHHH
Confidence 887654321 0 11222222222222 23344544444433321 10 11111111110000 00112222
Q ss_pred cccccc------ccchhHHHHHHH----HHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHH
Q 013867 210 SGLQEE------EGCTGSAALSYG----EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA 279 (435)
Q Consensus 210 ~a~~~~------~~~~~~~a~~la----~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~n 279 (435)
.+.... +|....+..+++ .++...|++++|+.+|++++.+. + . ...++++
T Consensus 193 ~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--------~-~-----------~~~~~~~ 252 (472)
T 4g1t_A 193 NAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--------P-G-----------VTDVLRS 252 (472)
T ss_dssp CTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--------S-S-----------CHHHHHH
T ss_pred HHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--------c-c-----------HHHHHHH
Confidence 221110 233334444444 44556789999999999999881 1 1 1245789
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhh------hhHHHHHHHHHHHHHhc
Q 013867 280 LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSS------ALLIQEGLYRRALEFLK 353 (435)
Q Consensus 280 La~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~------~~~~Ae~Ly~rAL~I~k 353 (435)
||.+|..+|++++|...|++|+++ +|+.+.++++||.+|..++....+. ....+...+++|+..++
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 324 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLK 324 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999999999986 7899999999999999887654321 11223445555555553
Q ss_pred CCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 354 APPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 354 ~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
.....+|+......+++.++..+|+|++|+..+.+
T Consensus 325 ~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 325 KADEANDNLFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp HHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 21112344455677899999999999999887643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.4e-18 Score=167.47 Aligned_cols=234 Identities=9% Similarity=-0.057 Sum_probs=179.6
Q ss_pred CCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 56 ~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
++.+..+..+.++|..+.. .|+|++|+..|++++.+.++. +..++..+.++++||.+|..+|+|++|++.|++++
T Consensus 137 ~~~~~~a~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 211 (383)
T 3ulq_A 137 KDRIEKAEFFFKMSESYYY----MKQTYFSMDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211 (383)
T ss_dssp CCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5677789999999999953 689999999999999998876 33478899999999999999999999999999998
Q ss_pred HhhhhhHHH--HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccc
Q 013867 136 NFKNSILGV--RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQ 213 (435)
Q Consensus 136 ~i~e~~L~i--~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~ 213 (435)
++.++.-.. ...++.+++.+|..+|.++.|......++.+... .+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~-------------------------~~~------- 259 (383)
T 3ulq_A 212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE-------------------------SNI------- 259 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------------------TTC-------
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-------------------------hcc-------
Confidence 886644111 1224555666666665554443333322222111 111
Q ss_pred ccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH
Q 013867 214 EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 214 ~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA 293 (435)
.+....+..++|.+|..+|+|++|+.+|++|+++..+... +. ....+.+||.+|..+|++
T Consensus 260 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~--~~~~~~~l~~~~~~~~~~--- 319 (383)
T 3ulq_A 260 --LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD-------------VI--YLSEFEFLKSLYLSGPDE--- 319 (383)
T ss_dssp --GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------HH--HHHHHHHHHHHHTSSCCH---
T ss_pred --chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-------------HH--HHHHHHHHHHHHhCCCcH---
Confidence 1334567788999999999999999999999999643211 11 223467899999999997
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 294 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 294 e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
..+++|+.+.++. ..+|.+..++.+||.+|..+|++++| ...|++|+++.+..
T Consensus 320 -~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A------~~~~~~al~~~~~i 372 (383)
T 3ulq_A 320 -EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKA------SAYFLKVEQVRQLI 372 (383)
T ss_dssp -HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHTSC
T ss_pred -HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHHHHh
Confidence 6788888888887 78999999999999999999998877 89999999999754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=175.04 Aligned_cols=309 Identities=8% Similarity=-0.030 Sum_probs=189.2
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE--SGNYVEAIEKLQ 132 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~--qGky~eA~~l~~ 132 (435)
...+|.++..+.|+|.++. .+|+|++|+..|++++.|.++..++.|+..+.++.++|..+.. +++|++|++.|+
T Consensus 87 ~~~~~~~~~~~~nla~~y~----~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~ 162 (472)
T 4g1t_A 87 DQAEIRSLVTWGNYAWVYY----HMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFE 162 (472)
T ss_dssp GGCTTTTHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHH----HcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 3458889999999999994 3799999999999999999999999999999999999987665 457999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccc
Q 013867 133 KVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGL 212 (435)
Q Consensus 133 ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~ 212 (435)
+++.+.+....... .+..+.......+....|......++.+- +. ...........+..+ ....++.+.+.
T Consensus 163 kal~~~p~~~~~~~-~~~~~~~~l~~~~~~~~al~~~~~al~l~----p~---~~~~~~~l~~~~~~~-~~~~~~~~~a~ 233 (472)
T 4g1t_A 163 KALEKKPKNPEFTS-GLAIASYRLDNWPPSQNAIDPLRQAIRLN----PD---NQYLKVLLALKLHKM-REEGEEEGEGE 233 (472)
T ss_dssp HHHHHSTTCHHHHH-HHHHHHHHHHHSCCCCCTHHHHHHHHHHC----SS---CHHHHHHHHHHHHHC-C------CHHH
T ss_pred HHHHhCCCCHHHHH-HHHHHHHHhcCchHHHHHHHHHHHHhhcC----Cc---chHHHHHHHHHHHHH-HhhhhHHHHHH
Confidence 99988765432211 11111111223455556655554444331 00 001111111000000 00001111111
Q ss_pred c------ccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccc---------------------
Q 013867 213 Q------EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC--------------------- 265 (435)
Q Consensus 213 ~------~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~--------------------- 265 (435)
. ..+|....+..++|.+|..+|+|++|+.+|++|+++.-.... -...+|.+
T Consensus 234 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~lg~~y~~~~~~~~~~~~~~~~~~~~ 311 (472)
T 4g1t_A 234 KLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY--LHCQIGCCYRAKVFQVMNLRENGMYGKRK 311 (472)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHHHHHHHHC------CHHH
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 0 012555677788899999999999999999999876200000 00000000
Q ss_pred ----------------cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH-HH
Q 013867 266 ----------------NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF-RN 328 (435)
Q Consensus 266 ----------------~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly-~~ 328 (435)
...|+ ...++.++|.+|..+|+|++|+++|++||.+ .+++......+.++|.++ ..
T Consensus 312 ~~~~~~~A~~~~~~a~~~~~~--~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-----~~~~~~~~~~~~~~~~~~~~~ 384 (472)
T 4g1t_A 312 LLELIGHAVAHLKKADEANDN--LFRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQ 384 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT--TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHhhcCCc--hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHHH
Confidence 00000 0113468999999999999999999999986 345555556677888654 46
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhcCC-----------------CCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhh
Q 013867 329 KAMQEHSSALLIQEGLYRRALEFLKAP-----------------PLESEGVETKVDRTDIVALARGGYAEALSVQQNRKD 391 (435)
Q Consensus 329 qG~~e~A~~~~~Ae~Ly~rAL~I~k~~-----------------~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~ 391 (435)
+|++++| +..|++||+|.... -..+|+.+..+++++.++..+|+|++|+..+++..+
T Consensus 385 ~~~~~~A------i~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 385 MKCEDKA------IHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp SSCHHHH------HHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred CCCHHHH------HHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777665 88899999875211 012566677899999999999999999998866443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-17 Score=155.69 Aligned_cols=298 Identities=12% Similarity=0.029 Sum_probs=209.4
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+..+..+|..+. ..|+|++|+.+|++++... |....++.++|.+|..+|+|++|+..|++++.+.+..
T Consensus 3 ~~~~~~~~~~~~----~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 70 (359)
T 3ieg_A 3 VEKHLELGKKLL----AAGQLADALSQFHAAVDGD--------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF 70 (359)
T ss_dssp HHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 345677787774 3689999999999999753 4456789999999999999999999999998776543
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHH-------HHHHHHHHhcCCCcccccc
Q 013867 142 LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRAN-------AVKGLVELAHGNLESGLQE 214 (435)
Q Consensus 142 L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~-------Ai~~~~~~lgg~h~~a~~~ 214 (435)
. .++..++..+..+|.+..|......++.+. +.............. -.........|+++.|...
T Consensus 71 ~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 142 (359)
T 3ieg_A 71 T----AARLQRGHLLLKQGKLDEAEDDFKKVLKSN----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITF 142 (359)
T ss_dssp H----HHHHHHHHHHHHHTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred c----hHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 2 345566777778888877766555543321 100001111111100 0001111223443333221
Q ss_pred c------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC
Q 013867 215 E------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG 288 (435)
Q Consensus 215 ~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG 288 (435)
+ .|....+...+|.++..+|+|++|+.+|++++++. + . ...++.++|.+|..+|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~-~-----------~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 143 LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--------S-D-----------NTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------S-C-----------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------C-C-----------CHHHHHHHHHHHHHcC
Confidence 1 24456677888999999999999999999999761 1 1 1145789999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHH---------HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q 013867 289 NFGDAEEILTRTLTKTEELFGSHHPKVGVVLT---------CLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLES 359 (435)
Q Consensus 289 ~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~---------nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~h 359 (435)
+|++|...|++++.+ .|+++.+...+. ++|.+|..+|++++| ...|++++++. +++
T Consensus 203 ~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~~~~~~----~~~ 267 (359)
T 3ieg_A 203 DHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA------TSKYESVMKTE----PSV 267 (359)
T ss_dssp CHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----CSS
T ss_pred CHHHHHHHHHHHHhh-----CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhcC----CCc
Confidence 999999999999975 578888665554 459999999998776 89999999876 233
Q ss_pred Cc-hhhhhccHHHHHHHhcCHHHHhhHhhhhhh----HHHHHHHHHHHHhcccchhHHHH
Q 013867 360 EG-VETKVDRTDIVALARGGYAEALSVQQNRKD----EGERMKRWAEAAWRNRRVSLAEA 414 (435)
Q Consensus 360 p~-~a~~l~nla~~~~a~G~yaeal~~~~~r~~----eae~~~~~a~~~~~~~r~~l~~~ 414 (435)
+. ....+.+++.++..+|+|++|+..+..-.. ..+.+...+..++..+++..|..
T Consensus 268 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 327 (359)
T 3ieg_A 268 AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 327 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 33 334566799999999999999988744333 25777888999998888776654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9.4e-18 Score=158.74 Aligned_cols=270 Identities=13% Similarity=0.017 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
..+..+...|..+.. .|+|++|+.+|++++... |.....+..+|.+|..+|+|++|++.|++++.+..
T Consensus 19 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 86 (327)
T 3cv0_A 19 MYHENPMEEGLSMLK----LANLAEAALAFEAVCQAA--------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86 (327)
T ss_dssp GGSSCHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhhHHHHHHHHHHHH----hccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 344556777877743 579999999999999753 45677888999999999999999999999987754
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch----------------hc--hhhHHHHHHHHHHHH
Q 013867 140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY----------------KT--YGAVNSRANAVKGLV 201 (435)
Q Consensus 140 ~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~----------------~e--aeal~~~a~Ai~~~~ 201 (435)
.. ..++..++..+..+|.+..|......++........... .. .........|+....
T Consensus 87 ~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 87 KD----IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHH
T ss_pred CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 43 234556777788889888887777666543211110000 00 011112222222222
Q ss_pred HHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHH
Q 013867 202 ELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALG 281 (435)
Q Consensus 202 ~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa 281 (435)
+.+.- .|....+...+|.+|..+|+|++|+.+|++++++. + . ...++.++|
T Consensus 163 ~~~~~---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~-~-----------~~~~~~~l~ 213 (327)
T 3cv0_A 163 AALEM---------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--------P-D-----------DAQLWNKLG 213 (327)
T ss_dssp HHHHH---------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHH
T ss_pred HHHhh---------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------C-C-----------cHHHHHHHH
Confidence 21111 13345677888999999999999999999999881 0 1 113578999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC-CCCCC
Q 013867 282 QLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP-PLESE 360 (435)
Q Consensus 282 ~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~-~~~hp 360 (435)
.+|..+|+|++|..+|++++.+ +|+...++.++|.+|..+|++++| ...|++++++.... ++.+.
T Consensus 214 ~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~a~~~~~~~~~~~~~ 279 (327)
T 3cv0_A 214 ATLANGNRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLA------AKQLVRAIYMQVGGTTPTGE 279 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHTTSCC----
T ss_pred HHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHH------HHHHHHHHHhCCcccccccc
Confidence 9999999999999999999986 355566899999999999998776 89999999998432 22221
Q ss_pred c----hhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 361 G----VETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 361 ~----~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
. ......+++.++..+|++++|......
T Consensus 280 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp -CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1 456778899999999999999887743
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-18 Score=158.99 Aligned_cols=205 Identities=13% Similarity=0.030 Sum_probs=141.3
Q ss_pred HHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhH
Q 013867 63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL 142 (435)
Q Consensus 63 ~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L 142 (435)
....++|..+.+ .|+|++|+..|++++++. |.-...+.++|.+|..+|+|++|+..|++++.+.
T Consensus 6 ~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---- 69 (217)
T 2pl2_A 6 QNPLRLGVQLYA----LGRYDAALTLFERALKEN--------PQDPEALYWLARTQLKLGLVNPALENGKTLVART---- 69 (217)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHTTS--------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 456677877743 689999999999999554 5667889999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHH
Q 013867 143 GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSA 222 (435)
Q Consensus 143 ~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~ 222 (435)
|+.. .. ......++... ....+ .
T Consensus 70 ------------------P~~~-~a-~~~lg~~~~~~----------------------~~~~~----------~----- 92 (217)
T 2pl2_A 70 ------------------PRYL-GG-YMVLSEAYVAL----------------------YRQAE----------D----- 92 (217)
T ss_dssp ------------------TTCH-HH-HHHHHHHHHHH----------------------HHTCS----------S-----
T ss_pred ------------------CCcH-HH-HHHHHHHHHHh----------------------hhhhh----------h-----
Confidence 2211 00 00111111000 00000 0
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
.+...|+|++|+..|++++++ . |+ ...++.++|.+|..+|+|++|+..|++|++
T Consensus 93 ------~~~~~g~~~~A~~~~~~al~~-----------~-------P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 93 ------RERGKGYLEQALSVLKDAERV-----------N-------PR--YAPLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------hcccccCHHHHHHHHHHHHHh-----------C-------cc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 123469999999999999998 1 11 124678999999999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHH
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEA 382 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaea 382 (435)
+. ++ ...+.+||.+|..+|++++| +..|++++++. |+......+++.++..+|+|++|
T Consensus 147 ~~------~~---~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~-------P~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 147 LE------DT---PEIRSALAELYLSMGRLDEA------LAQYAKALEQA-------PKDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp HC------CC---HHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHS-------TTCHHHHHHHHHHHTC-------
T ss_pred cc------cc---hHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC-------CCChHHHHHHHHHHHHccCHHHH
Confidence 84 34 45678999999999998876 89999999974 44445677899999999999999
Q ss_pred hhHhhh
Q 013867 383 LSVQQN 388 (435)
Q Consensus 383 l~~~~~ 388 (435)
+..+.+
T Consensus 205 ~~~~~~ 210 (217)
T 2pl2_A 205 ARAAAL 210 (217)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 887644
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.5e-19 Score=171.91 Aligned_cols=250 Identities=12% Similarity=0.072 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~ 140 (435)
.+..+.++|..+.+ .|+|++|+.+|++++.+. |....++.+||.+|..+|+|++|++.|++++.+.+.
T Consensus 98 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 165 (365)
T 4eqf_A 98 DAEAWQFLGITQAE----NENEQAAIVALQRCLELQ--------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165 (365)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc
Confidence 35567788888853 689999999999999874 556788999999999999999999999999887654
Q ss_pred hHHHH------HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccc
Q 013867 141 ILGVR------VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQE 214 (435)
Q Consensus 141 ~L~i~------vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~ 214 (435)
..... ......++..+..+|.+..|....+.++.+... ..+...+.... .+....|+++.|...
T Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~l~-----~~~~~~g~~~~A~~~ 235 (365)
T 4eqf_A 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD-----MIDPDLQTGLG-----VLFHLSGEFNRAIDA 235 (365)
T ss_dssp HHCC-------------------CCHHHHHHHHHHHHHHHHSCS-----SCCHHHHHHHH-----HHHHHHTCHHHHHHH
T ss_pred chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC-----ccCHHHHHHHH-----HHHHHCCCHHHHHHH
Confidence 32211 111223344455555555555544444333110 00111111111 111112333322211
Q ss_pred c------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC
Q 013867 215 E------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG 288 (435)
Q Consensus 215 ~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG 288 (435)
+ .|....+..++|.+|..+|+|++|+.+|++++++. |. ...++.+||.+|..+|
T Consensus 236 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------p~-----------~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 236 FNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ---------PG-----------FIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TT-----------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------CC-----------chHHHHHHHHHHHHCC
Confidence 1 24456778889999999999999999999999981 11 1246789999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCChhH----HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc-CCCCC
Q 013867 289 NFGDAEEILTRTLTKTEELFGSHHPKV----GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLE 358 (435)
Q Consensus 289 ~y~eAe~l~~rAL~I~e~~lG~~HP~v----a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k-~~~~~ 358 (435)
+|++|..+|++++.+..+..|+.||.. +..+.+|+.+|..+|+.+.+ +...++++++++ .++++
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a------~~~~~~~l~~~~~~~~~~ 364 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF------QAANLGDLDVLLRAFNLD 364 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH------HHHHTTCCGGGTTTTTCC
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH------HHHHHhhHHHHHHhcCCC
Confidence 999999999999999999999988876 78899999999999998766 888999999984 55654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-17 Score=161.17 Aligned_cols=265 Identities=10% Similarity=0.013 Sum_probs=179.7
Q ss_pred ChhcHHHHHHHHHHHHhccCc-CC--CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHH--HHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPS-DG--QLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV--RVAAMEAL 152 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~-~l--G~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i--~vaale~L 152 (435)
+.|+|++|+.+++++.+.... .+ +++....+..+...+.+|..+|+|++|++.|++++.+..+.-.. ...++.++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 468999999999999886654 23 47777788889999999999999999999999998876543111 12234455
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHH
Q 013867 153 AGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHA 232 (435)
Q Consensus 153 ~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~ 232 (435)
+.+|..+|.+..|...++.++.+... .|+. .....+..++|.+|..
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~--------------------------~g~~--------~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVE--------------------------NGTP--------DTAAMALDRAGKLMEP 128 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHT--------------------------TTCH--------HHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHH--------------------------cCCH--------HHHHHHHHHHHHHHHc
Confidence 55555555444444333333333221 1111 1123456678888988
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH 312 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~H 312 (435)
|+|++|+.+|++|+++.... + . . .....+++++|.+|..+|+|++|..+|++++.+..+.- .+
T Consensus 129 -g~~~~A~~~~~~Al~~~~~~-~---~-~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~ 191 (307)
T 2ifu_A 129 -LDLSKAVHLYQQAAAVFENE-E---R-L---------RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME--NY 191 (307)
T ss_dssp -TCHHHHHHHHHHHHHHHHHT-T---C-H---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CH
T ss_pred -CCHHHHHHHHHHHHHHHHhC-C---C-h---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--Ch
Confidence 99999999999999996431 1 1 0 11235788999999999999999999999999988753 36
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH
Q 013867 313 PKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE 392 (435)
Q Consensus 313 P~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e 392 (435)
+.++..+.+++.+|..+|++++| ...|++++ +... .........+.++...+ ..|+.++...+. +...
T Consensus 192 ~~~~~~~~~~g~~~~~~g~~~~A------~~~~~~al-~~p~--~~~~~e~~~l~~l~~~~-~~~d~~~~~~~~--~~~~ 259 (307)
T 2ifu_A 192 PTCYKKCIAQVLVQLHRADYVAA------QKCVRESY-SIPG--FSGSEDCAALEDLLQAY-DEQDEEQLLRVC--RSPL 259 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHT-TSTT--STTSHHHHHHHHHHHHH-HTTCHHHHHHHT--TSHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHh-CCCC--CCCCHHHHHHHHHHHHH-HhcCHHHHHHHH--hCch
Confidence 77888999999999999998776 89999999 5421 11222333455555554 456766555522 1333
Q ss_pred HHHHHHHHHHHhc
Q 013867 393 GERMKRWAEAAWR 405 (435)
Q Consensus 393 ae~~~~~a~~~~~ 405 (435)
..++-.|-..+.+
T Consensus 260 ~~~ld~~~~~~~~ 272 (307)
T 2ifu_A 260 VTYMDNDYAKLAI 272 (307)
T ss_dssp HHTSCHHHHHHHH
T ss_pred hhhhhHHHHHHHH
Confidence 4444444444443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-18 Score=165.87 Aligned_cols=280 Identities=14% Similarity=0.098 Sum_probs=186.8
Q ss_pred hhcHHHHHH-HHHHHHhccCcCCCCCcch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013867 79 DESYSQGML-VLEQCLSTQPSDGQLAESW-RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156 (435)
Q Consensus 79 ~G~Y~eA~~-~~eqaL~i~~~~lG~~Hp~-~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~ 156 (435)
.|+|++|+. .|++++.+.. ++|. .+..+.++|..|..+|+|++|+..|++++.+.+.. ..++..++..+
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~ 108 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEE-----ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTTQ 108 (368)
T ss_dssp --------CHHHHCCCCCCS-----SCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCC-----CCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Confidence 578999999 9999996643 3333 35678899999999999999999999998765543 23456677778
Q ss_pred HhcCCCcchHHHHHHHHHHH--------------HhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc-----cc
Q 013867 157 LQLGQDDTSSVVADKCLQLC--------------EKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE-----EG 217 (435)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~l~--------------~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~-----~~ 217 (435)
..+|.+..|......++.+. ...+ .+++| +....+++. ..++.+...... ..
T Consensus 109 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g--~~~~A--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 179 (368)
T 1fch_A 109 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNES--LQRQA--CEILRDWLR-----YTPAYAHLVTPAEEGAGGA 179 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHH--HHHHHHHHH-----TSTTTGGGCC---------
T ss_pred HHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CHHHH--HHHHHHHHH-----hCcCcHHHHHHHHHHhhhh
Confidence 88888877777666655431 1111 11111 111111111 111111100000 00
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
........++.++ .+|+|++|+.+|++++++. . ... ....++++|.+|..+|+|++|..+|
T Consensus 180 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~---p------~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~ 240 (368)
T 1fch_A 180 GLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD---P------TSI---------DPDVQCGLGVLFNLSGEYDKAVDCF 240 (368)
T ss_dssp ------CTTHHHH-HHHHHHHHHHHHHHHHHHS---T------TSC---------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC---c------Ccc---------cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0000111345555 8999999999999999881 1 100 1246789999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhc
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG 377 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G 377 (435)
++++.+ +|+...+++++|.+|..+|++++| +..|++++++. |+......+++.++..+|
T Consensus 241 ~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 241 TAALSV--------RPNDYLLWNKLGATLANGNQSEEA------VAAYRRALELQ-------PGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHh--------CcCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC-------CCcHHHHHHHHHHHHHCC
Confidence 999987 566678999999999999998776 89999999984 444567789999999999
Q ss_pred CHHHHhhHhhhhhhH---------------HHHHHHHHHHHhcccchhHHHHhc
Q 013867 378 GYAEALSVQQNRKDE---------------GERMKRWAEAAWRNRRVSLAEALN 416 (435)
Q Consensus 378 ~yaeal~~~~~r~~e---------------ae~~~~~a~~~~~~~r~~l~~~l~ 416 (435)
+|++|+..+.+-... .+.|...+..+...+++..++++.
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 999998866332211 466778888888999988888775
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-17 Score=170.26 Aligned_cols=272 Identities=11% Similarity=0.060 Sum_probs=196.7
Q ss_pred cCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 013867 76 QKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGL 155 (435)
Q Consensus 76 ~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~ 155 (435)
+...|++++|+.+|++++.. |....+++.++.+|..+|+|++|+++|++++...... +.++..++..
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~ 348 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGL---------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN----LDVYPLHLAS 348 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTG---------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----CTTHHHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcC---------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCccc----HHHHHHHHHH
Confidence 34679999999999998855 3457788999999999999999999999997654332 1223444555
Q ss_pred HHhcCCCcchHHHHHHHH--------------HHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhH
Q 013867 156 YLQLGQDDTSSVVADKCL--------------QLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGS 221 (435)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~--------------~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~ 221 (435)
+...|....|..+.+.+. .++...+. +++|... +.+++. . .|....
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~--~~~~~~-----~-----------~~~~~~ 408 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNK--ISEARRY--FSKSST-----M-----------DPQFGP 408 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTC--HHHHHHH--HHHHHH-----H-----------CTTCHH
T ss_pred HHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhcc--HHHHHHH--HHHHHH-----h-----------CCCCHH
Confidence 556666665555444332 22222221 3222222 121111 0 133455
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+...++.+|..+|++++|+.+|++++++. +.. ..++++||.+|..+|++++|+.+|++++
T Consensus 409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 409 AWIGFAHSFAIEGEHDQAISAYTTAARLF--------QGT------------HLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------TTC------------SHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccc------------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67788999999999999999999999771 101 1357889999999999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCc-hhhhhccHHHHHHHhcCHH
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEG-VETKVDRTDIVALARGGYA 380 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~-~a~~l~nla~~~~a~G~ya 380 (435)
.+ .+++ ..+++++|.+|..+|++++| +.+|++++++....+. .|+ ....+.+++.++..+|+|+
T Consensus 469 ~~-----~~~~---~~~~~~l~~~~~~~g~~~~A------~~~~~~~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 469 AL-----FQYD---PLLLNELGVVAFNKSDMQTA------INHFQNALLLVKKTQS-NEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp HH-----CCCC---HHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHSCC-CSGGGHHHHHHHHHHHHHTTCHH
T ss_pred Hh-----CCCC---hHHHHHHHHHHHHhCCHHHH------HHHHHHHHHhhhcccc-chhhHHHHHHHHHHHHHHhcCHH
Confidence 76 3444 46799999999999998776 8999999999854333 344 4678889999999999999
Q ss_pred HHhhHhhhhhh----HHHHHHHHHHHHhcccchhHHHHh
Q 013867 381 EALSVQQNRKD----EGERMKRWAEAAWRNRRVSLAEAL 415 (435)
Q Consensus 381 eal~~~~~r~~----eae~~~~~a~~~~~~~r~~l~~~l 415 (435)
+|+..+.+-.. ..+.+...+..+++.+++..|...
T Consensus 534 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITH 572 (597)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99998744322 257777889999999988776543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-18 Score=160.44 Aligned_cols=278 Identities=13% Similarity=0.095 Sum_probs=193.4
Q ss_pred HHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHH
Q 013867 65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV 144 (435)
Q Consensus 65 m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i 144 (435)
+..+|..+. ..|+|++|+.+|++++... |.....+..++.++..+|++++|+..+++++...+...
T Consensus 25 ~~~~a~~~~----~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-- 90 (330)
T 3hym_B 25 VVSLAERHY----YNCDFKMCYKLTSVVMEKD--------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP-- 90 (330)
T ss_dssp HHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--
T ss_pred HHHHHHHHH----HcCCHHHHHHHHHHHHHcC--------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH--
Confidence 344555552 2479999999999999654 33445677788899999999999999999988665432
Q ss_pred HHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc------cc
Q 013867 145 RVAAMEALAGLYLQLG-QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE------EG 217 (435)
Q Consensus 145 ~vaale~L~g~~~~~g-~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~------~~ 217 (435)
.++..++..+..+| .+..|....+.++.+. +. ....+...+.. ....|+++.|...+ .|
T Consensus 91 --~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~----~~---~~~~~~~l~~~-----~~~~~~~~~A~~~~~~a~~~~~ 156 (330)
T 3hym_B 91 --VSWFAVGCYYLMVGHKNEHARRYLSKATTLE----KT---YGPAWIAYGHS-----FAVESEHDQAMAAYFTAAQLMK 156 (330)
T ss_dssp --HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC----TT---CTHHHHHHHHH-----HHHHTCHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC----Cc---cHHHHHHHHHH-----HHHccCHHHHHHHHHHHHHhcc
Confidence 23455666777778 6666766655544321 10 11111111111 11122322222111 13
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
....+...+|.+|..+|+|++|+.+|++++++. + . ....++++|.+|..+|+|++|+.+|
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~-~-----------~~~~~~~l~~~~~~~~~~~~A~~~~ 216 (330)
T 3hym_B 157 GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA--------P-E-----------DPFVMHEVGVVAFQNGEWKTAEKWF 216 (330)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------C-C-----------ChHHHHHHHHHHHHcccHHHHHHHH
Confidence 334566678999999999999999999999871 1 1 1145789999999999999999999
Q ss_pred HHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 298 TRTLTKTEELFGSHH-PKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 298 ~rAL~I~e~~lG~~H-P~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
++++.+..+.-++.. |....++.++|.+|..+|++++| +..|++++++. |+....+.+++.++..+
T Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~a~~~~-------~~~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA------LDYHRQALVLI-------PQNASTYSAIGYIHSLM 283 (330)
T ss_dssp HHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS-------TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHhhC-------ccchHHHHHHHHHHHHh
Confidence 999999887766655 66788999999999999998776 89999999985 33345677899999999
Q ss_pred cCHHHHhhHhhhhhhH----HHHHHHHHHHH
Q 013867 377 GGYAEALSVQQNRKDE----GERMKRWAEAA 403 (435)
Q Consensus 377 G~yaeal~~~~~r~~e----ae~~~~~a~~~ 403 (435)
|+|++|+..+.+-... .+.+...+..+
T Consensus 284 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 284 GNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp TCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 9999999887443222 44555555554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8.2e-17 Score=160.46 Aligned_cols=279 Identities=11% Similarity=0.040 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
..+..+.++|..+.. .|+|++|+.+|++++.+. |....++.++|.+|..+|+|++|+..|++++.+..
T Consensus 58 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 125 (450)
T 2y4t_A 58 DNYIAYYRRATVFLA----MGKSKAALPDLTKVIQLK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125 (450)
T ss_dssp TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC
T ss_pred ccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 335566777777743 689999999999999764 45578899999999999999999999999987665
Q ss_pred hhH---HHHH--------HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCC
Q 013867 140 SIL---GVRV--------AAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNL 208 (435)
Q Consensus 140 ~~L---~i~v--------aale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h 208 (435)
... .... ...-.++..+...|.+..|....+.++.+. +. +...+... +.+....|++
T Consensus 126 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~---~~~~~~~l-----~~~~~~~g~~ 193 (450)
T 2y4t_A 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC----VW---DAELRELR-----AECFIKEGEP 193 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TT---CHHHHHHH-----HHHHHHTTCG
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC---ChHHHHHH-----HHHHHHCCCH
Confidence 332 1100 012233455677787777766665544321 10 11111111 1112233454
Q ss_pred ccccccc------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHH
Q 013867 209 ESGLQEE------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQ 282 (435)
Q Consensus 209 ~~a~~~~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ 282 (435)
+.|...+ .|....+...+|.+|..+|++++|+.+|++++.+. . ++ ....... ..-.......++|.
T Consensus 194 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p---~~-~~~~~~~-~~~~~~~~~~~~~~ 265 (450)
T 2y4t_A 194 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD---Q---DH-KRCFAHY-KQVKKLNKLIESAE 265 (450)
T ss_dssp GGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T---TC-HHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C---Ch-HHHHHHH-HHHHHHHHHHHHHH
Confidence 4443222 24455677889999999999999999999999871 1 11 0000000 00000011245599
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCc
Q 013867 283 LEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEG 361 (435)
Q Consensus 283 ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v-a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~ 361 (435)
+|..+|+|++|..+|++++.+ .|++|.. ...+.++|.+|..+|++++| +.+|++++++. |+
T Consensus 266 ~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~a~~~~-------p~ 327 (450)
T 2y4t_A 266 ELIRDGRYTDATSKYESVMKT-----EPSIAEYTVRSKERICHCFSKDEKPVEA------IRVCSEVLQME-------PD 327 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH-----CCSSHHHHHHHHHHHHHHHHTTTCHHHH------HHHHHHHHHHC-------TT
T ss_pred HHHHcCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhC-------cc
Confidence 999999999999999999985 4667765 67899999999999998776 89999999883 44
Q ss_pred hhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 362 VETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 362 ~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
....+.+++.++..+|+|++|+..+++
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 328 NVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 456788899999999999999887643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-17 Score=154.27 Aligned_cols=258 Identities=16% Similarity=0.087 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhch
Q 013867 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY 187 (435)
Q Consensus 108 A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ea 187 (435)
...+..+|..+..+|+|++|++.|++++........ ++..++..+..+|.+..|..+...++... +. ..
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~---~~ 90 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS----CLPVHIGTLVELNKANELFYLSHKLVDLY----PS---NP 90 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT----THHHHHHHHHHHTCHHHHHHHHHHHHHHC----TT---ST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh----hHHHHHHHHHHhhhHHHHHHHHHHHHHhC----cC---CH
Confidence 345778999999999999999999999876554322 22334455666777777666655544321 10 11
Q ss_pred hhHHHHHHHHHHHHHHhcC-CCccccccc------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCC
Q 013867 188 GAVNSRANAVKGLVELAHG-NLESGLQEE------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMN 260 (435)
Q Consensus 188 eal~~~a~Ai~~~~~~lgg-~h~~a~~~~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~ 260 (435)
..+..... +....| +++.|...+ .|....+...+|.+|..+|+|++|+.+|++++++. ..
T Consensus 91 ~~~~~l~~-----~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~----- 157 (330)
T 3hym_B 91 VSWFAVGC-----YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KG----- 157 (330)
T ss_dssp HHHHHHHH-----HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TT-----
T ss_pred HHHHHHHH-----HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cc-----
Confidence 12211111 111122 333222111 24455677889999999999999999999999982 11
Q ss_pred CcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 013867 261 TLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLI 340 (435)
Q Consensus 261 ~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~ 340 (435)
. ..+..++|.+|..+|+|++|+.+|++++.+ .|+...+++++|.+|..+|++++|
T Consensus 158 ~------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A----- 212 (330)
T 3hym_B 158 C------------HLPMLYIGLEYGLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNGEWKTA----- 212 (330)
T ss_dssp C------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHH-----
T ss_pred c------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcccHHHH-----
Confidence 1 024567999999999999999999999986 355668899999999999998776
Q ss_pred HHHHHHHHHHHhcCCCCC--CCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH----HHHHHHHHHHHhcccchhHHHH
Q 013867 341 QEGLYRRALEFLKAPPLE--SEGVETKVDRTDIVALARGGYAEALSVQQNRKDE----GERMKRWAEAAWRNRRVSLAEA 414 (435)
Q Consensus 341 Ae~Ly~rAL~I~k~~~~~--hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e----ae~~~~~a~~~~~~~r~~l~~~ 414 (435)
+..|++++++.+..+.. .|.....+.+++.++..+|+|++|+..+.+-... .+.+...+..+.+.+++..|..
T Consensus 213 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 213 -EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp -HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred -HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHH
Confidence 89999999999654322 2445667889999999999999999877443322 4677788888888888776654
Q ss_pred h
Q 013867 415 L 415 (435)
Q Consensus 415 l 415 (435)
.
T Consensus 292 ~ 292 (330)
T 3hym_B 292 Y 292 (330)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-16 Score=146.10 Aligned_cols=234 Identities=12% Similarity=0.036 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
+..|..+.++|..+.. .|+|++|+.+|++++... . ....+.++|.+|..+|+|++|++.|++++.+.
T Consensus 2 ~~~a~~~~~~g~~~~~----~~~~~~A~~~~~~a~~~~-~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 68 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYK----ARQFDEAIEHYNKAWELH-K--------DITYLNNRAAAEYEKGEYETAISTLNDAVEQG 68 (258)
T ss_dssp HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS-C--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhh-c--------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 4567888999999853 689999999999999875 1 14678999999999999999999999998876
Q ss_pred hhhH---HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc
Q 013867 139 NSIL---GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE 215 (435)
Q Consensus 139 e~~L---~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~ 215 (435)
+..- .....++..++..+..+|.+..|....+.++.+... ......+.....++...-..+.-
T Consensus 69 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--------- 134 (258)
T 3uq3_A 69 REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--------- 134 (258)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred cccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc---------
Confidence 5431 011345667888888999998888777776664211 11112222333333332222221
Q ss_pred ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013867 216 EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE 295 (435)
Q Consensus 216 ~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~ 295 (435)
.|....+...+|.++..+|+|++|+.+|++++++. . . ....+.++|.+|..+|+|++|+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~------~-----------~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA---P------E-----------DARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------T-----------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---c------c-----------cHHHHHHHHHHHHHhCCHHHHHH
Confidence 24455677889999999999999999999999881 1 1 11457899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 296 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 296 l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
.|++++.+ .|+...++.++|.+|..+|++++| ...|++++++..
T Consensus 195 ~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~a~~~~~ 238 (258)
T 3uq3_A 195 DCNKAIEK--------DPNFVRAYIRKATAQIAVKEYASA------LETLDAARTKDA 238 (258)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHh--------CHHHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHhCh
Confidence 99999986 355667899999999999998876 899999999984
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-16 Score=158.98 Aligned_cols=246 Identities=13% Similarity=0.054 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhch
Q 013867 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG--VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY 187 (435)
Q Consensus 110 ~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~--i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ea 187 (435)
.+..+|..+..+|+|++|++.|++++.+.+..-. ....++.+++..|..+|.+..|......++.+......
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~------ 176 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL------ 176 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC------
Confidence 4567899999999999999999999887654321 12234556666666666665555444444443332110
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccc
Q 013867 188 GAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 267 (435)
Q Consensus 188 eal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~ 267 (435)
..+....+..++|.+|..+|+|++|+++|++|+++.++...
T Consensus 177 ---------------------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~------------ 217 (378)
T 3q15_A 177 ---------------------------YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN------------ 217 (378)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------
T ss_pred ---------------------------chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC------------
Confidence 00123456677899999999999999999999999643211
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 013867 268 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRR 347 (435)
Q Consensus 268 ~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~r 347 (435)
......+++|||.+|..+|+|++|+.+|++|+.+.++. .+|..+.++.+||.+|..+|++++| ..+|++
T Consensus 218 --~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~ 286 (378)
T 3q15_A 218 --DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKA------FQFIEE 286 (378)
T ss_dssp --HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHH------HHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHCCCHHHH------HHHHHH
Confidence 11234578999999999999999999999999999887 6788899999999999999998876 899999
Q ss_pred HHHHhcCCCCCCCchhhhhccHHHHHHHhcC---HHHHhhHhhhhh---hHHHHHHHHHHHHhcccchhHHH
Q 013867 348 ALEFLKAPPLESEGVETKVDRTDIVALARGG---YAEALSVQQNRK---DEGERMKRWAEAAWRNRRVSLAE 413 (435)
Q Consensus 348 AL~I~k~~~~~hp~~a~~l~nla~~~~a~G~---yaeal~~~~~r~---~eae~~~~~a~~~~~~~r~~l~~ 413 (435)
++++.+..+ .|.....+.+++.++...|+ +.+|+...+... ...+.....+..+...+.+..|.
T Consensus 287 al~~~~~~~--~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~ 356 (378)
T 3q15_A 287 GLDHITARS--HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAA 356 (378)
T ss_dssp HHHHCCTTC--CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHcC--CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 999986542 34434467788889988888 888888764322 12344556777777777765543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-16 Score=152.72 Aligned_cols=277 Identities=11% Similarity=0.043 Sum_probs=189.2
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN-- 139 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e-- 139 (435)
...+.++|..+. ..|+|++|+..|++++.+. |.....+..+|.+|..+|+|++|++.|++++.+.+
T Consensus 37 ~~~~~~~a~~~~----~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 104 (359)
T 3ieg_A 37 YIAYYRRATVFL----AMGKSKAALPDLTKVIALK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 104 (359)
T ss_dssp HHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCH
T ss_pred HHHHHHHHHHHH----HccCHHHHHHHHHHHHHhC--------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc
Confidence 346677787774 3689999999999999773 44558899999999999999999999999988766
Q ss_pred -hhHHHHH--------HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcc
Q 013867 140 -SILGVRV--------AAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES 210 (435)
Q Consensus 140 -~~L~i~v--------aale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~ 210 (435)
....... ...-.++..+...|.+..|....+.++... +. ....+...+. +....|+++.
T Consensus 105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~---~~~~~~~~~~-----~~~~~~~~~~ 172 (359)
T 3ieg_A 105 QEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC----VW---DAELRELRAE-----CFIKEGEPRK 172 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT---CHHHHHHHHH-----HHHHTTCHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC---chHHHHHHHH-----HHHHCCCHHH
Confidence 3322210 011223566777888877776666554331 10 1111111111 1112233333
Q ss_pred cccc------cccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHH
Q 013867 211 GLQE------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE 284 (435)
Q Consensus 211 a~~~------~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly 284 (435)
|... ..|....+...+|.+|..+|+|++|...|++++++. . +. ....... ..-..+....++|.++
T Consensus 173 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~---~~-~~~~~~~-~~~~~~~~~~~~a~~~ 244 (359)
T 3ieg_A 173 AISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD---Q---DH-KRCFAHY-KQVKKLNKLIESAEEL 244 (359)
T ss_dssp HHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---T---TC-HHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---c---cc-hHHHHHH-HHHHHHHHHHHHHHHH
Confidence 2211 135556788889999999999999999999999881 1 11 0000000 0000011234679999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhhCCCChhH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchh
Q 013867 285 AHMGNFGDAEEILTRTLTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 363 (435)
Q Consensus 285 ~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v-a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a 363 (435)
..+|+|++|...|++++.+. |++|.+ ...+.++|.+|..+|++++| ...|++++++. |+..
T Consensus 245 ~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~-------~~~~ 306 (359)
T 3ieg_A 245 IRDGRYTDATSKYESVMKTE-----PSVAEYTVRSKERICHCFSKDEKPVEA------IRICSEVLQME-------PDNV 306 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-----CSSHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------TTCH
T ss_pred HHcCCHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC-------cccH
Confidence 99999999999999999864 556554 45688999999999998776 89999999983 4445
Q ss_pred hhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 364 TKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 364 ~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
..+.+++.++...|+|++|+..+..
T Consensus 307 ~~~~~~~~~~~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 307 NALKDRAEAYLIEEMYDEAIQDYEA 331 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5778899999999999999887633
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-16 Score=165.15 Aligned_cols=266 Identities=13% Similarity=0.029 Sum_probs=187.7
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
|+.......++..+.+ .|+|++|+.+|++++.... + ...+++.++.+|...|++++|+++|++++...
T Consensus 302 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFV----RSRFIDVLAITTKILEIDP-----Y---NLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp GGCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCT-----T---CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHcCc-----c---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 3445566677777753 5899999999999997642 2 23457788889999999999999998886543
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc---
Q 013867 139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE--- 215 (435)
Q Consensus 139 e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~--- 215 (435)
... +.++..++..|...|..+.|..+.+.+..+. +. +...+..... .....|++++|...+
T Consensus 370 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~---~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 370 PEK----AVTWLAVGIYYLCVNKISEARRYFSKSSTMD----PQ---FGPAWIGFAH-----SFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp TTS----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT---CHHHHHHHHH-----HHHHHTCHHHHHHHHHHH
T ss_pred ccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CC---CHHHHHHHHH-----HHHHcCCHHHHHHHHHHH
Confidence 322 3345566677778888777776666544321 10 0111111100 011112222222111
Q ss_pred ---ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHH
Q 013867 216 ---EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD 292 (435)
Q Consensus 216 ---~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~e 292 (435)
.|....+...++.+|..+|++++|+.+|++++++. + . ...+++++|.+|..+|++++
T Consensus 434 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~-~-----------~~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--------Q-Y-----------DPLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------C-C-----------CHHHHHHHHHHHHHTTCHHH
T ss_pred HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C-C-----------ChHHHHHHHHHHHHhCCHHH
Confidence 13344567778999999999999999999999871 1 1 01457899999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHH
Q 013867 293 AEEILTRTLTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDI 371 (435)
Q Consensus 293 Ae~l~~rAL~I~e~~lG~~HP~-va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~ 371 (435)
|+.+|++++.+..+. +.+|+ .+.+++++|.+|..+|++++| +..|++++++. |+......+++.
T Consensus 494 A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~~~~~~-------p~~~~~~~~l~~ 558 (597)
T 2xpi_A 494 AINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAA------IDALNQGLLLS-------TNDANVHTAIAL 558 (597)
T ss_dssp HHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS-------SCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHhC-------CCChHHHHHHHH
Confidence 999999999997753 34566 589999999999999998876 89999999884 333456778999
Q ss_pred HHHHhcCHHHHhhHhh
Q 013867 372 VALARGGYAEALSVQQ 387 (435)
Q Consensus 372 ~~~a~G~yaeal~~~~ 387 (435)
+|..+|++++|...+.
T Consensus 559 ~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 559 VYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHH
Confidence 9999999999888763
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-16 Score=153.64 Aligned_cols=284 Identities=13% Similarity=0.040 Sum_probs=184.3
Q ss_pred HHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHH
Q 013867 65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV 144 (435)
Q Consensus 65 m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i 144 (435)
....|..+. .+|+|++|+.++++++..... .+....+.+++++|.+|..+|+|++|++.+++++.+.+..-..
T Consensus 17 ~~~~a~~~~----~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 17 NALRAQVAI----NDGNPDEAERLAKLALEELPP---GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHH----HTTCHHHHHHHHHHHHHTCCT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHH----HCCCHHHHHHHHHHHHHcCCC---CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 344454442 368999999999999987631 2234477789999999999999999999999998876543111
Q ss_pred --HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHH
Q 013867 145 --RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSA 222 (435)
Q Consensus 145 --~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~ 222 (435)
...++.+++..+..+|. +++|...+..+..+. ...++.. ++....+
T Consensus 90 ~~~~~~~~~la~~~~~~G~----------------------~~~A~~~~~~al~~~---~~~~~~~-------~~~~~~~ 137 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGF----------------------LQTAWETQEKAFQLI---NEQHLEQ-------LPMHEFL 137 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTC----------------------HHHHHHHHHHHHHHH---HHTTCTT-------STHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCC----------------------HHHHHHHHHHHHHHH---HHhcccc-------CcHHHHH
Confidence 11123333444444443 443333333332222 1222210 1223455
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
..++|.+|..+|+|++|+.+|++++++.. . .+. +. ...++.+||.++..+|++++|+.+|++++.
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~---~------~~~----~~--~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLS---S------YQP----QQ--QLQCLAMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTT---T------SCG----GG--GHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhh---c------cCc----HH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66789999999999999999999999932 1 110 11 235678999999999999999999999999
Q ss_pred HHHHhhCCCChh-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHH
Q 013867 303 KTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAE 381 (435)
Q Consensus 303 I~e~~lG~~HP~-va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yae 381 (435)
+.... +. ++. .+.....++.+|..+|++++| +.++++++++. ++..+. ....+.+++.++..+|+|++
T Consensus 203 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~g~~~~A------~~~~~~a~~~~--~~~~~~-~~~~~~~la~~~~~~g~~~~ 271 (373)
T 1hz4_A 203 LLGNG-KY-HSDWISNANKVRVIYWQMTGDKAAA------ANWLRHTAKPE--FANNHF-LQGQWRNIARAQILLGEFEP 271 (373)
T ss_dssp HHTTS-CC-CHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHSCCCC--CTTCGG-GHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcc-Cc-chhHHHHHHHHHHHHHHHCCCHHHH------HHHHHhCCCCC--CCcchh-hHHHHHHHHHHHHHcCCHHH
Confidence 86542 21 222 222223566779999998776 78888887543 111121 12245678999999999999
Q ss_pred HhhHhhhhhhH----------HHHHHHHHHHHhcccchhHHH
Q 013867 382 ALSVQQNRKDE----------GERMKRWAEAAWRNRRVSLAE 413 (435)
Q Consensus 382 al~~~~~r~~e----------ae~~~~~a~~~~~~~r~~l~~ 413 (435)
|+.....-... .+.+...+..+|..++...+.
T Consensus 272 A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 272 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 313 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 98866332222 234555778888777765544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-17 Score=182.93 Aligned_cols=171 Identities=13% Similarity=0.128 Sum_probs=132.7
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
+|+.+..+.++|..+. .+|+|++|+..|+++|++. |+-+..++|||.+|.++|+|++|++.|++++++
T Consensus 5 ~P~~a~al~nLG~~~~----~~G~~~eAi~~~~kAl~l~--------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l 72 (723)
T 4gyw_A 5 CPTHADSLNNLANIKR----EQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 72 (723)
T ss_dssp -CHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5667777777777773 2577888888888887664 445677778888888888888887777776321
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
.|
T Consensus 73 ----------------------~P-------------------------------------------------------- 74 (723)
T 4gyw_A 73 ----------------------SP-------------------------------------------------------- 74 (723)
T ss_dssp ----------------------CT--------------------------------------------------------
T ss_pred ----------------------CC--------------------------------------------------------
Confidence 11
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
....+..++|.+|..+|+|++|+..|+|||++ . |. ...+++|||.+|..+|+|++|+..|
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l---~------P~-----------~~~a~~~Lg~~~~~~g~~~eAi~~~ 134 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQI---N------PA-----------FADAHSNLASIHKDSGNIPEAIASY 134 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C------TT-----------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C------CC-----------CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 12234556788889999999999999999998 1 11 1246889999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++||++ .|+...++.|||.+|..+|++++| +..|++++++.
T Consensus 135 ~~Al~l--------~P~~~~a~~~L~~~l~~~g~~~~A------~~~~~kal~l~ 175 (723)
T 4gyw_A 135 RTALKL--------KPDFPDAYCNLAHCLQIVCDWTDY------DERMKKLVSIV 175 (723)
T ss_dssp HHHHHH--------CSCCHHHHHHHHHHHHHTTCCTTH------HHHHHHHHHHH
T ss_pred HHHHHh--------CCCChHHHhhhhhHHHhcccHHHH------HHHHHHHHHhC
Confidence 999987 466677899999999999998876 89999999987
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9e-17 Score=163.53 Aligned_cols=296 Identities=13% Similarity=0.052 Sum_probs=194.5
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
.+..+..+.+.|..+.+ .|+|++|+.+|++++.+. |.....+.++|.+|..+|+|++|++.|++++.+
T Consensus 21 ~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 88 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFT----AKNFNEAIKYYQYAIELD--------PNEPVFYSNISACYISTGDLEKVIEFTTKALEI 88 (537)
T ss_dssp HHHHHHHHHHHHHHHHH----TTCCC-CHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 35578888999999853 689999999999999765 455788999999999999999999999999887
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH------------------------HHhcCCC-----------
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQL------------------------CEKHKPE----------- 182 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l------------------------~~~~~~~----------- 182 (435)
.+.. ..++..++.++..+|.+..|..... .+.+ +......
T Consensus 89 ~p~~----~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 163 (537)
T 3fp2_A 89 KPDH----SKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163 (537)
T ss_dssp CTTC----HHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCC
T ss_pred CCch----HHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch
Confidence 6543 2345566677778888777765442 1100 0000000
Q ss_pred -------------------------------------------chhc-hhhHHHHHHHHHHHHHHhcCCCcccccccccc
Q 013867 183 -------------------------------------------NYKT-YGAVNSRANAVKGLVELAHGNLESGLQEEEGC 218 (435)
Q Consensus 183 -------------------------------------------~~~e-aeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~ 218 (435)
..+. .++...+.+|+...-+.+.-+ |... .....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~-~~~~~ 241 (537)
T 3fp2_A 164 NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDD-PLREN 241 (537)
T ss_dssp HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHH
T ss_pred HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcc-hhhHH
Confidence 0000 011112233333222222111 1100 00111
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
.+.+...+|.++..+|+|++|+.+|++++.+. |+ ..++.++|.+|..+|+|++|..+|+
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~------------------~~---~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLH------------------PT---PNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------CC---HHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC------------------CC---chHHHHHHHHHHHhcCHHHHHHHHH
Confidence 23455667788889999999999999999871 11 1356788889999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcC
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG 378 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ 378 (435)
+++.+ +|+...++.++|.+|..+|++++| +..|++++++. |+++ ....+++.++..+|+
T Consensus 301 ~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~a~~~~----~~~~---~~~~~la~~~~~~g~ 359 (537)
T 3fp2_A 301 KAVDL--------NPEYPPTYYHRGQMYFILQDYKNA------KEDFQKAQSLN----PENV---YPYIQLACLLYKQGK 359 (537)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTCS---HHHHHHHHHHHHTTC
T ss_pred HHhcc--------CCCCHHHHHHHHHHHHhcCCHHHH------HHHHHHHHHhC----CCCH---HHHHHHHHHHHHcCC
Confidence 98875 344556688899999999987766 78888888864 2222 456678888888899
Q ss_pred HHHHhhHhhhhhhH----HHHHHHHHHHHhcccchhHHHH
Q 013867 379 YAEALSVQQNRKDE----GERMKRWAEAAWRNRRVSLAEA 414 (435)
Q Consensus 379 yaeal~~~~~r~~e----ae~~~~~a~~~~~~~r~~l~~~ 414 (435)
|++|+.....-... .+.+...+..+...+++..|..
T Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 98888776332222 3556667777777777665543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7e-16 Score=156.93 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=117.9
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|....+...+|.+|..+|+|++|+.+|++++.+. . ... .++.++|.+|..+|+|++|+.+
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~------~~~-----------~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN---P------ENV-----------YPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------TCS-----------HHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---C------CCH-----------HHHHHHHHHHHHcCCHHHHHHH
Confidence 5556778889999999999999999999999881 1 111 3578999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
|++++.+ +|+...++.++|.+|..+|++++| +..|++++++......-+-. ...+.+++.++..+
T Consensus 367 ~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~a~~~~~~~~~~~~~-~~~~~~~a~~~~~~ 431 (537)
T 3fp2_A 367 FNETKLK--------FPTLPEVPTFFAEILTDRGDFDTA------IKQYDIAKRLEEVQEKIHVG-IGPLIGKATILARQ 431 (537)
T ss_dssp HHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHCSSCSST-THHHHHHHHHHHHH
T ss_pred HHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHH------HHHHHHHHHcCCcchhhHHH-HHHHHHHHHHHHHH
Confidence 9999987 455566889999999999998876 88999999987322111111 12334566777777
Q ss_pred ----------cCHHHHhhHhhhhhhH----HHHHHHHHHHHhcccchhHH
Q 013867 377 ----------GGYAEALSVQQNRKDE----GERMKRWAEAAWRNRRVSLA 412 (435)
Q Consensus 377 ----------G~yaeal~~~~~r~~e----ae~~~~~a~~~~~~~r~~l~ 412 (435)
|+|++|+..+.+-... .+.+...+..+++.+++..|
T Consensus 432 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 432 SSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence 8888887766332221 45566666666666665544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.5e-17 Score=156.66 Aligned_cols=145 Identities=10% Similarity=0.045 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM-GNFGDAEEILTRT 300 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q-G~y~eAe~l~~rA 300 (435)
+..++|.+|..+|+|++|+.+|++|++|..+. + . +. ....++++||.+|..+ |+|++|+.+|++|
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-g---~---------~~-~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A 144 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-G---Q---------FR-RGANFKFELGEILENDLHDYAKAIDCYELA 144 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T---C---------HH-HHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-C---C---------HH-HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 44567888999999999999999999996431 1 1 10 1234688999999997 9999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHH
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYA 380 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ya 380 (435)
+.+.... .+++..+.+++++|.+|..+|+|++| ...|++++++....+..+..+...+.|++.++..+|+|.
T Consensus 145 l~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 216 (292)
T 1qqe_A 145 GEWYAQD--QSVALSNKCFIKCADLKALDGQYIEA------SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV 216 (292)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHH
Confidence 9998742 12334578899999999999998876 899999999873221111234446789999999999999
Q ss_pred HHhhHhhh
Q 013867 381 EALSVQQN 388 (435)
Q Consensus 381 eal~~~~~ 388 (435)
+|+..+.+
T Consensus 217 ~A~~~~~~ 224 (292)
T 1qqe_A 217 AAARTLQE 224 (292)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHHH
Confidence 99887644
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=161.30 Aligned_cols=231 Identities=11% Similarity=0.005 Sum_probs=157.9
Q ss_pred CCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 56 ~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
|+-++-|...-+.|....+ ..|+|++|+..|++++.+..+. .+++..+.+++++|.+|..+|+|++|++.|++++
T Consensus 30 ~~~~~~A~~~~~~a~~~~~---~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 104 (292)
T 1qqe_A 30 SYKFEEAADLCVQAATIYR---LRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4434455555555543323 3689999999999999987654 3556788999999999999999999999999885
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc
Q 013867 136 NFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE 215 (435)
Q Consensus 136 ~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~ 215 (435)
.+... .|.. .
T Consensus 105 ~l~~~------------------~g~~----------------------~------------------------------ 114 (292)
T 1qqe_A 105 QIFTH------------------RGQF----------------------R------------------------------ 114 (292)
T ss_dssp HHHHH------------------TTCH----------------------H------------------------------
T ss_pred HHHHH------------------cCCH----------------------H------------------------------
Confidence 43211 1110 0
Q ss_pred ccchhHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHH
Q 013867 216 EGCTGSAALSYGEYLHAT-RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE 294 (435)
Q Consensus 216 ~~~~~~~a~~la~~~~~~-G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe 294 (435)
....+..++|.+|..+ |+|++|+.+|++|+++..... + + .....+++++|.+|..+|+|++|.
T Consensus 115 --~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~----~---------~-~~~~~~~~~lg~~~~~~g~~~~A~ 178 (292)
T 1qqe_A 115 --RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ----S---------V-ALSNKCFIKCADLKALDGQYIEAS 178 (292)
T ss_dssp --HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT----C---------H-HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC----C---------h-HHHHHHHHHHHHHHHHhCCHHHHH
Confidence 0012344567888896 999999999999999964211 0 0 012346789999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHH
Q 013867 295 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVAL 374 (435)
Q Consensus 295 ~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~ 374 (435)
.+|++++.+.... +.-+..+...+.++|.+|..+|++++| +..|++++++....+. ..-...+.++...+.
T Consensus 179 ~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~l~p~~~~--~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 179 DIYSKLIKSSMGN-RLSQWSLKDYFLKKGLCQLAATDAVAA------ARTLQEGQSEDPNFAD--SRESNFLKSLIDAVN 249 (292)
T ss_dssp HHHHHHHHTTSSC-TTTGGGHHHHHHHHHHHHHHTTCHHHH------HHHHHGGGCC-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CcccHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhCCCCCC--cHHHHHHHHHHHHHH
Confidence 9999999874221 111234667899999999999998776 8999999887632211 111234445555554
Q ss_pred --HhcCHHHHhhHh
Q 013867 375 --ARGGYAEALSVQ 386 (435)
Q Consensus 375 --a~G~yaeal~~~ 386 (435)
..++|.+|+..+
T Consensus 250 ~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 250 EGDSEQLSEHCKEF 263 (292)
T ss_dssp TTCTTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHh
Confidence 456788888877
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=181.00 Aligned_cols=166 Identities=16% Similarity=0.117 Sum_probs=138.5
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
+.+|.-+.+++|||.+|.++|+|++|++.|++++++ .|+
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----------------------~P~------------------- 41 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV----------------------FPE------------------- 41 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------CSC-------------------
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCC-------------------
Confidence 568999999999999999999999999999998432 222
Q ss_pred CchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 182 ENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
...+..++|.+|..+|+|++|+..|++||++ . |.
T Consensus 42 -------------------------------------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~------P~ 75 (723)
T 4gyw_A 42 -------------------------------------FAAAHSNLASVLQQQGKLQEALMHYKEAIRI---S------PT 75 (723)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C------TT
T ss_pred -------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C------CC
Confidence 1123446788899999999999999999998 1 11
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQ 341 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~A 341 (435)
...+++|||.+|..+|+|++|++.|++|+++ +|+.+.+++|||.+|..+|++++|
T Consensus 76 -----------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eA------ 130 (723)
T 4gyw_A 76 -----------FADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEA------ 130 (723)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------
T ss_pred -----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHH------
Confidence 1247899999999999999999999999987 677788999999999999998876
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 342 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 342 e~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
+..|++||++. |+....+.|++.++..+|+|++|...+
T Consensus 131 i~~~~~Al~l~-------P~~~~a~~~L~~~l~~~g~~~~A~~~~ 168 (723)
T 4gyw_A 131 IASYRTALKLK-------PDFPDAYCNLAHCLQIVCDWTDYDERM 168 (723)
T ss_dssp HHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHHHHHHHhC-------CCChHHHhhhhhHHHhcccHHHHHHHH
Confidence 89999999985 455567889999999999999987765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-16 Score=154.12 Aligned_cols=262 Identities=12% Similarity=0.004 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~ 140 (435)
.+..+.++|..+.. .|+|++|+.+|++++.+..+. .+....+.+++++|.+|..+|+|++|++.|++++.+.+.
T Consensus 52 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 125 (373)
T 1hz4_A 52 RIVATSVLGEVLHC----KGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 125 (373)
T ss_dssp HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45567778877743 689999999999999987664 334467888999999999999999999999999877654
Q ss_pred hHHH----HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccc
Q 013867 141 ILGV----RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEE 216 (435)
Q Consensus 141 ~L~i----~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~ 216 (435)
.-+. ...++.+++.++..+|+ +++|...+.. ++.. ..+.. +
T Consensus 126 ~~~~~~~~~~~~~~~la~~~~~~g~----------------------~~~A~~~~~~--al~~-----~~~~~------~ 170 (373)
T 1hz4_A 126 QHLEQLPMHEFLVRIRAQLLWAWAR----------------------LDEAEASARS--GIEV-----LSSYQ------P 170 (373)
T ss_dssp TTCTTSTHHHHHHHHHHHHHHHTTC----------------------HHHHHHHHHH--HHHH-----TTTSC------G
T ss_pred hccccCcHHHHHHHHHHHHHHHhcC----------------------HHHHHHHHHH--HHHH-----hhccC------c
Confidence 3110 01122223333333333 4433333222 2221 11110 0
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
+....+..+++.++..+|++++|..++++++++.. . .+. +..........++.++..+|++++|+.+
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~---~-~~~---------~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 237 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG---N-GKY---------HSDWISNANKVRVIYWQMTGDKAAAANW 237 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT---T-SCC---------CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh---c-cCc---------chhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 11334566788999999999999999999999942 1 011 0000111112456779999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
+++++.+. .+..|. ....+.++|.+|..+|++++| ..++++++++.+..+. .++......+++.++..+
T Consensus 238 ~~~a~~~~---~~~~~~-~~~~~~~la~~~~~~g~~~~A------~~~l~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 238 LRHTAKPE---FANNHF-LQGQWRNIARAQILLGEFEPA------EIVLEELNENARSLRL-MSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp HHHSCCCC---CTTCGG-GHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCC---CCcchh-hHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHh
Confidence 99998743 222232 234678999999999998776 8999999999865432 234455677889999999
Q ss_pred cCHHHHhhHhh
Q 013867 377 GGYAEALSVQQ 387 (435)
Q Consensus 377 G~yaeal~~~~ 387 (435)
|++++|.....
T Consensus 307 g~~~~A~~~l~ 317 (373)
T 1hz4_A 307 GRKSDAQRVLL 317 (373)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999987653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-16 Score=158.95 Aligned_cols=276 Identities=12% Similarity=0.038 Sum_probs=197.3
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCC--CCCc----chHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDG--QLAE----SWRGISLLAMSTLLYESGNYVEAIEKLQ 132 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~l--G~~H----p~~A~~l~nLa~ly~~qGky~eA~~l~~ 132 (435)
|+.+......|..+.. ....|+|++|+.+|++++...+..+ .+++ |..+.++..+|.+|..+|+|++|++.|+
T Consensus 183 ~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 261 (514)
T 2gw1_A 183 SNEADKELMNGLSNLY-KRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIK 261 (514)
T ss_dssp SCHHHHHHHHHHHHHS-SCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH-hhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4456666777776532 1236899999999999998322211 2333 8889999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccc
Q 013867 133 KVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGL 212 (435)
Q Consensus 133 ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~ 212 (435)
+++.+... ..++..++..+..+|.+..|....+.++.+. +. ....+...+ .+....|+++.|.
T Consensus 262 ~~l~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~---~~~~~~~l~-----~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 262 KAIELFPR-----VNSYIYMALIMADRNDSTEYYNYFDKALKLD----SN---NSSVYYHRG-----QMNFILQNYDQAG 324 (514)
T ss_dssp HHHHHCCC-----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC----TT---CTHHHHHHH-----HHHHHTTCTTHHH
T ss_pred HHHhhCcc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC----cC---CHHHHHHHH-----HHHHHhCCHHHHH
Confidence 99887654 3345667778888998888877666554321 10 111111111 1122234444433
Q ss_pred ccc------ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH
Q 013867 213 QEE------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH 286 (435)
Q Consensus 213 ~~~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~ 286 (435)
..+ .|....+...+|.+|..+|+|++|+.+|++++++. . .. ...+.++|.+|..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~------~~-----------~~~~~~la~~~~~ 384 (514)
T 2gw1_A 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF---P------EA-----------PEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS---T------TC-----------SHHHHHHHHHHHH
T ss_pred HHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---c------cC-----------HHHHHHHHHHHHH
Confidence 211 24445677888999999999999999999999871 1 11 1357899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHH---hhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchh
Q 013867 287 MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN---KAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 363 (435)
Q Consensus 287 qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~---qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a 363 (435)
+|+|++|+.+|++++.+.... ++....+.++.++|.+|.. +|++++| ...|++++++. |+..
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~A------~~~~~~a~~~~-------~~~~ 449 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKL--DGIYVGIAPLVGKATLLTRNPTVENFIEA------TNLLEKASKLD-------PRSE 449 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSCCTTHHHHH------HHHHHHHHHHC-------TTCH
T ss_pred CCCHHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhcCCHHHH------HHHHHHHHHhC-------cccH
Confidence 999999999999999875321 1112235589999999999 9998776 89999999874 3334
Q ss_pred hhhccHHHHHHHhcCHHHHhhHhh
Q 013867 364 TKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 364 ~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
....+++.++..+|+|.+|...+.
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHH
Confidence 566789999999999999988764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-15 Score=153.09 Aligned_cols=262 Identities=14% Similarity=0.057 Sum_probs=185.2
Q ss_pred chHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhhhhhH----------HHHHHHHHHHHHHHHhcCCCcchHHHHHH
Q 013867 105 SWRGISLLAMSTLLYE---SGNYVEAIEKLQKVENFKNSIL----------GVRVAAMEALAGLYLQLGQDDTSSVVADK 171 (435)
Q Consensus 105 p~~A~~l~nLa~ly~~---qGky~eA~~l~~ral~i~e~~L----------~i~vaale~L~g~~~~~g~~~~A~~~~~~ 171 (435)
|+....+..+|..+.. +|+|++|++.|++++...+..+ .....++..++..+...|.+..|....+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 262 (514)
T 2gw1_A 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK 262 (514)
T ss_dssp SCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3447778888888876 9999999999999988432222 22234566777888888988877766665
Q ss_pred HHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc------ccchhHHHHHHHHHHHHhhchHHHHHHHHH
Q 013867 172 CLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE------EGCTGSAALSYGEYLHATRNFLLAKKFYQK 245 (435)
Q Consensus 172 ~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~------~~~~~~~a~~la~~~~~~G~y~eAe~ly~r 245 (435)
++... + +...+... +.+....|+++.|...+ .|....+...++.+|..+|+|++|+.+|++
T Consensus 263 ~l~~~----~----~~~~~~~l-----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (514)
T 2gw1_A 263 AIELF----P----RVNSYIYM-----ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDK 329 (514)
T ss_dssp HHHHC----C----CHHHHHHH-----HHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHhhC----c----cHHHHHHH-----HHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 54331 1 01222111 12223446666554322 345566778899999999999999999999
Q ss_pred HHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 013867 246 VIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM 325 (435)
Q Consensus 246 AL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~l 325 (435)
++++. + .. ..++.++|.+|..+|+|++|..+|++++.+ +|+...++.++|.+
T Consensus 330 ~~~~~--------~-~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~ 381 (514)
T 2gw1_A 330 AKELD--------P-EN-----------IFPYIQLACLAYRENKFDDCETLFSEAKRK--------FPEAPEVPNFFAEI 381 (514)
T ss_dssp HHHTC--------S-SC-----------SHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHH
T ss_pred HHHhC--------h-hh-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------cccCHHHHHHHHHH
Confidence 99871 1 11 135789999999999999999999999976 44455689999999
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHH---hcCHHHHhhHhhhhhh----HHHHHHH
Q 013867 326 FRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA---RGGYAEALSVQQNRKD----EGERMKR 398 (435)
Q Consensus 326 y~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a---~G~yaeal~~~~~r~~----eae~~~~ 398 (435)
|..+|++++| +..|++++++.... ++.......+.+++.++.. +|+|++|+..+..-.. -.+.+..
T Consensus 382 ~~~~~~~~~A------~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 454 (514)
T 2gw1_A 382 LTDKNDFDKA------LKQYDLAIELENKL-DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG 454 (514)
T ss_dssp HHHTTCHHHH------HHHHHHHHHHHHTS-SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHCCCHHHH------HHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 9999998776 89999999987432 1111223467789999999 9999999887643222 2466667
Q ss_pred HHHHHhcccchhHHHH
Q 013867 399 WAEAAWRNRRVSLAEA 414 (435)
Q Consensus 399 ~a~~~~~~~r~~l~~~ 414 (435)
.+..+++.+++..|..
T Consensus 455 la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCHHHHHH
Confidence 8888888777665543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.9e-17 Score=149.71 Aligned_cols=237 Identities=14% Similarity=0.076 Sum_probs=167.5
Q ss_pred HHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH
Q 013867 64 QMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG 143 (435)
Q Consensus 64 ~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~ 143 (435)
.+.++|..+. ..|+|++|+.+|++++.+.. .....+.++|.+|..+|+|++|++.|++++....
T Consensus 5 ~~~~~a~~~~----~~~~~~~A~~~~~~~l~~~p--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---- 68 (272)
T 3u4t_A 5 VEFRYADFLF----KNNNYAEAIEVFNKLEAKKY--------NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN---- 68 (272)
T ss_dssp CHHHHHHHHH----TTTCHHHHHHHHHHHHHTTC--------CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHHHH----HhcCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC----
Confidence 4567777774 36899999999999997653 2334788999999999999999999999866221
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHH
Q 013867 144 VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAA 223 (435)
Q Consensus 144 i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a 223 (435)
.+...+. .......++...+. +++| +....+++.. . |....+.
T Consensus 69 ----------------~~~~~~~-~~~~lg~~~~~~~~--~~~A--~~~~~~a~~~-----~-----------~~~~~~~ 111 (272)
T 3u4t_A 69 ----------------ATKAKSA-DFEYYGKILMKKGQ--DSLA--IQQYQAAVDR-----D-----------TTRLDMY 111 (272)
T ss_dssp ----------------TTTCCHH-HHHHHHHHHHHTTC--HHHH--HHHHHHHHHH-----S-----------TTCTHHH
T ss_pred ----------------chhHHHH-HHHHHHHHHHHccc--HHHH--HHHHHHHHhc-----C-----------cccHHHH
Confidence 1111111 11122233333232 4333 3233333331 1 2334577
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
.++|.+|..+|+|++|+.+|++++++ . + . ....+.++|.....+++|++|+..|++++.+
T Consensus 112 ~~l~~~~~~~~~~~~A~~~~~~al~~---~-----~-~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 112 GQIGSYFYNKGNFPLAIQYMEKQIRP---T-----T-T-----------DPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHGGGCCS---S-----C-C-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHhhc---C-----C-C-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999977 1 1 1 1246789994444566999999999999987
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHHhhh---hhhhhhhHHHHHHHHHHHHHhcCC-CCCCCchhhhhccHHHHHHHhcCH
Q 013867 304 TEELFGSHHPKVGVVLTCLALMFRNKAM---QEHSSALLIQEGLYRRALEFLKAP-PLESEGVETKVDRTDIVALARGGY 379 (435)
Q Consensus 304 ~e~~lG~~HP~va~~L~nLA~ly~~qG~---~e~A~~~~~Ae~Ly~rAL~I~k~~-~~~hp~~a~~l~nla~~~~a~G~y 379 (435)
+|+....+.++|.+|..+|+ +++| ...|++++++.+.. .++.+.......+++.++..+|+|
T Consensus 172 --------~p~~~~~~~~~~~~~~~~~~~~~~~~A------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 172 --------KPNIYIGYLWRARANAAQDPDTKQGLA------KPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp --------STTCHHHHHHHHHHHHHHSTTCSSCTT------HHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred --------CccchHHHHHHHHHHHHcCcchhhHHH------HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 45557889999999999998 7666 89999999999542 222222456777899999999999
Q ss_pred HHHhhHhh
Q 013867 380 AEALSVQQ 387 (435)
Q Consensus 380 aeal~~~~ 387 (435)
++|+..+.
T Consensus 238 ~~A~~~~~ 245 (272)
T 3u4t_A 238 VKADAAWK 245 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888763
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=154.84 Aligned_cols=218 Identities=13% Similarity=0.075 Sum_probs=159.1
Q ss_pred HcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHH
Q 013867 120 ESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKG 199 (435)
Q Consensus 120 ~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~ 199 (435)
.+|+|++|+++++++.+...+.+ ++ -.+.+..|...++.+..++...+. |.+|... +.+++..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~----------~~---~~~~~~~A~~~~~~a~~~~~~~g~--~~~A~~~--~~~al~~ 65 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSF----------MK---WKPDYDSAASEYAKAAVAFKNAKQ--LEQAKDA--YLQEAEA 65 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCS----------SS---CSCCHHHHHHHHHHHHHHHHHTTC--HHHHHHH--HHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccc----------cC---CCCCHHHHHHHHHHHHHHHHHcCC--HHHHHHH--HHHHHHH
Confidence 47899999999999876544321 10 025556677777777777766553 6655444 4444443
Q ss_pred HHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHH
Q 013867 200 LVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA 279 (435)
Q Consensus 200 ~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~n 279 (435)
. ..+ ++. .....+..++|.+|..+|+|++|+.+|++|++|..+ .+ . +. ....++++
T Consensus 66 ~-~~~-~~~--------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~-~g---~---------~~-~~a~~~~~ 121 (307)
T 2ifu_A 66 H-ANN-RSL--------FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE-NG---T---------PD-TAAMALDR 121 (307)
T ss_dssp H-HHT-TCH--------HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT-TT---C---------HH-HHHHHHHH
T ss_pred H-HHc-CCH--------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cC---C---------HH-HHHHHHHH
Confidence 2 122 221 123456677889999999999999999999999642 11 1 11 12357889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q 013867 280 LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLES 359 (435)
Q Consensus 280 La~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~h 359 (435)
||.+|.. |+|++|+.+|++|+.+.+.. .+++..+.+++|+|.+|..+|+|++| ...|++++++....+. +
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~~~~~~-~ 191 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQAAELIGKASRLLVRQQKFDEA------AASLQKEKSMYKEMEN-Y 191 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHTTC-H
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHHHHcCC-h
Confidence 9999999 99999999999999999872 23456789999999999999998877 8999999999864332 3
Q ss_pred CchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 360 EGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 360 p~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
+.....+.+++.++..+|+|.+|+..+.+
T Consensus 192 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 192 PTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44566778899999999999999887654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-16 Score=138.33 Aligned_cols=169 Identities=17% Similarity=0.207 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchh
Q 013867 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYK 185 (435)
Q Consensus 106 ~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ 185 (435)
.+++++++||.+|..+|+|++|++.|++++++.+... .++..++.+|..+|....
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~--------------------- 57 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV----ETLLKLGKTYMDIGLPND--------------------- 57 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHH---------------------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHH---------------------
Confidence 4678999999999999999999999999977654432 233344444444443322
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 013867 186 TYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC 265 (435)
Q Consensus 186 eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~ 265 (435)
+ +....+++. .. +....+...++.++..+++|++|...+++++.+. . .
T Consensus 58 -a--~~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~---~------~---- 105 (184)
T 3vtx_A 58 -A--IESLKKFVV-----LD-----------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN---T------V---- 105 (184)
T ss_dssp -H--HHHHHHHHH-----HC-----------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------T----
T ss_pred -H--HHHHHHHHh-----cC-----------chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---c------c----
Confidence 2 212222222 11 2334566677888999999999999999999881 1 1
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 013867 266 NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLY 345 (435)
Q Consensus 266 ~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly 345 (435)
...+..++|.+|..+|+|++|+..|++++++ +|+...++.++|.+|..+|++++| +..|
T Consensus 106 -------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~lg~~~~~~g~~~~A------~~~~ 164 (184)
T 3vtx_A 106 -------YADAYYKLGLVYDSMGEHDKAIEAYEKTISI--------KPGFIRAYQSIGLAYEGKGLRDEA------VKYF 164 (184)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHH
T ss_pred -------chHHHHHHHHHHHHhCCchhHHHHHHHHHHh--------cchhhhHHHHHHHHHHHCCCHHHH------HHHH
Confidence 1145789999999999999999999999987 577778999999999999998877 8999
Q ss_pred HHHHHHh
Q 013867 346 RRALEFL 352 (435)
Q Consensus 346 ~rAL~I~ 352 (435)
++||++-
T Consensus 165 ~~al~~~ 171 (184)
T 3vtx_A 165 KKALEKE 171 (184)
T ss_dssp HHHHHTT
T ss_pred HHHHhCC
Confidence 9999875
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-15 Score=147.15 Aligned_cols=200 Identities=11% Similarity=0.047 Sum_probs=150.4
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
.|+....+.+.+..+. .+|+|++|+..|++++.+.... ++.+..+..+..+|.+|..+|+|++|++.|++++.+
T Consensus 71 ~~~~~~~l~~~~~~~~----~~~~y~~A~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 144 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLC----KQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ 144 (293)
T ss_dssp HHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHH----HhhhHHHHHHHHHHHhccccCC--hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4555566666666663 3678999999999999876542 333456677888999999999999999999887543
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
..+. .+ .+
T Consensus 145 ~~~~-------------------~~--------------------~~--------------------------------- 152 (293)
T 2qfc_A 145 QLTG-------------------ID--------------------VY--------------------------------- 152 (293)
T ss_dssp CCCS-------------------SC--------------------TT---------------------------------
T ss_pred HhcC-------------------Cc--------------------hH---------------------------------
Confidence 2110 00 00
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
....+.+++|.+|..+|+|++|+.+|++|+++.+.... .......+++|+|.+|..+|+|++|..+|
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-------------~~~~~~~~~~nlg~~y~~~~~y~~Al~~~ 219 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-------------NEEFDVKVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-------------cccchHHHHHhHHHHHHHHhhHHHHHHHH
Confidence 01124456788899999999999999999999653211 11123357899999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
++|+.+..+ ..+++.++.+++|+|.+|..+|++++|. +..|++|++|.+..
T Consensus 220 ~kal~~~~~--~~~~~~~~~~~~~lg~~y~~~g~~~~Ai-----~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 220 NKAIEISCR--INSMALIGQLYYQRGECLRKLEYEEAEI-----EDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHHHH--TTBCSSHHHHHHHHHHHHHHTTCCHHHH-----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHh--cCcHHHHHHHHHHHHHHHHHcCCcHHHH-----HHHHHHHHHHHHHh
Confidence 999999854 5678889999999999999999987651 67799999999754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-15 Score=142.60 Aligned_cols=218 Identities=12% Similarity=0.091 Sum_probs=161.8
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
.|..+..+.+.|..+.+ .|+|++|+..|++++... |++|.....+.+||.+|..+|+|++|++.|++++.+
T Consensus 11 ~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 81 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYN----QGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI 81 (261)
T ss_dssp CCSSHHHHHHHHHHHHH----TTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 34456678888888843 689999999999999765 677888999999999999999999999999998543
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
.|....
T Consensus 82 ----------------------~p~~~~---------------------------------------------------- 87 (261)
T 3qky_A 82 ----------------------YQIDPR---------------------------------------------------- 87 (261)
T ss_dssp ----------------------CTTCTT----------------------------------------------------
T ss_pred ----------------------CCCCch----------------------------------------------------
Confidence 222100
Q ss_pred chhHHHHHHHHHHHH--------hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHH------------
Q 013867 218 CTGSAALSYGEYLHA--------TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT------------ 277 (435)
Q Consensus 218 ~~~~~a~~la~~~~~--------~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l------------ 277 (435)
...+...+|.++.. +|+|++|+..|++++.+. ++++. . ..++
T Consensus 88 -~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------p~~~~-~----------~~a~~~~~~~~~~~~~ 149 (261)
T 3qky_A 88 -VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY------PNHEL-V----------DDATQKIRELRAKLAR 149 (261)
T ss_dssp -HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC------TTCTT-H----------HHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC------cCchh-H----------HHHHHHHHHHHHHHHH
Confidence 00011122333333 899999999999999882 11111 1 1122
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh----hhhHHHHHHHHHHHHH
Q 013867 278 --FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS----SALLIQEGLYRRALEF 351 (435)
Q Consensus 278 --~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A----~~~~~Ae~Ly~rAL~I 351 (435)
.++|.+|..+|+|++|...|++++.+ -|++|.....+.++|.+|..+|..+.+ ..+.+|...|+++++.
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDA-----YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 78999999999999999999999985 478888999999999999988332110 1133448999998887
Q ss_pred hcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhH
Q 013867 352 LKAPPLESEGVETKVDRTDIVALARGGYAEALSV 385 (435)
Q Consensus 352 ~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~ 385 (435)
. |++|.+......++.++...|+++++..+
T Consensus 225 ~----p~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 225 F----PDSPLLRTAEELYTRARQRLTELEGDASL 254 (261)
T ss_dssp C----TTCTHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred C----CCChHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 6 77888777788888888888888776654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-16 Score=142.18 Aligned_cols=205 Identities=15% Similarity=0.155 Sum_probs=133.7
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
..-.+..+.++|..+. ..|+|++|+.+|++++.. .|.....+..+|.+|..+|+|++|+..|++++++
T Consensus 19 ~~~~~~~~~~~a~~~~----~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 86 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGS----EFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL 86 (243)
T ss_dssp ---------------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH----HhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3345566777777774 468999999999999963 3555788999999999999999999999998765
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
..... .++..++..+..+|. +++|.. ...+++.. . +
T Consensus 87 ~~~~~----~~~~~la~~~~~~~~----------------------~~~A~~--~~~~~~~~-----~-----------~ 122 (243)
T 2q7f_A 87 DSSAA----TAYYGAGNVYVVKEM----------------------YKEAKD--MFEKALRA-----G-----------M 122 (243)
T ss_dssp CTTCH----HHHHHHHHHHHHTTC----------------------HHHHHH--HHHHHHHH-----T-----------C
T ss_pred CCcch----HHHHHHHHHHHHhcc----------------------HHHHHH--HHHHHHHh-----C-----------C
Confidence 43221 112222222322222 333322 23333321 1 2
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
....+...+|.+|..+|+|++|+.+|++++++. . . ....+.++|.+|..+|+|++|+..|
T Consensus 123 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~------~-----------~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---E------N-----------DTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---T------T-----------CHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---C------c-----------cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 234566778999999999999999999999881 1 1 0135689999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++++.+ +|+...++.++|.+|..+|++++| ...|++++++.
T Consensus 183 ~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~ 223 (243)
T 2q7f_A 183 AAVTEQ--------DPGHADAFYNAGVTYAYKENREKA------LEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHH------HHHHHHHHHHC
T ss_pred HHHHHh--------CcccHHHHHHHHHHHHHccCHHHH------HHHHHHHHccC
Confidence 999986 355566899999999999998876 89999999875
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.8e-16 Score=147.93 Aligned_cols=215 Identities=10% Similarity=0.065 Sum_probs=155.1
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
.++....+.+.+..+. ..|+|++|+.+|++++...... ++....+..+.++|.+|..+|+|++|++.|++++.+
T Consensus 71 ~~~~~~~l~~~i~~~~----~~~~y~~a~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~ 144 (293)
T 3u3w_A 71 DIERKKQFKDQVIMLC----KQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ 144 (293)
T ss_dssp CHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHH----HHhhHHHHHHHHHHHhccccCC--hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 3556666666555553 3579999999999999754321 111223667778999999999999999999998543
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
... ..+ .+.
T Consensus 145 ~~~-------------------~~~--------------------~~~-------------------------------- 153 (293)
T 3u3w_A 145 QLT-------------------GID--------------------VYQ-------------------------------- 153 (293)
T ss_dssp CCC-------------------CSC--------------------TTH--------------------------------
T ss_pred hcc-------------------ccc--------------------HHH--------------------------------
Confidence 210 000 000
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
...+.+++|.+|..+|+|++|+.+|++|+++.++... . ......+++|+|.+|..+|+|++|..+|
T Consensus 154 -~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~---~----------~~~~~~~~~nlg~~y~~~~~y~~A~~~~ 219 (293)
T 3u3w_A 154 -NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD---N----------EEFDVKVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC---C----------HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc---c----------hhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 0124556788999999999999999999999654211 0 1123457899999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhh-hhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHH
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM-QEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVA 373 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~-~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~ 373 (435)
++|+.+..+. .+++.++.+++++|.+|..+|+ +++| ...|++|++|.+.. +.+.....+.+.....
T Consensus 220 ~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~~A------~~~~~~Al~i~~~~--~~~~~~~~l~~~~~~~ 286 (293)
T 3u3w_A 220 NKAIEISCRI--NSMALIGQLYYQRGECLRKLEYEEAEI------EDAYKKASFFFDIL--EMHAYKEALVNKISRL 286 (293)
T ss_dssp HHHHHHHHHT--TBCTTHHHHHHHHHHHHHHTTCCHHHH------HHHHHHHHHHHHHT--TCTGGGGGGTTC----
T ss_pred HHHHHHHHHc--CcHHHHHHHHHHHHHHHHHhCCcHHHH------HHHHHHHHHHHHHh--CCHHHHHHHHHHHHHH
Confidence 9999998875 5678899999999999999995 5766 89999999999864 3344555555444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-15 Score=137.22 Aligned_cols=208 Identities=9% Similarity=-0.013 Sum_probs=150.6
Q ss_pred CChHH-HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 57 NSNPV-VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (435)
Q Consensus 57 ~~~~v-A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral 135 (435)
..|.. +..+..+|..+.. .|+|++|+.+|++++.+. |.....+.++|.+|..+|+|++|++.|++++
T Consensus 31 ~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 98 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQ----RGNTEQAKVPLRKALEID--------PSSADAHAALAVVFQTEMEPKLADEEYRKAL 98 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHH----TTCTGGGHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444 8888999998853 689999999999999764 4457889999999999999999999999986
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc
Q 013867 136 NFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE 215 (435)
Q Consensus 136 ~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~ 215 (435)
.+..... .++..+ ..++...+. +++|... ..+++. .+.
T Consensus 99 ~~~~~~~----~~~~~l--------------------a~~~~~~g~--~~~A~~~--~~~~~~------~~~-------- 136 (252)
T 2ho1_A 99 ASDSRNA----RVLNNY--------------------GGFLYEQKR--YEEAYQR--LLEASQ------DTL-------- 136 (252)
T ss_dssp HHCTTCH----HHHHHH--------------------HHHHHHTTC--HHHHHHH--HHHHTT------CTT--------
T ss_pred HHCcCcH----HHHHHH--------------------HHHHHHHhH--HHHHHHH--HHHHHh------Ccc--------
Confidence 6533211 112222 222322221 3333222 222221 111
Q ss_pred ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013867 216 EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE 295 (435)
Q Consensus 216 ~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~ 295 (435)
.+....+...+|.+|..+|+|++|+.+|++++++. . . ...++.+||.+|..+|+|++|..
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~------~-----------~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---R------N-----------QPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---S------C-----------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---c------c-----------cHHHHHHHHHHHHHcCCHHHHHH
Confidence 13345667778999999999999999999999871 1 1 01356899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 296 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 296 l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+|++++.+ .|+....+..++.+|..+|++++| ..+|++++++.
T Consensus 197 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A------~~~~~~~~~~~ 239 (252)
T 2ho1_A 197 YYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTA------ASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC
T ss_pred HHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHH------HHHHHHHHHHC
Confidence 99999873 344556788999999999998776 88999998875
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.9e-15 Score=135.22 Aligned_cols=212 Identities=14% Similarity=0.102 Sum_probs=148.9
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch
Q 013867 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (435)
Q Consensus 105 p~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~ 184 (435)
++.+..+.++|..|..+|+|++|++.|++++.+. .. ..++..++..+..+|.+..|......++.+.....
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---- 72 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR---- 72 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc----
Confidence 4578899999999999999999999999997654 22 12334444445555544444333333222221110
Q ss_pred hchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--------------
Q 013867 185 KTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVL-------------- 250 (435)
Q Consensus 185 ~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~-------------- 250 (435)
.+ .+....+...+|.+|..+|+|++|+.+|++++.+.
T Consensus 73 ---------------------~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 123 (258)
T 3uq3_A 73 ---------------------AD--------YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEK 123 (258)
T ss_dssp ---------------------CC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ---------------------cc--------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHH
Confidence 00 01123455667778888888888888888888751
Q ss_pred -----HHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 013867 251 -----AEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM 325 (435)
Q Consensus 251 -----~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~l 325 (435)
++... . .|+ ....+.++|.+|..+|+|++|...|++++.+ +|+...++.++|.+
T Consensus 124 a~~~~~~~~~------~-----~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~ 182 (258)
T 3uq3_A 124 ELKKAEAEAY------V-----NPE--KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAA 182 (258)
T ss_dssp HHHHHHHHHH------C-----CHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH------c-----Ccc--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHH
Confidence 00000 0 122 2346789999999999999999999999986 35566889999999
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 326 FRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 326 y~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
|..+|++++| +..|++++++. |+....+.+++.++..+|+|.+|+..+.+
T Consensus 183 ~~~~~~~~~A------~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 183 LAKLMSFPEA------IADCNKAIEKD-------PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHTTCHHHH------HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhCCHHHH------HHHHHHHHHhC-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999998776 89999999875 33345677899999999999999887643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.5e-16 Score=160.72 Aligned_cols=221 Identities=11% Similarity=0.026 Sum_probs=160.5
Q ss_pred HHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 013867 84 QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNY-VEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQD 162 (435)
Q Consensus 84 eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky-~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~ 162 (435)
+...-+++++...++.. ...|..+..+.++|.+|..+|+| ++|++.|++++++.... ..++..++.+|..+|.
T Consensus 79 ~~~~~~~~al~~l~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~- 152 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVL-GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKGD- 152 (474)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCC-
Confidence 33444444444333222 34567899999999999999999 99999999997765432 1233444444444443
Q ss_pred cchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHh---------
Q 013867 163 DTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHAT--------- 233 (435)
Q Consensus 163 ~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~--------- 233 (435)
+++|.. .+.+++.. . |. ..+..++|.+|..+
T Consensus 153 ---------------------~~~A~~--~~~~al~~-----~-----------p~-~~~~~~lg~~~~~~~~~~~~~~~ 192 (474)
T 4abn_A 153 ---------------------VTSAHT--CFSGALTH-----C-----------KN-KVSLQNLSMVLRQLQTDSGDEHS 192 (474)
T ss_dssp ---------------------HHHHHH--HHHHHHTT-----C-----------CC-HHHHHHHHHHHTTCCCSCHHHHH
T ss_pred ---------------------HHHHHH--HHHHHHhh-----C-----------CC-HHHHHHHHHHHHHhccCChhhhh
Confidence 332222 22333321 1 22 35667788888888
Q ss_pred hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHH
Q 013867 234 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM--------GNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 234 G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q--------G~y~eAe~l~~rAL~I~e 305 (435)
|+|++|+.+|++|+++. + . ...++++||.+|..+ |+|++|+..|++|+.+
T Consensus 193 g~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-- 250 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMD--------V-L-----------DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV-- 250 (474)
T ss_dssp HHHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--
T ss_pred hhHHHHHHHHHHHHHhC--------C-C-----------CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--
Confidence 99999999999999981 1 1 124678999999999 9999999999999998
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhH
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSV 385 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~ 385 (435)
.|.+|+....+++||.+|..+|++++| +..|++|+++. |+......+++.++...|++++|+..
T Consensus 251 ---~p~~~~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~l~-------p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 251 ---DRKASSNPDLHLNRATLHKYEESYGEA------LEGFSQAAALD-------PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp ---CGGGGGCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCcccCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 232448899999999999999998876 89999999985 33345677899999999999999987
Q ss_pred hhh
Q 013867 386 QQN 388 (435)
Q Consensus 386 ~~~ 388 (435)
+.+
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-15 Score=140.83 Aligned_cols=189 Identities=14% Similarity=0.107 Sum_probs=142.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchh
Q 013867 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYK 185 (435)
Q Consensus 106 ~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ 185 (435)
..+..+.++|.+|..+|+|++|+..|++++.+ .|+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------------~p~----------------------- 37 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE----------------------NPQ----------------------- 37 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----------------------SSS-----------------------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCC-----------------------
Confidence 34557889999999999999999999887321 222
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 013867 186 TYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC 265 (435)
Q Consensus 186 eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~ 265 (435)
...+..++|.++..+|+|++|+..|++++++.
T Consensus 38 ---------------------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------- 69 (217)
T 2pl2_A 38 ---------------------------------DPEALYWLARTQLKLGLVNPALENGKTLVART--------------- 69 (217)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred ---------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------
Confidence 11233456777888999999999999999981
Q ss_pred cccchHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhh
Q 013867 266 NMALEEVALAATFALGQLEAHM-----------GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH 334 (435)
Q Consensus 266 ~~~~~~~~l~~l~nLa~ly~~q-----------G~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~ 334 (435)
|+ ...+..+||.+|..+ |+|++|+..|++++++ .|+-..++.++|.+|..+|++++
T Consensus 70 ---P~--~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 70 ---PR--YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp ---TT--CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ---CC--cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHH
Confidence 11 124678999999999 9999999999999997 56667889999999999999887
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhH----HHHHHHHHHHHhcccchh
Q 013867 335 SSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE----GERMKRWAEAAWRNRRVS 410 (435)
Q Consensus 335 A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~e----ae~~~~~a~~~~~~~r~~ 410 (435)
| +..|++|+++. +++ ....+++.++..+|+|++|+..+.+.... .+.+...+..+...+++.
T Consensus 137 A------~~~~~~al~~~-----~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 137 A------EASLKQALALE-----DTP---EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp H------HHHHHHHHHHC-----CCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----
T ss_pred H------HHHHHHHHhcc-----cch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH
Confidence 6 89999999986 233 35678999999999999999887554332 466777888888888866
Q ss_pred HHHH
Q 013867 411 LAEA 414 (435)
Q Consensus 411 l~~~ 414 (435)
.|..
T Consensus 203 ~A~~ 206 (217)
T 2pl2_A 203 EAAR 206 (217)
T ss_dssp ----
T ss_pred HHHH
Confidence 5543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.7e-15 Score=131.10 Aligned_cols=177 Identities=12% Similarity=0.139 Sum_probs=134.0
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
..|+|++|+.+++... .+.+..+.+++++|.+|..+|+|++|++.|++++.+.+..
T Consensus 4 ~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------- 59 (203)
T 3gw4_A 4 EAHDYALAERQAQALL--------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS---------------- 59 (203)
T ss_dssp ---CHHHHHHHHHHHH--------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----------------
T ss_pred ccccHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc----------------
Confidence 3689999999555442 1334789999999999999999999999999985543211
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFL 237 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~ 237 (435)
+.. +....+..++|.+|..+|+|+
T Consensus 60 --~~~------------------------------------------------------~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 60 --GDH------------------------------------------------------TAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CCH------------------------------------------------------HHHHHHHHHHHHHHHHTTCHH
T ss_pred --CCc------------------------------------------------------HHHHHHHHHHHHHHHHcCCHH
Confidence 100 001124455788889999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 013867 238 LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV 317 (435)
Q Consensus 238 eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~ 317 (435)
+|+.+|++++++.++.. +. + .....++++||.+|..+|+|++|+.+|++++.+.++. .+.+..+.
T Consensus 84 ~A~~~~~~al~~~~~~~---~~---------~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~ 148 (203)
T 3gw4_A 84 AARRCFLEERELLASLP---ED---------P-LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHHHHHHSC---CC---------H-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC---cc---------H-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHHH
Confidence 99999999999975311 11 0 0133578899999999999999999999999997653 34455788
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 318 VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 318 ~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
++.++|.+|..+|++++| ...|++|+++.+..
T Consensus 149 ~~~~la~~~~~~g~~~~A------~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEA------QQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcCHHHH------HHHHHHHHHHHHHc
Confidence 899999999999998876 89999999999754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=9.3e-16 Score=144.96 Aligned_cols=238 Identities=11% Similarity=0.030 Sum_probs=156.7
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~ 141 (435)
+..+..+|..+.+ .|+|++|+.+|++++.+. |....++.++|.+|..+|+|++|++.|++++.+....
T Consensus 55 ~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 122 (327)
T 3cv0_A 55 EEAWRSLGLTQAE----NEKDGLAIIALNHARMLD--------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 122 (327)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC--------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 3445567777743 589999999999999874 4457789999999999999999999999998765432
Q ss_pred HHHHHHH---------HHHHHHH--HHhcCCCcchHHHHHHH--------------HHHHHhcCCCchhchhhHHHHHHH
Q 013867 142 LGVRVAA---------MEALAGL--YLQLGQDDTSSVVADKC--------------LQLCEKHKPENYKTYGAVNSRANA 196 (435)
Q Consensus 142 L~i~vaa---------le~L~g~--~~~~g~~~~A~~~~~~~--------------~~l~~~~~~~~~~eaeal~~~a~A 196 (435)
....... ...+++. +..+|.+..|......+ ..++...+. +++|.. ...++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~--~~~~~ 198 (327)
T 3cv0_A 123 EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN--YDSAAA--NLRRA 198 (327)
T ss_dssp TTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHH--HHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc--HHHHHH--HHHHH
Confidence 1110000 0000011 22333333333322222 222222221 322222 22222
Q ss_pred HHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHH
Q 013867 197 VKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA 276 (435)
Q Consensus 197 i~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~ 276 (435)
+.. .|....+...+|.+|..+|+|++|+.+|++++++. . . ...+
T Consensus 199 ~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~------~-----------~~~~ 242 (327)
T 3cv0_A 199 VEL----------------RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN---P------G-----------YVRV 242 (327)
T ss_dssp HHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------T-----------CHHH
T ss_pred HHh----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---C------C-----------CHHH
Confidence 211 23445677888999999999999999999999881 1 1 1135
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh----HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK----VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~----va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.++|.+|..+|+|++|...|++++.+.....++.+.. ...++.++|.+|..+|++++| ...|+++++++
T Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~~l~~~ 316 (327)
T 3cv0_A 243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV------ELTYAQNVEPF 316 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH------HHHTTCCSHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH------HHHHHHHHHhc
Confidence 78999999999999999999999999865543333322 788999999999999998776 88999999988
Q ss_pred c-CCCC
Q 013867 353 K-APPL 357 (435)
Q Consensus 353 k-~~~~ 357 (435)
. ..++
T Consensus 317 ~~~~~~ 322 (327)
T 3cv0_A 317 AKEFGL 322 (327)
T ss_dssp HHHTTS
T ss_pred chhhhH
Confidence 4 3343
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.1e-15 Score=137.86 Aligned_cols=222 Identities=14% Similarity=0.168 Sum_probs=160.6
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE----SGNYVEAIEKLQKVENF 137 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~----qGky~eA~~l~~ral~i 137 (435)
+..+..+|..+.. .|+|++|+.+|++++. ++ -..++.+||.+|.. +|++++|+..|+++.++
T Consensus 6 ~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~-------~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 6 PKELVGLGAKSYK----EKDFTQAKKYFEKACD-------LK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 71 (273)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHH-------TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHh----CCCHHHHHHHHHHHHH-------CC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence 4566778888743 5799999999999997 22 23678999999999 99999999999998654
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
. ...++.+++..|.. |. ....++++| +..+.+++. . +
T Consensus 72 ~------~~~a~~~lg~~~~~-g~-----------------~~~~~~~~A--~~~~~~a~~-----~-~----------- 108 (273)
T 1ouv_A 72 N------YSNGCHLLGNLYYS-GQ-----------------GVSQNTNKA--LQYYSKACD-----L-K----------- 108 (273)
T ss_dssp T------CHHHHHHHHHHHHH-TS-----------------SSCCCHHHH--HHHHHHHHH-----T-T-----------
T ss_pred C------CHHHHHHHHHHHhC-CC-----------------CcccCHHHH--HHHHHHHHH-----c-C-----------
Confidence 2 11223333333322 00 001123333 333334333 1 1
Q ss_pred chhHHHHHHHHHHHH----hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH----cCC
Q 013867 218 CTGSAALSYGEYLHA----TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH----MGN 289 (435)
Q Consensus 218 ~~~~~a~~la~~~~~----~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~----qG~ 289 (435)
...+..++|.+|.. +|++++|+.+|++|++. + + ..+..+||.+|.. +|+
T Consensus 109 -~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~---~--------------~~a~~~lg~~~~~~~~~~~~ 165 (273)
T 1ouv_A 109 -YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-----N---D--------------GDGCTILGSLYDAGRGTPKD 165 (273)
T ss_dssp -CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----T---C--------------HHHHHHHHHHHHHTSSSCCC
T ss_pred -CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-----C---c--------------HHHHHHHHHHHHcCCCCCCC
Confidence 23567788999999 99999999999999975 1 0 1356899999999 999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHH----hhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhh
Q 013867 290 FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETK 365 (435)
Q Consensus 290 y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~----qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~ 365 (435)
+++|..+|++|+++ ++ ..++.+||.+|.. ++++++| ...|++++++- | ...
T Consensus 166 ~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~g~~~~~~~~~A------~~~~~~a~~~~-------~--~~a 220 (273)
T 1ouv_A 166 LKKALASYDKACDL-------KD---SPGCFNAGNMYHHGEGATKNFKEA------LARYSKACELE-------N--GGG 220 (273)
T ss_dssp HHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTCSSCCCHHHH------HHHHHHHHHTT-------C--HHH
T ss_pred HHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCccHHHH------HHHHHHHHhCC-------C--HHH
Confidence 99999999999975 23 4678999999999 9998776 89999999862 1 346
Q ss_pred hccHHHHHHH----hcCHHHHhhHhhh
Q 013867 366 VDRTDIVALA----RGGYAEALSVQQN 388 (435)
Q Consensus 366 l~nla~~~~a----~G~yaeal~~~~~ 388 (435)
..+++.++.. .|++++|+..+.+
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 6789999988 8888877776633
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=8.6e-15 Score=149.00 Aligned_cols=231 Identities=7% Similarity=-0.065 Sum_probs=168.1
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN-YVEAIEKLQKVEN 136 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGk-y~eA~~l~~ral~ 136 (435)
.|..+..+.+++..+. .+|+|++|+..|++++.+. |.-...++++|.+|..+|+ |++|+..|++++.
T Consensus 93 ~p~~~~a~~~lg~~~~----~~g~~~~Al~~~~~al~l~--------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQ----RDERSERAFKLTRDAIELN--------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp CHHHHHHHHHHHHHHH----HTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHH----HCCChHHHHHHHHHHHHhC--------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 4777888999998884 3689999999999999765 6678899999999999997 9999999999977
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccc
Q 013867 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEE 216 (435)
Q Consensus 137 i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~ 216 (435)
+..+.. .++.+++.++..+|. ++ +++..+.++|.. +
T Consensus 161 l~P~~~----~a~~~~g~~~~~~g~----------------------~~--eAl~~~~kal~l----------------d 196 (382)
T 2h6f_A 161 EQPKNY----QVWHHRRVLVEWLRD----------------------PS--QELEFIADILNQ----------------D 196 (382)
T ss_dssp HCTTCH----HHHHHHHHHHHHHTC----------------------CT--THHHHHHHHHHH----------------C
T ss_pred HCCCCH----HHHHHHHHHHHHccC----------------------HH--HHHHHHHHHHHh----------------C
Confidence 654432 123334444433333 33 233344454442 1
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH-cCCHHHH--
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH-MGNFGDA-- 293 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~-qG~y~eA-- 293 (435)
|....+..++|.++..+|+|++|+.+|+++|++ . |+ ...+++++|.+|.. .|++++|
T Consensus 197 P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l-----------~-------P~--~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 197 AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE-----------D-------VR--NNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----------C-------CC--CHHHHHHHHHHHHHhcCcchHHHH
Confidence 445567788999999999999999999999999 1 11 12468999999999 5555888
Q ss_pred ---HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh--hhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhcc
Q 013867 294 ---EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA--MQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDR 368 (435)
Q Consensus 294 ---e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG--~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~n 368 (435)
..+|++|+.+ .|+-..++++++.+|..+| ++++| ...++++ . ..|+....+.+
T Consensus 257 ~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~~~~~a------~~~~~~~-----~---~~p~~~~al~~ 314 (382)
T 2h6f_A 257 EREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLSKYPNL------LNQLLDL-----Q---PSHSSPYLIAF 314 (382)
T ss_dssp HHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGGGCHHH------HHHHHHH-----T---TTCCCHHHHHH
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCccchHHH------HHHHHHh-----c---cCCCCHHHHHH
Confidence 5899999986 4666779999999999988 45544 5555443 2 23444456777
Q ss_pred HHHHHHHhc--------C-HHHHhhHh
Q 013867 369 TDIVALARG--------G-YAEALSVQ 386 (435)
Q Consensus 369 la~~~~a~G--------~-yaeal~~~ 386 (435)
++.++..+| + +++|+.++
T Consensus 315 La~~~~~~~~~~~~~~~~~~~~A~~~~ 341 (382)
T 2h6f_A 315 LVDIYEDMLENQCDNKEDILNKALELC 341 (382)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHH
Confidence 888888875 2 46666665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.8e-15 Score=145.62 Aligned_cols=226 Identities=9% Similarity=0.093 Sum_probs=157.7
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCC---------CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQ---------LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAA 148 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG---------~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaa 148 (435)
.+|+|++|+..|+++++..+.... ...++...++.+||.+|.++|+|++|++.|++++.+....-.....
T Consensus 16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 94 (434)
T 4b4t_Q 16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTV- 94 (434)
T ss_dssp HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHH-
T ss_pred HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHH-
Confidence 368999999999999998776322 2245567789999999999999999999999997766443111100
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHH
Q 013867 149 MEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGE 228 (435)
Q Consensus 149 le~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~ 228 (435)
......+..+.. ....++++.. ....++.... ..+.. .....+..++|.
T Consensus 95 ------------------~~~~~~l~~~~~-~~~~~~~a~~--~~~~~~~~~~-~~~~~---------~~~~~~~~~la~ 143 (434)
T 4b4t_Q 95 ------------------KVLKTLIEKFEQ-VPDSLDDQIF--VCEKSIEFAK-REKRV---------FLKHSLSIKLAT 143 (434)
T ss_dssp ------------------HHHHHHHHHHCS-CCSCHHHHHH--HHHHHHHHHH-HSSCC---------SSHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHh-CCCCHHHHHH--HHHHHHHHHH-HhCcc---------HHHHHHHHHHHH
Confidence 111111211111 1122443333 2333333211 11111 223456778999
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013867 229 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 308 (435)
Q Consensus 229 ~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l 308 (435)
+|..+|+|++|.+++++++.+. .+..++ +. .+..+.++|.+|..+|+|++|..+|++++.+.....
T Consensus 144 ~~~~~g~~~~A~~~l~~~~~~~---~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 209 (434)
T 4b4t_Q 144 LHYQKKQYKDSLALINDLLREF---KKLDDK---------PS--LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY 209 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH---TTSSCS---------TH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHccChHHHHHHHHHHHHHH---Hhcccc---------hh--HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999984 321111 11 345788999999999999999999999999987753
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 013867 309 GSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP 356 (435)
Q Consensus 309 G~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~ 356 (435)
..+...+..+.++|.+|..+|+|++| ...|.++++++...+
T Consensus 210 -~~~~~~~~~~~~~g~~~~~~~~y~~A------~~~~~~a~~~~~~~~ 250 (434)
T 4b4t_Q 210 -CPTQTVAELDLMSGILHCEDKDYKTA------FSYFFESFESYHNLT 250 (434)
T ss_dssp -CCHHHHHHHHHHHHHHTTSSSCHHHH------HHHHHHHHHHHHHTT
T ss_pred -CchHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHhhhhh
Confidence 44566799999999999999998776 788999999986543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.7e-14 Score=124.96 Aligned_cols=215 Identities=13% Similarity=0.060 Sum_probs=151.1
Q ss_pred CChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 57 ~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
+.|..+..+..+|..+.+ .|+|++|+.+|++++.+. |....++..+|.+|..+|+|++|++.|++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 70 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMR----GQDYRQATASIEDALKSD--------PKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70 (225)
T ss_dssp -CCHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 457778888888988853 589999999999999764 34467899999999999999999999999866
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhc-CCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc
Q 013867 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKH-KPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE 215 (435)
Q Consensus 137 i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~-~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~ 215 (435)
+..... .++.. ...++... + .++++... ..+++. .+..
T Consensus 71 ~~~~~~----~~~~~--------------------l~~~~~~~~~--~~~~A~~~--~~~~~~------~~~~------- 109 (225)
T 2vq2_A 71 IKPDSA----EINNN--------------------YGWFLCGRLN--RPAESMAY--FDKALA------DPTY------- 109 (225)
T ss_dssp HCTTCH----HHHHH--------------------HHHHHHTTTC--CHHHHHHH--HHHHHT------STTC-------
T ss_pred hCCCCh----HHHHH--------------------HHHHHHHhcC--cHHHHHHH--HHHHHc------CcCC-------
Confidence 533221 11222 22333332 2 13333222 222221 1111
Q ss_pred ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013867 216 EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE 295 (435)
Q Consensus 216 ~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~ 295 (435)
+....+..++|.++..+|+|++|+.+|++++++. . . ...++.++|.+|..+|+|++|..
T Consensus 110 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~------~-----------~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 110 -PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ---P------Q-----------FPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp -SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---T------T-----------CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred -cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C------C-----------CchHHHHHHHHHHHcCCHHHHHH
Confidence 3344567788999999999999999999999871 1 1 01357899999999999999999
Q ss_pred HHHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchh
Q 013867 296 ILTRTLTKTEELFGS-HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 363 (435)
Q Consensus 296 l~~rAL~I~e~~lG~-~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a 363 (435)
+|++++.+. | +++. .+..++.+|...|++++| ..++++++.+. |+++.+.
T Consensus 169 ~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~a------~~~~~~~~~~~----p~~~~~~ 219 (225)
T 2vq2_A 169 YFKKYQSRV-----EVLQAD---DLLLGWKIAKALGNAQAA------YEYEAQLQANF----PYSEELQ 219 (225)
T ss_dssp HHHHHHHHH-----CSCCHH---HHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTCHHHH
T ss_pred HHHHHHHhC-----CCCCHH---HHHHHHHHHHhcCcHHHH------HHHHHHHHHhC----CCCHHHH
Confidence 999999863 3 4444 478889999999998766 66677666553 5566544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-14 Score=120.68 Aligned_cols=159 Identities=16% Similarity=0.211 Sum_probs=125.8
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCC
Q 013867 103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (435)
Q Consensus 103 ~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~ 182 (435)
+.+..+.++.++|.+|..+|+|++|++.|++++.+.++. +..
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------------------~~~-------------------- 45 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------------GDK-------------------- 45 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------TCH--------------------
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh------------------CCc--------------------
Confidence 456789999999999999999999999999985543211 100
Q ss_pred chhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCc
Q 013867 183 NYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL 262 (435)
Q Consensus 183 ~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l 262 (435)
. . ...+..++|.+|..+|+|++|+.+|++++++..+...
T Consensus 46 -~-------~--------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------- 84 (164)
T 3ro3_A 46 -A-------A--------------------------ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD------- 84 (164)
T ss_dssp -H-------H--------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred -h-------H--------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-------
Confidence 0 0 0123345677888999999999999999999643211
Q ss_pred ccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 013867 263 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQE 342 (435)
Q Consensus 263 ~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae 342 (435)
+ .....++.++|.+|..+|+|++|+.+|++++.+.++. .+++..+.++.++|.+|..+|++++| .
T Consensus 85 ------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A------~ 149 (164)
T 3ro3_A 85 ------R-AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQA------M 149 (164)
T ss_dssp ------H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHH------H
T ss_pred ------c-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHH------H
Confidence 1 1133567899999999999999999999999998775 35788999999999999999998776 8
Q ss_pred HHHHHHHHHhcCC
Q 013867 343 GLYRRALEFLKAP 355 (435)
Q Consensus 343 ~Ly~rAL~I~k~~ 355 (435)
..|++++++.+..
T Consensus 150 ~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 150 HFAEKHLEISREV 162 (164)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-14 Score=125.95 Aligned_cols=168 Identities=13% Similarity=0.068 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~ 140 (435)
.+....++|..+. .+|+|++|+..|++++++. |.-..++.+||.+|..+|++++|++.++++......
T Consensus 4 ~~~iy~~lG~~~~----~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~ 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKR----TKGDFDGAIRAYKKVLKAD--------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71 (184)
T ss_dssp CHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch
Confidence 4566788898883 3799999999999999774 455778999999999999999999999998554322
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchh
Q 013867 141 ILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTG 220 (435)
Q Consensus 141 ~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~ 220 (435)
... ............+ .++++.. ...+++. +. |...
T Consensus 72 ~~~------------------------~~~~~~~~~~~~~--~~~~a~~--~~~~a~~-----~~-----------~~~~ 107 (184)
T 3vtx_A 72 SAE------------------------AYYILGSANFMID--EKQAAID--ALQRAIA-----LN-----------TVYA 107 (184)
T ss_dssp CHH------------------------HHHHHHHHHHHTT--CHHHHHH--HHHHHHH-----HC-----------TTCH
T ss_pred hHH------------------------HHHHHHHHHHHcC--CHHHHHH--HHHHHHH-----hC-----------ccch
Confidence 211 1111222222222 1332322 2233332 11 3344
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+...+|.+|..+|+|++|+..|++++++. + . ...++++||.+|..+|+|++|...|++|
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--------p-~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIK--------P-G-----------FIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHhc--------c-h-----------hhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 677788999999999999999999999981 1 1 1246789999999999999999999999
Q ss_pred HHHH
Q 013867 301 LTKT 304 (435)
Q Consensus 301 L~I~ 304 (435)
|++.
T Consensus 168 l~~~ 171 (184)
T 3vtx_A 168 LEKE 171 (184)
T ss_dssp HHTT
T ss_pred HhCC
Confidence 9873
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-14 Score=137.81 Aligned_cols=209 Identities=14% Similarity=0.102 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~ 140 (435)
....+..+|..+. ..|++++|+..|++.+... .+|+-...+..+|.+|..+|+|++|++.|++. .
T Consensus 64 ~~~a~~~la~~~~----~~~~~~~A~~~l~~ll~~~------~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~-----~ 128 (291)
T 3mkr_A 64 ELQAVRMFAEYLA----SHSRRDAIVAELDREMSRS------VDVTNTTFLLMAASIYFYDQNPDAALRTLHQG-----D 128 (291)
T ss_dssp HHHHHHHHHHHHH----CSTTHHHHHHHHHHHHHSC------CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTC-----C
T ss_pred hHHHHHHHHHHHc----CCCcHHHHHHHHHHHHhcc------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCC-----C
Confidence 4455666666663 3567888888888877432 13555666788888888888888888877761 1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchh
Q 013867 141 ILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTG 220 (435)
Q Consensus 141 ~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~ 220 (435)
. ..++..++.++..+|..+. |...+ .+++. ..++ ....
T Consensus 129 ~----~~~~~~l~~~~~~~g~~~~----------------------A~~~l--~~~~~-----~~p~---------~~~~ 166 (291)
T 3mkr_A 129 S----LECMAMTVQILLKLDRLDL----------------------ARKEL--KKMQD-----QDED---------ATLT 166 (291)
T ss_dssp S----HHHHHHHHHHHHHTTCHHH----------------------HHHHH--HHHHH-----HCTT---------CHHH
T ss_pred C----HHHHHHHHHHHHHCCCHHH----------------------HHHHH--HHHHh-----hCcC---------cHHH
Confidence 1 1122223333333443332 22222 22221 1111 0011
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
..+..+..++..+|+|++|..+|+++++.. + . ....++++|.+|..+|+|++|+..|+++
T Consensus 167 ~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--------p-~-----------~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 167 QLATAWVSLAAGGEKLQDAYYIFQEMADKC--------S-P-----------TLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--------C-C-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHhC--------C-C-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223334445566799999999999999871 1 1 1246789999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchh
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 363 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a 363 (435)
|.+. |++| .+++|+|.++..+|+++++ ++.++++++++. |+||.+.
T Consensus 227 l~~~-----p~~~---~~l~~l~~~~~~~g~~~ea-----a~~~~~~~~~~~----P~~~~~~ 272 (291)
T 3mkr_A 227 LDKD-----SGHP---ETLINLVVLSQHLGKPPEV-----TNRYLSQLKDAH----RSHPFIK 272 (291)
T ss_dssp HHHC-----TTCH---HHHHHHHHHHHHTTCCHHH-----HHHHHHHHHHHC----TTCHHHH
T ss_pred HHhC-----CCCH---HHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHhC----CCChHHH
Confidence 9863 4444 4589999999999998653 378888888775 7777644
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-14 Score=134.87 Aligned_cols=210 Identities=10% Similarity=0.059 Sum_probs=151.8
Q ss_pred HHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH
Q 013867 64 QMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG 143 (435)
Q Consensus 64 ~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~ 143 (435)
.+.++|..+.+ .|+|++|+..|++++... ++....+.++.++|.+|..+|+|++|++.|++++++.+...
T Consensus 39 ~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~- 108 (272)
T 3u4t_A 39 IYNRRAVCYYE----LAKYDLAQKDIETYFSKV-----NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL- 108 (272)
T ss_dssp THHHHHHHHHH----TTCHHHHHHHHHHHHTTS-----CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-
T ss_pred HHHHHHHHHHH----HhhHHHHHHHHHHHHhcc-----CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH-
Confidence 45667777743 689999999999999722 23334588899999999999999999999999976543321
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHH
Q 013867 144 VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAA 223 (435)
Q Consensus 144 i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a 223 (435)
.++..++..+..+|.+ ++|.. ...+++.. .|....+.
T Consensus 109 ---~~~~~l~~~~~~~~~~----------------------~~A~~--~~~~al~~----------------~~~~~~~~ 145 (272)
T 3u4t_A 109 ---DMYGQIGSYFYNKGNF----------------------PLAIQ--YMEKQIRP----------------TTTDPKVF 145 (272)
T ss_dssp ---HHHHHHHHHHHHTTCH----------------------HHHHH--HHGGGCCS----------------SCCCHHHH
T ss_pred ---HHHHHHHHHHHHccCH----------------------HHHHH--HHHHHhhc----------------CCCcHHHH
Confidence 1233333334333333 22211 12221110 13445667
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN---FGDAEEILTRT 300 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~---y~eAe~l~~rA 300 (435)
.++|.....+++|++|+..|++++++. . . ...++.++|.++..+|+ +++|...|+++
T Consensus 146 ~~l~~~~~~~~~~~~A~~~~~~a~~~~---p------~-----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 146 YELGQAYYYNKEYVKADSSFVKVLELK---P------N-----------IYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS---T------T-----------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC---c------c-----------chHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 778844455669999999999999881 1 1 12456789999999999 99999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.+.++.-.++.+....++.+||.+|..+|++++| ...|++++++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~al~~~ 251 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA------DAAWKNILALD 251 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhcC
Confidence 99998766655455789999999999999998877 89999999986
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.62 E-value=9e-15 Score=140.47 Aligned_cols=138 Identities=11% Similarity=0.005 Sum_probs=111.0
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
++.++..+|+|++|+.+|++|+++. .. ...... ...+++++|.+|..+|+|++|+.+|++|+.+.+
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~---~~--~~~~~~---------~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~ 186 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQ---LT--GIDVYQ---------NLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTC---CC--SSCTTH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH---hc--CCchHH---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999883 21 111111 235789999999999999999999999999998
Q ss_pred HhhCCCChhHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHH-h
Q 013867 306 ELFGSHHPKVG-VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEA-L 383 (435)
Q Consensus 306 ~~lG~~HP~va-~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaea-l 383 (435)
+..+ .+... .+++|+|.+|..+|+|++| ...|++|+++.+. ..++...+..+.|++.++..+|+|++| .
T Consensus 187 ~~~~--~~~~~~~~~~nlg~~y~~~~~y~~A------l~~~~kal~~~~~-~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~ 257 (293)
T 2qfc_A 187 ALHD--NEEFDVKVRYNHAKALYLDSRYEES------LYQVNKAIEISCR-INSMALIGQLYYQRGECLRKLEYEEAEIE 257 (293)
T ss_dssp HSCC--CHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHH-TTBCSSHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hcCc--cccchHHHHHhHHHHHHHHhhHHHH------HHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 7653 34433 8999999999999998877 8999999999853 334455788889999999999999999 5
Q ss_pred hHh
Q 013867 384 SVQ 386 (435)
Q Consensus 384 ~~~ 386 (435)
..+
T Consensus 258 ~~~ 260 (293)
T 2qfc_A 258 DAY 260 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-13 Score=122.72 Aligned_cols=202 Identities=15% Similarity=0.101 Sum_probs=142.2
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCC
Q 013867 103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (435)
Q Consensus 103 ~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~ 182 (435)
+.|..+..+..+|.+|..+|+|++|++.|++++.+..... .++..++..+..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~--------------------- 57 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE----LAWLVRAEIYQYLKV--------------------- 57 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTC---------------------
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch----HHHHHHHHHHHHcCC---------------------
Confidence 4688899999999999999999999999999866543221 122222233333332
Q ss_pred chhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 183 NYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHAT-RNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 183 ~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~-G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
++++.. ...+++.. . |....+...+|.+|..+ |+|++|+.+|+++++. +..
T Consensus 58 -~~~A~~--~~~~a~~~-----~-----------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-------~~~-- 109 (225)
T 2vq2_A 58 -NDKAQE--SFRQALSI-----K-----------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD-------PTY-- 109 (225)
T ss_dssp -HHHHHH--HHHHHHHH-----C-----------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS-------TTC--
T ss_pred -hHHHHH--HHHHHHHh-----C-----------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC-------cCC--
Confidence 332222 23333321 1 22345667789999999 9999999999999861 111
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQ 341 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~A 341 (435)
|+ ....+.++|.+|..+|++++|+.+|++++.+ .|+...++.++|.+|..+|++++|
T Consensus 110 -------~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A------ 166 (225)
T 2vq2_A 110 -------PT--PYIANLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQFPPAFKELARTKMLAGQLGDA------ 166 (225)
T ss_dssp -------SC--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHH------
T ss_pred -------cc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHHHcCCHHHH------
Confidence 11 2246789999999999999999999999986 344456789999999999998776
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 342 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 342 e~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
...|++++++.. .+++ ..+..++.++...|+++++....
T Consensus 167 ~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 167 DYYFKKYQSRVE---VLQA---DDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp HHHHHHHHHHHC---SCCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCC---CCCH---HHHHHHHHHHHhcCcHHHHHHHH
Confidence 899999998762 0233 23456777778888888776654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-13 Score=126.65 Aligned_cols=224 Identities=13% Similarity=0.003 Sum_probs=136.2
Q ss_pred CChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013867 77 KSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156 (435)
Q Consensus 77 ~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~ 156 (435)
..+|+|++|+..|++++.... .+.|..+.++.++|.+|..+|+|++|+..|++++.+.... ..++..++..+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~ 87 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRA----LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYL 87 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhccc----ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHH
Confidence 467899999999999998632 3467899999999999999999999999999997764432 22344555555
Q ss_pred HhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhch
Q 013867 157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNF 236 (435)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y 236 (435)
..+|.+..|....+.++.+. |....+...+|.+|..+|+|
T Consensus 88 ~~~~~~~~A~~~~~~al~~~----------------------------------------~~~~~~~~~la~~~~~~g~~ 127 (275)
T 1xnf_A 88 TQAGNFDAAYEAFDSVLELD----------------------------------------PTYNYAHLNRGIALYYGGRD 127 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHC----------------------------------------TTCTHHHHHHHHHHHHTTCH
T ss_pred HHccCHHHHHHHHHHHHhcC----------------------------------------ccccHHHHHHHHHHHHhccH
Confidence 55665554444433333221 11123334444445555555
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHH------------------------------HHHHHHHHHHH
Q 013867 237 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA------------------------------ATFALGQLEAH 286 (435)
Q Consensus 237 ~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~------------------------------~l~nLa~ly~~ 286 (435)
++|..+|++++++. . + . .... ...+++.++..
T Consensus 128 ~~A~~~~~~a~~~~---~---~--~----------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 1xnf_A 128 KLAQDDLLAFYQDD---P---N--D----------PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG 189 (275)
T ss_dssp HHHHHHHHHHHHHC---T---T--C----------HHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC---C---C--C----------hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 55555555555440 0 0 0 0000 01234444455
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhh
Q 013867 287 MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKV 366 (435)
Q Consensus 287 qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l 366 (435)
++++++|...+++++..... ..|....++.++|.+|..+|++++| ...|++++++. |++..
T Consensus 190 ~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~----p~~~~----- 250 (275)
T 1xnf_A 190 NISEQTLMERLKADATDNTS----LAEHLSETNFYLGKYYLSLGDLDSA------TALFKLAVANN----VHNFV----- 250 (275)
T ss_dssp SSCHHHHHHHHHHHCCSHHH----HHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTTC----CTTCH-----
T ss_pred hcCHHHHHHHHHHHhccccc----ccccccHHHHHHHHHHHHcCCHHHH------HHHHHHHHhCC----chhHH-----
Confidence 55555555555555444332 2345578999999999999998776 88999998764 22221
Q ss_pred ccHHHHHHHhcCHHHHhhHh
Q 013867 367 DRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 367 ~nla~~~~a~G~yaeal~~~ 386 (435)
....++...|+|.+|+..+
T Consensus 251 -~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 -EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHhhHHHH
Confidence 2356677888999887664
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-14 Score=148.74 Aligned_cols=205 Identities=10% Similarity=0.055 Sum_probs=148.7
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcH-HHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 58 SNPVVLQMINYALSHARSQKSDESY-SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y-~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
.|..+..+..+|..+. ..|+| ++|+.+|++++++. |..+..+++||.+|..+|+|++|++.|++++.
T Consensus 98 ~~~~a~~~~~lg~~~~----~~g~~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 165 (474)
T 4abn_A 98 AQVEAQALMLKGKALN----VTPDYSPEAEVLLSKAVKLE--------PELVEAWNQLGEVYWKKGDVTSAHTCFSGALT 165 (474)
T ss_dssp CCCCHHHHHHHHHHHT----SSSSCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHH----hccccHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455667788888884 36899 99999999999775 55678899999999999999999999999987
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccc
Q 013867 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEE 216 (435)
Q Consensus 137 i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~ 216 (435)
+.... .++.+++.++..+....... ..+ .+++| +....+++.. .
T Consensus 166 ~~p~~-----~~~~~lg~~~~~~~~~~~~~-----------~~g--~~~~A--~~~~~~al~~----------------~ 209 (474)
T 4abn_A 166 HCKNK-----VSLQNLSMVLRQLQTDSGDE-----------HSR--HVMDS--VRQAKLAVQM----------------D 209 (474)
T ss_dssp TCCCH-----HHHHHHHHHHTTCCCSCHHH-----------HHH--HHHHH--HHHHHHHHHH----------------C
T ss_pred hCCCH-----HHHHHHHHHHHHhccCChhh-----------hhh--hHHHH--HHHHHHHHHh----------------C
Confidence 65431 23444555554431110000 001 13333 2233333331 1
Q ss_pred cchhHHHHHHHHHHHHh--------hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC
Q 013867 217 GCTGSAALSYGEYLHAT--------RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG 288 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~--------G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG 288 (435)
|....+..++|.+|..+ |+|++|+..|++|+++. . . . ++ ....+++||.+|..+|
T Consensus 210 p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p------~-~-----~~--~~~~~~~lg~~~~~~g 272 (474)
T 4abn_A 210 VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD---R------K-A-----SS--NPDLHLNRATLHKYEE 272 (474)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC---G------G-G-----GG--CHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC---C------C-c-----cc--CHHHHHHHHHHHHHcC
Confidence 34456778899999998 99999999999999981 1 0 0 01 1246789999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 289 NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 289 ~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
+|++|+..|++|+.+ .|+...++.+++.++...|++++|
T Consensus 273 ~~~~A~~~~~~al~l--------~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 273 SYGEALEGFSQAAAL--------DPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp CHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 455667899999999999998877
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-14 Score=145.26 Aligned_cols=203 Identities=8% Similarity=0.006 Sum_probs=150.7
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCC
Q 013867 103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (435)
Q Consensus 103 ~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~ 182 (435)
-.|.-+..++++|.+|..+|+|++|+..|++++.+..... .++.+++.++..+|.
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~----~a~~~~g~~l~~~g~--------------------- 146 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY----TVWHFRRVLLKSLQK--------------------- 146 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTC---------------------
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH----HHHHHHHHHHHHccc---------------------
Confidence 3578899999999999999999999999999976654331 123333333333332
Q ss_pred chhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCc
Q 013867 183 NYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL 262 (435)
Q Consensus 183 ~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l 262 (435)
.++ +++....++|.. +|....+..++|.+|..+|+|++|+.+|++||++ .
T Consensus 147 d~~--eAl~~~~~al~l----------------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l-----------d- 196 (382)
T 2h6f_A 147 DLH--EEMNYITAIIEE----------------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ-----------D- 196 (382)
T ss_dssp CHH--HHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-----------C-
T ss_pred CHH--HHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------C-
Confidence 133 333344444442 1445677888999999999999999999999998 1
Q ss_pred ccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHH-hhhhhhhhhhHHH
Q 013867 263 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN-KAMQEHSSALLIQ 341 (435)
Q Consensus 263 ~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~-qG~~e~A~~~~~A 341 (435)
|+ ...+++++|.+|..+|+|++|...|+++|.+ +|+-..+++++|.+|.. +|.+++|. +..+
T Consensus 197 ------P~--~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~-~~~e 259 (382)
T 2h6f_A 197 ------AK--NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--------DVRNNSVWNQRYFVISNTTGYNDRAV-LERE 259 (382)
T ss_dssp ------TT--CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCSCSHHH-HHHH
T ss_pred ------cc--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCcchHHH-HHHH
Confidence 11 1246789999999999999999999999997 67778899999999999 55547762 3344
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhc--CHHHHhh
Q 013867 342 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG--GYAEALS 384 (435)
Q Consensus 342 e~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G--~yaeal~ 384 (435)
...|++||++- |+.....+|++.++..+| +|.+|+.
T Consensus 260 l~~~~~Al~l~-------P~~~~a~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 260 VQYTLEMIKLV-------PHNESAWNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp HHHHHHHHHHS-------TTCHHHHHHHHHHHTTTCGGGCHHHHH
T ss_pred HHHHHHHHHHC-------CCCHHHHHHHHHHHHccCccchHHHHH
Confidence 68899999875 343457778888888888 5777764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=6.6e-14 Score=128.68 Aligned_cols=200 Identities=15% Similarity=0.015 Sum_probs=141.5
Q ss_pred cchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCC
Q 013867 104 ESWR-GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (435)
Q Consensus 104 Hp~~-A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~ 182 (435)
+|.. +..+..+|.+|..+|+|++|++.|++++.+.... ..++..++..+...|.
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~--------------------- 86 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS----ADAHAALAVVFQTEME--------------------- 86 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC---------------------
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHcCC---------------------
Confidence 3444 8999999999999999999999999986653221 1112222222322222
Q ss_pred chhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCc
Q 013867 183 NYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL 262 (435)
Q Consensus 183 ~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l 262 (435)
+++|.. ...+++.. . |....+...++.+|..+|+|++|+.+|++++.. + ..
T Consensus 87 -~~~A~~--~~~~a~~~-----~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~--~~--- 137 (252)
T 2ho1_A 87 -PKLADE--EYRKALAS-----D-----------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD-----T--LY--- 137 (252)
T ss_dssp -HHHHHH--HHHHHHHH-----C-----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC-----T--TC---
T ss_pred -HHHHHH--HHHHHHHH-----C-----------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC-----c--cC---
Confidence 333322 23333321 1 223456677899999999999999999999861 0 01
Q ss_pred ccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 013867 263 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQE 342 (435)
Q Consensus 263 ~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae 342 (435)
|+ ....+.++|.+|..+|++++|+.+|++++.+ .|....++.++|.+|..+|++++| .
T Consensus 138 ------~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A------~ 195 (252)
T 2ho1_A 138 ------PE--RSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--------NRNQPSVALEMADLLYKEREYVPA------R 195 (252)
T ss_dssp ------TT--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHH------H
T ss_pred ------cc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHH------H
Confidence 11 2246789999999999999999999999986 244467789999999999998776 8
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 343 GLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 343 ~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
..|++++++. + +....+..++.++..+|++++|....
T Consensus 196 ~~~~~~~~~~----~---~~~~~~~~~~~~~~~~g~~~~A~~~~ 232 (252)
T 2ho1_A 196 QYYDLFAQGG----G---QNARSLLLGIRLAKVFEDRDTAASYG 232 (252)
T ss_dssp HHHHHHHTTS----C---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhC----c---CcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 8899987743 2 22335667888899999999887765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-14 Score=130.55 Aligned_cols=198 Identities=13% Similarity=0.061 Sum_probs=124.6
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch
Q 013867 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (435)
Q Consensus 105 p~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~ 184 (435)
...+..++++|..+..+|+|++|+..|++++....... .++..+ +.++...+. +
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~l--------------------a~~~~~~~~--~ 73 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA----IPYINF--------------------ANLLSSVNE--L 73 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCH----HHHHHH--------------------HHHHHHTTC--H
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH----HHHHHH--------------------HHHHHHcCC--H
Confidence 46788899999999999999999999999866433221 112222 222222221 3
Q ss_pred hchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 013867 185 KTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS 264 (435)
Q Consensus 185 ~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~ 264 (435)
+++.. ...+++.. . |....+...+|.+|..+|+|++|+.+|++++++. .. .
T Consensus 74 ~~A~~--~~~~~~~~-----~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~-----~--- 124 (243)
T 2q7f_A 74 ERALA--FYDKALEL-----D-----------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG---ME-----N--- 124 (243)
T ss_dssp HHHHH--HHHHHHHH-----C-----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---CC-----S---
T ss_pred HHHHH--HHHHHHHc-----C-----------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CC-----C---
Confidence 33322 23333321 1 2234567778999999999999999999999881 10 0
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 013867 265 CNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGL 344 (435)
Q Consensus 265 ~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~L 344 (435)
...+.++|.+|..+|+|++|+.+|++++.+ +|+...++.++|.+|..+|++++| +..
T Consensus 125 ---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A------~~~ 181 (243)
T 2q7f_A 125 ---------GDLFYMLGTVLVKLEQPKLALPYLQRAVEL--------NENDTEARFQFGMCLANEGMLDEA------LSQ 181 (243)
T ss_dssp ---------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHH------HHH
T ss_pred ---------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHcCCHHHH------HHH
Confidence 135679999999999999999999999986 445566899999999999998776 899
Q ss_pred HHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 345 YRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 345 y~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
|++++++. |+....+.+++.++..+|++++|+..+.
T Consensus 182 ~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 182 FAAVTEQD-------PGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp HHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHhC-------cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99998874 2334467789999999999998887663
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-14 Score=127.15 Aligned_cols=147 Identities=12% Similarity=0.064 Sum_probs=120.8
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
...+...+|.+|..+|+|++|+.+|++++++.++.. + . + ....+++++|.+|..+|+|++|+++|+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~--~-------~--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 90 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG---D--H-------T--AEHRALHQVGMVERMAGNWDAARRCFL 90 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---C--H-------H--HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC---C--c-------H--HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345677789999999999999999999999964311 0 0 1 134578899999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcC
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG 378 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ 378 (435)
+++.+.+ ..|.+++..+.+++++|.+|..+|++++| +..+++++++.+..+ +....+..+.+++.++..+|+
T Consensus 91 ~al~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 91 EERELLA-SLPEDPLAASANAYEVATVALHFGDLAGA------RQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-HcCccHHHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHCcC
Confidence 9999998 56666668999999999999999998776 899999999986432 222356678899999999999
Q ss_pred HHHHhhHhh
Q 013867 379 YAEALSVQQ 387 (435)
Q Consensus 379 yaeal~~~~ 387 (435)
|++|.....
T Consensus 163 ~~~A~~~~~ 171 (203)
T 3gw4_A 163 LLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998877663
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.60 E-value=6.1e-14 Score=134.64 Aligned_cols=141 Identities=12% Similarity=-0.005 Sum_probs=115.1
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
++.++..+|+|++|+.+|++|+.+. .. ..... ..+.++++||.+|..+|+|++|+.+|++||.+.+
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~---~~--~~~~~---------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 186 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQ---LT--GIDVY---------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTC---CC--CSCTT---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHh---cc--cccHH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4556778899999999999999972 21 11111 1345789999999999999999999999999987
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcC-HHHHhh
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG-YAEALS 384 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~-yaeal~ 384 (435)
+. +.++|..+.+++|+|.+|..+|+|++| ...|++|+++.+.. .+++..+..+.|++.++..+|+ |++|+.
T Consensus 187 ~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A------~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 187 AL-HDNEEFDVKVRYNHAKALYLDSRYEES------LYQVNKAIEISCRI-NSMALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HS-SCCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHT-TBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hc-ccchhHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 75 448899999999999999999998877 89999999999643 3445678889999999999994 788877
Q ss_pred Hhhh
Q 013867 385 VQQN 388 (435)
Q Consensus 385 ~~~~ 388 (435)
.+.+
T Consensus 259 ~~~~ 262 (293)
T 3u3w_A 259 AYKK 262 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-13 Score=125.34 Aligned_cols=159 Identities=19% Similarity=0.126 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhch
Q 013867 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKN-SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY 187 (435)
Q Consensus 109 ~~l~nLa~ly~~qGky~eA~~l~~ral~i~e-~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ea 187 (435)
..+.++|..|..+|+|++|++.|++++.+.+ ... .++.+ ....+...+. |++|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~--------------------~~~~~~~~~~--~~~A 61 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYN--------------------CGVCADNIKK--YKEA 61 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHH--------------------HHHHHHHTTC--HHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHH--------------------HHHHHHHhhc--HHHH
Confidence 7899999999999999999999999976543 111 11111 2222222221 4333
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccc
Q 013867 188 GAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 267 (435)
Q Consensus 188 eal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~ 267 (435)
+....+++. + .|....+...+|.+|..+|+|++|+..|++++++. . .++.+
T Consensus 62 --~~~~~~al~-----~-----------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p---~~~~~----- 112 (228)
T 4i17_A 62 --ADYFDIAIK-----K-----------NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV---P---GNATI----- 112 (228)
T ss_dssp --HHHHHHHHH-----T-----------TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---T---TCHHH-----
T ss_pred --HHHHHHHHH-----h-----------CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---C---CcHHH-----
Confidence 323333332 1 14455677889999999999999999999999981 1 11000
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh--HHHHHHHHHHHHHHhhhh
Q 013867 268 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK--VGVVLTCLALMFRNKAMQ 332 (435)
Q Consensus 268 ~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~--va~~L~nLA~ly~~qG~~ 332 (435)
.......+.++|.+|..+|+|++|+..|++|+.+ +|+ ...++.+||.+|..+|+.
T Consensus 113 --~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 113 --EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--------TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--------CCCcccHHHHHHHHHHHHHHHHH
Confidence 0011245789999999999999999999999986 788 899999999999999997
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.59 E-value=7e-14 Score=135.86 Aligned_cols=239 Identities=14% Similarity=0.057 Sum_probs=153.5
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWR-GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~-A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
.|+|++|+...++... ..|.. .....-++..|..+|+|++|+..++.. . ...+.++..++-.+.
T Consensus 12 ~g~y~~ai~~~~~~~~--------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~----~~~~~a~~~la~~~~ 76 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKP--------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---S----APELQAVRMFAEYLA 76 (291)
T ss_dssp TTCHHHHHHHHHHSCC--------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---S----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---C----ChhHHHHHHHHHHHc
Confidence 6899999999987542 23444 345566889999999999999877542 1 112334444444454
Q ss_pred hcCCCcchHHHHHHHHHHHHhc-CCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc-ccchhHHHHHHHHHHHHhhc
Q 013867 158 QLGQDDTSSVVADKCLQLCEKH-KPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE-EGCTGSAALSYGEYLHATRN 235 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~-~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~-~~~~~~~a~~la~~~~~~G~ 235 (435)
..+..+.|....+. ++... .+. ....+...+ .+..-.|+++.|.... .+....+...++.+|..+|+
T Consensus 77 ~~~~~~~A~~~l~~---ll~~~~~P~---~~~~~~~la-----~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~ 145 (291)
T 3mkr_A 77 SHSRRDAIVAELDR---EMSRSVDVT---NTTFLLMAA-----SIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDR 145 (291)
T ss_dssp CSTTHHHHHHHHHH---HHHSCCCCS---CHHHHHHHH-----HHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHHHH---HHhcccCCC---CHHHHHHHH-----HHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 44544444332222 22221 121 112222111 1222345555544222 23455677778899999999
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH
Q 013867 236 FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 315 (435)
Q Consensus 236 y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v 315 (435)
+++|+..|++++++. |+++.......+..++..+|+|++|..+|++++.. +|+.
T Consensus 146 ~~~A~~~l~~~~~~~------------------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------~p~~ 199 (291)
T 3mkr_A 146 LDLARKELKKMQDQD------------------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------CSPT 199 (291)
T ss_dssp HHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------SCCC
T ss_pred HHHHHHHHHHHHhhC------------------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------CCCc
Confidence 999999999999881 11111111122334555679999999999999975 5666
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHH
Q 013867 316 GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEA 382 (435)
Q Consensus 316 a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaea 382 (435)
...++++|.+|..+|++++| +..|+++|++. |++|+ .+.|++.++..+|++.++
T Consensus 200 ~~~~~~la~~~~~~g~~~eA------~~~l~~al~~~----p~~~~---~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAA------EGVLQEALDKD----SGHPE---TLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTCHH---HHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC----CCCHH---HHHHHHHHHHHcCCCHHH
Confidence 77899999999999998776 89999999875 34444 678899999999998764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-14 Score=119.04 Aligned_cols=146 Identities=17% Similarity=0.083 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 220 ~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~r 299 (435)
..+...+|.+|..+|+|++|+.+|++++++..+... + .....+++++|.+|..+|+|++|..+|++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 74 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-------------K-AAERIAYSNLGNAYIFLGEFETASEYYKK 74 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-------------c-hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456677889999999999999999999999653211 1 11335778999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCH
Q 013867 300 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGY 379 (435)
Q Consensus 300 AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~y 379 (435)
++.+.++. .+++..+.++.++|.+|..+|++++| +..+++++++.+..+ +++..+..+.+++.++..+|+|
T Consensus 75 a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~ 145 (164)
T 3ro3_A 75 TLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKA------IDYHLKHLAIAQELK-DRIGEGRACWSLGNAYTALGNH 145 (164)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHh--CCcHHHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHcc-chHhHHHHHHHHHHHHHHccCH
Confidence 99999876 56677899999999999999998876 899999999986533 3455677888999999999999
Q ss_pred HHHhhHhhh
Q 013867 380 AEALSVQQN 388 (435)
Q Consensus 380 aeal~~~~~ 388 (435)
++|+.....
T Consensus 146 ~~A~~~~~~ 154 (164)
T 3ro3_A 146 DQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998877643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-13 Score=115.61 Aligned_cols=170 Identities=21% Similarity=0.256 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
+..+..+..+|..+.. .|+|++|+.+|++++... |....++..+|.+|..+|++++|++.+++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 71 (186)
T 3as5_A 5 DIRQVYYRDKGISHAK----AGRYSQAVMLLEQVYDAD--------AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD- 71 (186)
T ss_dssp CHHHHHHHHHHHHHHH----HTCHHHHHHHHTTTCCTT--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred chhhHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhC--------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 4456666777777742 578888888888877542 334677888888888888888888877776321
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccc
Q 013867 139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGC 218 (435)
Q Consensus 139 e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~ 218 (435)
.+.
T Consensus 72 ---------------------~~~-------------------------------------------------------- 74 (186)
T 3as5_A 72 ---------------------APD-------------------------------------------------------- 74 (186)
T ss_dssp ---------------------CTT--------------------------------------------------------
T ss_pred ---------------------CCC--------------------------------------------------------
Confidence 111
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
...+...+|.++..+|+|++|+.+|++++.+. . . ....+.++|.+|..+|+|++|..+|+
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~------~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN---P------I-----------NFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---T------T-----------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---c------H-----------hHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 01223345667788999999999999999881 1 1 01356789999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+++.+. |+...++.++|.+|..+|++++| ...|++++++.
T Consensus 135 ~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~ 174 (186)
T 3as5_A 135 IALGLR--------PNEGKVHRAIAFSYEQMGRHEEA------LPHFKKANELD 174 (186)
T ss_dssp HHHHHC--------TTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred HHHhcC--------ccchHHHHHHHHHHHHcCCHHHH------HHHHHHHHHcC
Confidence 999863 44567889999999999998776 89999999987
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-13 Score=135.57 Aligned_cols=221 Identities=14% Similarity=0.095 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh-------------HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Q 013867 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSI-------------LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLC 176 (435)
Q Consensus 110 ~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~-------------L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~ 176 (435)
+...-|.-+.++|+|++|++.|+++++..+.. +.....++.+++.+|..+|.++.|..+...+..+.
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34566788899999999999999998755432 11122234455555555555444333332222222
Q ss_pred HhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhccc
Q 013867 177 EKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDF 256 (435)
Q Consensus 177 ~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~ 256 (435)
.. .+++ .....+...++.++..+|++++|+.+|++++.+..+...
T Consensus 86 ~~-----------------------------~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 130 (434)
T 4b4t_Q 86 MQ-----------------------------FAKS-----KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR- 130 (434)
T ss_dssp HT-----------------------------SCHH-----HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC-
T ss_pred HH-----------------------------ccch-----HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc-
Confidence 11 0000 011123344566778899999999999999999654322
Q ss_pred CCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhh
Q 013867 257 SDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSS 336 (435)
Q Consensus 257 ~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~ 336 (435)
... ......+||.+|..+|+|++|.+++++++.+..+. .++|..+.++.+++.+|..+|+|++|
T Consensus 131 ----~~~---------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A- 194 (434)
T 4b4t_Q 131 ----VFL---------KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKS- 194 (434)
T ss_dssp ----CSS---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHH-
T ss_pred ----cHH---------HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHH-
Confidence 211 23567899999999999999999999999876653 57899999999999999999998877
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 337 ALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 337 ~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
..+|++++.+....+..+...+....+++.++...|+|.+|...+
T Consensus 195 -----~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 195 -----KASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp -----HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred -----HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 899999999986543333336777788999999999999997755
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.2e-14 Score=152.62 Aligned_cols=206 Identities=15% Similarity=0.015 Sum_probs=139.2
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
..|+|++|+..|++++.......+..+|..+..+.++|.+|..+|+|++|+..|++++++..... .++.+++.
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~--- 475 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW----RLVWYRAV--- 475 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH----HHHHHHHH---
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH----HHHHHHHH---
Confidence 56899999999999996554455566788889999999999999999999999999865432221 11222222
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFL 237 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~ 237 (435)
++...+. |++|.. .+.+++.. . |....+..++|.+|..+|+|+
T Consensus 476 -----------------~~~~~g~--~~~A~~--~~~~al~l-----~-----------P~~~~~~~~lg~~~~~~g~~~ 518 (681)
T 2pzi_A 476 -----------------AELLTGD--YDSATK--HFTEVLDT-----F-----------PGELAPKLALAATAELAGNTD 518 (681)
T ss_dssp -----------------HHHHHTC--HHHHHH--HHHHHHHH-----S-----------TTCSHHHHHHHHHHHHHTCCC
T ss_pred -----------------HHHHcCC--HHHHHH--HHHHHHHh-----C-----------CCChHHHHHHHHHHHHcCChH
Confidence 2222221 443333 33444432 1 334467788899999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 013867 238 LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV 317 (435)
Q Consensus 238 eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~ 317 (435)
+ +..|++|+++ . |+ ...+++|||.+|..+|+|++|...|++|+++ .|+...
T Consensus 519 ~-~~~~~~al~~-----------~-------P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~ 569 (681)
T 2pzi_A 519 E-HKFYQTVWST-----------N-------DG--VISAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTT 569 (681)
T ss_dssp T-TCHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHH
T ss_pred H-HHHHHHHHHh-----------C-------Cc--hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHH
Confidence 9 9999999988 1 11 1246789999999999999999999988864 577788
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCc
Q 013867 318 VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEG 361 (435)
Q Consensus 318 ~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~ 361 (435)
++.|+|.+|...|+.+++ ++.-+++|++.++...++.|.
T Consensus 570 a~~~~~~~~~~~~~~~~~-----~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 570 ARLTSAVTLLSGRSTSEV-----TEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHHHHHHTC-------C-----CHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHHHHHHHHccCCCCCC-----CHHHHHHHHHHHhhCCCCcHH
Confidence 889999998877765544 267788898888766666665
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=9.8e-13 Score=123.56 Aligned_cols=198 Identities=16% Similarity=0.205 Sum_probs=142.7
Q ss_pred HHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhh
Q 013867 63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE----SGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 63 ~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~----qGky~eA~~l~~ral~i~ 138 (435)
..+.++|..+.......|+|++|+.+|++++... -..++++||.+|.. +|++++|++.|+++++..
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 108 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK 108 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC
Confidence 4567788887542223679999999999999762 35788999999999 999999999999986542
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccc
Q 013867 139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGC 218 (435)
Q Consensus 139 e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~ 218 (435)
...++.+++.+|.. |. ....++++| +..+.+++. . +
T Consensus 109 ------~~~a~~~lg~~~~~-~~-----------------~~~~~~~~A--~~~~~~a~~-----~-~------------ 144 (273)
T 1ouv_A 109 ------YAEGCASLGGIYHD-GK-----------------VVTRDFKKA--VEYFTKACD-----L-N------------ 144 (273)
T ss_dssp ------CHHHHHHHHHHHHH-CS-----------------SSCCCHHHH--HHHHHHHHH-----T-T------------
T ss_pred ------CccHHHHHHHHHHc-CC-----------------CcccCHHHH--HHHHHHHHh-----c-C------------
Confidence 11223333333322 00 001123333 333344433 1 1
Q ss_pred hhHHHHHHHHHHHH----hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH----cCCH
Q 013867 219 TGSAALSYGEYLHA----TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH----MGNF 290 (435)
Q Consensus 219 ~~~~a~~la~~~~~----~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~----qG~y 290 (435)
...+..++|.+|.. +|++++|+.+|++|++. + + ..++.+||.+|.. +|++
T Consensus 145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~---~--------------~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----K---D--------------SPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T---C--------------HHHHHHHHHHHHHTCSSCCCH
T ss_pred cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----C---C--------------HHHHHHHHHHHHcCCCCCccH
Confidence 12456778888888 99999999999999866 1 0 1357899999999 9999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHH----hhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~----qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++|..+|++++++ | + ..++.+||.+|.. ++++++| ...|++|+++-
T Consensus 203 ~~A~~~~~~a~~~-----~--~---~~a~~~l~~~~~~g~~~~~~~~~A------~~~~~~a~~~~ 252 (273)
T 1ouv_A 203 KEALARYSKACEL-----E--N---GGGCFNLGAMQYNGEGVTRNEKQA------IENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHT-----T--C---HHHHHHHHHHHHTTSSSSCCSTTH------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-----C--C---HHHHHHHHHHHHcCCCcccCHHHH------HHHHHHHHHcC
Confidence 9999999999986 2 2 5689999999999 9998776 89999999875
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-12 Score=120.85 Aligned_cols=189 Identities=12% Similarity=0.049 Sum_probs=145.6
Q ss_pred CCCChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH--------cCCHHH
Q 013867 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE--------SGNYVE 126 (435)
Q Consensus 55 g~~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~--------qGky~e 126 (435)
.|++|.....+..+|.++.+ +|+|++|+..|++++.+. |++|.....+.++|.+|.. +|+|++
T Consensus 45 ~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 115 (261)
T 3qky_A 45 GRTHEWAADAQFYLARAYYQ----NKEYLLAASEYERFIQIY-----QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRK 115 (261)
T ss_dssp CSCSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHC-----CCCchhHHHHHHHHHHHHHhcccccccchhHHH
Confidence 67788778889999999853 689999999999999876 6678899999999999999 999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcC
Q 013867 127 AIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHG 206 (435)
Q Consensus 127 A~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg 206 (435)
|+..|++++... |+..-. ..... +...+.
T Consensus 116 A~~~~~~~l~~~----------------------p~~~~~---~~a~~------------------~~~~~~-------- 144 (261)
T 3qky_A 116 AIEAFQLFIDRY----------------------PNHELV---DDATQ------------------KIRELR-------- 144 (261)
T ss_dssp HHHHHHHHHHHC----------------------TTCTTH---HHHHH------------------HHHHHH--------
T ss_pred HHHHHHHHHHHC----------------------cCchhH---HHHHH------------------HHHHHH--------
Confidence 999999985432 221100 00000 000000
Q ss_pred CCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH
Q 013867 207 NLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH 286 (435)
Q Consensus 207 ~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~ 286 (435)
+........+|.+|..+|+|++|+..|+++++.. ++++. ...++.+||.+|..
T Consensus 145 ----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~-----------~~~a~~~l~~~~~~ 197 (261)
T 3qky_A 145 ----------AKLARKQYEAARLYERRELYEAAAVTYEAVFDAY------PDTPW-----------ADDALVGAMRAYIA 197 (261)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTSTT-----------HHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC------CCCch-----------HHHHHHHHHHHHHH
Confidence 0011234567889999999999999999999882 11110 22468899999997
Q ss_pred c----------CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 287 M----------GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 287 q----------G~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
+ |+|++|...|++++... |+||.+..+...|+.++..+++++++
T Consensus 198 ~g~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 198 YAEQSVRARQPERYRRAVELYERLLQIF-----PDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHTSCGGGHHHHHHHHHHHHHHHHHHC-----TTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hcccchhhcccchHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 7 99999999999999865 89999999999999999999998776
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-12 Score=112.16 Aligned_cols=165 Identities=15% Similarity=0.088 Sum_probs=129.2
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCc
Q 013867 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (435)
Q Consensus 104 Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~ 183 (435)
.+..+..+.++|..|..+|+|++|+..|++++.. .+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------------~~~--------------------- 40 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA----------------------DAF--------------------- 40 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT----------------------TSC---------------------
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------------Ccc---------------------
Confidence 4567888999999999999999999888775211 111
Q ss_pred hhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 013867 184 YKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLG 263 (435)
Q Consensus 184 ~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~ 263 (435)
...+...+|.++..+|+|++|..+|++++++. . .
T Consensus 41 -----------------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~------~-- 74 (186)
T 3as5_A 41 -----------------------------------DVDVALHLGIAYVKTGAVDRGTELLERSLADA---P------D-- 74 (186)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------T--
T ss_pred -----------------------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---C------C--
Confidence 01123345667788999999999999999881 1 1
Q ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 013867 264 SCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEG 343 (435)
Q Consensus 264 ~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~ 343 (435)
....+.++|.+|..+|+|++|..+|++++.+ +|+....+.++|.+|..+|++++| ..
T Consensus 75 ---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A------~~ 131 (186)
T 3as5_A 75 ---------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEA------ID 131 (186)
T ss_dssp ---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HH
T ss_pred ---------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHH------HH
Confidence 1135689999999999999999999999987 455567889999999999998776 89
Q ss_pred HHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 344 LYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 344 Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
.|++++++. |+......+++.++..+|+|++|+....
T Consensus 132 ~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 132 SFKIALGLR-------PNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcC-------ccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999875 2334567789999999999998877663
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=119.63 Aligned_cols=115 Identities=19% Similarity=0.194 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
...+|.+|..+|+|++|+.+|++++++ . |+ ...++.+||.+|..+|+|++|+..|++|++
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~---~---------------p~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINV---Q---------------ER--DPKAHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---C---------------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---C---------------CC--CHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 345788899999999999999999998 1 11 124678999999999999999999999998
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhc
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG 377 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G 377 (435)
+ .|+-..++.+||.+|..+|++++| |+.++++|+++. |++|.+ ...++.++..+|
T Consensus 94 ~--------~p~~~~~~~~la~~~~~~~~~~~a-----a~~~~~~al~l~----P~~~~~---~~l~~~ll~~~G 148 (150)
T 4ga2_A 94 L--------NPTQKDLVLKIAELLCKNDVTDGR-----AKYWVERAAKLF----PGSPAV---YKLKEQLLDCEG 148 (150)
T ss_dssp H--------CTTCHHHHHHHHHHHHHHCSSSSH-----HHHHHHHHHHHS----TTCHHH---HHHHHHHHHTCC
T ss_pred h--------CCCCHHHHHHHHHHHHHcCChHHH-----HHHHHHHHHHhC----cCCHHH---HHHHHHHHHHhC
Confidence 7 455566899999999999998775 355679999885 566653 334455555555
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-12 Score=116.22 Aligned_cols=187 Identities=13% Similarity=0.106 Sum_probs=126.6
Q ss_pred HHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhH
Q 013867 63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL 142 (435)
Q Consensus 63 ~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L 142 (435)
..+.+.|..+.. .|+|++|+..|++++.+... . -...+.++|.+|..+|+|++|+..|++++.+.+...
T Consensus 8 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~----~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 8 NQLKNEGNDALN----AKNYAVAFEKYSEYLKLTNN----Q---DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTT----C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH
T ss_pred HHHHHHHHHHHH----ccCHHHHHHHHHHHHhccCC----C---CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH
Confidence 677888888853 68999999999999987641 1 125677799999999999999999999987654432
Q ss_pred HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHH
Q 013867 143 GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSA 222 (435)
Q Consensus 143 ~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~ 222 (435)
.++..++.++..+|.+..|....+.++.+ .++.+. ....+..+
T Consensus 77 ----~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----------------------------~p~~~~----~~~~~~~~ 119 (228)
T 4i17_A 77 ----NAYIGKSAAYRDMKNNQEYIATLTEGIKA-----------------------------VPGNAT----IEKLYAIY 119 (228)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------STTCHH----HHHHHHHH
T ss_pred ----HHHHHHHHHHHHcccHHHHHHHHHHHHHH-----------------------------CCCcHH----HHHHHHHH
Confidence 23444555555555554443333322221 111100 00112245
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCH------------
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF------------ 290 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y------------ 290 (435)
..++|.++..+|+|++|+..|++++++ . |+.....++.+||.+|..+|+.
T Consensus 120 ~~~~g~~~~~~~~~~~A~~~~~~al~~-----~-------------p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~ 181 (228)
T 4i17_A 120 YLKEGQKFQQAGNIEKAEENYKHATDV-----T-------------SKKWKTDALYSLGVLFYNNGADVLRKATPLASSN 181 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTS-----S-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHhc-----C-------------CCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 667888999999999999999999977 1 2211124678999999999998
Q ss_pred ---------------HHHHHHHHHHHHHHHHhhCCCChhHHHHHH
Q 013867 291 ---------------GDAEEILTRTLTKTEELFGSHHPKVGVVLT 320 (435)
Q Consensus 291 ---------------~eAe~l~~rAL~I~e~~lG~~HP~va~~L~ 320 (435)
++|.++|++|+++ .|++|++...+.
T Consensus 182 ~~~~~~~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~~~~l~ 221 (228)
T 4i17_A 182 KEKYASEKAKADAAFKKAVDYLGEAVTL-----SPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCHHHHHHHH
Confidence 6677777777665 577776655443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=114.56 Aligned_cols=140 Identities=13% Similarity=0.092 Sum_probs=110.8
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
++|++++|+..|++++ +..|.-...+.+||.+|..+|+|++|++.|++++.+
T Consensus 9 ~~~~~e~ai~~~~~a~--------~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-------------------- 60 (150)
T 4ga2_A 9 SKADVERYIASVQGST--------PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-------------------- 60 (150)
T ss_dssp CHHHHHHHHHHHHHHS--------CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred HcChHHHHHHHHHHhc--------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------
Confidence 6899999999999998 445778888899999999999999999999987432
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFL 237 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~ 237 (435)
.|. ...+..++|.+|..+|+|+
T Consensus 61 --~p~--------------------------------------------------------~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 61 --QER--------------------------------------------------------DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CTT--------------------------------------------------------CHHHHHHHHHHHHHTTCHH
T ss_pred --CCC--------------------------------------------------------CHHHHHHHHHHHHHcCchH
Confidence 222 1123345677889999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHHhhCCCChhHH
Q 013867 238 LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI-LTRTLTKTEELFGSHHPKVG 316 (435)
Q Consensus 238 eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l-~~rAL~I~e~~lG~~HP~va 316 (435)
+|+..|++++++ . |+ ...++.+||.+|..+|++++|... +++|+.+ -|+||.+
T Consensus 83 ~A~~~~~~al~~-----------~-------p~--~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-----~P~~~~~- 136 (150)
T 4ga2_A 83 KAVECYRRSVEL-----------N-------PT--QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-----FPGSPAV- 136 (150)
T ss_dssp HHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-----STTCHHH-
T ss_pred HHHHHHHHHHHh-----------C-------CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----CcCCHHH-
Confidence 999999999998 1 11 124678999999999999986654 6999986 4677754
Q ss_pred HHHHHHHHHHHHhhh
Q 013867 317 VVLTCLALMFRNKAM 331 (435)
Q Consensus 317 ~~L~nLA~ly~~qG~ 331 (435)
++.++.++..+|+
T Consensus 137 --~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 137 --YKLKEQLLDCEGE 149 (150)
T ss_dssp --HHHHHHHHHTCCC
T ss_pred --HHHHHHHHHHhCc
Confidence 6778888888875
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.5e-11 Score=121.62 Aligned_cols=282 Identities=10% Similarity=0.045 Sum_probs=155.7
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE----SGNYVEAIEKLQKVENF 137 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~----qGky~eA~~l~~ral~i 137 (435)
+..+.++|..+.......+++++|+.+|+++.... -...+++||.+|.. .+++++|+..|+++.+.
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 144 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ 144 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 44566777777432222567888888888887531 23566778888888 78888888888887543
Q ss_pred hhhhHHHHHHHHHHHHHHHHh----cCCCcchHHHHHHHH------------HHHHhcC--CCchhchhhHHHHHHHHH-
Q 013867 138 KNSILGVRVAAMEALAGLYLQ----LGQDDTSSVVADKCL------------QLCEKHK--PENYKTYGAVNSRANAVK- 198 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~----~g~~~~A~~~~~~~~------------~l~~~~~--~~~~~eaeal~~~a~Ai~- 198 (435)
.. ..++.+|+.+|.. .+.+..|..+..+.+ .++.... ..+++++..+ +.+++.
T Consensus 145 ~~------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~--~~~a~~~ 216 (490)
T 2xm6_A 145 GR------DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW--YRKSATS 216 (490)
T ss_dssp TC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH--HHHHHHT
T ss_pred CC------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH--HHHHHHC
Confidence 21 2233344444443 333344444433322 1222100 1123322222 222221
Q ss_pred ---------HHHHHh----cCCCccccccc----ccchhHHHHHHHHHHHH----hhchHHHHHHHHHHHHHHHHhcccC
Q 013867 199 ---------GLVELA----HGNLESGLQEE----EGCTGSAALSYGEYLHA----TRNFLLAKKFYQKVIEVLAEQKDFS 257 (435)
Q Consensus 199 ---------~~~~~l----gg~h~~a~~~~----~~~~~~~a~~la~~~~~----~G~y~eAe~ly~rAL~I~~~~~~~~ 257 (435)
+.+... .++.+.|...+ ......+..++|.+|.. .+++++|..+|++|++. +
T Consensus 217 ~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-----~-- 289 (490)
T 2xm6_A 217 GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-----G-- 289 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-----T--
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-----C--
Confidence 011111 11111111111 11223455667777777 78888888888887633 1
Q ss_pred CCCCcccccccchHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhh
Q 013867 258 DMNTLGSCNMALEEVALAATFALGQLEAHM-----GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 332 (435)
Q Consensus 258 ~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q-----G~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~ 332 (435)
+ ..+..+||.+|... +++++|..+|++|++. .+| .++++||.+|...|..
T Consensus 290 -~--------------~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------~~~---~a~~~lg~~y~~~g~~ 344 (490)
T 2xm6_A 290 -N--------------SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------GDA---TAQANLGAIYFRLGSE 344 (490)
T ss_dssp -C--------------HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHHSCCH
T ss_pred -C--------------HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------CCH---HHHHHHHHHHHhCCCc
Confidence 0 13567888888887 8888888888888763 233 4678888888776511
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHH----hcCHHHHhhHhhhhhhH--HHHHHHHHHHHhc
Q 013867 333 EHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA----RGGYAEALSVQQNRKDE--GERMKRWAEAAWR 405 (435)
Q Consensus 333 e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a----~G~yaeal~~~~~r~~e--ae~~~~~a~~~~~ 405 (435)
. .+.+|..+|++|++. ++ .....+++.+|.. .+++.+|+..+.+-.+. .+.+...+..+..
T Consensus 345 ~---~~~~A~~~~~~a~~~------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 345 E---EHKKAVEWFRKAAAK------GE---KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYY 411 (490)
T ss_dssp H---HHHHHHHHHHHHHHT------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c---cHHHHHHHHHHHHHC------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 1 133447788888764 22 2356678888877 77888887776442222 3444444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=111.66 Aligned_cols=105 Identities=12% Similarity=0.121 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+..++|..+..+|+|++|+.+|++||++. |+ ...+++|+|.+|..+|+|++|+..|++|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~------------------p~--~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD------------------PS--NITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CC--CHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 345568899999999999999999999981 11 1246889999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.+... ....|+.++.++.++|.+|..+|++++| ...|++||++.
T Consensus 69 l~~~~~-~~~~~~~~a~~~~~lg~~~~~~~~~~~A------~~~~~kal~~~ 113 (127)
T 4gcn_A 69 VEVGRE-TRADYKLIAKAMSRAGNAFQKQNDLSLA------VQWFHRSLSEF 113 (127)
T ss_dssp HHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS
T ss_pred HHhCcc-cchhhHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhC
Confidence 999765 4567889999999999999999998876 89999999875
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-12 Score=136.04 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=29.4
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
.|++++|+.+|++++++ +|..+..+.++|.+|..+|+|++|++.|++++++.
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 53 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH 53 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 37899999999999865 35667889999999999999999999999986543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.43 E-value=8e-12 Score=115.40 Aligned_cols=199 Identities=9% Similarity=0.039 Sum_probs=131.8
Q ss_pred HHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhH
Q 013867 63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL 142 (435)
Q Consensus 63 ~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L 142 (435)
..+.+.|..+. ..|+|++|+..|++++... |+.|.....+.++|.+|..+|+|++|+..|+++++..
T Consensus 5 ~~~~~~a~~~~----~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---- 71 (225)
T 2yhc_A 5 NEIYATAQQKL----QDGNWRQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN---- 71 (225)
T ss_dssp HHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC----
Confidence 44566677764 3689999999999999765 5667788999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHHHhcCCCcchHH-HHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhH
Q 013867 143 GVRVAAMEALAGLYLQLGQDDTSSV-VADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGS 221 (435)
Q Consensus 143 ~i~vaale~L~g~~~~~g~~~~A~~-~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~ 221 (435)
|...-.. ..-.+...+.. .+.. ...
T Consensus 72 ------------------P~~~~~~~a~~~~g~~~~~-------------------------~~~~-----------~~~ 97 (225)
T 2yhc_A 72 ------------------PTHPNIDYVMYMRGLTNMA-------------------------LDDS-----------ALQ 97 (225)
T ss_dssp ------------------TTCTTHHHHHHHHHHHHHH-------------------------HHC---------------
T ss_pred ------------------cCCCcHHHHHHHHHHHHHh-------------------------hhhh-----------hhh
Confidence 2211000 00001111100 0000 001
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHH-HH--------HHHHHHHHHHHHcCCHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV-AL--------AATFALGQLEAHMGNFGD 292 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~-~l--------~~l~nLa~ly~~qG~y~e 292 (435)
....++..+..+|++++|+..|+++++.. ++++ .+ ++-. .+ .....+|.+|..+|+|++
T Consensus 98 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------P~~~-~a-----~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 165 (225)
T 2yhc_A 98 GFFGVDRSDRDPQQARAAFSDFSKLVRGY------PNSQ-YT-----TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA 165 (225)
T ss_dssp ----------CCHHHHHHHHHHHHHHTTC------TTCT-TH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hhhccchhhcCcHHHHHHHHHHHHHHHHC------cCCh-hH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 11233455677899999999999998772 1111 11 0000 00 111478999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 293 AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 293 Ae~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
|...|++++.++ |++|.+..++.++|.+|..+|++++| ...+++++.-
T Consensus 166 A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A------~~~~~~l~~~ 213 (225)
T 2yhc_A 166 VVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQA------EKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHC
T ss_pred HHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHH------HHHHHHHHhh
Confidence 999999999875 67888899999999999999998876 7777766543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.2e-12 Score=115.15 Aligned_cols=166 Identities=13% Similarity=0.045 Sum_probs=120.2
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHH----------------HHHHHHHcCCHH
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLA----------------MSTLLYESGNYV 125 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~n----------------La~ly~~qGky~ 125 (435)
+..+...|..+. ..|+|++|+.+|++++.+. |+-+..+.. +|.+|..+|+|+
T Consensus 4 ~~~~~~~g~~~~----~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 71 (208)
T 3urz_A 4 VDEMLQKVSAAI----EAGQNGQAVSYFRQTIALN--------IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYD 71 (208)
T ss_dssp HHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC--------CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHH
Confidence 456677787774 3689999999999999765 555566666 999999999999
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhc
Q 013867 126 EAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAH 205 (435)
Q Consensus 126 eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lg 205 (435)
+|+..|++++.+ .|.
T Consensus 72 ~A~~~~~~al~~----------------------~p~------------------------------------------- 86 (208)
T 3urz_A 72 KAYLFYKELLQK----------------------APN------------------------------------------- 86 (208)
T ss_dssp HHHHHHHHHHHH----------------------CTT-------------------------------------------
T ss_pred HHHHHHHHHHHH----------------------CCC-------------------------------------------
Confidence 999999887332 222
Q ss_pred CCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHH
Q 013867 206 GNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA 285 (435)
Q Consensus 206 g~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~ 285 (435)
...+..++|.+|..+|+|++|+..|++++++ . |+ ...++++||.+|.
T Consensus 87 -------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----------~-------P~--~~~a~~~lg~~~~ 133 (208)
T 3urz_A 87 -------------NVDCLEACAEMQVCRGQEKDALRMYEKILQL-----------E-------AD--NLAANIFLGNYYY 133 (208)
T ss_dssp -------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------C-------CC--CHHHHHHHHHHHH
Confidence 1123345677888999999999999999998 1 11 1246789999998
Q ss_pred HcCCH--HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 286 HMGNF--GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 286 ~qG~y--~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.+|+. ++++..|.+++ -++ .......++|..+..+|+|++| +..|++|+++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~-------~~~--~~~~a~~~~g~~~~~~~~~~~A------~~~~~~al~l~ 187 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-------SPT--KMQYARYRDGLSKLFTTRYEKA------RNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHHHC----------CCC--HHHHHHHHHHHHHHHHHTHHHH------HHHHHHHTTTS
T ss_pred HHhHHHHHHHHHHHHHHh-------CCC--chhHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC
Confidence 87754 34555555543 232 2334577889999999998766 89999999876
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.8e-11 Score=121.96 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHHHh-----hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC---CH
Q 013867 219 TGSAALSYGEYLHAT-----RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG---NF 290 (435)
Q Consensus 219 ~~~~a~~la~~~~~~-----G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG---~y 290 (435)
...+...+|.+|... +++++|+.+|++|++. + + ..+.++||.+|...| ++
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-----~---~--------------~~a~~~lg~~y~~~g~~~~~ 347 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-----G---D--------------ATAQANLGAIYFRLGSEEEH 347 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-----T---C--------------HHHHHHHHHHHHHSCCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-----C---C--------------HHHHHHHHHHHHhCCCcccH
Confidence 345667889898887 9999999999999865 1 1 135789999999977 89
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHH----hhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhh
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKV 366 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~----qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l 366 (435)
++|..+|++|++. .+ ..++++||.+|.. ++++++| ..+|++|++. ++ ....
T Consensus 348 ~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A------~~~~~~A~~~------~~---~~a~ 402 (490)
T 2xm6_A 348 KKAVEWFRKAAAK-------GE---KAAQFNLGNALLQGKGVKKDEQQA------AIWMRKAAEQ------GL---SAAQ 402 (490)
T ss_dssp HHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHH------HHHHHHHHHT------TC---HHHH
T ss_pred HHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHH------HHHHHHHHhC------CC---HHHH
Confidence 9999999999874 23 4689999999999 7887666 8999999873 22 3467
Q ss_pred ccHHHHHHH----hcCHHHHhhHhhh
Q 013867 367 DRTDIVALA----RGGYAEALSVQQN 388 (435)
Q Consensus 367 ~nla~~~~a----~G~yaeal~~~~~ 388 (435)
.|++.+|.. .+++.+|...+.+
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 789999988 8899999887644
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.8e-12 Score=114.12 Aligned_cols=125 Identities=18% Similarity=0.134 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
..++|.+|..+|+|++|+..|++++++ . |+ ...++.+||.+|..+|+|++|+..|+++++
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----------~-------p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQK-----------A-------PN--NVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH-----------C-------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445788999999999999999999998 1 11 124678999999999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHH
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEA 382 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaea 382 (435)
+ +|+-..++++||.+|..+|+.+.+ .++..|++++ .+. |. .....++++++...|+|++|
T Consensus 117 ~--------~P~~~~a~~~lg~~~~~~~~~~~~----~~~~~~~~~~------~~~-~~-~~a~~~~g~~~~~~~~~~~A 176 (208)
T 3urz_A 117 L--------EADNLAANIFLGNYYYLTAEQEKK----KLETDYKKLS------SPT-KM-QYARYRDGLSKLFTTRYEKA 176 (208)
T ss_dssp H--------CTTCHHHHHHHHHHHHHHHHHHHH----HHHHHHC---------CCC-HH-HHHHHHHHHHHHHHHTHHHH
T ss_pred c--------CCCCHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHh------CCC-ch-hHHHHHHHHHHHHccCHHHH
Confidence 7 466677899999999988875432 3344444432 111 21 22345678888889999999
Q ss_pred hhHhh
Q 013867 383 LSVQQ 387 (435)
Q Consensus 383 l~~~~ 387 (435)
+..++
T Consensus 177 ~~~~~ 181 (208)
T 3urz_A 177 RNSLQ 181 (208)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87663
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=6.4e-12 Score=116.04 Aligned_cols=222 Identities=9% Similarity=-0.051 Sum_probs=147.7
Q ss_pred CChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 57 ~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
..|..+..+..+|..+.. .|+|++|+.+|++++.+. |....++.++|.+|..+|+|++|++.|++++.
T Consensus 38 ~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 105 (275)
T 1xnf_A 38 TDDERAQLLYERGVLYDS----LGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105 (275)
T ss_dssp CHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHH----cccHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 356788899999999853 689999999999999874 44567899999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccc-
Q 013867 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEE- 215 (435)
Q Consensus 137 i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~- 215 (435)
+.+.. ..++..++.++..+|.+..|....+.++.+... .. ....... +. ...|+++.|....
T Consensus 106 ~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----~~---~~~~~~~--~~----~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 106 LDPTY----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN----DP---FRSLWLY--LA----EQKLDEKQAKEVLK 168 (275)
T ss_dssp HCTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CH---HHHHHHH--HH----HHHHCHHHHHHHHH
T ss_pred cCccc----cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----Ch---HHHHHHH--HH----HHhcCHHHHHHHHH
Confidence 76543 234566777788888888777766666543211 00 0000000 00 0011211111000
Q ss_pred -----ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCH
Q 013867 216 -----EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF 290 (435)
Q Consensus 216 -----~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y 290 (435)
.+.. .....++.++..++++++|...|++++...... .|+ ....+.+||.+|..+|+|
T Consensus 169 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------~~~--~~~~~~~la~~~~~~g~~ 231 (275)
T 1xnf_A 169 QHFEKSDKE-QWGWNIVEFYLGNISEQTLMERLKADATDNTSL--------------AEH--LSETNFYLGKYYLSLGDL 231 (275)
T ss_dssp HHHHHSCCC-STHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH--------------HHH--HHHHHHHHHHHHHHTTCH
T ss_pred HHHhcCCcc-hHHHHHHHHHHHhcCHHHHHHHHHHHhcccccc--------------ccc--ccHHHHHHHHHHHHcCCH
Confidence 0100 122345666777888888888888887662110 011 134678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
++|..+|++++.+ .|+++. ..+.++...|++++|
T Consensus 232 ~~A~~~~~~al~~-----~p~~~~------~~~~~~~~l~~~~~a 265 (275)
T 1xnf_A 232 DSATALFKLAVAN-----NVHNFV------EHRYALLELSLLGQD 265 (275)
T ss_dssp HHHHHHHHHHHTT-----CCTTCH------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-----CchhHH------HHHHHHHHHHHHHhh
Confidence 9999999999986 243332 336677888888776
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-11 Score=117.77 Aligned_cols=215 Identities=14% Similarity=0.116 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHH-hhhhhHHHHHH
Q 013867 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLY-------ESGNY-------VEAIEKLQKVEN-FKNSILGVRVA 147 (435)
Q Consensus 83 ~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~-------~qGky-------~eA~~l~~ral~-i~e~~L~i~va 147 (435)
++|+.+|++++.+. |.-...+.++|.++. .+|++ ++|+..|++++. +.....
T Consensus 33 ~~a~~~~~~al~~~--------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~----- 99 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM----- 99 (308)
T ss_dssp HHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH-----
T ss_pred HHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH-----
Confidence 79999999999764 556677788888876 46886 999999999966 332211
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhH-HHHHH
Q 013867 148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGS-AALSY 226 (435)
Q Consensus 148 ale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~-~a~~l 226 (435)
.+....+.+....+. ++++...+.++ +. +. |.... +..++
T Consensus 100 -------------------~~~~~~~~~~~~~~~--~~~A~~~~~~a--l~-----~~-----------p~~~~~~~~~~ 140 (308)
T 2ond_A 100 -------------------LLYFAYADYEESRMK--YEKVHSIYNRL--LA-----IE-----------DIDPTLVYIQY 140 (308)
T ss_dssp -------------------HHHHHHHHHHHHTTC--HHHHHHHHHHH--HT-----SS-----------SSCTHHHHHHH
T ss_pred -------------------HHHHHHHHHHHhcCC--HHHHHHHHHHH--Hh-----cc-----------ccCccHHHHHH
Confidence 122233344444332 44444433332 22 11 22223 67788
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA-HMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~-~qG~y~eAe~l~~rAL~I~e 305 (435)
+.++..+|++++|...|++|+++- +.. . ....+.+.+.. .+|++++|..+|++++.+.
T Consensus 141 ~~~~~~~~~~~~A~~~~~~a~~~~--------p~~-~-----------~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~- 199 (308)
T 2ond_A 141 MKFARRAEGIKSGRMIFKKAREDA--------RTR-H-----------HVYVTAALMEYYCSKDKSVAFKIFELGLKKY- 199 (308)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTST--------TCC-T-----------HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC--------CCC-H-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999999999999999999999761 111 1 12334555533 4799999999999999973
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhH
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSV 385 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~ 385 (435)
|+-...+.+++.++..+|++++| ..+|+||+++..- .|+ +......+...++...|++++|..+
T Consensus 200 -------p~~~~~~~~~~~~~~~~g~~~~A------~~~~~~al~~~~l-~p~--~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 200 -------GDIPEYVLAYIDYLSHLNEDNNT------RVLFERVLTSGSL-PPE--KSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp -------TTCHHHHHHHHHHHHTTCCHHHH------HHHHHHHHHSSSS-CGG--GCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred -------CCcHHHHHHHHHHHHHCCCHHHH------HHHHHHHHhccCC-CHH--HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44567789999999999998776 8999999986321 121 1122333455566667777766544
Q ss_pred h
Q 013867 386 Q 386 (435)
Q Consensus 386 ~ 386 (435)
.
T Consensus 264 ~ 264 (308)
T 2ond_A 264 E 264 (308)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-11 Score=119.14 Aligned_cols=88 Identities=17% Similarity=0.082 Sum_probs=58.8
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG 309 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG 309 (435)
+..+|++++|+..|+++++. . |+ ......+||.+|..+|++++|+..|++++.+
T Consensus 195 l~~~~~~~~a~~~l~~al~~-----------~-------P~--~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~------ 248 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAE-----------N-------PE--DAALATQLALQLHQVGRNEEALELLFGHLRX------ 248 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHhhcccCccHHHHHHHHhc-----------C-------Cc--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------
Confidence 44567777777777777766 1 11 1134567777777777777777777777775
Q ss_pred CCChhH--HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 310 SHHPKV--GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 310 ~~HP~v--a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
+|+. +....+|+.+|..+|+.++| ...|+|+|..
T Consensus 249 --~p~~~~~~a~~~l~~~~~~~g~~~~a------~~~~r~al~~ 284 (287)
T 3qou_A 249 --DLTAADGQTRXTFQEILAALGTGDAL------ASXYRRQLYA 284 (287)
T ss_dssp --CTTGGGGHHHHHHHHHHHHHCTTCHH------HHHHHHHHHH
T ss_pred --ccccccchHHHHHHHHHHHcCCCCcH------HHHHHHHHHH
Confidence 3444 56677777777777776655 6777777754
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.8e-13 Score=140.17 Aligned_cols=183 Identities=12% Similarity=0.044 Sum_probs=135.7
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
++..|..+.++|..+. .+|+|++|+..|++++++ +|..+.+++++|.+|..+|+|++|++.|++++++
T Consensus 2 ~~~~a~~~~~lg~~~~----~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 69 (477)
T 1wao_1 2 ALKRAEELKTQANDYF----KAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69 (477)
T ss_dssp CHHHHTTSSSSSSSTT----TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred hHhHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4555666666666663 478999999999999977 4667899999999999999999999999987332
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
.|.
T Consensus 70 ----------------------~p~------------------------------------------------------- 72 (477)
T 1wao_1 70 ----------------------DKK------------------------------------------------------- 72 (477)
T ss_dssp ----------------------CTT-------------------------------------------------------
T ss_pred ----------------------CCC-------------------------------------------------------
Confidence 221
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHH--HHHcCCHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQL--EAHMGNFGDAEE 295 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~l--y~~qG~y~eAe~ 295 (435)
...+..++|.+|..+|+|++|+..|++|+++. . ... .+..+++.+ +..+|+|++|++
T Consensus 73 -~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---p------~~~-----------~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 73 -YIKGYYRRAASNMALGKFRAALRDYETVVKVK---P------HDK-----------DAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---T------TCT-----------THHHHHHHHHHHHHHHHHCCC--
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C------CCH-----------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 11233456777889999999999999999981 1 111 235677777 899999999999
Q ss_pred HHH-----------HHHHHHHHhhCCCChhH---HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 296 ILT-----------RTLTKTEELFGSHHPKV---GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 296 l~~-----------rAL~I~e~~lG~~HP~v---a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
+|+ +++.+.....|+.||+. ...+.++...+..+++..+. +...++.++.+|++.
T Consensus 132 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~----~v~~L~~~a~eil~~ 200 (477)
T 1wao_1 132 GDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRK----CAYQILVQVKEVLSK 200 (477)
T ss_dssp ----CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHH----HHHHHHHHHHHHHHT
T ss_pred cccccchhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHHHcc
Confidence 999 99999999999999984 55566666666666666554 457799999999953
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-11 Score=111.91 Aligned_cols=173 Identities=11% Similarity=0.025 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhc
Q 013867 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT 186 (435)
Q Consensus 107 ~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~e 186 (435)
++..+.++|..+..+|+|++|+..|++++.. .|... +
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~----------------------~p~~~-------------------~-- 39 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNR----------------------YPFGP-------------------Y-- 39 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------------CTTST-------------------T--
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCCCh-------------------H--
Confidence 4677899999999999999999999987321 22210 0
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q 013867 187 YGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN 266 (435)
Q Consensus 187 aeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~ 266 (435)
...+...+|.+|..+|+|++|+..|++++++. ++++.
T Consensus 40 --------------------------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~------P~~~~----- 76 (225)
T 2yhc_A 40 --------------------------------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN------PTHPN----- 76 (225)
T ss_dssp --------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCTT-----
T ss_pred --------------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC------cCCCc-----
Confidence 01233445677888999999999999999871 11111
Q ss_pred ccchHHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHH---------
Q 013867 267 MALEEVALAATFALGQLEAH------------------MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL--------- 319 (435)
Q Consensus 267 ~~~~~~~l~~l~nLa~ly~~------------------qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L--------- 319 (435)
...++..+|.+|.. +|++++|...|++++..+ |++|.+-.++
T Consensus 77 ------~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 77 ------IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp ------HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHH
Confidence 11256677777765 789999999999998763 6777654433
Q ss_pred -----HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 320 -----TCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 320 -----~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
..+|.+|..+|++++| ...|++++++. |++|.....+.+++.++..+|++++|+...
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A------~~~~~~~l~~~----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAV------VNRVEGMLRDY----PDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHS----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcHHHH------HHHHHHHHHHC----cCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 5788899999997766 89999999987 455666678889999999999999998765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=8.7e-11 Score=113.54 Aligned_cols=190 Identities=11% Similarity=0.076 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCC
Q 013867 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQ 161 (435)
Q Consensus 82 Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~ 161 (435)
+++|+.+|++++.+. +|+-...+.++|.++..+|++++|+..|++++.+..
T Consensus 80 ~~~A~~~~~rAl~~~-------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---------------------- 130 (308)
T 2ond_A 80 SDEAANIYERAISTL-------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED---------------------- 130 (308)
T ss_dssp HHHHHHHHHHHHTTT-------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS----------------------
T ss_pred hHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc----------------------
Confidence 599999999999732 355667889999999999999999999999966432
Q ss_pred CcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHH-HHhhchHHHH
Q 013867 162 DDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYL-HATRNFLLAK 240 (435)
Q Consensus 162 ~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~-~~~G~y~eAe 240 (435)
... .......+.+....+. +++|...+ .+++. .. |+...+....+.+. ..+|++++|.
T Consensus 131 ~~~-~~~~~~~~~~~~~~~~--~~~A~~~~--~~a~~-----~~-----------p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 131 IDP-TLVYIQYMKFARRAEG--IKSGRMIF--KKARE-----DA-----------RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp SCT-HHHHHHHHHHHHHHHC--HHHHHHHH--HHHHT-----ST-----------TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCc-cHHHHHHHHHHHHhcC--HHHHHHHH--HHHHh-----cC-----------CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 211 0012223333332221 33333332 23222 11 11223334444442 3479999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh-HHHHH
Q 013867 241 KFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK-VGVVL 319 (435)
Q Consensus 241 ~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~-va~~L 319 (435)
.+|++++++. |+ ....+.++|.++..+|++++|..+|++|+.+. +-.|+ -....
T Consensus 190 ~~~~~al~~~------------------p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----~l~p~~~~~l~ 244 (308)
T 2ond_A 190 KIFELGLKKY------------------GD--IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-----SLPPEKSGEIW 244 (308)
T ss_dssp HHHHHHHHHH------------------TT--CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-----SSCGGGCHHHH
T ss_pred HHHHHHHHhC------------------CC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-----CCCHHHHHHHH
Confidence 9999999982 11 01356899999999999999999999999751 12343 46678
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 320 TCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 320 ~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.+++.++...|++++| +.+++|++++.
T Consensus 245 ~~~~~~~~~~g~~~~a------~~~~~~a~~~~ 271 (308)
T 2ond_A 245 ARFLAFESNIGDLASI------LKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHSCHHHH------HHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHH------HHHHHHHHHHc
Confidence 8889999999998776 89999999987
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5.5e-12 Score=124.87 Aligned_cols=170 Identities=15% Similarity=0.122 Sum_probs=127.5
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
.+++++|+..|++++.. .|..+..+.++|.+|..+|+|++|+..|++++.+.+..
T Consensus 126 L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~----------------- 180 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE--------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYE----------------- 180 (336)
T ss_dssp EEEEECCCCGGGCCHHH--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC-----------------
T ss_pred EeecccccchhcCCHHH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcc-----------------
Confidence 34566677666666533 47889999999999999999999999999986543211
Q ss_pred cCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHH
Q 013867 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLL 238 (435)
Q Consensus 159 ~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~e 238 (435)
+. . . .. ....+. +....+..++|.+|..+|+|++
T Consensus 181 --~~-~----------------~--~~-------~~~~~~------------------~~~~~~~~nla~~~~~~g~~~~ 214 (336)
T 1p5q_A 181 --SS-F----------------S--NE-------EAQKAQ------------------ALRLASHLNLAMCHLKLQAFSA 214 (336)
T ss_dssp --CC-C----------------C--SH-------HHHHHH------------------HHHHHHHHHHHHHHHHTTCHHH
T ss_pred --cc-C----------------C--hH-------HHHHHH------------------HHHHHHHHHHHHHHHHcCCHHH
Confidence 00 0 0 00 000000 1122456778999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 013867 239 AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVV 318 (435)
Q Consensus 239 Ae~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~ 318 (435)
|+..|++||++. + . ...+++++|.+|..+|+|++|+..|++|+++ .|+...+
T Consensus 215 A~~~~~~al~~~--------p-~-----------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a 266 (336)
T 1p5q_A 215 AIESCNKALELD--------S-N-----------NEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAA 266 (336)
T ss_dssp HHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHH
T ss_pred HHHHHHHHHHhC--------C-C-----------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHH
Confidence 999999999981 1 1 1246889999999999999999999999997 4666678
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 319 LTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 319 L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.+|+.+|..+|++++|. ..+|++.+..+
T Consensus 267 ~~~l~~~~~~~~~~~~a~-----~~~~~~~~~~~ 295 (336)
T 1p5q_A 267 KTQLAVCQQRIRRQLARE-----KKLYANMFERL 295 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHh
Confidence 999999999999988762 56788887766
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-11 Score=105.78 Aligned_cols=103 Identities=10% Similarity=-0.016 Sum_probs=88.3
Q ss_pred ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013867 216 EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE 295 (435)
Q Consensus 216 ~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~ 295 (435)
+|....+..+.|..|..+|+|++|+..|++||++- + . ....+.++|.+|..+|+|++|+.
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~~~~~~~~~~~~~~A~~ 68 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--------P-E-----------NAILYSNRAACLTKLMEFQRALD 68 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C-C-----------CHHHHHHHhhHHHhhccHHHHHH
Confidence 35666777788999999999999999999999881 1 1 12467899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 296 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 296 l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.|++|+.+ .|+...++.++|.+|..+|++++| +..|+++|++-
T Consensus 69 ~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A------~~~~~~al~l~ 111 (126)
T 4gco_A 69 DCDTCIRL--------DSKFIKGYIRKAACLVAMREWSKA------QRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC
T ss_pred HHHHHHHh--------hhhhhHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHC
Confidence 99999987 455667899999999999998876 89999999985
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.7e-12 Score=137.23 Aligned_cols=174 Identities=14% Similarity=0.022 Sum_probs=119.1
Q ss_pred CChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 57 ~~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
.+|+.+..+.++|..+. .+|+|++|+..|++++++. |.-+..++++|.+|..+|+|++|++.|+++++
T Consensus 428 ~~p~~~~~~~~~a~~~~----~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 495 (681)
T 2pzi_A 428 DFSESVELPLMEVRALL----DLGDVAKATRKLDDLAERV--------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLD 495 (681)
T ss_dssp CCTTCSHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHH----hcCCHHHHHHHHHHHhccC--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444455666666663 3689999999999999764 55678999999999999999999999999976
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccc
Q 013867 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEE 216 (435)
Q Consensus 137 i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~ 216 (435)
+...... ++.+++ .++...+. |++ .. .+.+++.. .
T Consensus 496 l~P~~~~----~~~~lg--------------------~~~~~~g~--~~~-~~--~~~~al~~-----~----------- 530 (681)
T 2pzi_A 496 TFPGELA----PKLALA--------------------ATAELAGN--TDE-HK--FYQTVWST-----N----------- 530 (681)
T ss_dssp HSTTCSH----HHHHHH--------------------HHHHHHTC--CCT-TC--HHHHHHHH-----C-----------
T ss_pred hCCCChH----HHHHHH--------------------HHHHHcCC--hHH-HH--HHHHHHHh-----C-----------
Confidence 5433211 122222 33333332 333 33 34444442 1
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH-HH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA-EE 295 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA-e~ 295 (435)
|....+..++|.+|..+|+|++|+..|++|+++ . |+ ...+..++|.+|...|++++| +.
T Consensus 531 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----------~-------P~--~~~a~~~~~~~~~~~~~~~~~~~~ 590 (681)
T 2pzi_A 531 DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT-----------S-------RH--FTTARLTSAVTLLSGRSTSEVTEE 590 (681)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT-----------S-------TT--HHHHHHHHHHHTC-------CCHH
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc-----------C-------cc--cHHHHHHHHHHHHccCCCCCCCHH
Confidence 445568889999999999999999999999977 1 11 235678999999999998888 88
Q ss_pred HHHHHHHHHHHh
Q 013867 296 ILTRTLTKTEEL 307 (435)
Q Consensus 296 l~~rAL~I~e~~ 307 (435)
-+++|+...++.
T Consensus 591 ~~~~A~~~l~~~ 602 (681)
T 2pzi_A 591 QIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHhhC
Confidence 999999877654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.1e-12 Score=106.99 Aligned_cols=100 Identities=11% Similarity=0.084 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
.+..+||..|..+|+|++|+..|++|+++ +|+.+.+++|+|.+|..+|+|++| +..|++||+|...
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A------~~~~~~al~~~~~ 74 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAEC------VQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHH------HHHHHHHHHhCcc
Confidence 35679999999999999999999999987 677888999999999999998876 8999999999865
Q ss_pred CCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 355 PPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
...+++..+..+.+++.++..+|+|.+|+..+.+
T Consensus 75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5667777888999999999999999999887744
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-11 Score=108.92 Aligned_cols=167 Identities=13% Similarity=0.013 Sum_probs=115.4
Q ss_pred HHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhH
Q 013867 63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL 142 (435)
Q Consensus 63 ~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L 142 (435)
..+...|..+. ..|+|++|+.+|++++++. |+-...+.++|.+|..+|++++|+..|++++.+.. ..
T Consensus 7 ~~~~~~a~~~~----~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~ 73 (176)
T 2r5s_A 7 EQLLKQVSELL----QQGEHAQALNVIQTLSDEL--------QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN 73 (176)
T ss_dssp TTHHHHHHHHH----HTTCHHHHHHHHHTSCHHH--------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH
T ss_pred HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch
Confidence 34667777764 3689999999999999654 56678899999999999999999999999855432 10
Q ss_pred HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHH
Q 013867 143 GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSA 222 (435)
Q Consensus 143 ~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~ 222 (435)
.. . .+ ...+.+..... ..+++....+++.. +|....+
T Consensus 74 --~~--~-~~-----------------~~~~~~~~~~~-----~~~a~~~~~~al~~----------------~P~~~~~ 110 (176)
T 2r5s_A 74 --SY--K-SL-----------------IAKLELHQQAA-----ESPELKRLEQELAA----------------NPDNFEL 110 (176)
T ss_dssp --HH--H-HH-----------------HHHHHHHHHHT-----SCHHHHHHHHHHHH----------------STTCHHH
T ss_pred --HH--H-HH-----------------HHHHHHHhhcc-----cchHHHHHHHHHHh----------------CCCCHHH
Confidence 00 0 00 00011111111 11233334444431 1445577
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
..++|.+|..+|+|++|+..|++++++ . |... ...+..+||.+|..+|++++|...|+++|.
T Consensus 111 ~~~la~~~~~~g~~~~A~~~~~~~l~~---~------p~~~---------~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 111 ACELAVQYNQVGRDEEALELLWNILKV---N------LGAQ---------DGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT---C------TTTT---------TTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh---C------cccC---------hHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 888999999999999999999999977 1 1111 013567999999999999999999999986
Q ss_pred H
Q 013867 303 K 303 (435)
Q Consensus 303 I 303 (435)
-
T Consensus 173 ~ 173 (176)
T 2r5s_A 173 S 173 (176)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-11 Score=103.05 Aligned_cols=116 Identities=9% Similarity=0.045 Sum_probs=90.9
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCc
Q 013867 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (435)
Q Consensus 104 Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~ 183 (435)
.|..|..+.++|..|+.+|+|++|++.|++++.+ .|.
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~----------------------~p~--------------------- 45 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR----------------------DPE--------------------- 45 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------CTT---------------------
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCC---------------------
Confidence 5899999999999999999999999999987432 221
Q ss_pred hhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 013867 184 YKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLG 263 (435)
Q Consensus 184 ~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~ 263 (435)
...+..++|.+|..+|+|++|+..|++|+++ . + .
T Consensus 46 -----------------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~-----p-~-- 79 (126)
T 4gco_A 46 -----------------------------------NAILYSNRAACLTKLMEFQRALDDCDTCIRL---D-----S-K-- 79 (126)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C-----T-T--
T ss_pred -----------------------------------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---h-----h-h--
Confidence 1123345677788999999999999999998 1 1 1
Q ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 013867 264 SCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM 325 (435)
Q Consensus 264 ~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~l 325 (435)
...++.++|.+|..+|+|++|+..|++||++ -|++++ +..+|+.+
T Consensus 80 ---------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l-----~P~~~~---a~~~l~~~ 124 (126)
T 4gco_A 80 ---------FIKGYIRKAACLVAMREWSKAQRAYEDALQV-----DPSNEE---AREGVRNC 124 (126)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH---HHHHHHHH
T ss_pred ---------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CcCCHH---HHHHHHHh
Confidence 1246889999999999999999999999997 455554 55566554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=108.74 Aligned_cols=103 Identities=7% Similarity=0.006 Sum_probs=88.5
Q ss_pred ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013867 216 EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE 295 (435)
Q Consensus 216 ~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~ 295 (435)
+|....+..++|.++..+|+|++|+.+|++++++ . |+ ....+.+||.+|..+|+|++|+.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----------~-------P~--~~~~~~~lg~~~~~~g~~~~Ai~ 91 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----------D-------FY--NVDYIMGLAAIYQIKEQFQQAAD 91 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------C-------CC--CHHHHHHHHHHHHHHccHHHHHH
Confidence 3666778888999999999999999999999998 1 11 11467899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 296 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 296 l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.|++|+.+. |++| ..+.|+|.+|..+|++++| +..|++|+++.
T Consensus 92 ~~~~al~l~-----P~~~---~~~~~lg~~~~~lg~~~eA------~~~~~~al~l~ 134 (151)
T 3gyz_A 92 LYAVAFALG-----KNDY---TPVFHTGQCQLRLKAPLKA------KECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHS-----SSCC---HHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC
T ss_pred HHHHHHhhC-----CCCc---HHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 999999873 5555 5799999999999998876 89999999986
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-10 Score=99.49 Aligned_cols=128 Identities=11% Similarity=-0.013 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.....+|..+..+|+|++|..+|++++++. . . ....+.++|.+|..+|+|++|...|+++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~------~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a 73 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN---P------S-----------NAIYYGNRSLAYLRTECYGYALGDATRA 73 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---T------T-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC---C------C-----------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445667888999999999999999999881 1 1 1245789999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHH
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYA 380 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ya 380 (435)
+.+ +|+...++.++|.+|..+|++++| ...|++++++. ++++.+. ..-.++..+..+|+|+
T Consensus 74 ~~~--------~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~a~~~~----p~~~~~~-~~~~~~~~~~~~~~~~ 134 (166)
T 1a17_A 74 IEL--------DKKYIKGYYRRAASNMALGKFRAA------LRDYETVVKVK----PHDKDAK-MKYQECNKIVKQKAFE 134 (166)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS----TTCHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHh--------CcccHHHHHHHHHHHHHhccHHHH------HHHHHHHHHhC----CCCHHHH-HHHHHHHHHHHHHHHH
Confidence 987 456667899999999999998776 89999999885 3334322 2223444477788888
Q ss_pred HHhhHhh
Q 013867 381 EALSVQQ 387 (435)
Q Consensus 381 eal~~~~ 387 (435)
+|+...+
T Consensus 135 ~A~~~~~ 141 (166)
T 1a17_A 135 RAIAGDE 141 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHccc
Confidence 8877764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-10 Score=105.05 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
..+.+.|..+...|+|++|+..|++||++. - +++...+.++.| ....+++|+|.++..+|+|++|...|.+|
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~---p---~~~~~~a~~~~~--~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS---H---TMPPEEAFDHAG--FDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---T---TSCTTSCCCHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---C---CCcchhhhhhcc--chHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 355677888999999999999999999993 1 111111111111 12347889999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHH----HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 301 LTKTEELFGSHHPKVGVVL----TCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L----~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|+++.+. |+-+|+-+..+ +|+|.+|...|++++| +..|++||+|-
T Consensus 84 L~l~n~~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEA------l~~y~kAlel~ 132 (159)
T 2hr2_A 84 LHYFNRR-GELNQDEGKLWISAVYSRALALDGLGRGAEA------MPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHH-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred HHhhhcc-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHH------HHHHHHHHhcC
Confidence 9986655 47789999999 9999999999998877 89999999997
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.7e-11 Score=107.18 Aligned_cols=128 Identities=13% Similarity=0.107 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
..++|..+..+|+|++|+.+|++++ . + . ..+++++|.+|..+|+|++|+..|++++.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-------~---~-~------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 65 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-------D---P-H------------SRICFNIGCMYTILKNMTEAEKAFTRSIN 65 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-------S---C-C------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-------C---C-C------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4557888999999999999999884 1 0 0 13678999999999999999999999998
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCC---------CCCCchhhhhccHHHHH
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP---------LESEGVETKVDRTDIVA 373 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~---------~~hp~~a~~l~nla~~~ 373 (435)
+ +|+...+++++|.+|..+|++++| +..|++++++..... ...|.....+.+++.++
T Consensus 66 ~--------~~~~~~~~~~lg~~~~~~~~~~~A------~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (213)
T 1hh8_A 66 R--------DKHLAVAYFQRGMLYYQTEKYDLA------IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMY 131 (213)
T ss_dssp H--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHH
T ss_pred h--------CccchHHHHHHHHHHHHcccHHHH------HHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHH
Confidence 7 366678899999999999998876 899999999763211 13445667888999999
Q ss_pred HHhcCHHHHhhHhh
Q 013867 374 LARGGYAEALSVQQ 387 (435)
Q Consensus 374 ~a~G~yaeal~~~~ 387 (435)
..+|+|++|+..+.
T Consensus 132 ~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 132 AKKEEWKKAEEQLA 145 (213)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHccCHHHHHHHHH
Confidence 99999999988763
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-10 Score=103.28 Aligned_cols=103 Identities=18% Similarity=0.108 Sum_probs=83.5
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
.++|.+|..+|+|++|+.+|++++++. + . ...+++++|.+|..+|+|++|+..|++++.+
T Consensus 41 ~~lg~~~~~~g~~~~A~~~~~~al~~~--------~-~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 41 FNIGCMYTILKNMTEAEKAFTRSINRD--------K-H-----------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--------c-c-----------chHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 345677889999999999999999981 1 1 1246789999999999999999999999986
Q ss_pred HHHhh--------CCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 304 TEELF--------GSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 304 ~e~~l--------G~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
....- ...+|....++.++|.+|..+|++++| ...|++++++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~ 151 (213)
T 1hh8_A 101 LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA------EEQLALATSMK 151 (213)
T ss_dssp TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTTC
T ss_pred CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH------HHHHHHHHHcC
Confidence 42110 114567889999999999999998876 89999999876
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.24 E-value=4e-10 Score=91.22 Aligned_cols=93 Identities=20% Similarity=0.309 Sum_probs=73.8
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
++.++..+|++++|+.+|++++.+. . . ....+.++|.+|..+|+|++|..+|++++.+
T Consensus 41 ~a~~~~~~~~~~~A~~~~~~~~~~~---~------~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-- 98 (136)
T 2fo7_A 41 LGNAYYKQGDYDEAIEYYQKALELD---P------R-----------SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-- 98 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC---T------T-----------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHC---C------C-----------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 4556677899999999999998771 1 1 0135678999999999999999999999975
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.|....++.++|.+|..+|++++| ...|++++++.
T Consensus 99 ------~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~ 133 (136)
T 2fo7_A 99 ------DPRSAEAWYNLGNAYYKQGDYDEA------IEYYQKALELD 133 (136)
T ss_dssp ------CTTCHHHHHHHHHHHHTTTCHHHH------HHHHHHHHHHS
T ss_pred ------CCCChHHHHHHHHHHHHHccHHHH------HHHHHHHHccC
Confidence 244456788999999999998776 78899988764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-10 Score=93.03 Aligned_cols=124 Identities=19% Similarity=0.264 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+...+|.++..+|+|++|+.+|++++.+ .. . ....+.++|.+|..+|++++|..+|++++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~------~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 62 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL---DP------R-----------SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT------T-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc---CC------c-----------chhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3456788899999999999999999987 11 1 11356789999999999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHH
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAE 381 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yae 381 (435)
.+ .|.....+.++|.+|..+|++++| ..++++++.+. |.......+++.++..+|++++
T Consensus 63 ~~--------~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~ 121 (136)
T 2fo7_A 63 EL--------DPRSAEAWYNLGNAYYKQGDYDEA------IEYYQKALELD-------PRSAEAWYNLGNAYYKQGDYDE 121 (136)
T ss_dssp HH--------CTTCHHHHHHHHHHHHTTTCHHHH------HHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHH
T ss_pred HH--------CCCchHHHHHHHHHHHHhcCHHHH------HHHHHHHHHhC-------CCChHHHHHHHHHHHHHccHHH
Confidence 76 344456789999999999998776 89999999874 2223456678999999999998
Q ss_pred HhhHh
Q 013867 382 ALSVQ 386 (435)
Q Consensus 382 al~~~ 386 (435)
|....
T Consensus 122 A~~~~ 126 (136)
T 2fo7_A 122 AIEYY 126 (136)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-10 Score=104.48 Aligned_cols=180 Identities=16% Similarity=0.063 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCc
Q 013867 84 QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDD 163 (435)
Q Consensus 84 eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~ 163 (435)
+|+.+|+++.+. .-+.++++||.+|..+|++++|++.|+++.+.. ...++.+|+.+|.. +
T Consensus 4 eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g------~~~a~~~lg~~y~~-~--- 63 (212)
T 3rjv_A 4 EPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG------DGDALALLAQLKIR-N--- 63 (212)
T ss_dssp CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHTTS-S---
T ss_pred hHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHc-C---
Confidence 788999999853 235689999999999999999999999985421 01122233333322 1
Q ss_pred chHHHHHHHHHHHHhcC-CCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHH----hhchHH
Q 013867 164 TSSVVADKCLQLCEKHK-PENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHA----TRNFLL 238 (435)
Q Consensus 164 ~A~~~~~~~~~l~~~~~-~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~----~G~y~e 238 (435)
+ +.++. +++..+.+++. +....+..++|.+|.. .+++++
T Consensus 64 ----------------g~~~~~~--~A~~~~~~A~~------------------~g~~~a~~~Lg~~y~~g~g~~~d~~~ 107 (212)
T 3rjv_A 64 ----------------PQQADYP--QARQLAEKAVE------------------AGSKSGEIVLARVLVNRQAGATDVAH 107 (212)
T ss_dssp ----------------TTSCCHH--HHHHHHHHHHH------------------TTCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred ----------------CCCCCHH--HHHHHHHHHHH------------------CCCHHHHHHHHHHHHcCCCCccCHHH
Confidence 1 11233 33333444332 1134577788988887 889999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 013867 239 AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH----MGNFGDAEEILTRTLTKTEELFGSHHPK 314 (435)
Q Consensus 239 Ae~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~----qG~y~eAe~l~~rAL~I~e~~lG~~HP~ 314 (435)
|+.+|++|++. + + . .+ ...++++||.+|.. .+++++|..+|++|+++ +.+|.
T Consensus 108 A~~~~~~A~~~-----~---~-~-------~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~ 163 (212)
T 3rjv_A 108 AITLLQDAARD-----S---E-S-------DA--AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL------SRTGY 163 (212)
T ss_dssp HHHHHHHHTSS-----T---T-S-------HH--HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT------SCTTH
T ss_pred HHHHHHHHHHc-----C---C-C-------cc--hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc------CCCHH
Confidence 99999999866 1 1 0 00 13578999999999 99999999999999864 23444
Q ss_pred HHHHHHHHHHHHHHh-h-----hhhhhhhhHHHHHHHHHHHHHh
Q 013867 315 VGVVLTCLALMFRNK-A-----MQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 315 va~~L~nLA~ly~~q-G-----~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++++||.+|... | ++++ |..+|++|++.-
T Consensus 164 ---a~~~Lg~~y~~g~gg~~~~d~~~------A~~~~~~A~~~g 198 (212)
T 3rjv_A 164 ---AEYWAGMMFQQGEKGFIEPNKQK------ALHWLNVSCLEG 198 (212)
T ss_dssp ---HHHHHHHHHHHCBTTTBCCCHHH------HHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHcCCCCCCCCCHHH------HHHHHHHHHHcC
Confidence 789999999865 3 5554 589999998873
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.23 E-value=6.7e-11 Score=117.08 Aligned_cols=139 Identities=11% Similarity=0.069 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccc-cccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC-NMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~-~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
...+..++|.+|..+|+|++|+.+|++|+++.. . .+.+... ..........+++|||.+|..+|+|++|+..|
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p---~---~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLE---Y---ESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 219 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT---T---CCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh---c---cccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445677789999999999999999999999931 1 1000000 00001112357789999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhc
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG 377 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G 377 (435)
++||.+ .|+...++.++|.+|..+|++++| +..|++|+++. |+......+++.++..+|
T Consensus 220 ~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A------~~~~~~al~l~-------P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 220 NKALEL--------DSNNEKGLSRRGEAHLAVNDFELA------RADFQKVLQLY-------PNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHC-------CCCHHHHHHHHHHHHHHH
Confidence 999998 466778999999999999998876 89999999985 344457788999999999
Q ss_pred CHHHHhh
Q 013867 378 GYAEALS 384 (435)
Q Consensus 378 ~yaeal~ 384 (435)
+|.++..
T Consensus 279 ~~~~a~~ 285 (336)
T 1p5q_A 279 RQLAREK 285 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998844
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.23 E-value=8.2e-10 Score=94.18 Aligned_cols=143 Identities=10% Similarity=0.010 Sum_probs=107.5
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch
Q 013867 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (435)
Q Consensus 105 p~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~ 184 (435)
...+..+.++|..+..+|+|++|+..|++++.+ .|..
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------------------~~~~--------------------- 46 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL----------------------NPSN--------------------- 46 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------STTC---------------------
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------------CCCC---------------------
Confidence 356788999999999999999999999887321 1110
Q ss_pred hchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 013867 185 KTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS 264 (435)
Q Consensus 185 ~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~ 264 (435)
..+..++|.++..+|+|++|+.+|++++++. + .
T Consensus 47 -----------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------~-~--- 79 (166)
T 1a17_A 47 -----------------------------------AIYYGNRSLAYLRTECYGYALGDATRAIELD--------K-K--- 79 (166)
T ss_dssp -----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T---
T ss_pred -----------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------c-c---
Confidence 1123345667788999999999999999981 1 1
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 013867 265 CNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGL 344 (435)
Q Consensus 265 ~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~L 344 (435)
...++.++|.+|..+|+|++|...|++++.+ .|+++.+- ....++..+..+|++++| ...
T Consensus 80 --------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~-~~~~~~~~~~~~~~~~~A------~~~ 139 (166)
T 1a17_A 80 --------YIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAK-MKYQECNKIVKQKAFERA------IAG 139 (166)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHH-HHHHHHHHHHHHHHHHHH------HHH
T ss_pred --------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHH-HHHHHHHHHHHHHHHHHH------HHc
Confidence 1245789999999999999999999999976 45666532 334555568889997776 889
Q ss_pred HHHHHHHhcCCCC
Q 013867 345 YRRALEFLKAPPL 357 (435)
Q Consensus 345 y~rAL~I~k~~~~ 357 (435)
|+++..++.....
T Consensus 140 ~~~~~~~~~~~~~ 152 (166)
T 1a17_A 140 DEHKRSVVDSLDI 152 (166)
T ss_dssp HHHHHHHHHHCCC
T ss_pred ccchHHHhcccch
Confidence 9999988854433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.22 E-value=6.3e-11 Score=105.04 Aligned_cols=169 Identities=16% Similarity=0.074 Sum_probs=111.3
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCc
Q 013867 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (435)
Q Consensus 104 Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~ 183 (435)
||+-...+..+|..+..+|+|++|+..|++++.+.+... .++..++.++..+|.+..|....+.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~~~~------------ 65 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG----DVKLAKADCLLETKQFELAQELLAT------------ 65 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH----HHHHHHHHHHHHTTCHHHHHHHHTT------------
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHH------------
Confidence 344455678999999999999999999999976554432 2334445555555544333221111
Q ss_pred hhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHH-HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCc
Q 013867 184 YKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEY-LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL 262 (435)
Q Consensus 184 ~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~-~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l 262 (435)
++. . .| .......++.+ +..+++..+|+..|++++++ .
T Consensus 66 ------------a~~-----~-----------~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-----------~- 104 (176)
T 2r5s_A 66 ------------IPL-----E-----------YQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAA-----------N- 104 (176)
T ss_dssp ------------CCG-----G-----------GC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-----------S-
T ss_pred ------------hhh-----c-----------cC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh-----------C-
Confidence 110 0 01 11111112222 23445667789999999988 1
Q ss_pred ccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH--HHHHHHHHHHHHHhhhhhhhhhhHH
Q 013867 263 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV--GVVLTCLALMFRNKAMQEHSSALLI 340 (435)
Q Consensus 263 ~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v--a~~L~nLA~ly~~qG~~e~A~~~~~ 340 (435)
|+ ....+.+||.+|..+|+|++|+..|++++.+ +|+. ...+.+||.+|..+|+.++|
T Consensus 105 ------P~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~a~~~l~~~~~~~g~~~~A----- 163 (176)
T 2r5s_A 105 ------PD--NFELACELAVQYNQVGRDEEALELLWNILKV--------NLGAQDGEVKKTFMDILSALGQGNAI----- 163 (176)
T ss_dssp ------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTTTTTHHHHHHHHHHHHHCSSCHH-----
T ss_pred ------CC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CcccChHHHHHHHHHHHHHhCCCCcH-----
Confidence 11 1246789999999999999999999999975 4443 45789999999999998776
Q ss_pred HHHHHHHHHHH
Q 013867 341 QEGLYRRALEF 351 (435)
Q Consensus 341 Ae~Ly~rAL~I 351 (435)
...|+++|.-
T Consensus 164 -~~~y~~al~~ 173 (176)
T 2r5s_A 164 -ASKYRRQLYS 173 (176)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 8999999864
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.22 E-value=8.8e-12 Score=129.81 Aligned_cols=149 Identities=11% Similarity=0.005 Sum_probs=113.4
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 225 ~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
++|..+..+|+|++|+.+|++|+++. +. ...+++++|.+|..+|+|++|+..|++|+++
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~---------p~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l- 69 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELN---------PS-----------NAIYYGNRSLAYLRTECYGYALGDATRAIEL- 69 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHC---------TT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC---------Cc-----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Confidence 34556778999999999999999981 11 1246789999999999999999999999987
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHH--HHHhcCHHHH
Q 013867 305 EELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIV--ALARGGYAEA 382 (435)
Q Consensus 305 e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~--~~a~G~yaea 382 (435)
+|+.+.+++++|.+|..+|++++| +..|++|+++. |+++ ....+++.+ +..+|+|++|
T Consensus 70 -------~p~~~~~~~~lg~~~~~~g~~~eA------~~~~~~al~~~----p~~~---~~~~~l~~~~~~~~~g~~~~A 129 (477)
T 1wao_1 70 -------DKKYIKGYYRRAASNMALGKFRAA------LRDYETVVKVK----PHDK---DAKMKYQECNKIVKQKAFERA 129 (477)
T ss_dssp -------CTTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHS----TTCT---THHHHHHHHHHHHHHHHHCCC
T ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC----CCCH---HHHHHHHHHHHHHHHHHHHHH
Confidence 788888999999999999998776 89999999984 3333 355667777 8889999999
Q ss_pred hhHhh-----------hh-----------hhH----HHHHHHHHHHHhcccchhHHHH
Q 013867 383 LSVQQ-----------NR-----------KDE----GERMKRWAEAAWRNRRVSLAEA 414 (435)
Q Consensus 383 l~~~~-----------~r-----------~~e----ae~~~~~a~~~~~~~r~~l~~~ 414 (435)
+..++ +. ... .+.+.++.+.+.+.++++..++
T Consensus 130 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v 187 (477)
T 1wao_1 130 IAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCA 187 (477)
T ss_dssp ------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHH
T ss_pred hccccccchhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHH
Confidence 98875 11 111 2455667777777778777666
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-10 Score=110.44 Aligned_cols=167 Identities=14% Similarity=0.052 Sum_probs=129.2
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch
Q 013867 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (435)
Q Consensus 105 p~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~ 184 (435)
|+-...+..+|..+..+|++++|++.|++++.+ .|+
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----------------------~P~---------------------- 149 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL----------------------SNQ---------------------- 149 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------TTS----------------------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh----------------------CCc----------------------
Confidence 456678889999999999999999999987332 222
Q ss_pred hchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 013867 185 KTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS 264 (435)
Q Consensus 185 ~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~ 264 (435)
...+..++|.+|..+|++++|+.+|+++++..
T Consensus 150 ----------------------------------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-------------- 181 (287)
T 3qou_A 150 ----------------------------------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD-------------- 181 (287)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--------------
T ss_pred ----------------------------------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--------------
Confidence 11233456778889999999999999997661
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 013867 265 CNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGL 344 (435)
Q Consensus 265 ~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~L 344 (435)
|+ ......+++..+..+|++++|+..|++++++ +|+-...+.+||.+|..+|++++| +..
T Consensus 182 ----p~--~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A------~~~ 241 (287)
T 3qou_A 182 ----QD--TRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEA------LEL 241 (287)
T ss_dssp ----CS--HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHH
T ss_pred ----cc--hHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHH------HHH
Confidence 11 1123457777888999999999999999986 677777899999999999998876 899
Q ss_pred HHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 345 YRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 345 y~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
|++++.+. |++.+ .....+++.++...|+.++|...+.+
T Consensus 242 l~~~l~~~----p~~~~-~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 242 LFGHLRXD----LTAAD-GQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHC----TTGGG-GHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhcc----ccccc-chHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 99999985 23322 44567889999999999988877744
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-10 Score=122.15 Aligned_cols=131 Identities=11% Similarity=-0.004 Sum_probs=109.5
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|....+..++|.+|..+|+|++|+.+|++++++. + . ...++.+||.+|..+|+|++|+.+
T Consensus 20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--------P-G-----------HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C-C-----------CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4445678889999999999999999999999871 1 1 124678999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
|++++++ +|+....+.+||.+|..+|++++| +..|++++++. |+....+.+++.++..+
T Consensus 80 ~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~-------p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 80 LQQASDA--------APEHPGIALWLGHALEDAGQAEAA------AAAYTRAHQLL-------PEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------TTCHHHHHHHHHHHHHT
T ss_pred HHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC-------CCCHHHHHHHHHHHHHh
Confidence 9999997 466677899999999999998876 89999999985 33345677899999999
Q ss_pred ---cCHHHHhhHhhh
Q 013867 377 ---GGYAEALSVQQN 388 (435)
Q Consensus 377 ---G~yaeal~~~~~ 388 (435)
|+|++|+..+.+
T Consensus 139 ~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 139 CDWRALDVLSAQVRA 153 (568)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred hccccHHHHHHHHHH
Confidence 999999887644
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-10 Score=95.58 Aligned_cols=98 Identities=13% Similarity=-0.024 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
......|..+..+|+|++|+.+|++++++. + . ....+.++|.+|..+|+|++|+..|+++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------P-E-----------DARGYSNRAAALAKLMSFPEAIADCNKA 64 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------C-C-----------ChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 455667888999999999999999999981 1 1 1246789999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.+ +|+...++.++|.+|..+|++++| ...|++++++.
T Consensus 65 l~~--------~p~~~~~~~~lg~~~~~~~~~~~A------~~~~~~al~~~ 102 (126)
T 3upv_A 65 IEK--------DPNFVRAYIRKATAQIAVKEYASA------LETLDAARTKD 102 (126)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred HHh--------CCCcHHHHHHHHHHHHHHhCHHHH------HHHHHHHHHhC
Confidence 987 466677899999999999998776 89999999998
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-10 Score=94.14 Aligned_cols=121 Identities=12% Similarity=0.022 Sum_probs=96.9
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
+....+...+|..+..+|+|++|+.+|++++++. + . ....+.++|.+|..+|+|++|+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------~-~-----------~~~~~~~la~~~~~~~~~~~A~~~ 72 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--------P-K-----------DAKLYSNRAACYTKLLEFQLALKD 72 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--------T-T-----------CHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------C-C-----------cHHHHHHHHHHHHHhccHHHHHHH
Confidence 5556777888999999999999999999999761 1 1 124678999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
|++++.+ .|+...++.++|.+|..+|++++| ...|++++++. |.......+++.++..+
T Consensus 73 ~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 73 CEECIQL--------EPTFIKGYTRKAAALEAMKDYTKA------MDVYQKALDLD-------SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------GGGTHHHHHHHHHHHHH
T ss_pred HHHHHHh--------CCCchHHHHHHHHHHHHHhhHHHH------HHHHHHHHHhC-------CCchHHHHHHHHHHHHh
Confidence 9999986 355567899999999999998776 89999999875 33334555677777666
Q ss_pred cC
Q 013867 377 GG 378 (435)
Q Consensus 377 G~ 378 (435)
|+
T Consensus 132 ~~ 133 (133)
T 2lni_A 132 YN 133 (133)
T ss_dssp TC
T ss_pred cC
Confidence 53
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=3.3e-10 Score=91.91 Aligned_cols=120 Identities=19% Similarity=0.192 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
...+...+|..+..+|+|++|+.+|++++.+. . . ....+.++|.+|..+|+|++|+..|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~------~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~ 70 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN---P------A-----------NAVYFCNRAAAYSKLGNYAGAVQDCE 70 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------T-----------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---C------C-----------CHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 44566778889999999999999999999881 1 1 01357899999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcC
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG 378 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ 378 (435)
+++.+ +|+...++.++|.+|..+|++++| ...|++++++. |+......+++.++...|+
T Consensus 71 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A------~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 71 RAICI--------DPAYSKAYGRMGLALSSLNKHVEA------VAYYKKALELD-------PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS-------TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhc--------CccCHHHHHHHHHHHHHhCCHHHH------HHHHHHHHhcC-------ccchHHHHHHHHHHHHHhc
Confidence 99986 455567899999999999998776 89999999884 2223456678888888777
Q ss_pred H
Q 013867 379 Y 379 (435)
Q Consensus 379 y 379 (435)
|
T Consensus 130 ~ 130 (131)
T 2vyi_A 130 A 130 (131)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.5e-10 Score=100.29 Aligned_cols=124 Identities=13% Similarity=0.028 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHH
Q 013867 237 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG 316 (435)
Q Consensus 237 ~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va 316 (435)
++.+.++++..++... +..-...+. ..|++ ..++.++|.+|..+|+|++|+.+|++++.+ +|+-.
T Consensus 6 ~~~~~~~~~l~~~~~~--~~~l~~al~---l~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~ 70 (151)
T 3gyz_A 6 TENESISTAVIDAINS--GATLKDINA---IPDDM--MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNV 70 (151)
T ss_dssp ---CHHHHHHHHHHHT--SCCTGGGCC---SCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HHHHHHHHHHHHHHHC--CCCHHHHhC---CCHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence 4556666666666432 111111222 33553 357899999999999999999999999987 45666
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 317 VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 317 ~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
..+.+||.+|..+|+|++| +..|++|+++. |++| ....|++.++...|+|++|+..+.+
T Consensus 71 ~~~~~lg~~~~~~g~~~~A------i~~~~~al~l~----P~~~---~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 71 DYIMGLAAIYQIKEQFQQA------ADLYAVAFALG----KNDY---TPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS----SSCC---HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHH------HHHHHHHHhhC----CCCc---HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6899999999999998876 89999999986 3444 4677999999999999999887743
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.5e-10 Score=99.59 Aligned_cols=101 Identities=15% Similarity=0.084 Sum_probs=87.2
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
........+|.++..+|+|++|+.+|++++++. + . ....++++|.+|..+|+|++|+..|
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~l~~~~~~~g~~~~A~~~~ 68 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------P-A-----------NPIYLSNRAAAYSASGQHEKAAEDA 68 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C-c-----------CHHHHHHHHHHHHHccCHHHHHHHH
Confidence 345567778999999999999999999999981 1 1 1246789999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++++.+ +|+...++.++|.+|..+|++++| ...|++++++.
T Consensus 69 ~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~ 109 (164)
T 3sz7_A 69 ELATVV--------DPKYSKAWSRLGLARFDMADYKGA------KEAYEKGIEAE 109 (164)
T ss_dssp HHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred HHHHHh--------CCCCHHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC
Confidence 999998 466678899999999999998876 89999999987
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-10 Score=97.48 Aligned_cols=116 Identities=15% Similarity=0.067 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
......|..+..+|+|++|+..|++|+.+....... +.+. .+.....+......++|+|.+|..+|+|++|...+++|
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILR-EKPG-EPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-SCTT-SHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccc-CCCC-HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 445667888999999999999999999997543321 1110 00000001223457789999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|.+ .|+...++.++|.+|..+|++++| ...|++++++.
T Consensus 90 l~~--------~p~~~~a~~~~g~~~~~~g~~~~A------~~~~~~al~l~ 127 (162)
T 3rkv_A 90 LKR--------EETNEKALFRRAKARIAAWKLDEA------EEDLKLLLRNH 127 (162)
T ss_dssp HHH--------STTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC
T ss_pred Hhc--------CCcchHHHHHHHHHHHHHhcHHHH------HHHHHHHHhcC
Confidence 998 566778999999999999998876 89999999984
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-10 Score=100.04 Aligned_cols=102 Identities=14% Similarity=-0.009 Sum_probs=86.0
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|....+...+|.++..+|+|++|+.+|++++.+- + . ....+.+||.+|..+|+|++|+..
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~lg~~~~~~g~~~~A~~~ 77 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--------H-Y-----------DSRFFLGLGACRQAMGQYDLAIHS 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------c-c-----------cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4445667788999999999999999999999881 1 1 114568999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|++|+.+ .|++| ..+.++|.+|..+|++++| +..|++++++.
T Consensus 78 ~~~al~l-----~p~~~---~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~ 119 (148)
T 2vgx_A 78 YSYGAVM-----DIXEP---RFPFHAAECLLQXGELAEA------ESGLFLAQELI 119 (148)
T ss_dssp HHHHHHH-----STTCT---HHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred HHHHHhc-----CCCCc---hHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence 9999987 35555 5689999999999998876 89999999998
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.16 E-value=8.4e-11 Score=121.43 Aligned_cols=169 Identities=12% Similarity=0.157 Sum_probs=119.3
Q ss_pred hcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 013867 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (435)
Q Consensus 80 G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~ 159 (435)
++|++|+..|++++. ..|..+..+.++|..|..+|+|++|+..|++++.+....
T Consensus 248 ~~~~~A~~~~~~~~~--------~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~------------------ 301 (457)
T 1kt0_A 248 KSFEKAKESWEMDTK--------EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME------------------ 301 (457)
T ss_dssp EEEECCCCGGGSCHH--------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC------------------
T ss_pred hhcccCcchhhcCHH--------HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc------------------
Confidence 345566655555443 357899999999999999999999999999996543211
Q ss_pred CCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHH
Q 013867 160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLA 239 (435)
Q Consensus 160 g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eA 239 (435)
+. . .++ + ...+. +....+.+++|.+|..+|+|++|
T Consensus 302 -~~-~-------------------~~~-~-----~~~~~------------------~~~~~~~~nla~~~~~~g~~~~A 336 (457)
T 1kt0_A 302 -YG-L-------------------SEK-E-----SKASE------------------SFLLAAFLNLAMCYLKLREYTKA 336 (457)
T ss_dssp -CS-C-------------------CHH-H-----HHHHH------------------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -cc-C-------------------ChH-H-----HHHHH------------------HHHHHHHHHHHHHHHHhcCHHHH
Confidence 00 0 000 0 00000 11224567789999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 013867 240 KKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL 319 (435)
Q Consensus 240 e~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L 319 (435)
+..|++||++. + . ...+++++|.+|..+|+|++|...|++|+++ .|+-..++
T Consensus 337 ~~~~~~al~~~--------p-~-----------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a~ 388 (457)
T 1kt0_A 337 VECCDKALGLD--------S-A-----------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAAR 388 (457)
T ss_dssp HHHHHHHHHHS--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CHH
T ss_pred HHHHHHHHhcC--------C-c-----------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 99999999981 1 1 1257899999999999999999999999986 56667889
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 320 TCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 320 ~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.+|+.+|..+|+++++. ..+|++.+.-+
T Consensus 389 ~~l~~~~~~~~~~~~a~-----~~~~~~~f~k~ 416 (457)
T 1kt0_A 389 LQISMCQKKAKEHNERD-----RRIYANMFKKF 416 (457)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHhhh
Confidence 99999999999988762 35666665444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-09 Score=89.71 Aligned_cols=126 Identities=10% Similarity=0.070 Sum_probs=99.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhc
Q 013867 100 GQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKH 179 (435)
Q Consensus 100 lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~ 179 (435)
.++..|.....+.++|..|..+|+|++|+..|++++.+ .+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----------------------~~~~---------------- 49 (133)
T 2lni_A 8 HSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR----------------------NPKD---------------- 49 (133)
T ss_dssp TCCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT----------------------CTTC----------------
T ss_pred CCCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------------CCCc----------------
Confidence 34677899999999999999999999999999987321 1110
Q ss_pred CCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCC
Q 013867 180 KPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM 259 (435)
Q Consensus 180 ~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~ 259 (435)
..+..++|.+|..+|+|++|+.+|++++++. .
T Consensus 50 ----------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~----- 81 (133)
T 2lni_A 50 ----------------------------------------AKLYSNRAACYTKLLEFQLALKDCEECIQLE---P----- 81 (133)
T ss_dssp ----------------------------------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---T-----
T ss_pred ----------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---C-----
Confidence 0123345667788999999999999999881 1
Q ss_pred CCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhh
Q 013867 260 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 331 (435)
Q Consensus 260 ~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~ 331 (435)
. ....+.++|.+|..+|+|++|+.+|++++.+ +|.....+.+++.+|..+|+
T Consensus 82 -~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 82 -T-----------FIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -T-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred -C-----------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 1 1145789999999999999999999999987 56677788999999988774
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-10 Score=101.84 Aligned_cols=136 Identities=7% Similarity=-0.014 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccc--cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC--NMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~--~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
.....+|..+..+|+|++|+.+|++++.+.. . .+..-.. ...........+.++|.+|..+|+|++|...|+
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFI---H---TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT---T---CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh---c---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3455678889999999999999999999831 1 1100000 000001112467899999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcC
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG 378 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ 378 (435)
+++.+ +|+...++.++|.+|..+|++++| +..|++++++. |+......+++.++...|+
T Consensus 113 ~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A------~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 113 KVLKI--------DKNNVKALYKLGVANMYFGFLEEA------KENLYKAASLN-------PNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHH--------STTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHh--------CcccHHHHHHHHHHHHHcccHHHH------HHHHHHHHHHC-------CCcHHHHHHHHHHHHHHHH
Confidence 99997 566778899999999999998876 89999999984 3334455667777777666
Q ss_pred HHHHh
Q 013867 379 YAEAL 383 (435)
Q Consensus 379 yaeal 383 (435)
+.++.
T Consensus 172 ~~~~~ 176 (198)
T 2fbn_A 172 ARKKD 176 (198)
T ss_dssp HHC--
T ss_pred HHHHH
Confidence 66544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=112.99 Aligned_cols=224 Identities=14% Similarity=0.053 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHH-------HHHHHHcCCHHHHHHHHH
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAM-------STLLYESGNYVEAIEKLQ 132 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nL-------a~ly~~qGky~eA~~l~~ 132 (435)
+...+|-..|+.+ + .+++++|.+.|.+++.+. |+-+...+++ +.++...+++.+++..++
T Consensus 5 ~~~~~~~~~~~~~-~----~~d~~~A~~~F~~a~~~d--------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~ 71 (282)
T 4f3v_A 5 DRLASLFESAVSM-L----PMSEARSLDLFTEITNYD--------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLS 71 (282)
T ss_dssp HHHHHHHHHHHHH-T----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHH
T ss_pred HHHHHHHHHHhcc-c----CCCHHHHHHHHHHHHHhC--------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHH
Confidence 3456777788876 3 478999999999999765 7788899999 899999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHH--HhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcc
Q 013867 133 KVENFKNSILGVRVAAMEALAGLY--LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES 210 (435)
Q Consensus 133 ral~i~e~~L~i~vaale~L~g~~--~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~ 210 (435)
+++.+....++.++. +.|+| .+. +-...-.+.-..+.++...+. |++|..++... +-+
T Consensus 72 ~~l~l~p~~l~a~~~----~~g~y~~~~~-~v~~r~dl~LayA~~L~~~g~--y~eA~~~l~~~---------~~~---- 131 (282)
T 4f3v_A 72 GSVQISMSTLNARIA----IGGLYGDITY-PVTSPLAITMGFAACEAAQGN--YADAMEALEAA---------PVA---- 131 (282)
T ss_dssp HTTTCCGGGGCCEEE----CCTTTCCCEE-ECSSHHHHHHHHHHHHHHHTC--HHHHHHHHTSS---------CCT----
T ss_pred HHhcCChhhhhhhhc----cCCccccccc-ccCCHhHHHHHHHHHHHHCCC--HHHHHHHHHHH---------Hhc----
Confidence 998877776643221 11222 000 001111122223334444342 55443332111 101
Q ss_pred cccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCH
Q 013867 211 GLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF 290 (435)
Q Consensus 211 a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y 290 (435)
+|... +..+++.++...|+|++|+.+|++++.. . ++. ....+..+||.++..+|+|
T Consensus 132 -----~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~-------~-d~~----------~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 132 -----GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW-------P-DKF----------LAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp -----TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC-------S-CHH----------HHHHHHHHHHHHHHHTTCH
T ss_pred -----CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc-------C-Ccc----------cHHHHHHHHHHHHHHCCCH
Confidence 13333 6677888999999999999999865433 0 101 1123568999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~-va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++|+..|++++. |+.-|. ....+.++|.++..+|+.++| ..+|++++++.
T Consensus 188 ~eAl~~l~~a~~------g~~~P~~~~da~~~~glaL~~lGr~deA------~~~l~~a~a~~ 238 (282)
T 4f3v_A 188 TEAERRLTEAND------SPAGEACARAIAWYLAMARRSQGNESAA------VALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHT------STTTTTTHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHS
T ss_pred HHHHHHHHHHhc------CCCCccccHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhcC
Confidence 999999999873 554387 778999999999999998876 89999999875
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-09 Score=88.24 Aligned_cols=117 Identities=18% Similarity=0.237 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 220 ~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~r 299 (435)
..+...+|.++...|+|++|+.+|++++.+. . . ...+++++|.+|..+|+|++|..+|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~------~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~ 68 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---P------N-----------NAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------T-----------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---c------C-----------cHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3456678889999999999999999999871 1 1 113578999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhc
Q 013867 300 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG 377 (435)
Q Consensus 300 AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G 377 (435)
++.+ +|+...++.++|.+|..+|++++| ...|++++++. |++ .....+++.++..+|
T Consensus 69 ~~~~--------~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~----~~~---~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 69 ALEL--------DPNNAEAWYNLGNAYYKQGDYDEA------IEYYQKALELD----PNN---AEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTC---HHHHHHHHHHHHHHC
T ss_pred HHHh--------CCccHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHhC----CCc---HHHHHHHHHHHHhcc
Confidence 9976 344567889999999999998776 89999999874 233 334455666665443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.14 E-value=8.2e-10 Score=89.73 Aligned_cols=105 Identities=12% Similarity=0.141 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.....+|.++..+|+|++|+.+|++++.+. + . ....+.++|.+|..+|+|++|..+|+++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~-~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--------P-T-----------NMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------C-c-----------cHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456678889999999999999999999881 1 1 1145789999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.+... .+++++....++.++|.+|..+|++++| ...|++++++.
T Consensus 65 ~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~ 109 (131)
T 1elr_A 65 IEVGRE-NREDYRQIAKAYARIGNSYFKEEKYKDA------IHFYNKSLAEH 109 (131)
T ss_dssp HHHHHH-STTCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC
T ss_pred Hhhccc-cchhHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHhC
Confidence 998764 3667777799999999999999998776 89999999864
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.13 E-value=8.7e-10 Score=90.90 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+...+|..+..+|+|++|+.+|++++.+. +++ .. ...++.++|.+|..+|+|++|...|++++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------p~~-~~----------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY------PNG-VY----------TPNALYWLGESYYATRNFQLAEAQFRDLV 66 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC------SSS-TT----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC------CCC-cc----------cHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34567888899999999999999999871 111 11 12467899999999999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.+ .|++|.+..++.++|.+|..+|++++| ...|++++++.
T Consensus 67 ~~-----~p~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~~~~~~ 106 (129)
T 2xev_A 67 SR-----YPTHDKAAGGLLKLGLSQYGEGKNTEA------QQTLQQVATQY 106 (129)
T ss_dssp HH-----CTTSTTHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS
T ss_pred HH-----CCCCcccHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence 85 588888899999999999999998876 89999999876
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-09 Score=110.73 Aligned_cols=28 Identities=4% Similarity=-0.086 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhh---chHHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATR---NFLLAKKFYQKVIEV 249 (435)
Q Consensus 222 ~a~~la~~~~~~G---~y~eAe~ly~rAL~I 249 (435)
+..++|.+|..+| ++++|+.+|++|.+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~ 208 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSR 208 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC
Confidence 5556666666677 777777777777654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-09 Score=88.31 Aligned_cols=123 Identities=13% Similarity=0.048 Sum_probs=92.9
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch
Q 013867 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (435)
Q Consensus 105 p~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~ 184 (435)
|..+..+.++|..+..+|+|++|+..|++++.+ .|..
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------------~p~~--------------------- 37 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR----------------------APED--------------------- 37 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------CTTC---------------------
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------------CCCC---------------------
Confidence 567889999999999999999999999987332 1210
Q ss_pred hchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 013867 185 KTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS 264 (435)
Q Consensus 185 ~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~ 264 (435)
..+..++|.+|..+|+|++|+..|++++++. + .
T Consensus 38 -----------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p-~--- 70 (126)
T 3upv_A 38 -----------------------------------ARGYSNRAAALAKLMSFPEAIADCNKAIEKD--------P-N--- 70 (126)
T ss_dssp -----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T---
T ss_pred -----------------------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------C-C---
Confidence 1233456777889999999999999999981 1 1
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 013867 265 CNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFR 327 (435)
Q Consensus 265 ~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~ 327 (435)
...++.++|.+|..+|+|++|...|++++.+.-..- +.|........|+.+..
T Consensus 71 --------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 71 --------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQ 123 (126)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHH
T ss_pred --------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHH
Confidence 124678999999999999999999999999975442 33555555666665544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-09 Score=98.37 Aligned_cols=144 Identities=13% Similarity=0.160 Sum_probs=107.2
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
.+.+..+..+.++|..+..+|+|++|++.|++++.+.... ++....
T Consensus 32 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-------------------~~~~~~--------------- 77 (198)
T 2fbn_A 32 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT-------------------EEWDDQ--------------- 77 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC-------------------TTCCCH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-------------------cccchh---------------
Confidence 3456788999999999999999999999999986543221 110000
Q ss_pred CchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 182 ENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
.+......+. ..+..++|.+|..+|+|++|+.+|++++++. + .
T Consensus 78 -------~~~~~~~~~~---------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p-~ 120 (198)
T 2fbn_A 78 -------ILLDKKKNIE---------------------ISCNLNLATCYNKNKDYPKAIDHASKVLKID--------K-N 120 (198)
T ss_dssp -------HHHHHHHHHH---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------T-T
T ss_pred -------hHHHHHHHHH---------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------c-c
Confidence 0000001110 1345667889999999999999999999981 1 1
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
...++.++|.+|..+|+|++|...|++++.+ +|+...++.+++.++..+++++++
T Consensus 121 -----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 121 -----------NVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp -----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHC-
T ss_pred -----------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 1246789999999999999999999999988 566677899999999999998776
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.11 E-value=9.7e-10 Score=91.56 Aligned_cols=102 Identities=14% Similarity=-0.015 Sum_probs=87.2
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
........+|.++..+|+|++|+.+|++++.+. + . ....++++|.+|..+|+|++|...|
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~-~-----------~~~~~~~l~~~~~~~~~~~~A~~~~ 66 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------P-L-----------VAVYYTNRALCYLKMQQPEQALADC 66 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------c-C-----------cHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 345677788999999999999999999999981 1 1 1246789999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
++++.+ +|+...++.++|.+|..+|++++| +..|++++++..
T Consensus 67 ~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A------~~~~~~a~~~~p 108 (137)
T 3q49_B 67 RRALEL--------DGQSVKAHFFLGQCQLEMESYDEA------IANLQRAYSLAK 108 (137)
T ss_dssp HHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHH
T ss_pred HHHHHh--------CchhHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHCh
Confidence 999987 355667899999999999998776 899999999984
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.11 E-value=6.3e-10 Score=95.24 Aligned_cols=102 Identities=13% Similarity=0.023 Sum_probs=85.9
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|........+|..+..+|+|++|+.+|++++.+. + + ....+.+||.+|..+|+|++|...
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p----------~--~~~~~~~lg~~~~~~g~~~~A~~~ 74 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--------H----------Y--DARYFLGLGACRQSLGLYEQALQS 74 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T----------T--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--------C----------c--cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4455667778999999999999999999999881 1 1 114578999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|++|+.+ .|++|. .+.++|.+|..+|++++| +..|++++++.
T Consensus 75 ~~~al~~-----~p~~~~---~~~~lg~~~~~~g~~~~A------~~~~~~al~~~ 116 (142)
T 2xcb_A 75 YSYGALM-----DINEPR---FPFHAAECHLQLGDLDGA------ESGFYSARALA 116 (142)
T ss_dssp HHHHHHH-----CTTCTH---HHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred HHHHHhc-----CCCCcH---HHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 9999986 456654 679999999999998876 89999999997
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.10 E-value=6.1e-09 Score=107.91 Aligned_cols=215 Identities=13% Similarity=0.089 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hhhhhHHHHHH
Q 013867 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-------SGNYV-------EAIEKLQKVEN-FKNSILGVRVA 147 (435)
Q Consensus 83 ~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~-------qGky~-------eA~~l~~ral~-i~e~~L~i~va 147 (435)
.+|+.+|++++... |.....+.++|.++.. +|+++ +|+..|++++. +....
T Consensus 255 ~~a~~~y~~al~~~--------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~------ 320 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN------ 320 (530)
T ss_dssp HHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC------
T ss_pred HHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc------
Confidence 58899999999764 4456778888998886 89988 88888888854 32211
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHH
Q 013867 148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYG 227 (435)
Q Consensus 148 ale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la 227 (435)
..+....+.+....+. ++++..++.++ +. ..+ .+...+..+++
T Consensus 321 ------------------~~l~~~~~~~~~~~g~--~~~A~~~~~~a--l~-----~~p----------~~~~~~~~~~~ 363 (530)
T 2ooe_A 321 ------------------MLLYFAYADYEESRMK--YEKVHSIYNRL--LA-----IED----------IDPTLVYIQYM 363 (530)
T ss_dssp ------------------HHHHHHHHHHHHHTTC--HHHHHHHHHHH--HH-----SSS----------SCHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHhcCC--HHHHHHHHHHH--hC-----ccc----------cCchHHHHHHH
Confidence 1222333444444442 44444443332 22 111 11123667788
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHH
Q 013867 228 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQL-EAHMGNFGDAEEILTRTLTKTEE 306 (435)
Q Consensus 228 ~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~l-y~~qG~y~eAe~l~~rAL~I~e~ 306 (435)
.++..+|++++|..+|++|+++ ++... ..+...+.+ +..+|++++|..+|+++|.+.
T Consensus 364 ~~~~~~~~~~~A~~~~~~Al~~---------~~~~~-----------~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-- 421 (530)
T 2ooe_A 364 KFARRAEGIKSGRMIFKKARED---------ARTRH-----------HVYVTAALMEYYCSKDKSVAFKIFELGLKKY-- 421 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---------TTCCT-----------HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--
T ss_pred HHHHHhcCHHHHHHHHHHHHhc---------cCCch-----------HHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--
Confidence 8999999999999999999875 11100 112233333 557999999999999999874
Q ss_pred hhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhh-ccHHHHHHHhcCHHHHhhH
Q 013867 307 LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKV-DRTDIVALARGGYAEALSV 385 (435)
Q Consensus 307 ~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l-~nla~~~~a~G~yaeal~~ 385 (435)
|++| ..+.+++.++..+|+.++| ..+|+||+... +..|+....+ ..........|+++++..+
T Consensus 422 ---p~~~---~~~~~~~~~~~~~g~~~~A------r~~~~~al~~~----~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~ 485 (530)
T 2ooe_A 422 ---GDIP---EYVLAYIDYLSHLNEDNNT------RVLFERVLTSG----SLPPEKSGEIWARFLAFESNIGDLASILKV 485 (530)
T ss_dssp ---TTCH---HHHHHHHHHHTTTTCHHHH------HHHHHHHHHSC----CSCGGGCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred ---CCCH---HHHHHHHHHHHhCCCHhhH------HHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4454 5678999999999998776 89999998864 3334322222 1223334455666655444
Q ss_pred h
Q 013867 386 Q 386 (435)
Q Consensus 386 ~ 386 (435)
.
T Consensus 486 ~ 486 (530)
T 2ooe_A 486 E 486 (530)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.5e-09 Score=85.74 Aligned_cols=125 Identities=11% Similarity=0.004 Sum_probs=97.1
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
...|..+..+..+|..+..+|+|++|++.|++++.+ .|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------------~~~~------------------ 45 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL----------------------NPAN------------------ 45 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------CTTC------------------
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc----------------------CCCC------------------
Confidence 445778899999999999999999999999887321 1110
Q ss_pred CchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 182 ENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
..+...+|.++..+|+|++|+.+|++++.+. . .
T Consensus 46 --------------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~------~ 78 (131)
T 2vyi_A 46 --------------------------------------AVYFCNRAAAYSKLGNYAGAVQDCERAICID---P------A 78 (131)
T ss_dssp --------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------T
T ss_pred --------------------------------------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---c------c
Confidence 0122335667788999999999999999871 1 1
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhh
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 332 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~ 332 (435)
....+.++|.+|..+|+|++|...|++++.+ .|+....+.+++.+|..+|++
T Consensus 79 -----------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 -----------YSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred -----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence 0145789999999999999999999999987 344556789999999999885
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.09 E-value=8.4e-09 Score=89.62 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=104.7
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCC
Q 013867 103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (435)
Q Consensus 103 ~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~ 182 (435)
+....+..+.++|..|..+|+|++|+..|++++.+...... ...+.+
T Consensus 6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~--------------~~~~~~------------------- 52 (162)
T 3rkv_A 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLIL--------------REKPGE------------------- 52 (162)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH--------------TSCTTS-------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc--------------cCCCCH-------------------
Confidence 44578899999999999999999999999999665322110 001110
Q ss_pred chhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCc
Q 013867 183 NYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL 262 (435)
Q Consensus 183 ~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l 262 (435)
+. +. .+ .|....+..++|.+|..+|+|++|+..|++||++ . + .
T Consensus 53 ------~~--~~--------~~-----------~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~---~-----p-~- 95 (162)
T 3rkv_A 53 ------PE--WV--------EL-----------DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR---E-----E-T- 95 (162)
T ss_dssp ------HH--HH--------HH-----------HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---S-----T-T-
T ss_pred ------HH--HH--------HH-----------HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---C-----C-c-
Confidence 00 00 00 1233456778899999999999999999999998 1 1 1
Q ss_pred ccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHH-HHHHHHHHHHHHhhhhhhh
Q 013867 263 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG-VVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 263 ~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va-~~L~nLA~ly~~qG~~e~A 335 (435)
...++.++|.+|..+|+|++|...|++|+.+ .|+-. .....|+.+.....++.+.
T Consensus 96 ----------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 96 ----------NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred ----------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1256889999999999999999999999998 45555 5567777777777666543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.3e-09 Score=106.45 Aligned_cols=183 Identities=13% Similarity=0.071 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcC--CCch
Q 013867 110 SLLAMSTLLYESG---NYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK--PENY 184 (435)
Q Consensus 110 ~l~nLa~ly~~qG---ky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~--~~~~ 184 (435)
.+++||.+|..+| ++++|++.|+++.+. |+.. +.. ..++..++.... +.++
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----------------------g~~~-a~~-~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSR----------------------GTVT-AQR-VDSVARVLGDATLGTPDE 233 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----------------------TCSC-HHH-HHHHHHHHTCGGGSSCCH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC----------------------CCHH-HHH-HHHHHHHHhCCCCCCCCH
Confidence 7888999999999 999999999887432 3322 111 112223332211 1123
Q ss_pred hchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHH-H--HHhhchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 185 KTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEY-L--HATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 185 ~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~-~--~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
++ ++..+.++ . .. ...+..++|.+ | ...|++++|..+|++|++. + .
T Consensus 234 ~~--A~~~~~~a-------a-~g-----------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-----g-----~ 282 (452)
T 3e4b_A 234 KT--AQALLEKI-------A-PG-----------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-----D-----Q 282 (452)
T ss_dssp HH--HHHHHHHH-------G-GG-----------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-----T-----C
T ss_pred HH--HHHHHHHH-------c-CC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-----C-----C
Confidence 32 22222222 1 11 23567788887 5 5799999999999999854 1 1
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHH----hhhh
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHMG-----NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KAMQ 332 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~qG-----~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~----qG~~ 332 (435)
..+.++||.+|. .| ++++|..+|++|. +.| ..+++|||.+|.. ..++
T Consensus 283 ------------~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--------~g~---~~A~~~Lg~~y~~G~g~~~d~ 338 (452)
T 3e4b_A 283 ------------PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--------GRE---VAADYYLGQIYRRGYLGKVYP 338 (452)
T ss_dssp ------------HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--------TTC---HHHHHHHHHHHHTTTTSSCCH
T ss_pred ------------HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--------CCC---HHHHHHHHHHHHCCCCCCcCH
Confidence 146789999998 77 9999999999987 344 4689999999987 2254
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHH----hcCHHHHhhHh
Q 013867 333 EHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA----RGGYAEALSVQ 386 (435)
Q Consensus 333 e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a----~G~yaeal~~~ 386 (435)
+ +|..+|++|.+ .++++ ...|++.+|.. ..++.+|..++
T Consensus 339 ~------~A~~~~~~Aa~------~g~~~---A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 339 Q------KALDHLLTAAR------NGQNS---ADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp H------HHHHHHHHHHT------TTCTT---HHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred H------HHHHHHHHHHh------hChHH---HHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 4 45888999876 23333 45678888763 33677777665
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.1e-09 Score=91.19 Aligned_cols=110 Identities=13% Similarity=0.027 Sum_probs=87.5
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC
Q 013867 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (435)
Q Consensus 102 ~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~ 181 (435)
.+.+..+..+.++|.+|..+|+|++|++.|++++.+ .|.
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------------~p~------------------- 43 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI----------------------APA------------------- 43 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------STT-------------------
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCc-------------------
Confidence 356788999999999999999999999999987332 111
Q ss_pred CchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCC
Q 013867 182 ENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 261 (435)
Q Consensus 182 ~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~ 261 (435)
...+..++|.+|..+|+|++|+..|++++++. + .
T Consensus 44 -------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p-~ 77 (164)
T 3sz7_A 44 -------------------------------------NPIYLSNRAAAYSASGQHEKAAEDAELATVVD--------P-K 77 (164)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T
T ss_pred -------------------------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------C-C
Confidence 01233456777889999999999999999991 1 1
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 013867 262 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 314 (435)
Q Consensus 262 l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~ 314 (435)
...++.+||.+|..+|+|++|...|++++.+. |+++.
T Consensus 78 -----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~ 114 (164)
T 3sz7_A 78 -----------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE-----GNGGS 114 (164)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----SSSCC
T ss_pred -----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCchH
Confidence 12467899999999999999999999999985 56665
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.07 E-value=5.2e-09 Score=83.97 Aligned_cols=118 Identities=21% Similarity=0.303 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhc
Q 013867 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT 186 (435)
Q Consensus 107 ~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~e 186 (435)
.+..+.++|.+|...|+|++|++.|++++.+ .+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------------~~~~----------------------- 42 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------------DPNN----------------------- 42 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------CTTC-----------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------------CcCc-----------------------
Confidence 4788999999999999999999998887321 1110
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q 013867 187 YGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN 266 (435)
Q Consensus 187 aeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~ 266 (435)
..+...++.++..+|+|++|+.+|++++.+. . .
T Consensus 43 ---------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~------~----- 75 (125)
T 1na0_A 43 ---------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---P------N----- 75 (125)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------T-----
T ss_pred ---------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---C------c-----
Confidence 0122335666788999999999999999871 1 1
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh
Q 013867 267 MALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA 330 (435)
Q Consensus 267 ~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG 330 (435)
....+.++|.+|..+|+|++|..+|++++.+ +|+....+.+++.++..+|
T Consensus 76 ------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 76 ------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred ------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 1135689999999999999999999999987 3555667889999888765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=91.58 Aligned_cols=96 Identities=19% Similarity=0.041 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
...+|..+..+|+|++|+..|++++++ . |+ ...++.+||.+|..+|++++|+..|++|++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----------~-------P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 79 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK-----------E-------PE--REEAWRSLGLTQAENEKDGLAIIALNHARM 79 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----------S-------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-----------C-------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456788889999999999999999998 1 11 124678999999999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+ .|++ ...+.+||.+|..+|++++| +..|++++++.
T Consensus 80 l-----~P~~---~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~ 115 (121)
T 1hxi_A 80 L-----DPKD---IAVHAALAVSHTNEHNANAA------LASLRAWLLSQ 115 (121)
T ss_dssp H-----CTTC---HHHHHHHHHHHHHHHHHHHH------HHHHHHHHC--
T ss_pred h-----CCCC---HHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 7 3444 45889999999999998776 89999998764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-09 Score=113.30 Aligned_cols=141 Identities=15% Similarity=0.036 Sum_probs=106.5
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccccc-ccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN-MALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~-~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
.......++|..|..+|+|++|+..|++|+++... .+.+.... ...+.....+++|+|.+|..+|+|++|+..
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM------EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc------cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34456677899999999999999999999998321 11110000 000111245778999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
|++||.+ +|+...++.++|.+|..+|+|++| ...|++|+++. |+......+++.++..+
T Consensus 340 ~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A------~~~~~~al~l~-------P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 340 CDKALGL--------DSANEKGLYRRGEAQLLMNEFESA------KGDFEKVLEVN-------PQNKAARLQISMCQKKA 398 (457)
T ss_dssp HHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTTC-----------CHHHHHHHHHHHH
T ss_pred HHHHHhc--------CCccHHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC-------CCCHHHHHHHHHHHHHH
Confidence 9999997 466678899999999999998876 89999999874 33345677899999999
Q ss_pred cCHHHHhhH
Q 013867 377 GGYAEALSV 385 (435)
Q Consensus 377 G~yaeal~~ 385 (435)
|+|.++...
T Consensus 399 ~~~~~a~~~ 407 (457)
T 1kt0_A 399 KEHNERDRR 407 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-09 Score=108.67 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.....+|..+..+|+|++|+..|++||++.............. ...|. ...+++|||.+|..+|+|++|+.+|++|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~--~~~~~--~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGA--KLQPV--ALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHG--GGHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHH--HHHHH--HHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3456678899999999999999999999854321000000000 00121 3357789999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHH
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYA 380 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ya 380 (435)
|++ +|+.+.++.++|.+|..+|++++| +..|++|+++. |++ .....+++.++..++++.
T Consensus 300 l~~--------~p~~~~a~~~lg~~~~~~g~~~eA------~~~l~~Al~l~----P~~---~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 300 LEI--------DPSNTKALYRRAQGWQGLKEYDQA------LADLKKAQEIA----PED---KAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HTT--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTC---HHHHHHHHHHHHHHHHHH
T ss_pred HHh--------CchhHHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC----CCC---HHHHHHHHHHHHHHHHHH
Confidence 985 567788899999999999998876 89999999985 223 335566777777777777
Q ss_pred HHhh
Q 013867 381 EALS 384 (435)
Q Consensus 381 eal~ 384 (435)
++..
T Consensus 359 ~a~k 362 (370)
T 1ihg_A 359 DKEK 362 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-08 Score=105.55 Aligned_cols=193 Identities=11% Similarity=0.085 Sum_probs=130.5
Q ss_pred hhcHH-------HHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 013867 79 DESYS-------QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEA 151 (435)
Q Consensus 79 ~G~Y~-------eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~ 151 (435)
.|+++ +|+.+|+++++.. .|.-.....+++.++..+|++++|+.+|++++.+.....
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~-------~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--------- 355 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTL-------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--------- 355 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTT-------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH---------
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc---------
Confidence 47776 9999999999621 255677889999999999999999999999966432210
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHH-H
Q 013867 152 LAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEY-L 230 (435)
Q Consensus 152 L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~-~ 230 (435)
+ ......+.+....+ .+++|..+ +.+|+. .. |+...+....+.+ +
T Consensus 356 -------------~-~~~~~~~~~~~~~~--~~~~A~~~--~~~Al~--------~~--------~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 356 -------------T-LVYIQYMKFARRAE--GIKSGRMI--FKKARE--------DA--------RTRHHVYVTAALMEY 401 (530)
T ss_dssp -------------H-HHHHHHHHHHHHHH--HHHHHHHH--HHHHHT--------CT--------TCCTHHHHHHHHHHH
T ss_pred -------------h-HHHHHHHHHHHHhc--CHHHHHHH--HHHHHh--------cc--------CCchHHHHHHHHHHH
Confidence 1 11122222222222 13333332 222222 11 1122233333333 4
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013867 231 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 310 (435)
Q Consensus 231 ~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~ 310 (435)
..+|++++|..+|+++|++. |+. .....+++.++..+|++++|..+|++|+.. ++
T Consensus 402 ~~~~~~~~A~~~~e~al~~~------------------p~~--~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~-----~~ 456 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKY------------------GDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTS-----GS 456 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHH------------------TTC--HHHHHHHHHHHTTTTCHHHHHHHHHHHHHS-----CC
T ss_pred HHcCChhHHHHHHHHHHHHC------------------CCC--HHHHHHHHHHHHhCCCHhhHHHHHHHHHhc-----cC
Confidence 57999999999999999882 111 134678999999999999999999999875 56
Q ss_pred CChh-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 311 HHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 311 ~HP~-va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.+|+ ....+..........|+.+.+ ..+++|+++..
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~------~~~~~r~~~~~ 493 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASI------LKVEKRRFTAF 493 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHH------HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence 7785 445666778888888997766 88999999988
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-09 Score=89.53 Aligned_cols=105 Identities=10% Similarity=0.018 Sum_probs=86.8
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
+........+|..+..+|+|++|+.+|++++++. + . +......+.++|.+|..+|+|++|+..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------~-~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~ 87 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--------A-T--------PQDQAVLHRNRAACHLKLEDYDKAETE 87 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--------C-C--------HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--------c-c--------chHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 4455677778999999999999999999999761 0 0 001234678999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|++++.+ +|+....+.++|.+|..+|++++| ...|++++++.
T Consensus 88 ~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~al~~~ 129 (148)
T 2dba_A 88 ASKAIEK--------DGGDVKALYRRSQALEKLGRLDQA------VLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHH--------TSCCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHC
T ss_pred HHHHHhh--------CccCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHcC
Confidence 9999987 455577899999999999998776 89999999875
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.03 E-value=3e-09 Score=102.29 Aligned_cols=195 Identities=9% Similarity=0.039 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~ 140 (435)
.+..+.++|..+. ..|+|++|+..|++++... |..+..++++|.+|..+|+|++|+..|++++.+...
T Consensus 3 ~a~~~~~~g~~~~----~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 70 (281)
T 2c2l_A 3 SAQELKEQGNRLF----VGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70 (281)
T ss_dssp CHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred hHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4567788888874 3689999999999999763 556789999999999999999999999999877654
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchh-chhhHHHHHHHHHHHHHHhcCCCcccccccccch
Q 013867 141 ILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYK-TYGAVNSRANAVKGLVELAHGNLESGLQEEEGCT 219 (435)
Q Consensus 141 ~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~-eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~ 219 (435)
. ..++.+++..+..+|.+..|......++.+.-.... .+. .........+..... ....... +..
T Consensus 71 ~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~ 136 (281)
T 2c2l_A 71 S----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL-NFGDDIPSALRIAKKKRWN-SIEERRI--------HQE 136 (281)
T ss_dssp C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CCCSHHHHHHHHHHHHHHH-HHHHTCC--------CCC
T ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh-hHHHHHHHHHHHHHHHHHH-HHHHHHH--------hhh
Confidence 3 335667888899999999999888888877654321 111 111111122111110 0011111 112
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Q 013867 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM-GNFGDAEEILT 298 (435)
Q Consensus 220 ~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q-G~y~eAe~l~~ 298 (435)
..+...++.++ +|++++|...|++|++. . |+. ......++.++... ++|++|+.+|.
T Consensus 137 ~~i~~~l~~l~--~~~~~~A~~~~~~al~~-----------~-------p~~--~~~~~~l~~~~~~~~~~~~~a~~~f~ 194 (281)
T 2c2l_A 137 SELHSYLTRLI--AAERERELEECQRNHEG-----------H-------EDD--GHIRAQQACIEAKHDKYMADMDELFS 194 (281)
T ss_dssp CHHHHHHHHHH--HHHHHHHHTTTSGGGTT-----------T-------SCH--HHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhhhcc-----------c-------cch--hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 23444455554 79999999999988866 1 111 12234566666665 88999999999
Q ss_pred HHHHH
Q 013867 299 RTLTK 303 (435)
Q Consensus 299 rAL~I 303 (435)
++.+.
T Consensus 195 ~a~~~ 199 (281)
T 2c2l_A 195 QVDEK 199 (281)
T ss_dssp HSSCT
T ss_pred hhhcc
Confidence 98764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.02 E-value=7.8e-10 Score=91.53 Aligned_cols=90 Identities=17% Similarity=0.211 Sum_probs=71.7
Q ss_pred HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 232 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 232 ~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
.+|+|++|+++|++++++ ... .|+ ...++.+||.+|..+|+|++|+..|++++.+
T Consensus 2 ~~g~~~~A~~~~~~al~~---~~~------------~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------- 56 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS---GLQ------------GKD--LAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-------- 56 (117)
T ss_dssp -----CCCHHHHHHHHSS---CCC------------HHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred CCCcHHHHHHHHHHHHHc---CCC------------Ccc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 479999999999999976 100 022 2357889999999999999999999999987
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 312 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 312 HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+|+...++.++|.+|..+|++++| +..|++++++.
T Consensus 57 ~p~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~ 91 (117)
T 3k9i_A 57 FPNHQALRVFYAMVLYNLGRYEQG------VELLLKIIAET 91 (117)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 455577899999999999998776 89999999986
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=3.5e-09 Score=84.35 Aligned_cols=98 Identities=16% Similarity=0.068 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.....+|..+..+|+|++|+.+|++++.+. + . ....+.++|.+|..+|+|++|...|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~-~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 64 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--------P-H-----------NHVLYSNRSAAYAKKGDYQKAYEDGCKT 64 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------C-C-----------cHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 455667888999999999999999999881 1 1 1135789999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.+ +|+....+.++|.+|..+|++++| ...|++++++.
T Consensus 65 ~~~--------~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~~~~~~ 102 (118)
T 1elw_A 65 VDL--------KPDWGKGYSRKAAALEFLNRFEEA------KRTYEEGLKHE 102 (118)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTTC
T ss_pred HHh--------CcccHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHcC
Confidence 987 355567899999999999998776 88899988753
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.1e-10 Score=97.12 Aligned_cols=94 Identities=14% Similarity=0.026 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 274 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 274 l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
...+.++|.+|..+|+|++|+.+|++++.+ .|+-...+.++|.+|..+|++++| +..|++++++.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~l~- 85 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLA------IHSYSYGAVMD- 85 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHH------HHHHHHHHhcC-
Confidence 357889999999999999999999999986 455567789999999999998876 89999999985
Q ss_pred CCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 354 APPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 354 ~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
|++| ..+.+++.++..+|++++|+..+.+
T Consensus 86 ---p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 86 ---IXEP---RFPFHAAECLLQXGELAEAESGLFL 114 (148)
T ss_dssp ---TTCT---HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---CCCc---hHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444 4667899999999999999887744
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.6e-10 Score=87.36 Aligned_cols=99 Identities=12% Similarity=0.011 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 220 ~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~r 299 (435)
..+...+|.++..+|+|++|+.+|++++++. . . ....+.++|.+|..+|+|++|..+|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~------~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~ 65 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD---P------E-----------ESKYWLMKGKALYNLERYEEAVDCYNY 65 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC---C------C-----------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---c------C-----------CHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3455667889999999999999999999881 1 1 113578999999999999999999999
Q ss_pred HHHHHHHhhCCCChh--HHHHHHHHHHHHHHh-hhhhhhhhhHHHHHHHHHHHHHh
Q 013867 300 TLTKTEELFGSHHPK--VGVVLTCLALMFRNK-AMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 300 AL~I~e~~lG~~HP~--va~~L~nLA~ly~~q-G~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++.+ .|+ ...++.++|.+|..+ |++++| +..+++++...
T Consensus 66 a~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~A------~~~~~~~~~~~ 107 (112)
T 2kck_A 66 VINV--------IEDEYNKDVWAAKADALRYIEGKEVEA------EIAEARAKLEH 107 (112)
T ss_dssp HHHT--------SCCTTCHHHHHHHHHHHTTCSSCSHHH------HHHHHHHGGGC
T ss_pred HHHh--------CcccchHHHHHHHHHHHHHHhCCHHHH------HHHHHHHhhcc
Confidence 9986 344 567899999999999 998776 78888887654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-09 Score=93.11 Aligned_cols=116 Identities=14% Similarity=0.124 Sum_probs=90.7
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013867 231 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 310 (435)
Q Consensus 231 ~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~ 310 (435)
..+|+|++|+.+|++++++ . + . ....+.++|.+|..+|+|++|+.+|++++.+. |
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~-----p-~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p 75 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---N-----P-Q-----------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----G 75 (177)
T ss_dssp C-----CCCCHHHHHHHHH---C-----C-S-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----C
T ss_pred hhccCHHHHHHHHHHHHHh---C-----C-C-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----C
Confidence 4579999999999999988 1 1 1 11457899999999999999999999999874 3
Q ss_pred CChhHHHHHHHHHHH-HHHhhhh--hhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 311 HHPKVGVVLTCLALM-FRNKAMQ--EHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 311 ~HP~va~~L~nLA~l-y~~qG~~--e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
+ ....+.++|.+ |..+|++ ++| +..|++++++. |+....+.+++.++..+|+|++|+..+.
T Consensus 76 ~---~~~~~~~la~~l~~~~~~~~~~~A------~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~ 139 (177)
T 2e2e_A 76 E---NAELYAALATVLYYQASQHMTAQT------RAMIDKALALD-------SNEITALMLLASDAFMQANYAQAIELWQ 139 (177)
T ss_dssp S---CHHHHHHHHHHHHHHTTTCCCHHH------HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHHhcCCcchHHH------HHHHHHHHHhC-------CCcHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3 45678999999 8899997 766 89999999984 3334567789999999999999988763
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.95 E-value=6.2e-09 Score=100.05 Aligned_cols=99 Identities=13% Similarity=-0.021 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 220 ~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~r 299 (435)
......+|..+..+|+|++|+.+|++|+++. + . ....+.++|.+|..+|+|++|+..|++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~ 63 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--------P-L-----------VAVYYTNRALCYLKMQQPEQALADCRR 63 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------S-C-----------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C-c-----------cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3456678889999999999999999999981 1 1 124678999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 300 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 300 AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|+.+ +|+....++++|.+|..+|++++| +..|++++++.
T Consensus 64 al~~--------~p~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~l~ 102 (281)
T 2c2l_A 64 ALEL--------DGQSVKAHFFLGQCQLEMESYDEA------IANLQRAYSLA 102 (281)
T ss_dssp HTTS--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 9986 677778999999999999998776 89999999987
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-08 Score=89.46 Aligned_cols=101 Identities=12% Similarity=0.112 Sum_probs=84.9
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHH-HHHcCCH--HHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQL-EAHMGNF--GDAE 294 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~l-y~~qG~y--~eAe 294 (435)
....+...+|.+|..+|+|++|+.+|++++++. . . ....+.++|.+ |..+|+| ++|+
T Consensus 42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p------~-----------~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR---G------E-----------NAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---C------S-----------CHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---C------C-----------CHHHHHHHHHHHHHhcCCcchHHHH
Confidence 345677788999999999999999999999982 1 0 01356799999 8899999 9999
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 295 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 295 ~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.+|++++.+ +|+-..++.++|.+|..+|++++| ...|++++++.
T Consensus 102 ~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~ 145 (177)
T 2e2e_A 102 AMIDKALAL--------DSNEITALMLLASDAFMQANYAQA------IELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHTC
T ss_pred HHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHH------HHHHHHHHhhC
Confidence 999999987 455567899999999999998776 89999999875
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-09 Score=95.74 Aligned_cols=107 Identities=12% Similarity=0.040 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC----CCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG----SHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG----~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
.+.++|..+..+|+|++|+..|++||.+.-..-. ...|.-+.+++|+|.++...|+|++| +..|.+||+|
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eA------l~~~~kAL~l 86 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEA------LHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHh
Confidence 5679999999999999999999999998654110 01133566999999999999998876 8999999999
Q ss_pred hcCCCCCCCchhhhh----ccHHHHHHHhcCHHHHhhHhhh
Q 013867 352 LKAPPLESEGVETKV----DRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 352 ~k~~~~~hp~~a~~l----~nla~~~~a~G~yaeal~~~~~ 388 (435)
+..-+.-.|+.+..+ +|++.++...|+|+||+..+.+
T Consensus 87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 733345556767777 9999999999999999887743
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=82.97 Aligned_cols=99 Identities=14% Similarity=0.128 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
.++.++|.+|..+|+|++|..+|++++.+ .|+...++.++|.+|..+|++++| ...|++++++...
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~~~ 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKC------RELCEKAIEVGRE 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHH------HHHHHHHHhhccc
Confidence 46789999999999999999999999987 355567899999999999998876 8999999999854
Q ss_pred CCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 355 PPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
.+.+++.....+.+++.++...|+|++|...+.
T Consensus 71 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 103 (131)
T 1elr_A 71 NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYN 103 (131)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 344444457788899999999999999988763
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-08 Score=92.82 Aligned_cols=140 Identities=12% Similarity=0.023 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC----CHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG----NFGDAEEI 296 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG----~y~eAe~l 296 (435)
.+..++|.+|..+|++++|+.+|++|++. + + ..++++||.+|.. | ++++|..+
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----g---~--------------~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----G---D--------------GDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T---C--------------HHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----C---C--------------HHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 46667777787888888888888887643 1 0 1356778888877 6 78888888
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHH----hhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCC-chhhhhccHHH
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRRALEFLKAPPLESE-GVETKVDRTDI 371 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~----qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp-~~a~~l~nla~ 371 (435)
|++|.. +.| ..++++||.+|.. .+++++| ..+|++|+++- ++ +......|++.
T Consensus 76 ~~~A~~-------~g~---~~a~~~Lg~~y~~g~g~~~d~~~A------~~~~~~A~~~~------~~~~~~~a~~~Lg~ 133 (212)
T 3rjv_A 76 AEKAVE-------AGS---KSGEIVLARVLVNRQAGATDVAHA------ITLLQDAARDS------ESDAAVDAQMLLGL 133 (212)
T ss_dssp HHHHHH-------TTC---HHHHHHHHHHHTCGGGSSCCHHHH------HHHHHHHTSST------TSHHHHHHHHHHHH
T ss_pred HHHHHH-------CCC---HHHHHHHHHHHHcCCCCccCHHHH------HHHHHHHHHcC------CCcchHHHHHHHHH
Confidence 888754 123 4567788888876 5555444 67777776532 11 23456677788
Q ss_pred HHHH----hcCHHHHhhHhhhhhh---HHHHHHHHHHHHhc
Q 013867 372 VALA----RGGYAEALSVQQNRKD---EGERMKRWAEAAWR 405 (435)
Q Consensus 372 ~~~a----~G~yaeal~~~~~r~~---eae~~~~~a~~~~~ 405 (435)
+|.. .+++.+|+..+.+-.+ ..+.+...+..++.
T Consensus 134 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 134 IYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp HHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 8777 6677777776644322 23455556665553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-07 Score=109.80 Aligned_cols=252 Identities=14% Similarity=0.089 Sum_probs=144.6
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHH------------------------HHHHHHHHcCCHHHHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLL------------------------AMSTLLYESGNYVEAIEKLQKV 134 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~------------------------nLa~ly~~qGky~eA~~l~~ra 134 (435)
.|.|.+|+++||+++ .....+ .+|+..-..+. .+|.++.+.|.|+||..+|+++
T Consensus 998 aglp~EaieLLEKiv-l~~s~f-s~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa 1075 (1630)
T 1xi4_A 998 ADLPNELIELLEKIV-LDNSVF-SEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKF 1075 (1630)
T ss_pred CCCHHHHHHHHHHHH-cCCCcc-cccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 579999999999999 322212 24555444321 1488999999999999999997
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccc
Q 013867 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQE 214 (435)
Q Consensus 135 l~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~ 214 (435)
. .......+- +..++..+.|..+++++ . +.+.++..+++. .-.|++++|...
T Consensus 1076 ~-~~~~A~~VL----------ie~i~nldrAiE~Aerv-------n-----~p~vWsqLAKAq-----l~~G~~kEAIds 1127 (1630)
T 1xi4_A 1076 D-VNTSAVQVL----------IEHIGNLDRAYEFAERC-------N-----EPAVWSQLAKAQ-----LQKGMVKEAIDS 1127 (1630)
T ss_pred C-CHHHHHHHH----------HHHHhhHHHHHHHHHhc-------C-----CHHHHHHHHHHH-----HhCCCHHHHHHH
Confidence 3 111111111 11233344443333321 1 011222222211 122333332211
Q ss_pred c-ccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh-----ccc-----CCCCCcccccccchHHHHHHHHHHHHH
Q 013867 215 E-EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQ-----KDF-----SDMNTLGSCNMALEEVALAATFALGQL 283 (435)
Q Consensus 215 ~-~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~-----~~~-----~~~~~l~~~~~~~~~~~l~~l~nLa~l 283 (435)
+ ...........+.++...|+|++|.++|++|..+..+. +++ .....+. ... ..+....+.++|..
T Consensus 1128 YiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele-~fI--~~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1128 YIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELE-EFI--NGPNNAHIQQVGDR 1204 (1630)
T ss_pred HHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHH-HHH--hCCCHHHHHHHHHH
Confidence 1 11223455667889999999999999999988663100 000 0000000 000 00112346689999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh--cC-------
Q 013867 284 EAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL--KA------- 354 (435)
Q Consensus 284 y~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~--k~------- 354 (435)
+..+|+|++|..+|.+| ..+..+|..|...|++++| ...|++|.... +.
T Consensus 1205 le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~A------IEaarKA~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAA------VDGARKANSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHH------HHHHHHhCCHHHHHHHHHHHhh
Confidence 99999999999999995 4788899999999998776 66676664432 10
Q ss_pred ---------CC---CCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 355 ---------PP---LESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 355 ---------~~---~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
.| ..||+ .+..+...|..+|+|+||+.+.++
T Consensus 1263 ~~Ef~LA~~cgl~Iiv~~d---eLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHIVVHAD---ELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred hhHHHHHHHHHHhhhcCHH---HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 01 12343 334556678888999988888743
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.2e-08 Score=95.69 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+.+.|+.+|..+|+|++|..+|++.+.. + |+++ ...++|.++...|+|++|+.+|+++
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~-------------~-----p~~~---~~~~~a~l~~~~~r~~dA~~~l~~a 161 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVA-------------G-----SEHL---VAWMKAVVYGAAERWTDVIDQVKSA 161 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCT-------------T-----CHHH---HHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------------C-----CchH---HHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 45667889999999999999999877643 1 3332 5688999999999999999999866
Q ss_pred HHHHHHhhCCCChhH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCc-hhhhhccHHHHHHHhcC
Q 013867 301 LTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEG-VETKVDRTDIVALARGG 378 (435)
Q Consensus 301 L~I~e~~lG~~HP~v-a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~-~a~~l~nla~~~~a~G~ 378 (435)
+.. .||.. ..+..+||.++...|++++| +..|++++. ++..|. ......+++.++..+|+
T Consensus 162 ~~~-------~d~~~~~~a~~~LG~al~~LG~~~eA------l~~l~~a~~-----g~~~P~~~~da~~~~glaL~~lGr 223 (282)
T 4f3v_A 162 GKW-------PDKFLAGAAGVAHGVAAANLALFTEA------ERRLTEAND-----SPAGEACARAIAWYLAMARRSQGN 223 (282)
T ss_dssp GGC-------SCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHT-----STTTTTTHHHHHHHHHHHHHHHTC
T ss_pred hcc-------CCcccHHHHHHHHHHHHHHCCCHHHH------HHHHHHHhc-----CCCCccccHHHHHHHHHHHHHcCC
Confidence 433 37765 55899999999999998776 899999873 333254 44566789999999888
Q ss_pred HHHHhhHhhhhhhHHHHHHHHHHHHhcccchhHHHHhcc
Q 013867 379 YAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLAEALNF 417 (435)
Q Consensus 379 yaeal~~~~~r~~eae~~~~~a~~~~~~~r~~l~~~l~~ 417 (435)
.+||...+ +++.....+ ....++|..
T Consensus 224 ~deA~~~l-----------~~a~a~~P~--~~~~~aL~~ 249 (282)
T 4f3v_A 224 ESAAVALL-----------EWLQTTHPE--PKVAAALKD 249 (282)
T ss_dssp HHHHHHHH-----------HHHHHHSCC--HHHHHHHHC
T ss_pred HHHHHHHH-----------HHHHhcCCc--HHHHHHHhC
Confidence 87665544 445555555 455666653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.87 E-value=3e-08 Score=99.89 Aligned_cols=141 Identities=14% Similarity=0.074 Sum_probs=105.6
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch
Q 013867 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (435)
Q Consensus 105 p~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~ 184 (435)
...+..+.++|..|..+|+|++|+..|++++.+.+... .... .
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~----------------------------------~~~~---~ 262 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR----------------------------------AAAE---D 262 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH----------------------------------HHSC---H
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc----------------------------------cccC---h
Confidence 45677899999999999999999999999965432210 0000 0
Q ss_pred hchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 013867 185 KTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS 264 (435)
Q Consensus 185 ~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~ 264 (435)
.+... .++....+..++|.+|..+|+|++|+.+|++||++. + .
T Consensus 263 ~~~~~-------------------------~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p-~--- 305 (370)
T 1ihg_A 263 ADGAK-------------------------LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID--------P-S--- 305 (370)
T ss_dssp HHHGG-------------------------GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------T-T---
T ss_pred HHHHH-------------------------HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--------c-h---
Confidence 00000 012233566778999999999999999999999871 1 1
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013867 265 CNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 265 ~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A 335 (435)
...++.++|.+|..+|+|++|+..|++|+++ .|+-.....+|+.++..+++++++
T Consensus 306 --------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 306 --------NTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1246889999999999999999999999987 344556788999999999998766
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-08 Score=82.15 Aligned_cols=97 Identities=12% Similarity=0.108 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
++.++|..+..+|+|++|..+|++++.+ .|++|....++.++|.+|..+|++++| ...|++++.+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A------~~~~~~~~~~~--- 69 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLA------EAQFRDLVSRY--- 69 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHH------HHHHHHHHHHC---
Confidence 3578999999999999999999999876 588999999999999999999998876 89999999875
Q ss_pred CCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 356 PLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
|+++.+...+.+++.++..+|+|++|+..+.
T Consensus 70 -p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 100 (129)
T 2xev_A 70 -PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQ 100 (129)
T ss_dssp -TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -CCCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666566778899999999999999988763
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-07 Score=109.25 Aligned_cols=249 Identities=14% Similarity=0.103 Sum_probs=144.4
Q ss_pred ChhcHHHHHHHHHHHHhccCc------CCC--------CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPS------DGQ--------LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG 143 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~------~lG--------~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~ 143 (435)
+.|.|+||..+|+++-..... ..| .+....-.+++++|..+.++|+|.+|+..|.+|-+.
T Consensus 1061 ~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~------ 1134 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP------ 1134 (1630)
T ss_pred hCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCCh------
Confidence 356777887777776322111 001 112334566778999999999999999999887221
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHH--HHHHHHHhcCCCcccccccccchhH
Q 013867 144 VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANA--VKGLVELAHGNLESGLQEEEGCTGS 221 (435)
Q Consensus 144 i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~A--i~~~~~~lgg~h~~a~~~~~~~~~~ 221 (435)
..+.+++-.+.+.|.+..+..++..+.... +..+-+.+-.+.+++- +..+...+. .++. .
T Consensus 1135 ---say~eVa~~~~~lGkyEEAIeyL~mArk~~----~e~~Idt~LafaYAKl~rleele~fI~----------~~n~-a 1196 (1630)
T 1xi4_A 1135 ---SSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVETELIFALAKTNRLAELEEFIN----------GPNN-A 1196 (1630)
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----ccccccHHHHHHHHhhcCHHHHHHHHh----------CCCH-H
Confidence 122334445556677766655544322211 1000001111111110 000000111 1222 3
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
...++|..+...|+|++|..+|.+|- ....||.+|.++|+|++|.+.+++|.
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA~----------------------------ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNVS----------------------------NFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhh----------------------------HHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 44568999999999999999999961 13578999999999999999999996
Q ss_pred HHHH-----------------HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhh
Q 013867 302 TKTE-----------------ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVET 364 (435)
Q Consensus 302 ~I~e-----------------~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~ 364 (435)
...- ...|-+...-+..+..++..|..+|.|++| ..+++++|.+- +.|.+
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEA------I~LlE~aL~Le----raH~g--- 1315 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEEL------ITMLEAALGLE----RAHMG--- 1315 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHH------HHHHHHHhccC----hhHhH---
Confidence 6532 112322222233455888889999997766 78888887553 22333
Q ss_pred hhccHHHHHH--HhcCHHHHhhHhhhhhh
Q 013867 365 KVDRTDIVAL--ARGGYAEALSVQQNRKD 391 (435)
Q Consensus 365 ~l~nla~~~~--a~G~yaeal~~~~~r~~ 391 (435)
+...++++|. .-++.-|.+..+..|..
T Consensus 1316 mftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1316 MFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 3334455544 44566777777655544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.85 E-value=7.8e-09 Score=102.34 Aligned_cols=153 Identities=12% Similarity=0.137 Sum_probs=85.7
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCch
Q 013867 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (435)
Q Consensus 105 p~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~ 184 (435)
+..+..+.++|..|..+|+|++|+..|++++.+..... .+. ....+
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------------------------------~~~--~~~~~ 221 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------------------------------MFQ--LYGKY 221 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------------------------------HHT--CCHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------------------------------hhh--hcccH
Confidence 45788899999999999999999999999865432210 000 00001
Q ss_pred hchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 013867 185 KTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS 264 (435)
Q Consensus 185 ~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~ 264 (435)
. .++.. + ...+.+++|.+|..+|+|++|+..|++||++. + .
T Consensus 222 ~---------~~~~~----l--------------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p-~--- 262 (338)
T 2if4_A 222 Q---------DMALA----V--------------KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE--------E-K--- 262 (338)
T ss_dssp H---------HHHHH----H--------------HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC--------T-T---
T ss_pred H---------HHHHH----H--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C-C---
Confidence 1 01110 0 01245678999999999999999999999981 1 1
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh-hhhhhhhhHHHHH
Q 013867 265 CNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA-MQEHSSALLIQEG 343 (435)
Q Consensus 265 ~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG-~~e~A~~~~~Ae~ 343 (435)
...+++++|.+|..+|+|++|+..|++|+.+. |+-..++.+|+.+...+. ..++ +..
T Consensus 263 --------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a~~~L~~l~~~~~~~~~~------a~~ 320 (338)
T 2if4_A 263 --------NPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAIRRELRALAEQEKALYQK------QKE 320 (338)
T ss_dssp --------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHH------HHH
Confidence 12568999999999999999999999999874 444566778888855443 3333 467
Q ss_pred HHHHHHHHh
Q 013867 344 LYRRALEFL 352 (435)
Q Consensus 344 Ly~rAL~I~ 352 (435)
+|++++...
T Consensus 321 ~~~~~l~~~ 329 (338)
T 2if4_A 321 MYKGIFKGK 329 (338)
T ss_dssp ---------
T ss_pred HHHHhhCCC
Confidence 888877654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.3e-08 Score=85.34 Aligned_cols=94 Identities=16% Similarity=0.073 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 274 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 274 l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
...+.++|..+..+|+|++|+.+|++++.+ +|+-...+.++|.+|..+|++++| +..|++++++.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~- 82 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQA------LQSYSYGALMD- 82 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHH------HHHHHHHHhcC-
Confidence 357789999999999999999999999975 455567789999999999998876 89999999985
Q ss_pred CCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 354 APPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 354 ~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
|++|. ...+++.++..+|+|++|+..+.+
T Consensus 83 ---p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 83 ---INEPR---FPFHAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp ---TTCTH---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---CCCcH---HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44443 567899999999999999887643
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.6e-08 Score=75.99 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 219 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 219 ~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
...+...+|.++..+|+|++|+.+|++++++. . . ....+.++|.+|..+|+|++|...|+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~------~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---P------N-----------NAEAWYNLGNAYYKQGDYDEAIEYYQ 67 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T------T-----------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---C------C-----------CHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44566778999999999999999999999881 1 1 11457899999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKA 330 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG 330 (435)
+++.+ +|+...++.++|.+|..+|
T Consensus 68 ~a~~~--------~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 68 KALEL--------DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred HHHhc--------CCCCHHHHHHHHHHHHhcC
Confidence 99987 4555678899999998765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.3e-08 Score=82.09 Aligned_cols=91 Identities=22% Similarity=0.146 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
..+.++|..|..+|+|++|+..|++++.+ +|+....+.++|.+|..+|++++| +..|++++++.
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~al~~~-- 73 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQA------LADCRRALELD-- 73 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHhC--
Confidence 56789999999999999999999999997 455677999999999999998776 89999999985
Q ss_pred CCCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 355 PPLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
|+....+.+++.++..+|+|++|+..+
T Consensus 74 -----p~~~~~~~~l~~~~~~~~~~~~A~~~~ 100 (137)
T 3q49_B 74 -----GQSVKAHFFLGQCQLEMESYDEAIANL 100 (137)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----chhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344557789999999999999998766
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.79 E-value=8.1e-09 Score=102.22 Aligned_cols=116 Identities=12% Similarity=0.084 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013867 220 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR 299 (435)
Q Consensus 220 ~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~r 299 (435)
......+|..+..+|+|++|+.+|++|+.+...... ....+...-....+...+++|||.+|..+|+|++|...|++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~---~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM---FQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH---HTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh---hhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344566788889999999999999999998311000 00000000000011113678999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 300 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 300 AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
||.+ +|+-..++.++|.+|..+|++++| +..|++++++.
T Consensus 256 al~~--------~p~~~~a~~~lg~a~~~~g~~~~A------~~~l~~al~l~ 294 (338)
T 2if4_A 256 VLTE--------EEKNPKALFRRGKAKAELGQMDSA------RDDFRKAQKYA 294 (338)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHTTTCHHHH------HHHHHHTTC--
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence 9986 466678899999999999998776 88999998775
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.6e-08 Score=79.53 Aligned_cols=90 Identities=12% Similarity=0.046 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
.+..++|.++..+|+|++|+.+|++++++. + . ....+.++|.+|..+|+|++|+..|+++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ--------P-Q-----------NPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------C-C-----------CHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 455678889999999999999999999981 1 1 1145789999999999999999999999
Q ss_pred HHHHHHhhCCCChh---HHHHHHHHHHHHHHhhhhhhh
Q 013867 301 LTKTEELFGSHHPK---VGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 301 L~I~e~~lG~~HP~---va~~L~nLA~ly~~qG~~e~A 335 (435)
+.+ .|++++ ...++.++|.+|..+|++++|
T Consensus 65 l~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 65 LRY-----TSTAEHVAIRSKLQYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HTS-----CSSTTSHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHh-----CCCccHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 975 344422 377899999999999987765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=4e-08 Score=82.54 Aligned_cols=91 Identities=11% Similarity=0.017 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
...++|..+..+|+|++|+..|++++.+ .|+-+..+.+||.+|..+|++++| +..|++|+++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A------~~~~~~al~l~--- 81 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLA------IIALNHARMLD--- 81 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC---
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC---
Confidence 3578999999999999999999999986 566678899999999999998776 89999999985
Q ss_pred CCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 356 PLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
|++ ...+.+++.++..+|+|++|+..+.
T Consensus 82 -P~~---~~~~~~la~~~~~~g~~~~A~~~~~ 109 (121)
T 1hxi_A 82 -PKD---IAVHAALAVSHTNEHNANAALASLR 109 (121)
T ss_dssp -TTC---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333 3466789999999999999988764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-08 Score=81.79 Aligned_cols=95 Identities=13% Similarity=0.095 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 274 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 274 l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
...+.++|.+|..+|+|++|...|++++.+ +|+...++.|+|.+|..+|++++| +..|++++++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~- 68 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQA------IQMCQQGLRYT- 68 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTSC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHhC-
Confidence 356789999999999999999999999987 455567899999999999998776 89999999875
Q ss_pred CCCCCCCc---hhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 354 APPLESEG---VETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 354 ~~~~~hp~---~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
|++++ ....+.+++.++...|++.+++...
T Consensus 69 ---p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 69 ---STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp ---SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred ---CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 23322 2556678888888888877766543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-07 Score=75.07 Aligned_cols=93 Identities=12% Similarity=0.098 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 274 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 274 l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
+..+.++|..+..+|+|++|..+|++++.+ .|.....+.++|.+|..+|++++| ...|++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~~~~~~- 68 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKA------YEDGCKTVDLK- 68 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHH------HHHHHHHHHhC-
Confidence 356789999999999999999999999986 244456899999999999998776 89999999874
Q ss_pred CCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 354 APPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 354 ~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
|+....+.+++.++..+|+|++|.....
T Consensus 69 ------~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 96 (118)
T 1elw_A 69 ------PDWGKGYSRKAAALEFLNRFEEAKRTYE 96 (118)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------cccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3334567789999999999999988763
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=9.2e-08 Score=79.69 Aligned_cols=96 Identities=17% Similarity=0.063 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 274 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 274 l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
...+..+|..+..+|+|++|.++|++++.+ .++++.....+.++|.+|..+|++++| +..|++++++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~~~~~~- 95 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKA------ETEASKAIEKD- 95 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHH------HHHHHHHHhhC-
Confidence 356789999999999999999999999975 567777899999999999999998776 89999999884
Q ss_pred CCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 354 APPLESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 354 ~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
|+....+.+++.++..+|+|++|+..+.
T Consensus 96 ------~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 123 (148)
T 2dba_A 96 ------GGDVKALYRRSQALEKLGRLDQAVLDLQ 123 (148)
T ss_dssp ------SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ------ccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3335567789999999999999887763
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-08 Score=82.93 Aligned_cols=85 Identities=12% Similarity=0.141 Sum_probs=69.5
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhh
Q 013867 286 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETK 365 (435)
Q Consensus 286 ~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~ 365 (435)
.+|+|++|+++|++|+++ ++++|+...++.+||.+|..+|+|++| +..|++++++. |+....
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A------~~~~~~al~~~-------p~~~~~ 63 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKA------EAVLANGVKQF-------PNHQAL 63 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------TTCHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC-------CCchHH
Confidence 479999999999999984 466899999999999999999998876 89999999985 333456
Q ss_pred hccHHHHHHHhcCHHHHhhHhhh
Q 013867 366 VDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 366 l~nla~~~~a~G~yaeal~~~~~ 388 (435)
+.+++.++..+|+|++|+....+
T Consensus 64 ~~~l~~~~~~~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 64 RVFYAMVLYNLGRYEQGVELLLK 86 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 77899999999999999887644
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.2e-08 Score=77.40 Aligned_cols=92 Identities=13% Similarity=0.121 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
.+.++|.+|..+|+|++|..+|++++.+ .|....++.++|.+|..+|++++| ...|++++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~a~~~~--- 70 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEA------VDCYNYVINVI--- 70 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHTS---
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC---
Confidence 4578999999999999999999999986 244456789999999999998876 89999999875
Q ss_pred CCCCCchhhhhccHHHHHHHh-cCHHHHhhHh
Q 013867 356 PLESEGVETKVDRTDIVALAR-GGYAEALSVQ 386 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~~a~-G~yaeal~~~ 386 (435)
++ ........+++.++..+ |+|++|+...
T Consensus 71 -~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 100 (112)
T 2kck_A 71 -ED-EYNKDVWAAKADALRYIEGKEVEAEIAE 100 (112)
T ss_dssp -CC-TTCHHHHHHHHHHHTTCSSCSHHHHHHH
T ss_pred -cc-cchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 22 11345677899999999 9999998766
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=7.2e-08 Score=86.99 Aligned_cols=88 Identities=11% Similarity=0.117 Sum_probs=72.0
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHH
Q 013867 231 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFG----------DAEEILTRT 300 (435)
Q Consensus 231 ~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~----------eAe~l~~rA 300 (435)
...+.|++|.+.|++|+++ . |+ ...+++|+|.++..+|+|+ +|+..|++|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l-----------~-------P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~A 72 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS-----------N-------PL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA 72 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH-----------C-------CC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHH
Confidence 4568999999999999999 1 11 1257899999999999875 888888888
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhh-----------hhhhhhhhHHHHHHHHHHHHHh
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKA-----------MQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG-----------~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|+| .|+.+.+++|||.+|..+| ++++| +..|+|||+|-
T Consensus 73 L~l--------dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA------~~~~~kAl~l~ 121 (158)
T 1zu2_A 73 LLI--------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLA------TQFFQQAVDEQ 121 (158)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------HHHHHHHHHHC
T ss_pred HHh--------CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHH------HHHHHHHHHhC
Confidence 887 5677788999999999986 55554 89999999996
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-07 Score=71.91 Aligned_cols=82 Identities=17% Similarity=0.226 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
..+.++|.+|..+|+|++|+.+|++++.+ +|+...++.++|.+|..+|++++| ...|++++++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~a~~~~-- 73 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEA------IEYYQKALELD-- 73 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHH------HHHHHHHHhcC--
Confidence 46789999999999999999999999986 355567899999999999998876 89999999984
Q ss_pred CCCCCCchhhhhccHHHHHHHhc
Q 013867 355 PPLESEGVETKVDRTDIVALARG 377 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~a~G 377 (435)
|+......+++.++..+|
T Consensus 74 -----p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 74 -----PNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp -----TTCHHHHHHHHHHHHHHC
T ss_pred -----CCCHHHHHHHHHHHHhcC
Confidence 333445667777776554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.64 E-value=9.3e-08 Score=78.13 Aligned_cols=83 Identities=14% Similarity=0.159 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHH
Q 013867 237 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG 316 (435)
Q Consensus 237 ~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va 316 (435)
++|+..|++++++. + . ....+.+||.+|..+|+|++|+..|++++.+ +|+..
T Consensus 2 ~~a~~~~~~al~~~--------p-~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 53 (115)
T 2kat_A 2 QAITERLEAMLAQG--------T-D-----------NMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYS 53 (115)
T ss_dssp CCHHHHHHHHHTTT--------C-C-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred hHHHHHHHHHHHhC--------C-C-----------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcH
Confidence 46788888888761 1 1 1146789999999999999999999999986 45667
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 317 VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 317 ~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
.++.+||.+|..+|++++| ...|++++++..
T Consensus 54 ~~~~~la~~~~~~g~~~~A------~~~~~~al~~~~ 84 (115)
T 2kat_A 54 VAWKWLGKTLQGQGDRAGA------RQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHH------HHHHHHHHHhcc
Confidence 7899999999999998876 899999999873
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.64 E-value=6.3e-08 Score=100.71 Aligned_cols=234 Identities=14% Similarity=0.097 Sum_probs=80.1
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
..|++++|..+++++ +||. +.+.||..+.++|++.+|++.|.++-+.. + ...+...+.
T Consensus 15 ~~~~ld~A~~fae~~----------~~~~---vWs~La~A~l~~g~~~eAIdsfika~D~~----~-----y~~V~~~ae 72 (449)
T 1b89_A 15 HIGNLDRAYEFAERC----------NEPA---VWSQLAKAQLQKGMVKEAIDSYIKADDPS----S-----YMEVVQAAN 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC----------CChH---HHHHHHHHHHHcCCHHHHHHHHHcCCCHH----H-----HHHHHHHHH
Confidence 356789999999986 4554 77799999999999999999998863321 1 111112222
Q ss_pred hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchH
Q 013867 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFL 237 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~ 237 (435)
..|.++.|..+.+.+...... + .-+.+-++.+++ + |+..++..........+..++|..|..+|+|+
T Consensus 73 ~~g~~EeAi~yl~~ark~~~~--~--~i~~~Li~~Y~K--------l-g~l~e~e~f~~~pn~~a~~~IGd~~~~~g~ye 139 (449)
T 1b89_A 73 TSGNWEELVKYLQMARKKARE--S--YVETELIFALAK--------T-NRLAELEEFINGPNNAHIQQVGDRCYDEKMYD 139 (449)
T ss_dssp -------------------------------------------------CHHHHTTTTTCC----------------CTT
T ss_pred hCCCHHHHHHHHHHHHHhCcc--c--hhHHHHHHHHHH--------h-CCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHH
Confidence 345555554433322221100 0 000011111111 1 33333332332222346677888999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh------hC
Q 013867 238 LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT--EEL------FG 309 (435)
Q Consensus 238 eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~--e~~------lG 309 (435)
+|..+|.++ . . ...||.+|..+|+|++|.+.|++|..+. .++ .|
T Consensus 140 eA~~~Y~~a--------~-----n---------------~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ 191 (449)
T 1b89_A 140 AAKLLYNNV--------S-----N---------------FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK 191 (449)
T ss_dssp THHHHHHHT--------T-----C---------------HHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh--------h-----h---------------HHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcC
Confidence 999999966 0 1 3589999999999999999999996551 110 01
Q ss_pred ------------CCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHH--H
Q 013867 310 ------------SHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVAL--A 375 (435)
Q Consensus 310 ------------~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~--a 375 (435)
..||+-.. .+..+|.++|++++| ..+++++|.+-. -|-+ +...++++|. .
T Consensus 192 ef~lA~~~~l~L~~~ad~l~---~lv~~Yek~G~~eEa------i~lLe~aL~le~----ah~~---~ftel~il~~ky~ 255 (449)
T 1b89_A 192 EFRLAQMCGLHIVVHADELE---ELINYYQDRGYFEEL------ITMLEAALGLER----AHMG---MFTELAILYSKFK 255 (449)
T ss_dssp CHHHHHHTTTTTTTCHHHHH---HHHHHHHHTTCHHHH------HHHHHHHTTSTT----CCHH---HHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhCHhhHH---HHHHHHHHCCCHHHH------HHHHHHHhCCcH----HHHH---HHHHHHHHHHhcC
Confidence 15666533 477889999997766 777877764431 2222 4445577765 5
Q ss_pred hcCHHHHhhHhhhhh
Q 013867 376 RGGYAEALSVQQNRK 390 (435)
Q Consensus 376 ~G~yaeal~~~~~r~ 390 (435)
-|+.-|.+..+..|.
T Consensus 256 p~k~~ehl~~~~~~i 270 (449)
T 1b89_A 256 PQKMREHLELFWSRV 270 (449)
T ss_dssp HHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHh
Confidence 567777777765544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.48 E-value=8.2e-07 Score=71.66 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=58.6
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|....+..++|.+|..+|+|++|+..|++++++. + .. ..++.+||.+|..+|+|++|+..
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p-~~-----------~~a~~~lg~~~~~~g~~~~A~~~ 63 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD--------P-DY-----------VGTYYHLGKLYERLDRTDDAIDT 63 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------T-TC-----------THHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C-Cc-----------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 4556778889999999999999999999999981 1 11 13578999999999999999999
Q ss_pred HHHHHHHHHH
Q 013867 297 LTRTLTKTEE 306 (435)
Q Consensus 297 ~~rAL~I~e~ 306 (435)
|++++.+..+
T Consensus 64 ~~~al~l~~~ 73 (100)
T 3ma5_A 64 YAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhhhc
Confidence 9999998654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-06 Score=70.89 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
..+.+||.+|..+|+|++|+..|++++.+ .|+...++.+||.+|..+|++++| +..|++++++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A------~~~~~~al~l~~ 72 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDA------IDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhhh
Confidence 46789999999999999999999999987 355556899999999999998876 899999999974
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00016 Score=71.32 Aligned_cols=239 Identities=10% Similarity=0.005 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESG--NYVEAIEKLQKVENFK 138 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qG--ky~eA~~l~~ral~i~ 138 (435)
.-.++.++...... ..+..++|+.+++++|.+. |+-.++.+..+.++...| +|++++.++.+++.+.
T Consensus 31 ~y~~~~~~~~a~~~---~~e~s~~aL~~t~~~L~~n--------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n 99 (306)
T 3dra_A 31 DYKQIMGLLLALMK---AEEYSERALHITELGINEL--------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN 99 (306)
T ss_dssp HHHHHHHHHHHHHH---TTCCSHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHC--------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC
Confidence 33455566665532 2344569999999999776 667888999999999999 9999999999986654
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH---HHhcC-CCchhchhhHHHHHHHHHHHHHHhcCCCcccccc
Q 013867 139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQL---CEKHK-PENYKTYGAVNSRANAVKGLVELAHGNLESGLQE 214 (435)
Q Consensus 139 e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l---~~~~~-~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~ 214 (435)
.+.-.+ ...+..-+ ....+ ...+. +++....+++..
T Consensus 100 Pk~y~a-----------------------W~~R~~iL~~~~~~l~~~~~~~--~EL~~~~~~l~~--------------- 139 (306)
T 3dra_A 100 EKNYQI-----------------------WNYRQLIIGQIMELNNNDFDPY--REFDILEAMLSS--------------- 139 (306)
T ss_dssp TTCCHH-----------------------HHHHHHHHHHHHHHTTTCCCTH--HHHHHHHHHHHH---------------
T ss_pred cccHHH-----------------------HHHHHHHHHHHHHhccccCCHH--HHHHHHHHHHHh---------------
Confidence 433221 11111111 11111 01122 344444444331
Q ss_pred cccchhHHHHHHHHHHHHhhchH--HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCC---
Q 013867 215 EEGCTGSAALSYGEYLHATRNFL--LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN--- 289 (435)
Q Consensus 215 ~~~~~~~~a~~la~~~~~~G~y~--eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~--- 289 (435)
+|....+-...+.++...|+|+ ++.+++.+++++ +.. | -.+.++.+.++...|+
T Consensus 140 -~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-----------d~~--N-------~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 140 -DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-----------DLK--N-------NSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-----------CTT--C-------HHHHHHHHHHHHSSGGGCC
T ss_pred -CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-----------CCC--C-------HHHHHHHHHHHHhccccch
Confidence 1334455555667788889999 999999999988 111 1 1367888999999998
Q ss_pred ---HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhh
Q 013867 290 ---FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKV 366 (435)
Q Consensus 290 ---y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l 366 (435)
|+++.+++.+++.+ ||+=-++.++++.++...|+..++ ...++.+++++-+ ..|.....+
T Consensus 199 ~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~-----~~~~~~~~~~~~~----~~~~s~~al 261 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQ-----LEEFSLQFVDLEK----DQVTSSFAL 261 (306)
T ss_dssp HHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGG-----GHHHHHTTEEGGG----TEESCHHHH
T ss_pred hhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHH-----HHHHHHHHHhccC----CCCCCHHHH
Confidence 88888888888875 788889999999999999986543 2556665554331 123233367
Q ss_pred ccHHHHHHHhcCHHHHhhHhhh
Q 013867 367 DRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 367 ~nla~~~~a~G~yaeal~~~~~ 388 (435)
..++.++..+|++++|+..+..
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHH
Confidence 7788888888999888887733
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.32 E-value=6.5e-06 Score=66.95 Aligned_cols=70 Identities=14% Similarity=0.051 Sum_probs=58.7
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
|....+..++|.+|..+|+|++|+.+|++++++. + . ...++.+||.+|..+|++++|...
T Consensus 16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p-~-----------~~~~~~~la~~~~~~g~~~~A~~~ 75 (115)
T 2kat_A 16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--------P-T-----------YSVAWKWLGKTLQGQGDRAGARQA 75 (115)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--------C-C-----------cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3445677889999999999999999999999881 1 1 124578999999999999999999
Q ss_pred HHHHHHHHHH
Q 013867 297 LTRTLTKTEE 306 (435)
Q Consensus 297 ~~rAL~I~e~ 306 (435)
|++++.+...
T Consensus 76 ~~~al~~~~~ 85 (115)
T 2kat_A 76 WESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhccc
Confidence 9999998654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.8e-06 Score=66.93 Aligned_cols=66 Identities=11% Similarity=0.114 Sum_probs=54.1
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-ATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 225 ~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~-~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
+.|..+..+|+|++|+.+|++++++. |+ ... .+.++|.+|..+|+|++|+..|++++.+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~------------------p~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE------------------PV--GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC------------------SS--THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC------------------CC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45777889999999999999999881 11 124 6789999999999999999999999976
Q ss_pred HHHhhCCCChhH
Q 013867 304 TEELFGSHHPKV 315 (435)
Q Consensus 304 ~e~~lG~~HP~v 315 (435)
.|+++.+
T Consensus 65 -----~p~~~~~ 71 (99)
T 2kc7_A 65 -----NPDSPAL 71 (99)
T ss_dssp -----CTTSTHH
T ss_pred -----CCCcHHH
Confidence 5666654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.25 E-value=3.5e-05 Score=76.50 Aligned_cols=195 Identities=15% Similarity=0.094 Sum_probs=108.7
Q ss_pred HHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHhcCCC
Q 013867 85 GMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN--SILGVRVAAMEALAGLYLQLGQD 162 (435)
Q Consensus 85 A~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e--~~L~i~vaale~L~g~~~~~g~~ 162 (435)
|+..+++.++. .+++ -.++..+|.+|..+|++++|+..+++.+...+ ..+... -.+.-+++.+|+.
T Consensus 85 a~~~l~~l~~~-------~~~~-~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~----~l~vqi~L~~~r~ 152 (310)
T 3mv2_B 85 NIEELENLLKD-------KQNS-PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELL----LLAIEVALLNNNV 152 (310)
T ss_dssp CCHHHHHTTTT-------SCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHH----HHHHHHHHHTTCH
T ss_pred HHHHHHHHHhc-------CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHH----HHHHHHHHHCCCH
Confidence 66666665532 1222 33456899999999999999999998744322 111111 1112334444444
Q ss_pred cchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHH--HHHHhh--chHH
Q 013867 163 DTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGE--YLHATR--NFLL 238 (435)
Q Consensus 163 ~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~--~~~~~G--~y~e 238 (435)
+.|.....++ +. .-++.-++ --.+...+++ +...+| +|.+
T Consensus 153 d~A~k~l~~~----------------------~~-------~~~d~~~~-------~d~~l~~Laea~v~l~~g~~~~q~ 196 (310)
T 3mv2_B 153 STASTIFDNY----------------------TN-------AIEDTVSG-------DNEMILNLAESYIKFATNKETATS 196 (310)
T ss_dssp HHHHHHHHHH----------------------HH-------HSCHHHHH-------HHHHHHHHHHHHHHHHHTCSTTTH
T ss_pred HHHHHHHHHH----------------------Hh-------cCcccccc-------chHHHHHHHHHHHHHHhCCccHHH
Confidence 3333221111 00 00000000 0012222332 233445 9999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----hhCCCCh
Q 013867 239 AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE-----LFGSHHP 313 (435)
Q Consensus 239 Ae~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~-----~lG~~HP 313 (435)
|..+|++..+- .+... +...+.| ++..+|+|+||+..+++.++.+=. ...++|
T Consensus 197 A~~~f~El~~~---------~p~~~---------~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~- 254 (310)
T 3mv2_B 197 NFYYYEELSQT---------FPTWK---------TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK- 254 (310)
T ss_dssp HHHHHHHHHTT---------SCSHH---------HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH-
T ss_pred HHHHHHHHHHh---------CCCcc---------cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC-
Confidence 99999995422 11100 1123344 799999999999999977776422 223445
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchh
Q 013867 314 KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 363 (435)
Q Consensus 314 ~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a 363 (435)
+.+|.|+..++..+|+ +| +.+++++.+. .|+||-+.
T Consensus 255 --~~~LaN~i~l~~~lgk--~a------~~l~~qL~~~----~P~hp~i~ 290 (310)
T 3mv2_B 255 --PTFLANQITLALMQGL--DT------EDLTNQLVKL----DHEHAFIK 290 (310)
T ss_dssp --HHHHHHHHHHHHHTTC--TT------HHHHHHHHHT----TCCCHHHH
T ss_pred --HHHHHHHHHHHHHhCh--HH------HHHHHHHHHh----CCCChHHH
Confidence 5568888888888887 44 7787777665 48888643
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.8e-05 Score=64.87 Aligned_cols=79 Identities=11% Similarity=0.152 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
..+|..+..+|+|++|+.+|++|+...... +..+. + ....+.+||..|..+|++++|..+|++|+.+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~------~~~~~-----~--~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEG------EISTI-----D--KVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTT------CCCSS-----C--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhcc------CCCcc-----c--HHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 467889999999999999999999985321 11221 1 2356789999999999999999999999985
Q ss_pred HHHhhCCCChhHHHHHHHHH
Q 013867 304 TEELFGSHHPKVGVVLTCLA 323 (435)
Q Consensus 304 ~e~~lG~~HP~va~~L~nLA 323 (435)
.|+|+.+ ++|++
T Consensus 76 -----~P~~~~~---~~n~~ 87 (104)
T 2v5f_A 76 -----DPEHQRA---NGNLK 87 (104)
T ss_dssp -----CTTCHHH---HHHHH
T ss_pred -----CCCCHHH---HhhHH
Confidence 6777665 77776
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=7.5e-06 Score=73.75 Aligned_cols=67 Identities=13% Similarity=0.224 Sum_probs=54.8
Q ss_pred cchhHHHHHHHHHHHHhhch----------HHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNF----------LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH 286 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y----------~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~ 286 (435)
|....+..++|.++..+|+| ++|+..|++||+| . |+ ...+++|||.+|..
T Consensus 33 P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----------d-------P~--~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 33 PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----------D-------PK--KDEAVWCIGNAYTS 92 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----------C-------cC--cHHHHHHHHHHHHH
Confidence 44566778888888888876 5999999999999 1 11 12578999999999
Q ss_pred cC-----------CHHHHHHHHHHHHHH
Q 013867 287 MG-----------NFGDAEEILTRTLTK 303 (435)
Q Consensus 287 qG-----------~y~eAe~l~~rAL~I 303 (435)
+| +|++|+.+|++|++|
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 85 899999999999998
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.4e-05 Score=68.68 Aligned_cols=107 Identities=14% Similarity=0.120 Sum_probs=84.7
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH 312 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~H 312 (435)
.+++++|..+|++|.+. + + . .+. ||.+|...+.+++|..+|++|.+. .|
T Consensus 8 ~~d~~~A~~~~~~aa~~-----g---~-~-------------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~-------g~ 56 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-----N---E-M-------------FGC--LSLVSNSQINKQKLFQYLSKACEL-------NS 56 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-----T---C-T-------------THH--HHHHTCTTSCHHHHHHHHHHHHHT-------TC
T ss_pred ccCHHHHHHHHHHHHcC-----C---C-H-------------hhh--HHHHHHcCCCHHHHHHHHHHHHcC-------CC
Confidence 47899999999999865 1 1 1 122 999999999999999999999875 33
Q ss_pred hhHHHHHHHHHHHHHH----hhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHH----hcCHHHHhh
Q 013867 313 PKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA----RGGYAEALS 384 (435)
Q Consensus 313 P~va~~L~nLA~ly~~----qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a----~G~yaeal~ 384 (435)
..+++|||.+|.. .+++++| ..+|++|.+. ++ .....|++.+|.. .+++++|+.
T Consensus 57 ---~~a~~~Lg~~y~~G~g~~~d~~~A------~~~~~~Aa~~------g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~ 118 (138)
T 1klx_A 57 ---GNGCRFLGDFYENGKYVKKDLRKA------AQYYSKACGL------ND---QDGCLILGYKQYAGKGVVKNEKQAVK 118 (138)
T ss_dssp ---HHHHHHHHHHHHHCSSSCCCHHHH------HHHHHHHHHT------TC---HHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCCCCccHHHH------HHHHHHHHcC------CC---HHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 5789999999998 7776665 8999999874 23 3366789999988 778888877
Q ss_pred Hhhh
Q 013867 385 VQQN 388 (435)
Q Consensus 385 ~~~~ 388 (435)
.+.+
T Consensus 119 ~~~~ 122 (138)
T 1klx_A 119 TFEK 122 (138)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7644
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00019 Score=70.84 Aligned_cols=189 Identities=9% Similarity=-0.052 Sum_probs=123.7
Q ss_pred cHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 013867 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLL----YES---GNYVEAIEKLQKVENFKNSILGVRVAAMEALA 153 (435)
Q Consensus 81 ~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly----~~q---Gky~eA~~l~~ral~i~e~~L~i~vaale~L~ 153 (435)
.|++++.+++++|.+. |...++.+..+.++ ... ++++++++++.+++.+..+...+ +.
T Consensus 84 ~~~eeL~~~~~~L~~n--------Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~a----W~--- 148 (306)
T 3dra_A 84 NLYDELDWCEEIALDN--------EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHV----WS--- 148 (306)
T ss_dssp CHHHHHHHHHHHHHHC--------TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHH----HH---
T ss_pred cHHHHHHHHHHHHHHC--------cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHH----HH---
Confidence 8999999999999654 55566777788887 666 89999999999987665444221 11
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHh
Q 013867 154 GLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHAT 233 (435)
Q Consensus 154 g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~ 233 (435)
.+.. ++..-+. ++..+++....++|.. ++....+-...+.++...
T Consensus 149 ----------------~R~~-vl~~l~~--~~~~~EL~~~~~~i~~----------------d~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 149 ----------------YRKW-LVDTFDL--HNDAKELSFVDKVIDT----------------DLKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp ----------------HHHH-HHHHTTC--TTCHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHSS
T ss_pred ----------------HHHH-HHHHhcc--cChHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHhc
Confidence 1111 1111111 2111233333333321 122223334445556666
Q ss_pred hc------hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHH
Q 013867 234 RN------FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD-AEEILTRTLTKTEE 306 (435)
Q Consensus 234 G~------y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~e-Ae~l~~rAL~I~e~ 306 (435)
|+ |+++..++.+++.+ .+. | -.+.+.++.++...|+..+ ...+..+++.+.
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~-----------~p~--n-------~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~-- 251 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVK-----------CPQ--N-------PSTWNYLLGIHERFDRSITQLEEFSLQFVDLE-- 251 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHH-----------CSS--C-------HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG--
T ss_pred cccchhhhHHHHHHHHHHHHHh-----------CCC--C-------ccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc--
Confidence 66 99999999999988 111 1 1467899999999999655 666777777642
Q ss_pred hhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 013867 307 LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 350 (435)
Q Consensus 307 ~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~ 350 (435)
+.+|.-.-++..||.+|..+|+.++| ..+|+++.+
T Consensus 252 ---~~~~~s~~al~~la~~~~~~~~~~~A------~~~~~~l~~ 286 (306)
T 3dra_A 252 ---KDQVTSSFALETLAKIYTQQKKYNES------RTVYDLLKS 286 (306)
T ss_dssp ---GTEESCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHH
T ss_pred ---CCCCCCHHHHHHHHHHHHccCCHHHH------HHHHHHHHh
Confidence 33566667899999999999997766 888988775
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0002 Score=71.10 Aligned_cols=188 Identities=10% Similarity=0.019 Sum_probs=111.9
Q ss_pred HHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHH
Q 013867 66 INYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR 145 (435)
Q Consensus 66 ~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~ 145 (435)
.-+|..+. ..|+|++|+.++++++...+ .+.....+.-++.+|..+|+.+.|...+++..++.+.....+
T Consensus 104 ~~la~i~~----~~g~~eeAL~~l~~~i~~~~------~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~ 173 (310)
T 3mv2_B 104 YLLATAQA----ILGDLDKSLETCVEGIDNDE------AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGD 173 (310)
T ss_dssp HHHHHHHH----HHTCHHHHHHHHHHHHTSSC------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHH----HcCCHHHHHHHHHHHhccCC------CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccc
Confidence 45555553 26899999999999985442 146778888899999999999999999998765543100000
Q ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHH
Q 013867 146 VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALS 225 (435)
Q Consensus 146 vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~ 225 (435)
+..-..+++-.+.+....+ ++. ++.+.+.. +...+|+ ........+
T Consensus 174 ----------------d~~l~~Laea~v~l~~g~~--~~q--~A~~~f~E--------l~~~~p~------~~~~~lLln 219 (310)
T 3mv2_B 174 ----------------NEMILNLAESYIKFATNKE--TAT--SNFYYYEE--------LSQTFPT------WKTQLGLLN 219 (310)
T ss_dssp ----------------HHHHHHHHHHHHHHHHTCS--TTT--HHHHHHHH--------HHTTSCS------HHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHHhCCc--cHH--HHHHHHHH--------HHHhCCC------cccHHHHHH
Confidence 1110111222223332211 233 23322322 2222221 001123333
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
++..+|+|++|+..+++.++..=+.. .+.... |++ ..++.|+..+...+|+ +|+++++|+.+.
T Consensus 220 ---~~~~~g~~~eAe~~L~~l~~~~p~~~---~k~~~~-----p~~--~~~LaN~i~l~~~lgk--~a~~l~~qL~~~-- 282 (310)
T 3mv2_B 220 ---LHLQQRNIAEAQGIVELLLSDYYSVE---QKENAV-----LYK--PTFLANQITLALMQGL--DTEDLTNQLVKL-- 282 (310)
T ss_dssp ---HHHHHTCHHHHHHHHHHHHSHHHHTT---TCHHHH-----SSH--HHHHHHHHHHHHHTTC--TTHHHHHHHHHT--
T ss_pred ---HHHHcCCHHHHHHHHHHHHHhccccc---ccccCC-----CCC--HHHHHHHHHHHHHhCh--HHHHHHHHHHHh--
Confidence 68899999999999997776621100 000000 222 2467799999999998 999999988764
Q ss_pred HhhCCCChhHHH
Q 013867 306 ELFGSHHPKVGV 317 (435)
Q Consensus 306 ~~lG~~HP~va~ 317 (435)
-|+||-+..
T Consensus 283 ---~P~hp~i~d 291 (310)
T 3mv2_B 283 ---DHEHAFIKH 291 (310)
T ss_dssp ---TCCCHHHHH
T ss_pred ---CCCChHHHH
Confidence 599998754
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.8e-05 Score=62.23 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHH-HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 278 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV-VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 278 ~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~-~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.++|..|..+|+|++|...|++++.+ +|+-.. .+.++|.+|..+|++++| +..|++++++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A------~~~~~~al~~~ 65 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKA------LNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhcC
Confidence 47899999999999999999999986 455556 899999999999998776 89999999885
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=97.98 E-value=3.5e-06 Score=87.64 Aligned_cols=103 Identities=8% Similarity=-0.052 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
+++++|..+.++|+|++|..+|.++ ..+.+||..|...|+|++| ...|++|
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~A------Vea~~KA------- 174 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAA------VDGARKA------- 174 (449)
T ss_dssp -------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHH------HHHHHHH-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHH------HHHHHHc-------
Confidence 5667777777777777777777766 3667777777777776655 6667766
Q ss_pred CCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhhHHHHHHHHHHHHhcccchhHH
Q 013867 356 PLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLA 412 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~eae~~~~~a~~~~~~~r~~l~ 412 (435)
..|.+- .....+|...|++..|.....+=..-++.+.....-+-+.+++..+
T Consensus 175 --~~~~~W---k~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 175 --NSTRTW---KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp --TCHHHH---HHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred --CCchhH---HHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHH
Confidence 122222 2233556677777777554422112233343444556667777666
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=2.5e-05 Score=67.05 Aligned_cols=88 Identities=9% Similarity=0.033 Sum_probs=74.1
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH----MGNFGDAEEILTRTL 301 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~----qG~y~eAe~l~~rAL 301 (435)
+|.+|...+.+++|..+|++|.+. + . ..+.++||.+|.. .+++++|..+|++|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~-----g-----~------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 88 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL-----N-----S------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC 88 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT-----T-----C------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC-----C-----C------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 788888888999999999999865 2 1 1467899999999 999999999999998
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHH----hhhhhhhhhhHHHHHHHHHHHHH
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~----qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
+. .| ..+++|||.+|.. .+++++| ..+|++|.+.
T Consensus 89 ~~-------g~---~~a~~~Lg~~y~~G~g~~~d~~~A------~~~~~~Aa~~ 126 (138)
T 1klx_A 89 GL-------ND---QDGCLILGYKQYAGKGVVKNEKQA------VKTFEKACRL 126 (138)
T ss_dssp HT-------TC---HHHHHHHHHHHHHTSSSCCCHHHH------HHHHHHHHHT
T ss_pred cC-------CC---HHHHHHHHHHHHCCCCCCcCHHHH------HHHHHHHHHC
Confidence 64 23 5679999999998 7786665 8999999886
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.83 E-value=6.2e-05 Score=61.57 Aligned_cols=80 Identities=16% Similarity=0.123 Sum_probs=62.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP 356 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~ 356 (435)
.+.||..+..+|+|.+|...|++|+.....--. .-+....++.+||.+|..+|++++| ..+|++++.+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A------~~~~~~al~l~---- 76 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKA------LLLTKKLLELD---- 76 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHH------HHHHHHHHhcC----
Confidence 468999999999999999999999988753211 1134568889999999999998776 89999999874
Q ss_pred CCCCchhhhhccHH
Q 013867 357 LESEGVETKVDRTD 370 (435)
Q Consensus 357 ~~hp~~a~~l~nla 370 (435)
|+|+. .++|+.
T Consensus 77 P~~~~---~~~n~~ 87 (104)
T 2v5f_A 77 PEHQR---ANGNLK 87 (104)
T ss_dssp TTCHH---HHHHHH
T ss_pred CCCHH---HHhhHH
Confidence 55544 356665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0006 Score=72.54 Aligned_cols=177 Identities=8% Similarity=-0.023 Sum_probs=123.0
Q ss_pred hcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhhhhhHHHHHHHH
Q 013867 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN----------YVEAIEKLQKVENFKNSILGVRVAAM 149 (435)
Q Consensus 80 G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGk----------y~eA~~l~~ral~i~e~~L~i~vaal 149 (435)
...++|+.++++++.+. |+-.++.+..+.++...|+ |++|++.+.+++.+..+.-
T Consensus 43 ~~~eeal~~~~~~l~~n--------P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y------- 107 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY------- 107 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH-------
T ss_pred CCCHHHHHHHHHHHHHC--------chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH-------
Confidence 44568899999999766 6678889999999999999 9999999998865443321
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHH
Q 013867 150 EALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEY 229 (435)
Q Consensus 150 e~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~ 229 (435)
..+..+..- +..-+...|+ +++....+++.. +|....+-...+.+
T Consensus 108 ----------------~aW~hR~w~-l~~l~~~~~~--~el~~~~k~l~~----------------d~~N~~aW~~R~~~ 152 (567)
T 1dce_A 108 ----------------GTWHHRCWL-LSRLPEPNWA--RELELCARFLEA----------------DERNFHCWDYRRFV 152 (567)
T ss_dssp ----------------HHHHHHHHH-HHTCSSCCHH--HHHHHHHHHHHH----------------CTTCHHHHHHHHHH
T ss_pred ----------------HHHHHHHHH-HHHcccccHH--HHHHHHHHHHhh----------------ccccccHHHHHHHH
Confidence 122233222 2222211122 455555555552 13333455556677
Q ss_pred HHHhh-chHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc--------------CCHHHHH
Q 013867 230 LHATR-NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM--------------GNFGDAE 294 (435)
Q Consensus 230 ~~~~G-~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q--------------G~y~eAe 294 (435)
+...| .|++|..++.+++++ .+. | ..+.++.+.++..+ ++|++|.
T Consensus 153 l~~l~~~~~~el~~~~~~I~~-----------~p~--n-------~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel 212 (567)
T 1dce_A 153 AAQAAVAPAEELAFTDSLITR-----------NFS--N-------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL 212 (567)
T ss_dssp HHHTCCCHHHHHHHHHTTTTT-----------TCC--C-------HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHH-----------CCC--C-------ccHHHHHHHHHHhhcccccccccccccHHHHHHHH
Confidence 88888 899999999999876 111 1 24678899998885 6678888
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhh
Q 013867 295 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH 334 (435)
Q Consensus 295 ~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~ 334 (435)
+++.+|+.+ .|+-..+.++++.++...+++++
T Consensus 213 ~~~~~ai~~--------~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 213 ELVQNAFFT--------DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHH--------CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHhh--------CCCCccHHHHHHHHHhcCCCccc
Confidence 888888876 35666789999999999998765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00064 Score=55.05 Aligned_cols=85 Identities=8% Similarity=-0.045 Sum_probs=64.2
Q ss_pred cchhHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHH
Q 013867 217 GCTGSAALSYGEYLHATRN---FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~---y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eA 293 (435)
|....+...+|.++.-.++ .++|..++++||++ . |+ .+.++..||.++..+|+|++|
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-----------d-------p~--~~rA~~~lg~~~~~~g~y~~A 62 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL-----------E-------PY--NEAALSLIANDHFISFRFQEA 62 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-----------C-------cC--CHHHHHHHHHHHHHcCCHHHH
Confidence 3445677778877654444 79999999999998 1 11 135788999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 013867 294 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMF 326 (435)
Q Consensus 294 e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly 326 (435)
...|+++|+. .|+.|.....-..++...
T Consensus 63 i~~w~~~l~~-----~p~~~~~~~i~~~I~~A~ 90 (93)
T 3bee_A 63 IDTWVLLLDS-----NDPNLDRVTIIESINKAK 90 (93)
T ss_dssp HHHHHHHHTC-----CCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-----CCCCccHHHHHHHHHHHH
Confidence 9999999874 444677777766666543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0031 Score=62.10 Aligned_cols=88 Identities=11% Similarity=-0.044 Sum_probs=68.4
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHh
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM-----GNFGDAEEILTRTLTKTEEL 307 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q-----G~y~eAe~l~~rAL~I~e~~ 307 (435)
.+...+|+.+.+||++|- +.. ..-.+...||.+|... |+.++|+.+|+|||+|
T Consensus 176 l~~l~~A~a~lerAleLD--------P~~----------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---- 233 (301)
T 3u64_A 176 PDTVHAAVMMLERACDLW--------PSY----------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---- 233 (301)
T ss_dssp HHHHHHHHHHHHHHHHHC--------TTH----------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH----
T ss_pred HHhHHHHHHHHHHHHHhC--------CCc----------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh----
Confidence 356789999999999991 111 1123567899999985 9999999999999998
Q ss_pred hCCCChhH-HHHHHHHHHHHHH-hhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 308 FGSHHPKV-GVVLTCLALMFRN-KAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 308 lG~~HP~v-a~~L~nLA~ly~~-qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.|.- ..+....|..|.. +|+++++ +.++++||.+-
T Consensus 234 ----nP~~~id~~v~YA~~l~~~~gd~~~a------~~~L~kAL~a~ 270 (301)
T 3u64_A 234 ----CSAHDPDHHITYADALCIPLNNRAGF------DEALDRALAID 270 (301)
T ss_dssp ----CCTTCSHHHHHHHHHTTTTTTCHHHH------HHHHHHHHHCC
T ss_pred ----CCCCCchHHHHHHHHHHHhcCCHHHH------HHHHHHHHcCC
Confidence 3432 5677888998877 5987766 89999998864
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0011 Score=65.31 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHHh-----hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH-cCCHHH
Q 013867 219 TGSAALSYGEYLHAT-----RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH-MGNFGD 292 (435)
Q Consensus 219 ~~~~a~~la~~~~~~-----G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~-qG~y~e 292 (435)
.|.+...+|.+|... |+.++|+.+|+|||+| .-+ + .+ .+...+|..|.. +|++++
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~---~-~i------------d~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSA---H-DP------------DHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCT---T-CS------------HHHHHHHHHTTTTTTCHHH
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCC---C-Cc------------hHHHHHHHHHHHhcCCHHH
Confidence 356777889888884 9999999999999999 111 0 11 234578888877 599999
Q ss_pred HHHHHHHHHHH
Q 013867 293 AEEILTRTLTK 303 (435)
Q Consensus 293 Ae~l~~rAL~I 303 (435)
|+.++++||++
T Consensus 259 a~~~L~kAL~a 269 (301)
T 3u64_A 259 FDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHcC
Confidence 99999999985
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.029 Score=56.33 Aligned_cols=228 Identities=9% Similarity=-0.049 Sum_probs=135.6
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN-YVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGk-y~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~ 157 (435)
.+...+|+.+++++|.+. |+-.++.+..+.++...|+ ++++++++.+++.+..+.-.+
T Consensus 67 ~e~se~AL~lt~~~L~~n--------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~a------------- 125 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN--------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQV------------- 125 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHH-------------
T ss_pred CCCCHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH-------------
Confidence 456679999999999776 5567889999999999994 999999999986654433221
Q ss_pred hcCCCcchHHHHHHHHHHHHhc-CCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhch
Q 013867 158 QLGQDDTSSVVADKCLQLCEKH-KPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNF 236 (435)
Q Consensus 158 ~~g~~~~A~~~~~~~~~l~~~~-~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y 236 (435)
...+. .++... +. .+. +++....+++ ..+ |....+-...+.++...|++
T Consensus 126 ----------W~hR~-wlL~~l~~~-~~~--~EL~~~~k~L--------~~d--------pkNy~AW~~R~wvl~~l~~~ 175 (349)
T 3q7a_A 126 ----------WHHRL-LLLDRISPQ-DPV--SEIEYIHGSL--------LPD--------PKNYHTWAYLHWLYSHFSTL 175 (349)
T ss_dssp ----------HHHHH-HHHHHHCCS-CCH--HHHHHHHHHT--------SSC--------TTCHHHHHHHHHHHHHHHHT
T ss_pred ----------HHHHH-HHHHHhcCC-ChH--HHHHHHHHHH--------HhC--------CCCHHHHHHHHHHHHHhccc
Confidence 11121 111111 10 121 2232222222 111 22334444455667777888
Q ss_pred H--------HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHH
Q 013867 237 L--------LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN-------FGDAEEILTRTL 301 (435)
Q Consensus 237 ~--------eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~-------y~eAe~l~~rAL 301 (435)
+ ++..++.+++++ .+. | -.+.++.+.++...|+ ++++.+++++++
T Consensus 176 ~~~~~~~~~eELe~~~k~I~~-----------dp~--N-------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI 235 (349)
T 3q7a_A 176 GRISEAQWGSELDWCNEMLRV-----------DGR--N-------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSI 235 (349)
T ss_dssp TCCCHHHHHHHHHHHHHHHHH-----------CTT--C-------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHh-----------CCC--C-------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence 7 999999999988 111 1 1467899999999998 566666666666
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhh----------hhhhHH-HHHHHHHHHHHhcCCC---CCCCchhhhhc
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH----------SSALLI-QEGLYRRALEFLKAPP---LESEGVETKVD 367 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~----------A~~~~~-Ae~Ly~rAL~I~k~~~---~~hp~~a~~l~ 367 (435)
.+ +|+=-++.+++..++..-|+... ++.... -..+-.-|++.....+ .+.+ ..-.+.
T Consensus 236 ~~--------~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~al~ 306 (349)
T 3q7a_A 236 HL--------IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP-VPLALE 306 (349)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC-CHHHHH
T ss_pred Hh--------CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC-cHHHHH
Confidence 55 78888899999999998876410 000000 0122333333332111 1112 222455
Q ss_pred cHHHHHHHhcCHHHHhhHh
Q 013867 368 RTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 368 nla~~~~a~G~yaeal~~~ 386 (435)
-++-+|..+|+.++|+...
T Consensus 307 ~l~d~~~~~~~~~~a~~~~ 325 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVF 325 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHH
Confidence 6777888888888887766
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.035 Score=56.68 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=71.7
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 225 ~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
.++.+|..+|+|.+|..++.+.+.-..+ .+. + . ..+.....-.++|..+|++.++..+|++|..+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~----~dd---~------~-~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKK----LDD---K------N-LLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTT----SSC---T------H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhc----ccc---c------h-hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 5788999999999999999999987532 111 1 0 123344466889999999999999999999998
Q ss_pred HHhhCCCChhHHHHHHHH-HHHHH-Hhhhhhhh
Q 013867 305 EELFGSHHPKVGVVLTCL-ALMFR-NKAMQEHS 335 (435)
Q Consensus 305 e~~lG~~HP~va~~L~nL-A~ly~-~qG~~e~A 335 (435)
...+ .||.+-..+... |.++. .+++|.+|
T Consensus 170 ~ai~--~~p~i~a~i~~~~Gi~~l~~~rdyk~A 200 (394)
T 3txn_A 170 NAIY--CPPKVQGALDLQSGILHAADERDFKTA 200 (394)
T ss_dssp HHSC--CCHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccCC--CCHHHHHHHHHHhhHHHHHhccCHHHH
Confidence 8764 899865555544 55555 69998877
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.019 Score=57.14 Aligned_cols=172 Identities=8% Similarity=-0.018 Sum_probs=103.4
Q ss_pred hhcHH-HHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhhhhhHHHHHH
Q 013867 79 DESYS-QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN----------YVEAIEKLQKVENFKNSILGVRVA 147 (435)
Q Consensus 79 ~G~Y~-eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGk----------y~eA~~l~~ral~i~e~~L~i~va 147 (435)
.|.|+ +|+.+++++|.+. |+..++.+..+.++...|+ |++++.++.+++.+..+.-
T Consensus 42 ~~e~s~eaL~~t~~~L~~n--------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny----- 108 (331)
T 3dss_A 42 AGELDESVLELTSQILGAN--------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY----- 108 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH-----
T ss_pred cCCCCHHHHHHHHHHHHHC--------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH-----
Confidence 35665 8999999999655 5667888888888887776 4566665555543332221
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHH
Q 013867 148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYG 227 (435)
Q Consensus 148 ale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la 227 (435)
.....+. .++..-+...+. +++....+++.. +|....+-+..+
T Consensus 109 ------------------~aW~hR~-wlL~~l~~~~~~--~EL~~~~k~l~~----------------dprNy~AW~~R~ 151 (331)
T 3dss_A 109 ------------------GTWHHRC-WLLSRLPEPNWA--RELELCARFLEA----------------DERNFHCWDYRR 151 (331)
T ss_dssp ------------------HHHHHHH-HHHHHCSSCCHH--HHHHHHHHHHHH----------------CTTCHHHHHHHH
T ss_pred ------------------HHHHHHH-HHHhccCcccHH--HHHHHHHHHHHh----------------CCCCHHHHHHHH
Confidence 1122222 222222211122 334444444331 133334555556
Q ss_pred HHHHHhhc-hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc--------------CCHHH
Q 013867 228 EYLHATRN-FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM--------------GNFGD 292 (435)
Q Consensus 228 ~~~~~~G~-y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q--------------G~y~e 292 (435)
.++...|+ ++++..++.+++++ .+. | ..+.++.+.++... +.|++
T Consensus 152 ~vl~~l~~~~~eel~~~~~~I~~-----------~p~--N-------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~e 211 (331)
T 3dss_A 152 FVAAQAAVAPAEELAFTDSLITR-----------NFS--N-------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK 211 (331)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHH-----------CSC--C-------HHHHHHHHHHHHHHSCCC------CCCHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHH-----------CCC--C-------HHHHHHHHHHHHHhhhccccccccccchHHHHH
Confidence 67778888 59999999999988 111 1 14678888888887 56788
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHH
Q 013867 293 AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN 328 (435)
Q Consensus 293 Ae~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~ 328 (435)
+.+++.+++.+ +|+=.++.+.+..++..
T Consensus 212 Ele~~~~ai~~--------~P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 212 ELELVQNAFFT--------DPNDQSAWFYHRWLLGA 239 (331)
T ss_dssp HHHHHHHHHHH--------STTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHHHh
Confidence 88888888875 45555566544444433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0011 Score=60.06 Aligned_cols=97 Identities=12% Similarity=-0.007 Sum_probs=69.9
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013867 228 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL 307 (435)
Q Consensus 228 ~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~ 307 (435)
.-+...|.|+-|+.++..++.+... ++.+.+ | +....++..+|.++..+|+|.+|+..|++||..++.+
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~------~~~~~s----p-~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l 96 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNN------NPELFS----P-PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL 96 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH------STTSSC----H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcC------Cccccc----H-HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999432 122220 2 2345678999999999999999999999999999854
Q ss_pred hCCCC-----------------hhHHHHHHHHHHHHHHhhhhhhh
Q 013867 308 FGSHH-----------------PKVGVVLTCLALMFRNKAMQEHS 335 (435)
Q Consensus 308 lG~~H-----------------P~va~~L~nLA~ly~~qG~~e~A 335 (435)
.-..- +.-...-..+|..|...+++++|
T Consensus 97 ~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 97 SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp --------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred hcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 31111 11235667799999999885544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00068 Score=54.87 Aligned_cols=71 Identities=17% Similarity=0.119 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
|+.+..+..||..+... .+....++|+.+++++|.+. |.-...+..||..++.+|+|++|+..|+++++..
T Consensus 3 p~~~~~~~~~a~al~~~-~~~~~~~~A~~~l~~AL~~d--------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYL-HKQAMTDEVSLLLEQALQLE--------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHT-TTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHC--------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34455667777777422 12334789999999999765 5667888889999999999999999999986543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.03 Score=60.89 Aligned_cols=206 Identities=9% Similarity=0.045 Sum_probs=121.2
Q ss_pred cHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 013867 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAI-EKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (435)
Q Consensus 81 ~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~-~l~~ral~i~e~~L~i~vaale~L~g~~~~~ 159 (435)
..++...+|++||... |.........+..+..+|+.++|. ..|++++........+.. ..+.++...
T Consensus 324 ~~~Rv~~~Ye~aL~~~--------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl----~~a~~ee~~ 391 (679)
T 4e6h_A 324 HKARMTYVYMQAAQHV--------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAF----SLSEQYELN 391 (679)
T ss_dssp HHHHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHh
Confidence 3567788999999764 456677777888999999999997 999999665443322111 111122223
Q ss_pred CCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccc---cccccchhHHHHHHHHHHHHhhch
Q 013867 160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGL---QEEEGCTGSAALSYGEYLHATRNF 236 (435)
Q Consensus 160 g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~---~~~~~~~~~~a~~la~~~~~~G~y 236 (435)
|..+.|..+++.++..+.. .+..+....|... ..-......+-..++.+...+|+.
T Consensus 392 ~~~e~aR~iyek~l~~l~~---------------------~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l 450 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHL---------------------DLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL 450 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHH---------------------HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHHHHH---------------------HhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH
Confidence 3333333333333322110 0000000001000 000011223456677788889999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhCCCChhH
Q 013867 237 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG-NFGDAEEILTRTLTKTEELFGSHHPKV 315 (435)
Q Consensus 237 ~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG-~y~eAe~l~~rAL~I~e~~lG~~HP~v 315 (435)
+.|..+|.+|++. .. ... .+ .....|.+....| ++++|..+|+++|..+ + +.|.
T Consensus 451 ~~AR~vf~~A~~~----~~-----~~~------~~----lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~----p-~~~~- 505 (679)
T 4e6h_A 451 AASRKIFGKCRRL----KK-----LVT------PD----IYLENAYIEYHISKDTKTACKVLELGLKYF----A-TDGE- 505 (679)
T ss_dssp HHHHHHHHHHHHT----GG-----GSC------TH----HHHHHHHHHHTTTSCCHHHHHHHHHHHHHH----T-TCHH-
T ss_pred HHHHHHHHHHHHh----cC-----CCC------hH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHC----C-CchH-
Confidence 9999999999865 11 100 11 1234566666655 5999999999999863 2 3344
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 316 GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 316 a~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.....+.+....|+.+.| ..+|+||+...
T Consensus 506 --~w~~y~~fe~~~~~~~~A------R~lferal~~~ 534 (679)
T 4e6h_A 506 --YINKYLDFLIYVNEESQV------KSLFESSIDKI 534 (679)
T ss_dssp --HHHHHHHHHHHHTCHHHH------HHHHHHHTTTS
T ss_pred --HHHHHHHHHHhCCCHHHH------HHHHHHHHHhc
Confidence 345666777888887766 89999998765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.047 Score=57.00 Aligned_cols=98 Identities=10% Similarity=-0.017 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+.+.+-..|...|++++|..+|++...- | +. |+ +.+++.|=..|...|++++|..+|.+-.
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g------~~-----Pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAF-----G------IQ-----PR---LRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T------CC-----CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C------CC-----Cc---cceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455666788999999999999876432 2 11 32 2456677778999999999999998865
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
.- | -.|+ ..+++.|-..|...|+.++| +.++++.-+.
T Consensus 168 ~~-----G-~~Pd-~~ty~~Li~~~~~~g~~d~A------~~ll~~Mr~~ 204 (501)
T 4g26_A 168 ES-----E-VVPE-EPELAALLKVSMDTKNADKV------YKTLQRLRDL 204 (501)
T ss_dssp HT-----T-CCCC-HHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH
T ss_pred hc-----C-CCCC-HHHHHHHHHHHhhCCCHHHH------HHHHHHHHHh
Confidence 32 2 2343 46799999999999998877 6777765443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.13 Score=55.95 Aligned_cols=206 Identities=7% Similarity=-0.035 Sum_probs=121.8
Q ss_pred ChhcHHHHH-HHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGM-LVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156 (435)
Q Consensus 78 s~G~Y~eA~-~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~ 156 (435)
..|+.++|. .+|++|+... |.........+.++...|++++|..+|+++++....... .+..
T Consensus 355 ~~~~~~~a~r~il~rAi~~~--------P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~----~~~~----- 417 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQCI--------PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA----ALME----- 417 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH----HHHH-----
T ss_pred hcCcHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh----hhhh-----
Confidence 356678997 9999998654 333455678999999999999999999999764321110 0000
Q ss_pred HhcCCCc---------chHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHH
Q 013867 157 LQLGQDD---------TSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYG 227 (435)
Q Consensus 157 ~~~g~~~---------~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la 227 (435)
.-|.. .-..+.-..+.+....+. .+.|..++.++ +.. . + ++...+....|
T Consensus 418 --~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~--l~~AR~vf~~A--~~~----~----~-------~~~~~lyi~~A 476 (679)
T 4e6h_A 418 --DDPTNESAINQLKSKLTYVYCVYMNTMKRIQG--LAASRKIFGKC--RRL----K----K-------LVTPDIYLENA 476 (679)
T ss_dssp --HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHH--HHT----G----G-------GSCTHHHHHHH
T ss_pred --ccCcchhhhhhhccchHHHHHHHHHHHHHcCC--HHHHHHHHHHH--HHh----c----C-------CCChHHHHHHH
Confidence 00100 000011122222222111 22233333222 210 0 1 22233444455
Q ss_pred HHHHH-hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013867 228 EYLHA-TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 306 (435)
Q Consensus 228 ~~~~~-~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~ 306 (435)
.+-.. .++++.|..+|+++|+.+ . +. + .-+...+.+...+|+.+.|..+|+||+...-
T Consensus 477 ~lE~~~~~d~e~Ar~ife~~Lk~~---p---~~---------~-----~~w~~y~~fe~~~~~~~~AR~lferal~~~~- 535 (679)
T 4e6h_A 477 YIEYHISKDTKTACKVLELGLKYF---A---TD---------G-----EYINKYLDFLIYVNEESQVKSLFESSIDKIS- 535 (679)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHH---T---TC---------H-----HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHC---C---Cc---------h-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC-
Confidence 55444 456999999999999873 1 11 1 1235667778889999999999999986422
Q ss_pred hhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 307 LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 307 ~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+-.+.......+...-...|..+.+ ..+++|+++..
T Consensus 536 ----~~~~~~~lw~~~~~fE~~~G~~~~~------~~v~~R~~~~~ 571 (679)
T 4e6h_A 536 ----DSHLLKMIFQKVIFFESKVGSLNSV------RTLEKRFFEKF 571 (679)
T ss_dssp ----STTHHHHHHHHHHHHHHHTCCSHHH------HHHHHHHHHHS
T ss_pred ----CHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 1124556666777777778886655 88999998877
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.026 Score=59.85 Aligned_cols=119 Identities=8% Similarity=-0.053 Sum_probs=87.7
Q ss_pred cchhHHHHHHHHHHHHhhc----------hHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRN----------FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH 286 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~----------y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~ 286 (435)
|....+-+..+.++...|+ |++|..+|.+++.+- +.. -.+.++-+.++..
T Consensus 60 P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--------pK~------------y~aW~hR~w~l~~ 119 (567)
T 1dce_A 60 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--------PKS------------YGTWHHRCWLLSR 119 (567)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--------TTC------------HHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--------CCC------------HHHHHHHHHHHHH
Confidence 3444555666667777777 999999999999881 111 1457788999999
Q ss_pred cC--CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh-hhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchh
Q 013867 287 MG--NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA-MQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 363 (435)
Q Consensus 287 qG--~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG-~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a 363 (435)
.| +|++|.+++.+++++ +|+-..+.++.+.++...| +++++ ...+.+++++ +|+-.
T Consensus 120 l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~e------l~~~~~~I~~-------~p~n~ 178 (567)
T 1dce_A 120 LPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEE------LAFTDSLITR-------NFSNY 178 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHH------HHHHHTTTTT-------TCCCH
T ss_pred cccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHH------HHHHHHHHHH-------CCCCc
Confidence 99 679999999999996 6888899999999999988 55443 4555555433 34445
Q ss_pred hhhccHHHHHHHh
Q 013867 364 TKVDRTDIVALAR 376 (435)
Q Consensus 364 ~~l~nla~~~~a~ 376 (435)
...++++.++...
T Consensus 179 saW~~r~~ll~~l 191 (567)
T 1dce_A 179 SSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhh
Confidence 5777888887764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.049 Score=55.17 Aligned_cols=66 Identities=9% Similarity=-0.032 Sum_probs=52.5
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l 296 (435)
+..+.+...++..+..+|++++|+..++||+++ . + . ..++.-+|.++...|++++|.+.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n-----~-s------------~~a~~llG~~~~~~G~~~eA~e~ 332 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---E-----M-S------------WLNYVLLGKVYEMKGMNREAADA 332 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---C-----C-C------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---C-----C-C------------HHHHHHHHHHHHHCCCHHHHHHH
Confidence 334455555666677789999999999999999 1 1 1 12456789999999999999999
Q ss_pred HHHHHHH
Q 013867 297 LTRTLTK 303 (435)
Q Consensus 297 ~~rAL~I 303 (435)
|.+|+.+
T Consensus 333 ~~~AlrL 339 (372)
T 3ly7_A 333 YLTAFNL 339 (372)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999987
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.007 Score=53.96 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAES-WRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp-~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
......-+||+++.++. +.+.+++++.+++..+... .| .....+++||..|++.|+|++|..++++++++.
T Consensus 30 ~~~~~~F~ya~~Lv~S~-~~~~~~~gI~lLe~ll~~~-------~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSK-YNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcC-------CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 35577889999998754 6678999999999999743 34 568899999999999999999999999997765
Q ss_pred hh
Q 013867 139 NS 140 (435)
Q Consensus 139 e~ 140 (435)
+.
T Consensus 102 P~ 103 (152)
T 1pc2_A 102 PQ 103 (152)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.028 Score=50.00 Aligned_cols=86 Identities=14% Similarity=0.041 Sum_probs=66.5
Q ss_pred hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhCC
Q 013867 234 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG---NFGDAEEILTRTLTKTEELFGS 310 (435)
Q Consensus 234 G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG---~y~eAe~l~~rAL~I~e~~lG~ 310 (435)
+....++.-|++.++. + + . +..+.+++|..+.+.. +++++..+++..+..
T Consensus 12 ~~l~~~~~~y~~e~~~-----~---~--~----------~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~------- 64 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-----G---S--V----------SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK------- 64 (152)
T ss_dssp HHHHHHHHHHHHHHHT-----T---C--C----------CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcc-----C---C--C----------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------
Confidence 4456677777777643 1 1 1 2357789999999988 667888888887764
Q ss_pred CCh-hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 311 HHP-KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 311 ~HP-~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.| +-...+.+||..|.+.|+|++| ..+++++|+|-
T Consensus 65 ~~p~~~rd~lY~LAv~~~kl~~Y~~A------~~y~~~lL~ie 101 (152)
T 1pc2_A 65 GSKEEQRDYVFYLAVGNYRLKEYEKA------LKYVRGLLQTE 101 (152)
T ss_dssp SCHHHHHHHHHHHHHHHHHTSCHHHH------HHHHHHHHHHC
T ss_pred CCccchHHHHHHHHHHHHHccCHHHH------HHHHHHHHhcC
Confidence 367 6789999999999999998877 78899999986
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.085 Score=55.00 Aligned_cols=155 Identities=8% Similarity=-0.071 Sum_probs=91.5
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhhhhhHHHHHHHH
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN---------YVEAIEKLQKVENFKNSILGVRVAAM 149 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGk---------y~eA~~l~~ral~i~e~~L~i~vaal 149 (435)
.|+.++|+.+|++..+.. + .|+ ..+++.|=.++...|+ .++|.++|++-.. + |+
T Consensus 39 ~G~~~~A~~lf~~M~~~G---v---~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~---~--G~----- 101 (501)
T 4g26_A 39 KGDVLEALRLYDEARRNG---V---QLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV---D--KV----- 101 (501)
T ss_dssp SCCHHHHHHHHHHHHHHT---C---CCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH---T--TC-----
T ss_pred CCCHHHHHHHHHHHHHcC---C---CCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH---h--CC-----
Confidence 589999999999987532 2 133 3457777667765544 6778777775321 1 11
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHH
Q 013867 150 EALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEY 229 (435)
Q Consensus 150 e~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~ 229 (435)
-|+. ..++.++..+.+.+. .++|..++..-+ .. |-. |+ ..+.+.+-..
T Consensus 102 ----------~Pd~---~tyn~lI~~~~~~g~--~~~A~~l~~~M~-------~~-g~~--------Pd-~~tyn~lI~~ 149 (501)
T 4g26_A 102 ----------VPNE---ATFTNGARLAVAKDD--PEMAFDMVKQMK-------AF-GIQ--------PR-LRSYGPALFG 149 (501)
T ss_dssp ----------CCCH---HHHHHHHHHHHHHTC--HHHHHHHHHHHH-------HT-TCC--------CC-HHHHHHHHHH
T ss_pred ----------CCCH---HHHHHHHHHHHhcCC--HHHHHHHHHHHH-------Hc-CCC--------Cc-cceehHHHHH
Confidence 2221 233444444444442 333333221111 11 211 21 1233445556
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
|...|+.++|..+|++..+- | +. |+. .+++.|=..|.+.|++++|+.+|++--
T Consensus 150 ~~~~g~~~~A~~l~~~M~~~-----G------~~-----Pd~---~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 150 FCRKGDADKAYEVDAHMVES-----E------VV-----PEE---PELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHT-----T------CC-----CCH---HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhc-----C------CC-----CCH---HHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 78999999999999886532 2 11 332 356777788999999999999999853
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.15 Score=46.06 Aligned_cols=104 Identities=13% Similarity=-0.044 Sum_probs=74.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~-va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
+..-..-+.+.|.|+.|+.+..-++.+.+.--..--|. -+.++..+|.++..+|.|.+| +..|++||.+.+..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA------~~~y~qALq~~k~l 96 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNA------VSKYTMALQQKKAL 96 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHH------HHHHHHHHHHHHHH
Confidence 44445667789999999999999999976422222333 378999999999999997666 89999999999853
Q ss_pred CCCC------------C---c---hhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 356 PLES------------E---G---VETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 356 ~~~h------------p---~---~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
.-.. | + -...-..++.++...|++.+|+..-
T Consensus 97 ~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~L 145 (167)
T 3ffl_A 97 SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAIL 145 (167)
T ss_dssp --------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 1110 0 0 0112235788888999999988865
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.16 Score=51.35 Aligned_cols=62 Identities=10% Similarity=0.073 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++.-+|.++..+|++++|...++||+.+. |+ +..+.-+|.+|.-.|++++| ...|.+|+.+.
T Consensus 279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln--------~s-~~a~~llG~~~~~~G~~~eA------~e~~~~AlrL~ 340 (372)
T 3ly7_A 279 IYQIKAVSALVKGKTDESYQAINTGIDLE--------MS-WLNYVLLGKVYEMKGMNREA------ADAYLTAFNLR 340 (372)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHCCCHHHH------HHHHHHHHhcC
Confidence 45567777888899999999999999993 44 56778999999999998877 89999999885
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.12 Score=51.90 Aligned_cols=123 Identities=7% Similarity=-0.123 Sum_probs=73.1
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcC-CHHHHHH
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG-NFGDAEE 295 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG-~y~eAe~ 295 (435)
+..-.+...+..++.+.+..++|..++.++|.+ . |++. .+.+.-+.++...| .++++..
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~-----------n-------P~~y--taWn~R~~iL~~l~~~l~eEL~ 110 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRM-----------N-------PAHY--TVWQYRFSLLTSLNKSLEDELR 110 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH-----------C-------TTCH--HHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-----------C-------chhH--HHHHHHHHHHHHhhhhHHHHHH
Confidence 444445555555666666667788888877777 0 1111 34566777777777 3777777
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHh-h-hhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHH
Q 013867 296 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK-A-MQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVA 373 (435)
Q Consensus 296 l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~q-G-~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~ 373 (435)
++.++|. .+|+.-.+.++.+.++... + +++++ ..++.++|++- |.-...-+++..+.
T Consensus 111 ~~~~~L~--------~nPKny~aW~hR~wlL~~l~~~~~~~E------L~~~~k~L~~d-------pkNy~AW~~R~wvl 169 (349)
T 3q7a_A 111 LMNEFAV--------QNLKSYQVWHHRLLLLDRISPQDPVSE------IEYIHGSLLPD-------PKNYHTWAYLHWLY 169 (349)
T ss_dssp HHHHHHH--------TTCCCHHHHHHHHHHHHHHCCSCCHHH------HHHHHHHTSSC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHH--------hCCCcHHHHHHHHHHHHHhcCCChHHH------HHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 7777763 5677777777777777766 5 44333 55555555432 22233444555555
Q ss_pred HHhcCHH
Q 013867 374 LARGGYA 380 (435)
Q Consensus 374 ~a~G~ya 380 (435)
...|+|.
T Consensus 170 ~~l~~~~ 176 (349)
T 3q7a_A 170 SHFSTLG 176 (349)
T ss_dssp HHHHHTT
T ss_pred HHhcccc
Confidence 5555554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.88 Score=45.08 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhh
Q 013867 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN--YVEAIEKLQKVENFKNS 140 (435)
Q Consensus 81 ~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGk--y~eA~~l~~ral~i~e~ 140 (435)
.|++++.+++++|.+ +|.--.+.+..+.++...|+ |+++++++.+++++..+
T Consensus 89 ~l~~EL~~~~~~L~~--------~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr 142 (331)
T 3dss_A 89 LVKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER 142 (331)
T ss_dssp HHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC
Confidence 388999999999964 46677888899999999995 99999999998765543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=95.66 E-value=0.9 Score=46.94 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhH
Q 013867 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL 142 (435)
Q Consensus 82 Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L 142 (435)
.++...+|++||... |.........+..+.++|+.++|...|++++.. +...
T Consensus 195 ~~Rv~~~ye~al~~~--------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~ 246 (493)
T 2uy1_A 195 ESRMHFIHNYILDSF--------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM 246 (493)
T ss_dssp HHHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred HHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence 556788999999654 233566667788899999999999999999887 6553
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.1 Score=55.58 Aligned_cols=118 Identities=18% Similarity=0.112 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKT-----EELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 350 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~-----e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~ 350 (435)
...+||..+..+|+++.|+.+|.++-... ....| .+ .-+..++.+...+|+++.| +.+|.+.
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~--~~---~~~~~~~~~a~~~~~~~~A------~~~~~~~-- 749 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFN--NK---EGLVTLAKDAETTGKFNLA------FNAYWIA-- 749 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT--CH---HHHHHHHHHHHHTTCHHHH------HHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcC--CH---HHHHHHHHHHHHcCchHHH------HHHHHHc--
Confidence 45789999999999999999999962221 11122 22 2244556666666665544 3333221
Q ss_pred HhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhh-hH---HHHHHHHHHHHhcccchhHHHHhcccC
Q 013867 351 FLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRK-DE---GERMKRWAEAAWRNRRVSLAEALNFSE 419 (435)
Q Consensus 351 I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~-~e---ae~~~~~a~~~~~~~r~~l~~~l~~~~ 419 (435)
+.++- .--+|...++|++|..+-.... .+ .+-+.+|+..+=..++...+++|..-|
T Consensus 750 -------g~~~~------a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a~~l~~~~ 809 (814)
T 3mkq_A 750 -------GDIQG------AKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVSERVCGAE 809 (814)
T ss_dssp -------TCHHH------HHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHHTTBCCGG
T ss_pred -------CCHHH------HHHHHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHHHhhCCcc
Confidence 11111 1123456678888877754332 22 355667998888888878888887443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.44 E-value=5 Score=40.96 Aligned_cols=218 Identities=12% Similarity=0.017 Sum_probs=126.3
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
.|++++|++-|..--+. ...+.+-+++-..+..+-.++.+.|+|+...+.+.--...+
T Consensus 29 ~~~~~~a~e~ll~lEK~--~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-------------------- 86 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKK--TRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-------------------- 86 (445)
T ss_dssp HHHHHHHHHHHHHHHHH--HSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT--------------------
T ss_pred cCCHHHHHHHHHHHHHH--hhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh--------------------
Confidence 46888888765322111 13568889999999999999999999998877554221110
Q ss_pred cCCCcch-HHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchH
Q 013867 159 LGQDDTS-SVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFL 237 (435)
Q Consensus 159 ~g~~~~A-~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~ 237 (435)
|+.-.+ ..+.+.+...+..... .+......-+ +++..- .+..-..+..-..+-..++.+|..+|+|.
T Consensus 87 -~qlk~ai~~~V~~~~~~l~~~~~------~d~~~~~~~i----~~l~~v-te~kiflE~erarl~~~La~i~e~~g~~~ 154 (445)
T 4b4t_P 87 -GQLKLSIQYMIQKVMEYLKSSKS------LDLNTRISVI----ETIRVV-TENKIFVEVERARVTKDLVEIKKEEGKID 154 (445)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHCT------THHHHHHHHH----HCCSSS-SSCCCCCCHHHHHHHHHHHHHHHHHTCHH
T ss_pred -hhhHHHHHHHHHHHHHHHhcCCc------hhHHHHHHHH----HHHHHH-hccchHHHHHHHHHHHHHHHHHHHccCHH
Confidence 111110 1112233333221110 0111111111 112110 00000111112234456789999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH-H
Q 013867 238 LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV-G 316 (435)
Q Consensus 238 eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~v-a 316 (435)
+|..+.+....- +.+ . | ....-+....-...+|...++|.+|..+++++....-. .+.||+. +
T Consensus 155 eA~~iL~~l~~E---t~~-----~-----~-~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~--~~~~~~lk~ 218 (445)
T 4b4t_P 155 EAADILCELQVE---TYG-----S-----M-EMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK--NPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHH---HCS-----S-----S-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--SSCCHHHHH
T ss_pred HHHHHHHHHHHH---HHh-----c-----c-cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc--cCCcHHHHH
Confidence 999998887633 443 1 1 11122344556788999999999999999998654333 3567774 6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 317 VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 317 ~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
..+..+|.++...++|.+| -..|..+.+..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a------~~~y~e~~~~~ 248 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEV------AQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHH------HHHHHHHHhcc
Confidence 7788999999999998776 34455554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=93.87 E-value=0.85 Score=47.14 Aligned_cols=37 Identities=11% Similarity=0.032 Sum_probs=26.0
Q ss_pred CChhc-HHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 77 KSDES-YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (435)
Q Consensus 77 ~s~G~-Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~ 136 (435)
+.+|. .+.|-.+|+++++.... |+++.++.+|++++.
T Consensus 5 ~~~~~~i~~aR~vyer~l~~~P~-----------------------~~~e~~~~iferal~ 42 (493)
T 2uy1_A 5 EKMGVELSSPSAIMEHARRLYMS-----------------------KDYRSLESLFGRCLK 42 (493)
T ss_dssp -------CCHHHHHHHHHHHHHT-----------------------TCHHHHHHHHHHHST
T ss_pred HHcCcchHHHHHHHHHHHHHCCC-----------------------CCHHHHHHHHHHHhc
Confidence 45674 88899999999877632 889999999999855
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=92.54 E-value=0.58 Score=47.61 Aligned_cols=100 Identities=13% Similarity=0.055 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCC
Q 013867 278 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPL 357 (435)
Q Consensus 278 ~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~ 357 (435)
..||.+|..+|+|.+|.+++.+.+.-..+. ++-.....++-.-..+|..++++.++ ..+|.+|..+.-+. +
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~------k~~l~~a~~~~~ai-~ 173 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKA------RAALTSARTTANAI-Y 173 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHS-C
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHH------HHHHHHHHhhhccC-C
Confidence 379999999999999999999988876553 33456788888899999999997666 78999999887542 3
Q ss_pred CCCchhhhhc-cHHHHHH-HhcCHHHHhhHh
Q 013867 358 ESEGVETKVD-RTDIVAL-ARGGYAEALSVQ 386 (435)
Q Consensus 358 ~hp~~a~~l~-nla~~~~-a~G~yaeal~~~ 386 (435)
.||.+-..++ --|+++. ..++|.+|...+
T Consensus 174 ~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 174 CPPKVQGALDLQSGILHAADERDFKTAFSYF 204 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHhhHHHHHhccCHHHHHHHH
Confidence 5665444444 4667777 799999997754
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.18 E-value=0.68 Score=39.77 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAES-WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp-~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
.....-+||+++.++. ....-.+++.+++..+.. +.| ..-..++.||..+++.|+|++|..+++..+.+-+
T Consensus 34 s~~~~F~yAw~Lv~S~-~~~d~~~GI~lLe~l~~~-------~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTR-YNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp CHHHHHHHHHHHTTSS-SHHHHHHHHHHHHHHTTT-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 3466779999998765 556677899999987753 224 5778899999999999999999999998865543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=91.52 E-value=3.9 Score=43.24 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=33.4
Q ss_pred HHHHcCCHHHHHHHHHH------HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhh
Q 013867 283 LEAHMGNFGDAEEILTR------TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQE 333 (435)
Q Consensus 283 ly~~qG~y~eAe~l~~r------AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e 333 (435)
+|..+|++++|+++|.+ |+.++++ +|+.+..+...+...+.-+..+|+++
T Consensus 745 ~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~-~~~~~~~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 745 AYWIAGDIQGAKDLLIKSQRFSEAAFLGST-YGLGDNEVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp HHHHHTCHHHHHHHHHHTTCHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHcCCHHHHHHHHHHcCChHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhccchh
Confidence 56667888888888754 4444443 56655557777777777777777643
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.48 E-value=1.1 Score=45.58 Aligned_cols=105 Identities=14% Similarity=0.059 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+...+|.+|...|+|++|...|.++.+-. -+ .+ + .+....++-.++...++|..+...+.+|.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~---~~------~~--~------kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKA---IS------TG--A------KIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHH---TC------CC--S------HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CC------hH--H------HHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45568999999999999999999987762 21 11 1 23455677788999999999999999997
Q ss_pred HHHHHhhCCCChhHHH-HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 302 TKTEELFGSHHPKVGV-VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~-~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.+.++ ..||+.-. .-..-|..+...++|.+| -.+|..++..+
T Consensus 196 ~~~~~---~~d~~~~~~lk~~~gl~~l~~r~f~~A------a~~f~e~~~t~ 238 (429)
T 4b4t_R 196 SMIEK---GGDWERRNRYKTYYGIHCLAVRNFKEA------AKLLVDSLATF 238 (429)
T ss_dssp HHHTT---CCCTHHHHHHHHHHHHGGGGTSCHHHH------HHHHHHHHHHS
T ss_pred Hhhhc---CCCHHHHHHHHHHHHHHHHHhChHHHH------HHHHHHHhccC
Confidence 77554 45676543 344455556677776655 45665554443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.47 E-value=0.61 Score=40.55 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAES-WRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp-~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
....-+||+++.++. ......+++.+++..+... | ..-..++.||.-+++.|+|++|..+.++.+.+-
T Consensus 40 ~qt~F~yAw~Lv~S~-~~~d~~~GI~LLe~l~~~~--------~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 40 IQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEA--------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp HHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHC--------GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcC--------cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 367789999998875 6678889999999988532 3 478889999999999999999999888876544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.65 E-value=0.77 Score=40.37 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 60 ~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
......-+||+++.++. ....-.+++.+++..+... ++ ..-..++.||.-+++.|+|++|..+.+..+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~-~~~di~~GI~LLe~l~~~~-----~~--~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEA-----ES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHC-----CS--THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcC-----cc--chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45667789999998876 6677889999999998632 11 47788999999999999999999988887554
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.03 E-value=1.2 Score=46.55 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
...+|.+.+=++.++.|..+|++|+.+ .|..| ...|-||.++..+|++-+|.-+|.|+|.
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~---------~P~~G-----------~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQL---------VPSNG-----------QPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTBS-----------HHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHh---------CCCCC-----------chHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 455677777788899999999999999 23444 3567899999999999999999999986
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHH
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRN 328 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~ 328 (435)
. .+| ...+..||..++..
T Consensus 215 ~-------~~P-f~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 215 V-------KFP-FPAASTNLQKALSK 232 (497)
T ss_dssp S-------SBC-CHHHHHHHHHHHHH
T ss_pred c-------CCC-ChhHHHHHHHHHHH
Confidence 4 333 34455555555543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.92 E-value=1.5 Score=44.53 Aligned_cols=97 Identities=16% Similarity=0.086 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 013867 277 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP 356 (435)
Q Consensus 277 l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~ 356 (435)
+..||..|.+.|+|++|.+.|.++. +.+.+..| ....+-++-.++-..+++..+ ...+.++-.+...
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~---~~~~~~~~--kid~~l~~irl~l~~~d~~~~------~~~~~ka~~~~~~-- 200 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSL---SKAISTGA--KIDVMLTIARLGFFYNDQLYV------KEKLEAVNSMIEK-- 200 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHH---HHHTCCCS--HHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---HhcCChHH--HHHHHHHHHHHHHHhccHHHH------HHHHHHHHHhhhc--
Confidence 4689999999999999999999964 56778776 677788888899999998766 7889999888753
Q ss_pred CCCCchhhhhc-cHHHHHHHhcCHHHHhhHh
Q 013867 357 LESEGVETKVD-RTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 357 ~~hp~~a~~l~-nla~~~~a~G~yaeal~~~ 386 (435)
.++|+.-..+. ..+++++..++|.+|...+
T Consensus 201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f 231 (429)
T 4b4t_R 201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLL 231 (429)
T ss_dssp CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 23454322222 3455667888898886544
|
| >4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.91 E-value=3.6 Score=32.74 Aligned_cols=62 Identities=10% Similarity=0.027 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHH
Q 013867 267 MALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF-GSHHPKVGVVLTCLALMFRN 328 (435)
Q Consensus 267 ~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~l-G~~HP~va~~L~nLA~ly~~ 328 (435)
|.|.......+..-|.-+...|+|++|..+|.+|++.+...+ ....|..-..+.....-|..
T Consensus 9 ~~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~ 71 (86)
T 4a5x_A 9 MDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMD 71 (86)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 445543434556778888999999999999999999988876 45566665555554444443
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.73 E-value=1.1 Score=46.91 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
++..||.+.+.++.++.|+.+|.+|+.+ .|+.+..+|-||.++..+|+.-+| .=.|-|+|..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a------~y~y~rsl~~ 215 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTT------IFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHH------HHHHHHHHSS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHH------HHHHHHHHhc
Confidence 6779999999999999999999999997 799999999999999999986554 6778888754
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=86.80 E-value=7.5 Score=33.17 Aligned_cols=90 Identities=14% Similarity=0.057 Sum_probs=67.2
Q ss_pred hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013867 233 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH 312 (435)
Q Consensus 233 ~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~H 312 (435)
......++.-|+++++. + + . +..+..++|..+.+..+-.+ -++.+.+.+.++-.++
T Consensus 14 ~~~l~~~~~~y~~e~~~-----~---~--~----------s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~ 69 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAA-----G---S--V----------SKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGS 69 (126)
T ss_dssp HHHHHHHHHHHHHHHHH-----S---C--C----------CHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHhcc-----C---C--C----------cHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCC
Confidence 44566677777777654 1 1 1 23577899999988776654 3467777777777777
Q ss_pred h-hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 313 P-KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 313 P-~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
| .--..+..||.-|.+.|+|++| ....++.|++-
T Consensus 70 p~~~Rd~lY~LAvg~yklg~Y~~A------~~~~~~lL~~e 104 (126)
T 1nzn_A 70 KEEQRDYVFYLAVGNYRLKEYEKA------LKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHhC
Confidence 8 7899999999999999998877 67788888775
|
| >2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C* | Back alignment and structure |
|---|
Probab=84.87 E-value=1.4 Score=41.68 Aligned_cols=54 Identities=11% Similarity=0.030 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 013867 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVEN 136 (435)
Q Consensus 83 ~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~-qGky~eA~~l~~ral~ 136 (435)
++|...|++|+.+....+.|.||-......|.+..|++ .|+-++|..+.++|.+
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57899999999999888999999999999999999887 7999999999999855
|
| >2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=84.57 E-value=2.1 Score=41.18 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 013867 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENF 137 (435)
Q Consensus 83 ~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~-qGky~eA~~l~~ral~i 137 (435)
++|...|++|+.+. ..+.|.||-......|.+..|++ .|+-++|..+.++|.+-
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 227 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM 227 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57899999999999 88999999999999999999887 79999999999998653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.22 E-value=16 Score=40.05 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 300 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rA 300 (435)
...--+.++.++|+|+-|.++-+||+.+. |.+ -.+...|+.+|..+|+|+.|.--+.-+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a------------------Pse--F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELA------------------LDS--FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------SSC--HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcC------------------chh--hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33444788889999999999999999881 222 246789999999999999998554443
|
| >1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A* | Back alignment and structure |
|---|
Probab=83.14 E-value=2 Score=41.30 Aligned_cols=54 Identities=11% Similarity=0.032 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 013867 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVEN 136 (435)
Q Consensus 83 ~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~-qGky~eA~~l~~ral~ 136 (435)
++|...|++|+.+....+.|.||-......|.+..|++ .|+-++|..+.++|++
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 47899999999999888999999999999999999887 6999999999999855
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=82.99 E-value=8.9 Score=38.20 Aligned_cols=109 Identities=19% Similarity=0.161 Sum_probs=79.6
Q ss_pred HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccc---cc-c-----chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 232 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC---NM-A-----LEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 232 ~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~---~~-~-----~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
..|+.++|...+++||+.+ .| + .+... .. . .++..+.++..++..+...|++++|...+++++.
T Consensus 127 ~~~~~~~a~~~l~~Al~L~---rG---~-~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~ 199 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREW---RG---P-VLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 199 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTC---CS---S-TTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhc---CC---C-CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4688999999999999994 44 1 22210 00 0 1233445666788899999999999999999876
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh-cCCCCCCCc
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL-KAPPLESEG 361 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~-k~~~~~hp~ 361 (435)
+ ||--=.....|-.+|...|+..+| ...|+++-..+ +.+|.+-..
T Consensus 200 ~--------~P~~E~~~~~lm~al~~~Gr~~~A------l~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 200 E--------HPYREPLWTQLITAYYLSDRQSDA------LGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp H--------STTCHHHHHHHHHHHHTTTCHHHH------HHHHHHHHHHHHHHHSCCCCH
T ss_pred h--------CCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHHHHHhCCCCCH
Confidence 5 666556777788889999997665 89999999988 456766443
|
| >2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1 | Back alignment and structure |
|---|
Probab=82.70 E-value=1.5 Score=41.33 Aligned_cols=60 Identities=8% Similarity=0.009 Sum_probs=52.4
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLY-ESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~-~qGky~eA~~l~~ral~i~ 138 (435)
.|.-++|...|++|+.+..+.+.|.||-......|.+..|+ -.++-++|..+.++|+++.
T Consensus 138 ~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 138 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 34478999999999999988899999999999999999866 4899999999999997653
|
| >2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C* | Back alignment and structure |
|---|
Probab=82.62 E-value=5.2 Score=37.78 Aligned_cols=66 Identities=8% Similarity=0.039 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH-HHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCC
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF-RNKAMQEHSSALLIQEGLYRRALEFLKAPPLE 358 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly-~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~ 358 (435)
++|...|++|++|.++-+.|.||--....-|.+..| .-.++.++| ..-|..-|..|++-+..+..+
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A--~~lAk~afd~Ai~eld~l~ee 213 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRA--CRLAKAAFDDAIAELDTLSEE 213 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH--HHHHHHHHHHHHHTGGGCCTT
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHhhhccChh
Confidence 468999999999999999999998655555555555 557888888 455666777777777655433
|
| >3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ... | Back alignment and structure |
|---|
Probab=82.60 E-value=2.1 Score=40.58 Aligned_cols=56 Identities=14% Similarity=0.072 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 013867 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENF 137 (435)
Q Consensus 82 Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~-qGky~eA~~l~~ral~i 137 (435)
-++|...|++|+.+..+.+.|.||-......|.+..|++ .++-++|..+.++|++-
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~ 205 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE 205 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 458899999999999889999999999999999999775 59999999999998653
|
| >3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A* | Back alignment and structure |
|---|
Probab=82.59 E-value=1.9 Score=41.09 Aligned_cols=56 Identities=13% Similarity=-0.027 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 013867 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENF 137 (435)
Q Consensus 82 Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~-qGky~eA~~l~~ral~i 137 (435)
-++|...|++|+.+..+.+.|.||-......|.+..|++ .++-++|..+.++|++-
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~ 203 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDD 203 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357899999999999888999999999999999999777 79999999999998653
|
| >3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.89 E-value=2.1 Score=41.11 Aligned_cols=55 Identities=11% Similarity=0.002 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 013867 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENF 137 (435)
Q Consensus 83 ~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~-qGky~eA~~l~~ral~i 137 (435)
++|...|++|+.+..+.+.|.||-......|.+..|++ .++-++|..+.++|++-
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~ 228 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 228 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57889999999999889999999999999999999887 69999999999998653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 435 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.83 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.82 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.8 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.78 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.73 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.68 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.61 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.48 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.45 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.45 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.44 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.34 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.31 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.29 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.27 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.26 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.23 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.21 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.16 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.16 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.14 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.13 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.12 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.11 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.1 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.05 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.02 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.01 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.01 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.01 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.01 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.0 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.98 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.95 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.93 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.93 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.9 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.88 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.85 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.82 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.79 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.7 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.54 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.5 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.46 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.39 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.37 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.32 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.19 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.77 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.72 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.94 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.65 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.51 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.39 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 83.78 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 83.71 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 83.29 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 81.04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.3e-18 Score=164.42 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 63 ~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
..+..+|..+.+ .|+|++|+.+|++++++. |..+.++.+||.+|..+|+|++|++.++++.....
T Consensus 34 ~~~~~la~~~~~----~~~~~~A~~~~~~al~~~--------p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 98 (388)
T d1w3ba_ 34 GVLLLLSSIHFQ----CRRLDRSAHFSTLAIKQN--------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98 (388)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHhhhhcccccccccccccccccc
Confidence 456777777743 579999999999999764 55677899999999999999999999988876543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.6e-18 Score=163.74 Aligned_cols=282 Identities=14% Similarity=0.099 Sum_probs=177.5
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
.|+|++|+.+|+++++.. |+-..++..||.+|..+|+|++|+..|++++.+.+.. ..++..++.++..
T Consensus 12 ~G~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~l~~~~~~ 79 (388)
T d1w3ba_ 12 AGDFEAAERHCMQLWRQE--------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL----AEAYSNLGNVYKE 79 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHhhh
Confidence 689999999999999654 4456788999999999999999999999998876544 2356677777888
Q ss_pred cCCCcchHHHHHHHHHHHHhcCC------------Cchhchhh--------------------------------HHHHH
Q 013867 159 LGQDDTSSVVADKCLQLCEKHKP------------ENYKTYGA--------------------------------VNSRA 194 (435)
Q Consensus 159 ~g~~~~A~~~~~~~~~l~~~~~~------------~~~~eaea--------------------------------l~~~a 194 (435)
+|.+..|......+......... ..+..... .....
T Consensus 80 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHH
Confidence 88887776655443332100000 00000000 00000
Q ss_pred HHHH------------HHHHHhcCCCccccc------ccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhccc
Q 013867 195 NAVK------------GLVELAHGNLESGLQ------EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDF 256 (435)
Q Consensus 195 ~Ai~------------~~~~~lgg~h~~a~~------~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~ 256 (435)
+.+. +......|+++.|.. ..+|....+...+|.++...|+|++|+..|++++.+. .
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~-- 234 (388)
T d1w3ba_ 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS---P-- 234 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC---T--
T ss_pred HhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh---h--
Confidence 0000 000001111111110 0124444555556666666666666666666666550 0
Q ss_pred CCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhh
Q 013867 257 SDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSS 336 (435)
Q Consensus 257 ~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~ 336 (435)
. ......++|.+|..+|++++|+..|++++++ +|+...++.++|.+|..+|++++|
T Consensus 235 ----~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A- 290 (388)
T d1w3ba_ 235 ----N-----------HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEA- 290 (388)
T ss_dssp ----T-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHH-
T ss_pred ----h-----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHH-
Confidence 0 1134567888888888888888888888875 456667788888888888887665
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhhhh----HHHHHHHHHHHHhcccchhHH
Q 013867 337 ALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKD----EGERMKRWAEAAWRNRRVSLA 412 (435)
Q Consensus 337 ~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r~~----eae~~~~~a~~~~~~~r~~l~ 412 (435)
+..|++++... |.......+++.++..+|+|++|+..+.+-.+ -++.+...+..+++.+++..|
T Consensus 291 -----~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 358 (388)
T d1w3ba_ 291 -----EDCYNTALRLC-------PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp -----HHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred -----HHHHHhhhccC-------CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 77787777654 33344566778888888888888877644222 256777788888888887765
Q ss_pred H
Q 013867 413 E 413 (435)
Q Consensus 413 ~ 413 (435)
.
T Consensus 359 ~ 359 (388)
T d1w3ba_ 359 L 359 (388)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=2.1e-17 Score=153.42 Aligned_cols=304 Identities=12% Similarity=-0.001 Sum_probs=212.1
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG--VRVAAMEALAGL 155 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~--i~vaale~L~g~ 155 (435)
.+|+|++|+.+|+++|..... .+++..+..++++|.+|..+|+|++|++.|++++.+..+.-. ....++.++...
T Consensus 24 ~~g~~~~A~~~~~~aL~~~~~---~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 24 NDGNPDEAERLAKLALEELPP---GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HTTCHHHHHHHHHHHHHTCCT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcC---CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 368999999999999987643 234556778999999999999999999999999887754321 123355677788
Q ss_pred HHhcCCCcchHHHHHHHHHHHHhcC-CCchhchhhHHHHHHHHHHHHHHhcCCCccccc-----------ccccchhHHH
Q 013867 156 YLQLGQDDTSSVVADKCLQLCEKHK-PENYKTYGAVNSRANAVKGLVELAHGNLESGLQ-----------EEEGCTGSAA 223 (435)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~l~~~~~-~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~-----------~~~~~~~~~a 223 (435)
+...|....+.......+.+..... +.... ........ ..+....|+++.+.. ........+.
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~--~~~~~~~l---a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPM--HEFLVRIR---AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH--HHHHHHHH---HHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhH--HHHHHHHH---HHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 8888988888877777777665443 21111 11111111 111122233322211 0112233455
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
...+.++...|++.+|...+.++..+..+.. . . +. ........+|.++..+|++++|..++++++.+
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~----~-~-------~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 242 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGK----Y-H-------SD-WISNANKVRVIYWQMTGDKAAAANWLRHTAKP 242 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC----C-C-------HH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc----c-c-------Cc-hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 5667889999999999999999999953211 0 1 11 12235678899999999999999999998875
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHHHHh
Q 013867 304 TEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEAL 383 (435)
Q Consensus 304 ~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~yaeal 383 (435)
...+++.......++|.+|..+|++++| ..++++++.+.+.. ..+|+....+.+++.++..+|++++|+
T Consensus 243 ----~~~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~ 311 (366)
T d1hz4a_ 243 ----EFANNHFLQGQWRNIARAQILLGEFEPA------EIVLEELNENARSL-RLMSDLNRNLLLLNQLYWQAGRKSDAQ 311 (366)
T ss_dssp ----CCTTCGGGHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ----ccccchHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHHhhc-ccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence 4566788889999999999999998776 89999999998653 456777888889999999999999998
Q ss_pred hHhhhhhh-------------HHHHHHHHHHHHhcccchhHHH
Q 013867 384 SVQQNRKD-------------EGERMKRWAEAAWRNRRVSLAE 413 (435)
Q Consensus 384 ~~~~~r~~-------------eae~~~~~a~~~~~~~r~~l~~ 413 (435)
.....-.. +++.+......+-..++++.++
T Consensus 312 ~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e 354 (366)
T d1hz4a_ 312 RVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 354 (366)
T ss_dssp HHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 87633222 2344444555555556655554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=4.3e-17 Score=154.34 Aligned_cols=231 Identities=12% Similarity=0.057 Sum_probs=162.8
Q ss_pred HHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHH
Q 013867 66 INYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR 145 (435)
Q Consensus 66 ~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~ 145 (435)
-+.|..+. ..|+|++|+.+|++++++. |.-+.++.+||.+|..+|+|++|+..|++++.+.+...
T Consensus 23 ~~~g~~~~----~~g~~~~A~~~~~~al~~~--------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--- 87 (323)
T d1fcha_ 23 FEEGLRRL----QEGDLPNAVLLFEAAVQQD--------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ--- 87 (323)
T ss_dssp HHHHHHHH----HTTCHHHHHHHHHHHHHSC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---
T ss_pred HHHHHHHH----HcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccc---
Confidence 46777774 3689999999999999654 55577899999999999999999999999988765543
Q ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCC------------------chhchhhHHHHHHHHHHHHHHhcCC
Q 013867 146 VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE------------------NYKTYGAVNSRANAVKGLVELAHGN 207 (435)
Q Consensus 146 vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~------------------~~~eaeal~~~a~Ai~~~~~~lgg~ 207 (435)
..+..++..+..+|....|......+..+....... .............++....+.+.-+
T Consensus 88 -~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 166 (323)
T d1fcha_ 88 -TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 166 (323)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -cccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 234566677788888877776665554332110000 0000000111112222111111111
Q ss_pred CcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc
Q 013867 208 LESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM 287 (435)
Q Consensus 208 h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q 287 (435)
|+ .....+..++|.++..+|+|++|+..|++++.+. |.. ..++.++|.+|..+
T Consensus 167 -p~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------p~~-----------~~~~~~lg~~~~~~ 219 (323)
T d1fcha_ 167 -PT------SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR---------PND-----------YLLWNKLGATLANG 219 (323)
T ss_dssp -TT------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTC-----------HHHHHHHHHHHHHT
T ss_pred -hc------ccccccchhhHHHHHHHHHHhhhhcccccccccc---------ccc-----------ccchhhhhhccccc
Confidence 00 1123556778999999999999999999999871 110 13578999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 288 GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 288 G~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
|+|++|...|++++++ .|+.+.++.+||.+|..+|++++| ...|++||++..
T Consensus 220 g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A------~~~~~~al~l~p 271 (323)
T d1fcha_ 220 NQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREA------VEHFLEALNMQR 271 (323)
T ss_dssp TCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHH--------hhccHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhCC
Confidence 9999999999999986 355566899999999999998876 899999999984
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.7e-16 Score=147.14 Aligned_cols=259 Identities=13% Similarity=0.110 Sum_probs=182.6
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
+..+..+..+|..+. ..|+|++|+..|++++.+.... ++++..+.++.+++.+|..+|++.+|++.+.+++.+.
T Consensus 48 ~~~~~a~~~lg~~~~----~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 121 (366)
T d1hz4a_ 48 YSRIVATSVLGEVLH----CKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 121 (366)
T ss_dssp HHHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334556777888874 3689999999999999988654 6778899999999999999999999999999998876
Q ss_pred hhhHHH----HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccc--
Q 013867 139 NSILGV----RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGL-- 212 (435)
Q Consensus 139 e~~L~i----~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~-- 212 (435)
...... .......++.++..+|....+......+......... ............ .....+++..+.
T Consensus 122 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~a~~~ 194 (366)
T d1hz4a_ 122 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP--QQQLQCLAMLIQ-----CSLARGDLDNARSQ 194 (366)
T ss_dssp HHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG--GGGHHHHHHHHH-----HHHHHTCHHHHHHH
T ss_pred HhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh--hhHHHHHHHHHH-----HHHhhhhHHHHHHH
Confidence 544221 1223345666777888877777666665555433221 111111111100 000111111100
Q ss_pred -----------cccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHH
Q 013867 213 -----------QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALG 281 (435)
Q Consensus 213 -----------~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa 281 (435)
....+....+....+.++...|++++|..+|++++.+ ... .+. .......+||
T Consensus 195 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~----------~~~~~~~~la 258 (366)
T d1hz4a_ 195 LNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP---EFA---NNH----------FLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC---CCT---TCG----------GGHHHHHHHH
T ss_pred HHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh---ccc---cch----------HHHHHHHHHH
Confidence 0011233344555678899999999999999999876 111 111 1234567899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 282 QLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 282 ~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
.+|..+|+|++|..+|++++.+.++. ..+|+.+.++.++|.+|..+|++++| +..|++||++.+.
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A------~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDA------QRVLLDALKLANR 323 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhc--ccChHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHhhh
Confidence 99999999999999999999998874 68899999999999999999998876 8999999999854
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=1.5e-15 Score=144.44 Aligned_cols=145 Identities=10% Similarity=0.050 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH-MGNFGDAEEILTRT 300 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~-qG~y~eAe~l~~rA 300 (435)
...++|.+|..+|+|++|+..|+++++|..+... . . ....++.++|.+|.. .|+|++|+++|++|
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~-----~--------~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A 144 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-----F--------R-RGANFKFELGEILENDLHDYAKAIDCYELA 144 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----H--------H-HHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc-----c--------h-hHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence 3445678899999999999999999999753211 1 1 123467899999866 59999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHhcCHH
Q 013867 301 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYA 380 (435)
Q Consensus 301 L~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~G~ya 380 (435)
+.+.++. .+.+..+.++.++|.+|..+|+|++| ...|++++.+....+..+..+...+.+.+++++..|++.
T Consensus 145 ~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 216 (290)
T d1qqea_ 145 GEWYAQD--QSVALSNKCFIKCADLKALDGQYIEA------SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV 216 (290)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhc--CchhhhhhHHHHHHHHHHHcChHHHH------HHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHH
Confidence 9999864 45577899999999999999998876 899999999986555555556666778899999999999
Q ss_pred HHhhHhhh
Q 013867 381 EALSVQQN 388 (435)
Q Consensus 381 eal~~~~~ 388 (435)
.|....++
T Consensus 217 ~A~~~~~~ 224 (290)
T d1qqea_ 217 AAARTLQE 224 (290)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHHH
Confidence 99776533
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=5.8e-14 Score=132.39 Aligned_cols=240 Identities=15% Similarity=0.093 Sum_probs=152.8
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
|..+..+.++|.++.. .|+|++|+..|++++++. |.....+.++|.+|..+|++++|++.|++++.+.
T Consensus 50 P~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 117 (323)
T d1fcha_ 50 PKHMEAWQYLGTTQAE----NEQELLAISALRRCLELK--------PDNQTALMALAVSFTNESLQRQACEILRDWLRYT 117 (323)
T ss_dssp TTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHH----cCChHHHHHHHHhhhccc--------cccccccccccccccccccccccccchhhHHHhc
Confidence 3345567888888843 689999999999999875 4456789999999999999999999999998765
Q ss_pred hhhHHHH-----------HHHHHHHHHHHH----------------hcCCCcchHHHHHHHHHHHHhcCCCchhchhhHH
Q 013867 139 NSILGVR-----------VAAMEALAGLYL----------------QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVN 191 (435)
Q Consensus 139 e~~L~i~-----------vaale~L~g~~~----------------~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~ 191 (435)
+...... ........+... ...|+..-..+......++...+. +++|..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~--~~~A~~-- 193 (323)
T d1fcha_ 118 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE--YDKAVD-- 193 (323)
T ss_dssp TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC--HHHHHH--
T ss_pred cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH--Hhhhhc--
Confidence 4321100 000000000000 111111000111111222222221 222211
Q ss_pred HHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchH
Q 013867 192 SRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE 271 (435)
Q Consensus 192 ~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~ 271 (435)
...+++. ..|....+...+|.+|..+|+|++|+..|++++++ . |++
T Consensus 194 ~~~~al~----------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~---------------p~~ 239 (323)
T d1fcha_ 194 CFTAALS----------------VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---Q---------------PGY 239 (323)
T ss_dssp HHHHHHH----------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C---------------TTC
T ss_pred ccccccc----------------cccccccchhhhhhcccccccchhHHHHHHHHHHH---h---------------hcc
Confidence 1222221 12445677788999999999999999999999988 1 111
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 013867 272 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP---KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRA 348 (435)
Q Consensus 272 ~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP---~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rA 348 (435)
..++.+||.+|..+|+|++|...|++||++..+..+..+. -......+|+.++..+|+.+.+ .....|.
T Consensus 240 --~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~------~~~~~~~ 311 (323)
T d1fcha_ 240 --IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY------GAADARD 311 (323)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH------HHHHTTC
T ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHhC
Confidence 1467899999999999999999999999998776554332 2345668899999999997765 6667777
Q ss_pred HHHh-cCCC
Q 013867 349 LEFL-KAPP 356 (435)
Q Consensus 349 L~I~-k~~~ 356 (435)
|+.+ +.+|
T Consensus 312 l~~l~~~~~ 320 (323)
T d1fcha_ 312 LSTLLTMFG 320 (323)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 7665 4444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=8.4e-15 Score=139.22 Aligned_cols=227 Identities=11% Similarity=0.011 Sum_probs=154.3
Q ss_pred hHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013867 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (435)
Q Consensus 59 ~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~ 138 (435)
+.-+....+.|..+. .+|+|++|+..|++++.+..+. .++++.+.+++++|.+|.++|+|++|++.|++++.+.
T Consensus 34 ~~Aa~~y~~aa~~y~----~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~ 107 (290)
T d1qqea_ 34 EEAADLCVQAATIYR----LRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF 107 (290)
T ss_dssp HHHHHHHHHHHHHHH----HTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HCcCHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHh
Confidence 445667777777763 3678888888888888887654 5667888888888888888888888888888875443
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccc
Q 013867 139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGC 218 (435)
Q Consensus 139 e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~ 218 (435)
... +....
T Consensus 108 ~~~------------------~~~~~------------------------------------------------------ 115 (290)
T d1qqea_ 108 THR------------------GQFRR------------------------------------------------------ 115 (290)
T ss_dssp HHT------------------TCHHH------------------------------------------------------
T ss_pred hhc------------------ccchh------------------------------------------------------
Confidence 211 11100
Q ss_pred hhHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013867 219 TGSAALSYGEYLHA-TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 297 (435)
Q Consensus 219 ~~~~a~~la~~~~~-~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~ 297 (435)
...+..++|.+|.. .|+|++|+.+|++|+++.+... .+ + ....++.++|.+|..+|+|++|..+|
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~----~~--------~--~~~~~~~~la~~~~~~g~y~~A~~~~ 181 (290)
T d1qqea_ 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ----SV--------A--LSNKCFIKCADLKALDGQYIEASDIY 181 (290)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT----CH--------H--HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC----ch--------h--hhhhHHHHHHHHHHHcChHHHHHHHH
Confidence 00123334555544 6999999999999999964321 10 1 12346789999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHH--
Q 013867 298 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA-- 375 (435)
Q Consensus 298 ~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a-- 375 (435)
++++.+.... +..++.+...+.+++.+|...|++++| ...+++++++...+. ++.. ...+.++..++..
T Consensus 182 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~d~~~A------~~~~~~~~~~~~~~~-~sre-~~~l~~l~~a~~~~d 252 (290)
T d1qqea_ 182 SKLIKSSMGN-RLSQWSLKDYFLKKGLCQLAATDAVAA------ARTLQEGQSEDPNFA-DSRE-SNFLKSLIDAVNEGD 252 (290)
T ss_dssp HHHHHTTSSC-TTTGGGHHHHHHHHHHHHHHTTCHHHH------HHHHHGGGCC-----------HHHHHHHHHHHHTTC
T ss_pred HHHHHhCccc-hhhhhhHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHhCCCcc-chHH-HHHHHHHHHHHHhcC
Confidence 9999987654 445677888899999999999998766 788888887764321 1111 2233333333332
Q ss_pred hcCHHHHhhHh
Q 013867 376 RGGYAEALSVQ 386 (435)
Q Consensus 376 ~G~yaeal~~~ 386 (435)
.+++.+|+..+
T Consensus 253 ~e~~~eai~~y 263 (290)
T d1qqea_ 253 SEQLSEHCKEF 263 (290)
T ss_dssp TTTHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34577777655
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=1.2e-12 Score=119.31 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=48.8
Q ss_pred CChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 77 KSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 77 ~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
...++++.|+.-+++.+.... ...+.-+..+.++|.+|..+|+|++|++.|++++.+.+
T Consensus 10 ~~~~~~e~al~~~~e~l~~~~----~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p 68 (259)
T d1xnfa_ 10 QPTLQQEVILARMEQILASRA----LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP 68 (259)
T ss_dssp CCCHHHHHHHHHHHHHHTSSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred cccHHHHHHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC
Confidence 456788999999999886543 23467899999999999999999999999999966543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.9e-12 Score=125.11 Aligned_cols=194 Identities=7% Similarity=-0.042 Sum_probs=138.8
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCc
Q 013867 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (435)
Q Consensus 104 Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~ 183 (435)
.|.-+..+++++.++.++++|++|++++++++.+.+... .++.+.+.++..++.+
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~----~a~~~r~~~l~~l~~~--------------------- 93 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY----TVWHFRRVLLKSLQKD--------------------- 93 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCC---------------------
T ss_pred CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCCh----HHHHHHHHHHHHhCcC---------------------
Confidence 477899999999999999999999999999977655442 1233333322222211
Q ss_pred hhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 013867 184 YKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLG 263 (435)
Q Consensus 184 ~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~ 263 (435)
++ +++....+++.. +|....+..++|.++..+|+|++|+.+|.+++++- +
T Consensus 94 ~~--eal~~~~~al~~----------------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d--------p---- 143 (315)
T d2h6fa1 94 LH--EEMNYITAIIEE----------------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD--------A---- 143 (315)
T ss_dssp HH--HHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------T----
T ss_pred HH--HHHHHHHHHHHH----------------HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh--------h----
Confidence 22 334444554442 24556778888889999999999999999999881 1
Q ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 013867 264 SCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEG 343 (435)
Q Consensus 264 ~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~ 343 (435)
+ ...+.+++|.+|..+|+|++|...|++++++ +|.-..+++|+|.++...+++.++..+.+|..
T Consensus 144 ------~--n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--------~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~ 207 (315)
T d2h6fa1 144 ------K--NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ 207 (315)
T ss_dssp ------T--CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHH
T ss_pred ------c--chHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--------CCccHHHHHHHHHHHHHccccchhhhhHHhHH
Confidence 1 1246789999999999999999999999987 67778889999999998888776655667778
Q ss_pred HHHHHHHHhcCCCCCCCchhhhhccHHHHHHH
Q 013867 344 LYRRALEFLKAPPLESEGVETKVDRTDIVALA 375 (435)
Q Consensus 344 Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a 375 (435)
.|.++|++. |+.....++++.++..
T Consensus 208 ~~~~al~~~-------P~~~~~~~~l~~ll~~ 232 (315)
T d2h6fa1 208 YTLEMIKLV-------PHNESAWNYLKGILQD 232 (315)
T ss_dssp HHHHHHHHS-------TTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhC-------CCchHHHHHHHHHHHh
Confidence 888887765 2223345556665543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.45 E-value=1.3e-12 Score=113.55 Aligned_cols=122 Identities=10% Similarity=0.045 Sum_probs=95.2
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013867 227 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 306 (435)
Q Consensus 227 a~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~ 306 (435)
|..+..+|+|++|+..|++||+|..+. ++..... .......+++|+|.+|..+|+|++|...|+++|.+..+
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~---~~~~~~~-----~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTM---PPEEAFD-----HAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTS---CTTSCCC-----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhh---hhhhhcc-----cchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 667889999999999999999995321 1111111 11112346789999999999999999999999999987
Q ss_pred hhC---CCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCch
Q 013867 307 LFG---SHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGV 362 (435)
Q Consensus 307 ~lG---~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~ 362 (435)
..- ..+|..+.+++|+|.+|..+|++++| ...|++|++|....+.+.+..
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA------~~~~~~Al~l~~~~~~~~~~~ 140 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEA------MPEFKKVVEMIEERKGETPGK 140 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHCCSCCTTH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHH------HHHHHHHHHhhHHhhchHHHH
Confidence 644 55778889999999999999998877 899999999996544444443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.2e-11 Score=119.26 Aligned_cols=204 Identities=7% Similarity=-0.006 Sum_probs=151.7
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN-YVEAIEKLQKVEN 136 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGk-y~eA~~l~~ral~ 136 (435)
-|+-+..|.+++..+.+ +++|++|+.+|++++++. |.-.+.++++|.++...|+ |++|+..+++++.
T Consensus 39 ~p~~~~a~~~~~~~~~~----~e~~~~Al~~~~~ai~ln--------P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~ 106 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQR----DERSERAFKLTRDAIELN--------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE 106 (315)
T ss_dssp CHHHHHHHHHHHHHHHH----TCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh----CCchHHHHHHHHHHHHHC--------CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 47889999999999853 578999999999999876 5667889999999999875 9999999999977
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccc
Q 013867 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEE 216 (435)
Q Consensus 137 i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~ 216 (435)
+..+... ++.+++.++..+|. ++ +++....++|.. +
T Consensus 107 ~~p~~~~----a~~~~~~~~~~l~~----------------------~~--eAl~~~~kal~~----------------d 142 (315)
T d2h6fa1 107 EQPKNYQ----VWHHRRVLVEWLRD----------------------PS--QELEFIADILNQ----------------D 142 (315)
T ss_dssp HCTTCHH----HHHHHHHHHHHHTC----------------------CT--THHHHHHHHHHH----------------C
T ss_pred HHHhhhh----HHHHHhHHHHhhcc----------------------HH--HHHHHHhhhhhh----------------h
Confidence 6544421 23333333333333 33 334445555542 1
Q ss_pred cchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCH------
Q 013867 217 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF------ 290 (435)
Q Consensus 217 ~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y------ 290 (435)
|....+..++|.++...|+|++|+..|+++|++ . + . ...+++++|.++...|++
T Consensus 143 p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~-----p-~-----------n~~a~~~r~~~l~~~~~~~~~~~~ 202 (315)
T d2h6fa1 143 AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---D-----V-R-----------NNSVWNQRYFVISNTTGYNDRAVL 202 (315)
T ss_dssp TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---C-----T-T-----------CHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---C-----C-c-----------cHHHHHHHHHHHHHccccchhhhh
Confidence 445567788999999999999999999999998 1 1 1 124689999999988884
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++|...|.+|+.+ +|+-..++++++.++...|. ++ +...+.+++++.
T Consensus 203 ~~ai~~~~~al~~--------~P~~~~~~~~l~~ll~~~~~-~~------~~~~~~~~~~l~ 249 (315)
T d2h6fa1 203 EREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGL-SK------YPNLLNQLLDLQ 249 (315)
T ss_dssp HHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCG-GG------CHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHh--------CCCchHHHHHHHHHHHhcCh-HH------HHHHHHHHHHhC
Confidence 6777777777765 56667889999999887653 33 478899998875
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=6.5e-11 Score=107.51 Aligned_cols=206 Identities=11% Similarity=-0.020 Sum_probs=126.0
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
-+.-|....++|..+.+ .|+|++|+..|+++|.+. |+-+.++++||.+|..+|+|++|++.|++++.+
T Consensus 33 ~~~~a~~~~~~G~~y~~----~g~~~~A~~~~~~al~l~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 100 (259)
T d1xnfa_ 33 DDERAQLLYERGVLYDS----LGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 100 (259)
T ss_dssp HHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHhhccC--------CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH
Confidence 35677788899999853 689999999999999875 445678999999999999999999999999776
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCccccccccc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEG 217 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~ 217 (435)
.+.... ++.+++.++..+|+ +.+ ++..+.+++.. . |
T Consensus 101 ~p~~~~----a~~~lg~~~~~~g~----------------------~~~--A~~~~~~al~~-----~-----------p 136 (259)
T d1xnfa_ 101 DPTYNY----AHLNRGIALYYGGR----------------------DKL--AQDDLLAFYQD-----D-----------P 136 (259)
T ss_dssp CTTCTH----HHHHHHHHHHHTTC----------------------HHH--HHHHHHHHHHH-----C-----------T
T ss_pred Hhhhhh----hHHHHHHHHHHHhh----------------------HHH--HHHHHHHHHhh-----c-----------c
Confidence 543211 12222222322222 332 23334444432 1 1
Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHH-HHHHHHHHHcCCHHHHHHH
Q 013867 218 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT-FALGQLEAHMGNFGDAEEI 296 (435)
Q Consensus 218 ~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l-~nLa~ly~~qG~y~eAe~l 296 (435)
........++..+...+..+.+..+.+..... .....+ .... ..++. ....+.+++++..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~ 197 (259)
T d1xnfa_ 137 NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--------DKEQWG----------WNIVEFYLGN-ISEQTLMERLKAD 197 (259)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--------CCCSTH----------HHHHHHHTTS-SCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--------chhhhh----------hhHHHHHHHH-HHHHHHHHHHHHH
Confidence 11223333444455566555555554443332 111111 0111 11111 1234445666666
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 297 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 297 ~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+.+++.+ +|+...++.+||.+|..+|++++| ...|++||...
T Consensus 198 ~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~ 239 (259)
T d1xnfa_ 198 ATDNTSL--------AEHLSETNFYLGKYYLSLGDLDSA------TALFKLAVANN 239 (259)
T ss_dssp CCSHHHH--------HHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTTC
T ss_pred HHHhhhc--------CcccHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHcC
Confidence 6655555 366788899999999999998877 89999998653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.31 E-value=3.6e-11 Score=104.13 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=107.0
Q ss_pred hHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCc
Q 013867 106 WRGISLLAM--STLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (435)
Q Consensus 106 ~~A~~l~nL--a~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~ 183 (435)
+++.++.+| |..+..+|+|++|++.|+++++|.+.. + +.... .
T Consensus 5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~------------------~-~~~~~----------------~ 49 (156)
T d2hr2a1 5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM------------------P-PEEAF----------------D 49 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS------------------C-TTSCC----------------C
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhh------------------h-hhhhc----------------c
Confidence 578888887 778999999999999999997765332 1 10000 0
Q ss_pred hhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 013867 184 YKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLG 263 (435)
Q Consensus 184 ~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~ 263 (435)
. . +....+.+++|.+|..+|+|++|...|+++|.+..+... ..+...
T Consensus 50 ~---~----------------------------~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~--~~~~~~ 96 (156)
T d2hr2a1 50 H---A----------------------------GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE--LNQDEG 96 (156)
T ss_dssp H---H----------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC--TTSTHH
T ss_pred c---c----------------------------hhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccc--cccccc
Confidence 0 0 001123456788899999999999999999999754322 111111
Q ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh
Q 013867 264 SCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA 330 (435)
Q Consensus 264 ~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG 330 (435)
+ ....+++|+|.+|..+|+|++|.+.|++|++|..+..| +.+.....+..++.-+...|
T Consensus 97 -----~--~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~-~~~~~~~~~~~~~~~l~~lg 155 (156)
T d2hr2a1 97 -----K--LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG-ETPGKERMMEVAIDRIAQLG 155 (156)
T ss_dssp -----H--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS-CCTTHHHHHHHHHHHHHHHH
T ss_pred -----c--hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc-hHHHHHHHHHHHHHHHHHcC
Confidence 1 12346789999999999999999999999999988776 56777777777777666544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1e-12 Score=134.84 Aligned_cols=214 Identities=11% Similarity=-0.034 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHhcCCC
Q 013867 84 QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV-RVAAMEALAGLYLQLGQD 162 (435)
Q Consensus 84 eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i-~vaale~L~g~~~~~g~~ 162 (435)
||++.|+||+.+. |+.+.+++++|.+|..+|++.+| |++++.+....-.. .+. ..+. ..+ +
T Consensus 4 eA~q~~~qA~~l~--------p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e---~~Lw---~~~-y 65 (497)
T d1ya0a1 4 QSAQYLRQAEVLK--------ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVE---QDLW---NHA-F 65 (497)
T ss_dssp HHHHHHHHHHHHH--------GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHH---HHHH---HHH-T
T ss_pred HHHHHHHHHHHcC--------CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHH---HHHH---HHH-H
Confidence 8999999999876 56677788999999999999987 88876543221100 000 0000 000 0
Q ss_pred cchHHHHHHHHHHHHhcCC----Cchhch---------hhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHH
Q 013867 163 DTSSVVADKCLQLCEKHKP----ENYKTY---------GAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEY 229 (435)
Q Consensus 163 ~~A~~~~~~~~~l~~~~~~----~~~~ea---------eal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~ 229 (435)
.+..+.+....+ ...... ++...+..+|..+.+..+- ++.......++|.+
T Consensus 66 -------~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l---------~~~~~~~~~~lg~~ 129 (497)
T d1ya0a1 66 -------KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV---------DLPCRVKSSQLGII 129 (497)
T ss_dssp -------HHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------
T ss_pred -------HHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------ChhhHHHHHHhHHH
Confidence 011111111100 000000 1122222333221111111 13334455677888
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG 309 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG 309 (435)
+..+|++++|...|++++.+. + -.++.+||.++..+|+|++|+..|++|+.+
T Consensus 130 ~~~~~~~~~A~~~~~~al~~~------------------~----~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l------ 181 (497)
T d1ya0a1 130 SNKQTHTSAIVKPQSSSCSYI------------------C----QHCLVHLGDIARYRNQTSQAESYYRHAAQL------ 181 (497)
T ss_dssp -------------CCHHHHHH------------------H----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHhCCCHHHHHHHHHHHhCCC------------------H----HHHHHHHHHHHHHcccHHHHHHHHHHHHHH------
Confidence 999999999999999998772 1 146789999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHH
Q 013867 310 SHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVAL 374 (435)
Q Consensus 310 ~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~ 374 (435)
.|+.+.++++||.+|..+|++.+| ...|.|||.+.. +.....+|+..++.
T Consensus 182 --~P~~~~~~~~Lg~~~~~~~~~~~A------~~~y~ral~~~~-------~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 182 --VPSNGQPYNQLAILASSKGDHLTT------IFYYCRSIAVKF-------PFPAASTNLQKALS 231 (497)
T ss_dssp --CTTBSHHHHHHHHHHHHTTCHHHH------HHHHHHHHSSSB-------CCHHHHHHHHHHHH
T ss_pred --CCCchHHHHHHHHHHHHcCCHHHH------HHHHHHHHhCCC-------CCHHHHHHHHHHHH
Confidence 699999999999999999998766 788999987651 22335556665554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=2.2e-11 Score=106.88 Aligned_cols=97 Identities=14% Similarity=0.005 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
.-..|..|..+|+|++|+.+|++||++ ++ . ....++|+|.+|..+|+|++|+..|++|+.
T Consensus 7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p-~-----------~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~ 66 (201)
T d2c2la1 7 LKEQGNRLFVGRKYPEAAACYGRAITR--------NP-L-----------VAVYYTNRALCYLKMQQPEQALADCRRALE 66 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CS-C-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC-C-----------CHHHHHhHHHHHhhhhhhhhhhHHHHHHHH
Confidence 345678899999999999999999999 11 1 124678999999999999999999999998
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
+ .|+...++.+||.+|..+|+|++| ...|++|+++..
T Consensus 67 l--------~p~~~~a~~~lg~~~~~l~~~~~A------~~~~~~al~l~p 103 (201)
T d2c2la1 67 L--------DGQSVKAHFFLGQCQLEMESYDEA------IANLQRAYSLAK 103 (201)
T ss_dssp S--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHH
T ss_pred h--------CCCcHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhCc
Confidence 7 577788999999999999998877 899999999973
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=3.2e-11 Score=108.48 Aligned_cols=105 Identities=21% Similarity=0.218 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
+..++|.+|..+|+|++|+..|++||++ ++ .. ..+++|+|.+|..+|+|++|...|++|+
T Consensus 38 ~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp-~~-----------~~a~~~~g~~~~~~g~~~~A~~~~~kAl 97 (192)
T d1hh8a_ 38 ICFNIGCMYTILKNMTEAEKAFTRSINR--------DK-HL-----------AVAYFQRGMLYYQTEKYDLAIKDLKEAL 97 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT-TC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHH--------hh-hh-----------hhhHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3456788899999999999999999998 11 11 2467899999999999999999999999
Q ss_pred HHHH-------HhhCCCC-hhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 302 TKTE-------ELFGSHH-PKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 302 ~I~e-------~~lG~~H-P~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
...+ ..+|... +....++.|+|.+|..+|++++| +..|++|+.+.
T Consensus 98 ~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A------~~~l~~A~~~~ 150 (192)
T d1hh8a_ 98 IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA------EEQLALATSMK 150 (192)
T ss_dssp HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTTC
T ss_pred HhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHH------HHHHHHHHhcC
Confidence 7522 2233332 34578899999999999998877 78888888776
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=6.2e-11 Score=99.61 Aligned_cols=102 Identities=12% Similarity=0.138 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
-++|..+..+|+|++|+.+|++||++- + + ...++.|+|.+|..+|+|++|.+.|++|+++
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~--------p----------~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 67 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD--------P----------T--NMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--------T----------T--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--------c----------c--cHHHHHhHHHHHHHcCchHHHHHHHHHHHHh
Confidence 346778899999999999999999981 1 1 1246889999999999999999999999999
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 304 TEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 304 ~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
..+.. ..|+..+.++.++|.++..++++++| ...|++++.+.
T Consensus 68 ~~~~~-~~~~~~a~~~~~lg~~~~~~~~~~~A------~~~~~kal~~~ 109 (128)
T d1elra_ 68 GRENR-EDYRQIAKAYARIGNSYFKEEKYKDA------IHFYNKSLAEH 109 (128)
T ss_dssp HHHST-TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC
T ss_pred CcccH-HHHHHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHhcC
Confidence 77654 55788999999999999999998776 88999998764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=5.5e-11 Score=104.76 Aligned_cols=127 Identities=12% Similarity=0.113 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccc-ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS-CNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~-~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
....|..+..+|+|++|+.+|++||.+...... ... .......+...+++|+|.+|.++|+|++|+..+++||
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~------~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al 89 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESS------FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 89 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC------CCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc------cchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence 344577889999999999999999999432111 110 0001122334566899999999999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHHh
Q 013867 302 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 376 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a~ 376 (435)
.+ +|.-..++.++|.+|..+|+|++| ...|++|+++- |+++.+. ..++.+....
T Consensus 90 ~~--------~p~~~~a~~~~g~~~~~~g~~~~A------~~~~~~al~l~----P~n~~~~---~~l~~~~~~~ 143 (170)
T d1p5qa1 90 EL--------DSNNEKGLSRRGEAHLAVNDFELA------RADFQKVLQLY----PNNKAAK---TQLAVCQQRI 143 (170)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----SSCHHHH---HHHHHHHHHH
T ss_pred hc--------cccchhhhHHHHHHHHHhhhHHHH------HHHHHHHHHhC----CCCHHHH---HHHHHHHHHH
Confidence 98 566677899999999999998877 89999999975 4555543 3344554443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.1e-09 Score=96.18 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhc
Q 013867 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT 186 (435)
Q Consensus 107 ~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~e 186 (435)
.|..+.+.|+.|+.+|+|++|+..|++++.+.+.. .. ..+
T Consensus 12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~-------------------~~---------------------~~~ 51 (170)
T d1p5qa1 12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYE-------------------SS---------------------FSN 51 (170)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC-------------------CC---------------------CCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc-------------------cc---------------------cch
Confidence 57788899999999999999999999986543211 00 000
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q 013867 187 YGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN 266 (435)
Q Consensus 187 aeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~ 266 (435)
........+. ..+.+++|.+|..+|+|++|+.++++||.+ ++
T Consensus 52 --~~~~~~~~~~---------------------~~~~~nla~~y~k~~~~~~A~~~~~~al~~--------~p------- 93 (170)
T d1p5qa1 52 --EEAQKAQALR---------------------LASHLNLAMCHLKLQAFSAAIESCNKALEL--------DS------- 93 (170)
T ss_dssp --HHHHHHHHHH---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT-------
T ss_pred --HHHhhhchhH---------------------HHHHHHHHHHHHhhhhcccccchhhhhhhc--------cc-------
Confidence 0000111111 123456888999999999999999999999 11
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 013867 267 MALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYR 346 (435)
Q Consensus 267 ~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~ 346 (435)
+ .+.++.++|.+|..+|+|++|...|++|+.+ .|+||.+ ...++.++..+.++.+. ...+|.
T Consensus 94 ---~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-----~P~n~~~---~~~l~~~~~~~~~~~~~-----e~~~~~ 155 (170)
T d1p5qa1 94 ---N--NEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNKAA---KTQLAVCQQRIRRQLAR-----EKKLYA 155 (170)
T ss_dssp ---T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHH---HHHHHHHHHHHHHHHHH-----HHHHHH
T ss_pred ---c--chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 1 1357899999999999999999999999996 5677776 44566666666555433 124455
Q ss_pred HHHHHh
Q 013867 347 RALEFL 352 (435)
Q Consensus 347 rAL~I~ 352 (435)
+.++..
T Consensus 156 ~~f~~~ 161 (170)
T d1p5qa1 156 NMFERL 161 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=7.2e-11 Score=106.11 Aligned_cols=125 Identities=13% Similarity=0.126 Sum_probs=98.0
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 225 ~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
+-|..+..+|+|++|...|.+ | . ++. ...++|||.+|..+|+|++|+..|++|+++
T Consensus 10 ~~g~~~~~~~d~~~Al~~~~~---i----~----~~~------------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l- 65 (192)
T d1hh8a_ 10 NEGVLAADKKDWKGALDAFSA---V----Q----DPH------------SRICFNIGCMYTILKNMTEAEKAFTRSINR- 65 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT---S----S----SCC------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHCCCHHHHHHHHHh---c----C----CCC------------HHHHHHHHHHHHHcCCchhHHHHHHHHHHH-
Confidence 447778899999999998864 2 1 111 135789999999999999999999999987
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC--------CCCC-CchhhhhccHHHHHHH
Q 013867 305 EELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP--------PLES-EGVETKVDRTDIVALA 375 (435)
Q Consensus 305 e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~--------~~~h-p~~a~~l~nla~~~~a 375 (435)
.|+.+.+++|+|.+|..+|+|++| ...|++|+...+.. +... ......+.|++.++..
T Consensus 66 -------dp~~~~a~~~~g~~~~~~g~~~~A------~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~ 132 (192)
T d1hh8a_ 66 -------DKHLAVAYFQRGMLYYQTEKYDLA------IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 132 (192)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred -------hhhhhhhHHHHHHHHHhhccHHHH------HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHH
Confidence 366788999999999999998877 88899999876421 2111 1234567799999999
Q ss_pred hcCHHHHhhHh
Q 013867 376 RGGYAEALSVQ 386 (435)
Q Consensus 376 ~G~yaeal~~~ 386 (435)
+|+|.+|+...
T Consensus 133 ~~~~~~A~~~l 143 (192)
T d1hh8a_ 133 KEEWKKAEEQL 143 (192)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99999887754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.14 E-value=2.6e-10 Score=93.62 Aligned_cols=93 Identities=22% Similarity=0.082 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
....|..+..+|+|++|+.+|++++.+. |+ ...++++||.+|..+|++++|+..|++|++
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------p~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 78 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE------------------PE--REEAWRSLGLTQAENEKDGLAIIALNHARM 78 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccc------------------cc--cchhhhhhhhhhhhhhhHHHhhcccccccc
Confidence 3557888999999999999999999881 11 125788999999999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRAL 349 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL 349 (435)
+ +|+-..++.+||.+|..+|++++| ...++|.|
T Consensus 79 ~--------~p~~~~a~~~la~~y~~~g~~~~A------~~~l~~~l 111 (112)
T d1hxia_ 79 L--------DPKDIAVHAALAVSHTNEHNANAA------LASLRAWL 111 (112)
T ss_dssp H--------CTTCHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_pred c--------ccccccchHHHHHHHHHCCCHHHH------HHHHHHHh
Confidence 8 677888999999999999998776 78888876
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.13 E-value=1.6e-10 Score=101.21 Aligned_cols=110 Identities=17% Similarity=0.081 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 303 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I 303 (435)
...|..+...|+|++|..+|++||.+...... .........+.+.+..++|+|.+|..+|+|++|...++++|.+
T Consensus 19 ~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~-----~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l 93 (168)
T d1kt1a1 19 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYG-----LSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 93 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS-----CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc-----cchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence 34577788999999999999999999632111 1000001123344456789999999999999999999999987
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 304 TEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 304 ~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+|.-..++.++|.+|..+|+|++| +..|++++++-
T Consensus 94 --------~p~~~~a~~~~~~~~~~l~~~~~A------~~~~~~al~l~ 128 (168)
T d1kt1a1 94 --------DSANEKGLYRRGEAQLLMNEFESA------KGDFEKVLEVN 128 (168)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHSC
T ss_pred --------ccchHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 677778999999999999998876 89999999874
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=2.3e-10 Score=94.50 Aligned_cols=103 Identities=16% Similarity=0.074 Sum_probs=84.0
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 225 ~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
.-|..+..+|+|++|+.+|+++|.+- + . ....++++|.+|..+|+|++|+..|++++.+.
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~--------p-~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 67 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD--------P-H-----------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 67 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--------T-T-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--------C-c-----------chhhhhcccccccccccccccchhhhhHHHhc
Confidence 34677889999999999999999881 1 1 11467899999999999999999999999873
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhh
Q 013867 305 EELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETK 365 (435)
Q Consensus 305 e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~ 365 (435)
|+....+.++|.+|..+|++++| +..|++++++. |++|++...
T Consensus 68 --------p~~~~~~~~~g~~~~~~~~~~~A------~~~~~~a~~~~----p~~~~~~~~ 110 (117)
T d1elwa_ 68 --------PDWGKGYSRKAAALEFLNRFEEA------KRTYEEGLKHE----ANNPQLKEG 110 (117)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTTC----TTCHHHHHH
T ss_pred --------cchhhHHHHHHHHHHHccCHHHH------HHHHHHHHHhC----CCCHHHHHH
Confidence 45556899999999999998876 89999999764 556654433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=7.7e-10 Score=95.35 Aligned_cols=94 Identities=14% Similarity=-0.015 Sum_probs=80.9
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013867 225 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 304 (435)
Q Consensus 225 ~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~ 304 (435)
..|..|..+|+|++|+.+|++|+++- |. ....++++|.+|..+|++++|+..|++||++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~---------p~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~- 73 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN---------PS-----------NAIYYGNRSLAYLRTECYGYALGDATRAIEL- 73 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS---------TT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc---------hh-----------hhhhhhhhHHHHHhccccchHHHHHHHHHHH-
Confidence 34677889999999999999999981 11 1246789999999999999999999999998
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 305 EELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 305 e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.|....++.++|.+|..+|++++| ...|++++.+.
T Consensus 74 -------~p~~~~a~~~~g~~~~~~g~~~eA------~~~~~~a~~~~ 108 (159)
T d1a17a_ 74 -------DKKYIKGYYRRAASNMALGKFRAA------LRDYETVVKVK 108 (159)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS
T ss_pred -------cccchHHHHHHHHHHHHcCCHHHH------HHHHHHHHHcC
Confidence 466677899999999999998876 88999999884
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2.1e-10 Score=96.33 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
..-++|..|..+|+|++|+.+|++||.+ +|+...++.|+|.+|..+|+|++| ...|++||++....
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A------~~~~~~al~l~~~~ 71 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKC------RELCEKAIEVGREN 71 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHH------HHHHHHHHHhCccc
Confidence 4568999999999999999999999987 666778999999999999998877 89999999998655
Q ss_pred CCCCCchhhhhccHHHHHHHhcCHHHHhhHhhhh
Q 013867 356 PLESEGVETKVDRTDIVALARGGYAEALSVQQNR 389 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~r 389 (435)
...++..+..+.+++.++.+.++|.+|+..+++.
T Consensus 72 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5666778889999999999999999999987543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.05 E-value=6.6e-09 Score=90.64 Aligned_cols=137 Identities=15% Similarity=0.196 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchhc
Q 013867 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT 186 (435)
Q Consensus 107 ~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~e 186 (435)
.+..+...|..+++.|+|.+|+..|++++.+.+... ... ..
T Consensus 14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~-----------------~~~---------------------~~- 54 (168)
T d1kt1a1 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEY-----------------GLS---------------------EK- 54 (168)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC-----------------SCC---------------------HH-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-----------------ccc---------------------hh-
Confidence 466788899999999999999999999865432110 000 00
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q 013867 187 YGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN 266 (435)
Q Consensus 187 aeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~ 266 (435)
. ..... +....+.+|+|.+|..+|+|++|+.+|+++|.+ ++
T Consensus 55 ---~---~~~~~------------------~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l--------~p------- 95 (168)
T d1kt1a1 55 ---E---SKASE------------------SFLLAAFLNLAMCYLKLREYTKAVECCDKALGL--------DS------- 95 (168)
T ss_dssp ---H---HHHHH------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT-------
T ss_pred ---h---hhhcc------------------hhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc--------cc-------
Confidence 0 00000 001134557889999999999999999999988 11
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhh
Q 013867 267 MALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH 334 (435)
Q Consensus 267 ~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~ 334 (435)
. ...++.++|.+|..+|+|++|+..|++++.+ .|++ ..+...++.+....+++.+
T Consensus 96 ---~--~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l-----~P~n---~~~~~~l~~~~~~~~~~~e 150 (168)
T d1kt1a1 96 ---A--NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-----NPQN---KAARLQIFMCQKKAKEHNE 150 (168)
T ss_dssp ---T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTC---HHHHHHHHHHHHHHHHHHH
T ss_pred ---c--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHhHHH
Confidence 1 1257899999999999999999999999986 3444 5567777777777666644
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.02 E-value=7.4e-10 Score=95.65 Aligned_cols=109 Identities=9% Similarity=0.053 Sum_probs=84.1
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
-|..+..+|+|.+|+..|++||.+...... ......... ...+.+.+.+|+|.+|..+|+|++|...|++||.+
T Consensus 23 ~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~--~~~~~~~~~--~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~-- 96 (153)
T d2fbna1 23 EGNEFFKKNEINEAIVKYKEALDFFIHTEE--WDDQILLDK--KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-- 96 (153)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTT--CCCHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcchhh--hhhHHHHHh--hhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc--
Confidence 356678899999999999999998532221 000000000 11123456789999999999999999999999987
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+|.-..++.++|.+|..+|++++| ...|+++++|-
T Consensus 97 ------~p~~~ka~~~~g~~~~~lg~~~~A------~~~~~~al~l~ 131 (153)
T d2fbna1 97 ------DKNNVKALYKLGVANMYFGFLEEA------KENLYKAASLN 131 (153)
T ss_dssp ------STTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHS
T ss_pred ------cchhhhhhHHhHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 677788999999999999998876 89999999996
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.01 E-value=1.7e-09 Score=94.26 Aligned_cols=109 Identities=18% Similarity=0.245 Sum_probs=85.0
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013867 226 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 305 (435)
Q Consensus 226 la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e 305 (435)
.+..+...|+|++|+..|++||.+.......... ..... .+......++|+|.+|..+|+|++|+..|++||++
T Consensus 33 ~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~--~~~~~--~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-- 106 (169)
T d1ihga1 33 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAED--ADGAK--LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 106 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCH--HHHGG--GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhh--HHHHH--hChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh--
Confidence 4667788999999999999999986543321110 00001 12224457789999999999999999999999976
Q ss_pred HhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 306 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 306 ~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
+|+-+.++.++|.+|..+|++++| ...|++|+++.
T Consensus 107 ------~p~~~~a~~~~g~~~~~l~~~~~A------~~~~~~al~l~ 141 (169)
T d1ihga1 107 ------DPSNTKALYRRAQGWQGLKEYDQA------LADLKKAQEIA 141 (169)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC
T ss_pred ------hhhhhhHHHhHHHHHHHccCHHHH------HHHHHHHHHhC
Confidence 566677899999999999998876 89999999985
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.01 E-value=9.1e-09 Score=88.60 Aligned_cols=135 Identities=13% Similarity=0.190 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchh
Q 013867 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYK 185 (435)
Q Consensus 106 ~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ 185 (435)
..|..+...|..++.+|+|.+|+..|++++.+.... +....
T Consensus 15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~-------------------~~~~~-------------------- 55 (153)
T d2fbna1 15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT-------------------EEWDD-------------------- 55 (153)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC-------------------TTCCC--------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcch-------------------hhhhh--------------------
Confidence 456677888999999999999999999986543211 11000
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 013867 186 TYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC 265 (435)
Q Consensus 186 eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~ 265 (435)
+........+. ..+.+|+|.+|..+|+|++|+..|++||++ .
T Consensus 56 --~~~~~~~~~~~---------------------~~~~~Nla~~~~~l~~~~~Al~~~~~al~~-----------~---- 97 (153)
T d2fbna1 56 --QILLDKKKNIE---------------------ISCNLNLATCYNKNKDYPKAIDHASKVLKI-----------D---- 97 (153)
T ss_dssp --HHHHHHHHHHH---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------S----
T ss_pred --HHHHHhhhhHH---------------------HHHHhhHHHHHHHhcccchhhhhhhccccc-----------c----
Confidence 00111111111 124457888999999999999999999998 1
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh
Q 013867 266 NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA 330 (435)
Q Consensus 266 ~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG 330 (435)
|+ .+.++.++|.+|..+|+|++|...|++++.|. |+|+. +.++++.+.....
T Consensus 98 ---p~--~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-----P~n~~---~~~~l~~~~~kl~ 149 (153)
T d2fbna1 98 ---KN--NVKALYKLGVANMYFGFLEEAKENLYKAASLN-----PNNLD---IRNSYELCVNKLK 149 (153)
T ss_dssp ---TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTCHH---HHHHHHHHHHHHH
T ss_pred ---ch--hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHHH
Confidence 11 13578999999999999999999999999983 55555 4667777766543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=3.3e-10 Score=99.15 Aligned_cols=94 Identities=22% Similarity=0.148 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 274 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 274 l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
+..+.+.|..|..+|+|++|+.+|++||.+ .|+.+..++|+|.+|...|+|++| +..|++||++-
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~A------i~~~~~al~l~- 68 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQA------LADCRRALELD- 68 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHH------HHHHHHHTTSC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhh------hHHHHHHHHhC-
Confidence 457889999999999999999999999998 577789999999999999998876 89999998774
Q ss_pred CCCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 354 APPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 354 ~~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
|+....+.|+|.++..+|+|++|+..+.+
T Consensus 69 ------p~~~~a~~~lg~~~~~l~~~~~A~~~~~~ 97 (201)
T d2c2la1 69 ------GQSVKAHFFLGQCQLEMESYDEAIANLQR 97 (201)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55566788999999999999999887643
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.7e-08 Score=86.65 Aligned_cols=73 Identities=11% Similarity=0.025 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013867 222 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 301 (435)
Q Consensus 222 ~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL 301 (435)
...++|.+|..+|++++|+..|++||++ . |+ ...++.++|.+|..+|+|++|...|++++
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~kal~~---~---------------p~--~~~a~~~~g~~~~~~g~~~eA~~~~~~a~ 105 (159)
T d1a17a_ 46 YYGNRSLAYLRTECYGYALGDATRAIEL---D---------------KK--YIKGYYRRAASNMALGKFRAALRDYETVV 105 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---C---------------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhHHHHHhccccchHHHHHHHHHHH---c---------------cc--chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3345677888999999999999999999 1 11 12468899999999999999999999999
Q ss_pred HHHHHhhCCCChhHHHHH
Q 013867 302 TKTEELFGSHHPKVGVVL 319 (435)
Q Consensus 302 ~I~e~~lG~~HP~va~~L 319 (435)
.+ .|++|.+-..+
T Consensus 106 ~~-----~p~~~~~~~~l 118 (159)
T d1a17a_ 106 KV-----KPHDKDAKMKY 118 (159)
T ss_dssp HH-----STTCHHHHHHH
T ss_pred Hc-----CCCCHHHHHHH
Confidence 86 56666654443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=2.1e-09 Score=90.26 Aligned_cols=96 Identities=13% Similarity=-0.024 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHH
Q 013867 224 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF---GDAEEILTRT 300 (435)
Q Consensus 224 ~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y---~eAe~l~~rA 300 (435)
.+++..+.++++|++|+..|+++|.+ ++ . ...+++|+|.++...++. ++|+.+|+++
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--------~p-~-----------~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~ 62 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--------GS-V-----------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL 62 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------SC-C-----------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--------CC-C-----------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 35566778999999999999999999 11 1 135789999999875555 4455555555
Q ss_pred HHHHHHhhCCCC-hhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 301 LTKTEELFGSHH-PKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 301 L~I~e~~lG~~H-P~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
|. .+. |..+.++.|||.+|..+|+|++| +..|+++|+|-
T Consensus 63 l~-------~~~~~~~~~~~~~Lg~~y~~~g~~~~A------~~~~~~aL~~~ 102 (122)
T d1nzna_ 63 LP-------KGSKEEQRDYVFYLAVGNYRLKEYEKA------LKYVRGLLQTE 102 (122)
T ss_dssp TT-------TSCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC
T ss_pred Hh-------ccCCchHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHhC
Confidence 53 332 55678999999999999998877 89999999986
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=1.7e-09 Score=86.32 Aligned_cols=87 Identities=13% Similarity=0.132 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 302 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~ 302 (435)
...+|.++..+|+|++|+++|++|+++...... . . ++ ...+++|||.+|..+|+|++|...|++||+
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~--~--~-------~~--~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEI--S--T-------ID--KVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--C--S-------SC--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc--c--C-------cc--HHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 356788999999999999999999999542111 0 1 11 235789999999999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHHhh
Q 013867 303 KTEELFGSHHPKVGVVLTCLALMFRNKA 330 (435)
Q Consensus 303 I~e~~lG~~HP~va~~L~nLA~ly~~qG 330 (435)
+ -|+|| .+++||+.+.+..+
T Consensus 75 l-----~P~~~---~a~~Nl~~~~~~l~ 94 (95)
T d1tjca_ 75 L-----DPEHQ---RANGNLKYFEYIMA 94 (95)
T ss_dssp H-----CTTCH---HHHHHHHHHHHHHH
T ss_pred h-----CcCCH---HHHHHHHHHHHHhC
Confidence 8 36665 58888887766543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.95 E-value=1.7e-08 Score=87.64 Aligned_cols=136 Identities=13% Similarity=0.089 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchh
Q 013867 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYK 185 (435)
Q Consensus 106 ~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ 185 (435)
.++..+...|..+..+|+|.+|+..|++++.+.+..... - . ..
T Consensus 25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~---------------~-~---------------------~~ 67 (169)
T d1ihga1 25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAA---------------A-E---------------------DA 67 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH---------------S-C---------------------HH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh---------------h-h---------------------hH
Confidence 355667789999999999999999999986543221100 0 0 00
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 013867 186 TYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC 265 (435)
Q Consensus 186 eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~ 265 (435)
+.. . .+|....+..++|.+|..+|+|++|+..|.+||++ .
T Consensus 68 --~~~-----~------------------~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-----------~---- 107 (169)
T d1ihga1 68 --DGA-----K------------------LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-----------D---- 107 (169)
T ss_dssp --HHG-----G------------------GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----------C----
T ss_pred --HHH-----H------------------hChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-----------h----
Confidence 000 0 00222345677899999999999999999999987 1
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhh
Q 013867 266 NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 331 (435)
Q Consensus 266 ~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~ 331 (435)
|+ ...++.++|.+|..+|+|++|...|++|+++ .|+++.+.. .|+.++....+
T Consensus 108 ---p~--~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l-----~p~n~~~~~---~l~~~~~~l~~ 160 (169)
T d1ihga1 108 ---PS--NTKALYRRAQGWQGLKEYDQALADLKKAQEI-----APEDKAIQA---ELLKVKQKIKA 160 (169)
T ss_dssp ---TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH---HHHHHHHHHHH
T ss_pred ---hh--hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHH---HHHHHHHHHHH
Confidence 11 1246899999999999999999999999996 567777644 45555554443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.8e-09 Score=86.12 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC
Q 013867 276 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 355 (435)
Q Consensus 276 ~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~ 355 (435)
...+||.++..+|+|++|.+.|++|+.+.... ...+++.+.+|+|||.+|..+|++++| ...|++||++-
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~-~~~~~~~~~~l~~Lg~~~~~~g~~~~A------~~~y~~aL~l~--- 76 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEG-EISTIDKVSVLDYLSYAVYQQGDLDKA------LLLTKKLLELD--- 76 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CCCSSCHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh-hccCccHHHHHHHHhhHHHhcCChHHH------HHHHHHHHHhC---
Confidence 45799999999999999999999999998764 455678899999999999999998877 89999999985
Q ss_pred CCCCCchhhhhccHHHHH
Q 013867 356 PLESEGVETKVDRTDIVA 373 (435)
Q Consensus 356 ~~~hp~~a~~l~nla~~~ 373 (435)
|+|+. .++|++.+.
T Consensus 77 -P~~~~---a~~Nl~~~~ 90 (95)
T d1tjca_ 77 -PEHQR---ANGNLKYFE 90 (95)
T ss_dssp -TTCHH---HHHHHHHHH
T ss_pred -cCCHH---HHHHHHHHH
Confidence 55554 566666554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=3.2e-08 Score=93.81 Aligned_cols=233 Identities=9% Similarity=-0.068 Sum_probs=151.2
Q ss_pred ChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 013867 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN--YVEAIEKLQKVENFKNSILGVRVAAMEALAGL 155 (435)
Q Consensus 78 s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGk--y~eA~~l~~ral~i~e~~L~i~vaale~L~g~ 155 (435)
..|.+.+|+.+|++++.+ +|......+++|.++...|+ +++|+..+++++.+..+..... ....+..
T Consensus 85 ~~~~~~~al~~~~~~l~~--------~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~---~~~~~~~ 153 (334)
T d1dcea1 85 SAALVKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCW---DYRRFVA 153 (334)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--------CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhh---hhHHHHH
Confidence 356789999999999964 56777888899998888775 8999999999987755432211 1122334
Q ss_pred HHhcCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchh--HHHHHHHHHHHHh
Q 013867 156 YLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTG--SAALSYGEYLHAT 233 (435)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~--~~a~~la~~~~~~ 233 (435)
+...+.+..|... +......+..+..++..+..... --|++++|...+..... .....+...+...
T Consensus 154 ~~~~~~~~~Al~~-------~~~~i~~~p~~~~a~~~l~~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 221 (334)
T d1dcea1 154 AQAAVAPAEELAF-------TDSLITRNFSNYSSWHYRSCLLP-----QLHPQPDSGPQGRLPENVLLKELELVQNAFFT 221 (334)
T ss_dssp HHTCCCHHHHHHH-------HHTTTTTTCCCHHHHHHHHHHHH-----HHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHhccccHHHHHH-------HHHHHHcCCCCHHHHHHHHHHHH-----HhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHh
Confidence 4445555444322 22222212233455544443332 33566655433311110 1112223344567
Q ss_pred hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCh
Q 013867 234 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP 313 (435)
Q Consensus 234 G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP 313 (435)
+.+++|...|.+++.+ .. .... ...++|..+...|++.+|...|.+++ +.+|
T Consensus 222 ~~~~~a~~~~~~~l~~---~~-----~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~p 273 (334)
T d1dcea1 222 DPNDQSAWFYHRWLLG---RA-----EPLF------------RCELSVEKSTVLQSELESCKELQELE--------PENK 273 (334)
T ss_dssp CSSCSHHHHHHHHHHS---CC-----CCSS------------SCCCCHHHHHHHHHHHHHHHHHHHHC--------TTCH
T ss_pred cchhHHHHHHHHHHHh---Cc-----chhh------------HHHHHHHHHHHHhhHHHHHHHHHHHH--------hhCc
Confidence 8888899999888866 11 1111 13478889999999999999988776 6799
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHH
Q 013867 314 KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVAL 374 (435)
Q Consensus 314 ~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~ 374 (435)
....++.++|.+|..+|++++| ...|++|+++- |+-..-+++++..+.
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~eA------~~~~~~ai~ld-------P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 274 WCLLTIILLMRALDPLLYEKET------LQYFSTLKAVD-------PMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHHHCTGGGHHHH------HHHHHHHHHHC-------GGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHC-------cccHHHHHHHHHHHh
Confidence 9999999999999999998877 89999999984 554545555655554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.90 E-value=1.5e-09 Score=93.33 Aligned_cols=119 Identities=12% Similarity=0.092 Sum_probs=82.5
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHH
Q 013867 230 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM----------GNFGDAEEILTR 299 (435)
Q Consensus 230 ~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~q----------G~y~eAe~l~~r 299 (435)
|..+|+|++|+..|++|+++ . |+ ...+++++|.+|... +++++|+..|++
T Consensus 7 ~~r~~~fe~A~~~~e~al~~-----------~-------P~--~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~k 66 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS-----------N-------PL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEE 66 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------C-------TT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh-----------C-------Cc--chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 56789999999999999999 1 11 124678999998754 455778888888
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhh-----hhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHH
Q 013867 300 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS-----SALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVAL 374 (435)
Q Consensus 300 AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A-----~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~ 374 (435)
|++| .|+-..+++|||.+|..+|++... ..|.+|...|++|+++- |++ .....+++....
T Consensus 67 Al~l--------~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~----P~~---~~~~~~L~~~~k 131 (145)
T d1zu2a1 67 ALLI--------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ----PDN---THYLKSLEMTAK 131 (145)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC----TTC---HHHHHHHHHHHT
T ss_pred HHHh--------cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC----CCH---HHHHHHHHHHHH
Confidence 8776 577777899999999999975322 12444555666666554 333 334555667766
Q ss_pred HhcCHHHHh
Q 013867 375 ARGGYAEAL 383 (435)
Q Consensus 375 a~G~yaeal 383 (435)
+.+.|.|+.
T Consensus 132 a~~~~~e~~ 140 (145)
T d1zu2a1 132 APQLHAEAY 140 (145)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.88 E-value=1.1e-08 Score=97.19 Aligned_cols=211 Identities=9% Similarity=-0.107 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 013867 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (435)
Q Consensus 61 vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~ 140 (435)
......+++..+... .++++++|+..+++++++..+ .+......++.++..+|++++|++.+++++.+..+
T Consensus 106 ~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~al~~~~~-------~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~ 176 (334)
T d1dcea1 106 SYGTWHHRCWLLSRL--PEPNWARELELCARFLEADER-------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 176 (334)
T ss_dssp CHHHHHHHHHHHHTC--SSCCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred cHHHHHHhhHHHHHh--ccccHHHHHHHHHHHHhhCch-------hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC
Confidence 334455666666432 456799999999999987532 34445678899999999999999999999777654
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-------HHh---cCCCchhchhhHHHHHHHHHHHHHHhcCCCcc
Q 013867 141 ILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQL-------CEK---HKPENYKTYGAVNSRANAVKGLVELAHGNLES 210 (435)
Q Consensus 141 ~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l-------~~~---~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~ 210 (435)
. ..++.+++-++..+|+++.|......+..+ +.. .++ +. ++.....+++. ..
T Consensus 177 ~----~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~--~~--~a~~~~~~~l~-----~~----- 238 (334)
T d1dcea1 177 N----YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP--ND--QSAWFYHRWLL-----GR----- 238 (334)
T ss_dssp C----HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS--SC--SHHHHHHHHHH-----SC-----
T ss_pred C----HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcc--hh--HHHHHHHHHHH-----hC-----
Confidence 3 335667777777888776553222111111 110 011 11 11111111111 11
Q ss_pred cccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCH
Q 013867 211 GLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF 290 (435)
Q Consensus 211 a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y 290 (435)
+.......+++..+...|++++|...|.+++.+ . |. ...++.+||.+|..+|+|
T Consensus 239 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~-------p~--~~~~~~~l~~~~~~~~~~ 292 (334)
T d1dcea1 239 ------AEPLFRCELSVEKSTVLQSELESCKELQELEPE-----------N-------KW--CLLTIILLMRALDPLLYE 292 (334)
T ss_dssp ------CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT-----------C-------HH--HHHHHHHHHHHHCTGGGH
T ss_pred ------cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----------C-------ch--HHHHHHHHHHHHHHCCCH
Confidence 111122233466778899999999999988866 1 21 235778999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhh
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 332 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~ 332 (435)
++|..+|++|+++ .|+-+..+++|+..+..+.++
T Consensus 293 ~eA~~~~~~ai~l--------dP~~~~y~~~L~~~~~~e~~~ 326 (334)
T d1dcea1 293 KETLQYFSTLKAV--------DPMRAAYLDDLRSKFLLENSV 326 (334)
T ss_dssp HHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------CcccHHHHHHHHHHHhHhhHH
Confidence 9999999999998 688888999999998865443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=1e-08 Score=84.32 Aligned_cols=93 Identities=12% Similarity=0.094 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
.-|.+-|..+..+|+|++|+.+|+++|.+ .|+-...++++|.+|..+|++++| +..|.+++++.
T Consensus 4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A------~~~~~~al~~~-- 67 (117)
T d1elwa_ 4 NELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKA------YEDGCKTVDLK-- 67 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhccccccccccccccc------chhhhhHHHhc--
Confidence 45778899999999999999999999986 477778999999999999998776 89999999886
Q ss_pred CCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 355 PPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
|+....+.|++.++..+|+|++|+..+.+
T Consensus 68 -----p~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 96 (117)
T d1elwa_ 68 -----PDWGKGYSRKAAALEFLNRFEEAKRTYEE 96 (117)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----cchhhHHHHHHHHHHHccCHHHHHHHHHH
Confidence 34455788999999999999999887643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.82 E-value=8.3e-09 Score=84.36 Aligned_cols=89 Identities=11% Similarity=0.003 Sum_probs=78.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCC
Q 013867 278 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPL 357 (435)
Q Consensus 278 ~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~ 357 (435)
.++|..+..+|+|++|+..|++++.+ +|+-..++.+||.+|..+|++++| +..|++|+++.
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A------~~~~~~al~~~----- 80 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLA------IIALNHARMLD----- 80 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHh------hcccccccccc-----
Confidence 57899999999999999999999987 466679999999999999998776 89999999985
Q ss_pred CCCchhhhhccHHHHHHHhcCHHHHhhHhh
Q 013867 358 ESEGVETKVDRTDIVALARGGYAEALSVQQ 387 (435)
Q Consensus 358 ~hp~~a~~l~nla~~~~a~G~yaeal~~~~ 387 (435)
|+....+.+++.++..+|++.+|+...+
T Consensus 81 --p~~~~a~~~la~~y~~~g~~~~A~~~l~ 108 (112)
T d1hxia_ 81 --PKDIAVHAALAVSHTNEHNANAALASLR 108 (112)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cccccchHHHHHHHHHCCCHHHHHHHHH
Confidence 5556678899999999999999987653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=2.5e-08 Score=83.42 Aligned_cols=83 Identities=10% Similarity=0.040 Sum_probs=59.0
Q ss_pred HHHHHHHHHH---HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013867 222 AALSYGEYLH---ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 298 (435)
Q Consensus 222 ~a~~la~~~~---~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~ 298 (435)
+..+||.++. ..+++++|+.+|++++.+ ... |+ ...++.+||.+|..+|+|++|+.+|+
T Consensus 35 ~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-----------~~~-----~~--~~~~~~~Lg~~y~~~g~~~~A~~~~~ 96 (122)
T d1nzna_ 35 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----------GSK-----EE--QRDYVFYLAVGNYRLKEYEKALKYVR 96 (122)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----------SCH-----HH--HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-----------cCC-----ch--HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444555443 257888999999998876 101 11 33578999999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh
Q 013867 299 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKA 330 (435)
Q Consensus 299 rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG 330 (435)
++|+| -|+|+ .++..+..+.....
T Consensus 97 ~aL~~-----~P~~~---~A~~l~~~I~~~~~ 120 (122)
T d1nzna_ 97 GLLQT-----EPQNN---QAKELERLIDKAMK 120 (122)
T ss_dssp HHHHH-----CTTCH---HHHHHHHHHHHHHH
T ss_pred HHHHh-----CcCCH---HHHHHHHHHHHHHc
Confidence 99997 35555 45566666665543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=1e-08 Score=104.52 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
....++|.++..+|++++|...|++++.+. -..++.|||.+|+.+|+|++| +..|++|+++.
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----------~~~~~~~LG~l~~~~~~~~~A------~~~y~~A~~l~-- 182 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI----------CQHCLVHLGDIARYRNQTSQA------ESYYRHAAQLV-- 182 (497)
T ss_dssp ----------------------CCHHHHHH----------HHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC--
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHcccHHHH------HHHHHHHHHHC--
Confidence 346799999999999999999999999753 346899999999999998776 89999999996
Q ss_pred CCCCCCchhhhhccHHHHHHHhcCHHHHhhHhhh
Q 013867 355 PPLESEGVETKVDRTDIVALARGGYAEALSVQQN 388 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~a~G~yaeal~~~~~ 388 (435)
|+.+...+++|+++..+|++.+|+..+.+
T Consensus 183 -----P~~~~~~~~Lg~~~~~~~~~~~A~~~y~r 211 (497)
T d1ya0a1 183 -----PSNGQPYNQLAILASSKGDHLTTIFYYCR 211 (497)
T ss_dssp -----TTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----CCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77778899999999999999999887744
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.54 E-value=2.6e-05 Score=70.52 Aligned_cols=226 Identities=14% Similarity=0.108 Sum_probs=123.2
Q ss_pred HHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 013867 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE----SGNYVEAIEKLQKVENF 137 (435)
Q Consensus 62 A~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~----qGky~eA~~l~~ral~i 137 (435)
+..++++|..+-+ +++|++|+.+|+++.+. | -+.++.+||.+|.. .-++.+|...++++...
T Consensus 2 p~~~~~lG~~~~~----~~d~~~A~~~~~kAa~~-----g-----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~ 67 (265)
T d1ouva_ 2 PKELVGLGAKSYK----EKDFTQAKKYFEKACDL-----K-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 67 (265)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHC-----C-----CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc
Confidence 3578899887732 57999999999999743 2 23578889999998 66999999999887543
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcc----cc
Q 013867 138 KNSILGVRVAAMEALAGLYLQLGQD-DTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES----GL 212 (435)
Q Consensus 138 ~e~~L~i~vaale~L~g~~~~~g~~-~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~----a~ 212 (435)
... .+..+++..+. .|.. ......+..........+. . .+. ...+.. ...+..... +.
T Consensus 68 ~~~------~a~~~l~~~~~-~~~~~~~~~~~a~~~~~~a~~~g~---~--~a~--~~l~~~---~~~~~~~~~~~~~a~ 130 (265)
T d1ouva_ 68 NYS------NGCHLLGNLYY-SGQGVSQNTNKALQYYSKACDLKY---A--EGC--ASLGGI---YHDGKVVTRDFKKAV 130 (265)
T ss_dssp TCH------HHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTTC---H--HHH--HHHHHH---HHHCSSSCCCHHHHH
T ss_pred ccc------chhhccccccc-cccccchhhHHHHHHHhhhhhhhh---h--hHH--Hhhccc---ccCCCcccchhHHHH
Confidence 211 11222322222 1211 1111111111111111110 0 111 011100 111111000 00
Q ss_pred c----ccccchhHHHHHHHHHHHHhhchH----HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHH
Q 013867 213 Q----EEEGCTGSAALSYGEYLHATRNFL----LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE 284 (435)
Q Consensus 213 ~----~~~~~~~~~a~~la~~~~~~G~y~----eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly 284 (435)
. ...........+++.+|....... .+..+++++.+. + + ..+..+||.+|
T Consensus 131 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~-----g---~--------------~~A~~~lg~~y 188 (265)
T d1ouva_ 131 EYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----K---D--------------SPGCFNAGNMY 188 (265)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T---C--------------HHHHHHHHHHH
T ss_pred HHhhhhhcccccchhhhhhhhhccCCCcccccccchhhhhccccc-----c---c--------------cccccchhhhc
Confidence 0 001223345566777777644344 444444444322 1 0 14678999999
Q ss_pred HH----cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 285 AH----MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 285 ~~----qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
.. ..++++|+.+|++|.+. .|| .++.|||.+|.. |.-.+ .++.+|...|++|.+.-
T Consensus 189 ~~g~~~~~d~~~A~~~~~~aa~~-------g~~---~a~~~LG~~y~~-G~g~~-~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 189 HHGEGATKNFKEALARYSKACEL-------ENG---GGCFNLGAMQYN-GEGVT-RNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHTCSSCCCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHT-TSSSS-CCSTTHHHHHHHHHHHT
T ss_pred ccCcccccchhhhhhhHhhhhcc-------cCH---HHHHHHHHHHHc-CCCCc-cCHHHHHHHHHHHHHCc
Confidence 87 67899999999999764 354 478999999984 32100 01344589999997764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.50 E-value=8.6e-06 Score=76.31 Aligned_cols=98 Identities=11% Similarity=0.040 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 013867 221 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQL-EAHMGNFGDAEEILTR 299 (435)
Q Consensus 221 ~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~l-y~~qG~y~eAe~l~~r 299 (435)
.+-..++.+...+|++++|..+|++++... + .. + ..+.+.|.+ +...|+++.|..+|++
T Consensus 135 ~~w~~~~~~~~~~~~~~~ar~i~~~al~~~--------~-~~------~-----~~~~~~a~~e~~~~~~~~~a~~i~e~ 194 (308)
T d2onda1 135 LVYIQYMKFARRAEGIKSGRMIFKKAREDA--------R-TR------H-----HVYVTAALMEYYCSKDKSVAFKIFEL 194 (308)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHTST--------T-CC------T-----HHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------C-Cc------H-----HHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 345778889999999999999999998651 1 10 1 123456665 4567999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 013867 300 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 352 (435)
Q Consensus 300 AL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~ 352 (435)
++.. +|+........+.+...+|++++| ..+|+||+...
T Consensus 195 ~l~~--------~p~~~~~w~~y~~~~~~~g~~~~a------R~~fe~ai~~~ 233 (308)
T d2onda1 195 GLKK--------YGDIPEYVLAYIDYLSHLNEDNNT------RVLFERVLTSG 233 (308)
T ss_dssp HHHH--------HTTCHHHHHHHHHHHHTTCCHHHH------HHHHHHHHHSS
T ss_pred HHHh--------hhhhHHHHHHHHHHHHHcCChHHH------HHHHHHHHHhC
Confidence 9974 455567778888999999998776 89999998754
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.46 E-value=5.8e-06 Score=77.51 Aligned_cols=194 Identities=11% Similarity=0.084 Sum_probs=128.4
Q ss_pred hhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 013867 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (435)
Q Consensus 79 ~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~ 158 (435)
.+.+++|..+|++|+.+.. +. ........+.++.++|++++|...|++++.+....
T Consensus 77 ~~~~~~a~~i~~ral~~~~----p~---~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~----------------- 132 (308)
T d2onda1 77 KLFSDEAANIYERAISTLL----KK---NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID----------------- 132 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTT----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC-----------------
T ss_pred ccchHHHHHHHHHHHHHcC----CC---CHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCC-----------------
Confidence 4567899999999996542 33 33456778899999999999999999986532211
Q ss_pred cCCCcchHHHHHHHHHHHHhcCCCchhchhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHH-HHHhhchH
Q 013867 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEY-LHATRNFL 237 (435)
Q Consensus 159 ~g~~~~A~~~~~~~~~l~~~~~~~~~~eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~-~~~~G~y~ 237 (435)
...+....+.+....+. ++.+..++.+ ++. .. |........++.+ ++..|+++
T Consensus 133 ------~~~~w~~~~~~~~~~~~--~~~ar~i~~~--al~--------~~--------~~~~~~~~~~a~~e~~~~~~~~ 186 (308)
T d2onda1 133 ------PTLVYIQYMKFARRAEG--IKSGRMIFKK--ARE--------DA--------RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp ------THHHHHHHHHHHHHHHC--HHHHHHHHHH--HHT--------ST--------TCCTHHHHHHHHHHHHTSCCHH
T ss_pred ------hHHHHHHHHHHHHHcCC--hHHHHHHHHH--HHH--------hC--------CCcHHHHHHHHHHHHHhccCHH
Confidence 11122233333333221 3333333222 221 11 2233455556655 45679999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh-HH
Q 013867 238 LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK-VG 316 (435)
Q Consensus 238 eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~-va 316 (435)
.|..+|++++... |+. ......++.++..+|++++|..+|+||+.. .+.+|+ ..
T Consensus 187 ~a~~i~e~~l~~~------------------p~~--~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~-----~~~~~~~~~ 241 (308)
T d2onda1 187 VAFKIFELGLKKY------------------GDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTS-----GSLPPEKSG 241 (308)
T ss_dssp HHHHHHHHHHHHH------------------TTC--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHS-----SSSCGGGCH
T ss_pred HHHHHHHHHHHhh------------------hhh--HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCChHHHH
Confidence 9999999999872 110 124567889999999999999999999863 345554 45
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhc
Q 013867 317 VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 353 (435)
Q Consensus 317 ~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k 353 (435)
.........-...|+.+.+ ..+++|+.+++.
T Consensus 242 ~iw~~~~~fE~~~G~~~~~------~~~~~r~~~~~~ 272 (308)
T d2onda1 242 EIWARFLAFESNIGDLASI------LKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHH------HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHH------HHHHHHHHHHCc
Confidence 5666777777888987665 889999999984
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.39 E-value=8.6e-07 Score=75.51 Aligned_cols=90 Identities=12% Similarity=0.181 Sum_probs=62.7
Q ss_pred cchhHHHHHHHHHHH----------HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH
Q 013867 217 GCTGSAALSYGEYLH----------ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH 286 (435)
Q Consensus 217 ~~~~~~a~~la~~~~----------~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~ 286 (435)
|+...+..++|.+|. .++++++|+..|++||+| . |+ ...+++|||.+|..
T Consensus 28 P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l---------~---------P~--~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 28 PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---------D---------PK--KDEAVWCIGNAYTS 87 (145)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------C---------TT--CHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh---------c---------ch--hhHHHhhHHHHHHH
Confidence 556677788887776 456678999999999988 1 11 12478999999999
Q ss_pred cCC-----------HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhh
Q 013867 287 MGN-----------FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH 334 (435)
Q Consensus 287 qG~-----------y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~ 334 (435)
+|+ |++|.+.|++|+++ +|+-...+.+|+......+.|.+
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l--------~P~~~~~~~~L~~~~ka~~~~~e 138 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSLEMTAKAPQLHAE 138 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHTHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhccccc--------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 875 45555555555554 35566777888877766655443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.37 E-value=1.5e-06 Score=76.99 Aligned_cols=115 Identities=20% Similarity=0.141 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccc---------cchHHHHHHHHHHHHHHHHcCCHHHH
Q 013867 223 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM---------ALEEVALAATFALGQLEAHMGNFGDA 293 (435)
Q Consensus 223 a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~---------~~~~~~l~~l~nLa~ly~~qG~y~eA 293 (435)
..+.|..+..+|++++|...|.+||+++ .|. .+...+. ..+...+.++.+++.++..+|+|++|
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~---rG~----~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A 86 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREW---RGP----VLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 86 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC---CSS----TTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC---ccc----ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence 3445667788999999999999999993 431 1111000 01123456778999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh-cCCCCC
Q 013867 294 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL-KAPPLE 358 (435)
Q Consensus 294 e~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~-k~~~~~ 358 (435)
..++++++.+ ||.--..+.+|+.+|..+|++++| ...|+++...+ +.+|.+
T Consensus 87 l~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eA------l~~y~~~~~~L~~eLG~~ 138 (179)
T d2ff4a2 87 IAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDA------LGAYRRVKTTLADDLGID 138 (179)
T ss_dssp HHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHH------HHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHHHHHHhCCC
Confidence 9999999996 788889999999999999998776 89999999998 456776
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.32 E-value=1.2e-05 Score=70.93 Aligned_cols=130 Identities=14% Similarity=-0.065 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCchh
Q 013867 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYK 185 (435)
Q Consensus 106 ~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e~~L~i~vaale~L~g~~~~~g~~~~A~~~~~~~~~l~~~~~~~~~~ 185 (435)
+.-..+.+.|.....+|++++|++.|.+|+++.. |+.-. + +.
T Consensus 9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~r--------------------G~~l~-----~-------------~~ 50 (179)
T d2ff4a2 9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWR--------------------GPVLD-----D-------------LR 50 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--------------------SSTTG-----G-------------GT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--------------------ccccc-----c-------------Cc
Confidence 3455688999999999999999999999976532 22100 0 00
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCcccccccccchhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 013867 186 TYGAVNSRANAVKGLVELAHGNLESGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC 265 (435)
Q Consensus 186 eaeal~~~a~Ai~~~~~~lgg~h~~a~~~~~~~~~~~a~~la~~~~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~ 265 (435)
...-+......+. +....+..+++.++..+|+|++|+.++++++++ +|.
T Consensus 51 ~~~w~~~~r~~l~------------------~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~---------~P~---- 99 (179)
T d2ff4a2 51 DFQFVEPFATALV------------------EDKVLAHTAKAEAEIACGRASAVIAELEALTFE---------HPY---- 99 (179)
T ss_dssp TSTTHHHHHHHHH------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------STT----
T ss_pred chHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh---------CCc----
Confidence 0000111111111 112346667888999999999999999999999 111
Q ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013867 266 NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 311 (435)
Q Consensus 266 ~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~ 311 (435)
.-....+|+.+|..+|++++|...|+++.....+-||-+
T Consensus 100 -------~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~ 138 (179)
T d2ff4a2 100 -------REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 138 (179)
T ss_dssp -------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred -------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Confidence 113567999999999999999999999999999999986
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.19 E-value=3.8e-06 Score=78.94 Aligned_cols=115 Identities=12% Similarity=0.081 Sum_probs=85.5
Q ss_pred HHhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013867 231 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 310 (435)
Q Consensus 231 ~~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~ 310 (435)
..+|++++|+..|+++++. . |+ ......+||++|..+|+|++|...|++++++
T Consensus 7 L~~G~l~eAl~~l~~al~~-----------~-------P~--d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l------- 59 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA-----------S-------PK--DASLRSSFIELLCIDGDFERADEQLMQSIKL------- 59 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT-----------C-------TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred HHCCCHHHHHHHHHHHHHH-----------C-------CC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence 3689999999999999977 1 11 1245789999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCC-CCCCCchhhhhccHHHHHHHhcCHHHHhhHh
Q 013867 311 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP-PLESEGVETKVDRTDIVALARGGYAEALSVQ 386 (435)
Q Consensus 311 ~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~-~~~hp~~a~~l~nla~~~~a~G~yaeal~~~ 386 (435)
+|+......+++.++..++..+ .++.-...+ -+.+|+-...+...+.++..+|++++|....
T Consensus 60 -~P~~~~~~~~l~~ll~a~~~~~-------------~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~ 122 (264)
T d1zbpa1 60 -FPEYLPGASQLRHLVKAAQARK-------------DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122 (264)
T ss_dssp -CGGGHHHHHHHHHHHHHHHHHH-------------HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHhccccH-------------HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6788888888888888766543 333333322 3445654445556778888888888777655
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.77 E-value=0.0035 Score=55.87 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcC
Q 013867 275 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 354 (435)
Q Consensus 275 ~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~ 354 (435)
.+..+||..|..........+...+-+.+.- ...| ..++.+||.+|....-.++ .+.+|+.+|++|.+.
T Consensus 143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~---~~g~---~~A~~~lg~~y~~g~~~~~--d~~~A~~~~~~aa~~--- 211 (265)
T d1ouva_ 143 DGCTILGSLYDAGRGTPKDLKKALASYDKAC---DLKD---SPGCFNAGNMYHHGEGATK--NFKEALARYSKACEL--- 211 (265)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH---HTTC---HHHHHHHHHHHHHTCSSCC--CHHHHHHHHHHHHHT---
T ss_pred chhhhhhhhhccCCCcccccccchhhhhccc---cccc---cccccchhhhcccCccccc--chhhhhhhHhhhhcc---
Confidence 3567899999874444433333333333222 2234 4688999999987211111 144558999998774
Q ss_pred CCCCCCchhhhhccHHHHHHH----hcCHHHHhhHhhh
Q 013867 355 PPLESEGVETKVDRTDIVALA----RGGYAEALSVQQN 388 (435)
Q Consensus 355 ~~~~hp~~a~~l~nla~~~~a----~G~yaeal~~~~~ 388 (435)
++| ....|++.+|.. ..++.+|+..+.+
T Consensus 212 ---g~~---~a~~~LG~~y~~G~g~~~n~~~A~~~~~k 243 (265)
T d1ouva_ 212 ---ENG---GGCFNLGAMQYNGEGVTRNEKQAIENFKK 243 (265)
T ss_dssp ---TCH---HHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred ---cCH---HHHHHHHHHHHcCCCCccCHHHHHHHHHH
Confidence 233 355689999863 2256666665533
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.72 E-value=0.00021 Score=66.58 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=48.4
Q ss_pred CChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 013867 77 KSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (435)
Q Consensus 77 ~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i~e 139 (435)
..+|++++|+..|+++++. +|.-+....+|+.+|+.+|+|++|+..|++++++..
T Consensus 7 L~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P 61 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3679999999999999954 477888999999999999999999999999866543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.94 E-value=0.00087 Score=55.82 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHHHhhhccCChhcHHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013867 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (435)
Q Consensus 58 ~~~vA~~m~~~a~~~~r~~~s~G~Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~qGky~eA~~l~~ral~i 137 (435)
++. ....-+||+++.++. .....++|+.+++.++... +. .-...+++||..|++.|+|++|..++++++++
T Consensus 32 ~~s-~qt~F~YAw~Lv~S~-~~~d~~~gI~lLe~~~~~~-----p~--~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 32 TAT-IQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEA-----ES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp GSC-HHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHC-----GG--GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCC-cchHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcC-----ch--hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 344 478899999998775 6788999999999998532 22 24578999999999999999999999999776
Q ss_pred hhhh
Q 013867 138 KNSI 141 (435)
Q Consensus 138 ~e~~ 141 (435)
.+..
T Consensus 103 eP~n 106 (124)
T d2pqrb1 103 ERNN 106 (124)
T ss_dssp CTTC
T ss_pred CCCc
Confidence 6544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.65 E-value=0.03 Score=45.26 Aligned_cols=108 Identities=13% Similarity=0.056 Sum_probs=70.5
Q ss_pred hchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCh
Q 013867 234 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP 313 (435)
Q Consensus 234 G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~qG~y~eAe~l~~rAL~I~e~~lG~~HP 313 (435)
-++++|..+|++|.+. + + . .+..+||. ..+.++++|.++|++|-+. .||
T Consensus 7 kd~~~A~~~~~kaa~~-----g---~-~-------------~a~~~l~~--~~~~~~~~a~~~~~~aa~~-------g~~ 55 (133)
T d1klxa_ 7 KDLKKAIQYYVKACEL-----N---E-M-------------FGCLSLVS--NSQINKQKLFQYLSKACEL-------NSG 55 (133)
T ss_dssp HHHHHHHHHHHHHHHT-----T---C-T-------------THHHHHHT--CTTSCHHHHHHHHHHHHHT-------TCH
T ss_pred cCHHHHHHHHHHHHHC-----C---C-h-------------hhhhhhcc--ccccCHHHHHHHHhhhhcc-------cch
Confidence 4899999999999754 2 1 1 13456664 4567899999999998653 454
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCchhhhhccHHHHHHH----hcCHHHHhhHh
Q 013867 314 KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA----RGGYAEALSVQ 386 (435)
Q Consensus 314 ~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~hp~~a~~l~nla~~~~a----~G~yaeal~~~ 386 (435)
.++.+||.+|.. |...+ ..+.+|..+|++|.+.- +|+ ...+++.+|.. ..++.+|+.++
T Consensus 56 ---~a~~~Lg~~y~~-g~~~~-~d~~~A~~~~~~aa~~g------~~~---a~~~Lg~~y~~G~gv~~d~~~A~~~~ 118 (133)
T d1klxa_ 56 ---NGCRFLGDFYEN-GKYVK-KDLRKAAQYYSKACGLN------DQD---GCLILGYKQYAGKGVVKNEKQAVKTF 118 (133)
T ss_dssp ---HHHHHHHHHHHH-CSSSC-CCHHHHHHHHHHHHHTT------CHH---HHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred ---hhhhhHHHhhhh-ccccc-hhhHHHHHHHhhhhccC------cch---HHHHHHHHHHcCCccCCCHHHHHHHH
Confidence 578999999975 22211 12445688888887642 333 45678888764 22566555554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.51 E-value=0.034 Score=44.86 Aligned_cols=86 Identities=9% Similarity=-0.019 Sum_probs=60.5
Q ss_pred HhhchHHHHHHHHHHHHHHHHhcccCCCCCcccccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHh
Q 013867 232 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH----MGNFGDAEEILTRTLTKTEEL 307 (435)
Q Consensus 232 ~~G~y~eAe~ly~rAL~I~~~~~~~~~~~~l~~~~~~~~~~~l~~l~nLa~ly~~----qG~y~eAe~l~~rAL~I~e~~ 307 (435)
.+.++++|..+|++|.+. + + ..+..+||.+|.. .-++.+|..+|++|.+.
T Consensus 35 ~~~~~~~a~~~~~~aa~~-----g---~--------------~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~---- 88 (133)
T d1klxa_ 35 SQINKQKLFQYLSKACEL-----N---S--------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL---- 88 (133)
T ss_dssp TTSCHHHHHHHHHHHHHT-----T---C--------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----
T ss_pred cccCHHHHHHHHhhhhcc-----c---c--------------hhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc----
Confidence 356889999999998754 2 1 1357889999876 55789999999998654
Q ss_pred hCCCChhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 013867 308 FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 351 (435)
Q Consensus 308 lG~~HP~va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rAL~I 351 (435)
.|| .+..+||.+|..---.++ .+.+|..+|++|.+.
T Consensus 89 ---g~~---~a~~~Lg~~y~~G~gv~~--d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 89 ---NDQ---DGCLILGYKQYAGKGVVK--NEKQAVKTFEKACRL 124 (133)
T ss_dssp ---TCH---HHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHT
T ss_pred ---Ccc---hHHHHHHHHHHcCCccCC--CHHHHHHHHHHHHHC
Confidence 344 468899999976110111 144568889988764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.39 E-value=0.021 Score=47.15 Aligned_cols=66 Identities=11% Similarity=-0.006 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 013867 273 ALAATFALGQLEAHMGNF---GDAEEILTRTLTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRA 348 (435)
Q Consensus 273 ~l~~l~nLa~ly~~qG~y---~eAe~l~~rAL~I~e~~lG~~HP~-va~~L~nLA~ly~~qG~~e~A~~~~~Ae~Ly~rA 348 (435)
++.+-+++|-.+.+..+. ++|..++++++. .+|. -...+.+||..|...|+|++| ...++++
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~--------~~p~~~rd~lY~Lav~yyklgdy~~A------~~~~~~~ 99 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--------EAESRRRECLYYLTIGCYKLGEYSMA------KRYVDTL 99 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--------HCGGGHHHHHHHHHHHHHHHTCHHHH------HHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh--------cCchhHHHHHHHHHHHHHHHhhHHHH------HHHHHHH
Confidence 346778888888766444 455566555543 2443 468999999999999998877 8899999
Q ss_pred HHHh
Q 013867 349 LEFL 352 (435)
Q Consensus 349 L~I~ 352 (435)
|+|-
T Consensus 100 L~ie 103 (124)
T d2pqrb1 100 FEHE 103 (124)
T ss_dssp HHHC
T ss_pred HccC
Confidence 9997
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.78 E-value=1.4 Score=39.27 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH-HHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCC
Q 013867 291 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLAL-MFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLES 359 (435)
Q Consensus 291 ~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~-ly~~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~h 359 (435)
++|...|++|+++.++-+.|-||--....-|.+. .|.-.++.++| ...|..-|..|++....+..++
T Consensus 143 ~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A--~~lak~afd~ai~~l~~l~ee~ 210 (230)
T d2o02a1 143 DQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKA--CSLAKTAFDEAIAELDTLSEES 210 (230)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH--HHHHHHHHHHHHTTGGGCCTTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHH--HHHHHHHHHHHHHHhhcCChhh
Confidence 4799999999999999999999986555555555 55667887877 5556666776766665544433
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=83.71 E-value=0.87 Score=40.85 Aligned_cols=56 Identities=11% Similarity=-0.003 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 013867 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYES-GNYVEAIEKLQKVENF 137 (435)
Q Consensus 82 Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~q-Gky~eA~~l~~ral~i 137 (435)
-++|...|++|+.+....+.+.||-......|.+..|++. |+-++|+++.+++.+-
T Consensus 147 ~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~ 203 (236)
T d1o9da_ 147 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4578999999999988889999999999999999998875 9999999999998543
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=83.29 E-value=1.7 Score=38.75 Aligned_cols=67 Identities=7% Similarity=0.018 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH-HhhhhhhhhhhHHHHHHHHHHHHHhcCCCCC
Q 013867 290 FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFR-NKAMQEHSSALLIQEGLYRRALEFLKAPPLE 358 (435)
Q Consensus 290 y~eAe~l~~rAL~I~e~~lG~~HP~va~~L~nLA~ly~-~qG~~e~A~~~~~Ae~Ly~rAL~I~k~~~~~ 358 (435)
-++|...|++|+.+...-+.|-||-.....-|.+..|. -.++.++| ...|..-|..|+..+..+..+
T Consensus 147 ~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A--~~lak~afd~ai~~~d~l~ee 214 (236)
T d1o9da_ 147 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRA--CNLAKQAFDEAIAELDTLGEE 214 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH--HHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHH--HHHHHHHHHHHHHHhhcCChh
Confidence 35789999999999999999999997777777776665 45787888 667778888888888655433
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.04 E-value=1.1 Score=40.01 Aligned_cols=56 Identities=14% Similarity=0.047 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhccCcCCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 013867 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENF 137 (435)
Q Consensus 82 Y~eA~~~~eqaL~i~~~~lG~~Hp~~A~~l~nLa~ly~~-qGky~eA~~l~~ral~i 137 (435)
-++|...|++|+.+..+.+.+.||-......|.+..|++ .|+-++|+++.++|.+-
T Consensus 142 ~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ 198 (230)
T d2o02a1 142 VDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDE 198 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 348999999999998888999999999999999998655 89999999999998553
|