Citrus Sinensis ID: 013869

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-----
Protein Sequence
MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccEEEEEccEEEEHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHcccEEcccccccHHHHHHHHccccEEEEEEccccHHHHHHHHHHHcccEEEccccccccccccccccccccccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHcccccccccccccEEEccHHHHHHHHHccccccHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHccccEEcccHHHHHHHcccccccccccccccccccccEEEEEEcccccccccccEEEEEcccccHHHHcccHHHHHHcccccccccccEEEEcccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccccEEEEEcccEEcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHccccEEcccccccHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHccccEEEEcccccccHHHHHcccccccccccccccccEEEEEEcccccccccEEccHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHcccEEEEcccccHHHHHHHHccHHHHHHHHHHcccEEEcccHHHHHHHHHcccccHHcHHHccHHHccccEEEEEccccccHHHHHHHHHHcccEEEEcccccccEEEEEccccccccccccccccccEEEEEEcccccccccccEEEEEccccccccccccHHHHHHHHcccccccccccHEEcccccEEEEccccccc
Coil and Loop (DISEMBL)
MEVFKAAYKkgsmardsvairadqksysydqLASSALRISSLLcsndlkttsektknensavlaggcgarigivakpsFEFVAGVLGTWFSGciavplalsypesellhvmhdsdismvLSTEDYREVLQNVasksgakfslippvpnvssettvfdqsqaekmdgqrgedpalivytsgttgkpkgvvhTHKSIDAQVQMLTEAWeytsadqflhclplhhvHGLFNAllaplyagatvefmpkfsvRGIWQRWResypvngnrageaitaftgvPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMcgssalplpvmqqWETItghrllerygmTEFVMAISNplrgarkagtvgnplpgvqvkiaedesgsdaagvgeicvkspslfkeywklpkvtkdsftadgffktgdtgkqdedgyYIILGRKGIYF
Flexible Loop (DISEMBL)
MEVFKAAykkgsmardsvairadqksysYDQLASSALRISSLLCSNDLKttsektknensavlAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVasksgakfslippvpnvssETTVFDQSqaekmdgqrgedPALIVYTsgttgkpkgvvHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKvtkdsftadgffktgdtgkqdedgyyiilgrkgiyf
Low Complexity Region (SEG)
MEVFKAAYKKGSMARDSVAIRADQKSYSYDQlassalrissllcsNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQaasasaaKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF
Disordered region (IsUnstruct)
************************************LRISSLLC****************AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV*****************************************LIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGN*L*GVQV***********AGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIY*
Disordered Region (DISOPRED)
MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETT************QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF
Disordered Region (DISEMBL)
MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQ**********GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF
Disordered Region (DISPRO)
MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	435	2.2.26 [Sep-21-2011]
Q8H151	544	Malonate--CoA ligase OS=A	yes	no	0.979	0.783	0.718	0.0
Q4G176	576	Acyl-CoA synthetase famil	yes	no	0.896	0.677	0.381	3e-77
Q58DN7	586	Acyl-CoA synthetase famil	yes	no	0.896	0.665	0.369	5e-75
Q6GLK6	578	Acyl-CoA synthetase famil	N/A	no	0.816	0.614	0.389	7e-74
Q3URE1	583	Acyl-CoA synthetase famil	yes	no	0.811	0.605	0.385	1e-72
O07610	513	Long-chain-fatty-acid--Co	yes	no	0.868	0.736	0.273	1e-35
P94547	560	Long-chain-fatty-acid--Co	no	no	0.864	0.671	0.283	1e-34
Q0K844	509	Probable sulfoacetate--Co	no	no	0.885	0.756	0.285	3e-33
O74976	512	Putative peroxisomal-coen	yes	no	0.795	0.675	0.300	7e-32
O53306	503	Long-chain-fatty-acid--Co	no	no	0.744	0.644	0.266	1e-27

>sp|Q8H151|AAE13_ARATH Malonate--CoA ligase OS=Arabidopsis thaliana GN=AAE13 PE=1 SV=1

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/434 (71%), Positives = 359/434 (82%), Gaps = 8/434 (1%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKN-EN 59
           MEVFKAA+ + S + D +AI+AD KSYSY QL SSALRIS L   +D     ++TK  E 
Sbjct: 1   MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 60

Query: 60  SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
              L G   ARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++
Sbjct: 61  FGSLKG---ARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLL 117

Query: 120 LSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVY 177
           LSTED+ E ++ +A+KSGA+F LIPPV N +SET   +Q Q +  +  G+  +DPALIVY
Sbjct: 118 LSTEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVY 177

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
           TSGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA 
Sbjct: 178 TSGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYAR 237

Query: 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
           + VEF+PKFSV GIW+RWRESYPVN  +  ++IT FTGVPTMYTRLIQGYEAMD E+Q +
Sbjct: 238 SLVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDS 297

Query: 298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTV 357
           SA AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTEFVMA+SNPLRGAR AGTV
Sbjct: 298 SAFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGARNAGTV 357

Query: 358 GNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTG 417
           G PLPGV+ KI EDE  +DA GVGEICVKSPSLFKEYW LP+VTK+SFT DG+FKTGD G
Sbjct: 358 GKPLPGVEAKIKEDE--NDANGVGEICVKSPSLFKEYWNLPEVTKESFTEDGYFKTGDAG 415

Query: 418 KQDEDGYYIILGRK 431
           + DEDGYY+ILGR 
Sbjct: 416 RVDEDGYYVILGRN 429

Malonate--CoA ligase that catalyzes the formation of malonyl-CoA directly from malonate and CoA. May be required for the detoxification of malonate.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: nEC: 3

>sp|Q4G176|ACSF3_HUMAN Acyl-CoA synthetase family member 3, mitochondrial OS=Homo sapiens GN=ACSF3 PE=1 SV=3

 Score =  289 bits (739), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 171/448 (38%), Positives = 243/448 (54%), Gaps = 58/448 (12%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA-----R 70
           D +A+      ++Y +L S +LR+S  +C                  L G  G      R
Sbjct: 55  DRIALVDQHGRHTYRELYSRSLRLSQEICR-----------------LCGCVGGDLREER 97

Query: 71  IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ 130
           +  +      +V     +W SG +AVPL   +P ++L +V+ DS  S+VL++++Y E+L 
Sbjct: 98  VSFLCANDASYVVAQWASWMSGGVAVPLYRKHPAAQLEYVICDSQSSVVLASQEYLELLS 157

Query: 131 NVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH 190
            V  K G    L+P  P + +              G R +  A+I+YTSGTTG+PKGV+ 
Sbjct: 158 PVVRKLGV--PLLPLTPAIYTGAVEEPAEVPVPEQGWRNKG-AMIIYTSGTTGRPKGVLS 214

Query: 191 THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG 250
           TH++I A V  L   W +T  D  LH LPLHHVHG+ NALL PL+ GAT   MP+FS + 
Sbjct: 215 THQNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNALLCPLWVGATCVMMPEFSPQQ 274

Query: 251 IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS---ASAAKQLRL 307
           +W+++  S           I  F  VPT+YT+L++ Y+   T+  A     A   +++RL
Sbjct: 275 VWEKFLSS-------ETPRINVFMAVPTIYTKLMEYYDRHFTQPHAQDFLRAVCEEKIRL 327

Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGA-RKAGTVGNPLPGVQV 366
           M+ GS+ALPLPV+++W+ ITGH LLERYGMTE  MA+S PL  A R  G+VG PLPGVQV
Sbjct: 328 MVSGSAALPLPVLEKWKNITGHTLLERYGMTEIGMALSGPLTTAVRLPGSVGTPLPGVQV 387

Query: 367 KIAEDESGSDAAGV---------------------GEICVKSPSLFKEYWKLPKVTKDSF 405
           +I  +    +A                        GE+ V+ PS+F+EYW  P+ TK +F
Sbjct: 388 RIVSENPQREACSYTIHAEGDERGTKVTPGFEEKEGELLVRGPSVFREYWNKPEETKSAF 447

Query: 406 TADGFFKTGDTGKQDEDGYYIILGRKGI 433
           T DG+FKTGDT    +DG Y I GR  +
Sbjct: 448 TLDGWFKTGDT-VVFKDGQYWIRGRTSV 474

Catalyzes the initial reaction in intramitochondrial fatty acid synthesis, by activating malonate and methylmalonate, but not acetate, into their respective CoA thioester. May have some preference toward very-long-chain substrates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q58DN7|ACSF3_BOVIN Acyl-CoA synthetase family member 3, mitochondrial OS=Bos taurus GN=ACSF3 PE=2 SV=1

 Score =  281 bits (720), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 165/447 (36%), Positives = 242/447 (54%), Gaps = 57/447 (12%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D +A+      ++Y  L   +LR+S  +C   L+  ++    E           R+ ++ 
Sbjct: 56  DRLALIDQHGRHTYKDLYLRSLRLSREIC--QLRACADGDLREE----------RVSLLC 103

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
                FV      W SG +AVPL   +P ++L + + DS  S+VL+  ++ E+L  VA K
Sbjct: 104 SNDVSFVVAQWAAWMSGGVAVPLYRKHPRAQLEYFIQDSRSSVVLAGPEHVELLSPVAQK 163

Query: 136 SGAKFSLIPPVPNVSSETTVF-----DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH 190
            G        VP +    TV+     D  +   ++    +  A+I+YTSGTTG+PKGV+ 
Sbjct: 164 LG--------VPLLPLPPTVYHGVAEDPEEGLVLERNWRDRGAMIIYTSGTTGRPKGVLS 215

Query: 191 THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG 250
           TH +I A V  L   W +T  D  LH LPLHHVHG+ N LL PL+ GAT   +P+FS + 
Sbjct: 216 THDNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSAQL 275

Query: 251 IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA---ASASAAKQLRL 307
           +W+++  S           I  F  VPT+Y++L+  Y+   T+        A   +++RL
Sbjct: 276 VWEKFLSS-------EAPQINVFMAVPTIYSKLMDYYDKHFTQPHVQDFVRAVCEEKIRL 328

Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVK 367
           M+ GS+ALPLPV+++W+ ITGH LLERYGMTE  MA+SNPL  AR  G+VG PLPGV+V+
Sbjct: 329 MVSGSAALPLPVLEKWKGITGHTLLERYGMTEIGMALSNPLTAARLPGSVGTPLPGVEVR 388

Query: 368 IAEDESGSDAAGV---------------------GEICVKSPSLFKEYWKLPKVTKDSFT 406
           I  +    D++                       GE+ V+ PS+F+EYW  P+ TK +FT
Sbjct: 389 IVSENPQKDSSPYLIHAEGSEENTKVTPGFEEKEGELLVRGPSVFREYWDKPEETKAAFT 448

Query: 407 ADGFFKTGDTGKQDEDGYYIILGRKGI 433
           +DG+FKTGDT    +DG Y I GR  +
Sbjct: 449 SDGWFKTGDT-VVFKDGCYWIRGRTSV 474

Catalyzes the initial reaction in intramitochondrial fatty acid synthesis, by activating malonate and methylmalonate, but not acetate, into their respective CoA thioester. May have some preference toward very-long-chain substrates.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q6GLK6|ACSF3_XENLA Acyl-CoA synthetase family member 3, mitochondrial OS=Xenopus laevis GN=acsf3 PE=2 SV=1

 Score =  278 bits (710), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 151/388 (38%), Positives = 221/388 (56%), Gaps = 33/388 (8%)

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           R+  +   +  +V      W SG IAVPL  S+P SEL +V+ DS  ++V++ E Y  VL
Sbjct: 98  RVSFLCPNNSSYVVCQWAVWMSGAIAVPLCKSHPPSELKYVLQDSQSALVVAEESYTNVL 157

Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
             +A + G     +    N+   + +  + +  ++D    +  A+I+YTSGTTG+PKGV+
Sbjct: 158 SPLAEQLGIPVLTMSGSQNLHP-SELLQEIKISQLDLDWKDRGAMIIYTSGTTGRPKGVL 216

Query: 190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
            TH ++ + V  L   W +T  D  LH LPLHHVHG+ N L+ PL+ GAT   +P+F  +
Sbjct: 217 STHYNLYSMVTALVNEWGWTKEDSILHVLPLHHVHGVVNKLMCPLWVGATCVILPEFCPK 276

Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE---LQAASASAAKQLR 306
            +WQ +         R   +I  F  VPT+Y++LI  YE   T     +   A+  +++R
Sbjct: 277 TVWQHFL-------GRDVPSINIFMAVPTIYSKLIAYYEQHFTHSNVREFVRAACQERIR 329

Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
           LM+ GSSALP+PV+++W+ ITGH LLERYGMTE  MA++NPL G R  G VG PLPGV+V
Sbjct: 330 LMVSGSSALPVPVLERWQEITGHTLLERYGMTEIGMALTNPLHGPRVPGAVGAPLPGVEV 389

Query: 367 KIAED-----------ESGSDAAGV----------GEICVKSPSLFKEYWKLPKVTKDSF 405
           +                +  D+ G           GE+ V+ P++FKEYW     T+++F
Sbjct: 390 RTVTQNPRKEGTSYTTHAQGDSTGTMVSVGLENREGELQVRGPAVFKEYWNKRLDTQEAF 449

Query: 406 TADGFFKTGDTGKQDEDGYYIILGRKGI 433
           T+DG+FKTGDT    +DG Y ILGR  +
Sbjct: 450 TSDGWFKTGDTAMY-KDGTYWILGRTSV 476

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. May have some preference toward very-long-chain substrates.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q3URE1|ACSF3_MOUSE Acyl-CoA synthetase family member 3, mitochondrial OS=Mus musculus GN=Acsf3 PE=2 SV=2

 Score =  274 bits (700), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 149/387 (38%), Positives = 219/387 (56%), Gaps = 34/387 (8%)

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           R+  +      +V     +W SG +AVPL   +PE++L + + DS  S+V+  ++Y E L
Sbjct: 97  RVSFLCSNDVSYVVAQWASWMSGGVAVPLYWKHPEAQLEYFIQDSRSSLVVVGQEYLERL 156

Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
             +A + G    L+P  P V    T     Q  +  G R    A+I YTSGTTG+PKG +
Sbjct: 157 SPLAQRLGV--PLLPLTPAVYHGATEKPTEQPVEESGWRDRG-AMIFYTSGTTGRPKGAL 213

Query: 190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
            TH+++ A V  L  +W +T  D  LH LPLHHVHG+ N LL PL+ GAT   +P+FS +
Sbjct: 214 STHRNLAAVVTGLVHSWAWTKNDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSAQ 273

Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA---ASASAAKQLR 306
            +W+++  S           IT F  VPT+Y++L+  Y+   T+        A   +++R
Sbjct: 274 QVWEKFLSS-------EAPQITVFMAVPTVYSKLLDYYDKHFTQPHVQDFVRAVCKERIR 326

Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
           LM+ GS+ALP+P++++W + TGH LLERYGMTE  MA+SNPL  AR  G+VG PLPGV+V
Sbjct: 327 LMVSGSAALPVPLLEKWRSATGHTLLERYGMTEIGMALSNPLTEARVPGSVGTPLPGVEV 386

Query: 367 KIAEDESGSDAAGV--------------------GEICVKSPSLFKEYWKLPKVTKDSFT 406
           +I  +     +  +                    GE+ V+ PS+F+EYW  P+ TK +FT
Sbjct: 387 RIISENPQKGSPYIIHAEGNERGTKVTPGFEEKEGELLVRGPSVFREYWDKPEETKSAFT 446

Query: 407 ADGFFKTGDTGKQDEDGYYIILGRKGI 433
           +DG+F+TGDT    +D  Y I GR  +
Sbjct: 447 SDGWFRTGDTAV-FKDARYWIRGRTSV 472

Catalyzes the initial reaction in intramitochondrial fatty acid synthesis, by activating malonate and methylmalonate, but not acetate, into their respective CoA thioester. May have some preference toward very-long-chain substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|O07610|LCFB_BACSU Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis (strain 168) GN=lcfB PE=2 SV=2

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 205/435 (47%), Gaps = 57/435 (13%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           DS+A R      +Y +L     R +  L    ++      K ++ A+L G          
Sbjct: 16  DSIACRFKDHMMTYQELNEYIQRFADGLQEAGME------KGDHLALLLGN--------- 60

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S +F+    G   +G + VP+   Y  +E+ +++ + D+  ++       + +++  +
Sbjct: 61  --SPDFIIAFFGALKAGIVVVPINPLYTPTEIGYMLTNGDVKAIVGVSQLLPLYESM-HE 117

Query: 136 SGAKFSLI---------PPV--PNVSSETTVFDQ-----SQAEKMDGQRGEDPALIVYTS 179
           S  K  L+         P    P V  + T F +     S A++      +D A+I+YTS
Sbjct: 118 SLPKVELVILCQTGEAEPEAADPEVRMKMTTFAKILRPTSAAKQNQEPVPDDTAVILYTS 177

Query: 180 GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239
           GTTGKPKG + TH+++ +    +         D  +  LP+ HV  L   + APL +GAT
Sbjct: 178 GTTGKPKGAMLTHQNLYSNANDVAGYLGMDERDNVVCALPMFHVFCLTVCMNAPLMSGAT 237

Query: 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299
           V   P+FS   +++  ++          +  T F GVPTMY  L Q       +  +   
Sbjct: 238 VLIEPQFSPASVFKLVKQ----------QQATIFAGVPTMYNYLFQHENGKKDDFSS--- 284

Query: 300 SAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFV-MAISNPLRGARKAGTVG 358
                +RL + G +++P+ ++  +E   G  +LE YG++E   +   NP    RK G++G
Sbjct: 285 -----IRLCISGGASMPVALLTAFEEKFGVTILEGYGLSEASPVTCFNPFDRGRKPGSIG 339

Query: 359 NPLPGVQVKIAEDESGSD--AAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDT 416
             +  V+ K+  D  G +  A  VGE+ VK P++ K Y+K+P  T+ +   DG+  TGD 
Sbjct: 340 TSILHVENKVV-DPLGRELPAHQVGELIVKGPNVMKGYYKMPMETEHALK-DGWLYTGDL 397

Query: 417 GKQDEDGYYIILGRK 431
            ++DEDGY+ I+ RK
Sbjct: 398 ARRDEDGYFYIVDRK 412

Involved in the degradation of long-chain fatty acids.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P94547|LCFA_BACSU Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis (strain 168) GN=lcfA PE=3 SV=1

 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 202/455 (44%), Gaps = 79/455 (17%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  AI    K  ++  + + AL++++ L  N L+      K +  AV+   C        
Sbjct: 39  DKTAISFYGKKLTFHDILTDALKLAAFLQCNGLQ------KGDRVAVMLPNCP------- 85

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------------- 120
               + V    G  F+G I V     Y E EL + + D+ +S+++               
Sbjct: 86  ----QTVISYYGVLFAGGIVVQTNPLYTEHELEYQLRDAQVSVIITLDLLFPKAIKMKTL 141

Query: 121 ---------STEDY----REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAE----- 162
                    S +DY    + +L  +  K            N+ +  +   Q + E     
Sbjct: 142 SIVDQILITSVKDYLPFPKNILYPLTQKQKVHIDF-DKTANIHTFASCMKQEKTELLTIP 200

Query: 163 KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEY---TSADQFLHCLP 219
           K+D +   D A++ YT GTTG PKGV+ TH++I A  +M   AW Y     A++ L  +P
Sbjct: 201 KIDPEH--DIAVLQYTGGTTGAPKGVMLTHQNILANTEMCA-AWMYDVKEGAEKVLGIVP 257

Query: 220 LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM 279
             HV+GL   +   +  G  +  +PKF      +   +  P          T F G PT+
Sbjct: 258 FFHVYGLTAVMNYSIKLGFEMILLPKFDPLETLKIIDKHKP----------TLFPGAPTI 307

Query: 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
           Y  L+        ELQ    S+ K     + GS+ALP+ V Q++E +TG +L+E YG++E
Sbjct: 308 YIGLLH-----HPELQHYDLSSIKSC---LSGSAALPVEVKQKFEKVTGGKLVEGYGLSE 359

Query: 340 FV-MAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV--GEICVKSPSLFKEYWK 396
              +  +N + G  K G++G P P     I  +E+G  AA    GEI VK P + K YW 
Sbjct: 360 ASPVTHANFIWGKNKPGSIGCPWPSTDAAIYSEETGELAAPYEHGEIIVKGPQVMKGYWN 419

Query: 397 LPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
            P+ T  +   DG+  TGD G  DE+G++ I  RK
Sbjct: 420 KPEETA-AVLRDGWLFTGDMGYMDEEGFFYIADRK 453

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q0K844|SAUT_CUPNH Probable sulfoacetate--CoA ligase OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=sauT PE=2 SV=1

 Score =  143 bits (360), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 120/420 (28%), Positives = 194/420 (46%), Gaps = 35/420 (8%)

Query: 18  VAIRADQ---KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
           +A+RA Q   K Y     +  AL   +L        T   T   + A    G G  + + 
Sbjct: 17  IAVRAAQWPDKPYLLSPDSGHALTFGAL-------ATDAGTLGRSYAAAGLGSGQTVSVY 69

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
                +    +LGT   G +  P+ L    ++L +++  SD  +V +  D    ++    
Sbjct: 70  LPNGEQTARLLLGTMACGLVVNPINLLCQPAQLRYILAHSDTRLVFTWPDGEAAIREALR 129

Query: 135 KSGAKFSLIPPVPNVSSETTV-FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK 193
           ++G    ++   P+ +S   +      A  +   + + PAL++YTSGTTG PKGV+ T +
Sbjct: 130 EAGLDVPVLVTAPDANSLPALPATHDAASPLPPPQPDAPALLMYTSGTTGTPKGVLLTQR 189

Query: 194 SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQ 253
           ++ A    ++       AD+ L  LPL+H++GL    +APL  G +V    +FS    WQ
Sbjct: 190 NLVANGTNVSREHCLGPADRVLATLPLYHINGLVVTAIAPLVHGGSVVMPMRFSASAFWQ 249

Query: 254 RWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313
                     + A    T    VPT+   L+      D   QA +      +R     S+
Sbjct: 250 ----------DSARHGCTWLNVVPTIIAYLLN-----DPHGQAPAG-----VRFCRSASA 289

Query: 314 ALPLPVMQQWETITGHRLLERYGMTEFVM-AISNPLR-GARKAGTVGNPLPGVQVKI-AE 370
           ALP    + +E   G  ++E  GMTE    A SNPL  G R+ G++G P  G + ++   
Sbjct: 290 ALPPEHHRAFEARFGIGVIETMGMTETAAPAFSNPLDPGQRRIGSIGRP-SGTRARVLGR 348

Query: 371 DESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
           D   +    VGEI ++  S+   Y+K P +T+++FT DG+ +TGD G +D DGY+ I GR
Sbjct: 349 DGKPAPDGQVGEIVLQGESVMAGYYKAPDITREAFTHDGWLRTGDLGYRDADGYFYISGR 408

Catalyzes the CoA- and ATP-dependent conversion of sulfoacetate to sulfoacetyl-CoA and AMP.

Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|O74976|FAT2_SCHPO Putative peroxisomal-coenzyme A synthetase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.03c PE=1 SV=1

 Score =  138 bits (348), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 168/383 (43%), Gaps = 37/383 (9%)

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
           A L    G  + I      EFV       +   I  PL  +Y +SE    + D    +V+
Sbjct: 45  ASLGIKVGDPVNIAIPNGLEFVVAFYAVSWQRAICGPLNSNYKQSEFEFYIDDLKSKLVI 104

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVS----SETTVFDQSQAEKMDGQRG------E 170
             E    V  N  +   AK  L   V  ++    S        +  K++  +       +
Sbjct: 105 VPEG--SVAANTPAVRAAK-KLSVAVAELAWCPKSRLVRIVHFEGAKINAPQPLGLPQPD 161

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230
           D  L+++TSGTTG+PK V  THK++   +  +T ++     D     +PL HVHGL   L
Sbjct: 162 DVMLVLHTSGTTGRPKVVPLTHKNLCRSIHNITTSYRLDPRDTSYVVMPLFHVHGLLCGL 221

Query: 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
           L+ L +G      PKFS    W+ + +             T +T VPT++  L       
Sbjct: 222 LSTLASGGCAVVPPKFSAHSFWKEFIQY----------GATWYTAVPTIHQIL------- 264

Query: 291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAI-SNPLR 349
              L+        ++R +   SS L  PV+ + E      +LE Y MTE    + +NPL 
Sbjct: 265 ---LRTPPPKPLPRIRFIRSCSSPLAPPVLSKLEATFRAPVLEAYAMTEASHQMTTNPLP 321

Query: 350 G-ARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTA 407
               K  +VG P  GV++KI + +      G  GEICV+  ++ K Y   P   K SFT 
Sbjct: 322 PLVHKPHSVGKPF-GVELKILDQKGNEMPQGKEGEICVRGINVTKGYLNNPAANKSSFTK 380

Query: 408 DGFFKTGDTGKQDEDGYYIILGR 430
           D FF+TGD GK D+DGY  I GR
Sbjct: 381 DRFFRTGDEGKLDKDGYVFITGR 403

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O53306|FAC13_MYCTU Long-chain-fatty-acid--CoA ligase FadD13 OS=Mycobacterium tuberculosis GN=fadD13 PE=1 SV=1

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 167/383 (43%), Gaps = 59/383 (15%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ ++   S EF     G    G +AVP+       E+  ++ DS   +V+       
Sbjct: 54  GDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP 113

Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFD----QSQAEKMDGQRGEDPAL--------- 174
           V+  + +++       PP        TV D     S AE++     ++PA+         
Sbjct: 114 VIDAIRAQAD------PP-------GTVTDWIGADSLAERLRSAAADEPAVECGGDDNLF 160

Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           I+YTSGTTG PKGVVHTH+S+ +         +    D+ L  LP+ HV  L   + + +
Sbjct: 161 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM 220

Query: 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM--YTRLIQGYEAMDT 292
             G T+  MP+F    +W    E          E +     VP +  + R +  +  +D 
Sbjct: 221 R-GVTLISMPQFDATKVWSLIVE----------ERVCIGGAVPAILNFMRQVPEFAELD- 268

Query: 293 ELQAASASAAKQLRLMMCGSSALPLPVMQQW-----ETITGHRLLERYGMTEFVMAISNP 347
                    A   R  + G + +P  +++ +     E + G+ L E  G    +++    
Sbjct: 269 ---------APDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSED-- 317

Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTA 407
               RKAG+ G       V +  D+      G GE+ +KS  L KEYW  P+ T+D+F  
Sbjct: 318 --ALRKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD- 374

Query: 408 DGFFKTGDTGKQDEDGYYIILGR 430
           +G+F+TGD G+ D++GY  I  R
Sbjct: 375 NGWFRTGDIGEIDDEGYLYIKDR 397

Required for maintaining the appropriate mycolic acid composition and permeability of the envelope on its exposure to acidic pH. Catalyzes the activation of long-chain fatty acids as acyl-coenzyme A (acyl-CoA), which are then transferred to the multifunctional polyketide synthase (PKS) type III for further chain extension. It has preference for the fatty acid with long chain length in the following order: hexacosanoic acid (C26), tetracosanoic acid (C24) and palmitic acid (C16).

Mycobacterium tuberculosis (taxid: 1773)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	435
380042380	564	acyl-activating enzyme 10 [Cannabis sati	0.988	0.762	0.713	0.0
225442581	552	PREDICTED: acyl-CoA synthetase family me	0.986	0.777	0.747	0.0
21536867	544	putative long-chain acyl-CoA synthetase	0.977	0.781	0.722	0.0
9294464	608	long-chain-fatty-acid-CoA ligase-like pr	0.981	0.702	0.715	0.0
224054376	539	predicted protein [Populus trichocarpa]	0.965	0.779	0.721	0.0
297830202	608	hypothetical protein ARALYDRAFT_318392 [	0.979	0.700	0.715	0.0
18401035	544	putative long-chain acyl-CoA synthetase	0.979	0.783	0.718	0.0
255549928	545	AMP dependent CoA ligase, putative [Rici	0.974	0.777	0.731	1e-179
297743247	583	unnamed protein product [Vitis vinifera]	0.986	0.735	0.698	1e-178
356523048	606	PREDICTED: acyl-CoA synthetase family me	0.958	0.688	0.681	1e-173

>gi|380042380|gb|AFD33354.1| acyl-activating enzyme 10 [Cannabis sativa]

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/446 (71%), Positives = 358/446 (80%), Gaps = 16/446 (3%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEV K   K+GS AR+ VAIRADQKSYSY QL SSA  I SLLC  +LK   E  K    
Sbjct: 1   MEVLKEVAKEGSAAREGVAIRADQKSYSYKQLISSAQSICSLLCGTELKAIHEAGKQARP 60

Query: 61  AV-------LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHD 113
           +             GARIGIVAKPS EFVAGVLGTW SG +AVPLALSYPE+ELLHVM+D
Sbjct: 61  SASINGAGGHGHLGGARIGIVAKPSAEFVAGVLGTWLSGGVAVPLALSYPEAELLHVMND 120

Query: 114 SDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR----- 168
           SDISM+LSTED++E++QN+A+K+ A+FSLIP VP+  S+    D  Q   +         
Sbjct: 121 SDISMILSTEDHQELMQNIAAKTSAQFSLIPSVPSSCSQEVAVDHRQTGDISTDSILLNR 180

Query: 169 ---GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
               E+PALIVYTSGTTGKPKGVVHTH+SI AQVQ L +AWEYT ADQFLHCLPLHHVHG
Sbjct: 181 EISNENPALIVYTSGTTGKPKGVVHTHQSISAQVQTLAKAWEYTPADQFLHCLPLHHVHG 240

Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
           LFNAL APLYA +TVEF+PKFSVRGIWQRWRESYP +  +A + IT FTGVPTMYTRLIQ
Sbjct: 241 LFNALFAPLYARSTVEFLPKFSVRGIWQRWRESYPTSETKANDCITVFTGVPTMYTRLIQ 300

Query: 286 GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS 345
           GYEAMD EL+ ASASAAKQLRLMMCGSSALP+PVMQQW+TITGHRLLERYGMTEFVMAIS
Sbjct: 301 GYEAMDPELKEASASAAKQLRLMMCGSSALPVPVMQQWQTITGHRLLERYGMTEFVMAIS 360

Query: 346 NPLRGARKAGTVGNPLPGVQVKI-AEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDS 404
           NPL+G RK+GTVG P PGV+V+I AEDE+G DA GVGE+CV+SPSLFKEYW+LP+VTK S
Sbjct: 361 NPLKGERKSGTVGKPFPGVEVRILAEDENGDDATGVGELCVRSPSLFKEYWRLPEVTKAS 420

Query: 405 FTADGFFKTGDTGKQDEDGYYIILGR 430
           FT DGFFKTGD GK DEDGYY+ILGR
Sbjct: 421 FTDDGFFKTGDAGKVDEDGYYVILGR 446

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442581|ref|XP_002279139.1| PREDICTED: acyl-CoA synthetase family member 3, mitochondrial-like [Vitis vinifera]

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/436 (74%), Positives = 373/436 (85%), Gaps = 7/436 (1%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEV KA  ++GS   +SVAIRA+QKSYSY+QL SSA +ISSLLC+ D+K T   +K+++S
Sbjct: 1   MEVIKAVARQGSATAESVAIRANQKSYSYNQLISSARKISSLLCNGDIKPTYGVSKHKHS 60

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                G GARIGIVAKPS EFVAG+LGTWFSG +AVPLALSYPE+ELLHVM+DSD+SM+L
Sbjct: 61  GNGHLG-GARIGIVAKPSVEFVAGILGTWFSGGVAVPLALSYPEAELLHVMNDSDVSMIL 119

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA------EKMDGQRGEDPAL 174
           STEDYRE+++NVA+KS A+FSLIPPVP++ S T+  D  Q       + + G+  EDPAL
Sbjct: 120 STEDYRELMENVAAKSSAQFSLIPPVPSIPSPTSARDHPQTGEIVADKSLQGEIDEDPAL 179

Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           I+YTSGTTGKPKGVVHTHKSI++QVQ+LTEAW YTSADQFLHCLPLHHVHGLFNALLAPL
Sbjct: 180 IIYTSGTTGKPKGVVHTHKSINSQVQILTEAWGYTSADQFLHCLPLHHVHGLFNALLAPL 239

Query: 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL 294
           YAG+TVEFMPKFSVRGIWQRWRES+P +G +  +AIT FTGVPTMYTRLIQGYEAMD EL
Sbjct: 240 YAGSTVEFMPKFSVRGIWQRWRESHPKDGTKVDDAITVFTGVPTMYTRLIQGYEAMDPEL 299

Query: 295 QAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKA 354
           QAASASAA +LRLMMCGSSALP PVMQQWETITGHRLLERYGMTEFVMAISNPL+G RK 
Sbjct: 300 QAASASAASKLRLMMCGSSALPYPVMQQWETITGHRLLERYGMTEFVMAISNPLKGVRKG 359

Query: 355 GTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTG 414
           GTVG P PGVQVKI  DES ++  GVGE+C+KSPSLFKEYWKLP+VTK+SF   GFFKTG
Sbjct: 360 GTVGKPFPGVQVKILADESETETTGVGELCIKSPSLFKEYWKLPEVTKESFIDGGFFKTG 419

Query: 415 DTGKQDEDGYYIILGR 430
           D  K D+DGYYIILGR
Sbjct: 420 DAVKVDDDGYYIILGR 435

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536867|gb|AAM61199.1| putative long-chain acyl-CoA synthetase [Arabidopsis thaliana]

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/433 (72%), Positives = 360/433 (83%), Gaps = 8/433 (1%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKN-EN 59
           MEVFKAA+ + S + D +AI+AD KSYSY QL SSALRIS L   +D     ++TK  E 
Sbjct: 1   MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 60

Query: 60  SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
              L G   ARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++
Sbjct: 61  FGSLKG---ARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLL 117

Query: 120 LSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVY 177
           LSTED+ E ++ +A+KSGA+F LIPPV N +SET   +Q Q +  +  G+  +DPALIVY
Sbjct: 118 LSTEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVY 177

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
           TSGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA 
Sbjct: 178 TSGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYAR 237

Query: 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
           + VEF+PKFSV GIW+RWRESYPVN  +  ++IT FTGVPTMYTRLIQGYEAMD E+Q +
Sbjct: 238 SLVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDS 297

Query: 298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTV 357
           SA AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTEFVMA+SNPLRGARKAGTV
Sbjct: 298 SAFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGARKAGTV 357

Query: 358 GNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTG 417
           G PLPGV+ KI EDE  +DA GVGEICVKSPSLFKEYW LP+VTK+SFT DG+FKTGD G
Sbjct: 358 GKPLPGVEAKIKEDE--NDANGVGEICVKSPSLFKEYWNLPEVTKESFTEDGYFKTGDAG 415

Query: 418 KQDEDGYYIILGR 430
           + DEDGYY+ILGR
Sbjct: 416 RVDEDGYYVILGR 428

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294464|dbj|BAB02683.1| long-chain-fatty-acid-CoA ligase-like protein [Arabidopsis thaliana]

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/433 (71%), Positives = 357/433 (82%), Gaps = 6/433 (1%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEVFKAA+ + S + D +AI+AD KSYSY QL SSALRIS L   +D     ++TK    
Sbjct: 65  MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 124

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                  GARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++L
Sbjct: 125 --FGSLKGARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLLL 182

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVYT 178
           STED+ E ++ +A+KSGA+F LIPPV N +SET   +Q Q +  +  G+  +DPALIVYT
Sbjct: 183 STEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVYT 242

Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           SGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA +
Sbjct: 243 SGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYARS 302

Query: 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS 298
            VEF+PKFSV GIW+RWRESYPVN  +  ++IT FTGVPTMYTRLIQGYEAMD E+Q +S
Sbjct: 303 LVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDSS 362

Query: 299 ASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVG 358
           A AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTEFVMA+SNPLRGAR AGTVG
Sbjct: 363 AFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGARNAGTVG 422

Query: 359 NPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGK 418
            PLPGV+ KI EDE  +DA GVGEICVKSPSLFKEYW LP+VTK+SFT DG+FKTGD G+
Sbjct: 423 KPLPGVEAKIKEDE--NDANGVGEICVKSPSLFKEYWNLPEVTKESFTEDGYFKTGDAGR 480

Query: 419 QDEDGYYIILGRK 431
            DEDGYY+ILGR 
Sbjct: 481 VDEDGYYVILGRN 493

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054376|ref|XP_002298229.1| predicted protein [Populus trichocarpa] gi|222845487|gb|EEE83034.1| predicted protein [Populus trichocarpa]

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/434 (72%), Positives = 365/434 (84%), Gaps = 14/434 (3%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEV K  Y++G+ A DS+AIRA+ KSYSY QL SSA  IS LLC++ L+T          
Sbjct: 1   MEVVKKVYRQGTAAADSIAIRAEHKSYSYKQLISSAWEISDLLCNSGLETVDG------- 53

Query: 61  AVLAGGC----GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDI 116
               GGC    GARIGIVAKPS EFVAG+L TWFSG +AVPLALSYPE+ELLHVM+D++I
Sbjct: 54  ---VGGCKHLGGARIGIVAKPSAEFVAGILATWFSGGVAVPLALSYPETELLHVMNDAEI 110

Query: 117 SMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
           SMVLSTED++E++QNVA K  A+FSLIP V  +SS  +V D SQ E++  ++G+DPALI+
Sbjct: 111 SMVLSTEDHQELMQNVADKCAAQFSLIPSVHRISSHESVHDHSQVEEIALEKGDDPALII 170

Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA 236
           YTSGTTGKPKG VHTHKSI AQVQ L EAWEY+S DQFL+CLPLHHVHG FN+L AP+YA
Sbjct: 171 YTSGTTGKPKGAVHTHKSITAQVQTLAEAWEYSSTDQFLNCLPLHHVHGFFNSLFAPIYA 230

Query: 237 GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296
           G+TVEFMPKFSVRGIWQRWRESYP NG++A +AIT FTGVPT+Y+RLIQGY AMD++ QA
Sbjct: 231 GSTVEFMPKFSVRGIWQRWRESYPPNGSKADDAITVFTGVPTIYSRLIQGYGAMDSDQQA 290

Query: 297 ASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGT 356
           ASASAA+QLRLMM GSSALPLPVMQ+WE ITGHRLLERYGMTEFVMAISNPLRG RKAGT
Sbjct: 291 ASASAARQLRLMMSGSSALPLPVMQEWEAITGHRLLERYGMTEFVMAISNPLRGVRKAGT 350

Query: 357 VGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDT 416
           VG P PGVQVKIAED++ +D  GVGE+C++SPS+FKEYWKLP+VT+DSFT DGFF+TGD 
Sbjct: 351 VGKPFPGVQVKIAEDQNENDTTGVGELCIRSPSMFKEYWKLPQVTEDSFTDDGFFRTGDA 410

Query: 417 GKQDEDGYYIILGR 430
           GK DEDGYY+ILGR
Sbjct: 411 GKIDEDGYYVILGR 424

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830202|ref|XP_002882983.1| hypothetical protein ARALYDRAFT_318392 [Arabidopsis lyrata subsp. lyrata] gi|297328823|gb|EFH59242.1| hypothetical protein ARALYDRAFT_318392 [Arabidopsis lyrata subsp. lyrata]

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/433 (71%), Positives = 356/433 (82%), Gaps = 7/433 (1%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEVFKAA+ +GS + D +AI+AD KSYSY QL SSA RIS L  + D     E  K E  
Sbjct: 66  MEVFKAAFSEGSNSCDRIAIKADGKSYSYGQLTSSAFRISKLFSNEDTTNGGETKKYEGF 125

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
             L G   ARIGIVAKPS EFVAGV+GTWFSG +AVPLALSYPE+ELLHVM+DSDIS++L
Sbjct: 126 GSLKG---ARIGIVAKPSAEFVAGVMGTWFSGGVAVPLALSYPEAELLHVMNDSDISLLL 182

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVYT 178
           STED+ E ++ +A+KSGA+F LIPPV N +SET   +Q Q +  +  G+  +DPALIVYT
Sbjct: 183 STEDHSETMKTIAAKSGAQFHLIPPVVNSTSETVARNQFQDDSFEAEGKFLDDPALIVYT 242

Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           SGTTGKPKGVVHTH SI++QV+MLTEAWEYTS D FLHCLPLHHVHGLFNAL APLYA +
Sbjct: 243 SGTTGKPKGVVHTHNSINSQVKMLTEAWEYTSTDHFLHCLPLHHVHGLFNALFAPLYARS 302

Query: 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS 298
            VEF+PKFSV GIW+RWRESYP N  +  +AIT FTGVPTMYTRLIQGYEAMD E+Q +S
Sbjct: 303 LVEFLPKFSVSGIWRRWRESYPQNDEKNNDAITVFTGVPTMYTRLIQGYEAMDKEMQDSS 362

Query: 299 ASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVG 358
           A AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTEFVMA+SNPLRGARKAGTVG
Sbjct: 363 AFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGARKAGTVG 422

Query: 359 NPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGK 418
            PLPGV+ KI EDE  +D+ GVGEICVKSPSLFKEYW LP+VTK+SFT DG+FKTGD G+
Sbjct: 423 KPLPGVEAKIKEDE--NDSNGVGEICVKSPSLFKEYWNLPEVTKESFTEDGYFKTGDAGR 480

Query: 419 QDEDGYYIILGRK 431
            DEDGYY+ILGR 
Sbjct: 481 VDEDGYYVILGRN 493

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401035|ref|NP_566537.1| putative long-chain acyl-CoA synthetase [Arabidopsis thaliana] gi|75299745|sp|Q8H151.1|AAE13_ARATH RecName: Full=Malonate--CoA ligase; AltName: Full=Acyl-activating enzyme 13; AltName: Full=Malonyl-CoA synthetase gi|23397257|gb|AAN31910.1| putative long-chain acyl-CoA synthetase [Arabidopsis thaliana] gi|29893233|gb|AAP03025.1| acyl-activating enzyme 13 [Arabidopsis thaliana] gi|332642258|gb|AEE75779.1| putative long-chain acyl-CoA synthetase [Arabidopsis thaliana]

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/434 (71%), Positives = 359/434 (82%), Gaps = 8/434 (1%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKN-EN 59
           MEVFKAA+ + S + D +AI+AD KSYSY QL SSALRIS L   +D     ++TK  E 
Sbjct: 1   MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 60

Query: 60  SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
              L G   ARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++
Sbjct: 61  FGSLKG---ARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLL 117

Query: 120 LSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVY 177
           LSTED+ E ++ +A+KSGA+F LIPPV N +SET   +Q Q +  +  G+  +DPALIVY
Sbjct: 118 LSTEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVY 177

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
           TSGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA 
Sbjct: 178 TSGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYAR 237

Query: 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
           + VEF+PKFSV GIW+RWRESYPVN  +  ++IT FTGVPTMYTRLIQGYEAMD E+Q +
Sbjct: 238 SLVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDS 297

Query: 298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTV 357
           SA AA++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTEFVMA+SNPLRGAR AGTV
Sbjct: 298 SAFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGARNAGTV 357

Query: 358 GNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTG 417
           G PLPGV+ KI EDE  +DA GVGEICVKSPSLFKEYW LP+VTK+SFT DG+FKTGD G
Sbjct: 358 GKPLPGVEAKIKEDE--NDANGVGEICVKSPSLFKEYWNLPEVTKESFTEDGYFKTGDAG 415

Query: 418 KQDEDGYYIILGRK 431
           + DEDGYY+ILGR 
Sbjct: 416 RVDEDGYYVILGRN 429

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549928|ref|XP_002516015.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223544920|gb|EEF46435.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 318/435 (73%), Positives = 356/435 (81%), Gaps = 11/435 (2%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEV ++ YK+GS A DS+AIRADQKSY+Y QL SSA  +S LLC+  LKT     +N   
Sbjct: 1   MEVVRSVYKQGSAAADSIAIRADQKSYTYAQLISSAWNVSKLLCNAGLKTADGVGENGQL 60

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                  GARIGIVAKPS EFVAGVL TWFSG +AVPLALSYPE+ELLHVM+DS+ISMVL
Sbjct: 61  G------GARIGIVAKPSAEFVAGVLATWFSGGVAVPLALSYPETELLHVMNDSEISMVL 114

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSG 180
           STEDY E++QNVA+KS A+FS+IP V +  S+T+    SQ   +D  RGEDPALIVYTSG
Sbjct: 115 STEDYCELMQNVAAKSAAQFSIIPSVASFPSQTSAHCHSQIGAVDADRGEDPALIVYTSG 174

Query: 181 TTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG---LFNAL--LAPLY 235
           TTGKPKG VHTHKSI AQVQ L EAWEYTS DQFLHCLPLHH+     L N +   A ++
Sbjct: 175 TTGKPKGAVHTHKSIFAQVQTLAEAWEYTSTDQFLHCLPLHHILEFIWLVNLVGCNAYVF 234

Query: 236 AGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQ 295
               VEFMPKFSVRGIWQRW+ESYP+NGN+AG+AIT FTGVPTMYTRLIQGYEAM+ ELQ
Sbjct: 235 TFLKVEFMPKFSVRGIWQRWQESYPLNGNKAGDAITVFTGVPTMYTRLIQGYEAMNPELQ 294

Query: 296 AASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAG 355
           AASASAAKQLRLMMCGSSALPLPVM++WE ITGHRLLERYGMTEFVMAISNP RG RKAG
Sbjct: 295 AASASAAKQLRLMMCGSSALPLPVMERWEAITGHRLLERYGMTEFVMAISNPFRGERKAG 354

Query: 356 TVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGD 415
           TVG P PGVQVKI +D+S +D  GVGE+CVKSPSLFKEYWKLPKVT +SFT DGFFKTGD
Sbjct: 355 TVGKPFPGVQVKIVQDDSENDTTGVGELCVKSPSLFKEYWKLPKVTDESFTDDGFFKTGD 414

Query: 416 TGKQDEDGYYIILGR 430
            GK DEDGYY+ILGR
Sbjct: 415 AGKIDEDGYYVILGR 429

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743247|emb|CBI36114.3| unnamed protein product [Vitis vinifera]

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 326/467 (69%), Positives = 373/467 (79%), Gaps = 38/467 (8%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEV KA  ++GS   +SVAIRA+QKSYSY+QL SSA +ISSLLC+ D+K T   +K+++S
Sbjct: 1   MEVIKAVARQGSATAESVAIRANQKSYSYNQLISSARKISSLLCNGDIKPTYGVSKHKHS 60

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                G GARIGIVAKPS EFVAG+LGTWFSG +AVPLALSYPE+ELLHVM+DSD+SM+L
Sbjct: 61  GNGHLG-GARIGIVAKPSVEFVAGILGTWFSGGVAVPLALSYPEAELLHVMNDSDVSMIL 119

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA------EKMDGQRGEDPAL 174
           STEDYRE+++NVA+KS A+FSLIPPVP++ S T+  D  Q       + + G+  EDPAL
Sbjct: 120 STEDYRELMENVAAKSSAQFSLIPPVPSIPSPTSARDHPQTGEIVADKSLQGEIDEDPAL 179

Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH------------ 222
           I+YTSGTTGKPKGVVHTHKSI++QVQ+LTEAW YTSADQFLHCLPLHH            
Sbjct: 180 IIYTSGTTGKPKGVVHTHKSINSQVQILTEAWGYTSADQFLHCLPLHHIHKTIFRILKIS 239

Query: 223 -------------------VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNG 263
                              VHGLFNALLAPLYAG+TVEFMPKFSVRGIWQRWRES+P +G
Sbjct: 240 ISHNFDMKFLHGSLTLTIHVHGLFNALLAPLYAGSTVEFMPKFSVRGIWQRWRESHPKDG 299

Query: 264 NRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW 323
            +  +AIT FTGVPTMYTRLIQGYEAMD ELQAASASAA +LRLMMCGSSALP PVMQQW
Sbjct: 300 TKVDDAITVFTGVPTMYTRLIQGYEAMDPELQAASASAASKLRLMMCGSSALPYPVMQQW 359

Query: 324 ETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEI 383
           ETITGHRLLERYGMTEFVMAISNPL+G RK GTVG P PGVQVKI  DES ++  GVGE+
Sbjct: 360 ETITGHRLLERYGMTEFVMAISNPLKGVRKGGTVGKPFPGVQVKILADESETETTGVGEL 419

Query: 384 CVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
           C+KSPSLFKEYWKLP+VTK+SF   GFFKTGD  K D+DGYYIILGR
Sbjct: 420 CIKSPSLFKEYWKLPEVTKESFIDGGFFKTGDAVKVDDDGYYIILGR 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523048|ref|XP_003530154.1| PREDICTED: acyl-CoA synthetase family member 3, mitochondrial-like [Glycine max]

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 300/440 (68%), Positives = 351/440 (79%), Gaps = 23/440 (5%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           MEV KA  K    A +SVAIRADQKSYSY QL +SA +IS+LLC +D +T          
Sbjct: 64  MEVVKAIAKHEPAAPESVAIRADQKSYSYKQLITSAQKISNLLCGSDAQT---------- 113

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                  GARIGIVAKPS EFVAG+LG W SG +AVPLA SYPE ELL+V+++SD+S +L
Sbjct: 114 ---GNLGGARIGIVAKPSAEFVAGILGIWLSGGVAVPLATSYPEVELLYVINNSDVSAIL 170

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD---------GQRGED 171
           STED+ E++Q+VA+KS ++F  +PPV N SSE +    SQ   +          G+  ED
Sbjct: 171 STEDHTEIMQSVANKSSSQFFHLPPVLNKSSEKSRDKHSQNGGIHTDKILLDKFGRSSED 230

Query: 172 PALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALL 231
           PALI+YTSGTTGKPKGVVHTH+SI +QVQ LT+AWEY+SADQFLHCLPLHHVHGLFN L+
Sbjct: 231 PALILYTSGTTGKPKGVVHTHRSIISQVQTLTKAWEYSSADQFLHCLPLHHVHGLFNGLM 290

Query: 232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD 291
           APLYAG+TVEF+PKFSVRG+WQRWRESYP +G++A EAIT FTGVPT+Y RLIQGY AMD
Sbjct: 291 APLYAGSTVEFLPKFSVRGVWQRWRESYPTDGSKAEEAITVFTGVPTIYARLIQGYHAMD 350

Query: 292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGA 351
            ELQAAS SAAK LRLMMCGSSALPLPVMQ+WE ITGHRLLERYGMTEFVMA+SNPL+G 
Sbjct: 351 PELQAASVSAAKNLRLMMCGSSALPLPVMQEWEAITGHRLLERYGMTEFVMALSNPLKGE 410

Query: 352 RKAGTVGNPLPGVQVK-IAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGF 410
           RK GTVG P PG+QVK IA++ES +   G+GE+C+KSPSLFKEYWKLP+VTK+SFT DGF
Sbjct: 411 RKPGTVGKPFPGIQVKIIADEESVNGNTGMGELCIKSPSLFKEYWKLPEVTKESFTDDGF 470

Query: 411 FKTGDTGKQDEDGYYIILGR 430
           FKTGD    DEDGY+IILGR
Sbjct: 471 FKTGDAVTTDEDGYFIILGR 490

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	435
TAIR|locus:2093432	544	AAE13 "acyl activating enzyme	0.977	0.781	0.690	3.7e-158
UNIPROTKB|Q4G176	576	ACSF3 "Acyl-CoA synthetase fam	0.685	0.517	0.413	3.3e-71
UNIPROTKB|Q58DN7	586	ACSF3 "Acyl-CoA synthetase fam	0.687	0.510	0.410	8.6e-71
UNIPROTKB|F1P6L8	600	ACSF3 "Uncharacterized protein	0.659	0.478	0.416	8.7e-69
MGI|MGI:2182591	583	Acsf3 "acyl-CoA synthetase fam	0.811	0.605	0.400	3.1e-67
UNIPROTKB|F1NXK4	456	ACSF3 "Uncharacterized protein	0.671	0.640	0.407	5.4e-67
ASPGD|ASPL0000061619	533	AN0562 [Emericella nidulans (t	0.804	0.656	0.412	6.5e-67
RGD|1586037	583	Acsf3 "acyl-CoA synthetase fam	0.809	0.603	0.399	8.2e-67
DICTYBASE|DDB_G0289539	546	DDB_G0289539 "Acyl-CoA synthet	0.825	0.657	0.393	8.8e-63
TIGR_CMR|SPO_A0282	505	SPO_A0282 "long-chain-fatty-ac	0.349	0.300	0.475	3.6e-54

TAIR|locus:2093432 AAE13 "acyl activating enzyme 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 1541 (547.5 bits), Expect = 3.7e-158, P = 3.7e-158
 Identities = 299/433 (69%), Positives = 345/433 (79%)

Query:     1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQXXXXXXXXXXXXXXNDLKTTSEKTKN-EN 59
             MEVFKAA+ + S + D +AI+AD KSYSY Q              +D     ++TK  E 
Sbjct:     1 MEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNGGQETKKYEG 60

Query:    60 SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
                L G   ARIGIVAKPS EFVAGVLGTWFSG +AVPLALSYPE+ELLHVM+DSDIS++
Sbjct:    61 FGSLKG---ARIGIVAKPSAEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDSDISLL 117

Query:   120 LSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD--GQRGEDPALIVY 177
             LSTED+ E ++ +A+KSGA+F LIPPV N +SET   +Q Q +  +  G+  +DPALIVY
Sbjct:   118 LSTEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDPALIVY 177

Query:   178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
             TSGTTGKPKGVVHTH SI++QV+MLTEAWEYTSAD FLHCLPLHHVHGLFNAL APLYA 
Sbjct:   178 TSGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFAPLYAR 237

Query:   238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXX 297
             + VEF+PKFSV GIW+RWRESYPVN  +  ++IT FTGVPTMYTRLIQGYEAMD E+Q  
Sbjct:   238 SLVEFLPKFSVSGIWRRWRESYPVNDEKTNDSITVFTGVPTMYTRLIQGYEAMDKEMQDS 297

Query:   298 XXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTV 357
                  ++LRLMM GSSALP PVM QWE+ITGHRLLERYGMTEFVMA+SNPLRGAR AGTV
Sbjct:   298 SAFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGARNAGTV 357

Query:   358 GNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTG 417
             G PLPGV+ KI EDE+  DA GVGEICVKSPSLFKEYW LP+VTK+SFT DG+FKTGD G
Sbjct:   358 GKPLPGVEAKIKEDEN--DANGVGEICVKSPSLFKEYWNLPEVTKESFTEDGYFKTGDAG 415

Query:   418 KQDEDGYYIILGR 430
             + DEDGYY+ILGR
Sbjct:   416 RVDEDGYYVILGR 428

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016208 "AMP binding" evidence=ISS

GO:0016020 "membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0090409 "malonyl-CoA synthetase activity" evidence=IDA

GO:0090410 "malonate catabolic process" evidence=IMP

UNIPROTKB|Q4G176 ACSF3 "Acyl-CoA synthetase family member 3, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 592 (213.5 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
 Identities = 129/312 (41%), Positives = 184/312 (58%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             R+  +      +V     +W SG +AVPL   +P ++L +V+ DS  S+VL++++Y E+L
Sbjct:    97 RVSFLCANDASYVVAQWASWMSGGVAVPLYRKHPAAQLEYVICDSQSSVVLASQEYLELL 156

Query:   130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
               V  K G    L+P  P + +              G R +  A+I+YTSGTTG+PKGV+
Sbjct:   157 SPVVRKLGVP--LLPLTPAIYTGAVEEPAEVPVPEQGWRNKG-AMIIYTSGTTGRPKGVL 213

Query:   190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
              TH++I A V  L   W +T  D  LH LPLHHVHG+ NALL PL+ GAT   MP+FS +
Sbjct:   214 STHQNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNALLCPLWVGATCVMMPEFSPQ 273

Query:   250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXX---KQLR 306
              +W+++  S           I  F  VPT+YT+L++ Y+   T+            +++R
Sbjct:   274 QVWEKFLSSETPR-------INVFMAVPTIYTKLMEYYDRHFTQPHAQDFLRAVCEEKIR 326

Query:   307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGA-RKAGTVGNPLPGVQ 365
             LM+ GS+ALPLPV+++W+ ITGH LLERYGMTE  MA+S PL  A R  G+VG PLPGVQ
Sbjct:   327 LMVSGSAALPLPVLEKWKNITGHTLLERYGMTEIGMALSGPLTTAVRLPGSVGTPLPGVQ 386

Query:   366 VKIAEDESGSDA 377
             V+I  +    +A
Sbjct:   387 VRIVSENPQREA 398

GO:0005524 "ATP binding" evidence=IEA

GO:0016878 "acid-thiol ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IDA

GO:0090410 "malonate catabolic process" evidence=IDA

GO:0090409 "malonyl-CoA synthetase activity" evidence=IDA

GO:0006633 "fatty acid biosynthetic process" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q58DN7 ACSF3 "Acyl-CoA synthetase family member 3, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 590 (212.7 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
 Identities = 128/312 (41%), Positives = 186/312 (59%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             R+ ++      FV      W SG +AVPL   +P ++L + + DS  S+VL+  ++ E+L
Sbjct:    98 RVSLLCSNDVSFVVAQWAAWMSGGVAVPLYRKHPRAQLEYFIQDSRSSVVLAGPEHVELL 157

Query:   130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
               VA K G    L+P  P V       D  +   ++    +  A+I+YTSGTTG+PKGV+
Sbjct:   158 SPVAQKLGVP--LLPLPPTVYHGVAE-DPEEGLVLERNWRDRGAMIIYTSGTTGRPKGVL 214

Query:   190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
              TH +I A V  L   W +T  D  LH LPLHHVHG+ N LL PL+ GAT   +P+FS +
Sbjct:   215 STHDNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSAQ 274

Query:   250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE--LQXXXXXXXKQ-LR 306
              +W+++  S       A + I  F  VPT+Y++L+  Y+   T+  +Q       ++ +R
Sbjct:   275 LVWEKFLSS------EAPQ-INVFMAVPTIYSKLMDYYDKHFTQPHVQDFVRAVCEEKIR 327

Query:   307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
             LM+ GS+ALPLPV+++W+ ITGH LLERYGMTE  MA+SNPL  AR  G+VG PLPGV+V
Sbjct:   328 LMVSGSAALPLPVLEKWKGITGHTLLERYGMTEIGMALSNPLTAARLPGSVGTPLPGVEV 387

Query:   367 KIAEDESGSDAA 378
             +I  +    D++
Sbjct:   388 RIVSENPQKDSS 399

GO:0005739 "mitochondrion" evidence=IEA

GO:0090410 "malonate catabolic process" evidence=IEA

GO:0090409 "malonyl-CoA synthetase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1P6L8 ACSF3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 573 (206.8 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
 Identities = 129/310 (41%), Positives = 187/310 (60%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             R+  +      +V     +W SG IAVPL   +P +EL + + DS  S+VL+ ++Y E+L
Sbjct:   102 RVSFLCSNDVSYVVAQWASWMSGGIAVPLYKKHPPAELEYFIRDSRSSVVLAGQEYMELL 161

Query:   130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDG----QRGEDP-ALIVYTSGTTGK 184
             + V  K G     +P +P +SS  TV+  +  E  +G    Q   D  A+I+YTSGTTG+
Sbjct:   162 RPVVKKLG-----VPLLP-LSS--TVYGAAAEEPGEGKVWEQNWRDRGAMIMYTSGTTGR 213

Query:   185 PKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244
             PKGV+ TH +I A V  L   W ++  D  LH LPLHHVHG+ N LL PL+ GAT   +P
Sbjct:   214 PKGVLSTHHNIRAMVTGLVHKWAWSKHDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLP 273

Query:   245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE--LQXXXXXXX 302
             +F+ + +W++      + G      I  F  VPT+Y +L+  Y+   T+  +Q       
Sbjct:   274 EFNAQLVWEK------LLGCETPR-INVFMAVPTIYAKLMDYYDRHFTQPHVQDFVRAVC 326

Query:   303 KQ-LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPL 361
             ++ +RLM+ GS+ALPLPV+++W++ITGH LLERYGMTE  MA+SNPL   R  G+VG PL
Sbjct:   327 EERIRLMVSGSAALPLPVLEKWQSITGHTLLERYGMTEIGMALSNPLTTVRVPGSVGTPL 386

Query:   362 PGVQVKIAED 371
             PGV+V+I  +
Sbjct:   387 PGVEVRIVSE 396

GO:0003824 "catalytic activity" evidence=IEA

MGI|MGI:2182591 Acsf3 "acyl-CoA synthetase family member 3" [Mus musculus (taxid:10090)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 155/387 (40%), Positives = 225/387 (58%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             R+  +      +V     +W SG +AVPL   +PE++L + + DS  S+V+  ++Y E L
Sbjct:    97 RVSFLCSNDVSYVVAQWASWMSGGVAVPLYWKHPEAQLEYFIQDSRSSLVVVGQEYLERL 156

Query:   130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
               +A + G    L+P  P V    T     Q  +  G R    A+I YTSGTTG+PKG +
Sbjct:   157 SPLAQRLGVP--LLPLTPAVYHGATEKPTEQPVEESGWRDRG-AMIFYTSGTTGRPKGAL 213

Query:   190 HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
              TH+++ A V  L  +W +T  D  LH LPLHHVHG+ N LL PL+ GAT   +P+FS +
Sbjct:   214 STHRNLAAVVTGLVHSWAWTKNDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSAQ 273

Query:   250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE--LQXXXXXXXKQ-LR 306
              +W+++  S       A + IT F  VPT+Y++L+  Y+   T+  +Q       K+ +R
Sbjct:   274 QVWEKFLSS------EAPQ-ITVFMAVPTVYSKLLDYYDKHFTQPHVQDFVRAVCKERIR 326

Query:   307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
             LM+ GS+ALP+P++++W + TGH LLERYGMTE  MA+SNPL  AR  G+VG PLPGV+V
Sbjct:   327 LMVSGSAALPVPLLEKWRSATGHTLLERYGMTEIGMALSNPLTEARVPGSVGTPLPGVEV 386

Query:   367 KIAED--ESGSD----AAG--------------VGEICVKSPSLFKEYWKLPKVTKDSFT 406
             +I  +  + GS     A G               GE+ V+ PS+F+EYW  P+ TK +FT
Sbjct:   387 RIISENPQKGSPYIIHAEGNERGTKVTPGFEEKEGELLVRGPSVFREYWDKPEETKSAFT 446

Query:   407 ADGFFKTGDTGKQDEDGYYIILGRKGI 433
             +DG+F+TGDT    +D  Y I GR  +
Sbjct:   447 SDGWFRTGDTAVF-KDARYWIRGRTSV 472

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=ISO

GO:0006633 "fatty acid biosynthetic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016878 "acid-thiol ligase activity" evidence=ISO

GO:0090409 "malonyl-CoA synthetase activity" evidence=ISO

GO:0090410 "malonate catabolic process" evidence=ISO

UNIPROTKB|F1NXK4 ACSF3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 583 (210.3 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
 Identities = 125/307 (40%), Positives = 183/307 (59%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             RI  +      +V     +W SG IAVPL   +P  +L +V+ DS  ++V++ ++Y   +
Sbjct:    88 RISFLCPNDASYVVAQWASWMSGGIAVPLYKKHPVQQLEYVLEDSQSALVIAADEYVGKI 147

Query:   130 QNVASKSGAKFSLIPPVPNVSSE-TTVFDQSQAEKMDGQ-RGEDPALIVYTSGTTGKPKG 187
                A K G     +    + S++ T V D   A     + RG   A+I+YTSGTTG+PKG
Sbjct:   148 SPSAKKLGVPVLPLRSHSSGSADHTAVEDVPLASSASWKDRG---AMIIYTSGTTGRPKG 204

Query:   188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
             V+ TH+++ A    L E WE+   D  LH LPLHHVHG+ N LL PL+ GAT   +P+FS
Sbjct:   205 VLSTHENVQAVTTGLVEKWEWKQDDVILHVLPLHHVHGVINKLLCPLWVGATCIMLPEFS 264

Query:   248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXX---KQ 304
              + +W+++  S           ++ F  VPT+Y +LI+ Y+   ++ Q          + 
Sbjct:   265 AQMVWKKFLSSQ-------APRVSVFMAVPTIYAKLIEYYDEHFSQPQVQDFVRAFCQEN 317

Query:   305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGV 364
             +RLM+ GS+ALP+PV+++W+ ITGH LLERYGMTE  MA+SNPLRG R  G+VG PLPGV
Sbjct:   318 IRLMVSGSAALPVPVLKKWKAITGHTLLERYGMTEIGMALSNPLRGVRVPGSVGTPLPGV 377

Query:   365 QVKIAED 371
             +V+IA +
Sbjct:   378 EVRIATE 384

GO:0005739 "mitochondrion" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0090409 "malonyl-CoA synthetase activity" evidence=IEA

GO:0090410 "malonate catabolic process" evidence=IEA

ASPGD|ASPL0000061619 AN0562 [Emericella nidulans (taxid:162425)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 154/373 (41%), Positives = 211/373 (56%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL---STEDYR 126
             RI  +    +++       W SG I VPL  S+P  ELL+ + DSD S+++   + E + 
Sbjct:    69 RIAFLVPNGYDYAVTQWAVWASGGICVPLCTSHPVKELLYTIGDSDPSLIIIHPAFEKFE 128

Query:   127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
               L+   + +   F  + P     S   + + S          E  AL++YTSGTTGKPK
Sbjct:   129 APLREGTADTPRLFMTLTPFTQSPSPPQLPEFSPV-----YYPERRALMIYTSGTTGKPK 183

Query:   187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
             G + THK+I  Q Q L +AW+Y   D  +H LPLHH+HG+ N L A L AGATVE  PKF
Sbjct:   184 GAITTHKTITFQAQCLIQAWQYQPTDHLIHVLPLHHIHGIINGLTATLLAGATVEMYPKF 243

Query:   247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA--MDTELQXXXXXXXKQ 304
                 IW RW        N+     T F  VPT+Y+RL+  +EA    TE +         
Sbjct:   244 DPATIWTRWT-------NKGSS--TMFFAVPTIYSRLVDYFEAHIRGTEQETPAREGAAA 294

Query:   305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKA-GTVGNPLPG 363
             LRL++ GS+ALP P+  ++ TIT   LLERYGMTE  M +S  L  A++  G+VG PLPG
Sbjct:   295 LRLLVSGSAALPTPIKTKFATITNQTLLERYGMTEIGMGLSCGLDVAQRIDGSVGWPLPG 354

Query:   364 VQVKIAEDESGS--DAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQD 420
             VQV++ + E+G+  +AA V G I VK  ++F EYW+ P+ T   FTADG+FKTGD  ++D
Sbjct:   355 VQVRLTDKETGAVIEAADVDGMIEVKGDNVFSEYWRRPEATAKEFTADGWFKTGDVARRD 414

Query:   421 EDGYYIILGRKGI 433
             E G Y I GR  +
Sbjct:   415 ERGAYYIQGRASV 427

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

RGD|1586037 Acsf3 "acyl-CoA synthetase family member 3" [Rattus norvegicus (taxid:10116)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 155/388 (39%), Positives = 229/388 (59%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             R+  +      +V     +W SG +AVPL   +PE++L + + DS  S+V+  ++Y E L
Sbjct:    97 RVSFLCSNDVSYVIAQWASWMSGGVAVPLYRKHPEAQLEYFIQDSRSSVVVVGQEYLERL 156

Query:   130 QNVASKSGAKF-SLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGV 188
               +A + G     L P V + ++E  + +Q   E+    RG   A+I YTSGTTG+PKG 
Sbjct:   157 SPLAQRLGVPLLPLTPAVYHGAAEKPI-EQPIQEREWRDRG---AMIFYTSGTTGRPKGA 212

Query:   189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
             + TH+++ A V  L  +W +T  D  LH LPLHHVHG+ N LL PL+ GAT   +P+FS 
Sbjct:   213 LSTHRNLAAVVTGLVHSWAWTKNDVILHVLPLHHVHGVVNKLLCPLWVGATCVMLPEFSA 272

Query:   249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE--LQXXXXXXXKQ-L 305
             + +W+++  S       A + I  F  VPT+Y++L+  Y+   T+  +Q       K+ +
Sbjct:   273 QQVWEKFLSS------EAPQ-INMFMAVPTIYSKLLDYYDRHFTQSHVQDFVRAVCKERI 325

Query:   306 RLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQ 365
             RLM+ GS+ALP+P++++W++ TGH LLERYGMTE  MA+SNPL  AR  G+VG PLPGV+
Sbjct:   326 RLMVSGSAALPVPLLEKWKSATGHTLLERYGMTEIGMALSNPLTEARVPGSVGTPLPGVE 385

Query:   366 VKIAED--ESGSD----AAG--------------VGEICVKSPSLFKEYWKLPKVTKDSF 405
             V+I  +  + GS     A G               GE+ VK PS+F+EYW  P+ TK +F
Sbjct:   386 VRIVSENPQKGSSYTIHAEGNMRGTKVTPGFEEKEGELLVKGPSVFQEYWDKPEETKSAF 445

Query:   406 TADGFFKTGDTGKQDEDGYYIILGRKGI 433
             T DG+F+TGDT    +D Y+I  GR  +
Sbjct:   446 TPDGWFRTGDTAVFKDDRYWI-RGRTSV 472

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006631 "fatty acid metabolic process" evidence=ISO

GO:0006633 "fatty acid biosynthetic process" evidence=IEA;ISO

GO:0016878 "acid-thiol ligase activity" evidence=ISO

GO:0090409 "malonyl-CoA synthetase activity" evidence=IEA;ISO

GO:0090410 "malonate catabolic process" evidence=IEA;ISO

DICTYBASE|DDB_G0289539 DDB_G0289539 "Acyl-CoA synthetase family member 3, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 151/384 (39%), Positives = 218/384 (56%)

Query:    70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
             R+      +F++V    G W +G  AVPLALS+P  EL + + +S  SM+L+  +    +
Sbjct:    64 RVAYFFGQNFDYVRSQWGIWAAGGTAVPLALSHPIHELQYTIENSKSSMILTNSENYSKM 123

Query:   130 QNVASKSGAKFSLIPPVPNVS---SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
             + + +        IP V   +   S+ +  +  +   +D  R    ALI+YTSGTT KPK
Sbjct:   124 KEIGTNLNIPVIEIPKVGEYTIPKSQWSSMEDYKQYSIDSNRN---ALIIYTSGTTSKPK 180

Query:   187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
             GVV TH +I+AQ+Q L + W++T  D  L  LPLHHVHG+ N +   L++GA  E MPKF
Sbjct:   181 GVVTTHANIEAQIQTLVDYWKWTEKDHILEVLPLHHVHGVINVVSCALWSGAICEMMPKF 240

Query:   247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ--GYEAMDTELQXXXXXXXKQ 304
               + +  R  ES  ++ +   + I+ F  VPT+Y++LI+       D   +       K+
Sbjct:   241 DSKQVVDRLLES-GISTD-LDQPISLFMAVPTIYSKLIKYVNENITDPTERLAIENAFKR 298

Query:   305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPG 363
             LRLM+ GSSALP  V  +++ I+G  LLERYGMTE  MA+SNPL+   R  GTVG PLPG
Sbjct:   299 LRLMVSGSSALPESVRNEFQAISGQVLLERYGMTEIGMALSNPLKVNERIGGTVGFPLPG 358

Query:   364 VQVKIAEDESGSDAAG-------------VGEICVKSPSLFKEYWKLPKVTKDSFTADGF 410
             VQ+KI  + +  D                VGE+ VK P +FKEY++  K T+++FT DG+
Sbjct:   359 VQIKIQPELNNDDNQNNNQNNNDNNNNKEVGELLVKGPQVFKEYFEKRKATEEAFTDDGW 418

Query:   411 FKTGDTGKQD-EDGYYIILGRKGI 433
             FKTGD  ++D   G   ILGR  +
Sbjct:   419 FKTGDIVEKDLSTGRLKILGRSSV 442

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

TIGR_CMR|SPO_A0282 SPO_A0282 "long-chain-fatty-acid--CoA ligase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 345 (126.5 bits), Expect = 3.6e-54, Sum P(2) = 3.6e-54
 Identities = 77/162 (47%), Positives = 100/162 (61%)

Query:   271 TAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHR 330
             T+  GVPT YTRL+ G      EL        + +RL + GS+ L      ++E  TGHR
Sbjct:   244 TSMMGVPTFYTRLL-GDARFTREL-------AQHMRLFVSGSAPLLAETHVEFEERTGHR 295

Query:   331 LLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA-G-VGEICVKSP 388
             +LERYGMTE  M  SNP  GAR+AGTVG PLPGV++K+ + E+G     G +G I V+ P
Sbjct:   296 ILERYGMTETNMNTSNPYEGARRAGTVGLPLPGVELKVTDPETGETLPQGEIGVIEVRGP 355

Query:   389 SLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
             ++FK YW++P+ T     ADGFF TGD G  DE GY  I+GR
Sbjct:   356 NVFKGYWQMPEKTAAELRADGFFITGDLGFVDEQGYVTIVGR 397

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H151	AAE13_ARATH	6, ., 2, ., 1, ., n, 3	0.7188	0.9793	0.7830	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	435
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-165
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	1e-90
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	8e-90
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	1e-85
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	3e-84
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	6e-78
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	3e-74
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	2e-69
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	3e-69
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	2e-66
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-65
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	6e-60
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-57
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	3e-56
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	3e-56
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	2e-53
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	1e-52
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-50
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-48
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	3e-48
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	3e-48
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	6e-48
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	4e-47
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	5e-47
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	3e-46
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	8e-46
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	1e-44
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	2e-44
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	5e-44
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	6e-44
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	8e-44
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	3e-42
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	4e-41
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	8e-41
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-40
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	2e-40
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-40
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	6e-40
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	8e-39
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	1e-38
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	3e-38
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	5e-38
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	7e-38
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-37
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	2e-34
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	2e-34
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	3e-34
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	7e-34
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	9e-34
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	3e-33
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	8e-33
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	1e-32
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-31
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	1e-31
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	5e-31
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	6e-31
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	6e-31
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	5e-30
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	8e-30
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	2e-29
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	3e-29
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	1e-28
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	2e-28
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-28
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	2e-28
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	5e-28
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	7e-28
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	2e-27
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	4e-27
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	4e-27
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	1e-26
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	1e-26
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	3e-26
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-25
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	2e-25
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-25
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	3e-25
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	3e-25
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	3e-25
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	3e-25
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	5e-25
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	1e-24
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	2e-24
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	2e-24
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	3e-24
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	4e-24
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	4e-24
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	5e-24
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	5e-24
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-24
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	6e-24
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	9e-23
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	1e-22
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	4e-22
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	7e-22
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	2e-21
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	2e-21
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	3e-21
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	3e-21
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	6e-21
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	8e-21
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-20
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	4e-20
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	7e-20
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-19
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-19
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	4e-19
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	4e-19
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	4e-18
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	4e-18
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	9e-18
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-16
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	5e-16
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	5e-16
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	7e-16
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	8e-16
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	1e-15
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-15
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	2e-15
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	4e-15
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	4e-15
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	5e-15
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	9e-15
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	9e-15
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	1e-14
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	4e-14
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	5e-14
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	6e-14
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	8e-14
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	1e-13
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	1e-13
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	2e-13
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	2e-13
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	2e-13
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	6e-13
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	8e-13
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	1e-12
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	2e-12
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	4e-12
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	6e-12
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	7e-12
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	1e-11
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	1e-11
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	1e-11
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	2e-11
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	4e-10
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	5e-10
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	1e-09
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	2e-09
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	3e-09
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	3e-09
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	3e-09
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	4e-09
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	5e-09
cd05905	556	cd05905, Dip2, Disco-interacting protein 2 (Dip2)	6e-09
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	6e-09
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	8e-09
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	8e-09
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	9e-09
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	9e-09
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-08
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	1e-08
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	2e-08
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	4e-08
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	7e-08
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	1e-07
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	2e-07
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	9e-07
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	1e-06
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	2e-06
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	6e-06
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	6e-06
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	8e-06
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	4e-05
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	7e-05
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	8e-05
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.001
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	0.002
TIGR02372	386	TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase	0.003

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  470 bits (1213), Expect = e-165
 Identities = 177/418 (42%), Positives = 240/418 (57%), Gaps = 84/418 (20%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D +A+    +S +Y +L + + R++  L +  L                   G R+ ++A
Sbjct: 1   DRIALVDGGRSLTYGELDARSGRLAKALLALGLLP-----------------GDRVAVLA 43

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S E+V   L  W +G +AVPL  SYP +EL +++ DS  S+++               
Sbjct: 44  PKSAEYVVLYLAIWRAGGVAVPLNPSYPAAELAYILSDSQPSLLV--------------- 88

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                                              DPALI+YTSGTTG+PKGVV TH ++
Sbjct: 89  -----------------------------------DPALIIYTSGTTGRPKGVVLTHGNL 113

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRW 255
            A  + L EAW +T++D  LH LPLHHVHGLFNAL  PL+AGA+VEF+P+F  +      
Sbjct: 114 AANARALVEAWRWTASDVLLHALPLHHVHGLFNALHCPLWAGASVEFLPRFDPQ------ 167

Query: 256 RESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315
                 +  R    IT F GVPT+YTRL++ YE  D     A+A+AA+ LRL + GS+AL
Sbjct: 168 ----ERDALRLLPRITVFMGVPTIYTRLLEHYEFDD-----AAAAAARNLRLFVSGSAAL 218

Query: 316 PLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGS 375
           P+PV+++WE  TGH LLERYGMTE  MA+SNPL G R+ GTVG PLPGV+V+I +++ G 
Sbjct: 219 PVPVLERWEERTGHTLLERYGMTETGMALSNPLDGERRPGTVGLPLPGVEVRIVDEDGGE 278

Query: 376 --DAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
              A  VGEI V+ P++F EYW  P+ T ++FT DG+FKTGD G  DEDGYY ILGRK
Sbjct: 279 PLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVVDEDGYYRILGRK 336

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  282 bits (725), Expect = 1e-90
 Identities = 144/434 (33%), Positives = 225/434 (51%), Gaps = 51/434 (11%)

Query: 6   AAYKKGSMARDSVAIRA-DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLA 64
            A +     RD+  I   D   Y+Y  L +++ R+++LL +  +K               
Sbjct: 7   DALRAAFADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKP-------------- 52

Query: 65  GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124
              G R+ +  + S E +A  L T  +G + +PL  +Y  +EL + + D++ ++V+    
Sbjct: 53  ---GDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPA 109

Query: 125 YREVLQNVASKSGAK--FSLIPPVPNVSSETTVFDQSQAEKMDGQ----RGEDPALIVYT 178
               L  +A+ +GA    +L     +     ++ + + A   D +      +D A I+YT
Sbjct: 110 NFAWLSKIAAAAGAPHVETL-----DADGTGSLLEAAAAAPDDFETVPRGADDLAAILYT 164

Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           SGTTG+ KG + +H ++ +    L + W +T  D  +H LP+ H HGLF A    L AGA
Sbjct: 165 SGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGA 224

Query: 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS 298
           ++ F+PKF    +      +            T   GVPT YTRL+Q     +  L   +
Sbjct: 225 SMIFLPKFDPDAVLALMPRA------------TVMMGVPTFYTRLLQ-----EPRL---T 264

Query: 299 ASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVG 358
             AA  +RL + GS+ L     ++++  TGH +LERYGMTE  M  SNP  G R+AGTVG
Sbjct: 265 REAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVG 324

Query: 359 NPLPGVQVKIAEDESGSD--AAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDT 416
            PLPGV +++ + E+G++     +G I VK P++FK YW++P+ T + F ADGFF TGD 
Sbjct: 325 FPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDL 384

Query: 417 GKQDEDGYYIILGR 430
           GK DE GY  I+GR
Sbjct: 385 GKIDERGYVHIVGR 398

Length = 504

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  282 bits (722), Expect = 8e-90
 Identities = 128/432 (29%), Positives = 200/432 (46%), Gaps = 50/432 (11%)

Query: 16  DSVAIRADQKS--YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
           D  A+    +    +Y +L   A R+++ L +  +K                  G R+ I
Sbjct: 26  DRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKP-----------------GDRVAI 68

Query: 74  VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
           +   S EF+   L    +G +AVPL       EL ++++D+   +++++ ++  +L+ VA
Sbjct: 69  LLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVA 128

Query: 134 SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD------GQRGEDPALIVYTSGTTGKPKG 187
                   ++             +   AE             +D A ++YTSGTTG PKG
Sbjct: 129 EALPVVLVVLLVGDADDRLPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKG 188

Query: 188 VVHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP- 244
           VV TH+++ A    +  A     T  D  L  LPL H+ GL   LLAPL  G T+  +  
Sbjct: 189 VVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSP 248

Query: 245 -KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK 303
             F    +     E Y V         T  +GVPT    L+          +      + 
Sbjct: 249 EPFDPEEVLW-LIEKYKV---------TVLSGVPTFLRELLD-------NPEKDDDDLSS 291

Query: 304 QLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTE--FVMAISNPLRGARKAGTVGNP 360
            LRL++ G + LP  +++++E   G   +LE YG+TE   V+ I+ P     K G+VG P
Sbjct: 292 SLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRP 351

Query: 361 LPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQ 419
           LPGV+V+I + + G    G VGEI V+ P++ K YW  P+ T ++F  DG+ +TGD G  
Sbjct: 352 LPGVEVRIVDPDGGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYV 411

Query: 420 DEDGYYIILGRK 431
           DEDGY  I+GR 
Sbjct: 412 DEDGYLYIVGRL 423

Length = 534

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  269 bits (689), Expect = 1e-85
 Identities = 127/423 (30%), Positives = 190/423 (44%), Gaps = 72/423 (17%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+    +  +Y +L   + R ++ L    +K                  G R+ ++ 
Sbjct: 14  DRPALTFFGRKLTYAELDELSDRFAAYLQQLGVK-----------------KGDRVALML 56

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
               +F     G   +G + VP+   Y   EL H ++DS   +++    + + L      
Sbjct: 57  PNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISFEDAL-----A 111

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
           SGA   L   +                       +D A++ YT GTTG PKG + TH+++
Sbjct: 112 SGAPLPLPVELS---------------------PDDLAVLQYTGGTTGVPKGAMLTHRNL 150

Query: 196 DAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI-- 251
            A VQ +           D+FL  LPL H+ GL   +L  L  GAT   +P F    +  
Sbjct: 151 VANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLK 210

Query: 252 -WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310
             +R+R              T F GVPT+Y  L+   E    +           LRL + 
Sbjct: 211 EIKRYR-------------FTIFPGVPTLYNALLNHPEFKKYDF--------SSLRLCIS 249

Query: 311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVKIA 369
           G + LP+ V +++E  TG  L+E YG+TE     + NPL G RK G++G PLPG +VKI 
Sbjct: 250 GGAPLPVEVAERFEEKTGAPLVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGTEVKIV 309

Query: 370 EDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIIL 428
           +DE      G VGE+ V+ P + K YW  P+ T +  T DG+ +TGD G  DEDGY+ I+
Sbjct: 310 DDEGNELPPGEVGELVVRGPQVMKGYWNRPEETAEVLT-DGWLRTGDIGYMDEDGYFYIV 368

Query: 429 GRK 431
            RK
Sbjct: 369 DRK 371

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  263 bits (675), Expect = 3e-84
 Identities = 123/416 (29%), Positives = 189/416 (45%), Gaps = 47/416 (11%)

Query: 28  SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLG 87
           +Y +L   A R+++ L +  +                   G R+ I+   S E+V  +L 
Sbjct: 1   TYRELDERANRLAAALRALGVGP-----------------GDRVAILLPNSPEWVVAILA 43

Query: 88  TWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVP 147
              +G   VPL  S P   L +++ DS+  ++++ ++    L  V  K     +LI    
Sbjct: 44  VLKAGAAYVPLDPSLPAERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGD 103

Query: 148 NVSSETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML 202
           +      + D      S          +D A I+YTSGTTGKPKGV+ TH+++ A    L
Sbjct: 104 DGEGLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGL 163

Query: 203 TEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR-GIWQRWRESYPV 261
            E +  T  D+ L  LPLH   G    +  PL AG T+  +PKF++         E Y V
Sbjct: 164 AERFGLTPGDRVLLLLPLHF-DGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKV 222

Query: 262 NGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQ 321
                    T   GVPT+   L+        +           LRL++ G   LP  +++
Sbjct: 223 ---------TVLYGVPTLLRLLL--------KAPEEKKYDLSSLRLVLSGGEPLPPELLR 265

Query: 322 QWETITGH-RLLERYGMTE--FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA 378
           +     G   L+  YG TE   V   + P     K G++G PLPGV+VK+ ++E      
Sbjct: 266 RLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRPLPGVEVKVLDEEGEPVPP 325

Query: 379 GV-GEICVKSPSLFKEYWKLPKVTKDSFTADGFF--KTGDTGKQDEDGYYIILGRK 431
           G  GE+C++ P + + Y   P++T + F  DG+   +TGD G+ DEDGY  ILGRK
Sbjct: 326 GEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDLGRWDEDGYLEILGRK 381

Length = 412

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  249 bits (638), Expect = 6e-78
 Identities = 140/426 (32%), Positives = 205/426 (48%), Gaps = 68/426 (15%)

Query: 11  GSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA- 69
            + A  + A+R   +  S   LA +A                       +AV     GA 
Sbjct: 10  AAAADIADAVRIGGRVLSRSDLAGAA-----------------------TAVAERVAGAR 46

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL-STEDYREV 128
           R+ ++A P+   V  V+G   +G   VP+      +E  H++ DS     L    D    
Sbjct: 47  RVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAWLGPAPDDPAG 106

Query: 129 LQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGV 188
           L +V  +  A+     P P+  +                    PALIVYTSGTTG PKGV
Sbjct: 107 LPHVPVRLHARSWHRYPEPDPDA--------------------PALIVYTSGTTGPPKGV 146

Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
           V + ++I A +  L EAW++T+ D  +H LPL HVHGL   +L PL  G       + + 
Sbjct: 147 VLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTP 206

Query: 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308
                   E+Y    +  G   T + GVPT+++R+     A D E   A   A    RL+
Sbjct: 207 --------EAYAQALSEGG---TLYFGVPTVWSRI-----AADPEAARALRGA----RLL 246

Query: 309 MCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKI 368
           + GS+ALP+PV  +   +TGHR +ERYGMTE ++ +S    G R+ G VG PL GV+ ++
Sbjct: 247 VSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGVETRL 306

Query: 369 AEDESG---SDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYY 425
            +++ G    D   VGE+ V+ P+LF  Y   P  T  +FTADG+F+TGD    D DG +
Sbjct: 307 VDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMH 366

Query: 426 IILGRK 431
            I+GR+
Sbjct: 367 RIVGRE 372

Length = 471

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  235 bits (601), Expect = 3e-74
 Identities = 103/263 (39%), Positives = 141/263 (53%), Gaps = 19/263 (7%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230
           DPA I+YTSGTTGKPKGVV +H+++ A  Q L +A   T  D  L  LPL HV G  + L
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60

Query: 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
           L  L AG TV     F     +    E Y          +T   GVPT+Y  L +  E  
Sbjct: 61  LGALLAGGTVVLYEGFPFPLSFLELIEQY---------RVTVLFGVPTLYDALAKAAEDR 111

Query: 291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS-NPLR 349
             +L  +S      LRL++ G   L   +++++E   G  +LE YG+TE  +  S NP  
Sbjct: 112 GYDL--SS------LRLLISGGEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDS 163

Query: 350 GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTAD 408
             +K GTVG P+PGV+V++ ++E      G VGE+ V+ P + K YW  P  T  + T D
Sbjct: 164 ELKKPGTVGRPVPGVEVRVVDEEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATED 223

Query: 409 GFFKTGDTGKQDEDGYYIILGRK 431
           G+++TGD G  DE+GY  I GR 
Sbjct: 224 GWYRTGDLGYLDEEGYLYITGRS 246

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  226 bits (578), Expect = 2e-69
 Identities = 117/418 (27%), Positives = 185/418 (44%), Gaps = 99/418 (23%)

Query: 25  KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
           ++ ++ +LA    R+++ L                   L    G R+ I+A+   E+V  
Sbjct: 4   QTITWAELAERVRRLAAGL-----------------IALGVKPGDRVAILAENRPEWVIA 46

Query: 85  VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIP 144
            L    +G + VP+  +    E+ ++++DS   +V   ED                    
Sbjct: 47  DLAILAAGAVPVPIYPTSSPEEVAYILNDSGARVVF-VED-------------------- 85

Query: 145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE 204
                                  + +D A ++YTSGTTG PKGV+ TH+++ AQ   L E
Sbjct: 86  -----------------------KPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLE 122

Query: 205 AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGN 264
               +  D+ L  LPL HV         PL +GA V F    S   + +  RE       
Sbjct: 123 VIPLSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAE--SPETLLEDLRE------- 173

Query: 265 RAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK---------QLRLMMCGSSAL 315
                 T F  VP ++ ++   Y  ++ ++ AA     K         +LR  + G + L
Sbjct: 174 ---VRPTVFFAVPRVWEKI---YAGIEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPL 227

Query: 316 PLPVMQQWETITGHRLLERYGMTEF--VMAISNPLRGARKAGTVGNPLPGVQVKIAEDES 373
           P  V++ +  + G  +LE YG+TE   V  ++ P  G  + GTVG PLPGV+V+IAED  
Sbjct: 228 PPEVLEFFRAL-GIPILEGYGLTETSGVATVNRP--GDIRIGTVGKPLPGVEVRIAED-- 282

Query: 374 GSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
                  GEI V+ P++ K Y+K P+ T ++   DG+  TGD G+ DEDG+ +I  RK
Sbjct: 283 -------GEILVRGPNVMKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRK 333

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  222 bits (569), Expect = 3e-69
 Identities = 95/269 (35%), Positives = 139/269 (51%), Gaps = 31/269 (11%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +DPALI+YTSGTTG+PKGV+ TH+++ A         + +  D +L   PL+H       
Sbjct: 1   DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHA-AGGLF 59

Query: 230 LLAPLYAGATVEFMPKFSVRGIW---QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
           LL  L AG TV  MPKF    +    +R R             +T    VPTM+ RL++ 
Sbjct: 60  LLPALAAGGTVVLMPKFDPEAVLDLIERHR-------------VTHTFLVPTMFQRLLRL 106

Query: 287 YEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE--FVMAI 344
            +    +L +        LRL++ G++ +P  + +      G   ++ YGMTE      +
Sbjct: 107 PDFARYDLSS--------LRLIIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTTL 158

Query: 345 SNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKVTK 402
            +P    RK G+VG P+PGV+V+I  DE G +     VGEI V+ P++   YW  P+ T 
Sbjct: 159 LSPEDWLRKLGSVGRPVPGVEVRIV-DEDGRELPPGEVGEIVVRGPAVMAGYWNRPEATA 217

Query: 403 DSFTADGFFKTGDTGKQDEDGYYIILGRK 431
           ++   DG+  TGD G  DEDGY  I+ RK
Sbjct: 218 EAL-RDGWLHTGDLGYLDEDGYLYIVDRK 245

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  215 bits (550), Expect = 2e-66
 Identities = 97/269 (36%), Positives = 133/269 (49%), Gaps = 27/269 (10%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +DPALI YTSGTTG+PKG + TH+++      +      T  D+ L  +PL HV GL   
Sbjct: 2   DDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVLG 61

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
           +LA L AGAT+  M KF      +              E ITA  GVPTM+  L+     
Sbjct: 62  VLASLTAGATLVLMEKFDPGAALRLIER----------ERITALHGVPTMFIALL----- 106

Query: 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTE-----FVMA 343
              E           LR  + G + +P  ++++         +   YGMTE        +
Sbjct: 107 ---EHPDFDKFDLSSLRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTS 163

Query: 344 ISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTK 402
             +P     + GTVG PLPGV+VKI + + G    G VGEICV+  S+ K Y+  P+ T 
Sbjct: 164 GDDPY--EDRPGTVGRPLPGVEVKIVDPDGGEVPPGEVGEICVRGYSVMKGYYNDPEATA 221

Query: 403 DSFTADGFFKTGDTGKQDEDGYYIILGRK 431
           ++  ADG+  TGD G  DEDGY  I+GR 
Sbjct: 222 EAIDADGWLHTGDLGYMDEDGYLRIVGRI 250

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  220 bits (563), Expect = 1e-65
 Identities = 118/459 (25%), Positives = 187/459 (40%), Gaps = 87/459 (18%)

Query: 27  YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
            +Y +L      ++S L S  +                   G R+ I A    E+    L
Sbjct: 46  ITYRELYERVRALASGLLSLGIPA-----------------GDRVAIFAANRPEWAIADL 88

Query: 87  GTWFSGCIAVPLALSYPESELLHVMHDSDISMVL-STEDYREVLQNVASKSGAKFSLIPP 145
                G ++VP+  +    +L +++++S+  ++    ++  +++  V         LI  
Sbjct: 89  AILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVI 148

Query: 146 V-----------------PNVSSETTVFDQSQAEKMDGQR-GEDPALIVYTSGTTGKPKG 187
           +                 P+      + D +  E        +D A I+YTSGTTG PKG
Sbjct: 149 IDLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKG 208

Query: 188 VVHTHKSIDAQVQMLTEAWEY----TSADQFLHCLPLHHVHGLFNALLAPLYAGATV--- 240
           V+ TH+++ AQV       E        D+ L  LPL H+          LY G TV   
Sbjct: 209 VMLTHRNLLAQV---AGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK 265

Query: 241 -----------EFMPKF--SVRGIWQRWRE-------SYPVNGNRAGEAITAFTGVPTMY 280
                      E  P     V  +W++  +         P    +      A        
Sbjct: 266 EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFR--WALKVAYKKI 323

Query: 281 TRLIQGYEAMDTELQA-------ASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLE 333
           +R + G   +   L A          +   ++R  + G + L  P +  +    G  +LE
Sbjct: 324 SRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLS-PELLHFFRSLGIPILE 382

Query: 334 RYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFK 392
            YG+TE    +S NP       GTVG PLPG++VKIA+D         GEI V+ P++ K
Sbjct: 383 GYGLTETSAVVSVNPPDR-FVLGTVGKPLPGIEVKIADD---------GEILVRGPNVMK 432

Query: 393 EYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
            Y+K P+ T ++FT DG+F+TGD G+ DEDGY +I GRK
Sbjct: 433 GYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRK 471

Length = 613

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  198 bits (506), Expect = 6e-60
 Identities = 98/264 (37%), Positives = 145/264 (54%), Gaps = 22/264 (8%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +DPALI++TSGTTG+PKGV  THK++ A  + + ++ + T +D+ L+ +PL H+HGL  +
Sbjct: 2   DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIVS 61

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
           LLA L AG +V   PKFS    W    +             T ++ VPT++  L++  + 
Sbjct: 62  LLATLLAGGSVVCPPKFSASKFWDDIAKYRV----------TWYSAVPTIHQILLKTAK- 110

Query: 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAI-SNPL 348
                         +LR +   S+ LP  V+ + E   G  +LE YGMTE    I SNPL
Sbjct: 111 ------PNPGKPPPRLRFIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPL 164

Query: 349 RGA-RKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFT 406
               RK G+VG P  GV+V I +D+      G  GEI ++ P++   Y   P+  +++F 
Sbjct: 165 PPLVRKPGSVGRPA-GVEVAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFR 223

Query: 407 ADGFFKTGDTGKQDEDGYYIILGR 430
            DG+F+TGD G  DEDGY  + GR
Sbjct: 224 -DGWFRTGDLGYLDEDGYLFLTGR 246

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  196 bits (501), Expect = 1e-57
 Identities = 121/443 (27%), Positives = 183/443 (41%), Gaps = 78/443 (17%)

Query: 18  VAIRAD-QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76
             I AD     ++  L   ALR++  L    LK                  G  + +++ 
Sbjct: 1   ALIDADTGTELTFADLLKKALRLAKGLRKLGLKQ-----------------GDVVALISP 43

Query: 77  PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKS 136
            S EF    LG   +G I      SY   EL H +  S   ++    D  + ++  A + 
Sbjct: 44  NSIEFPPVFLGCLAAGGIVSAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKEL 103

Query: 137 GAKFSLI---------PPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
           G    +I           + ++       +            +D A ++Y+SGTTG PKG
Sbjct: 104 GPVVRIIVLDSAPDGVLRIEDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKG 163

Query: 188 VVHTHKSIDA---QVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244
           V+ +HK+I A   QVQ   +    +S D  L  LP +H +GL   L + L  GATV  MP
Sbjct: 164 VMLSHKNIIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLC-GATVIIMP 222

Query: 245 KFSV----RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS 300
           KF      + I ++++             +T+   VP +   L     A    +     S
Sbjct: 223 KFDSETFLKLI-EKYK-------------VTSLFLVPPIAVAL-----AKSPLVDKYDLS 263

Query: 301 AAKQLRLMMCGSSALPLPVMQQWETITGHRLLER---------YGMTEFVMAISNPLRGA 351
           +   LR++  G++ L   +           L +R         YGMTE   A +    G 
Sbjct: 264 S---LRVIFSGAAPLSKEL--------QEELRKRFPNTTIKQGYGMTETGPATTLTPPGD 312

Query: 352 RKAGTVGNPLPGVQVKIAEDESGSDAAG---VGEICVKSPSLFKEYWKLPKVTKDSFTAD 408
            K G+VG  +P V+ KI  DE G  + G    GE+CVK P + K Y   P+ TK++   D
Sbjct: 313 EKPGSVGRLVPNVEAKI-VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDED 371

Query: 409 GFFKTGDTGKQDEDGYYIILGRK 431
           G+  TGD G  DEDG + I+ RK
Sbjct: 372 GWLHTGDIGYFDEDGNFYIVDRK 394

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  193 bits (493), Expect = 3e-56
 Identities = 119/443 (26%), Positives = 189/443 (42%), Gaps = 53/443 (11%)

Query: 3   VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAV 62
           + +AA + G    D  A     +  +Y +L +   R ++ L                 A 
Sbjct: 11  LARAARRFG----DKEAYVFGDQRLTYAELNARVRRAAAAL-----------------AA 49

Query: 63  LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122
           L  G G R+ I A  S  +V   LG   +G + VPL   Y   E  +++   D   +   
Sbjct: 50  LGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVL 109

Query: 123 ED----YREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQ-----SQAEKMDGQRGEDPA 173
                        + +               + +   F         AE+      +D A
Sbjct: 110 GLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAERAPEVDPDDVA 169

Query: 174 LIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP 233
            I++TSGTTG+PKG + TH+ + +      E    T  D++L   P  HV G    + AP
Sbjct: 170 DILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAP 229

Query: 234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE 293
           L  GAT+  +P F    +++              E IT   G PTMY  L+Q        
Sbjct: 230 LMRGATILPLPVFDPDEVFRLIET----------ERITVLPGPPTMYNSLLQ-------- 271

Query: 294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEFV-MAISNPLRGA 351
               SA     LRL + G++++P+ +++++E+  G   +L  YG++E   +   N L   
Sbjct: 272 HPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDD 331

Query: 352 RK--AGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTAD 408
           RK  AGT+G  + GV+ KI  +       G VGE+ V+ P++ K Y+  P+ T  +  AD
Sbjct: 332 RKTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDAD 391

Query: 409 GFFKTGDTGKQDEDGYYIILGRK 431
           G+  TGD G+ DE+GY  I+ RK
Sbjct: 392 GWLHTGDLGRLDEEGYLYIVDRK 414

Length = 513

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  193 bits (493), Expect = 3e-56
 Identities = 106/442 (23%), Positives = 184/442 (41%), Gaps = 71/442 (16%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+  D +  +Y +L     R+++ L +  +K                  G R+ +  
Sbjct: 21  DKEAVYFDGRRTTYAELDERVNRLANALRALGVKK-----------------GDRVAVFD 63

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S E++         G +  P+ +     E+ ++++D++  +VL   ++  +L  +  +
Sbjct: 64  WNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQ 123

Query: 136 SGAKFSLIPPVPNV-------SSETTVFDQSQAEKMDGQRGEDP---------ALIVYTS 179
                  +P V  V       ++          E +                 A ++YTS
Sbjct: 124 -------LPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASDTFDFPDIDENDAAAMLYTS 176

Query: 180 GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239
           GTTG PKGVV +H+++      +    + +  D +L  +P+ HVH         L AGA 
Sbjct: 177 GTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAW-GLPYLALMAGAK 235

Query: 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299
                +F    +                E +T F  VPT++  L++   A   +  +   
Sbjct: 236 QVIPRRFDPENLLDLIET----------ERVTFFFAVPTIWQMLLKAPRAYFVDFSS--- 282

Query: 300 SAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF--VMAISNP----LRGARK 353
                LRL++ G +ALP  ++++++   G  L++ YGMTE   V+++  P         K
Sbjct: 283 -----LRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTK 337

Query: 354 AGTVGNPLPGVQVKIAEDESG----SDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADG 409
             + G PLPGV+ +I  D+ G     D   VGEI V+ P L + YW  P+ T ++    G
Sbjct: 338 RRSAGRPLPGVEARIV-DDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI-DGG 395

Query: 410 FFKTGDTGKQDEDGYYIILGRK 431
           +  TGD G  DEDGY  I  R 
Sbjct: 396 WLHTGDVGYIDEDGYLYITDRI 417

Length = 521

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  183 bits (467), Expect = 2e-53
 Identities = 106/376 (28%), Positives = 161/376 (42%), Gaps = 83/376 (22%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ +  + S +FV        +G + VP+     E+EL H+++DS   +++       
Sbjct: 26  GDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNREAELEHILNDSGARVLIV------ 79

Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
                                                 G   +D A+I YTSGTTG PKG
Sbjct: 80  --------------------------------------GSELDDVAVIPYTSGTTGLPKG 101

Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
            +HTH+++ A           T     L  LPL HV G+  ++ AP+Y GAT+  +    
Sbjct: 102 CMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHVAGMQGSMNAPIYTGATLVLLT--- 158

Query: 248 VRGIWQRW-RESYPVNGNRAGEAI-----TAFTGVPTMYTRLIQGYEAMDTELQAASASA 301
                 RW RE+       A  AI     T +T + TM   L+      D +L +     
Sbjct: 159 ------RWDREA-------AARAIERYRVTHWTNIVTMVVDLLAHPRFADYDLSS----- 200

Query: 302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA--ISNPLRGARKAGTVGN 359
              L+++  G +ALP  V ++ + +TG    E YG+TE       + P R   K   +G 
Sbjct: 201 ---LKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRP--KPQCLGI 255

Query: 360 PLPGVQVKIAEDESGS--DAAGVGEICVKSPSLFKEYWKLPKVTKDSF---TADGFFKTG 414
           P+ G   ++ + E+G        GEI V+ P +FK YW  P+ T +SF       FF+TG
Sbjct: 256 PVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTG 315

Query: 415 DTGKQDEDGYYIILGR 430
           D G  DE+GY+  L R
Sbjct: 316 DLGYIDEEGYFFFLDR 331

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  183 bits (467), Expect = 1e-52
 Identities = 130/448 (29%), Positives = 195/448 (43%), Gaps = 86/448 (19%)

Query: 25  KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
             Y++ Q+A  A RI++ L S  L+                  G RI I++K   E++  
Sbjct: 5   HEYTWAQVADQARRIAAALQSLGLEP-----------------GDRIAILSKNCAEWIIA 47

Query: 85  VLGTWFSGCIAVPLALSYP---ESELLHVMHDSDISMVL--STEDYREVLQNVASKSGAK 139
            L  W +G ++VPL   YP      + +V+  SD   +     +D+  +   V       
Sbjct: 48  DLAIWMAGHVSVPL---YPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPE----- 99

Query: 140 FSLIPPVPNVSSETTVFDQSQA-----EKMDG---QRGEDPALIVYTSGTTGKPKGVVHT 191
             L   +    S      +        E + G      ED A IVYTSGTTG+PKGV+ +
Sbjct: 100 -GLPTIILFPYSTLKDHYKWDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLS 158

Query: 192 HKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI 251
             +     Q   E    T  D+ L  LPL H+          LY+GA V F     V  +
Sbjct: 159 FGAFAFAAQGTIEIIGLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFF-----VESL 213

Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY------EAMDTELQAASASAA--- 302
                +++  +  RA    T F  VP ++T+  QG       E ++  L+    S+    
Sbjct: 214 -----DTFAADLQRA--RPTVFFSVPRLWTKFQQGILAKLPPEKLNLLLKIPILSSLVKK 266

Query: 303 --------KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKA 354
                    Q RL   G++ +P  ++  +  + G  + E YGMTE     +    G R+ 
Sbjct: 267 KILKGLGLDQARLAGSGAAPMPPALIAWYRKL-GLPICEGYGMTENFAYSTLNYPGDRRI 325

Query: 355 GTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTG 414
           GTVG P+PGV++KI+ED         GEI ++SP L   Y+K P+ T ++FT DG+  TG
Sbjct: 326 GTVGKPIPGVELKISED---------GEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTG 376

Query: 415 DTGKQDEDGYYIILGR--------KGIY 434
           D G+ DEDG+  I GR        KG Y
Sbjct: 377 DKGEIDEDGFLKITGRVKELFKTSKGKY 404

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  175 bits (447), Expect = 2e-50
 Identities = 97/370 (26%), Positives = 152/370 (41%), Gaps = 77/370 (20%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ ++     EF+         G +AVP+  +    EL H++  S   +++       
Sbjct: 28  GDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRGEELAHILDHSGARLIVV------ 81

Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
                                                      D A I+YTSGTTG PKG
Sbjct: 82  -------------------------------------------DTAAILYTSGTTGPPKG 98

Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
           V+ TH  +    ++          D  L  LPL H++    ++ A L  GAT+  +P+FS
Sbjct: 99  VLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHINAQAYSVYAALLVGATLVLLPRFS 158

Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
               W + R+        A    T F  +  M   L++   + D             LR 
Sbjct: 159 ASRFWDQVRKH------GA----TVFNLLGAMAAILMKQPPSPD--------DRDHPLRF 200

Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVK 367
           +      LP  +   +E   G +L+E YGMTE  + I  P       G+ G P PGV+V+
Sbjct: 201 VFGA--PLPAAIWPAFEERFGVKLVEGYGMTETGVPIIAP-GDPAPPGSCGRPRPGVEVR 257

Query: 368 IAEDESGSDAA--GVGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDED 422
           I  DE G +     VGE+ V+     ++FK Y+ +P+ T  ++  +G+F TGD G++DED
Sbjct: 258 IV-DEDGREVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKAW-RNGWFHTGDRGRRDED 315

Query: 423 GYYIILGRKG 432
           G+   + RK 
Sbjct: 316 GFLYFVDRKK 325

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  171 bits (435), Expect = 1e-48
 Identities = 89/265 (33%), Positives = 129/265 (48%), Gaps = 24/265 (9%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230
           D AL++YTSGTTG+PKGV+HTH ++ A+V+   E    T  D  L   PL H+ G    L
Sbjct: 94  DVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMPSPLAHITGFLYGL 153

Query: 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
             PL  GATV    ++      +  RE            +T   G       L+      
Sbjct: 154 ELPLLLGATVVLQDRWDPARALELIRE----------HGVTFTMGATPFLADLL------ 197

Query: 291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR- 349
                 A+      LR+ +CG + +P  + ++     G +++  YGMTE  +        
Sbjct: 198 --AAADAAGPDLPSLRVFLCGGAPVPRELARRAAEALGAKVVRAYGMTEVPLVTVGTPDD 255

Query: 350 -GARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKVTKDSFT 406
              ++A T G P+PGV+V+I  D+ G+D      GE+ V+ P LF  Y   P  T ++FT
Sbjct: 256 PDDKRAATDGRPVPGVEVRIV-DDDGNDVPPGEEGELQVRGPQLFLGYLDPPDNT-EAFT 313

Query: 407 ADGFFKTGDTGKQDEDGYYIILGRK 431
            DG+F+TGD G+ D DGY  I GRK
Sbjct: 314 DDGWFRTGDLGRLDADGYLRITGRK 338

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  169 bits (431), Expect = 3e-48
 Identities = 99/403 (24%), Positives = 159/403 (39%), Gaps = 58/403 (14%)

Query: 57  NENSAVLA------GGCGA--RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELL 108
           +E +  LA      GG G   R+ ++ + S E V  +L    +G   VPL  +YP   L 
Sbjct: 6   DERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLA 65

Query: 109 HVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKM--DG 166
            ++ D+   ++L+       L  +          +P +     E    D + A       
Sbjct: 66  FILEDAGARLLLTDSALASRLAGLV---------LPVILLDPLELAALDDAPAPPPPDAP 116

Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
              +D A ++YTSG+TG+PKGVV TH+S+   +  L   +     D+ L    L     +
Sbjct: 117 SGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASV 176

Query: 227 FNALLAPLYAGATVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL 283
              +   L AGAT+   P+        +       +PV         T     P++   L
Sbjct: 177 E-EIFGALLAGATLVVPPEDEERDDAALLAALIAEHPV---------TVLNLTPSLLALL 226

Query: 284 IQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTE--- 339
                       AA   A   LRL++ G  AL   ++ +W     G RL+  YG TE   
Sbjct: 227 A-----------AALPPALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTV 275

Query: 340 FVMAISNPLRGARKAGTV--GNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWK 396
           +  A       A +   V  G PL   ++ + +D+      GV GE+ +  P + + Y  
Sbjct: 276 WSTATLVDPDDAPRESPVPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYLN 335

Query: 397 LPKVTKDSFTADGF--------FKTGDTGKQDEDGYYIILGRK 431
            P++T + F  D F        ++TGD  +   DG    LGR 
Sbjct: 336 RPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRI 378

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  171 bits (435), Expect = 3e-48
 Identities = 108/433 (24%), Positives = 197/433 (45%), Gaps = 59/433 (13%)

Query: 9   KKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCG 68
           K+  +  D +AI  +++  +Y QL     ++++ L   +L                   G
Sbjct: 10  KRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYL-IYELNVKK---------------G 53

Query: 69  ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
            RI I+++ S E++  +       CIAVPL +   E+EL+  + DS  +++   + +   
Sbjct: 54  ERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTF--- 110

Query: 129 LQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGV 188
            QN+A        +   + +++S   + D+     ++        +I YTSGTTGKPKG 
Sbjct: 111 -QNMALSMQKVSYVQRVI-SITSLKEIEDRKIDNFVEKN-ESASFIICYTSGTTGKPKGA 167

Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV----EFMP 244
           V T +++       T A + T  D+ +  LPL H+ G+       L+AG  +    +F P
Sbjct: 168 VLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEP 227

Query: 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ 304
             ++  I +                +T   GVPT++  LI   +   T LQ+        
Sbjct: 228 TKALSMIEK--------------HKVTVVMGVPTIHQALINCSKFETTNLQS-------- 265

Query: 305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-----FVMAISNPLRGARKAGTVGN 359
           +R    G +  P  +M+++    G    + +GMTE     F+++  +     RK G++G 
Sbjct: 266 VRWFYNGGAPCPEELMREFID-RGFLFGQGFGMTETSPTVFMLSEED---ARRKVGSIGK 321

Query: 360 PLPGVQVKIAEDESGS-DAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGK 418
           P+     ++ ++     +   VGE+ ++ P++ KEYW  P  T+++   DG+  TGD  +
Sbjct: 322 PVLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETIQ-DGWLCTGDLAR 380

Query: 419 QDEDGYYIILGRK 431
            DEDG+  I+GRK
Sbjct: 381 VDEDGFVYIVGRK 393

Length = 496

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  168 bits (429), Expect = 6e-48
 Identities = 102/373 (27%), Positives = 142/373 (38%), Gaps = 97/373 (26%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ ++AK S EF+   L     G + +PL    P+ EL                    
Sbjct: 26  GDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRLPQEEL-------------------- 65

Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
                                           Q +       + PA I++TSG+TGKPK 
Sbjct: 66  -------------------------QQQLADLQPD------LDRPATIIFTSGSTGKPKA 94

Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
           VVHT  +  A  +   E    T  D +L  LPL HV GL   ++  L AG  +    KF 
Sbjct: 95  VVHTWGNHLASARGSAENLGLTPDDNWLLSLPLFHVSGL-AIVMRSLLAGGALVLPDKFD 153

Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
              I     E++ V         T  + VPT   RL          L++  A     LR 
Sbjct: 154 AEAI-AEALENHGV---------THISLVPTQLQRL----------LESLGARWLSSLRA 193

Query: 308 MMCGSSALPLPVMQQ-----WETITGHRLLERYGMTEFVMA----ISNPLRGARKAGTVG 358
           ++ G + +P  +++Q                 YGMTE   A       P     K G+VG
Sbjct: 194 VLLGGAPIPPSLLEQARQRGIPLYPT------YGMTE--TASQVATLKPDDFLAKLGSVG 245

Query: 359 NPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGK 418
            PLPG +++I            GEI V+ PSLF  Y     +T      DG+F TGD G 
Sbjct: 246 KPLPGRELRIVNP-------QDGEILVRGPSLFLGYLPQGGLTPPLD-EDGWFHTGDLGY 297

Query: 419 QDEDGYYIILGRK 431
            D +GY  +LGR+
Sbjct: 298 LDAEGYLYVLGRR 310

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  168 bits (428), Expect = 4e-47
 Identities = 111/432 (25%), Positives = 185/432 (42%), Gaps = 61/432 (14%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D +A+  D  S +Y +L     R       N L+    + +N            R+ ++ 
Sbjct: 20  DKIALYYDDGSLTYGELQEEVNR-----WGNALRELGIEREN------------RVLLIL 62

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             + EF     G    G + VP+       +  + ++DS   +++ +E+  EVL+    K
Sbjct: 63  LDTPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQK 122

Query: 136 --SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ--RGEDPALIVYTSGTTGKPKGVVHT 191
                   ++      +        + AE+++      +D A  +Y+SG+TG+PKGVVH 
Sbjct: 123 DPHLRHVIVVGGAGPGALSYAQLIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHL 182

Query: 192 HKSID-------AQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244
           H  +          V  +TE       D       L   +GL N L  PL  GAT   MP
Sbjct: 183 HHDMLVTAEAYAKNVLGITE------DDVVFSAAKLFFAYGLGNGLYFPLSVGATTVLMP 236

Query: 245 KF-SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK 303
           +  +   ++       P          T F GVPT+Y  ++   E  + +L         
Sbjct: 237 ERPTPDAVFATIERYKP----------TVFFGVPTLYAAMLAAPEKPERDL--------- 277

Query: 304 QLRLMMCGSSALPLP--VMQQWETITGHRLLERYGMTEFV-MAISNPLRGARKAGTVGNP 360
              L +C S+   LP  +  +W+ + G  +L+  G TE + + +SN   GA K GT G P
Sbjct: 278 -SSLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSN-RPGAVKYGTSGKP 335

Query: 361 LPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQ 419
           +PG +VK+ +++    A G +GE+ V+  S    YW   + T+++F    + +TGD   +
Sbjct: 336 VPGYEVKLVDEDGEEVADGEIGELWVRGDSSAAGYWNRREKTRETFVG-EWTRTGDKYYR 394

Query: 420 DEDGYYIILGRK 431
           DEDGYY   GR 
Sbjct: 395 DEDGYYWYCGRS 406

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  169 bits (431), Expect = 5e-47
 Identities = 91/269 (33%), Positives = 133/269 (49%), Gaps = 29/269 (10%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ---FLHCLPLHHVHGL 226
           +D ALI+YTSGTTGKPKG   TH+++ A      +AW     D     L  LP+ H +GL
Sbjct: 219 DDVALILYTSGTTGKPKGAQLTHRNLFANAAQ-GKAWVPGLGDGPERVLAALPMFHAYGL 277

Query: 227 -FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
                LA    G  +  +P   +  I    ++  P          T   GVP +Y ++ +
Sbjct: 278 TLCLTLAV-SIGGELVLLPAPDIDLILDAMKKHPP----------TWLPGVPPLYEKIAE 326

Query: 286 GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFV-MAI 344
             E    +L          +R    G+ ALP+  ++ WE +TG  L+E YG+TE   + +
Sbjct: 327 AAEERGVDL--------SGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIV 378

Query: 345 SNPLRGARKAGTVGNPLPGVQVKIA--EDESGSDAAG-VGEICVKSPSLFKEYWKLPKVT 401
            NP+   R+ G VG P P  +V+I   ED   +   G  GE+ V+ P +FK YW  P+ T
Sbjct: 379 GNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEET 438

Query: 402 KDSFTADGFFKTGDTGKQDEDGYYIILGR 430
             SF  DG+F+TGD    +EDG+  I+ R
Sbjct: 439 AKSFL-DGWFRTGDVVVMEEDGFIRIVDR 466

Length = 573

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  166 bits (423), Expect = 3e-46
 Identities = 95/420 (22%), Positives = 164/420 (39%), Gaps = 51/420 (12%)

Query: 23  DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV 82
             +  +Y  L     R+++ L                   L G  G R+ I    S E V
Sbjct: 37  LFRELTYGDLRREVARLANAL-----------------KDLGGVKGDRVAIYMPNSPEAV 79

Query: 83  AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL 142
             +L T   G I   ++       +   + D    ++++ +      + +A    A  ++
Sbjct: 80  IALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDAD-AV 138

Query: 143 IPPVPNVSSETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA 197
           +  V  V      +D      S+  + +    +DP  ++YTSGTTGKPKG+VH+H     
Sbjct: 139 LSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLV 198

Query: 198 QVQMLTEAWEYTSADQFLHCL-PLHHVHGLFNALLAPLYAGATVEFMP--KFSVRGIWQR 254
           + ++  +                   ++GL+ ++ +PL +GAT        F        
Sbjct: 199 EHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWE 258

Query: 255 WRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSA 314
             E Y          +T F   PT   RL          ++           L + GS+ 
Sbjct: 259 ALEKY---------KVTIFGTSPTFLRRL----------MKLGLGEPYDLSSLRVLGSAG 299

Query: 315 LPLP--VMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDE 372
            PL     + + +  G  +L+ YG TE  M         +   + G PLPG  V+  +DE
Sbjct: 300 EPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRPPVKNGSS-GLPLPGYAVRRVDDE 358

Query: 373 SGSDAAGVGEICVKS--PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
                 GVGE+ V+   P +   YW  P+  K+++    +++TGD  ++DEDGY+ + GR
Sbjct: 359 GNPVPPGVGELVVRLPWPGMALTYWNDPERYKEAY-FGRWYRTGDWAERDEDGYFWLHGR 417

Length = 528

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  165 bits (421), Expect = 8e-46
 Identities = 126/459 (27%), Positives = 189/459 (41%), Gaps = 90/459 (19%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  AI    ++ SY +L   A R++  L                        G R+ +  
Sbjct: 25  DKTAIVFYGRAISYRELLEEAERLAGYL----------------QQECGVRKGDRVLLYM 68

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           + S +FV        +  + VP+     E EL H + DS   + +   +    +      
Sbjct: 69  QNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGN 128

Query: 136 SG------AKFS----------------LIPPVPNVSSETTVF------DQSQAEKMDGQ 167
                   A++S                  PP+  ++    V                  
Sbjct: 129 LRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAG 188

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-EYTSADQFLHCLPLHHVHGL 226
             +D A++ YTSGTTG PKG +HTH+++ A   + +  W   T     L  LPL HV G+
Sbjct: 189 P-DDLAVLPYTSGTTGVPKGCMHTHRTVMANA-VGSVLWSNSTPESVVLAVLPLFHVTGM 246

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRW-RESYPVNGNRAGEAI-----TAFTGVPTMY 280
            +++ AP+YAGATV  MP         RW RE+       A   I     T +T +PTM 
Sbjct: 247 VHSMNAPIYAGATVVLMP---------RWDREA-------AARLIERYRVTHWTNIPTMV 290

Query: 281 TRLIQ--GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
              +   G    D             LR +  G +A+P  V ++ + +TG   +E YG+T
Sbjct: 291 VDFLASPGLAERDL----------SSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLT 340

Query: 339 EFVMA--ISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEY 394
           E  MA   SNP     K   +G P  GV  ++ + E+  +     VGEI V  P +FK Y
Sbjct: 341 E-TMAQTHSNP-PDRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGY 398

Query: 395 WKLPKVTKDSF-TADG--FFKTGDTGKQDEDGYYIILGR 430
           W  P+ T ++F   DG  FF+TGD G+ DE+GY+ I  R
Sbjct: 399 WNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDR 437

Length = 546

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score =  162 bits (413), Expect = 1e-44
 Identities = 112/467 (23%), Positives = 178/467 (38%), Gaps = 118/467 (25%)

Query: 28  SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLG 87
           +Y +L   A  I++ L +                   G  G R+ ++A P  +FVA   G
Sbjct: 25  TYAELDRRARAIAARLQA------------------LGAPGDRVLLLAPPGLDFVAAFFG 66

Query: 88  TWFSGCIAVPLALSYPESE----LLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLI 143
             ++G IAVP             L  ++ D+    VL+T      L+   +   A     
Sbjct: 67  CLYAGAIAVPAPPPRRLGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAA----- 121

Query: 144 PPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT 203
             +  ++++      +   +      +D A + YTSG+TG PKGV+ TH ++ A ++ + 
Sbjct: 122 LLLLLIAADDLAALAAADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIA 181

Query: 204 EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPV 261
            A+     D  +  LPL+H  GL   LL PLYAG  V  M    F  R +  RW      
Sbjct: 182 RAFGLDPDDVGVSWLPLYHDMGLIGGLLQPLYAGFPVVLMSPLAFLRRPL--RWL----- 234

Query: 262 NGNRAGEAITAF----TGVPTMYTRLIQGYEAMDTELQAASASAAKQL-----RLMMCGS 312
                 EAI+ +    +G P         Y+     ++         L     R+   G+
Sbjct: 235 ------EAISRYRATVSGAPNF------AYDLC---VRRVRDEQLAGLDLSSWRVAFNGA 279

Query: 313 SALPLPVMQQWETITGHRLLER--------------YGMTEFVMAIS------------- 345
                PV  + +T+   R  ER              YG+ E  +A+S             
Sbjct: 280 E----PV--RADTL--ERFAERFAPAGFRPEAFLPCYGLAEATLAVSGGPPGAGPVVLRV 331

Query: 346 --------------NPLRGARKAGTVGNPLPGVQVKIAEDESGS--DAAGVGEICVKSPS 389
                              AR+  + G PLPG +V+I + E+        VGEI V+ PS
Sbjct: 332 DRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVDPETRRPLPDGEVGEIWVRGPS 391

Query: 390 LFKEYWKLPKVTKDSF------TADGFFKTGDTGKQDEDGYYIILGR 430
           +   YW  P+ T ++F         G+ +TGD G   +   Y + GR
Sbjct: 392 VAAGYWNRPEATAETFGARLATDEGGWLRTGDLGFLHDGELY-VTGR 437

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  159 bits (405), Expect = 2e-44
 Identities = 97/367 (26%), Positives = 154/367 (41%), Gaps = 51/367 (13%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G+R+ +V + S E V  +      G     L     E+E  + + D D+ ++L+      
Sbjct: 24  GSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTD----- 78

Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
                     +         +         + +         +  A +++TSGTTGKPK 
Sbjct: 79  ----------SLLEEKDFQADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA 128

Query: 188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
           V HT ++  A      E   +T  D +L  LPL+H+ GL + L   L  GAT+  + KF+
Sbjct: 129 VPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDKFN 187

Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
                        +    A E +T  + VPT   RL+                  + LR 
Sbjct: 188 ------------QLLEMIANERVTHISLVPTQLNRLLD------------EGGHNENLRK 223

Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEF---VMAISNPLRGARKAGTVGNPLPGV 364
           ++ G SA+P P++++ +   G  +   YGMTE    V   +  +  AR    VG PL G 
Sbjct: 224 ILLGGSAIPAPLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHAR--PDVGRPLAGR 280

Query: 365 QVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGY 424
           ++KI  D    +  G GEI VK  +L K Y         +F   G+F TGD G+ D +G+
Sbjct: 281 EIKIKVD----NKEGHGEIMVKGANLMKGYLY-QGELTPAFEQQGWFNTGDIGELDGEGF 335

Query: 425 YIILGRK 431
             +LGR+
Sbjct: 336 LYVLGRR 342

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  157 bits (398), Expect = 5e-44
 Identities = 88/279 (31%), Positives = 127/279 (45%), Gaps = 39/279 (13%)

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
            +D A   +T GTTG PK   H+H++  A   M          D  L+ LPL HV G   
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIV 60

Query: 229 ALLAPLYAGATV------EFMPKFSVRGIWQ---RWRESYPVNGNRAGEAITAFTGVPTM 279
             LAPL  GATV       F     V   W+   R+R             +T  + VPT+
Sbjct: 61  TGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYR-------------VTLLSAVPTV 107

Query: 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
              L+Q        L  A  S    LR  + G++ LP+ V +++E +TG  ++E YGMTE
Sbjct: 108 LAALLQ------VPLGDADIS---SLRYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTE 158

Query: 340 FVMAIS-NPLRGARKAGTVGNPLPGVQVKIAE-DESGS-----DAAGVGEICVKSPSLFK 392
                + NP  G R+ G+VG  LP  +V++A+ D  G+         VG + ++ P++F 
Sbjct: 159 GTGVSAINPRGGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFP 218

Query: 393 EYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
            Y         +   DG+  TGD G+ D DGY  + GR 
Sbjct: 219 GYLN-DAHNAGARLEDGWLNTGDLGRIDADGYLWLTGRA 256

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score =  158 bits (402), Expect = 6e-44
 Identities = 114/423 (26%), Positives = 176/423 (41%), Gaps = 97/423 (22%)

Query: 17  SVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76
             A    ++S +Y +L   A R +++L                   L    G R+ ++  
Sbjct: 1   KTAFYCGEQSLTYRELHDLANRFANVL-----------------RALGVSPGDRVLLLLP 43

Query: 77  PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKS 136
            S E VA  L    +G +AV L       +L H++ DS  +++            V    
Sbjct: 44  DSPELVAAFLACLKAGAVAVALNPLLTPQDLEHILDDSGAALL------------VTE-- 89

Query: 137 GAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSID 196
                                            +D A  +YTSGTTGKPKGV+H H+   
Sbjct: 90  --------------------------------ADDIAYWLYTSGTTGKPKGVMHRHRDPL 117

Query: 197 AQVQ-MLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF----SVRGI 251
              +    E       D+      L   +GL N+LL PL++GA+   +P +    +V  +
Sbjct: 118 TFAEAFARELLGLQPGDRIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDL 177

Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
             R R              T   GVP +Y  L++          A SA   + +RL +  
Sbjct: 178 LARHRP-------------TVLFGVPALYRALLES--------GAGSAPLFRSVRLCVSA 216

Query: 312 SSALPLPVMQQWETITGHRLLERYGMTE--FVMAISNPLRGARKAGTVGNPLPGVQVKIA 369
             ALP  + ++W   TG  +L+  G TE   +   + P  GA + GT G P+PG + ++ 
Sbjct: 217 GEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRP--GAARPGTTGRPVPGYEARLV 274

Query: 370 EDESGSD-AAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYII 427
            DESG +  AG VG++ V+ PSL   YW LP+ T+ +   DG+ +TGD   +D DG+Y  
Sbjct: 275 -DESGREVPAGTVGDLWVRGPSLAPGYWNLPEKTQRTL-RDGWLRTGDRFSRDADGWYRY 332

Query: 428 LGR 430
            GR
Sbjct: 333 QGR 335

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  161 bits (410), Expect = 8e-44
 Identities = 88/280 (31%), Positives = 127/280 (45%), Gaps = 39/280 (13%)

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
             +D A   +T GTTG PK   HTH +  A   +          D     LPL HV+ L 
Sbjct: 211 GPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNALL 270

Query: 228 NALLAPLYAGATVEFMPKFSVRG------IW---QRWRESYPVNGNRAGEAITAFTGVPT 278
              LAPL  GA V        RG       W   +R+R             I   +GVPT
Sbjct: 271 VTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYR-------------INFLSGVPT 317

Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
           +Y  L      +   +     S+   LR  +CG++ LP+ V +++E  TG R++E YG+T
Sbjct: 318 VYAAL------LQVPVDGHDISS---LRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLT 368

Query: 339 EFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAE-DESG-----SDAAGVGEICVKSPSLF 391
           E     S NP  G R+ G+VG  LP  +V++   D++G          VG +C+  P++F
Sbjct: 369 EATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVF 428

Query: 392 KEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
             Y +     K  +  DG+  TGD G+ D DGY+ + GR 
Sbjct: 429 SGYLEAAH-NKGLWLEDGWLNTGDLGRIDADGYFWLTGRA 467

Length = 632

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score =  154 bits (392), Expect = 3e-42
 Identities = 100/432 (23%), Positives = 165/432 (38%), Gaps = 100/432 (23%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D+VA+    +S +Y +L   A R++  L                      G G  + I  
Sbjct: 2   DAVAVVFGDQSLTYRELNERANRLAHYL-----------------RARGVGPGDLVAICL 44

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           + S E V  +L    +G   VPL  +YP   L +++ DS   ++L+  D           
Sbjct: 45  ERSPEMVVAILAVLKAGAAYVPLDPAYPAERLAYMLEDSGAKLLLTDPD----------- 93

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                                              D A ++YTSG+TG+PKGV+  H+ +
Sbjct: 94  -----------------------------------DLAYVIYTSGSTGRPKGVMVEHRGL 118

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK---FSVRGIW 252
              +  L E +  T+ D+ L          ++  +  PL +GAT+   P         + 
Sbjct: 119 VNLLAWLQERYGLTAGDRVLQFASFSFDASVW-EIFPPLLSGATLVLAPPEVLRDPEALA 177

Query: 253 QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312
           +  RE            IT    VP++   L          L A   +A   LRL++ G 
Sbjct: 178 ELLRE----------HRITVLHLVPSLLRAL----------LDALEPAALPSLRLVIVGG 217

Query: 313 SALPLPVMQQW-ETITGHRLLERYGMTEFVMAIS--NPLRGARKAGTV--GNPLPGVQVK 367
            ALP  ++++W E   G RL+  YG TE  + ++           G+V  G P+   +V 
Sbjct: 218 EALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRVY 277

Query: 368 IAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGFF-------KTGDTGKQ 419
           + +++      GV GE+ +    + + Y   P++T + F  D F        +TGD  + 
Sbjct: 278 VLDEDLRPVPVGVPGELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYRTGDLARW 337

Query: 420 DEDGYYIILGRK 431
             DG    LGR 
Sbjct: 338 LPDGNLEFLGRA 349

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  152 bits (387), Expect = 4e-41
 Identities = 115/431 (26%), Positives = 179/431 (41%), Gaps = 55/431 (12%)

Query: 15  RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
            D  A+       +Y QLA    R      +                 L  G G  + ++
Sbjct: 26  PDRPALVLGDTRLTYGQLADRISRYIQAFEA-----------------LGLGTGDAVALL 68

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS-----TEDYREVL 129
           +    E +  +     +G     L       +  +V+ D+ IS ++       E    +L
Sbjct: 69  SLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALL 128

Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGV 188
             V S      +L  PVP+         +   A  +      D A + YT GTTGKPKGV
Sbjct: 129 ARVPSLK-HVLTL-GPVPDGVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGV 186

Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
           + TH+SI    Q+    WE+ +  +FL C PL H  G F   L  L  G TV  + KF  
Sbjct: 187 MGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF--FLPTLLRGGTVIVLAKFDP 244

Query: 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308
             + +   E          + ITA   VPTM   L+   +    +L +        L  +
Sbjct: 245 AEVLRAIEE----------QRITATFLVPTMIYALLDHPDLRTRDLSS--------LETV 286

Query: 309 MCGSSAL-PLPVMQQWETITGHRLLERYGMTEFVMAIS------NPLRGARKAGTVGNPL 361
             G+S + P+ + +  E   G    + YG TE  M I+      +     ++  + G P 
Sbjct: 287 YYGASPMSPVRLAEAIERF-GPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPT 345

Query: 362 PGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQD 420
           PG++V + +++    A G VGEICV+ P +   YW  P+ T ++F  DG+  TGD  ++D
Sbjct: 346 PGLRVALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVARED 404

Query: 421 EDGYYIILGRK 431
           EDG+Y I+ RK
Sbjct: 405 EDGFYYIVDRK 415

Length = 524

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score =  151 bits (384), Expect = 8e-41
 Identities = 110/424 (25%), Positives = 174/424 (41%), Gaps = 47/424 (11%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
              A   D  S SY +L +   R         L+    K +             R+ ++ 
Sbjct: 20  GKTAFIDDISSLSYGELEAQVRR-----LGAALRRLGVKREE------------RVLLLM 62

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
               +F    LG   +G + V L       +  +++ DS   +V  + +   V++    K
Sbjct: 63  LDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGK 122

Query: 136 SGAKFSLI----PPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
           S      +    P    V     +  +S+  K    + +DPA  +Y+SG+TG PKGVVHT
Sbjct: 123 SPHLEHRVVVGRPEAGEVQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHT 182

Query: 192 HKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVR 249
           H +     ++           D       L   +GL NAL  P+  GAT   M  + +  
Sbjct: 183 HSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPD 242

Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309
            ++ R R   P          T F GVPT        Y AM   L   +  A  Q+RL +
Sbjct: 243 AVFDRLRRHQP----------TIFYGVPT-------LYAAM---LADPNLPAEDQVRLRL 282

Query: 310 CGSSALPLP--VMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVK 367
           C S+   LP  V Q+W+   G  +++  G TE +    + L G  + GT G P+PG +++
Sbjct: 283 CTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGYRLR 342

Query: 368 IAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYI 426
           +  D     AAG  GE+ +  PS    YW     T+D+F    + ++GD   +++DG Y 
Sbjct: 343 LVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQG-EWTRSGDKYVRNDDGSYT 401

Query: 427 ILGR 430
             GR
Sbjct: 402 YAGR 405

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  151 bits (383), Expect = 1e-40
 Identities = 100/386 (25%), Positives = 165/386 (42%), Gaps = 41/386 (10%)

Query: 63  LAGGCGAR-------IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSD 115
           LA G  AR       + +++  S EF    L    +G +       Y  +E+   + DS 
Sbjct: 45  LAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSG 104

Query: 116 ISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEK-MDGQRGEDPAL 174
             + ++T +  E L ++A +                +    D+ +    +  Q  +D A 
Sbjct: 105 AKLAITTSELAEKLASLALEPVVLLDSADDGSAAIDDLLFADEPEPPVVVIKQ--DDVAA 162

Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ--FLHCLPLHHVHGLFNALLA 232
           + Y+SGTTG+ KGV+ TH+++ A V  L          +   L  LP+ H++GL   LLA
Sbjct: 163 LPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLA 222

Query: 233 PLYAGATVEFMPKFSVRG---IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
            L  GATV  MP+F +       ++++             +T    VP +   L++    
Sbjct: 223 LLRLGATVVVMPRFDLEKFLAAIEKYK-------------VTHLPVVPPIVLALVKHPIV 269

Query: 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEF--VMAISN 346
              +L          L+ +  G++ L   + + +     G  L + YGMTE   V  +  
Sbjct: 270 DKYDL--------SSLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCP 321

Query: 347 PLRGARKAGTVGNPLPGVQVKIAEDESGSD--AAGVGEICVKSPSLFKEYWKLPKVTKDS 404
                 K G+VG  +P V+ KI + E+G        GE+ V+ P + K Y   P+ T ++
Sbjct: 322 VPEKDPKPGSVGRLVPNVEAKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEATAET 381

Query: 405 FTADGFFKTGDTGKQDEDGYYIILGR 430
              DG+  TGD G  DEDGY  I+ R
Sbjct: 382 IDKDGWLHTGDLGYFDEDGYLFIVDR 407

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  152 bits (386), Expect = 2e-40
 Identities = 103/422 (24%), Positives = 161/422 (38%), Gaps = 51/422 (12%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D+VA+    +  +Y +L + A R++ LL S                 L  G G  + I+A
Sbjct: 242 DAVALVRGGQQLTYAELDARANRLARLLIS-----------------LGVGPGETVAILA 284

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S E V  +L    +G   VPL   YP   L +++ DS  +++L+    R         
Sbjct: 285 DRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRV-------- 336

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                  +     +S         QA       G+  A I+YTSG+TG+PKGV   H+++
Sbjct: 337 DDVGLPGLALDDALSEIPDTDPIPQALL-----GDALAYIIYTSGSTGQPKGVRIEHRAL 391

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRW 255
              +      +   + D+ L    L     +F  +   L  GA +   P           
Sbjct: 392 ANLLNDAGARFGLDADDRVLALASLSFDASVFE-IFGALLEGARLVLAPALLQVDPAALL 450

Query: 256 RESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315
                       + IT    VP +   L      +   L     S  ++LR ++ G  AL
Sbjct: 451 ELL-------EAQGITVLLLVPLLLRLL------LLAALAPDLISPCERLRQLLSGGEAL 497

Query: 316 PLPVMQQWETI--TGHRLLERYGMTEFVMAISNPLRGARKAGTV--GNPLPGVQVKIAED 371
           PL ++Q+   +     RLL  YG TE  +   +    A     V  G P+   Q+ I  D
Sbjct: 498 PLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYIL-D 556

Query: 372 ESGSDAA-GV-GEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILG 429
           +       GV GE+ +    L   Y   P +T + F A   ++TGD  +   DG    LG
Sbjct: 557 QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLG 616

Query: 430 RK 431
           RK
Sbjct: 617 RK 618

Length = 642

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  150 bits (382), Expect = 2e-40
 Identities = 112/437 (25%), Positives = 182/437 (41%), Gaps = 56/437 (12%)

Query: 12  SMAR--DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA 69
           S  R  D  A+    +S++Y +L ++  R+++ L    LK                  G 
Sbjct: 20  SARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKK-----------------GD 62

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           R+  +   S  +    L    +G + VP+       EL +++  S     L         
Sbjct: 63  RVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTA 122

Query: 130 QNVASKSGAKFSL----IPPVPNVSSETTVFD----QSQAEKMDGQRGEDPALIVYTSGT 181
           +   +       +    +             D     S AE       +D A I+YTSGT
Sbjct: 123 EAALALLPVDTLILSLVLGGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGT 182

Query: 182 TGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241
              PKG + TH+++ A+      A + ++ D  LH LPL+H   L   L   LY GAT  
Sbjct: 183 ESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNV 242

Query: 242 FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301
            +       I +              E IT+F   PT++  L++  +    +L +     
Sbjct: 243 ILDAPDPELILRTI----------EAERITSFFAPPTVWISLLRHPDFDTRDLSS----- 287

Query: 302 AKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEFVMA----ISNPLRGARKAGT 356
              LR    G+S +P+ V+++  E + G R    YG TE  +A    +  P    R+ G+
Sbjct: 288 ---LRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTE--IAPLATVLGPEEHLRRPGS 342

Query: 357 VGNPLPGVQVKIAEDESGSD-AAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTG 414
            G P+  V+ ++  D+ G+D A G VGEI  +SP L   YW  P+ T ++F   G+F +G
Sbjct: 343 AGRPVLNVETRV-VDDDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSG 400

Query: 415 DTGKQDEDGYYIILGRK 431
           D G  DE+GY  ++ RK
Sbjct: 401 DLGVMDEEGYITVVDRK 417

Length = 523

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  148 bits (377), Expect = 6e-40
 Identities = 97/422 (22%), Positives = 162/422 (38%), Gaps = 71/422 (16%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+    +  +Y +L ++  R+++ L +  +                 G G R+ +V 
Sbjct: 30  DRTAVVDGPRRLTYRELDAAVDRLAAGLLALGI-----------------GPGDRV-LVQ 71

Query: 76  KP-SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
            P   EFV      +  G I V    ++   E+ H                       A 
Sbjct: 72  LPNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHF----------------------AR 109

Query: 135 KSGAKFSLIPPVPNVSSETTVFD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK 193
           +S AK  +I          + FD  + A ++  +   D AL   + GTTG PK +  TH 
Sbjct: 110 QSEAKAYIIAD------RFSGFDYAALAREL-LEELPDVALFQLSGGTTGLPKLIPRTHN 162

Query: 194 SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLAPLYAGATVEFMPKFSVRGIW 252
                 +   EA        +L  LP  H   L +  LL  L AG TV      S    +
Sbjct: 163 DYLYSARASAEACGLDPGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAF 222

Query: 253 QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312
                          E +T    VP +    ++  E    +L +        LR++  G 
Sbjct: 223 PLIER----------EKVTHTALVPALLNLWLEAAEWDQADLSS--------LRVIQVGG 264

Query: 313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKA-GTVGNPL-PGVQVKIAE 370
           + L   + ++ E   G  L + +GM E ++  +           T G P+ P  +++I +
Sbjct: 265 APLSPELARRVEERLGCPLQQVFGMAEGLVNYTRLDDPPDVIMRTQGRPISPADEIRIVD 324

Query: 371 DESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILG 429
           D+      G VGE+  + P   + Y++ P+    +FT DGF++TGD  + D DGYY ++G
Sbjct: 325 DQGEPVPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDADGYYRVVG 384

Query: 430 RK 431
           R 
Sbjct: 385 RI 386

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  145 bits (368), Expect = 8e-39
 Identities = 107/425 (25%), Positives = 185/425 (43%), Gaps = 66/425 (15%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  AI  ++K  ++ +L  + + ++  L +  +K                  G R+ ++ 
Sbjct: 17  DRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVK-----------------KGDRVALLM 59

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           K   E +  +      G +AV L       ELL  + D+++  +++ +D+       A  
Sbjct: 60  KNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDF------EAKL 113

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK-- 193
                     + N   E    +    E+ D    ++ A I+YTSGTTGKPKGV+ T+   
Sbjct: 114 IPGISVKFAELMNGPKE----EAEIQEEFDL---DEVATIMYTSGTTGKPKGVIQTYGNH 166

Query: 194 ---SIDAQVQM-LTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249
              ++ + + + LTE       D +L  +P+ H+ GL + L+  +  G  V  + KF   
Sbjct: 167 WWSAVGSALNLGLTED------DCWLAAVPIFHISGL-SILMRSVIYGMRVVLVEKFDAE 219

Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309
            I +  +             +T  + V TM  RL++        L   +  ++   R M+
Sbjct: 220 KINKLLQTG----------GVTIISVVSTMLQRLLE-------RLGEGTYPSS--FRCML 260

Query: 310 CGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS--NPLRGARKAGTVGNPLPGVQVK 367
            G    P P+++Q +   G  + + YGMTE    I   +P     K G+ G PL   ++K
Sbjct: 261 LGGGPAPKPLLEQCKE-KGIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELK 319

Query: 368 IAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYII 427
           I +D         GEI VK P++ K Y      T+++F  DG+FKTGD G  DE+G+  +
Sbjct: 320 IEKDGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDEEGFLYV 378

Query: 428 LGRKG 432
           L R+ 
Sbjct: 379 LDRRS 383

Length = 483

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  145 bits (367), Expect = 1e-38
 Identities = 90/276 (32%), Positives = 137/276 (49%), Gaps = 38/276 (13%)

Query: 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
           G + +DPA+I++TSG+ G PKGVV +H+++ A +  +    +  + D  L  LPL H  G
Sbjct: 141 GAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAFG 200

Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI-----TAFTGVPTMY 280
           L   LL PL  G  V + P               P++  +  E I     T   G PT  
Sbjct: 201 LTVTLLLPLLTGLRVVYYPN--------------PLDAKKIAELIRDYKATILCGTPTFL 246

Query: 281 TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF 340
               +GY         +S      LRL++ G+  LP    + +E   G R+LE YG TE 
Sbjct: 247 ----RGYARNAHPEDFSS------LRLVVAGAEKLPEATRELFEEKFGIRILEGYGATEC 296

Query: 341 --VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGE---ICVKSPSLFKEYW 395
             V++++ P+    K GTVG PLPG++V+I   E+  +   +GE   + V+ P++   Y 
Sbjct: 297 SPVISVNTPM--GNKPGTVGRPLPGIEVRIVSPETHEELP-IGEGGLLLVRGPNVMSGYL 353

Query: 396 KLPKVTKDSFTA-DGFFKTGDTGKQDEDGYYIILGR 430
              + T +     DG++ TGD GK DEDG+  I+GR
Sbjct: 354 NNEEKTSEVEVLGDGWYDTGDIGKIDEDGFLTIVGR 389

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score =  144 bits (366), Expect = 3e-38
 Identities = 119/435 (27%), Positives = 186/435 (42%), Gaps = 74/435 (17%)

Query: 23  DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV 82
             + YSY +L     R ++L  S  ++      K +  A+    C         P F F 
Sbjct: 34  VVRRYSYLELNEEINRTANLFYSLGIR------KGDKVALHLDNC---------PEFIFC 78

Query: 83  AGVLGTWFS----GCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA 138
                 WF     G I VP+       E   ++ +S  S+++++  +  + + +  +   
Sbjct: 79  ------WFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDAT 132

Query: 139 KFSLI-------PPVPNVSSETTVFDQSQAEKMDGQR---GEDPALIVYTSGTTGKPKGV 188
               I       P    VSS T +  Q Q   +        +D A I++TSGTT +PKGV
Sbjct: 133 PLRHICLTRVALPADDGVSSFTQLKAQ-QPATLCYAPPLSTDDTAEILFTSGTTSRPKGV 191

Query: 189 VHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
           V TH ++  +      AW+      D +L  +P  H+     A +A   AGAT   + K+
Sbjct: 192 VITHYNL--RFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKY 249

Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ-L 305
           S R  W +  + Y     RA    T    +P M   L+         +Q  SA+  +  L
Sbjct: 250 SARAFWGQVCK-Y-----RA----TITECIPMMIRTLM---------VQPPSANDRQHCL 290

Query: 306 RLMMCGSSALPLPVMQQ----WETITGHRLLERYGMTE-FVMAISNPLRGARKAGTVGNP 360
           R +M       L +  Q    +E   G RLL  YGMTE  V  I +     R+  ++G P
Sbjct: 291 REVM-----FYLNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRP 345

Query: 361 LPGVQVKIAEDESGSDAAG-VGEICVKS---PSLFKEYWKLPKVTKDSFTADGFFKTGDT 416
               + +I +D +    AG +GEIC+K     ++FKEY+  PK T     ADG+  TGDT
Sbjct: 346 GFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDT 405

Query: 417 GKQDEDGYYIILGRK 431
           G  DE+G++  + R+
Sbjct: 406 GYVDEEGFFYFVDRR 420

Length = 517

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  144 bits (365), Expect = 5e-38
 Identities = 116/457 (25%), Positives = 182/457 (39%), Gaps = 113/457 (24%)

Query: 27  YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
            SY ++   AL I S L +  LK                  G +IGI A+   E++    
Sbjct: 6   ISYKEVEERALNIGSGLRALGLKP-----------------GDKIGIFAENRPEWIITEQ 48

Query: 87  GTWFSGCIAVPLALSYPESELLHVMHDSDISMV----LSTEDYREVLQNVASKSG--AKF 140
             +    + VPL  +  E  + +++++++IS+V    +    + E+      + G   K 
Sbjct: 49  ACFSQSLVIVPLYDTLGEEAIEYILNETEISIVFCDAVKVYSFEELE-----ELGKKNKV 103

Query: 141 SLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ 200
              PP P                      ED A I+YTSGTTG PKGV+ TH +I A V 
Sbjct: 104 PPTPPKP----------------------EDLATIMYTSGTTGNPKGVMLTHGNIVAGVA 141

Query: 201 MLTEAWEYTSADQFLHC--LPLHHVHGLFNALLAPLYAGATVEFMPKFS--VRGIWQRWR 256
            + +          ++   LPL H+       +  LY G  + +   +S   RG+    +
Sbjct: 142 GINKIVPEFIGPTDVYISYLPLAHIFERVVENVC-LYIGGRIGY---YSGDTRGLKGDIK 197

Query: 257 ESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS---------ASAAKQ--- 304
           E  P          T F GVP +  R+   Y+ +  ++ A           A   K    
Sbjct: 198 ELKP----------TVFVGVPRVLDRI---YKGILAKVNAKGGLKRTLFNFAYNYKLAAL 244

Query: 305 --------------------------LRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
                                     +RLM+ G + L     +      G  +L+ YG+T
Sbjct: 245 RRGHGYASPLWDKLVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLT 304

Query: 339 EFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAAGV---GEICVKSPSLFKEY 394
           E     +    G    G VG PLP  ++K+ +  E G  A      GEIC++ P++FK Y
Sbjct: 305 ETCAGGTLSDPGDTTTGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGY 364

Query: 395 WKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
           +K P+ T ++F  DG+F TGD G+   DG   I+ RK
Sbjct: 365 YKNPEKTAEAFDEDGWFHTGDIGEWLPDGTLKIIDRK 401

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  140 bits (355), Expect = 7e-38
 Identities = 77/272 (28%), Positives = 128/272 (47%), Gaps = 28/272 (10%)

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
            +D A I+YTSG+TG+PKGV+ +H+++ A  + + +  E T  D+ L  LP    +GL +
Sbjct: 1   DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYGL-S 59

Query: 229 ALLAPLYAGATVEFMPKFS-VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
            LL     G T+    +F+  R + +   +          E IT F GVPT + +L++  
Sbjct: 60  QLLTAFRVGGTLVLESRFAFPRDVLKHLAK----------ERITGFAGVPTTWAQLLR-- 107

Query: 288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTE-FVMAIS 345
             +D   +    S    LR +     ALP   + Q        +L   YG+TE F     
Sbjct: 108 --LDPLAREDFPS----LRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYL 161

Query: 346 NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDS 404
            P    R+  ++G  +P V++ + +++    A G VGE+  +  ++ K YW  P+ T + 
Sbjct: 162 PPEELDRRPDSIGKAIPNVELWVVDEDGNRCAPGEVGELVHRGANVMKGYWNDPEATAER 221

Query: 405 F-----TADGFFKTGDTGKQDEDGYYIILGRK 431
                   +    TGD  + DE+GY   +GRK
Sbjct: 222 LRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRK 253

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  143 bits (361), Expect = 2e-37
 Identities = 115/405 (28%), Positives = 183/405 (45%), Gaps = 56/405 (13%)

Query: 63  LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122
           L    G R+ I+     + V G  GT  +G I V     Y E EL + +HDS   ++L  
Sbjct: 69  LGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCL 128

Query: 123 EDYREVLQNVASKSGAKFSLIP------PVPN-----------------VSSETTVFDQS 159
           +     + NV S +  +  ++       P P                  VS   T+   +
Sbjct: 129 DLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWN 188

Query: 160 QAEK-------MDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD 212
             EK       +      D AL+ YT GTTG PKGV+ THK++ +   M  + W Y   +
Sbjct: 189 SVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQ-WLYNCKE 247

Query: 213 Q---FLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEA 269
                L  LP  HV+G+   +   +  G  +  +PKF ++ +++  ++            
Sbjct: 248 GEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKK----------HK 297

Query: 270 ITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH 329
           +T F G PT+Y  L+      + ++ +        +R  + GS+ LP+ V +++ET+TG 
Sbjct: 298 VTLFPGAPTIYIALLNSPLLKEYDISS--------IRACISGSAPLPVEVQEKFETVTGG 349

Query: 330 RLLERYGMTEFV-MAISNPLRGARKAGTVGNPLPGVQVKIAEDESGS--DAAGVGEICVK 386
           +L+E YG+TE   +  SN L   R  G++G P P  +  I   E+G       +GEI VK
Sbjct: 350 KLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVK 409

Query: 387 SPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
            P + K YW  P+ T  +   DG+  TGD G  DEDG++ +  RK
Sbjct: 410 GPQIMKGYWNKPEETA-AVLQDGWLHTGDVGYMDEDGFFYVKDRK 453

Length = 563

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  134 bits (340), Expect = 2e-34
 Identities = 113/457 (24%), Positives = 185/457 (40%), Gaps = 82/457 (17%)

Query: 15  RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
           R+++ +R     Y++ QLA +  R++  L                   L    G R+GI 
Sbjct: 34  REALVVRHQALRYTWRQLADAVDRLARGL-----------------LALGVQPGDRVGIW 76

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS-----TEDYREVL 129
           A    E++     T   G I V +  +Y  SEL + +  S +  V+      T DY  +L
Sbjct: 77  APNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAML 136

Query: 130 QNVAS--KSGAKFSLIPP-----------VPNVSSETTVFD--QSQAEKMDGQR------ 168
           Q +      G   +L               P        +   Q++ E +  +       
Sbjct: 137 QELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQA 196

Query: 169 ---GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
               +DP  I YTSGTTG PKG   +H +I      + E+   T  D+    +PL+H  G
Sbjct: 197 SLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFG 256

Query: 226 LFNALLAPLYAGATV-----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY 280
           +  A L  +  GA +      F P  +++ +                E  TA  GVPTM+
Sbjct: 257 MVLANLGCMTVGACLVYPNEAFDPLATLQAV--------------EEERCTALYGVPTMF 302

Query: 281 TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ-WETITGHRLLERYGMTE 339
              +   +  + +L +        LR  +   +  P+ VM++  + +    +   YGMTE
Sbjct: 303 IAELDHPQRGNFDLSS--------LRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTE 354

Query: 340 -----FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKE 393
                     ++ L   R+  TVG   P ++VK+ + +  +   G +GE+C +  S+ K 
Sbjct: 355 TSPVSLQTTAADDLE--RRVETVGRTQPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKG 412

Query: 394 YWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
           YW  P+ T +S   DG+  TGD    DE GY  I+GR
Sbjct: 413 YWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGR 449

Length = 558

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  132 bits (334), Expect = 2e-34
 Identities = 92/397 (23%), Positives = 148/397 (37%), Gaps = 86/397 (21%)

Query: 47  DLKTTSEKTKNENSAVLAGGC---GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYP 103
           +LK  S++  N     L       G R+ ++     E  A +LG    G + +P      
Sbjct: 5   ELKEESDRAAN----FLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60

Query: 104 ESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEK 163
             ++ + +  +    ++++ D                                       
Sbjct: 61  PKDIRYRLERAGARAIVTSAD--------------------------------------- 81

Query: 164 MDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHV 223
                  DPAL+ +TSGTTG PK V+HTH      +       +    D           
Sbjct: 82  -------DPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWA 134

Query: 224 HGLFNALLAPLYAGATVEF--MPKFSVR---GIWQRWRESYPVNGNRAGEAITAFTGVPT 278
            G +++L AP   GA V      +F       + +R+              +T F   PT
Sbjct: 135 KGAWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYG-------------VTTFCAPPT 181

Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
            Y  L+Q         Q  S+     LR ++     L   V+  W   TG  + + YG T
Sbjct: 182 AYRMLLQ---------QDLSSYDFSHLRHVVSAGEPLNPEVIDWWRAATGLPIRDGYGQT 232

Query: 339 EFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVK----SPSLFKE 393
           E  + ++N      K G++G P PG +V I +DE      G  G+I V+     P LF+ 
Sbjct: 233 ETGLLVANFPGMEVKPGSMGRPAPGYRVAIIDDEGNELPPGEEGDIAVRVKPRPPGLFRG 292

Query: 394 YWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
           Y K P+ T+ +     ++ TGD   +DEDGY+  +GR
Sbjct: 293 YLKDPEKTEATI-RGDWYLTGDRAIKDEDGYFWFVGR 328

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  134 bits (338), Expect = 3e-34
 Identities = 111/409 (27%), Positives = 168/409 (41%), Gaps = 54/409 (13%)

Query: 49  KTTSEKTKNENSAVLAG-------GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS 101
            TT+ +  ++  A LAG       G G R+ I+     EFV  VL     G IAVP+   
Sbjct: 41  NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFR 100

Query: 102 YPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV--SSETTVFDQS 159
               E+  ++ D    +V+ TE     L  VA+       L+  V     SS+ +V    
Sbjct: 101 LTPPEIAFLVSDCGAHVVV-TEA---ALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYE 156

Query: 160 QAEKMDGQR------GED-PALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD 212
                 G          D PALI+YTSGTTG+PKG V TH ++  Q              
Sbjct: 157 DLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINS 216

Query: 213 QFLHC-LPLHHVHGLFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEA 269
                 +PL H+ G+ + +L  L  GA     P   F    +                E 
Sbjct: 217 DVGFVGVPLFHIAGIGS-MLPGLLLGAPTVIYPLGAFDPGQLLDVL----------EAEK 265

Query: 270 ITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP---VMQQWETI 326
           +T    VP  +  +            A   +  + L L +    A P     + Q   T 
Sbjct: 266 VTGIFLVPAQWQAVC-----------AEQQARPRDLALRVLSWGAAPASDTLLRQMAATF 314

Query: 327 TGHRLLERYGMTEFVMAISNPLRG---ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGE 382
              ++L  +G TE +  ++  L G    RK G+VG  +P V  ++ ++       G VGE
Sbjct: 315 PEAQILAAFGQTE-MSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGEVGE 373

Query: 383 ICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
           I  ++P+L   YW  P+ T ++F A G+F +GD  +QDE+GY  ++ RK
Sbjct: 374 IVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDEEGYVWVVDRK 421

Length = 542

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score =  131 bits (332), Expect = 7e-34
 Identities = 93/434 (21%), Positives = 152/434 (35%), Gaps = 111/434 (25%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D+VA+     S +Y +L   A +++  L S                 L    G  + +  
Sbjct: 7   DAVAVDFWDGSLTYAELDRRANKLAHHLIS-----------------LGVRPGDIVALCL 49

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           + S      +L    +G   VP+  S P   L  ++ DS  ++VL++             
Sbjct: 50  ERSPWLYVAILAVLKAGAAYVPIDPSAPVERLQFIIEDSGATVVLTS------------- 96

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                                             +DPA ++YTSG+TGKPKGVV TH++I
Sbjct: 97  --------------------------------SPDDPAYVIYTSGSTGKPKGVVITHRNI 124

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPKFSVRGI 251
              ++           D+ L    +      F+     +   L AG T+   P+      
Sbjct: 125 CNFLRAEGAILGIRPGDRVLQFASIA-----FDVSILEIFTTLLAGGTLVIPPEELRLED 179

Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
              +     +N  R    +T     P++   L                     LR ++ G
Sbjct: 180 LAEF-----LNRLR----VTVAHLTPSLLALL--------------DPEDVPSLRTLILG 216

Query: 312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQVKIA 369
             A P  ++ +W      RLL  YG TE    ++         K   +G PLP     + 
Sbjct: 217 GEACPQALVDRW--SKPRRLLNTYGPTE--ATVTATASRLTPGKPVNIGRPLPNYTCWVL 272

Query: 370 EDESGSDAA--GVGEICVKSPSLFKEYWKLPKVTKDSFTADGF---------FKTGDTGK 418
           + +         VGE+C+  P + + Y   P++T + F  D F         ++TGD  +
Sbjct: 273 DPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVR 332

Query: 419 QDEDGYYIILGRKG 432
             EDG    LGRK 
Sbjct: 333 YLEDGSLEFLGRKD 346

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  131 bits (333), Expect = 9e-34
 Identities = 101/412 (24%), Positives = 171/412 (41%), Gaps = 82/412 (19%)

Query: 63  LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLA--------LSYPESELLHVMHDS 114
           L    G R+  +A  +       L  +F    AVP                ++ ++++ +
Sbjct: 45  LGVKPGDRVATLAWNTHRH----LELYF----AVPGMGAVLHTLNPRLSPEQIAYIINHA 96

Query: 115 DISMVLSTEDYREVLQNVASK----------SGAKFSLIPPVPNVSSETTVFDQSQAEKM 164
           +  ++   +D+  +L+ +A +            A           + E  + ++S   + 
Sbjct: 97  EDKVIFVDDDFLPLLEAIAPRLPTVKAVVVYDDADMPETSLPNVYAYEELLEEESPEYEW 156

Query: 165 DGQRGEDPALIVYTSGTTGKPKGVVHTHKSI--DAQVQMLTEAWEYTSADQFLHCLPLHH 222
                   A + YTSGTTG PKGVV++H+S+        L ++   + +D  L  +P+ H
Sbjct: 157 PELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSESDTVLPVVPMFH 216

Query: 223 VH--GLFNALLAPLYAGATVEF-----MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTG 275
           V+  GL  A  A +  GA +        P   +  I                E +T   G
Sbjct: 217 VNAWGLPYA--ATM-VGAKLVLPGRYLDPASLLDLI--------------EEEKVTVSAG 259

Query: 276 VPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERY 335
           VPT++  L+   EA   +L +        LR ++ G SALP  ++++ E   G  ++  +
Sbjct: 260 VPTIWLGLLNYLEANGKDLSS--------LRRVVVGGSALPRSLIEKLEER-GVEVIHAW 310

Query: 336 GMTEF--VMAISNP------------LRGARKAGTVGNPLPGVQVKIAEDESGS---DAA 378
           GMTE   +  +S              L    K G    P+PGV+++I +DE      D  
Sbjct: 311 GMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGR---PVPGVELRIVDDEGNELPWDGK 367

Query: 379 GVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
            VGE+ V+ P +   Y+K P+   +  T DG+F+TGD    DEDGY  I  R
Sbjct: 368 TVGELVVRGPWVTGSYYKDPE-KTEELTRDGWFRTGDVAVIDEDGYIQITDR 418

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  131 bits (331), Expect = 3e-33
 Identities = 93/279 (33%), Positives = 132/279 (47%), Gaps = 40/279 (14%)

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQV-QMLTEAW------EYTSADQ--FLHCLP 219
            +D A + YT GTTG  KG    H++I A V QM  EAW      +    DQ  F+  LP
Sbjct: 203 PDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQM--EAWLQPAFEKKPRPDQLNFVCALP 260

Query: 220 LHHVHGL-FNALLAPLYAGATVEFMPKFSVRGIWQRWRE--SYPVNGNRAGEAITAFTGV 276
           L+H+  L    LL  +  G     +P  + R I    +E   Y V+          F  V
Sbjct: 261 LYHIFALTVCGLLG-MRTGGRNILIP--NPRDIPGFIKELKKYQVH---------IFPAV 308

Query: 277 PTMYTRLIQ--GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLER 334
            T+Y  L+    ++ +D            +L +   G  A+  PV ++W  +TG  + E 
Sbjct: 309 NTLYNALLNNPDFDKLDF----------SKLIVANGGGMAVQRPVAERWLEMTGCPITEG 358

Query: 335 YGMTEFV-MAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFK 392
           YG++E   +A  NP+     +GT+G PLP  +V I +D+      G  GEIC++ P +  
Sbjct: 359 YGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEPGEICIRGPQVMA 418

Query: 393 EYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
            YW  P  T    TADGFF+TGD G  DE GY  I+ RK
Sbjct: 419 GYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRK 457

Length = 557

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score =  128 bits (324), Expect = 8e-33
 Identities = 89/433 (20%), Positives = 161/433 (37%), Gaps = 101/433 (23%)

Query: 15  RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
            D  A+     + +Y +L   A R+++ L                   L G  G  + + 
Sbjct: 5   PDRPALVVGGDTLTYAELKERADRLAARL-----------------LALGGRAGDPVAVY 47

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
              S +  A +L    +G   VPL  S P   +  ++  +  + +++  D          
Sbjct: 48  GHKSPDAYAAILACLKAGAAYVPLDPSQPAERIAKILEAAGPAALVADPD---------- 97

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
                                               D A I++TSG+TGKPKGV  +H +
Sbjct: 98  ------------------------------------DLAYILFTSGSTGKPKGVQISHAN 121

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLH---HVHGLFNALLAPLYAGATVEFMPK--FSVR 249
           + + +  + E ++ T  D F +  P      V  LF AL +    GAT+  +PK   +  
Sbjct: 122 LASFLDWMVEDFDLTEGDVFSNQAPFSFDLSVFDLFPALAS----GATLYVIPKEQIADP 177

Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309
                + + +          +T +  VP+ +  L+     ++ E           LR  +
Sbjct: 178 LALFEFLKEHG---------LTVWVSVPS-FASLLLLSRELNPES-------LPSLRTFL 220

Query: 310 -CGSSALPLPVMQQW-ETITGHRLLERYGMTEFVMA-----ISNPLRGARKAGTVGNPLP 362
            CG   LP  + +         R++  YG TE  +A     ++       +   +G P P
Sbjct: 221 FCGE-VLPKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPIGYPKP 279

Query: 363 GVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTAD---GFFKTGDTGK 418
           G++  I +++      G  GE+ +  P +   Y   P+ T  +F  D    +++TGD   
Sbjct: 280 GLRALILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVY 339

Query: 419 QDEDGYYIILGRK 431
            ++DG  + LGRK
Sbjct: 340 LEDDGLLVYLGRK 352

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  129 bits (325), Expect = 1e-32
 Identities = 106/410 (25%), Positives = 173/410 (42%), Gaps = 75/410 (18%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAV---PLALSYPESELLHVMHDS---------- 114
           G RI +      ++   V G   +G I V   PL   Y   E+ H  +DS          
Sbjct: 75  GDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPL---YTAREMEHQFNDSGAKALVCLAN 131

Query: 115 ------------DISMVLSTE------DYREVLQNVASKSGAKFSLIPP--VPNVSSETT 154
                        +  V+ TE        + +L N   K   K  ++P   +P       
Sbjct: 132 MAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKK--MVPAYHLPQAVKFND 189

Query: 155 VFDQSQAEKMD--GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA---QVQMLTEAWEYT 209
              +   + +     + +D A++ YT GTTG  KG + TH+++ A   Q + L  +    
Sbjct: 190 ALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNE 249

Query: 210 SADQFLHCLPLHHVHGL-FNALLAPLYAGATVEF-----MPKFSVRGIWQRWRESYPVNG 263
             +  +  LPL+H++   F+ +   L     +       +P   V+ +  +W+       
Sbjct: 250 GCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAM-VKEL-GKWK------- 300

Query: 264 NRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW 323
                  + F G+ T++  L       +   +    SA   L+L + G  AL L   ++W
Sbjct: 301 ------FSGFVGLNTLFVALCN-----NEAFRKLDFSA---LKLTLSGGMALQLATAERW 346

Query: 324 ETITGHRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VG 381
           + +TG  + E YGMTE    +S NP   A + GT+G P+P    K+ +D+      G VG
Sbjct: 347 KEVTGCAICEGYGMTETSPVVSVNP-SQAIQVGTIGIPVPSTLCKVIDDDGNELPLGEVG 405

Query: 382 EICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
           E+CVK P + K YW+ P+ T +   +DG+ KTGD     EDGY  I+ RK
Sbjct: 406 ELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRK 455

Length = 562

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  124 bits (314), Expect = 1e-31
 Identities = 100/428 (23%), Positives = 165/428 (38%), Gaps = 121/428 (28%)

Query: 27  YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
           Y++ QL  ++ R+++ L    ++                  G R+G+    S E     L
Sbjct: 7   YTFGQLKDASNRLANALRELGVER-----------------GDRVGVYLPQSPETAIAHL 49

Query: 87  GTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPV 146
             +  G ++VPL++ +    + H + DS  + VL T+                       
Sbjct: 50  AVYKLGAVSVPLSVLFGPDAVEHRLRDSG-ARVLVTD----------------------- 85

Query: 147 PNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW 206
                                  +DPA+++YTSGTTG PKG +H H+ +   +  +   +
Sbjct: 86  ---------------------GSDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYF 124

Query: 207 E---------YTSADQFLHCLPLHHVHGLFNALLAPLYAGATV------EFMPKFSVRGI 251
           E         +T AD          + GL + LL  LY G  V       F P+ +   +
Sbjct: 125 ELAPRPGDVFWTPAD-------WAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFA-L 176

Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
            +R+  +             AF  +P    ++++          +  A    +LR +  G
Sbjct: 177 MRRYGVT------------NAF--LPPTALKMMRRVG-------SERARYDLRLRAVASG 215

Query: 312 SSALPLPVMQQWETITGHRLL-----ERYGMTEFVMAISN-PLRGARKAGTVGNPLPGVQ 365
             +L    + +W        L     E YG TE  + + N    G  + G++G P+PG +
Sbjct: 216 GESLG-EELLEW----ARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGHE 270

Query: 366 VKIAEDESGSDAAG-VGEICVKS--PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDED 422
           V + +D       G VGEI VK   P +F  YW  P+ T   F A  +  TGD G++D D
Sbjct: 271 VAVVDDAGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKF-AGDWLLTGDLGRRDAD 329

Query: 423 GYYIILGR 430
           GY    GR
Sbjct: 330 GYLWFKGR 337

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  125 bits (316), Expect = 1e-31
 Identities = 100/383 (26%), Positives = 171/383 (44%), Gaps = 48/383 (12%)

Query: 61  AVLAG-GC--GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDIS 117
           AVL   GC  G R+ ++A+ S   VA        G I VPL      SEL  ++ D++  
Sbjct: 37  AVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSASELDALLQDAEPR 96

Query: 118 MVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVY 177
           ++L  +        VA+       L   + +  +            +  +R    +LI++
Sbjct: 97  LLLGDD-------AVAAGRTDVEDLAAFIASADALEPAD----TPSIPPER---VSLILF 142

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
           TSGT+G+PKGV+ + +++              +   FL   P+ H+ GL  ++   L  G
Sbjct: 143 TSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVG 202

Query: 238 ATVE----FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE 293
            ++     F PK ++       R   P  G      IT +  VP M  +  +     D  
Sbjct: 203 GSILVSNGFEPKRTLG------RLGDPALG------ITHYFCVPQM-AQAFRAQPGFD-- 247

Query: 294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE----FVMAISNPLR 349
                A+A + L  +  G +      +  W    G  +++ +GM+E    F M++ +   
Sbjct: 248 -----AAALRHLTALFTGGAPHAAEDILGWLD-DGIPMVDGFGMSEAGTVFGMSV-DCDV 300

Query: 350 GARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTAD 408
              KAG  G P P VQ ++ +D+     AGV GE+ ++ P+L   YW+ P+ T  +FT D
Sbjct: 301 IRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGD 360

Query: 409 GFFKTGDTGKQDEDGYYIILGRK 431
           G+F+TGD  ++D DG++ ++ RK
Sbjct: 361 GWFRTGDIARRDADGFFWVVDRK 383

Length = 488

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score =  124 bits (314), Expect = 5e-31
 Identities = 107/424 (25%), Positives = 166/424 (39%), Gaps = 85/424 (20%)

Query: 61  AVLAG---GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDIS 117
           A+L     G G R+ +      +F     G    G + VP++  + E EL + ++D+   
Sbjct: 73  ALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAE 132

Query: 118 MVLSTEDYREVLQNVASKSG-------AKFSLIP-----PVPNVSSETTVFDQSQAEKMD 165
           ++L+ +    V++ V +++        +   ++P     P+P+      +      + + 
Sbjct: 133 VLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLP 192

Query: 166 GQRGE------------DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ 213
             R                A + YT GTTG PKG  HT +       M+  A    +   
Sbjct: 193 ALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQR------DMVYTAAAAYAVAV 246

Query: 214 -------FLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRA 266
                  FL  LP   + G    LL PL++GAT+  +          RW           
Sbjct: 247 VGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLL---------ARW----------- 286

Query: 267 GEAITAFTGVP----TMYTRLIQGY-EAMDTELQAASASAAKQLRLMMCGSSALPL-PVM 320
            +A+     V     T    L+    E MD      +      LR +   S    L P  
Sbjct: 287 -DAVAFMAAVERYRVTRTVMLVDNAVELMDHP--RFAEYDLSSLRQVRVVSFVKKLNPDY 343

Query: 321 -QQWETITGHRLLE-RYGMTE------FVMAISN---PLRGARKAGTVGNPLPGVQVKIA 369
            Q+W  +TG  L E  +GMTE      F     +    L        VG P+PG + KI 
Sbjct: 344 RQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQ--PVFVGLPVPGTEFKIC 401

Query: 370 EDESGS--DAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYII 427
           + E+G        GEI V++PSL K YW  P+ T ++   DG+  TGD GK DE G+   
Sbjct: 402 DFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALR-DGWLHTGDIGKIDEQGFLHY 460

Query: 428 LGRK 431
           LGR+
Sbjct: 461 LGRR 464

Length = 567

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  124 bits (312), Expect = 6e-31
 Identities = 102/349 (29%), Positives = 159/349 (45%), Gaps = 49/349 (14%)

Query: 96  VPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN-VSSETT 154
           +P+AL + E  LL      D  +V   +++         K G   + IP  P  V+    
Sbjct: 131 LPMALKFLEKGLL------DRLIVCEDDNW--------GKVGTPQAPIPADPRIVTYADF 176

Query: 155 VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW------EY 208
           V   +   +      +D AL+ YT GTTG PKG + TH ++ + V +  + W        
Sbjct: 177 VKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATR 235

Query: 209 TSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGE 268
              ++ +  LPL H++ L   LL  L  G  +    +F V  +++   E       RA  
Sbjct: 236 GDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEE------KRA-- 287

Query: 269 AITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV--MQQWETI 326
             T F GVPTM+  L     A D  L+    S+     L   GS   PLPV     +E  
Sbjct: 288 --TVFPGVPTMWIAL-----ANDPSLEKRDLSS-----LATIGSGGAPLPVEVANFFERK 335

Query: 327 TGHRLLERYGMTEFVM-AISNPLRGARKAGTVGNPLPGVQVKIA--EDESGSDAAG-VGE 382
           TG +L   +GMTE       +P  G  K G++G  LPG+++ +   +D +     G VGE
Sbjct: 336 TGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGE 395

Query: 383 ICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
           + ++ P++ + YW  P+ + ++F  D F  TGD G  D DGY+ ++ RK
Sbjct: 396 LRIRGPNVTRGYWNRPEESAEAFVGDRFL-TGDIGYMDTDGYFFLVDRK 443

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score =  124 bits (312), Expect = 6e-31
 Identities = 100/387 (25%), Positives = 159/387 (41%), Gaps = 49/387 (12%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL------- 120
           G R+ +    + EFV  +L    +  + VPL  + P +E       +   +VL       
Sbjct: 68  GDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPH 127

Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
                T  +  +  NV   SG     +    + ++E T    S  E +      D A+I+
Sbjct: 128 DRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPTP-ATSTPEGL----RPDDAMIM 182

Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA 236
           +T GTTG PK V  TH +I + V+ +   +  +  D  +  +PL+H HGL  ALLA L +
Sbjct: 183 FTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLAS 242

Query: 237 GATVEFMP---KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE 293
           G  V  +P   +FS    W   +              T +T VPT++  L+   E   TE
Sbjct: 243 GGAV-LLPARGRFSAHTFWDDIKAV----------GATWYTAVPTIHQILL---ERAATE 288

Query: 294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARK 353
               S      LR +   S+ L     Q  +T     ++  +GMTE    ++        
Sbjct: 289 ---PSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTT--TQIEG 343

Query: 354 AGTVGNPL---------PGVQVKIAEDESGS-DAAGVGEICVKSPSLFKEYWKLPKVTKD 403
            G   NP+          G Q++I   +     A  VGE+ ++  ++ + Y   P +T  
Sbjct: 344 IGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAA 403

Query: 404 SFTADGFFKTGDTGKQDEDGYYIILGR 430
           +FT DG+ +TGD G     G   I GR
Sbjct: 404 NFT-DGWLRTGDLGSLSAAGDLSIRGR 429

Length = 534

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  121 bits (306), Expect = 5e-30
 Identities = 86/278 (30%), Positives = 133/278 (47%), Gaps = 42/278 (15%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA------DQFLHCLPLHHV 223
           +D A + YT GTTG  KG + TH+++ A +Q     W   +       +  +  LPL+H+
Sbjct: 208 DDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQ-AHQWLAGTGKLEEGCEVVITALPLYHI 266

Query: 224 HGLF-NALLAPLYAG-----ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVP 277
             L  N L+     G     +    MP F V+ + ++ R              TAFTGV 
Sbjct: 267 FALTANGLVFMKIGGCNHLISNPRDMPGF-VKEL-KKTR-------------FTAFTGVN 311

Query: 278 TMYTRLIQ--GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERY 335
           T++  L+   G++ +D             L++ + G  A+   V ++W+ +TG  L+E Y
Sbjct: 312 TLFNGLLNTPGFDQIDFS----------SLKMTLGGGMAVQRSVAERWKQVTGLTLVEAY 361

Query: 336 GMTEFV-MAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKE 393
           G+TE    A  NPL      G++G P+P     I +D     A G +GE+C+K P + K 
Sbjct: 362 GLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKG 421

Query: 394 YWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
           YWK P+ T     ADG+  TGD  + DE G+  I+ RK
Sbjct: 422 YWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRK 459

Length = 560

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score =  121 bits (305), Expect = 8e-30
 Identities = 78/265 (29%), Positives = 123/265 (46%), Gaps = 25/265 (9%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +D   ++YTSGTTG+PKGV+HT  ++ A +    E     + D  L   P+ H  G    
Sbjct: 197 DDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYG 256

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
           L+ P+  GAT        ++ IW   R +  +      E +T FT   T +         
Sbjct: 257 LMMPVMLGATA------VLQDIWDPARAAELI----RTEGVT-FTMASTPF--------L 297

Query: 290 MD-TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-FVMAISNP 347
            D T     S      LR  +C  + +P  ++++     G +++  +GMTE   + ++  
Sbjct: 298 TDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKL 357

Query: 348 LRGARKAGTV-GNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSF 405
                +A T  G PLPGV+V++ + +     AG +G + V+  S F  Y K P++     
Sbjct: 358 DDPDERASTTDGCPLPGVEVRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD- 416

Query: 406 TADGFFKTGDTGKQDEDGYYIILGR 430
            ADG+F TGD  + D DGY  I GR
Sbjct: 417 -ADGWFDTGDLARIDADGYIRISGR 440

Length = 547

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score =  118 bits (299), Expect = 2e-29
 Identities = 99/437 (22%), Positives = 170/437 (38%), Gaps = 117/437 (26%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D++A+R D ++ SY +L   + ++++ L +                 L  G G R+G++ 
Sbjct: 2   DAIALRDDDRTLSYAELDERSNQLAARLRA-----------------LGVGPGDRVGVLL 44

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           + S + VA +L    +G   VPL  SYP   L +++ D++ +++L+              
Sbjct: 45  ERSADLVAALLAILKAGAAYVPLDPSYPAERLQYMLEDAEPALLLT-------------- 90

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                                             +D A ++YTSG+TGKPKGV  +H+++
Sbjct: 91  --------------------------------DPDDLAYVIYTSGSTGKPKGVEVSHRAL 118

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA------------LLAPLYAGATVEFM 243
              +  +       ++D+ L             A            LL PL +GATV   
Sbjct: 119 VNFLLSMARRPGLGASDRLL-------------AVTTISFDISVLELLLPLLSGATVVIA 165

Query: 244 PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK 303
              +VR            +  R    I       T    ++Q   A    L AA     +
Sbjct: 166 SAETVR------------DPERLARLIAD--ERIT----IMQATPATWRMLLAAGWRGRE 207

Query: 304 QLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF-VMAISNPLRGARKAGTVGNPLP 362
            L  + CG  ALP  + ++  + TG  L   YG TE  + +    +  A    T+G P+ 
Sbjct: 208 SLTAL-CGGEALPRDLAERLLS-TGAELWNMYGPTETTIWSTCARVTAADGPVTIGRPIA 265

Query: 363 GVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGF-------FKTG 414
             QV + +++      GV GE+ +    + + Y   P++T + F  D F       ++TG
Sbjct: 266 NTQVYVLDEDLQPVPPGVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTG 325

Query: 415 DTGKQDEDGYYIILGRK 431
           D  +   DG    LGR 
Sbjct: 326 DLVRWRPDGRLEYLGRA 342

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  119 bits (301), Expect = 3e-29
 Identities = 117/416 (28%), Positives = 174/416 (41%), Gaps = 88/416 (21%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE---- 123
           G R+GI A    E+V     T   G I V +  +Y  SEL + ++ S    +++ +    
Sbjct: 68  GDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKD 127

Query: 124 -DYREVLQNVA-----SKSGA------------------KFSLIPPVPNVSSETTVFDQS 159
            DY  +L  +A      + G                   K   +     + +     D +
Sbjct: 128 SDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEKHPGMLNFDELLALGRAVDDA 187

Query: 160 Q-AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCL 218
           + A +      +DP  I YTSGTTG PKG   TH++I      + EA + T  D+    +
Sbjct: 188 ELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPV 247

Query: 219 PLHHVHGLFNALLAPLYAGATV-----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
           PL+H  G+    LA +  GAT+      F P  ++  + +              E  TA 
Sbjct: 248 PLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEE--------------ERCTAL 293

Query: 274 TGVPTMYTRLIQGYEAMDTELQAAS---ASAAKQLRL-MMCGSSALPLPVMQQWE----- 324
            GVPTM+   I    A       A    +S    LR  +M GS   P+ VM++       
Sbjct: 294 YGVPTMF---I----AELDHPDFARFDLSS----LRTGIMAGSPC-PIEVMKRVIDKMHM 341

Query: 325 ---TITGHRLLERYGMTE-----FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSD 376
              TI        YGMTE           +PL   ++  TVG  LP ++VKI + E+G  
Sbjct: 342 SEVTIA-------YGMTETSPVSTQTRTDDPLE--KRVTTVGRALPHLEVKIVDPETGET 392

Query: 377 AA-GV-GEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
              G  GE+C +  S+ K YW  P+ T ++  ADG+  TGD    DE+GY  I+GR
Sbjct: 393 VPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGR 448

Length = 559

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score =  117 bits (295), Expect = 1e-28
 Identities = 84/268 (31%), Positives = 124/268 (46%), Gaps = 31/268 (11%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +D   ++YTSGTTG+PKGV+HT  ++ + +    E  E    D  L   P+ H  G    
Sbjct: 195 DDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYG 254

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVP-TMYTRLIQGYE 288
           L+ PL   AT        ++ IW         N  RA E I   TGV  TM         
Sbjct: 255 LMMPLILNATA------VLQDIW---------NPARAAELIRE-TGVTFTM------AST 292

Query: 289 AMDTELQAA---SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF-VMAI 344
              T+L  A   S +    L   +C  + +P  ++++   + G  ++  +GMTE   + +
Sbjct: 293 PFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTV 352

Query: 345 SNPLRGARKAGTV-GNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTK 402
           + P     KA T  G PLPGV+VK+ +      + G  G + V+  S F  Y K P +  
Sbjct: 353 TEPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHL-- 410

Query: 403 DSFTADGFFKTGDTGKQDEDGYYIILGR 430
           +S  A+G+F TGD   QD +GY  I GR
Sbjct: 411 NSTDAEGWFDTGDLAFQDAEGYIRINGR 438

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  117 bits (294), Expect = 2e-28
 Identities = 87/277 (31%), Positives = 131/277 (47%), Gaps = 41/277 (14%)

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLH--------CLPL 220
            ED A + YT GTTG  KG + TH+++ A +        Y      LH         LPL
Sbjct: 205 PEDLAFLQYTGGTTGVAKGAMLTHRNMLANL--EQAKAAYGP---LLHPGKELVVTALPL 259

Query: 221 HHVHGL-FNALLAPLYAGATVEFMPKFSVRGIWQRWRE--SYPVNGNRAGEAITAFTGVP 277
           +H+  L  N LL  +  G     +   + R I    +E   YP          TA TGV 
Sbjct: 260 YHIFALTVNCLLF-IELGGQNLLIT--NPRDIPGFVKELKKYPF---------TAITGVN 307

Query: 278 TMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGM 337
           T++  L+   E    EL  +S      L+L + G  A+   V ++W  +TG  LLE YG+
Sbjct: 308 TLFNALLNNEEF--QELDFSS------LKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGL 359

Query: 338 TEFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEY 394
           TE    +S NP      +G++G P+P  ++K+ +D+ G++      GE+ VK P +   Y
Sbjct: 360 TECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDD-GNEVPPGEPGELWVKGPQVMLGY 418

Query: 395 WKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
           W+ P+ T +    DG+  TGD    DE+G+  I+ RK
Sbjct: 419 WQRPEATDEVIK-DGWLATGDIAVMDEEGFLRIVDRK 454

Length = 560

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score =  118 bits (297), Expect = 2e-28
 Identities = 83/285 (29%), Positives = 127/285 (44%), Gaps = 50/285 (17%)

Query: 170  EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
            +D A I+++SG+ G+PKGV+ +H +I + ++ +++ +   + D  L  LP  H  GL   
Sbjct: 782  DDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVT 841

Query: 230  LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI-----TAFTGVPT---MYT 281
            L  PL  G  V + P               P +     + +     T   G PT   +Y 
Sbjct: 842  LWLPLLEGIKVVYHPD--------------PTDALGIAKLVAKHRATILLGTPTFLRLYL 887

Query: 282  RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF- 340
            R  +        L  AS      LRL++ G+  L   V   +E   G R+LE YG TE  
Sbjct: 888  RNKKL-----HPLMFAS------LRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETS 936

Query: 341  -VMAISNP--------LRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGE---ICVKSP 388
             V +++ P         +   K G+VG PLPGV V+I + E+  +    GE   I +  P
Sbjct: 937  PVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELP-PGEDGLILIGGP 995

Query: 389  SLFKEYWKLPKVTKD---SFTADGFFKTGDTGKQDEDGYYIILGR 430
             + K Y   P+ T +        G++ TGD G  DEDG+  I  R
Sbjct: 996  QVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDR 1040

Length = 1146

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  117 bits (295), Expect = 2e-28
 Identities = 90/304 (29%), Positives = 129/304 (42%), Gaps = 57/304 (18%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           ED A I YTSGTTG PKGVV TH ++ A V   + + ++  +D  +  LPL H++   N 
Sbjct: 221 EDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQ 280

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
           ++  L+ G  V F  +     +        P          T F  VP +Y R+   Y+ 
Sbjct: 281 IVM-LHYGVAVGFY-QGDNLKLMDDLAALRP----------TIFCSVPRLYNRI---YDG 325

Query: 290 MDTELQAAS---------ASAAKQ----------------------------LRLMMCGS 312
           +   ++ +          A  AK+                            +R M  G+
Sbjct: 326 ITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGA 385

Query: 313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIA--- 369
           S L   VM+      G R+LE YGMTE    IS    G   +G VG+P P  +VK+    
Sbjct: 386 SPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVP 445

Query: 370 EDESGSDAAGV--GEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYII 427
           E    S+      GEICV+ P +FK Y+K    T++    DG+  TGD G     G   I
Sbjct: 446 EMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKI 505

Query: 428 LGRK 431
           + RK
Sbjct: 506 IDRK 509

Length = 651

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score =  116 bits (291), Expect = 5e-28
 Identities = 79/287 (27%), Positives = 115/287 (40%), Gaps = 49/287 (17%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +D  LI +TSGTTG+PKGV  +H ++  Q         Y   D +LH  PL H+ GL +A
Sbjct: 172 DDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA 231

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
           L A L  GA    +PKF  +   Q  ++            +T+   VP M   LI     
Sbjct: 232 L-AMLMVGACHVLLPKFDAKAALQAIKQ----------HNVTSMITVPAMMADLI----- 275

Query: 290 MDTELQAASASAA--KQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTE------- 339
               L   S +      +R ++ G  +L   ++    +     +L   YGMTE       
Sbjct: 276 ---SLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTF 332

Query: 340 ---------------FVMAISNPLRGARKAGT-VGNPLPGVQVKIAEDESGSDAAGVGEI 383
                            +  +      +  G  VG P P V++KI  DES      VG I
Sbjct: 333 MTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSR----VGRI 388

Query: 384 CVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
             + P +   YW     T    + DG+  TGD G  D+ G   ++GR
Sbjct: 389 LTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGR 435

Length = 563

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  115 bits (290), Expect = 7e-28
 Identities = 106/440 (24%), Positives = 178/440 (40%), Gaps = 65/440 (14%)

Query: 14  ARDSVAIRADQ-KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72
             D +A+  +   SY+Y  L  +A R+++ L +  ++                  G R+ 
Sbjct: 36  MPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEP-----------------GDRVA 78

Query: 73  IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV---- 128
                  EF    L     G ++VPL  S+ E+EL+ V++     M  +   +++     
Sbjct: 79  FQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVD 138

Query: 129 ----LQN-VASKSGAKF--SLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGT 181
               LQN +           L P   ++S    + D           G++ A +++TSGT
Sbjct: 139 LILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGT 198

Query: 182 TGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV- 240
            G PKGV+ TH +I A  +        T  D F+   PL H  G  + + AP   GA   
Sbjct: 199 EGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSV 258

Query: 241 ---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
               F P   +  +             +  +  T   G       L+   E    +L A 
Sbjct: 259 LLDIFTPDACLALL------------EQ--QRCTCMLGATPFIYDLLNLLEKQPADLSA- 303

Query: 298 SASAAKQLRLMMCGSSALPLPVMQQ-WETITGHRLLERYGMTE----FVMAISNPLRGAR 352
                  LR  +CG + +P  V ++  +   G +LL  YG TE     V+ + +PL  +R
Sbjct: 304 -------LRFFLCGGTTIPKKVARECQQR--GIKLLSVYGSTESSPHAVVNLDDPL--SR 352

Query: 353 KAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGFF 411
              T G    GV++K+ ++   +   G  GE   + P++F  Y   P++T  +   +G++
Sbjct: 353 FMHTDGYAAAGVEIKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWY 412

Query: 412 KTGDTGKQDEDGYYIILGRK 431
            +GD  + DE GY  I GRK
Sbjct: 413 YSGDLCRMDEAGYIKITGRK 432

Length = 547

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score =  113 bits (285), Expect = 2e-27
 Identities = 103/451 (22%), Positives = 180/451 (39%), Gaps = 80/451 (17%)

Query: 15  RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
            D+ A+    ++ +Y  L+   L ++S L    L                   G R+ I 
Sbjct: 14  PDATALVHHDRTLTYAALSERVLALASGLRGLGLAR-----------------GERVAIY 56

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
                E V  + G   +G + VP+       ++ H++ D ++ +++++ +  ++L     
Sbjct: 57  LDKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALP 116

Query: 135 K-----------SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRG-----EDPALIVYT 178
                         A  S   P    +S    + +  A   D          D A I+YT
Sbjct: 117 GCHDLRTLIIVGDPAHASEGHPGEEPAS----WPKLLA-LGDADPPHPVIDSDMAAILYT 171

Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           SG+TG+PKGVV +H+++ A  Q +    E    D+ L  LPL   +G FN L    Y GA
Sbjct: 172 SGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYG-FNQLTTAFYVGA 230

Query: 239 TV----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL 294
           TV      +P+  ++ + +                IT    VP ++ +L Q    +D   
Sbjct: 231 TVVLHDYLLPRDVLKALEK--------------HGITGLAAVPPLWAQLAQ----LDWPE 272

Query: 295 QAASASAAKQLRLMMCGSSALPLPVMQQWET-ITGHRLLERYGMTE-FVMAISNPLRGAR 352
                SAA  LR +     A+P   + +  + +   RL   YG+TE F      P    R
Sbjct: 273 -----SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDR 327

Query: 353 KAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFF 411
           +  ++G  +P  +V +  ++    A G  GE+  +   +   YW  P+ T + F     F
Sbjct: 328 RPDSIGKAIPNAEVLVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPF 387

Query: 412 K-----------TGDTGKQDEDGYYIILGRK 431
                       +GDT ++DE+G+   +GR+
Sbjct: 388 PGELHLPELAVWSGDTVRRDEEGFLYFVGRR 418

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score =  113 bits (284), Expect = 4e-27
 Identities = 107/447 (23%), Positives = 179/447 (40%), Gaps = 87/447 (19%)

Query: 13  MARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72
              D   +      ++Y + A +A   +  L +  +K      + +  A++   CG RI 
Sbjct: 33  RYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVK------RGDRVALM---CGNRI- 82

Query: 73  IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV 132
                  EF+   LG  + G IAVP+  +    +L H++ +S   +++        L+  
Sbjct: 83  -------EFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAA 135

Query: 133 -----------------ASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALI 175
                            +    A +S  P  P  +                 +  D A I
Sbjct: 136 DPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAA----------AVQPGDTAAI 185

Query: 176 VYTSGTTGKPKGVVHTHKSIDAQV----QMLTEAWEYTSADQFLHCLPLHHVHGLFNALL 231
           +YTSGTTG  KGV   H    AQ     +   E  E  + D     LPL H + L NA  
Sbjct: 186 LYTSGTTGPSKGVCCPH----AQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNAL-NAFF 240

Query: 232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD 291
             L AGAT    P+FS  G W   R        R G  +T   G             AM 
Sbjct: 241 QALLAGATYVLEPRFSASGFWPAVR--------RHGATVTYLLG-------------AMV 279

Query: 292 TELQAASASAA-KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE--FVMAISNPL 348
           + L +  A  + +  R+ +     +P  +   +    G  LL+ YG TE  FV+A++   
Sbjct: 280 SILLSQPARESDRAHRVRVALGPGVPAALHAAFRERFGVDLLDGYGSTETNFVIAVT--- 336

Query: 349 RGARKAGTVGNPLPGVQVKIAEDESGSD--AAGVGEICVKS--PSLFKE-YWKLPKVTKD 403
            G+++ G++G   PG + ++  DE   +      GE+ +++  P  F   Y+ +P+ T +
Sbjct: 337 HGSQRPGSMGRLAPGFEARVV-DEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVE 395

Query: 404 SFTADGFFKTGDTGKQDEDGYYIILGR 430
           ++  + +F TGD   +D DG++  + R
Sbjct: 396 AWR-NLWFHTGDRVVRDADGWFRFVDR 421

Length = 542

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score =  112 bits (283), Expect = 4e-27
 Identities = 97/441 (21%), Positives = 164/441 (37%), Gaps = 89/441 (20%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D++A+    +S +Y +L   A R++  L +  +                   G  + ++ 
Sbjct: 2   DAIALVYGDRSLTYAELNERANRLARRLRARGVGP-----------------GDVVALLL 44

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL------ 129
           + S E V  +L    +G   VPL  +YP   L  ++ DS   ++L+ E    +       
Sbjct: 45  ERSPELVVAILAILKAGAAYVPLDPAYPAERLAFMLEDSGARVLLTDESLAPLARADQLP 104

Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
             +  +        PP P V                    +D A ++YTSG+TG+PKGV 
Sbjct: 105 LVILEEELDAEDAGPPAPAVD------------------ADDLAYVMYTSGSTGRPKGVA 146

Query: 190 HTHKSIDAQVQMLTEA--WEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFM 243
             H+ +   V+++           D+FL   PL      F+A    +   L  G  +  +
Sbjct: 147 VPHRGV---VRLVRNTNYIALDPDDRFLQLSPLS-----FDASTFEIWGALLNGGRLVLI 198

Query: 244 PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY--TRLIQGYEAMDTELQAASASA 301
            K               ++ +R    I    GV  ++    L         +L      A
Sbjct: 199 DK------------ETLLDPDRLARLIAEQ-GVTVLWLTAALFN-------QLVDEDPEA 238

Query: 302 AKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTE-FVMAISNPLRGARKAGT--- 356
              LR ++ G   L    +++      G RL+  YG TE    +  + +    +A     
Sbjct: 239 LAGLRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGPTENTTFSTCHVITRLDEAADSIP 298

Query: 357 VGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGF----- 410
           +G P+P   V I ++E      GV GE+ V    L   Y   P++T + F  D F     
Sbjct: 299 IGRPIPNTTVYILDEEGQPVPIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGER 358

Query: 411 -FKTGDTGKQDEDGYYIILGR 430
            ++TGD  +   DG    LGR
Sbjct: 359 LYRTGDLARWRPDGNIEFLGR 379

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  112 bits (281), Expect = 1e-26
 Identities = 79/278 (28%), Positives = 128/278 (46%), Gaps = 37/278 (13%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ----------FLHCLP 219
           +D A++ YT GTTG  KG + TH ++ A +  +         D            +  LP
Sbjct: 207 DDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLP 266

Query: 220 LHHVHGL-FNALLAPLYAGATVEFMPKFSVRGI---WQRWRESYPVNGNRAGEAITAFTG 275
           L+H++    N +   +     V       + G      +WR              +A  G
Sbjct: 267 LYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWR-------------FSALLG 313

Query: 276 VPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERY 335
           + T++  L+      D +  A        L+L   G +AL     ++WE +TG  ++E Y
Sbjct: 314 LNTLFVALMDHPGFKDLDFSA--------LKLTNSGGTALVKATAERWEQLTGCTIVEGY 365

Query: 336 GMTEFV-MAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKE 393
           G+TE   +A +NP     + GTVG P+PG  +K+ +D+      G  GE+C+K P + K 
Sbjct: 366 GLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPLGERGELCIKGPQVMKG 425

Query: 394 YWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
           YW+ P+ T ++  A+G+FKTGD    D DG+  I+ RK
Sbjct: 426 YWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRK 463

Length = 562

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score =  111 bits (278), Expect = 1e-26
 Identities = 103/436 (23%), Positives = 175/436 (40%), Gaps = 56/436 (12%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           M + K   K  S+  + +AI+ + +  +Y     S  ++++ L         +++KN+  
Sbjct: 1   MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWL-------NEKESKNK-- 51

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                     I I+ +   EF+    G   +G   VPL + + + EL   +  S+  M++
Sbjct: 52  ---------TIAILLENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIV 102

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSG 180
            TE Y+  L ++  + G    +      +      +    A   + Q    P  + +TSG
Sbjct: 103 -TERYK--LNDLPDEEGRVIEIDEWKRMIEKYLPTY----APIENVQ--NAPFYMGFTSG 153

Query: 181 TTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240
           +TGKPK  +   +S           +     D  L    L H   L+ A+   LY G TV
Sbjct: 154 STGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAIST-LYVGQTV 212

Query: 241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS 300
             M KF    +  +             E I+    VPTM   L +    ++ +++  S S
Sbjct: 213 HLMRKFIPNQVLDKLE----------TENISVMYTVPTMLESLYKENRVIENKMKIIS-S 261

Query: 301 AAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTE--FVMAISNPLRGARKAGTV 357
            AK                 ++ + I  + +L E YG +E  FV A+       R+  +V
Sbjct: 262 GAK-----------WEAEAKEKIKNIFPYAKLYEFYGASELSFVTALV-DEESERRPNSV 309

Query: 358 GNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDT 416
           G P   VQV+I  +       G +G + VKSP  F  Y  +  V      ADG+    D 
Sbjct: 310 GRPFHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGY-IIGGVLARELNADGWMTVRDV 368

Query: 417 GKQDEDGYYIILGRKG 432
           G +DE+G+  I+GR+ 
Sbjct: 369 GYEDEEGFIYIVGREK 384

Length = 487

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score =  109 bits (276), Expect = 3e-26
 Identities = 100/438 (22%), Positives = 164/438 (37%), Gaps = 80/438 (18%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D+ A+     + +Y +LA  A  I++ L                        G  + +V 
Sbjct: 2   DATAVIDGAGTLTYGELARRANAIAAAL-------------RAAGV----APGDLVAVVM 44

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
              +E +  VLG   +G   VP+    P      ++  +    VL+     +        
Sbjct: 45  PKGWEQIVAVLGILLAGAAYVPIDPDQPAERRAAILARAGARAVLTDPGLAQ-------- 96

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRG----EDPALIVYTSGTTGKPKGVVHT 191
                    P           D + AE           +D A +++TSG+TG+PKGV+ T
Sbjct: 97  ---------PEEAPDLLVVADDAAAAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMIT 147

Query: 192 HKSIDAQVQMLTEAWEYTSADQFLHCLPLHH---VHGLFNALLAPLYAGATVEFMPKFSV 248
           H++    +  +   +    AD+ L    LH    V+ +F AL     AGA +    +   
Sbjct: 148 HRAAVNTILDVNRRFGVGPADRVLALSALHFDLSVYDIFGALS----AGAALVLPDEARR 203

Query: 249 RGI--WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA--SASAAKQ 304
           R    W    + + V         T +  VP +          MD  L  A  +A     
Sbjct: 204 RDPDHWAELVQRHGV---------TVWNSVPAL----------MDMLLTYAEDAARLLPS 244

Query: 305 LRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEF-VMAISNPLRGA-RKAGTV--GN 359
           LRL+M     +PL + ++      G RL+   G TE  + +I  P+        ++  G 
Sbjct: 245 LRLVMLSGDWIPLDLPRRLRALAPGARLVSLGGATEASIWSIYYPIDDVDPDWRSIPYGK 304

Query: 360 PLPGVQVKIAEDESGSDAA-GV-GEICVKSPSLFKEYWKLPKVTKDSF----TADGFFKT 413
           PLP  +  +  DE G D    V GE+ +    +   YW  P++T + F    T +  ++T
Sbjct: 305 PLPNQKFYVL-DEDGRDCPDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLYRT 363

Query: 414 GDTGKQDEDGYYIILGRK 431
           GD G+   DG    LGR 
Sbjct: 364 GDLGRYRPDGTIEFLGRA 381

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score =  110 bits (276), Expect = 1e-25
 Identities = 107/445 (24%), Positives = 170/445 (38%), Gaps = 84/445 (18%)

Query: 13   MARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCG--AR 70
            M  D+VA+  D++  +Y +L   A R++  L                   +A G G    
Sbjct: 4563 MTPDAVAVVFDEEKLTYAELNRRANRLAHAL-------------------IARGVGPEVL 4603

Query: 71   IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ 130
            +GI  + S E + G+L    +G   VPL   YP   L ++M DS  +++L+      +LQ
Sbjct: 4604 VGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLT---QSHLLQ 4660

Query: 131  NVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPAL---------IVYTSGT 181
             +    G   SL                 + E  +G    DPA+         ++YTSG+
Sbjct: 4661 RLPIPDGLA-SL--------------ALDRDEDWEGFPAHDPAVRLHPDNLAYVIYTSGS 4705

Query: 182  TGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241
            TG+PKGV  +H S+   +    E +E T  D+ L  +      G    L  PL  GA+V 
Sbjct: 4706 TGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSF-SFDGSHEGLYHPLINGASVV 4764

Query: 242  FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301
                     +W   R    ++ +R    +T     P    +L +  E  D E  +     
Sbjct: 4765 IRDD----SLWDPERLYAEIHEHR----VTVLVFPPVYLQQLAEHAER-DGEPPS----- 4810

Query: 302  AKQLRLMMCGSSALPLPVMQQ-WETITGHRLLERYGMTEFVMAISNPLRGARKAGT---- 356
               LR+   G  A+        W  +    L   YG TE  + +   L  AR        
Sbjct: 4811 ---LRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVL--LWKARDGDACGAA 4865

Query: 357  ---VGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGF-- 410
               +G PL      + + +      GV GE+ +    + + Y + P +T + F  D F  
Sbjct: 4866 YMPIGTPLGNRSGYVLDGQLNPLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGA 4925

Query: 411  -----FKTGDTGKQDEDGYYIILGR 430
                 ++TGD  +   DG    LGR
Sbjct: 4926 PGGRLYRTGDLARYRADGVIDYLGR 4950

Length = 5163

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score =  108 bits (272), Expect = 2e-25
 Identities = 71/268 (26%), Positives = 122/268 (45%), Gaps = 52/268 (19%)

Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD--QFLHCLPLHHVHG---LF 227
           A  ++TSG+TG PK V++TH+ + A   M+ + W + + +    +  LP +H  G    F
Sbjct: 167 AKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFGGNHNF 226

Query: 228 NALLA---PLY--AGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
           N +L     LY   G  V  + + ++R +    RE  P          T +  VP     
Sbjct: 227 NMVLYNGGTLYIDDGKPVPGLFEETLRNL----REVSP----------TVYFNVP----- 267

Query: 283 LIQGYEAMDTELQAASASAA---KQLRLMMCGSSALPLPVMQQWETI-------TGHR-- 330
             +G+E +   L+  +A      K+LRL+    +ALP  V   W+ +       TG R  
Sbjct: 268 --KGFEMLVDALERDAALRRRFFKRLRLLFYAGAALPQDV---WDRLQALAVRTTGERIP 322

Query: 331 LLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSL 390
           +    G TE     +       ++G +G P PG ++K+          G  E+ VK P++
Sbjct: 323 MTSGLGATETAPTATFVHWPTDRSGVIGLPAPGTELKLVP------NGGKLEVRVKGPNV 376

Query: 391 FKEYWKLPKVTKDSFTADGFFKTGDTGK 418
              YW+ P++T ++F  +GF++ GD  +
Sbjct: 377 TPGYWRDPELTAEAFDEEGFYRIGDAVR 404

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  108 bits (270), Expect = 2e-25
 Identities = 82/280 (29%), Positives = 136/280 (48%), Gaps = 41/280 (14%)

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT--EA--WEYTSADQ-FLHCLPLHH 222
           + +D A I+Y+SGTTG  KGVV TH+++ A V++    EA  +EY  +D  +L  LP+ H
Sbjct: 196 KQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFH 255

Query: 223 VHGLFNALLAPLYAGATVEFMPKFS----VRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278
           ++GL   ++  L  G+T+  M +F     V+ I  R++             +T F  VP 
Sbjct: 256 IYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVI-DRFK-------------VTHFPVVPP 301

Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGM 337
           +   L +       + +       K L+ + CG++ L    +Q + +T+     ++ YGM
Sbjct: 302 ILMALTK-------KAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGM 354

Query: 338 TEFVMAISNPLRG-----ARKAGTVGNPLPGVQVKIAEDESGS--DAAGVGEICVKSPSL 390
           TE   + +   RG       K  +VG   P +Q K+ +  +G        GE+ ++ P +
Sbjct: 355 TE---STAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGV 411

Query: 391 FKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
            K Y   PK T+ +   DG+ +TGD    DEDGY  I+ R
Sbjct: 412 MKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDR 451

Length = 560

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score =  107 bits (270), Expect = 3e-25
 Identities = 90/404 (22%), Positives = 153/404 (37%), Gaps = 92/404 (22%)

Query: 88  TWFSGC-----IAVPLAL--SYPES--ELLHVMHDSDISMVLSTEDYREVLQNVASKSG- 137
           T F  C     + VP+A+  +Y E    +  + +      +        +L + A  +  
Sbjct: 79  TAFWACVLGGFVPVPVAVPPTYDEPNAAVAKLRN------IWELLGSPVILTDAALVAAL 132

Query: 138 ---AKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
                 + +  +  V +   +        +   R +DPAL++ TSG+TG PK VV TH++
Sbjct: 133 AGLRTRAGLEALR-VLAIEELRSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRN 191

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG----------------- 237
           I A+     +   +T  D  L+ +PL HV G+    L  +Y G                 
Sbjct: 192 ILARSAGTVQVNGFTPDDVSLNWMPLDHVGGIVMLHLRDVYLGCQQIHVPTDYILADPLR 251

Query: 238 ---------ATVEFMPKFSV--------RGIWQRWRES---YPVNGNRAGEAITAFTGVP 277
                     T+ + P F+         R   + W  S   Y +N    GEA+ A T   
Sbjct: 252 WLDLIDRYRVTITWAPNFAFALLNDALERIEDRSWDLSSLRYIINA---GEAVVAKTIRR 308

Query: 278 TMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGM 337
            +   L+  Y      ++ A           M  + +           +T  R       
Sbjct: 309 FL--ELLAPYGLPADAIRPAFG---------MSETCS----------GVTYSRGFRTGPD 347

Query: 338 TEFVMAISNPLRGARKAGT---------VGNPLPGVQVKIAEDESGSDAAG-VGEICVKS 387
           T  V+  S        A           +G P+PGV ++I +++      G VG + V+ 
Sbjct: 348 TGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVDEDGALLPEGEVGRLQVRG 407

Query: 388 PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
           P++   Y++ P+   ++FT DG+F+TGD G    DG   I GR+
Sbjct: 408 PTVTSGYYRNPEANAEAFTEDGWFRTGDLGFLH-DGRLTITGRE 450

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  106 bits (267), Expect = 3e-25
 Identities = 82/276 (29%), Positives = 118/276 (42%), Gaps = 35/276 (12%)

Query: 165 DGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCL--PLHH 222
           D  R +DP L+ +TSGTTG PK V+HTH S      + T  W           +  P   
Sbjct: 79  DETRADDPILLYFTSGTTGLPKLVLHTHVSYPVG-HLSTMYWIGLQPGDIHLNISSPGWA 137

Query: 223 VHGLFNALLAPLYAGATVEFM--PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY 280
            H  +++  AP  AGATV  +  P+F  R       +            +T F   PT++
Sbjct: 138 KHA-WSSFFAPWNAGATVFGINYPRFDARRYLGALEKF----------GVTTFCAPPTVW 186

Query: 281 TRLIQ-GYEAMDTELQAASASAAKQLRLMMCGSSALPLP-VMQQWETITGHRLLERYGMT 338
              IQ      D  L+ A  SA + L            P V+++ +   G  + + YG T
Sbjct: 187 RMFIQQDLAQYDVRLREA-VSAGEPLN-----------PEVIERVKKAWGLTIRDGYGQT 234

Query: 339 EFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVK----SPSLFKEY 394
           E    I N      K G++G PLPG +V + +DE        GEI +        L   Y
Sbjct: 235 ETTAMIGNSPGQKVKPGSMGRPLPGYRVVLLDDEGKEIPVTEGEIALDLGDRPIGLMLGY 294

Query: 395 WKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
              P+ T  +F   G+++TGD   +DEDGY   +GR
Sbjct: 295 MGDPEKTAAAF-RGGYYRTGDKAYRDEDGYLWFVGR 329

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score =  106 bits (267), Expect = 3e-25
 Identities = 103/415 (24%), Positives = 160/415 (38%), Gaps = 85/415 (20%)

Query: 27  YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
           YSY +L   + R +++L S                 L  G G R+  +   S E     L
Sbjct: 1   YSYQELKELSARFANVLAS-----------------LGVGKGERVFTLLPRSPELYVAAL 43

Query: 87  GTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPV 146
           GT   G +  PL  ++    +   +   +  ++++T                        
Sbjct: 44  GTLKLGAVYGPLFSAFGPEPIRDRLELGEAKVLITTP----------------------- 80

Query: 147 PNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW 206
                          E+ D    EDPAL+ +TSGTTGKPKGV+H H+++ A         
Sbjct: 81  ------------ELYERTDP---EDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVL 125

Query: 207 EYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT-VEFMPKFSVRGIWQRWRESYPVNGNR 265
           +    D +        V G    ++APL  G T V    +F       RW          
Sbjct: 126 DLRPDDVYWCTADPGWVTGTSYGIIAPLLNGVTLVVDEGEFDAE----RWYGIL------ 175

Query: 266 AGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL-PVMQQW- 323
             E +T +   PT    L      M    + A+      LR +   S   PL P +  W 
Sbjct: 176 EEEKVTVWYTAPTALRML------MRAGPELAARYDLSSLRHIA--SVGEPLNPEVVVWG 227

Query: 324 ETITGHRLLERYGMTEF-VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGS-----DA 377
           E + G  + + +  TE   + I+N      K G++G PLPG++  + E +          
Sbjct: 228 EKVLGMPIHDTWWQTETGAIMIANYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGP 287

Query: 378 AGVGEICVKS--PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
             VGE+ +K   PS+F+ Y    +    SF  DG++ TGD   +DEDGY+  +GR
Sbjct: 288 GQVGELALKPGWPSMFRGYLGNEERYASSF-VDGWYLTGDLAYRDEDGYFWFVGR 341

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score =  107 bits (268), Expect = 3e-25
 Identities = 87/377 (23%), Positives = 158/377 (41%), Gaps = 42/377 (11%)

Query: 66  GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
           G G  + ++ K S  F+       + G + +P+       E+ +++ D+   ++L  E++
Sbjct: 50  GQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEF 109

Query: 126 REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAE--KMDGQRGEDPALIVYTSGTTG 183
             ++     K       I       +++    Q   E          D   ++YTSGTT 
Sbjct: 110 DAIVALETPK-------IVIDAAAQADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTD 162

Query: 184 KPKGVVHTH-----KSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           +PKGV+H++     KSID        A   T++++ L   PL+HV       +A L+ G 
Sbjct: 163 RPKGVMHSYGNLHWKSIDH-----VIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGG 217

Query: 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS 298
           T+    +F          +   V        +T     P M +R++   +    +L +  
Sbjct: 218 TLRIHREF----------DPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDS-- 265

Query: 299 ASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEFVMA--ISNPLRGARKAG 355
                 L   + G    P   ++ +    T  R ++ YG+TE      +    R   K G
Sbjct: 266 ------LAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIG 319

Query: 356 TVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTG 414
           + G  L  V+++IA+         + GEIC++ P + K YWK P+ T ++F    +F++G
Sbjct: 320 STGRALAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFY-GDWFRSG 378

Query: 415 DTGKQDEDGYYIILGRK 431
           D G  DE+G+  +  RK
Sbjct: 379 DVGYLDEEGFLYLTDRK 395

Length = 497

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score =  107 bits (270), Expect = 5e-25
 Identities = 91/287 (31%), Positives = 133/287 (46%), Gaps = 59/287 (20%)

Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
           Q+ ED ALI++TSG+ G PKGVVH+HKS+ A V+ +    ++T  D+F+  LPL H  GL
Sbjct: 362 QQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGL 421

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI-----TAFTGVPTM-- 279
              L  PL  GA V   P               P++     E +     T   G  T   
Sbjct: 422 TVGLFTPLLTGAEVFLYPS--------------PLHYRIVPELVYDRNCTVLFGTSTFLG 467

Query: 280 -YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
            Y R    Y+               +LR ++ G+  L     Q W+   G R+LE YG+T
Sbjct: 468 NYARFANPYDFA-------------RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVT 514

Query: 339 EF--VMAISNPLRGARKAGTVGNPLPGVQ---VKIAEDESGSDAAGVGEICVKSPSLFKE 393
           E   V++I+ P+  A K GTVG  LPG+    + +   E G      G + +K P++   
Sbjct: 515 ECAPVVSINVPM--AAKPGTVGRILPGMDARLLSVPGIEQG------GRLQLKGPNIMNG 566

Query: 394 YWKL--PKVTKDSFTAD--------GFFKTGDTGKQDEDGYYIILGR 430
           Y ++  P V  +  TA+        G++ TGD  + DE G+  I GR
Sbjct: 567 YLRVEKPGVL-EVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGR 612

Length = 718

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score =  105 bits (265), Expect = 1e-24
 Identities = 108/416 (25%), Positives = 171/416 (41%), Gaps = 66/416 (15%)

Query: 47  DLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESE 106
           DLK  S K  N   A L  G G  + +  K  +EF   +L     G IA+P        +
Sbjct: 52  DLKDYSNKAANFFKA-LGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTAKD 110

Query: 107 LLHVMHDSDISMVLSTED--YREVLQNVASKSGAKFSLI---PPVPN--------VSSET 153
           +++ +  + I M++   +    E +   A + G+   L+    PVP         + + +
Sbjct: 111 IVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPTLLVLVGDPVPEGWIDFDKEIENAS 170

Query: 154 TVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ 213
             F++      D    +D  L+ +TSGTTG PK V H H                 +A +
Sbjct: 171 PDFERPTGN--DATCNDDILLVYFTSGTTGMPKMVEHDH---------TYPLGHIVTA-K 218

Query: 214 FLHCLPLHHVH------GLFNALLAPLY----AGATVEF---MPKFSVRGIWQRWRESYP 260
           +   +    +H      G   A+   LY    AGA V F     KF  + + ++  E Y 
Sbjct: 219 YWQNVKEGGLHLTVADTGWGKAVWGKLYGQWIAGAAV-FVYDYDKFDPKNLLEKI-EKY- 275

Query: 261 VNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM 320
                    +T F   PT+Y  LI+     D      S+     LR        L   V 
Sbjct: 276 --------GVTTFCAPPTIYRFLIK----EDLSKYDLSS-----LRYCTTAGEPLNPEVF 318

Query: 321 QQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG- 379
             ++  TG +L+E +G TE  + I+       K G++G P PG  + I + +  S   G 
Sbjct: 319 NTFKEKTGIKLMEGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDIIDPDGKSCEVGE 378

Query: 380 VGEICVKSPS-----LFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
            GEI +++       LF  Y++ P+ T + +  DG++ TGDT   DEDGY   +GR
Sbjct: 379 EGEIVIRTSDGKPLGLFMGYYRDPERTAEVWH-DGYYHTGDTAWMDEDGYLWFVGR 433

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score =  105 bits (264), Expect = 2e-24
 Identities = 98/398 (24%), Positives = 156/398 (39%), Gaps = 102/398 (25%)

Query: 81  FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKF 140
           F A +LG    G I VPL+                     +T++++  L  V +     F
Sbjct: 57  FWACILG----GIIPVPLS-------------------YGNTDEHKLKLLRVWNILNNPF 93

Query: 141 SLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ 200
            LI             D+     +     +D A I ++SG+TG+PKGV+ THK++   ++
Sbjct: 94  -LI------------TDRDSLLSLP----DDIAFIQFSSGSTGEPKGVILTHKNLLTNIE 136

Query: 201 MLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP--KFSVRGI-WQRWRE 257
            + EA E TS D FL  +PL H  GL    L P   G     MP   F  R + W     
Sbjct: 137 AIIEAAEITSEDVFLSWMPLTHDMGLIGFHLTPTALGINQYLMPTRLFIRRPLLWL---- 192

Query: 258 SYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA---SASAAKQLRLMMCGSSA 314
               + +RA          P    + +   +   TE       S+     +RL+  G+  
Sbjct: 193 -DKASQHRA-----TILSSPNFGYKYL--LKHFKTEKIIDWDLSS-----VRLIFNGAEP 239

Query: 315 LPLPVMQQW-ETITGHRLLER-----YGMTEFVMAISNPL-------------------- 348
           +   + +++ E +    L        YG+ E  +A+S P                     
Sbjct: 240 ISADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVK 299

Query: 349 -----RGARKAGT---VGNPLPGVQVKIAEDESGSDAAG--VGEICVKSPSLFKEYWKLP 398
                     A +   VG+P+ G +++I  D++G       +G I +K  ++   Y+  P
Sbjct: 300 IIEIDPKNSDAISFVEVGSPIDGCEIRIV-DDAGEVLPDRTIGHIQIKGDNVTSGYYNNP 358

Query: 399 KVTKDSFTADGFFKTGDTGKQDEDGYYIILGR-KGIYF 435
           + TK S T DG+ KTGD G    +G  +I GR K I  
Sbjct: 359 EATKKSITPDGWLKTGDLGFL-RNGRLVITGRAKDIII 395

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  104 bits (261), Expect = 2e-24
 Identities = 108/420 (25%), Positives = 172/420 (40%), Gaps = 94/420 (22%)

Query: 27  YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL 86
            SY +L   + R+++LL                 A L    G R+  +   + E V  +L
Sbjct: 1   LSYAELREQSARVANLL-----------------ADLGVKPGDRVAGLLPRTPELVVAIL 43

Query: 87  GTWFSGCIAVPLALSY-PESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPP 145
            TW  G I VPL  ++ P++          I   L     + V+ N A++          
Sbjct: 44  ATWRVGAIYVPLFTAFGPKA----------IEYRLGHSGAKVVVTNAANRG--------- 84

Query: 146 VPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA 205
                            K+D    +D    +YTSGTTG PKGV     ++ A    +  A
Sbjct: 85  -----------------KLD----DDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYA 123

Query: 206 WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQ---RWRESYPV 261
            +    D F +       +GL+ A+  PL  G T  F+   F+    +    R       
Sbjct: 124 IDLRDDDVFWNIADPGWAYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLG----- 178

Query: 262 NGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL--PV 319
                   +T F G PT Y  L+            A A+A  +L+L +  S+  PL   V
Sbjct: 179 --------VTNFAGSPTAYRMLMA---------AGADAAARIKLKLRVASSAGEPLNPEV 221

Query: 320 MQQWETITGHRLLERYGMTEFVMAISN--PLRGARKAGTVGNPLPGVQVKIAEDESGSDA 377
           ++ ++   G  + + YG TE  M + N   L    +AG++G PLPG ++ + +D+    A
Sbjct: 222 VRWFQANLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLPLPGYRIAVLDDDGQPLA 281

Query: 378 AGV-GEICV---KSPSL-FKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKG 432
            G  G++ +    SP L F  YW  P+ T +   A  ++ TGD  ++DEDGY+  +GR  
Sbjct: 282 DGEPGQLAIDVASSPLLWFSGYWDDPEKTAELI-AGRWYVTGDLVERDEDGYFWFIGRAD 340

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score =  105 bits (264), Expect = 3e-24
 Identities = 69/284 (24%), Positives = 122/284 (42%), Gaps = 60/284 (21%)

Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ--FLHCL 218
                    +  A  ++TSG+TG PK V++TH+ + A  QML + + + + +    +  L
Sbjct: 200 DAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWL 259

Query: 219 PLHHVHG---LFNALLA---PLY--AGA-TVEFMPKFSVRGIWQRWRESYPVNGNRAGEA 269
           P +H  G       +L     LY   G  T     + ++R +    RE  P         
Sbjct: 260 PWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDE-TLRNL----REISP--------- 305

Query: 270 ITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK---QLRLMMCGSSALPLPVMQQWETI 326
            T +  VP        G+E +   L+  +A   +   +L+L+    +AL   V   W+ +
Sbjct: 306 -TVYFNVPK-------GWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDV---WDRL 354

Query: 327 -------TGHR--LLERYGMTE---FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESG 374
                   G R  ++   GMTE        + P     +AG +G P PG +VK+      
Sbjct: 355 DRVAEATCGERIRMMTGLGMTETAPSATFTTGP---LSRAGNIGLPAPGCEVKLV----- 406

Query: 375 SDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGK 418
               G  E+ VK P++   YW+ P++T ++F  +G++++GD  +
Sbjct: 407 -PVGGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVR 449

Length = 614

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  103 bits (260), Expect = 4e-24
 Identities = 72/303 (23%), Positives = 114/303 (37%), Gaps = 72/303 (23%)

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
           + +DPA I++TSG+TG PKGVV+TH++  AQ+  L   +     D+ L   P      LF
Sbjct: 83  KADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREGDRDLAAFPP---FALF 139

Query: 228 NALL--------------APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              L              A L      + +                     R   A   F
Sbjct: 140 GPALGVTTVIPAMDPTAPAALDPAKLAQAI---------------------REIGASCVF 178

Query: 274 TGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT--GHRL 331
            G P +   + +  E    +L +        LR ++   + +P  +++++         +
Sbjct: 179 -GSPALLKNVARYCEENGIQLPS--------LRRVLSAGAPVPPDLLRRFVANLMPEAEI 229

Query: 332 LERYGMTEF----------VMAISNPLRGARKAGTVGNPLPGVQVKIAE----------D 371
              YG TE           V+A S     A     VG+P+PG+ V+I            D
Sbjct: 230 HTPYGATEALPVASIEGREVLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDD 289

Query: 372 ESGSDAAGVGEICVKSPSLFKEYWKLPKVTK--DSFTADGFF-KTGDTGKQDEDGYYIIL 428
           +       VGEI V  P + +EY+  P+ TK       +  + + GD G  D+ G     
Sbjct: 290 DIELPPGEVGEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFC 349

Query: 429 GRK 431
           GRK
Sbjct: 350 GRK 352

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score =  105 bits (263), Expect = 4e-24
 Identities = 81/276 (29%), Positives = 129/276 (46%), Gaps = 38/276 (13%)

Query: 163  KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH 222
                +  +DPA+I++TSG+ G PKGVV +H+++ A    +    +++  D+  + LP+ H
Sbjct: 786  YFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFH 845

Query: 223  VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
              GL   L+ PL +G  V   P               P++     E I   T    ++  
Sbjct: 846  SFGLTGGLVLPLLSGVKVFLYPS--------------PLHYRIIPELIYD-TNATILF-- 888

Query: 283  LIQGYEAMDTELQAASASAA----KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
                    DT L   +  A     + LR +  G+  +     Q W    G R+LE YG+T
Sbjct: 889  ------GTDTFLNGYARYAHPYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVT 942

Query: 339  EF--VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWK 396
            E   V+A++ P+    KAGTVG  LPG++ ++ E   G D  G   + V+ P++   Y +
Sbjct: 943  ETAPVIALNTPM--HNKAGTVGRLLPGIEYRL-EPVPGIDEGG--RLFVRGPNVMLGYLR 997

Query: 397  L--PKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
               P V +    ADG++ TGD    DE+G+  I GR
Sbjct: 998  AENPGVLEPP--ADGWYDTGDIVTIDEEGFITIKGR 1031

Length = 1140

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score =  105 bits (263), Expect = 5e-24
 Identities = 93/388 (23%), Positives = 155/388 (39%), Gaps = 63/388 (16%)

Query: 69   ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
              +GI  + S E V G+L    +G   VPL   YP   L +++ DS I ++L+      +
Sbjct: 1625 VLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQ---SHL 1681

Query: 129  LQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPAL---------IVYTS 179
               +    G               + V DQ     ++G    +PA+         ++YTS
Sbjct: 1682 QARLPLPDGL-------------RSLVLDQEDDW-LEGYSDSNPAVNLAPQNLAYVIYTS 1727

Query: 180  GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH---HVHGLFNALLAPLYA 236
            G+TG+PKG  + H ++  ++    EA++ ++AD  L          V  LF     PL  
Sbjct: 1728 GSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWELF----WPLIN 1783

Query: 237  GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296
            GA +   P     G  +   +   +      + +T    VP+M  +L+Q           
Sbjct: 1784 GARLVIAPP----GAHRDPEQLIQL---IERQQVTTLHFVPSMLQQLLQ---------MD 1827

Query: 297  ASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEFVMAISN-PLRGA--- 351
                    LR ++CG  AL +  ++ W E +    L   YG TE  + +++   R     
Sbjct: 1828 EQVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLE 1887

Query: 352  -RKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADG 409
             R +  +G P+  +   I +        GV GE+ +    L + Y   P +T + F AD 
Sbjct: 1888 GRDSVPIGQPIANLSTYILDASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADP 1947

Query: 410  F-------FKTGDTGKQDEDGYYIILGR 430
            F       ++TGD  +   DG    LGR
Sbjct: 1948 FGTVGSRLYRTGDLARYRADGVIEYLGR 1975

Length = 3956

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  104 bits (260), Expect = 5e-24
 Identities = 82/269 (30%), Positives = 120/269 (44%), Gaps = 29/269 (10%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-EYTSADQFLHCLPLHHVHGLFNA 229
           +P  I +TSGTTG PK   H+H S+   +++    W + T +D   +      +     +
Sbjct: 175 EPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIKAAIWS 234

Query: 230 LLAPLYAGATV--EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
           L +P   GA V    +P+F  + I Q     YP         IT F   PT+Y  L+Q  
Sbjct: 235 LFSPWIQGACVFVHHLPRFDPKVILQTL-SKYP---------ITTFCSAPTVYRMLVQ-- 282

Query: 288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP 347
                  Q  ++   K LR  + G   L   V++QW+  TG  L E YG TE  +  +N 
Sbjct: 283 -------QDLTSYKFKSLRHCVTGGEPLNPEVLEQWKAQTGLDLYEGYGQTETGLICANF 335

Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVK-SP----SLFKEYWKLPKVT 401
                K G++G   P   V+I +D       G  G+I ++  P     LF  Y   P+ T
Sbjct: 336 KGMKIKPGSMGKASPPYDVQIIDDNGNVLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKT 395

Query: 402 KDSFTADGFFKTGDTGKQDEDGYYIILGR 430
             +   D F+ TGD G  DEDGY+  +GR
Sbjct: 396 AATIRGD-FYITGDRGIMDEDGYFWFVGR 423

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score =  105 bits (262), Expect = 6e-24
 Identities = 103/448 (22%), Positives = 157/448 (35%), Gaps = 92/448 (20%)

Query: 14   ARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
            A +++A+    +  SY +L S A R++  L +                    G   R+ I
Sbjct: 2016 APEAIAVVFGDQHLSYAELDSRANRLAHRLRA-----------------RGVGPEVRVAI 2058

Query: 74   VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
             A+ SFE V  +L    +G   VPL  +YP   L +++ DS  +++L+     E L   A
Sbjct: 2059 AAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPA 2118

Query: 134  SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR--GEDPALIVYTSGTTGKPKGVVHT 191
                        V  +  +         +     +  GE+ A ++YTSG+TG PKGV  +
Sbjct: 2119 G-----------VARLPLDRDAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVS 2167

Query: 192  HKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI 251
            H ++ A  Q   E +E + AD  L  +      G       PL  GA V       +R  
Sbjct: 2168 HGALVAHCQAAGERYELSPADCELQFMSF-SFDGAHEQWFHPLLNGARV------LIRDD 2220

Query: 252  WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
                 E       R G  I  F   P    +L +          A        +R+   G
Sbjct: 2221 ELWDPEQLYDEMERHGVTILDF--PPVYLQQLAE---------HAERDGRPPAVRVYCFG 2269

Query: 312  SSALPLPVM-QQWETITGHRLLERYGMTE------------------FVMAISNPLRGAR 352
              A+P   +   WE +    L   YG TE                    + I   L G R
Sbjct: 2270 GEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRAL-GNR 2328

Query: 353  KAGTVG---NPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADG 409
            +A  +    N L                   GE+ +    L + Y   P +T + F  D 
Sbjct: 2329 RAYILDADLNLLA--------------PGMAGELYLGGEGLARGYLNRPGLTAERFVPDP 2374

Query: 410  F-------FKTGDTGKQDEDGYYIILGR 430
            F       ++TGD  +   DG    LGR
Sbjct: 2375 FSASGERLYRTGDLARYRADGVVEYLGR 2402

Length = 5163

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  103 bits (258), Expect = 6e-24
 Identities = 102/426 (23%), Positives = 164/426 (38%), Gaps = 97/426 (22%)

Query: 25  KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
            S SY QL      ++  L +  +K                    RI +    S ++V  
Sbjct: 1   DSLSYQQLWQEVDLLAEQLRALGVK--------------------RIALALDNSIDWVIA 40

Query: 85  VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST--EDYREVLQNVASKSGAKFSL 142
            L    +G + +P+   +   +  H+++D+   +++S   +    +    A+     +  
Sbjct: 41  DLACLQAGIVCIPIPHFFSAQQTQHLLNDAGADLLISDDPDAASALHTPFATLGEDLYIA 100

Query: 143 IPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML 202
           + P  N      +                 A I YTSG+TG+PKGV  +  +++   Q L
Sbjct: 101 LRPSAN---PVELP-------------AGTAKITYTSGSTGQPKGVCLSAAALETVAQSL 144

Query: 203 TEAWEYTSADQFLHCLPLHHVHGLFNA--LLAPLYAGATVEFMP----------KFSVR- 249
            EA      ++ L  LPL  +  L N   + APL  GATV  +P                
Sbjct: 145 AEAIAILEPERHLCLLPLATL--LENIAGVYAPLLMGATVILVPLAELGLSGSSGLDPAQ 202

Query: 250 --GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
                 RW+               +   VP +   L+                  + LR 
Sbjct: 203 FVAALSRWQ-------------PHSLILVPQLLMALVA--------AVEQGPLPPESLRF 241

Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTE--FVMAISNPLRGARKAGTVGNPLPGVQ 365
           +  G + +   ++Q+   + G  + E YG++E   V++++ P  GA + G+VG PLP VQ
Sbjct: 242 VAVGGARVSPSLLQRARAL-GLPVYEGYGLSECASVVSLNTP--GADRPGSVGKPLPHVQ 298

Query: 366 VKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYY 425
           V IA D         GEI V+  SL   Y   P  T      D ++ TGD G  DE+GY 
Sbjct: 299 VSIAND---------GEILVRG-SLMLGYLGEPPAT------DDWWATGDLGHLDEEGYL 342

Query: 426 IILGRK 431
            I GRK
Sbjct: 343 YINGRK 348

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score =  101 bits (253), Expect = 9e-23
 Identities = 94/387 (24%), Positives = 152/387 (39%), Gaps = 57/387 (14%)

Query: 66  GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
           G    +GI  + S E V G+L    +G   VPL   YP+  L +++ DS + ++L+    
Sbjct: 560 GPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHL 619

Query: 126 REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDP---------ALIV 176
              L               PVP     +   D+     + G  G +P         A ++
Sbjct: 620 LAQL---------------PVP-AGLRSLCLDEPADL-LCGYSGHNPEVALDPDNLAYVI 662

Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA 236
           YTSG+TG+PKGV  +H ++   V ++ E  +  + D  L              L   L +
Sbjct: 663 YTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTF-AFDLGVTELFGALAS 721

Query: 237 GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296
           GAT+  +P    R                A + +T    VP+    L          LQA
Sbjct: 722 GATLHLLPPDCARDAEAFAALM-------ADQGVTVLKIVPSHLQAL----------LQA 764

Query: 297 ASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEFVMAISN-PLRGA--- 351
           +  +  +  R ++CG  AL + ++ +      G RL+  YG TE  + +S   L      
Sbjct: 765 SRVALPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERD 824

Query: 352 RKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGF 410
                +G PL  + + I +        GV GE+ +    L + Y + P +T + F  D F
Sbjct: 825 FGNVPIGQPLANLGLYILDHYLNPVPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPF 884

Query: 411 -------FKTGDTGKQDEDGYYIILGR 430
                  ++TGD  +   DG    LGR
Sbjct: 885 GADGGRLYRTGDLARYRADGVIEYLGR 911

Length = 3956

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score =  100 bits (250), Expect = 1e-22
 Identities = 75/262 (28%), Positives = 115/262 (43%), Gaps = 39/262 (14%)

Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQM---LTEAWEYTSADQFLHCLPLHHVHG---L 226
           A  ++TSG+TG PK V++T + + A + M   L            L  +P +H  G    
Sbjct: 223 AKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNAN 282

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIW----QRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
           FN LL   + G T+       + G++    +  RE  P          T +  VP  Y  
Sbjct: 283 FNGLL---WGGGTLYIDDGKPLPGMFEETIRNLREISP----------TVYGNVPAGYAM 329

Query: 283 LIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWE----TITGHR--LLERYG 336
           L    EAM+ +  A   S  K LRLM  G + L   + ++ +      TGHR      YG
Sbjct: 330 LA---EAMEKD-DALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYG 385

Query: 337 MTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWK 396
            TE     +       + G +G PLPGV++K+A    G       E+ VK P++   Y K
Sbjct: 386 ATETAPTTTGTHWDTERVGLIGLPLPGVELKLAP--VGDKY----EVRVKGPNVTPGYHK 439

Query: 397 LPKVTKDSFTADGFFKTGDTGK 418
            P++T  +F  +GF++ GD  +
Sbjct: 440 DPELTAAAFDEEGFYRLGDAAR 461

Length = 624

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 98.4 bits (246), Expect = 4e-22
 Identities = 113/466 (24%), Positives = 181/466 (38%), Gaps = 120/466 (25%)

Query: 15  RDSVAIR----ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGAR 70
           +D VA+R    + ++ Y+Y +L   + + +++L                   L    G R
Sbjct: 58  KDKVALRYLDASRKEKYTYKELKELSNKFANVLKE-----------------LGVEKGDR 100

Query: 71  IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED-YREV- 128
           + I      E    +LG   +G I  PL  ++ E  +   + DS+  ++++T        
Sbjct: 101 VFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKP 160

Query: 129 ------LQNV-----ASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVY 177
                 L++V       + G        +   +S+   FD    E  D    ED A++ Y
Sbjct: 161 ADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQASDE--FD---IEWTDR---EDGAILHY 212

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQFLHCLPLHH------------VH 224
           TSG+TGKPKGV+H H   +A +Q   T  +           L LH             V 
Sbjct: 213 TSGSTGKPKGVLHVH---NAMLQHYQTGKY----------VLDLHEDDVYWCTADPGWVT 259

Query: 225 GLFNALLAPLYAGAT-----VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM 279
           G    + AP   GAT       F P+      W R  E Y V         T +   PT 
Sbjct: 260 GTSYGIFAPWLNGATNVIDGGRFSPER-----WYRILEDYKV---------TVWYTAPTA 305

Query: 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL--------PL-PVMQQW-ETITGH 329
              L+            A     K+  L     S+L        PL P + +W   + G 
Sbjct: 306 IRMLMG-----------AGDDLVKKYDL-----SSLRHILSVGEPLNPEVVRWGMKVFGL 349

Query: 330 RLLERYGMTEF--VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVK 386
            + + + MTE   +M I+N      K G++G PLPG++  I +D+         G + +K
Sbjct: 350 PIHDNWWMTETGGIM-IANYPAMDIKPGSMGKPLPGIEAAIVDDQGNELPPNRMGNLAIK 408

Query: 387 S--PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
              PS+ +  W  P+  +  F A  ++ +GD+   DEDGY+   GR
Sbjct: 409 KGWPSMMRGIWNNPEKYESYF-AGDWYVSGDSAYMDEDGYFWFQGR 453

Length = 570

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 97.7 bits (244), Expect = 7e-22
 Identities = 95/439 (21%), Positives = 165/439 (37%), Gaps = 85/439 (19%)

Query: 23  DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV 82
             +  +Y +L + + R++  L +  L+                  G  + I+ + + EF 
Sbjct: 8   SGEVVTYGELEARSNRLAHGLRALGLRE-----------------GDVVAILLENNPEFF 50

Query: 83  AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL 142
                   SG    P+      +E+ +++ DS   +++ +    +    +A++  A    
Sbjct: 51  EVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAG--- 107

Query: 143 IPPVPNVSSETTVFDQSQAEKMDGQRGEDPA------LIVYTSGTTGKPKGVVH--THKS 194
             P+  V +      +S  E +  Q     A       ++Y+SGTTG+PKG+        
Sbjct: 108 -VPLLLVVAGPVPGFRSYEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLD 166

Query: 195 IDA---QVQMLTEAWEYTSADQ-FLHCLPLHHVHGLFNALLAPL-------YAGATVEFM 243
            D     +  L     Y   D  +L   PL+H         APL         G TV  M
Sbjct: 167 PDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHT--------APLRFGMSALALGGTVVVM 218

Query: 244 PKFS----VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299
            KF     +  I +R+R             +T    VPTM+ R+++  E +      +S 
Sbjct: 219 EKFDAEEALALI-ERYR-------------VTHSQLVPTMFVRMLKLPEEVRARYDVSS- 263

Query: 300 SAAKQLRLMMCGSSALPLPVMQQ----WETITGHRLLERYGMTEFVM-AISNPLRGARKA 354
                LR+ +  ++  P+ V +     W  I    + E Y  +E     +          
Sbjct: 264 -----LRVAIHAAAPCPVEVKRAMIDWWGPI----IHEYYASSEGGGVTVITSEDWLAHP 314

Query: 355 GTVGNPLPGVQVKIAEDESGSD-AAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFK 412
           G+VG  + G  V+I  DE G++   G +G +  +      EY   P+ T  +    G+  
Sbjct: 315 GSVGKAVLGE-VRIL-DEDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVT 372

Query: 413 TGDTGKQDEDGYYIILGRK 431
            GD G  DEDGY  +  RK
Sbjct: 373 VGDVGYLDEDGYLYLTDRK 391

Length = 502

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 96.2 bits (240), Expect = 2e-21
 Identities = 95/450 (21%), Positives = 169/450 (37%), Gaps = 79/450 (17%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+    + Y+Y +      R++S L                 + L  G G  + ++A
Sbjct: 19  DRTAVVYGDRRYTYRETYDRCRRLASAL-----------------SKLGIGKGDVVAVLA 61

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             +   +    G   +G + VPL       ++  +++ S+  ++   +++  + +   + 
Sbjct: 62  PNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALAL 121

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGE------------DPALIVYTSGTTG 183
              K  +   +  +S      ++   E +    G+            DP  + YTSGTTG
Sbjct: 122 LSTKEIIDTEIIVISPAAEDSEEGDYEDLL-AGGDPDPLPIPPDDEWDPISLNYTSGTTG 180

Query: 184 KPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241
            PKGVV+TH+   A +  L     W       +L  LP+ H +G +    A    G T  
Sbjct: 181 NPKGVVYTHRG--AYLNALGNVIEWGMPDRPVYLWTLPMFHCNG-WCFPWAITAVGGTHV 237

Query: 242 FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301
            + K     I+    +            +T   G PT+   L    E       A     
Sbjct: 238 CLRKVDAPAIYDLIEK----------HKVTHLCGAPTVLNMLANAPE-------ADKLPL 280

Query: 302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE----FVM--------AISNPLR 349
            + +R+M  G+   P P + +     G  +   YG+TE      +        A+    R
Sbjct: 281 PRPVRVMTAGAP--PPPAVIKKMEELGFEVTHVYGLTETYGPITVCEWKPEWDALPAEER 338

Query: 350 GARKA----GTVGNPLPGVQVKIAEDESG----SDAAGVGEICVKSPSLFKEYWKLPKVT 401
              KA      VG      +V + + E+      D   +GEI ++  ++ K Y+K P+ T
Sbjct: 339 ARLKARQGVRYVGLE----EVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEAT 394

Query: 402 KDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
           +++F A G+F +GD      DGY  I  R 
Sbjct: 395 EEAF-AGGWFHSGDLAVVHPDGYIEIKDRS 423

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 96.2 bits (240), Expect = 2e-21
 Identities = 97/385 (25%), Positives = 168/385 (43%), Gaps = 48/385 (12%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G  + ++     EFV   LG    G +       Y  +E+      S   ++++   Y +
Sbjct: 75  GDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVD 134

Query: 128 VLQNVASKSGAKFSLIPPVPNVS---SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGK 184
            L+ +A   G     I   P      SE T  D+++  +++    +D   + Y+SGTTG 
Sbjct: 135 KLKGLAEDDGVTVVTIDDPPEGCLHFSELTQADENELPEVEIS-PDDVVALPYSSGTTGL 193

Query: 185 PKGVVHTHK----SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240
           PKGV+ THK    S+  QV        + S D  L  LP+ H++ L + LL  L  GA +
Sbjct: 194 PKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAI 253

Query: 241 EFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
             MPKF   ++  + QR +             +T    VP +   + +       +L + 
Sbjct: 254 LIMPKFEIGALLELIQRHK-------------VTIAPFVPPIVLAIAKSPVVEKYDLSS- 299

Query: 298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHR-----LLERYGMTEFVMAISNPLRGAR 352
                  +R+++ G++    P+ ++ E     +     L + YGMTE    ++  L  A+
Sbjct: 300 -------IRMVLSGAA----PLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAK 348

Query: 353 -----KAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKVTKDSF 405
                K+G+ G  +   ++KI + E+G+       GEIC++ P + K Y   P+ T ++ 
Sbjct: 349 EPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTI 408

Query: 406 TADGFFKTGDTGKQDEDGYYIILGR 430
             DG+  TGD G  D+D    I+ R
Sbjct: 409 DKDGWLHTGDIGYIDDDDELFIVDR 433

Length = 537

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 95.4 bits (238), Expect = 3e-21
 Identities = 76/286 (26%), Positives = 108/286 (37%), Gaps = 50/286 (17%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHK---SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
           DPA  +YTSGTTG PK  + +H+      A    L         D    CLPL+H + L 
Sbjct: 82  DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLL---KPDDVLYLCLPLYHSNALT 138

Query: 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
               + L AGA++    KFS    W   R         A    TAF  V  +  R +   
Sbjct: 139 VGWSSALAAGASLALRRKFSASQFWPDVRR------YGA----TAFQYVGEL-CRYLLNQ 187

Query: 288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEFVMAISN 346
                +           LR  + G+   P  +  +++   G  R++E YG TE  +   N
Sbjct: 188 PEKPDDRDH-------PLR-KIIGNGLRP-DIWDEFKERFGVPRIVEFYGSTEGNVGFIN 238

Query: 347 PLRGARKAGTVGNPLPG----VQVKIAEDESGSDAAG---------VGEICVK--SPSLF 391
                 K G VG   P     V+  +  +E   DA G         VG +  +    + F
Sbjct: 239 LF---NKPGAVGRLPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPF 295

Query: 392 KEYWKLPKVTK----DSFT-ADGFFKTGDTGKQDEDGYYIILGRKG 432
             Y       K    D F   D +F TGD  ++D  GY+  + R G
Sbjct: 296 DGYTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLG 341

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 96.1 bits (239), Expect = 3e-21
 Identities = 108/469 (23%), Positives = 185/469 (39%), Gaps = 97/469 (20%)

Query: 28  SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLG 87
           +Y ++  +A+RI S + S  +                   G R GI      E++  +  
Sbjct: 79  TYKEVYDAAIRIGSAIRSRGVNP-----------------GDRCGIYGSNCPEWIIAMEA 121

Query: 88  TWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVP 147
               G   VPL  +   + +  +++ +++S+    E     + +   K  +    I    
Sbjct: 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFG 181

Query: 148 NVSSE---------TTVFDQSQAEKMDGQRGEDPA-------LIVYTSGTTGKPKGVVHT 191
           +VSSE          + F   +   M     E P         I+YTSGTTG+PKGV+ T
Sbjct: 182 DVSSEQKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILT 241

Query: 192 HKSIDAQV----QMLTEAWEY-TSADQFLHCLPLHHVHGLFNALLAP--LYAGATVEFMP 244
           +++I A+V     +L       T  D +   LPL HV   ++ ++    +  GA++ F  
Sbjct: 242 NRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHV---YDQVIETYCISKGASIGFW- 297

Query: 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA--------------- 289
           +  +R + +  +   P          T F GVP +Y R+  G                  
Sbjct: 298 QGDIRYLMEDVQALKP----------TIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDF 347

Query: 290 --------MDTELQAASAS---------AAKQ-----LRLMMCGSSALPLPVMQQWETIT 327
                   +   L+   AS           K+     +RL++ G++ LP  V +     +
Sbjct: 348 AYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTS 407

Query: 328 GHRLLERYGMTEFVMAISNPLRGA-RKAGTVGNPLPGVQVKIAE-DESGSDAAG---VGE 382
              L + YG+TE        +       GTVG P+  ++ ++    E G DA      GE
Sbjct: 408 CSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGE 467

Query: 383 ICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
           IC++  +LF  Y K   +T++    DG+F TGD G+   +G   I+ RK
Sbjct: 468 ICLRGNTLFSGYHKRQDLTEEVLI-DGWFHTGDIGEWQPNGAMKIIDRK 515

Length = 660

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 94.5 bits (235), Expect = 6e-21
 Identities = 80/266 (30%), Positives = 120/266 (45%), Gaps = 41/266 (15%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-----EYTSADQFLHCLPLHHVH 224
           +D ALI +TSGTTG PKG +H H+ I A    + +A+     + T  D F+   PL    
Sbjct: 147 DDVALIGFTSGTTGLPKGTMHFHRDILA----ICDAFPRHVLQPTPDDVFIGSPPLAFTF 202

Query: 225 GLFNALLAPLYAGATVEFMPKFSVRGIW---QRWRESYPVNGNRAGEAITAFTGVPTMYT 281
           GL   +L PL  GA+   + + +   +    Q  R            A   FT  PT   
Sbjct: 203 GLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHR------------ATILFT-APT--- 246

Query: 282 RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-F 340
                Y AM  +++A   S+   LR  +     LP  V Q W   TG ++++  G TE  
Sbjct: 247 ----AYRAMLIKVKAFDISS---LRKCVSAGETLPAKVWQDWYERTGLKIIDGIGATEML 299

Query: 341 VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPK 399
            + IS     A+   T G P+PG + +I +D+      G  G + V+ P+  +    L  
Sbjct: 300 HIFISANEENAKPGAT-GKPVPGYEARIVDDQGNEVPRGEAGRLAVRGPTGCR---YLDD 355

Query: 400 VTKDSFTADGFFKTGDTGKQDEDGYY 425
             +  +  DG+  TGD  +QDEDGY+
Sbjct: 356 ERQQEYVRDGWNVTGDIFRQDEDGYF 381

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 94.6 bits (236), Expect = 8e-21
 Identities = 80/302 (26%), Positives = 121/302 (40%), Gaps = 73/302 (24%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
           +D A I++TSG+TG PKGVV+TH   +AQ++ L E +     +  L   PL     LF  
Sbjct: 174 DDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPL---FALFGP 230

Query: 230 LLAPLYAGAT--VEFM---------PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278
            L     G T  +  M         P      I                  +T   G P 
Sbjct: 231 AL-----GMTSVIPDMDPTRPATVDPAKLFAAI--------------ERYGVTNLFGSPA 271

Query: 279 MYTRLIQGYEAMDTELQAASASAAK--QLRLMMCGSSALPLPVMQQWETITGH--RLLER 334
           +  RL           +   A+  K   LR ++   + +P+ V++++  +      +L  
Sbjct: 272 LLERL----------GRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTP 321

Query: 335 YGMTEFVMAISN-----PLRGARK-----AGT-VGNPLPGVQVKIAE--DESGSD----- 376
           YG TE  + IS+      L   R      AG  VG P+ GV+V+I    D    +     
Sbjct: 322 YGATE-ALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDAL 380

Query: 377 --AAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADG----FFKTGDTGKQDEDGYYIILG 429
             A G +GEI V  P + + Y+  P+ T+ +   DG    + + GD G  D  G     G
Sbjct: 381 RLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCG 440

Query: 430 RK 431
           RK
Sbjct: 441 RK 442

Length = 552

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 93.5 bits (232), Expect = 4e-20
 Identities = 86/378 (22%), Positives = 147/378 (38%), Gaps = 42/378 (11%)

Query: 66  GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
           G    +G+  + S E V  +L    +G   VPL   YP   L +++ DS + ++LS    
Sbjct: 559 GPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQ--- 615

Query: 126 REVLQNVASKSGAKFSLIPPVPNVS-SETTVFDQSQAEKMDGQR--GEDPALIVYTSGTT 182
                   S  G K  L   V  +       + +  +E+  G     E+ A ++YTSG+T
Sbjct: 616 --------SHLGRKLPLAAGVQVLDLDRPAAWLEGYSEENPGTELNPENLAYVIYTSGST 667

Query: 183 GKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF 242
           GKPKG  + H+++  ++  + +A+     D  L   P      ++     PL +GA +  
Sbjct: 668 GKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWE-FFWPLMSGARLVV 726

Query: 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302
                 R   +              E +     VP+M    +Q +      LQ    ++ 
Sbjct: 727 AAPGDHRDPAKLVELI-------NREGVDTLHFVPSM----LQAF------LQDEDVASC 769

Query: 303 KQLRLMMCGSSALPLPVMQQ-WETITGHRLLERYGMTEFVMAISNPLRGARKAGTV--GN 359
             LR ++C   ALP    +Q +  +    L   YG TE  + +++         +V  G 
Sbjct: 770 TSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGR 829

Query: 360 PLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGF------FK 412
           P+  +   I +        GV GE+ +    L + Y   P +T + F    F      ++
Sbjct: 830 PIANLACYILDANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYR 889

Query: 413 TGDTGKQDEDGYYIILGR 430
           TGD  +   DG     GR
Sbjct: 890 TGDLARYRADGVIEYAGR 907

Length = 5163

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 92.4 bits (230), Expect = 4e-20
 Identities = 81/323 (25%), Positives = 131/323 (40%), Gaps = 78/323 (24%)

Query: 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTH-------KSIDAQVQMLTEAWEYTSADQF 214
             ++ Q+      ++YTSGTTG PKGV+ +H       K+    + + T   E       
Sbjct: 142 AIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKAAVKHMDLRTVGQES-----V 196

Query: 215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG-IWQRWRESYPVNGNRAGEAITAF 273
           +  LPL H+      +  P+  G  V F    +++G + +  RE  P          TAF
Sbjct: 197 VSYLPLSHIAAQILDIWLPISVGGCVYFAQPDALKGTLVKTLREVRP----------TAF 246

Query: 274 TGVPTMYTRL---IQGYEAMDTELQAASASAAK------QLRLMMCGSSALPL------- 317
            GVP ++ ++   ++   A  T L+   AS AK       L+LM  G S  P+       
Sbjct: 247 MGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMG-GESPPPMCFRLAKK 305

Query: 318 -----------------------PVMQQWETITGH-------RLLERYGMTEFVMAISNP 347
                                  P+ ++    T          ++E YGM+E     +  
Sbjct: 306 LVFKKVRKALGLDRCQKFFTGAAPISRE----TLEFFLSLNIPIMELYGMSETSGPHTVS 361

Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTA 407
                +  + G  LPG + KI       DA G+GEIC+    +F  Y  + + T+++   
Sbjct: 362 NPQNYRLLSCGKALPGCETKIHNP----DADGIGEICIWGRHVFMGYLNMEEKTEEAIDE 417

Query: 408 DGFFKTGDTGKQDEDGYYIILGR 430
           DG+  +GD G  D+DG+  I GR
Sbjct: 418 DGWLHSGDLGFLDDDGFLYITGR 440

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 91.7 bits (228), Expect = 7e-20
 Identities = 77/272 (28%), Positives = 121/272 (44%), Gaps = 42/272 (15%)

Query: 177 YTSGTTGKPKGVVHTHKS--IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PKGV+++H+S  + A +    +A   ++AD  L  +PL H +    A  AP 
Sbjct: 184 YTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPS 243

Query: 235 YAGATVEFMPKFSVRG--IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDT 292
                V  MP   + G  +++              E +T   GVPT++  L+Q  E    
Sbjct: 244 MGTKLV--MPGAKLDGASVYELL----------DTEKVTFTAGVPTVWLMLLQYMEKEGL 291

Query: 293 ELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF-----VMAISNP 347
           +L          L++++CG SA+P  +++ +E + G  +   +GMTE      + A+  P
Sbjct: 292 KL--------PHLKMVVCGGSAMPRSMIKAFEDM-GVEVRHAWGMTEMSPLGTLAALKPP 342

Query: 348 LRGARKAG------TVGNPLPGVQVKIAEDESGS---DAAGVGEICVKSPSLFKEYWKLP 398
                           G P  GV++KI +D       D    G + V+ P++   Y+   
Sbjct: 343 FSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAAAYY--- 399

Query: 399 KVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
           +V  +    DGFF TGD    D  GY  I  R
Sbjct: 400 RVDGEILDDDGFFDTGDVATIDAYGYMRITDR 431

Length = 542

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 91.2 bits (226), Expect = 2e-19
 Identities = 87/369 (23%), Positives = 141/369 (38%), Gaps = 42/369 (11%)

Query: 71   IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ 130
            +G+  + S E V G+L    +G   VPL   YPE  L +++ DS   ++LS    R    
Sbjct: 3110 VGVAVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHLR---- 3165

Query: 131  NVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH 190
                       L   V  +  +    + ++A        E+ A ++YTSG+TGKPKGV  
Sbjct: 3166 ---------LPLAQGVQVLDLDRGDENYAEANPAIRTMPENLAYVIYTSGSTGKPKGVGI 3216

Query: 191  THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG 250
             H ++   +  + +A+     D+ L              L  PL +GA V       V  
Sbjct: 3217 RHSALSNHLCWMQQAYGLGVGDRVLQFTTF-SFDVFVEELFWPLMSGARV-------VLA 3268

Query: 251  IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310
              + WR+   +      E +      P+M              L+   A     L+ ++C
Sbjct: 3269 GPEDWRDPALLVELINSEGVDVLHAYPSMLQAF----------LEEEDAHRCTSLKRIVC 3318

Query: 311  GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGT--VGNPLPGVQVKI 368
            G  ALP  + QQ     G  L   YG TE  + +++            +G P+      I
Sbjct: 3319 GGEALPADLQQQV--FAGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYI 3376

Query: 369  AEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGF------FKTGDTGKQDE 421
             +        G +GE+ +    L + Y   P +T + F  D F      ++TGD  +   
Sbjct: 3377 LDGSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRA 3436

Query: 422  DGYYIILGR 430
            DG    +GR
Sbjct: 3437 DGVIEYIGR 3445

Length = 5163

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 89.8 bits (223), Expect = 2e-19
 Identities = 104/444 (23%), Positives = 171/444 (38%), Gaps = 77/444 (17%)

Query: 19  AIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78
            I +  +  S+D+LA  A R +  L +                V  G C A   ++ +  
Sbjct: 4   TIISGDRRRSFDELAQRAARAAGGLAA--------------LGVRPGDCVA---LLMRND 46

Query: 79  FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK--S 136
           F F          G  AVP+   +   E+ +++ DS   ++++  D   +L  +AS   +
Sbjct: 47  FAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIAHAD---LLHGLASALPA 103

Query: 137 GAKFSLIPPVPNVSSE-------------TTVFDQ--SQAEKMDGQRGEDPALIVYTSGT 181
           G     +P  P +++                 ++   +Q E  DG     P  ++YTSGT
Sbjct: 104 GVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEPYDGPPVPQPQSMIYTSGT 163

Query: 182 TGKPKGVVH---THKSIDAQVQMLTEAWEYTSADQFLHCLPLHH----VHGLFNALLAPL 234
           TG PKGV     T +   A  QM    +      + L   PL+H     +GL    L   
Sbjct: 164 TGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRL--- 220

Query: 235 YAGATVEFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD 291
             G  +   P+F    +  + +R R             IT    VPTM+ RL++  E + 
Sbjct: 221 --GGVLVLQPRFDPEELLQLIERHR-------------ITHMHMVPTMFIRLLKLPEEVR 265

Query: 292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF-VMAISNPLRG 350
            +   +S      LR ++  ++  P  V +      G  + E YG TE   +  +     
Sbjct: 266 AKYDVSS------LRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDA 319

Query: 351 ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSP--SLFKEYWKLPKVTKDSFTA 407
               GTVG   PG +++  +++      G +GEI  +      F  + K  K  +     
Sbjct: 320 LSHPGTVGKAAPGAELRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEK--RAEIDR 377

Query: 408 DGFFKTGDTGKQDEDGYYIILGRK 431
            GF  +GD G  D DGY  +  RK
Sbjct: 378 GGFITSGDVGYLDADGYLFLCDRK 401

Length = 509

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 89.2 bits (221), Expect = 4e-19
 Identities = 69/272 (25%), Positives = 111/272 (40%), Gaps = 33/272 (12%)

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEA-WEYTSADQFLHCLPLHHVHG 225
             E PA + YTSGTTG PKG V   ++ +++V  M T+A   +   +  L  +PL+HV G
Sbjct: 150 EPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPLYHVIG 209

Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEA--ITAFTGVPTMYTRL 283
            F  L+A L            ++ G +    E  P +  +  E   +T+    PT    L
Sbjct: 210 FFAVLVAAL------------ALDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDAL 257

Query: 284 IQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA 343
               E    +L          L  +    + +P  V+++         +  YG TE + +
Sbjct: 258 AAAAEGAPLKL--------DSLEHVTFAGATMPDAVLERVNQHLPGEKVNIYGTTEAMNS 309

Query: 344 ISNPLRGARKAGTVGNP--LPGVQ-VKIAEDESGSDAAGV-GEICVK-SPSLFKEYWKLP 398
           +        + GT   P     V+ V+I      +   G  GE+ V  + + F  Y   P
Sbjct: 310 LYMR---DPRTGTEMRPGFFSEVRIVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQP 366

Query: 399 KVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
           + T +    DG+++T D    D  G   ILGR
Sbjct: 367 QATAEKLQ-DGWYRTSDVAVVDPSGTVRILGR 397

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 89.4 bits (222), Expect = 4e-19
 Identities = 72/273 (26%), Positives = 110/273 (40%), Gaps = 36/273 (13%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230
             AL+  TSGTT  PK V+H   ++    + +  A+ Y      L  LP   V G F+ L
Sbjct: 182 AGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFG-FSTL 240

Query: 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
           L  L  GA +   P F      +  R             +T   G   M  R+      +
Sbjct: 241 LGALAGGAPLVCEPVFDAARTARALRR----------HRVTHTFGNDEMLRRI------L 284

Query: 291 DTELQAASASAAKQLRL--MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAI---- 344
           DT  + A   +A+             L      +   +TG      YG +E V A+    
Sbjct: 285 DTAGERADFPSARLFGFASFAPALGELAALARARGVPLTG-----LYGSSE-VQALVALQ 338

Query: 345 --SNPLRGARKAGTVGNPL-PGVQVKIAEDESGSDAA-GV-GEICVKSPSLFKEYWKLPK 399
             ++P+    + G  G P  P  +V+  + + G+    G  GEI +++PSL + Y   P 
Sbjct: 339 PATDPVSVRIEGG--GRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPD 396

Query: 400 VTKDSFTADGFFKTGDTGKQDEDGYYIILGRKG 432
            T  + T DG+F+TGD G    DG ++   R G
Sbjct: 397 ATARALTDDGYFRTGDLGYTRGDGQFVYQTRMG 429

Length = 540

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 87.1 bits (216), Expect = 4e-18
 Identities = 86/380 (22%), Positives = 145/380 (38%), Gaps = 45/380 (11%)

Query: 66   GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
            G    +G+  + S E +  +L    +G   VPL   YP   L +++ DS + ++L+    
Sbjct: 3143 GPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHL 3202

Query: 126  REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKP 185
             E L   A  +      +       +  +              GE+ A ++YTSG+TGKP
Sbjct: 3203 LEQLPAPAGDTALTLDRLDLNGYSENNPSTRVM----------GENLAYVIYTSGSTGKP 3252

Query: 186  KGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK 245
            KGV   H ++   +  + EA+E  + D+ L  +      G     L  L  G  +     
Sbjct: 3253 KGVGVRHGALANHLCWIAEAYELDANDRVLLFMSF-SFDGAQERFLWTLICGGCL----- 3306

Query: 246  FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305
              VR       E      +    +I  F   P    +            + A  +    L
Sbjct: 3307 -VVRDNDLWDPEELWQAIHAHRISIACF--PPAYLQQF----------AEDAGGADCASL 3353

Query: 306  RLMMCGSSALPLPVMQQWETITGHR-LLERYGMTEFVMAI------SNPLRGARKAGTVG 358
             + + G  A+P    +Q +     R L   YG TE V+ +       + +  A  A  +G
Sbjct: 3354 DIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYA-PIG 3412

Query: 359  NPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGF------- 410
             P+ G  + + + +      GV GE+ +    L + Y + P +T + F AD F       
Sbjct: 3413 RPVAGRSIYVLDGQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRL 3472

Query: 411  FKTGDTGKQDEDGYYIILGR 430
            ++TGD  +   DG    LGR
Sbjct: 3473 YRTGDLARYRADGVIEYLGR 3492

Length = 3956

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 86.2 bits (214), Expect = 4e-18
 Identities = 78/288 (27%), Positives = 113/288 (39%), Gaps = 62/288 (21%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM----------LTEAWEYTSADQFLHCLP 219
           +DP    +TSGTTG+PK  V TH       QM          L      T  D  L   P
Sbjct: 163 DDPCWFFFTSGTTGRPKAAVLTHG------QMAFVITNHLADLMPG--TTEQDASLVVAP 214

Query: 220 LHH---VHGLFNALLAPLYAGATVEFMP--KFSVRGIWQ---RWRESYPVNGNRAGEAIT 271
           L H   +H L       +  GA    +P  +F    +W    R R +             
Sbjct: 215 LSHGAGIHQLCQ-----VARGAATVLLPSERFDPAEVWALVERHRVT------------N 257

Query: 272 AFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRL 331
            FT VPT+          M  E  A        LR ++   + +     ++     G  L
Sbjct: 258 LFT-VPTILK--------MLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVL 308

Query: 332 LERYGMTEFVMAIS-------NPLRG-ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGE 382
           ++ +G+ E    I+       +   G   + GT G    G++V+I +DE      G  GE
Sbjct: 309 VQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGETGE 368

Query: 383 ICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
           ICV  P++F  Y+  P+    +F  DG+F+TGD G  D  G+  I GR
Sbjct: 369 ICVIGPAVFAGYYNNPEANAKAFR-DGWFRTGDLGHLDARGFLYITGR 415

Length = 528

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 85.1 bits (211), Expect = 9e-18
 Identities = 95/419 (22%), Positives = 164/419 (39%), Gaps = 87/419 (20%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLAL--------SYPESELLHVMHDS-DISM 118
           G R+ ++A+   +FV       ++G + VPL L        SY     L  M  S   + 
Sbjct: 74  GDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESY--IAQLRGMLASAQPAA 131

Query: 119 VLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRG--EDPALIV 176
           +++ ++    +      +     L             F       +   R   +D A + 
Sbjct: 132 IITPDELLPWVNEATHGNPLLHVLSH---------AWFKALPEADVALPRPTPDDIAYLQ 182

Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHVHGLFNALLAPLY 235
           Y+SG+T  P+GV+ TH+++ A ++ ++ +  +    D+ +  LP +H  GL   LL P+ 
Sbjct: 183 YSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVA 242

Query: 236 AGATVEFMP--KFSVRGI-WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDT 292
              +V+++P   F+ R + W        ++ NR   + +     P        GYE    
Sbjct: 243 TQLSVDYLPTRDFARRPLQWLDL-----ISRNRGTISYS-----PPF------GYEL--C 284

Query: 293 ELQAASASAA----KQLRLMMCGSSALPLPVMQQW-ETITGHRLLER-----YGMTEFVM 342
             +  S   A       R+   G+  +   V+ Q+ E        ++     YG+ E  +
Sbjct: 285 ARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATL 344

Query: 343 AIS-NPLRGARKAGTV---------------------------GNPLPGVQVKIAEDESG 374
           A+S +PL        V                           G  LPG +++I  +E+G
Sbjct: 345 AVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEI-RNEAG 403

Query: 375 SDAA--GVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
                  VG ICV+ PSL   Y++    ++D   ADG+  TGD G    DGY  I GR 
Sbjct: 404 MPLPERVVGHICVRGPSLMSGYFRDE-ESQDVLAADGWLDTGDLGYL-LDGYLYITGRA 460

Length = 579

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 81.8 bits (202), Expect = 2e-16
 Identities = 103/401 (25%), Positives = 163/401 (40%), Gaps = 77/401 (19%)

Query: 80  EFVAGVLGTWFSGCIAVPLALSYP-ES-------ELLHVMHDSDISMVLSTEDYREVLQN 131
           ++VA   G  ++G IAVP   +YP ES        LL ++ D++  ++L+  D R+ L  
Sbjct: 76  DYVAAFFGCLYAGVIAVP---AYPPESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQ 132

Query: 132 VASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ--RGEDPALIVYTSGTTGKPKGVV 189
           +   + A     P +  V +     D + AE       + +D A + YTSG+T  PKGV 
Sbjct: 133 MEELAAAN---APELLCVDT----LDPALAEAWQEPALQPDDIAFLQYTSGSTALPKGVQ 185

Query: 190 HTHKSIDAQVQMLTEAW--EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
            +H ++ A  Q++   +  +    D  +  LPL+H  GL   LL P+++G     M    
Sbjct: 186 VSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCVLMSPAY 245

Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL-- 305
                 RW E+     +  G  I   +G P    RL           +  S SA ++L  
Sbjct: 246 FLERPLRWLEAI----SEYGGTI---SGGPDFAYRLCS---------ERVSESALERLDL 289

Query: 306 ---RLMMCGSSALPLPVMQQWET------ITGHRLLERYGMTEFVMAISNPLRG------ 350
              R+   GS  +    ++++                 YG+ E  + +S   RG      
Sbjct: 290 SRWRVAYSGSEPIRQDSLERFAEKFAACGFDPDSFFASYGLAEATLFVSGGRRGQGIPAL 349

Query: 351 -------ARK-----AGTV----GNPLPGVQVKIAEDESGSDAAG--VGEICVKSPSLFK 392
                  AR       G+V    G   PG  V I + +S        VGEI    PS+  
Sbjct: 350 ELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLIVDPQSLEVLGDNRVGEIWASGPSIAH 409

Query: 393 EYWKLPKVTKDSFTA-DG--FFKTGDTGKQDEDGYYIILGR 430
            YW+ P+ +  +F   DG  + +TGD G    DG   + GR
Sbjct: 410 GYWRNPEASAKTFVEHDGRTWLRTGDLGFL-RDGELFVTGR 449

Length = 4334

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 79.8 bits (197), Expect = 5e-16
 Identities = 84/311 (27%), Positives = 134/311 (43%), Gaps = 56/311 (18%)

Query: 151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML--TEAWEY 208
             +TV+D  + ++         A I Y++GTTG PKGVV++H+S+  Q   L  T++   
Sbjct: 168 GRSTVYDWPELDE------TTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAV 221

Query: 209 TSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFM-PKFSVRGIWQRWRESYPVNGNRAG 267
           T  + FL C+P++HV   +   LA   +G  + F  P  S   + +    + P   +   
Sbjct: 222 THGESFLCCVPIYHVLS-WGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAH--- 277

Query: 268 EAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT 327
                  GVPT++ +L+  Y     E  +        L+ +  G SA+P  +++ WE   
Sbjct: 278 -------GVPTLWIQLMVHYLKNPPERMS--------LQEIYVGGSAVPPILIKAWEERY 322

Query: 328 GHRLLERYGMTEF--VMAISNPLRG----ARKAGTV--GNPLPGVQVKIAEDE---SGSD 376
           G  ++  +GMTE   V  ++ P  G    AR A  V  G     ++ +I  D      +D
Sbjct: 323 GVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVNDGQVMESTD 382

Query: 377 AAGVGEICVKSPSLFKEYWKLPKVT----------------KDSFTADGFFKTGDTGKQD 420
               GEI V+   +   Y+  P                    D FTADG+ +TGD G   
Sbjct: 383 -RNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVT 441

Query: 421 EDGYYIILGRK 431
            DG+  I  R 
Sbjct: 442 RDGFLTIHDRA 452

Length = 576

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 79.1 bits (196), Expect = 5e-16
 Identities = 101/428 (23%), Positives = 162/428 (37%), Gaps = 106/428 (24%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
            ++A+R + +  ++ QL +   ++++      +         E S V          +  
Sbjct: 18  QAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVV--------EGSGVA---------LRG 60

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           K S E +   L     G   +PL    P+  L  ++    +   L  E            
Sbjct: 61  KNSPETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGEN--------- 111

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
               FS +  +     E        A     QR    A +  TSG+TG PK  VHT ++ 
Sbjct: 112 ---TFSALTSLHLQLVEGA-----HAVAWQPQR---LATMTLTSGSTGLPKAAVHTAQAH 160

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP-LYAGATVEFMPKFSVRGIWQR 254
            A  + +     +T+ D +L  LPL HV G    ++   LYAGAT+              
Sbjct: 161 LASAEGVLSLMPFTAQDSWLLSLPLFHVSGQ--GIVWRWLYAGATLVV------------ 206

Query: 255 WRESYPVNGNRAGEAITAFTG---VPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
            R+  P+      +A+   T    VPT   RL+            +   + K + L   G
Sbjct: 207 -RDKQPLE-----QALAGCTHASLVPTQLWRLLD---------NRSEPLSLKAVLL---G 248

Query: 312 SSALPLPVMQQWE-----TITGHRLLERYGMTEF---VMAISNPLRGARKAGTVGNPLPG 363
            +A+P+ + +Q E        G      YG+TE    V A     R    AG VG+PLPG
Sbjct: 249 GAAIPVELTEQAEQQGIRCWCG------YGLTEMASTVCAK----RADGLAG-VGSPLPG 297

Query: 364 VQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFT-ADGFFKTGDTGKQDED 422
            +VK+ +           EI ++  SL   YW+  ++        +G+F T D G+   +
Sbjct: 298 REVKLVDG----------EIWLRGASLALGYWRQGQLV--PLVNDEGWFATRDRGEWQ-N 344

Query: 423 GYYIILGR 430
           G   ILGR
Sbjct: 345 GELTILGR 352

Length = 458

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 80.2 bits (198), Expect = 7e-16
 Identities = 92/389 (23%), Positives = 156/389 (40%), Gaps = 65/389 (16%)

Query: 66   GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
            G    + I A+ S + + G+L    +G   VPL   YP   L +++ DS + ++L+    
Sbjct: 1179 GPDVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLT---- 1234

Query: 126  REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ------RGEDPALIVYTS 179
                             +P    VS      D    +    Q       G++ A ++YTS
Sbjct: 1235 ----------QSHLLERLPQAEGVS--AIALDSLHLDSWPSQAPGLHLHGDNLAYVIYTS 1282

Query: 180  GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239
            G+TG+PKGV +TH ++  ++Q +   +    +D  +   P+     ++     PL  G  
Sbjct: 1283 GSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFW-PLITGC- 1340

Query: 240  VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY--TRLIQGYEAMDTELQAA 297
                 +  + G  +  R+       R  E +  + GV T++    L+Q +      +   
Sbjct: 1341 -----RLVLAGPGEH-RDPQ-----RIAELVQQY-GVTTLHFVPPLLQLF------IDEP 1382

Query: 298  SASAAKQLRLMMCGSSALPLP----VMQQWETITGHRLLERYGMTEFVMAISNPLRGARK 353
             A+A   LR +  G  ALP      V+Q+   +  H    RYG TE   AI+      + 
Sbjct: 1383 LAAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLH---NRYGPTE--TAINVTHWQCQA 1437

Query: 354  AGT----VGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTAD 408
                   +G PL  V  ++ + E      GV GE+C+    L + Y   P +T + F  D
Sbjct: 1438 EDGERSPIGRPLGNVLCRVLDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPD 1497

Query: 409  GF-------FKTGDTGKQDEDGYYIILGR 430
                     ++TGD  + + DG    LGR
Sbjct: 1498 PLGEDGARLYRTGDRARWNADGALEYLGR 1526

Length = 4334

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 79.2 bits (196), Expect = 8e-16
 Identities = 72/271 (26%), Positives = 106/271 (39%), Gaps = 47/271 (17%)

Query: 174 LIVYTSGTTGKPKGVVHTHKSIDAQV-QMLT-------EAWEYTSADQFLHCLPLHHVHG 225
           +++ TSGTTG PKG      S  A +  +L+       E     +        P+ H  G
Sbjct: 211 IVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPA--------PMFHATG 262

Query: 226 LFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT 281
             +  LA +  G+TV    +F    ++  I  + +              TA   VP M +
Sbjct: 263 WAHLTLA-MALGSTVVLRRRFDPEATLEDI-AKHK-------------ATALVVVPVMLS 307

Query: 282 RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF- 340
           R++      D   +  +      L+++    SAL   +  +     G  L   YG TE  
Sbjct: 308 RIL------DLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVA 361

Query: 341 VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPK 399
              I+ P   A   GTVG P  GV VKI ++       G VG I V +   F+ Y     
Sbjct: 362 FATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGNGFPFEGYTD--- 418

Query: 400 VTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
             +D    DG   +GD G  DEDG   + GR
Sbjct: 419 -GRDKQIIDGLLSSGDVGYFDEDGLLFVDGR 448

Length = 549

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 82/319 (25%), Positives = 120/319 (37%), Gaps = 93/319 (29%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA-DQFLHCLPLHHVHGLFNA 229
           D AL+  TSG+TG PK V  TH ++ A  + +  A E+    D  +  LPL H  G+   
Sbjct: 153 DLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGF 212

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
           L  P+Y GA +                   P++          F   P ++  LI  Y  
Sbjct: 213 LTVPMYFGAELVK---------------VTPMD----------FLRDPLLWAELISKYRG 247

Query: 290 MDTELQAASASA--------AKQ----------LRLMMCGSSALPLPVMQQWETITGHR- 330
             T   AA   A         +Q          LR  + G+  +    ++      G R 
Sbjct: 248 TMT---AAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLD-AGARF 303

Query: 331 ------LLERYGMTEFVMAIS-----NPLR---------------------GARKAGTVG 358
                 +L  YGM E  +A+S       L                        R+  T+G
Sbjct: 304 GLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLG 363

Query: 359 NPLPGVQVKIAEDESGS--DAAGVGEICVKSPSLFKEYWKLPKVTKDSFT----ADGFFK 412
            PLPG++V++  DE G      GVG I ++  S+   Y     +T D F     ADG+  
Sbjct: 364 PPLPGLEVRVV-DEDGQVLPPRGVGVIELRGESVTPGY-----LTMDGFIPAQDADGWLD 417

Query: 413 TGDTGKQDEDGYYIILGRK 431
           TGD G   E+G  ++ GR 
Sbjct: 418 TGDLGYLTEEGEVVVCGRV 436

Length = 545

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 76/302 (25%), Positives = 122/302 (40%), Gaps = 71/302 (23%)

Query: 156 FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS--IDAQVQMLTEAWEYTSADQ 213
           FD++QA  +            YTSGTTG PKG +++H+S  + A    L +A   ++ D 
Sbjct: 173 FDENQASSL-----------CYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDA 221

Query: 214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
            L  +P+ HV+       APL     V   P    + +++              E +T  
Sbjct: 222 VLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELI----------EAERVTFS 271

Query: 274 TGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLE 333
            GVPT++  L+         ++ A    +  LR  + G SA P  +++ +E   G  ++ 
Sbjct: 272 AGVPTVWLGLLN-------HMREAGLRFST-LRRTVIGGSACPPAMIRTFEDEYGVEVIH 323

Query: 334 RYGMTEFVMAISNPLRGARKAGTV----------------------GNPLPGVQVKIAED 371
            +GMTE      +PL      GT+                      G  + GV +KI  D
Sbjct: 324 AWGMTEM-----SPL------GTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGD 372

Query: 372 ESGS---DAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIIL 428
           +      D    G++ V+ P +   Y++       S   DG+F TGD    D DG+  I 
Sbjct: 373 DGRELPWDGKAFGDLQVRGPWVIDRYFR----GDASPLVDGWFPTGDVATIDADGFMQIT 428

Query: 429 GR 430
            R
Sbjct: 429 DR 430

Length = 539

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 77.9 bits (192), Expect = 2e-15
 Identities = 87/324 (26%), Positives = 130/324 (40%), Gaps = 100/324 (30%)

Query: 175 IVYTSGTTGKPKGVVHTHKSIDA---QVQMLTEAWE--YTSADQFLHCLPLHHV------ 223
           I+YTSGT+G PKGVV TH+++      V +  E +E   T  D +L  LPL H+      
Sbjct: 225 IMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIE 284

Query: 224 -------------HGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAI 270
                        HG  NAL   L     +E  P                          
Sbjct: 285 EYFFRKGASVGYYHGDLNALRDDL-----MELKP-------------------------- 313

Query: 271 TAFTGVPTMYTRLIQGYEAMDTEL-------------------------QAASASA---- 301
           T   GVP ++ R+ +G +    EL                         + AS  A    
Sbjct: 314 TLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLA 373

Query: 302 -----AK---QLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFV--MAISNPLRGA 351
                AK   +LRL++ G + L   + +     +   +++ YG+TE +    +  P    
Sbjct: 374 FRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMC 433

Query: 352 RKAGTVGNPLPGVQVKIAE-DESGSDAAG---VGEICVKSPSLFKEYWKLPKVTKDSFTA 407
              GTVG P    ++++ E  E G D  G    GEICV+   LF  Y+K P++T++    
Sbjct: 434 M-LGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-K 491

Query: 408 DGFFKTGDTGKQDEDGYYIILGRK 431
           DG+F TGD G+   +G   I+ RK
Sbjct: 492 DGWFHTGDIGEILPNGVLKIIDRK 515

Length = 660

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 74/285 (25%), Positives = 114/285 (40%), Gaps = 53/285 (18%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229
            DP ++++TSGTTG PK V  +H  +    + LTE +  T  D     +PL H + +  A
Sbjct: 150 MDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVM-A 208

Query: 230 LLAP-LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE 288
             AP + +GA V    KFS  G     R        R G     + G P  Y  ++   E
Sbjct: 209 GWAPAVASGAAVALPAKFSASGFLDDVR--------RYGATYFNYVGKPLAY--ILATPE 258

Query: 289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT------GHRLLERYGMTEFVM 342
             D         A   LR+   G+ A P         I       G ++ + YG +E  +
Sbjct: 259 RPD--------DADNPLRVAF-GNEASP-------RDIAEFSRRFGCQVEDGYGSSEGAV 302

Query: 343 AISNPLRGARKAGTVGNPLPGVQV---------KIAE-DESGS----DAAGVGEICVKS- 387
            +     G    G++G   PGV +          +A  D  G+    D A +GE+   + 
Sbjct: 303 IVVRE-PGT-PPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEA-IGELVNTAG 359

Query: 388 PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKG 432
              F+ Y+  P+ T +     G + +GD   +D DG+    GR  
Sbjct: 360 AGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTA 403

Length = 540

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 77.0 bits (189), Expect = 4e-15
 Identities = 69/265 (26%), Positives = 107/265 (40%), Gaps = 37/265 (13%)

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQFLHCLPLHHVHGLF 227
           G+  A   YTSGTTG PK  +H H      V  M  +A   T  D  L    ++  +GL 
Sbjct: 144 GDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLG 203

Query: 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFT-----GVPTMYTR 282
           N++  PL  G +                    PV    A      F      GVP  + R
Sbjct: 204 NSVWFPLATGGSAVINS--------------APVTPEAAAILSARFGPSVLYGVPNFFAR 249

Query: 283 LIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGMTEFV 341
           +I           + S  + + LR ++    AL L + ++  E   G  +L+  G TE  
Sbjct: 250 VI----------DSCSPDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVG 299

Query: 342 MA-ISNPLRGARKAGTVGNPLPGVQVK-IAEDESGSDAAGVGEICVKSPSLFKEYWKLPK 399
              +SN +   R  GT+G  LP  +++ +A D + +     G++ V+ P++ K YW  P 
Sbjct: 300 QTFVSNRVDEWR-LGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRPD 358

Query: 400 VTKDSFTADGFFKTGDTGKQDEDGY 424
                   +G+  T D    D DG+
Sbjct: 359 SP---VANEGWLDTRDRVCIDSDGW 380

Length = 705

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 76.6 bits (188), Expect = 5e-15
 Identities = 91/385 (23%), Positives = 160/385 (41%), Gaps = 49/385 (12%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G+R+ +++    E    VL     G IAV    + P + +      +D +  L     + 
Sbjct: 66  GSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSK- 124

Query: 128 VLQNVASKSGAK-FSLIPPVP-NVSSETTVFDQS-QAEKMDGQRG---EDPALIVYTSGT 181
               +AS +  +    IP +  ++++ T   + S  A  + G      EDP  +++TSGT
Sbjct: 125 ----MASSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLAGNADQGSEDPLAMIFTSGT 180

Query: 182 TGKPKGVVHTHKSIDAQVQMLTE---AW-EYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237
           TG+PK V+  +++  A   +L +    W  +   +     LP  H+ GL+  L   ++ G
Sbjct: 181 TGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGG 240

Query: 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA 297
             V         G          +  N           VPT+ ++L+   ++ +  + + 
Sbjct: 241 LCVT--------GGENTTSLLEILTTNAVATTCL----VPTLLSKLVSELKSANATVPS- 287

Query: 298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-----FVMAISNPLRGAR 352
                  LRL+  G S      ++  E  TG R  + YG++E       +   +      
Sbjct: 288 -------LRLVGYGGSRAIAADVRFIEA-TGVRTAQVYGLSETGCTALCLPTDDGSIVKI 339

Query: 353 KAGTVGNPLPGVQVKIAEDESG-------SDAAGVGEICVKSPSLFKEYWKLPKVTKDSF 405
           +AG VG P PGV V +A  +           +A  G + +KSP+    YW  P+ T +  
Sbjct: 340 EAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL 399

Query: 406 TADGFFKTGDTGKQDEDGYYIILGR 430
             DG+  TGD  ++ EDG++ I GR
Sbjct: 400 -IDGWVNTGDLLERREDGFFYIKGR 423

Length = 540

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 75.9 bits (187), Expect = 9e-15
 Identities = 68/266 (25%), Positives = 114/266 (42%), Gaps = 26/266 (9%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-A 229
           + A    + GTTG PK +  TH      V+   E   +     +L  LP  H   L +  
Sbjct: 190 EVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPG 249

Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
            L    AG TV   P  S           +P+        +T    VP + +  +Q  E 
Sbjct: 250 ALGVFLAGGTVVLAPDPSP-------ELCFPL---IERHGVTVTALVPPLASLWLQAAEW 299

Query: 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA---ISN 346
              +L          LRL+  G + L   + ++   + G +L + +GM E ++    + +
Sbjct: 300 ERADL--------SSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDD 351

Query: 347 PLRGARKAGTVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDS 404
           P        T G PL P  +V++ + +    A G VGE+  + P   + Y++ P+    +
Sbjct: 352 P--PEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARA 409

Query: 405 FTADGFFKTGDTGKQDEDGYYIILGR 430
           F ADGF+++GD  ++D DGY ++ GR
Sbjct: 410 FDADGFYRSGDLVRRDPDGYLVVEGR 435

Length = 542

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 75.6 bits (186), Expect = 9e-15
 Identities = 97/451 (21%), Positives = 140/451 (31%), Gaps = 130/451 (28%)

Query: 25  KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
           K+++Y +     LR +  L            +N  S       G  + I    S EFV  
Sbjct: 4   KTWTYSETYDLVLRYAHWL---------HGDRNVQS-------GDFVAIDTTNSAEFVFL 47

Query: 85  VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIP 144
            L  W  G +   +  +     L+H +  S    V+   D                    
Sbjct: 48  WLALWSIGAVPAFINYNLSGDPLIHCLKISGAKFVIVDPD-------------------- 87

Query: 145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE 204
                                     DPA ++YTSGTTG PKG   + +        L+ 
Sbjct: 88  --------------------------DPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSH 121

Query: 205 AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGN 264
                  D+   C+PL+H    F  L   L +G T+    KFS    W+  R+S      
Sbjct: 122 DLNLQFPDRTYTCMPLYHGTAAFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQ 181

Query: 265 RAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWE 324
             GE        P         Y+               ++R +  G+   P      WE
Sbjct: 182 YVGELCRYLLATP------PSPYDRD------------HKVR-VAYGNGLRP----DIWE 218

Query: 325 TITGHRLLERYGM---------TEFVMAISNPLRGARKAGTVGN-------PLPGVQVKI 368
                R  ER+ +         TE V A +N   G   AG +G         L      +
Sbjct: 219 -----RFRERFNVPEIGEFYAATEGVFAFTNHNVGPFTAGAIGFSGLIRRWFLENQVFLV 273

Query: 369 AEDESGSDA-----------AGVGE-------ICVKSPSLFKEYWKLPKVTKDSFTADGF 410
             D                 A VGE       +  K+  LF+ Y K    T+     D F
Sbjct: 274 KMDPETDMPIRDPKTGFCVRAPVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVF 333

Query: 411 ------FKTGDTGKQDEDGYYIILGRKGIYF 435
                 ++TGD  +QD DG +  L R G  F
Sbjct: 334 RKGDIWYRTGDLLRQDADGRWYFLDRLGDTF 364

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 75.7 bits (187), Expect = 1e-14
 Identities = 101/453 (22%), Positives = 157/453 (34%), Gaps = 92/453 (20%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+  + +S SY +L + A R +    +  +                 G G  + ++ 
Sbjct: 52  DRPALLFEDQSISYAELNARANRYAHWAAARGV-----------------GKGDVVALLM 94

Query: 76  KPSFEFVAGVLGTWFSGCIAV---------PLALSYPESELLHVMHDSDISMVL-STEDY 125
           +   E++A  LG    G +            LA S    +  H++   ++          
Sbjct: 95  ENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARAD 154

Query: 126 REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKP 185
                 +    G          ++++       +      G   +D A  +YTSGTTG P
Sbjct: 155 LARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLP 214

Query: 186 KGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK 245
           K  V +H      +         T  D    CLPL+H  G   A  + L AGAT+    K
Sbjct: 215 KAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRK 274

Query: 246 FSVRGIW---QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS-A 301
           FS    W   +R+R              TAF  +  +   L+          Q    +  
Sbjct: 275 FSASRFWDDVRRYR-------------ATAFQYIGELCRYLLN---------QPPKPTDR 312

Query: 302 AKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEFVMAISNPLRGARKAGTVGN- 359
             +LRL M G+   P  +  +++   G  R+LE Y  +E  +   N        GTVG  
Sbjct: 313 DHRLRL-MIGNGLRP-DIWDEFQQRFGIPRILEFYAASEGNVGFINVF---NFDGTVGRV 367

Query: 360 PLPGVQ----VKIAEDESGS---DAAG-------------VGEICVKSPSLFKEYW---- 395
           PL        VK   D +G    DA G             +G I  + P  F  Y     
Sbjct: 368 PLWLAHPYAIVKYDVD-TGEPVRDADGRCIKVKPGEVGLLIGRITDRGP--FDGYTDPEA 424

Query: 396 --KLPKVTKDSFTA-DGFFKTGDTGKQDEDGYY 425
             K  K+ +D F   D +F TGD  + D  G+ 
Sbjct: 425 SEK--KILRDVFKKGDAWFNTGDLMRDDGFGHA 455

Length = 600

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 73.6 bits (181), Expect = 4e-14
 Identities = 93/383 (24%), Positives = 145/383 (37%), Gaps = 48/383 (12%)

Query: 63  LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST 122
           L  G    +GI+ +    FV  +L     G   + L  S+    L  V+    +  V+  
Sbjct: 88  LPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYD 147

Query: 123 EDYREVL-QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGT 181
           E++   + + +A    A   +     +      V   + A +     G    +I+ TSGT
Sbjct: 148 EEFSATVDRALADCPQATRIVAWTDEDHDLTVEVLIAAHAGQRPEPTGRKGRVILLTSGT 207

Query: 182 TGKPKGVVH-------THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           TG PKG          T K+I  +     E      A       P+ H  G    +LA  
Sbjct: 208 TGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVA-------PMFHAWGFSQLVLAAS 260

Query: 235 YAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD 291
            A   V    F P+ ++  I          + +RA    T    VP M+ R+      MD
Sbjct: 261 LACTIVTRRRFDPEATLDLI----------DRHRA----TGLAVVPVMFDRI------MD 300

Query: 292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVM-AISNP--L 348
              +  +  + + LR      S +   V+  +    G  +   Y  TE  M A + P  L
Sbjct: 301 LPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADL 360

Query: 349 RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTA 407
           R A    T G P  G +++I + +      G VG I V++ + F  Y      TKD    
Sbjct: 361 RAA--PDTAGRPAEGTEIRILDQDFREVPTGEVGTIFVRNDTQFDGY--TSGSTKD--FH 414

Query: 408 DGFFKTGDTGKQDEDGYYIILGR 430
           DGF  +GD G  DE+G   ++GR
Sbjct: 415 DGFMASGDVGYLDENGRLFVVGR 437

Length = 537

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 73.6 bits (181), Expect = 5e-14
 Identities = 84/375 (22%), Positives = 145/375 (38%), Gaps = 54/375 (14%)

Query: 77  PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKS 136
           P F  + G      SG + V L  +   + L   +  +D  +VL+   + E+L       
Sbjct: 65  PEFSLLLGAAA--LSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLD------ 116

Query: 137 GAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ------RGEDPALIVYTSGTTGKPKGVVH 190
                L P V  ++ ++  +    A   D +        +D  ++++TSGT+G PK V  
Sbjct: 117 ----GLDPGVRVINVDSPAWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRC 172

Query: 191 THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG 250
           TH+ + +   ML + +     D     +PL H + +       L AGA++    KFS  G
Sbjct: 173 THRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASG 232

Query: 251 IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310
                R        R G     + G P  Y  ++   E  D         A   LR++  
Sbjct: 233 FLPDVR--------RYGATYANYVGKPLSY--VLATPERPD--------DADNPLRIVY- 273

Query: 311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV---- 366
           G+   P   + ++    G  +++ +G TE  +AI+         G +G   PGV +    
Sbjct: 274 GNEGAP-GDIARFARRFGCVVVDGFGSTEGGVAITR--TPDTPPGALGPLPPGVAIVDPD 330

Query: 367 --------KIAEDESGSDAAGVGEIC-VKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTG 417
                   + A+    +    +GE+     P  F+ Y+  P+   +     G + +GD  
Sbjct: 331 TGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLA 389

Query: 418 KQDEDGYYIILGRKG 432
            +D DGY    GR G
Sbjct: 390 YRDADGYAYFAGRLG 404

Length = 529

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 74.0 bits (182), Expect = 6e-14
 Identities = 98/384 (25%), Positives = 157/384 (40%), Gaps = 57/384 (14%)

Query: 70   RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
            R+G+  + S E V G+L    +G   VPL   YP   L +++ DS I ++LS     E L
Sbjct: 2240 RVGLALERSLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLSDRALFEAL 2299

Query: 130  QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
              + +   A++ L      +++    +  +    +   + +  A ++YTSG+TGKPKGVV
Sbjct: 2300 GELPA-GVARWCLEDDAAALAA----YSDAPLPFLSLPQHQ--AYLIYTSGSTGKPKGVV 2352

Query: 190  HTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMP- 244
             +H  I    Q + E +   + D  LH   ++     F+A    LL PL  GA V     
Sbjct: 2353 VSHGEIAMHCQAVIERFGMRADDCELHFYSIN-----FDAASERLLVPLLCGARVVLRAQ 2407

Query: 245  -KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK 303
             ++    I Q  RE   V+       I  FT  P+  ++L Q       +L         
Sbjct: 2408 GQWGAEEICQLIRE-QQVS-------ILGFT--PSYGSQLAQWLAGQGEQL--------- 2448

Query: 304  QLRLMMCGSSALPLPVMQQWETITG----HRLLERYGMTE-FVMAISNPLRGARKAGTVG 358
             +R+ + G  AL     +  + I            YG TE  VM ++       + G   
Sbjct: 2449 PVRMCITGGEAL---TGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEGAAS 2505

Query: 359  NPLP---GVQVK--IAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGF--- 410
             P+    G +V   +  D +       GE+ V    L + Y   P +T + F AD F   
Sbjct: 2506 VPIGRVVGARVAYILDADLALVPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAAD 2565

Query: 411  ----FKTGDTGKQDEDGYYIILGR 430
                ++TGD  +   DG    +GR
Sbjct: 2566 GGRLYRTGDLVRLRADGLVEYVGR 2589

Length = 4334

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 73.1 bits (180), Expect = 8e-14
 Identities = 78/274 (28%), Positives = 110/274 (40%), Gaps = 45/274 (16%)

Query: 177 YTSGTTGKPKGVVHTHKS--IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PKGVV+ H+   ++A   +L  AW       +L  LP+ H +G         
Sbjct: 189 YTSGTTGNPKGVVYHHRGAYLNALSNIL--AWGMPKHPVYLWTLPMFHCNGWCFPWTVAA 246

Query: 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL 294
            AG  V  + K   + I+   RE            +T + G P + + LI          
Sbjct: 247 RAGTNV-CLRKVDPKLIFDLIRE----------HGVTHYCGAPIVLSALINAPAEW---- 291

Query: 295 QAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF------------VM 342
               A     +  M+ G +A P  V+ + E I G  L   YG+TE               
Sbjct: 292 ---RAGIDHPVHAMVAG-AAPPAAVIAKMEEI-GFDLTHVYGLTETYGPATVCAWQPEWD 346

Query: 343 AISNPLRGARKA--GTVGNPLPGVQVKIAEDESGS----DAAGVGEICVKSPSLFKEYWK 396
           A+    R   KA  G       GV V   + ++      D   +GEI  +   + K Y K
Sbjct: 347 ALPLDERAQLKARQGVRYPLQEGVTV--LDPDTMQPVPADGETIGEIMFRGNIVMKGYLK 404

Query: 397 LPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
            PK T+++F A G+F TGD      DGY  I  R
Sbjct: 405 NPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDR 437

Length = 545

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 93/435 (21%), Positives = 165/435 (37%), Gaps = 69/435 (15%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D+ A+   +  +SY ++    + +++LL    +K                        VA
Sbjct: 473 DAPALADARYQFSYREMREQVVALANLLRERGVKP------------------GDSVAVA 514

Query: 76  KP-SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
            P S      +     +G   +PL   YP+  L  ++ D+  S++++T D      +V  
Sbjct: 515 LPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVPD 574

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
            +   ++                   A  +   +    A I++TSG+TG+PKGV+    +
Sbjct: 575 LTSLCYNAPLAPQ------------GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTA 622

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLH---HVHGLFNALLAPLYAGATVEFMPKFSVRGI 251
           I  ++  +   +  T+ D  L   P      V   F     P  AGA +      + R  
Sbjct: 623 IVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFF----WPFIAGAKLVMAEPEAHRD- 677

Query: 252 WQRWRESYPVNGNR--AGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309
                   P+   +  A   +T    VP+M    +    ++  E    +  +   LR + 
Sbjct: 678 --------PLAMQQFFAEYGVTTTHFVPSMLAAFVA---SLTPE---GARQSCASLRQVF 723

Query: 310 CGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISN-PLRGARKAGTVGNPLP------ 362
           C   ALP  + ++W+ +TG  L   YG TE  + +S  P  G   A   G+ +P      
Sbjct: 724 CSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVW 783

Query: 363 GVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGF------FKTGD 415
              ++I +        GV G++ +    L + Y   P +T   F AD F      ++TGD
Sbjct: 784 NTGLRILDARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGD 843

Query: 416 TGKQDEDGYYIILGR 430
             +  +DG    LGR
Sbjct: 844 VARWLDDGAVEYLGR 858

Length = 1296

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 71.9 bits (177), Expect = 1e-13
 Identities = 70/288 (24%), Positives = 108/288 (37%), Gaps = 77/288 (26%)

Query: 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHC---LPLHH 222
               E   +++ T G++G+ +  +HT +++ A VQ       Y    Q ++    LPL+H
Sbjct: 116 LPNLETGWIMIPTGGSSGQIRFAIHTWETLTASVQGFQR---YFQLQQ-VNSFCVLPLYH 171

Query: 223 VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWR--ESYPVNGNRAGEAITAFTGVPTMY 280
           V GL   + + L  G       K  +      ++  +S         +   +   VPT  
Sbjct: 172 VSGLMQFMRSFLTGG-------KLVI----LPYKRLKSGQELPPNPSDFFLSL--VPTQL 218

Query: 281 TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLER------ 334
            RL          LQ      A Q R ++ G +    P    W +     LLE+      
Sbjct: 219 QRL----------LQLRPQWLA-QFRTILLGGA----PA---WPS-----LLEQARQLQL 255

Query: 335 -----YGMTEFVMAISN--P---LRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEIC 384
                YGMTE    I+   P   L G     + G  LP  Q+ I  ++        G I 
Sbjct: 256 RLAPTYGMTETASQIATLKPDDFLAGNN---SSGQVLPHAQITIPANQ-------TGNIT 305

Query: 385 VKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKG 432
           +++ SL   Y+  P        + G F+T D G  D  GY  ILGR  
Sbjct: 306 IQAQSLALGYY--P----QILDSQGIFETDDLGYLDAQGYLHILGRNS 347

Length = 452

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 72.3 bits (178), Expect = 2e-13
 Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 6/130 (4%)

Query: 305 LRLMMCGSSALPL-PVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPG 363
           +R M+ G    PL    Q++  +    +++ +G+TE V        G  +   VG  L G
Sbjct: 430 VRAMLSGGG--PLSAATQEFVNVVFGMVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKG 487

Query: 364 VQVKI--AEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQD 420
           V++K+   E+   +D     GEI ++ P LFK Y+K  ++T++    DG+F TGD G   
Sbjct: 488 VEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIA 547

Query: 421 EDGYYIILGR 430
            +G   I+GR
Sbjct: 548 ANGTLRIIGR 557

Length = 700

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 76/280 (27%), Positives = 111/280 (39%), Gaps = 34/280 (12%)

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT----SADQFLHCLPLHHVH 224
             DP  I+YTSGTTGKPKGVV   +        L  +          D F     +  V 
Sbjct: 219 STDPLYILYTSGTTGKPKGVV---RDTGGYAVALKWSMRNIYGIKPGDVFWAASDVGWVV 275

Query: 225 GLFNALLAPLYAGATVEFMPKFSVR----GIWQRWRESYPVNGNRAGEAITAFTGVPTMY 280
           G    +  PL  GAT        V     G + R  E Y VN          FT  PT  
Sbjct: 276 GHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVN--------ALFT-APTAI 326

Query: 281 TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF 340
            R I+  +     ++    S+   LR +      L  P ++  E   G  +++ +  TE 
Sbjct: 327 -RAIRKQDPDGEYIKKYDLSS---LRALFLAGERLDSPTLEWIEKTLGVPVIDHWWQTET 382

Query: 341 VMAISNPLRG----ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVK---SPSLFK 392
              I+    G      K G+ G P+PG  V++ ++       G +G I +K    P    
Sbjct: 383 GWPITANCVGLELLPIKPGSPGKPVPGYDVQVLDETGEELGPGELGNIVIKLPLPPGCLL 442

Query: 393 EYWKLPKVTKDSFTAD--GFFKTGDTGKQDEDGYYIILGR 430
             W   +  K  +     G++ TGD+G +DEDGY  ++GR
Sbjct: 443 TLWGDDERFKKLYLNKFPGYYDTGDSGYKDEDGYLFVMGR 482

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 71.6 bits (175), Expect = 2e-13
 Identities = 83/315 (26%), Positives = 130/315 (41%), Gaps = 66/315 (20%)

Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSI----DAQVQMLTEAWE-YTSADQFLHCLPLH 221
           ++  D   I+YTSGTTG PKGV+ +++SI       +++L  A    T  D +L  LPL 
Sbjct: 220 KKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLA 279

Query: 222 HVHGLFNALLAPLY--AGATVEFMPKFSVRGIWQRWRESYPVNGNRAGE-AITAFTGVPT 278
           H+   F+ ++   +   GA + F            WR    +     GE   T F  VP 
Sbjct: 280 HI---FDRVIEECFIQHGAAIGF------------WRGDVKLLIEDLGELKPTIFCAVPR 324

Query: 279 MYTRLIQGYE------------AMDTELQ-------------AASA-------SAAKQ-- 304
           +  R+  G +              D+                 AS        +  KQ  
Sbjct: 325 VLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGL 384

Query: 305 ---LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKA-GTVGNP 360
              +R+++ G++ L   V      +    +L+ YG+TE        L       GTVG P
Sbjct: 385 GGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPP 444

Query: 361 LPGVQVKIAE-DESGSDAAGV---GEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDT 416
           +P V +++    E   DA      GEIC++  +LF  Y+K   +TK+    DG+  TGD 
Sbjct: 445 VPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLI-DGWLHTGDV 503

Query: 417 GKQDEDGYYIILGRK 431
           G+   +G   I+ RK
Sbjct: 504 GEWQPNGSMKIIDRK 518

Length = 666

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 70.2 bits (172), Expect = 6e-13
 Identities = 68/278 (24%), Positives = 113/278 (40%), Gaps = 38/278 (13%)

Query: 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
            +  ED A+I++TSGT   PKGV  TH ++ A  +   + +     D  +  LP  H +G
Sbjct: 179 DKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYG 238

Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESY-PVNGNRAGEAI-----TAFTGVPTM 279
             +  L PL +G  V F               +Y P+   +  E I     T     P  
Sbjct: 239 FNSCTLFPLLSGVPVVF---------------AYNPLYPKKIVEMIDEAKVTFLGSTPVF 283

Query: 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMT 338
           +  +++  +  ++ L +        LR ++ G  A    + Q+      H +L + YG T
Sbjct: 284 FDYILKTAKKQESCLPS--------LRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTT 335

Query: 339 EFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG--VGEICVKSPSLFKEYW 395
           E    I+ N +   +    VG P+ G+ V I  +E+    +    G +  +  SLF  Y 
Sbjct: 336 ECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGY- 394

Query: 396 KLPKVTKDSFT---ADGFFKTGDTGKQDEDGYYIILGR 430
            L +     F     + ++ TGD G  D  G   + GR
Sbjct: 395 -LGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGR 431

Length = 539

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 69.7 bits (171), Expect = 8e-13
 Identities = 79/309 (25%), Positives = 114/309 (36%), Gaps = 66/309 (21%)

Query: 149 VSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH--THKSIDAQV---QMLT 203
           V     V         D   G D   ++Y+SGTTG+PKG+      +  D  +     L 
Sbjct: 136 VGYAEAVAGLPATPIADESLGTD---MLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQ 192

Query: 204 EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA-------GATVEFMPKF----SVRGIW 252
             W + S   +L   PL+H         AP  A       G TV  M  F     +  I 
Sbjct: 193 RLWGFRSDMVYLSPAPLYHS--------APQRAVMLVIRLGGTVIVMEHFDAEQYLALI- 243

Query: 253 QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312
           + +              +T    VPTM++R+++  E +  +   +S   A          
Sbjct: 244 EEYG-------------VTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIH-------- 282

Query: 313 SALPLPV-----MQQWETITGHRLLERYGMTE--FVMAISNPLRGARKAGTVGNPLPGVQ 365
           +A P P      M  W    G  + E Y  TE     A  +    A   GTVG  + G  
Sbjct: 283 AAAPCPPQVKEQMIDW---WGPIIHEYYAATEGLGFTACDSEEWLAHP-GTVGRAMFGD- 337

Query: 366 VKIAEDESGSD--AAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKT-GDTGKQDED 422
           + I  D+ G++      G I  +    F EY   P  T ++   DG + T GD G  DED
Sbjct: 338 LHIL-DDDGAELPPGEPGTIWFEGGRPF-EYLNDPAKTAEARHPDGTWSTVGDIGYVDED 395

Query: 423 GYYIILGRK 431
           GY  +  R 
Sbjct: 396 GYLYLTDRA 404

Length = 511

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 103/442 (23%), Positives = 173/442 (39%), Gaps = 62/442 (14%)

Query: 8   YKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGC 67
             + +   D++AI    + +SY +L     R  +L                    L    
Sbjct: 30  RDQAARYPDAIAIICGNRQWSYRELDQ---RADNLAA--------------GLTKLGIKQ 72

Query: 68  GARIGIVAKPSF-EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL-----S 121
           G    +V  P+  EF          G   V    S+ +SEL       + ++ +     S
Sbjct: 73  GDTA-VVQLPNIAEFYIVFFALLKLGVAPVLALFSHRKSELTAYASQIEPALYIIDRAHS 131

Query: 122 TEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFD--QSQAEKMDGQ--RGEDPALIVY 177
             DY +  + + SK     ++I  V   + E  +F   +S AE +     + ++ A    
Sbjct: 132 LFDYDDFARQLQSKLPTLRNII--VAGQTGEAELFLWLESPAEPVKFPPTKSDEVAFFQL 189

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLAPLYA 236
           + G+TG PK +  TH      V+   E    T   ++L  LP  H + L +   L   YA
Sbjct: 190 SGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYA 249

Query: 237 GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296
           G  V   P  S         + +P+   R    +TA   VP           A+   +QA
Sbjct: 250 GGCVVLAPDPSPT-------DCFPLI-ERHKVTVTAL--VPP----------AVALWMQA 289

Query: 297 ASASAA--KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR----G 350
           AS S A    L+L+  G +       ++   + G +L + +GM E    + N  R     
Sbjct: 290 ASKSRADLSSLKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAE---GLVNYTRLDDPA 346

Query: 351 ARKAGTVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTAD 408
                T G P+ P  +V++ +D     A G  G +  + P  F+ Y+K P+    +F A+
Sbjct: 347 EIIFTTQGRPMSPDDEVRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAE 406

Query: 409 GFFKTGDTGKQDEDGYYIILGR 430
           GF+ TGD  +   +GY +++GR
Sbjct: 407 GFYYTGDLVRLTPEGYIVVVGR 428

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 86/301 (28%), Positives = 118/301 (39%), Gaps = 89/301 (29%)

Query: 157 DQSQAEKM-DGQRGEDP-----ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS 210
           D+ +A  + D  R  +P     AL+V TSGTTG PKG             MLT A    S
Sbjct: 16  DERRAALLRDALRVGEPIDDDVALVVATSGTTGTPKGA------------MLTAAALTAS 63

Query: 211 AD----------QFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYP 260
           AD          Q+L  LP HH+ GL   L+  + AG+                     P
Sbjct: 64  ADATHDRLGGPGQWLLALPAHHIAGL-QVLVRSVIAGSE--------------------P 102

Query: 261 VNGN-RAGEAITAFTGV------PTMYTRL--IQGYEAMDTELQAASASAAKQLRLMMCG 311
           V  +  AG   TA             YT L  +Q  +A+D     A+ +A  +L  ++ G
Sbjct: 103 VELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDD---PAATAALAELDAVLVG 159

Query: 312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTV--GNPLPGVQVKIA 369
               P PV+       G  ++  YGM+E               G V  G PL GV+V++ 
Sbjct: 160 GGPAPAPVLDAAAAA-GINVVRTYGMSE------------TSGGCVYDGVPLDGVRVRVE 206

Query: 370 EDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILG 429
           +          G I +  P+L K Y        D F   G+F+T D G  D DG   +LG
Sbjct: 207 D----------GRIALGGPTLAKGYRNPV--DPDPFAEPGWFRTDDLGALD-DGVLTVLG 253

Query: 430 R 430
           R
Sbjct: 254 R 254

Length = 358

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 67.5 bits (165), Expect = 4e-12
 Identities = 89/447 (19%), Positives = 158/447 (35%), Gaps = 99/447 (22%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
            ++A R   +  +Y QL   + R+++ +    L         + S ++  G         
Sbjct: 15  QTIAYRYQGQELTYQQLKEQSDRLAAFIQKRIL--------PKKSPIIVYG--------- 57

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
                 +   LG+  SG   +P+  S P   +  ++  +   +V+ T             
Sbjct: 58  HMEPHMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTA------------ 105

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ----------RGEDPALIVYTSGTTGKP 185
                     +   +  T +   S  E+ +            +G+D   I+YTSG+TG P
Sbjct: 106 ---------ELSIDAVGTQIITLSALEQAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNP 156

Query: 186 KGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP-LYAGATVEFMP 244
           KGV  +H ++ +    +   +  +   QFL+  P      + +  L P L +G T+  + 
Sbjct: 157 KGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMD--LYPCLASGGTLHCLD 214

Query: 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ 304
           K         + E            +  +   P+           +D  L   + +    
Sbjct: 215 KDITNNFKLLFEELPKTG-------LNVWVSTPSF----------VDMCLLDPNFNQENY 257

Query: 305 LRL---MMCGSSALPLPVMQQWETITGHRLLER---------YGMTEFV-----MAISNP 347
             L   + CG     LPV       T   LLER         YG TE       + I+  
Sbjct: 258 PHLTHFLFCGEE---LPVK------TAKALLERFPKATIYNTYGPTEATVAVTSVKITQE 308

Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSF- 405
           +        +G   P + + I ++E      G  GEI +  PS+ K Y   P+ T ++F 
Sbjct: 309 ILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFF 368

Query: 406 TADGF--FKTGDTGKQDEDGYYIILGR 430
           + +G   ++TGD G    DG     GR
Sbjct: 369 SHEGQPAYRTGDAGTI-TDGQLFYQGR 394

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 67.0 bits (163), Expect = 6e-12
 Identities = 71/280 (25%), Positives = 112/280 (40%), Gaps = 37/280 (13%)

Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL 226
           Q   DP  + YTSGTT  PKGVV +H+            WE  +   +L  LP+ H +G 
Sbjct: 183 QDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGW 242

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
                     G +V  M   +   I++          N     +T    VPT++  L++G
Sbjct: 243 TFTWGTAARGGTSV-CMRHVTAPEIYK----------NIEMHNVTHMCCVPTVFNILLKG 291

Query: 287 YEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAI-- 344
                  L  +  S    +   + G S  P  ++++ + + G +++  YG+TE    +  
Sbjct: 292 -----NSLDLSPRSGPVHV---LTGGSPPPAALVKKVQRL-GFQVMHAYGLTEATGPVLF 342

Query: 345 ------------SNPLRGARKAGTVGNPLPGVQVKIAEDESGS--DAAGVGEICVKSPSL 390
                       +  +    + G     L  V VK  E +     D   +GEI +K  S+
Sbjct: 343 CEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSI 402

Query: 391 FKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
            K Y K PK T ++F   G+  TGD G    DG+  I  R
Sbjct: 403 MKGYLKNPKATSEAFK-HGWLNTGDVGVIHPDGHVEIKDR 441

Length = 579

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 66.9 bits (163), Expect = 7e-12
 Identities = 66/264 (25%), Positives = 120/264 (45%), Gaps = 26/264 (9%)

Query: 177 YTSGTTGKPKGVVHTHKSIDAQV--QMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           ++SGTTG  KGV+ TH+++ A +   + +   E       L  +P  H++G+     A L
Sbjct: 191 FSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATL 250

Query: 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL 294
                V  M +F +R           +N     E ++    VP +   L++     + +L
Sbjct: 251 RNKGKVVVMSRFELRTF---------LNALITQE-VSFAPIVPPIILNLVKNPIVEEFDL 300

Query: 295 QAASASAAKQLRLMMCGSSALPLPVMQQWET-ITGHRLLERYGMTE---FVMAISNPLRG 350
                 +  +L+ +M  ++ L   ++  +E    G ++ E YG+TE     +   +P +G
Sbjct: 301 ------SKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKG 354

Query: 351 A--RKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKVTKDSFT 406
               K  +VG  LP ++VK  + ++G        GE+CV+S  + + Y+   + T  +  
Sbjct: 355 HGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTID 414

Query: 407 ADGFFKTGDTGKQDEDGYYIILGR 430
            DG+  TGD G  D+DG   I+ R
Sbjct: 415 EDGWLHTGDIGYIDDDGDIFIVDR 438

Length = 546

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 66.4 bits (163), Expect = 1e-11
 Identities = 63/269 (23%), Positives = 105/269 (39%), Gaps = 55/269 (20%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D VA+    +  +Y +L   A R++  L +  L                 G G  +GI A
Sbjct: 18  DRVALVCGDRRLTYAELEERANRLAHYLIAQGL-----------------GPGDHVGIYA 60

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           +   E+V  +LG + +  + V +   Y E EL +++ DSD   ++   ++   +  V  +
Sbjct: 61  RNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPR 120

Query: 136 -------------SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTT 182
                        SG           V  E  +   S  E+  G+R  D   ++YT GTT
Sbjct: 121 LPKLRTLVVVEDGSGND----LLPGAVDYEDALAAGS-PERDFGERSPDDLYLLYTGGTT 175

Query: 183 GKPKGVVHTHKSIDAQVQMLTEAW--------EYTSADQ--------FLHCLPLHHVHGL 226
           G PKGV+   + I  +V +    +        E   A +             PL H  G 
Sbjct: 176 GMPKGVMWRQEDI-FRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQ 234

Query: 227 FNALLAPLYAGATVEFMP--KFSVRGIWQ 253
           + A  A L++G TV  +P  +F    +W+
Sbjct: 235 WAAFAA-LFSGQTVVLLPDVRFDADEVWR 262

Length = 533

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 51/199 (25%), Positives = 81/199 (40%), Gaps = 35/199 (17%)

Query: 65  GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLH------VMHDSDISM 118
           G  G R  I+A    E++   LG   +G IAVPL++    +   H      V+ D+  S+
Sbjct: 56  GSTGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQGGA---HDERVSAVLRDTSPSV 112

Query: 119 VLSTE-DYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVY 177
           VL+T     +V + VA + G      PPV  +  +    D  +      +     A + Y
Sbjct: 113 VLTTSAVVDDVTEYVAPQPGQS---APPV--IEVDLLDLDSPRGSDARPRDLPSTAYLQY 167

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHC-------------LPLHHVH 224
           TSG+T  P GV+ +H+++ A  + L        +D F                LP +H  
Sbjct: 168 TSGSTRTPAGVMVSHRNVIANFEQLM-------SDYFGDTGGVPPPDTTVVSWLPFYHDM 220

Query: 225 GLFNALLAPLYAGATVEFM 243
           GL   + AP+  G      
Sbjct: 221 GLVLGVCAPILGGCPAVLT 239

Length = 578

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 80/278 (28%), Positives = 117/278 (42%), Gaps = 35/278 (12%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
           EDP  ++YTSG+TGKPKGV+HT    +         A++Y   D +        + G   
Sbjct: 275 EDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSY 334

Query: 229 ALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
               P+  GATV   E  P +   G      + Y V         T F   PT+   L  
Sbjct: 335 VTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKV---------TIFYTAPTLVRSL-- 383

Query: 286 GYEAMDTELQAASASAAKQLRLMMCGSSALPL-PVMQQW--ETITGHR--LLERYGMTEF 340
               M    +  +  + K LR++  GS   P+ P   +W    +   R  + + +  TE 
Sbjct: 384 ----MRDGDEYVTRHSRKSLRVL--GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTET 437

Query: 341 VMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESGSDAAG--VGEICVKS--PSLFKE- 393
              +  PL GA  +K G+   P  GVQ  I  DE G +  G   G +CVK   P  F+  
Sbjct: 438 GGFMITPLPGAWPQKPGSATFPFFGVQPVIV-DEKGKEIEGECSGYLCVKKSWPGAFRTL 496

Query: 394 YWKLPKVTKDSFTA-DGFFKTGDTGKQDEDGYYIILGR 430
           Y    +     F    G++ +GD   +D+DGYY + GR
Sbjct: 497 YGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGR 534

Length = 666

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 60/213 (28%), Positives = 91/213 (42%), Gaps = 18/213 (8%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYP-ESELLH-VMHDSDISMVLST-- 122
           G R+ I+A  + +++    G  ++G IAVPL   + P     LH V+ D   S +L+T  
Sbjct: 79  GDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTD 138

Query: 123 --EDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSG 180
             E  R+  +   +K   +   +  VP+    T V    +A +      +  A + YTSG
Sbjct: 139 SAEGVRKFFRARPAKERPRVIAVDAVPDEVGATWV--PPEANE------DTIAYLQYTSG 190

Query: 181 TTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240
           +T  P GV  TH ++   V  + +A E    D+ +  LP  H  GL   LL  L  G  +
Sbjct: 191 STRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLPAL-LGHYI 249

Query: 241 EFM-PKFSVRGIWQRWRESYPVNGNRAGEAITA 272
            FM P   VR    RW           G   +A
Sbjct: 250 TFMSPAAFVRRPG-RWIRELARKPGGTGGTFSA 281

Length = 631

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 61.1 bits (149), Expect = 4e-10
 Identities = 38/179 (21%), Positives = 67/179 (37%), Gaps = 63/179 (35%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D++A+    +S +Y +L   A R+++ L                      G  +R+G+  
Sbjct: 14  DAIAVVCGDESLTYAELNRRANRLAARL-----------------RAAGVGPESRVGVCL 56

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           + S + V  +L    +G   VPL  +YP   L +++ D+   +VL+  D           
Sbjct: 57  RRSPDLVVALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLTDPD----------- 105

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
                                              D A ++YTSG+TG+PKGV   H++
Sbjct: 106 -----------------------------------DLAYVIYTSGSTGRPKGVAIEHRN 129

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 64/277 (23%), Positives = 102/277 (36%), Gaps = 65/277 (23%)

Query: 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH 221
            +      E+P+L+ Y+SGTTG+PK +  +   ID +++   EA      +  +   P+ 
Sbjct: 93  LEAVNYLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVT 152

Query: 222 HVHGLFNALLAPLYAGATVEFM----PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVP 277
           H +GL   +LA L  G+    +    PKF         R   P +             VP
Sbjct: 153 HSYGLICGVLAALTRGSKPVIITNKNPKF----ALNILRN-TPQH---------ILYAVP 198

Query: 278 TMY---TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLER 334
            M     RL+ G                 Q   +M   + LP     +    T + ++++
Sbjct: 199 LMLHILGRLLPGTF---------------QFHAVMTSGTPLPEAWFYKLRERTTY-MMQQ 242

Query: 335 YGMTEF-VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKE 393
           YG +E   ++I   +   +    +GNPLP V V    DE+  +     EI VK       
Sbjct: 243 YGCSEAGCVSICPDM---KSHLDLGNPLPHVSVSAGSDENAPE-----EIVVK------- 287

Query: 394 YWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
                         D    T D G + E G    +GR
Sbjct: 288 ------------MGDKEIFTKDLGYKSERGTLHFMGR 312

Length = 414

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 92/401 (22%), Positives = 148/401 (36%), Gaps = 80/401 (19%)

Query: 71  IGIVAKPSFEFVAGVLGTWFSGCIAVPL--------ALSYPESELLHVMHDSDISMVLST 122
           +G+V +P+ E VA + G W +G  AV +                 L       +  VLS 
Sbjct: 57  VGLVGEPTVELVAAIQGAWLAG-AAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSH 115

Query: 123 EDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTT 182
             + E L+ V S              V    T    +++  +       PA++  T+G+T
Sbjct: 116 GSHLERLRAVDSSV-----------TVHDLATAAHTNRSASLTPPDSGGPAVLQGTAGST 164

Query: 183 GKPKGVVHTHKSIDAQVQMLTEAWEYTS----ADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           G P+  +    S  A +  L             D     LPL+H  GL   LL    AGA
Sbjct: 165 GTPRTAI---LSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGL-AFLLTAALAGA 220

Query: 239 TVEFMPK--FSVRGI-WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY--EAMDTE 293
            +   P   FS     W  W     ++ +RA       T  P     LI  Y     D +
Sbjct: 221 PLWLAPTTAFSASPFRWLSW-----LSDSRAT-----LTAAPNFAYNLIGKYARRVSDVD 270

Query: 294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH------RLLERYGMTEFVMAISNP 347
           L A        LR+ + G   +     +++ T               YG+ E   A++ P
Sbjct: 271 LGA--------LRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVP 322

Query: 348 L---------------RGARKAGTVGNPLPGVQVKIA--EDESGSDAAGVGEICVKSPSL 390
           +                GAR+   +GNP+PG++V+I+  +  +G     +GEI ++  S+
Sbjct: 323 VPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASM 382

Query: 391 FKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
              Y     + +     D +F TGD G   + G  ++ GR 
Sbjct: 383 MSGY-----LGQAPIDPDDWFPTGDLGYLVDGG-LVVCGRA 417

Length = 525

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 23/117 (19%)

Query: 323 WETITGHRLLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESGSDAAGV 380
           W+T TG             + I+ PL GA   K G+   P  G++  +  DE G+   G 
Sbjct: 394 WQTETGG------------IMIT-PLPGATPTKPGSATLPFFGIEPAVV-DEEGNPVEGP 439

Query: 381 GE---ICVKS--PSLFKEYWKLPKVTKDSF--TADGFFKTGDTGKQDEDGYYIILGR 430
           GE   + +K   P + +  +   +   D++     G++ TGD  ++D+DGY  I GR
Sbjct: 440 GEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGR 496

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 58.8 bits (143), Expect = 3e-09
 Identities = 19/23 (82%), Positives = 22/23 (95%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTH 192
           +DPA+I+YTSGTTGKPKG VHTH
Sbjct: 100 DDPAMIIYTSGTTGKPKGTVHTH 122

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 58.7 bits (143), Expect = 3e-09
 Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 20/115 (17%)

Query: 323 WETITGHRLLERYGMTEFVMAISNPLRGAR--KAGTVGNPLPGVQVKIAEDESGSDAAGV 380
           W+T TG               I+ PL GA   K G+   P PGV+  I ++E      GV
Sbjct: 383 WQTETGG------------HMIT-PLPGATPLKPGSATRPFPGVEPAIVDEEGNEVEGGV 429

Query: 381 -GEICVKS--PSLFKEYWKLPKVTKDSFTAD--GFFKTGDTGKQDEDGYYIILGR 430
            G + +K   P + +  +   +    ++ +   G++ TGD  ++DEDGYY ILGR
Sbjct: 430 EGYLVIKRPWPGMLRTIYGDHERYVKTYFSKFPGYYFTGDGARRDEDGYYWILGR 484

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 335 YGMTEFVMAISNPLRGARKAGTVGNPL-PGVQVKIA--EDESGSDAAGVGEICVKSPSLF 391
           YG+TE    I           ++G P+ P  + K+   E    +D    GE+ +KS S+F
Sbjct: 493 YGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIF 552

Query: 392 KEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR-KGI 433
             Y+   + TK++FT DG+FKTGD  + +++G    L R KG+
Sbjct: 553 SGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGL 595

Length = 746

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 58.0 bits (141), Expect = 4e-09
 Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 28/179 (15%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A     +  +Y QL   +  +++ + S  L         + S ++  G         
Sbjct: 17  DFPAYDYLGEKLTYGQLKEDSDALAAFIDSLKL--------PDKSPIIVFG--------- 59

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S E +A  LG   +G   +P+ +S P   +  ++  +  S++++TE+    +  +   
Sbjct: 60  HMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEILGIPVI 119

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
           +  +      + ++ +    +D   A K     G+D   I++TSGTTGKPKGV  +H +
Sbjct: 120 TLDE------LKDIFATGNPYDFDHAVK-----GDDNYYIIFTSGTTGKPKGVQISHDN 167

Length = 503

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG 225
           G      AL +YTSGTTG PK    +H  +  Q   +      T+ D     LPL+H  G
Sbjct: 138 GVSIRSTALYIYTSGTTGLPKAARISHLRV-LQCSGMLSLCGVTADDVVYTTLPLYHSSG 196

Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIW 252
               ++  +  GAT+   PKFS    W
Sbjct: 197 ALLGIVGCIGLGATLVLKPKFSASQFW 223

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2)

 Score = 57.5 bits (139), Expect = 6e-09
 Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 9/186 (4%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVP--LALSYPESE-----LLHVMHDSDISMVL 120
           G R+ +V     +F+A   G  ++G I VP    LS   S+     L  + H   +++ L
Sbjct: 35  GDRVVLVYPDPEDFIAAFYGCLYAGLIPVPVEPPLSRAGSQQVGALLGSIKHYCGVAVAL 94

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR--GEDPALIVYT 178
           ++E   + L++  +    KF   P +    +E     +   +          D A I Y 
Sbjct: 95  TSEACLKGLRSKTTGEILKFKGWPRLVWFVTEIKTLKKPIKDWNPHLPPANLDTAYIEYK 154

Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           +   G   GV  TH+++    Q L +A +YT     ++ L      G ++  L  +  G 
Sbjct: 155 TSKEGSVMGVTVTHQALLTHCQALKQACQYTEGRTIVNVLDFKKGVGFWHGCLTSVMNGM 214

Query: 239 TVEFMP 244
               +P
Sbjct: 215 HTILIP 220

Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 57.6 bits (139), Expect = 6e-09
 Identities = 78/293 (26%), Positives = 114/293 (38%), Gaps = 65/293 (22%)

Query: 171 DPALIVYTSGTTGKPKGV--------VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH 222
           +P+ I+YTSGTTGKPKGV        V    S+ A   +      ++++D       +  
Sbjct: 233 EPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASD-------VGW 285

Query: 223 VHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM 279
           V G    + APL AGA     E +P     G+W    E Y V         T F+  PT 
Sbjct: 286 VVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVR--------TMFSA-PTA 336

Query: 280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE 339
             R+++  +A    L+    S+   L  +      L  P         G  +++ Y  TE
Sbjct: 337 -IRVLKKQDA--AWLRKHDLSS---LHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTE 390

Query: 340 F---VMAISNPLR-GARKAGTVGNPLPGVQVKIAEDESGSDAAGVGE---ICVKSP---- 388
               V+AI   L     K G+ G P+ G  +++ ++ +G    G  E   + V  P    
Sbjct: 391 TGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPC-GPNEKGVLTVVPPLPPG 449

Query: 389 ----------SLFKEYWKL-PKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
                        K YW    +    SF         D G +DEDGY  ILGR
Sbjct: 450 CLSTVWGDDARFLKTYWSHFKRPLYSSF---------DWGIRDEDGYTFILGR 493

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 73/269 (27%), Positives = 114/269 (42%), Gaps = 48/269 (17%)

Query: 180 GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLAPLYAGA 238
           G+TG PK +  TH      V+   E   +T   ++L  LP  H + + +   L    AG 
Sbjct: 192 GSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGG 251

Query: 239 TVEFMPK------FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDT 292
           TV   P       F +  I     E + VN       +TA   VP           A+  
Sbjct: 252 TVVLAPDPSATLCFPL--I-----EKHQVN-------VTAL--VPP----------AVSL 285

Query: 293 ELQAASASAAKQ----LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL 348
            LQA +   ++     L+L+  G + L   + ++     G +L + +GM E    + N  
Sbjct: 286 WLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAE---GLVNYT 342

Query: 349 R----GARKAGTVGNPL-PGVQVKIAEDESGSD-AAG-VGEICVKSPSLFKEYWKLPKVT 401
           R      R   T G P+ P  +V +A D  G+    G VG +  + P  F+ Y+K P+  
Sbjct: 343 RLDDSDERIFTTQGRPMSPDDEVWVA-DADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHN 401

Query: 402 KDSFTADGFFKTGDTGKQDEDGYYIILGR 430
             +F A+GF+ +GD    D DGY  ++GR
Sbjct: 402 ASAFDANGFYCSGDLVSIDPDGYITVVGR 430

Length = 536

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 77/292 (26%), Positives = 111/292 (38%), Gaps = 54/292 (18%)

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQ----------- 213
           R  D   ++YT GTTG PKGV+   + I  +V +    +   E T  +            
Sbjct: 1   RSADDLYMLYTGGTTGMPKGVMWRQEDI-FRVLLGGPDFATGEPTLEELAKQVAAGGAGT 59

Query: 214 -FLHCLPLHHVHGLFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAI 270
            FL   PL H  G + AL A L+AG TV  +P  KF    +W+       V  +R     
Sbjct: 60  RFLPACPLMHGAGQWLALSA-LFAGGTVVLLPDDKFDPDRVWRT------VEKHRVN--T 110

Query: 271 TAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL--PVMQQW-ETIT 327
               G       L++        L+AA       LR +   SS       V Q   E + 
Sbjct: 111 LVIVG-DAFARPLLE-------ALEAAGRYDLSSLRAIS--SSGAMWSPEVKQGLLELLP 160

Query: 328 GHRLLERYGMTE--FVMAISNPLRGARKAGTVGNPLPGVQVKIAED----ESGSDAAGVG 381
              L++  G +E     +  +   GA   G      P   V + ED      GS    VG
Sbjct: 161 NLALVDALGASETGGGGSSVSRAGGASATGKF-ELGPDTVV-LDEDGSEVPPGSG--EVG 216

Query: 382 EICVKSPSLFKEYWKLPKVTKDSF-TADG--FFKTGDTGKQDEDGYYIILGR 430
            I  +   +   Y+K P+ T  +F   DG  +   GD  + + DG   +LGR
Sbjct: 217 WI-ARGGRVPLGYYKDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLGR 267

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 57.2 bits (139), Expect = 9e-09
 Identities = 21/32 (65%), Positives = 23/32 (71%), Gaps = 3/32 (9%)

Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTH 192
            E MD    EDP  I+YTSG+TGKPKGVVHT 
Sbjct: 219 PEPMDA---EDPLFILYTSGSTGKPKGVVHTT 247

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 57.1 bits (139), Expect = 9e-09
 Identities = 21/35 (60%), Positives = 26/35 (74%), Gaps = 3/35 (8%)

Query: 157 DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
           D+ + E MD    EDP  I+YTSG+TGKPKGV+HT
Sbjct: 235 DECEPEPMDA---EDPLFILYTSGSTGKPKGVLHT 266

Length = 637

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQV----QMLTEAW-EYTSADQFLHCLPLHHV 223
           +D ALI+YTSGTTG PKGV+HTH S+ A +      L +        + +   LPL H+
Sbjct: 264 DDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHI 322

Length = 700

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 71/280 (25%), Positives = 110/280 (39%), Gaps = 56/280 (20%)

Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEA--WEYTSADQFLHCLPLHHVHG-LFNALLAP 233
           YTSGTT  PKGVV  H+   A +  L+ A  W       +L  LP+ H +G  F   LA 
Sbjct: 202 YTSGTTASPKGVVLHHRG--AYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAA 259

Query: 234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE 293
           L  G  +  + + + + I+             A   +T F   P +   ++      +T 
Sbjct: 260 L-CGTNI-CLRQVTAKAIYSAI----------ANYGVTHFCAAPVVLNTIVNA-PKSETI 306

Query: 294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-------------- 339
           L        + + +M  G  A P P +    +  G R+   YG++E              
Sbjct: 307 L-----PLPRVVHVMTAG--AAPPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEW 359

Query: 340 -----FVMAISNPLRGARKAGTVG----NPLPGVQVKIAEDESGSDAAGVGEICVKSPSL 390
                   A  N  +G R  G  G    +      V        +D   +GEI ++   +
Sbjct: 360 DSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVP-------ADGKTMGEIVMRGNMV 412

Query: 391 FKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
            K Y K PK  +++F A+G+F +GD G +  DGY  I  R
Sbjct: 413 MKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDR 451

Length = 567

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 88/402 (21%), Positives = 151/402 (37%), Gaps = 57/402 (14%)

Query: 43  LCSNDLKTTSEKTKNENSAVLAG-GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS 101
           L   +L+  +E           G   G  +G++ +    FV  V      G   VP++  
Sbjct: 61  LSYRELQRATESLARR--LTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPISTE 118

Query: 102 YPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161
           +    L   +    IS V++  ++ E +    + +    ++I P       T   ++S  
Sbjct: 119 FRSDALAAALRAHHISTVVADNEFAERI----AGADDAVAVIDP------ATAGAEESGG 168

Query: 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK---SIDAQVQMLTEAWEYTSADQFLHCL 218
                  G    +++ TSGTTGKPKGV    +   ++   V +L +     +  +    +
Sbjct: 169 RPAVAAPGR---IVLLTSGTTGKPKGVPRAPQLRSAVGVWVTIL-DRTRLRTGSRISVAM 224

Query: 219 PLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278
           P+ H  G    L+  +  G TV     F       +       + +RA     AFT VP 
Sbjct: 225 PMFHGLG-LGMLMLTIALGGTVLTHRHFDAEAALAQ------ASLHRA----DAFTAVPV 273

Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT 338
           +  R+      ++   +  + +   QLR++M     L   + Q++    G  L   YG T
Sbjct: 274 VLARI------LELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGST 327

Query: 339 EF-VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWK 396
           E  + A++ P        TVG P+ G  V+I +  +      V G I V           
Sbjct: 328 EVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRVTGRIFVGG--------- 378

Query: 397 LPKVTKDSFTA-------DGFFKTGDTGKQDEDGYYIILGRK 431
             ++    +T        DG   TGD G  D  G   I+GR+
Sbjct: 379 --ELAGTRYTDGGGKAVVDGMTSTGDMGYLDNAGRLFIVGRE 418

Length = 516

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 55.1 bits (134), Expect = 4e-08
 Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 22/116 (18%)

Query: 323 WETITGHRLLERYGMTEFVMAISNPLRGAR--KAGTVGNPLPGVQVKIAEDESGSDAAGV 380
           W+T TG       G+    M I+ PL GA   K G+   PLPG+Q  +  DE G+   G 
Sbjct: 403 WQTETG-------GI----M-IT-PLPGATPLKPGSATRPLPGIQPAVV-DEEGNPLEGG 448

Query: 381 GE--ICVKS--PSLFKEYWKLPKVTKDSF--TADGFFKTGDTGKQDEDGYYIILGR 430
               + +K   P + +  +   +    ++  T  G + TGD  ++DEDGYY I GR
Sbjct: 449 EGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGR 504

Length = 637

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 54.2 bits (130), Expect = 7e-08
 Identities = 69/274 (25%), Positives = 115/274 (41%), Gaps = 38/274 (13%)

Query: 173 ALIVYTSGTTGKPKGVVHT--HKSIDAQ----VQMLTEAWEYTSADQFLHCLPLHHVH-- 224
           A+++Y+SGTTG PKG+      + +DA     V +    ++ + +D +    P++H    
Sbjct: 151 AVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPL 210

Query: 225 ---GLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT 281
               + +AL      G TV    +F  +       E Y          IT    VPTM+ 
Sbjct: 211 RWCSMVHAL------GGTVVLAKRFDAQATL-GHVERY---------RITVTQMVPTMFV 254

Query: 282 RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-F 340
           RL++    +D +++  +      LR ++  ++  P+ V        G  + E Y  TE  
Sbjct: 255 RLLK----LDADVR--TRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAH 308

Query: 341 VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPK 399
            M   +        G+VG  + G  + I +D+     AG +G +  +   L   Y   P+
Sbjct: 309 GMTFIDSPDWLAHPGSVGRSVLG-DLHICDDDGNELPAGRIGTVYFERDRLPFRYLNDPE 367

Query: 400 VTKDS-FTADGFFKT-GDTGKQDEDGYYIILGRK 431
            T  +   A  F+ T GD G  DEDGY  +  RK
Sbjct: 368 KTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRK 401

Length = 501

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 20/32 (62%), Positives = 24/32 (75%), Gaps = 3/32 (9%)

Query: 160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
           + E MD    EDP  I+YTSG+TGKPKGV+HT
Sbjct: 229 EPEPMDS---EDPLFILYTSGSTGKPKGVLHT 257

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 18/213 (8%)

Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYP-ESELLH-VMHDSDISMVLST-- 122
           G R+ I+A    ++VAG      +G IAVPL A   P  +E L   + D++ ++VL+T  
Sbjct: 92  GDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTA 151

Query: 123 --EDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSG 180
             E     L+N+      +   I  +P+ + E+ V  +           +D + + YTSG
Sbjct: 152 AAEAVEGFLRNLPRLRRPRVIAIDAIPDSAGESFVPVELDT--------DDVSHLQYTSG 203

Query: 181 TTGKPKGVVHTHKSIDAQ-VQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239
           +T  P GV  TH+++    VQM+            +  LPL+H  GL       +Y G +
Sbjct: 204 STRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHS 263

Query: 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITA 272
               P   VR   QRW ++    G+R G  +TA
Sbjct: 264 TLMSPTAFVRRP-QRWIKALS-EGSRTGRVVTA 294

Length = 612

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 50.7 bits (122), Expect = 9e-07
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 7/101 (6%)

Query: 336 GMTEFVMAI--SNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSP--SLF 391
           G TE    I  + P+R   K  +   P PG+   + +++       VGE+ V++P   + 
Sbjct: 257 GGTEISGGILGNVPIR-PIKPCSFNGPSPGMDADVVDEDGRPVRGEVGELVVRAPWPGMT 315

Query: 392 KEYWKLPKVTKDSF--TADGFFKTGDTGKQDEDGYYIILGR 430
           + +W+ P+   +++     G +  GD    DEDGY+ ILGR
Sbjct: 316 RGFWRDPERYLETYWSRFPGVWVHGDWALVDEDGYWYILGR 356

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 9/83 (10%)

Query: 150 SSETTVFDQSQAEKMDGQRGEDP--------ALIVYTSGTTGKPKGVVHTHKSIDAQVQ- 200
           SS  TV   S+ EK+  +   DP        A+I+YTSG+TG PKGV+ TH +I A V  
Sbjct: 222 SSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAG 281

Query: 201 MLTEAWEYTSADQFLHCLPLHHV 223
           ++T   +    D +L  LPL H+
Sbjct: 282 VMTVVPKLGKNDVYLAYLPLAHI 304

Length = 696

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 35/141 (24%)

Query: 124 DYREVLQNVAS--KSGAKFSLIPPV----------PNVSSETTVFDQSQAEKMDGQRGE- 170
           D RE +  +     S     ++P +           +  +        +A  ++ +R   
Sbjct: 176 DRREKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERLPF 235

Query: 171 -DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF-- 227
             P  I+Y+SGTTG PK +VH           L +  +       LHC  L     LF  
Sbjct: 236 DHPLWILYSSGTTGLPKCIVHGAGG------TLLQHLKEHG----LHC-DLRPGDRLFYY 284

Query: 228 --------NALLAPLYAGATV 240
                   N L++ L +GAT+
Sbjct: 285 TTTGWMMWNWLVSGLLSGATL 305

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 349 RGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTA 407
            GA +  ++G PL G Q  + +        GV GE+ +    + + Y   P++T + F  
Sbjct: 262 PGASRTPSIGRPLAGTQAYVLDAHLQPVPVGVPGELYIGGAGVARGYLGRPELTAERFLP 321

Query: 408 DGF--------FKTGDTGKQDEDGYYIILGR 430
           + F        ++TGD  ++  DG    LGR
Sbjct: 322 NPFAGSPGERLYRTGDLVRRRADGQLEYLGR 352

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 48.0 bits (115), Expect = 6e-06
 Identities = 85/308 (27%), Positives = 120/308 (38%), Gaps = 95/308 (30%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQ--------MLTEAWEYT----SADQFLHCL 218
           +P+ I+YTSGTTGKPKG           VQ         L  + +      + + F    
Sbjct: 234 EPSYILYTSGTTGKPKG-----------VQRDTGGYAVALATSMDTIFGGKAGETFFCAS 282

Query: 219 PLHHVHGLFNALLAPLYAG-ATV--EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTG 275
            +  V G    + APL AG AT+  E +P     GIW R  E Y VN          F+ 
Sbjct: 283 DIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVN--------RMFSA 334

Query: 276 VPTMYTRLIQGYEAMDTE-LQAASASAAKQLRLMMCG-----------SSALPLPVMQQ- 322
            PT   R+++     D   L+    S+ + L L   G           S AL +PV+   
Sbjct: 335 -PTA-IRVLKKQ---DPALLRKHDLSSLRALFL--AGEPLDEPTASWISEALGVPVIDNY 387

Query: 323 WETITGHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVKIAEDESGSDAAGVG 381
           W+T TG            ++AI+  +     + G+ G P+ G  VK+  + +G    G  
Sbjct: 388 WQTETGWP----------ILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPC-GPN 436

Query: 382 E--ICVKSPSL---------------FKEYWKL--PKVTKDSFTADGFFKTGDTGKQDED 422
           E  + V    L                K YW L   +V          + T D G +D D
Sbjct: 437 EKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQV----------YSTFDWGIRDAD 486

Query: 423 GYYIILGR 430
           GYY ILGR
Sbjct: 487 GYYFILGR 494

Length = 629

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 71/323 (21%), Positives = 115/323 (35%), Gaps = 65/323 (20%)

Query: 143 IPPVPNVSSETTVFDQSQAEKMDGQR---------GEDPALIVYTSGTTGKPKGVVHTHK 193
           IP +PN  S    +D+ +  K + Q             P  I+YTSGTTG  K VV ++ 
Sbjct: 221 IPTIPNTLSW---YDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNG 277

Query: 194 SIDAQVQMLTEAWEYTSADQFLHCLPLHH------VHGLFNALLA-----PLYAGATVEF 242
                +  L   W           +  H        HG     L+      ++ G  ++ 
Sbjct: 278 P---HLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIK- 333

Query: 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL-QAASASA 301
             K     +W    +            +T    +P     LI+     D E     S   
Sbjct: 334 -NKHIEDDLWNTIEK----------HKVTHTLTLPKTIRYLIK----TDPEATIIRSKYD 378

Query: 302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA-------ISNPLRGARKA 354
              L+ + CG   +   + +  E     +    YG TE  +        I+ P       
Sbjct: 379 LSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYGHINIPYN----- 433

Query: 355 GTVGNPLPGVQVKI-AED--ESGSDAAGVGEICVK---SPSLFKEYWKLPKVTKDSFTA- 407
              G P   ++  I +ED  E   +   +GE+  K    PS    ++K  +  K  F+  
Sbjct: 434 -ATGVPSIFIKPSILSEDGKELNVNE--IGEVAFKLPMPPSFATTFYKNDEKFKQLFSKF 490

Query: 408 DGFFKTGDTGKQDEDGYYIILGR 430
            G++ +GD G +DE+GYY I+ R
Sbjct: 491 PGYYNSGDLGFKDENGYYTIVSR 513

Length = 647

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 25/123 (20%)

Query: 170 EDP---ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVH 224
           EDP     IVYTSGT+GKPKGV+ ++K++   V  L +   ++  +    L  LP+ H++
Sbjct: 301 EDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIY 360

Query: 225 GLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY 280
               A L+    G T+    K    FS + I+           N  G  +    GVP ++
Sbjct: 361 ERVIAYLS-FMLGGTINIWSKDINYFS-KDIY-----------NSKGNIL---AGVPKVF 404

Query: 281 TRL 283
            R+
Sbjct: 405 NRI 407

Length = 746

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 31/94 (32%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 163 KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH 222
             D     D    +YTSGTTG PK  V  H            A+     D    CLPL+H
Sbjct: 97  SQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPEDVVYDCLPLYH 156

Query: 223 ----VHGLFNALLAPLYAGATVEFMPKFSVRGIW 252
               + G+  ALL     G+TV    KFS    W
Sbjct: 157 SAGGIMGVGQALL----HGSTVVIRKKFSASNFW 186

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 44.8 bits (107), Expect = 8e-05
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 171 DPALIVYTSGTTGKPKGVVHTH 192
            P  I+Y+SGTTG PK +VH H
Sbjct: 264 HPLWILYSSGTTGLPKCIVHGH 285

Length = 655

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 71/298 (23%), Positives = 111/298 (37%), Gaps = 86/298 (28%)

Query: 173  ALIVYTSGTTGKPKGVVHTHKSI----------------DAQVQMLTEAWEYTSADQFLH 216
            A ++YTSG+TG PKGV+   + +                D   Q  +++++  S  QF  
Sbjct: 3872 AYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFD-ISVWQF-- 3928

Query: 217  CLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR---GIWQRWRESYPVNGNRAGEAITAF 273
                         L APL+ GA VE +P        G+    +           + IT  
Sbjct: 3929 -------------LAAPLF-GARVEIVPNAIAHDPQGLLAHVQA----------QGITVL 3964

Query: 274  TGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLE 333
              VP+    LIQG  A D         A   LR M+    A+P  + +QW        L+
Sbjct: 3965 ESVPS----LIQGMLAED-------RQALDGLRWMLPTGEAMPPELARQW--------LQ 4005

Query: 334  RYGMTEFVMAISN----------PLRGARKAGT---VGNPLPGVQVKIAEDESGSDAAG- 379
            RY     V A              +  A   G+   +G+P    ++ + ++       G 
Sbjct: 4006 RYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLDEALELVPLGA 4065

Query: 380  VGEICVKSPSLFKEYWKLPKVTKDSFTADGF-------FKTGDTGKQDEDGYYIILGR 430
            VGE+CV    + + Y   P  T  +F    F       ++TGD  ++  DG    +GR
Sbjct: 4066 VGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGR 4123

Length = 4334

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 355 GTVGNPLPGVQVKIAEDESG----SDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADG 409
           G VG PLP   VK+   E G    SD     GEI +  PS+   Y+K  + T + +  D 
Sbjct: 472 GRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDE 531

Query: 410 ----FFKTGDTGKQDEDGYYIILGRK 431
               +F TGD G+   DG   I+ RK
Sbjct: 532 RGMRWFYTGDIGQFHPDGCLEIIDRK 557

Length = 696

>gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive yellow protein activation family

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD--QFLHCL 218
            + +             TSG+TG PK V H+  ++ ++ Q + +          + + C+
Sbjct: 86  VDLIAHHSTPTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCV 145

Query: 219 PLHHVHG-LFNALLAPLYAGATV 240
           P HH++G LF+ LL P   G   
Sbjct: 146 PAHHLYGFLFSCLL-PSRRGLEA 167

This model represents the 4-coumarate--CoA ligase associated with biosynthesis of the 4-hydroxy cinnamyl (also called 4-coumaroyl) chromophore covalently linked to a Cys residue in photoactive yellow protein of Rhodobacter spp. and Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. Length = 386

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	435
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.96
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.95
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.95
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.94
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.88
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.83
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.77
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.72
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.41
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.84
PRK09188	365	serine/threonine protein kinase; Provisional	97.48
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	97.16
PLN02620	612	indole-3-acetic acid-amido synthetase	96.72
PLN02247	606	indole-3-acetic acid-amido synthetase	96.67
PLN02249	597	indole-3-acetic acid-amido synthetase	95.73
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	95.15
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	85.6
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	84.1
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	80.47

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=9.6e-64  Score=481.19  Aligned_cols=391  Identities=30%  Similarity=0.452  Sum_probs=332.7

Q ss_pred             cccCCCe-eEEEeC---CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHHHHHHH
Q 013869           11 GSMARDS-VAIRAD---QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVL   86 (435)
Q Consensus        11 ~~~~p~~-~al~~~---~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~~~~~l   86 (435)
                      +..++++ +.++..   ++.+||+|++.++.++|..|.+.+               .|+++||+|++++||+++++++++
T Consensus        26 ~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~---------------~~i~~gDvV~i~~pNs~~~~~~~l   90 (537)
T KOG1176|consen   26 AFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELG---------------LGIKKGDVVGILAPNTPEFVELAL   90 (537)
T ss_pred             ccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcC---------------CCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3333444 666654   499999999999999999999853               258999999999999999999999


Q ss_pred             HHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccc-------cccc-
Q 013869           87 GTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETT-------VFDQ-  158 (435)
Q Consensus        87 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-  158 (435)
                      ||++.|+++.++||.+.+.++.+.++.++++++|++.+..+.+..........+..+...........       .... 
T Consensus        91 a~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~  170 (537)
T KOG1176|consen   91 AVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLM  170 (537)
T ss_pred             HHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCccccccccccccchhhcc
Confidence            99999999999999999999999999999999999999999988887665544443332211000000       0000 


Q ss_pred             ---hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHH
Q 013869          159 ---SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLY  235 (435)
Q Consensus       159 ---~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~  235 (435)
                         .+.. ......+|++.++|||||||.||||.+||++++.+.......+.+...++.++.+|++|.+|+...+.+.+.
T Consensus       171 ~~~~~~~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~  249 (537)
T KOG1176|consen  171 PEGLPDG-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLA  249 (537)
T ss_pred             ccCCCcc-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHh
Confidence               0111 345567999999999999999999999999999998888888888889999999999999999875555777


Q ss_pred             cCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCC
Q 013869          236 AGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL  315 (435)
Q Consensus       236 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l  315 (435)
                      .|+++++...|++..++..          +++|++|++.++|.++..|++...        ....+++++|.+.+||+++
T Consensus       250 ~~~~ii~~~~f~~~~~~~~----------i~kykvt~~~~vP~~~~~l~~~p~--------~~~~~l~sl~~v~~gga~~  311 (537)
T KOG1176|consen  250 GGTTIICLRKFDAELFLDL----------IEKYKVTHLFLVPPVLNMLAKSPI--------VKKYDLSSLRSVLSGGAPL  311 (537)
T ss_pred             CCceEEECCCCCHHHHHHH----------HHHhCEEEEEcChHHHHHHhcCCc--------cCcccCCccEEEEecCCCC
Confidence            7788888888999999999          777999999999999999998642        3445799999999999999


Q ss_pred             CHHHHHHHHHHhC-CcccccccCccccchhccCCCCC-CCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccc
Q 013869          316 PLPVMQQWETITG-HRLLERYGMTEFVMAISNPLRGA-RKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFK  392 (435)
Q Consensus       316 ~~~l~~~~~~~~~-~~l~~~YG~tE~~~~~~~~~~~~-~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~  392 (435)
                      ++++.+++.+.++ ..+.+.||+||+++.++.+.... .+++++|.+++++++++.++.|+..+.+ .||||++|+++++
T Consensus       312 ~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~e~g~~l~~~~~GEI~vrg~~imk  391 (537)
T KOG1176|consen  312 SPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLDETGVSLGPNQTGEICVRGPQVMK  391 (537)
T ss_pred             CHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEEEeeCCCCCCCCCCCceEEEEECcccch
Confidence            9999999999998 88999999999996666444333 5899999999999999999999887666 8999999999999


Q ss_pred             cccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          393 EYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       393 gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ||++||+.|++.|+++|||+|||+|++|+||+|++.||++|+|
T Consensus       392 GY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlI  434 (537)
T KOG1176|consen  392 GYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLI  434 (537)
T ss_pred             hhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhhe
Confidence            9999999999999888999999999999999999999999987

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.8e-62  Score=487.85  Aligned_cols=400  Identities=30%  Similarity=0.494  Sum_probs=335.7

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcc--cCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKS--YSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~--~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~   78 (435)
                      +++.+.|.++++++|+++|+++.+..  +||+||.++++++|++|++.                 |+++||+|+|+++|+
T Consensus        11 ~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~-----------------~v~~gdrVail~~N~   73 (534)
T COG0318          11 LTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQAL-----------------GVKPGDRVAILLPNS   73 (534)
T ss_pred             ccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCC
Confidence            47889999999999999999998877  99999999999999999995                 799999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCC-CCCCC---Cccc
Q 013869           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPP-VPNVS---SETT  154 (435)
Q Consensus        79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~  154 (435)
                      +++++++|||+++|++++|+||.++..++.++++.+++++++++.++.+.+.......+........ .....   ....
T Consensus        74 ~e~~~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (534)
T COG0318          74 PEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEA  153 (534)
T ss_pred             HHHHHHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccccccHHH
Confidence            9999999999999999999999999999999999999999999998666555554433111111111 11110   0011


Q ss_pred             cccch--hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhcc--CCCCCeeEEeecchhhhHHHHHH
Q 013869          155 VFDQS--QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNAL  230 (435)
Q Consensus       155 ~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~l~~~pl~~~~g~~~~~  230 (435)
                      .....  .........++++++++|||||||.||+|.+||++++.+.......+.  +...|++++++|++|.+|+...+
T Consensus       154 ~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~  233 (534)
T COG0318         154 LAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGL  233 (534)
T ss_pred             HhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHH
Confidence            11100  001111267899999999999999999999999999999999988888  89999999999999999999877


Q ss_pred             HHHHHcCCEEEEcC--CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhcc-ccEE
Q 013869          231 LAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK-QLRL  307 (435)
Q Consensus       231 ~~~l~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~-~lr~  307 (435)
                      ..++..|+++++.+  .|++...+..          +.++++|++.++|+++..+++..+...        ..++ ++|.
T Consensus       234 ~~~~~~G~~~v~~~~~~f~~~~~~~~----------i~~~~~t~~~~vPt~~~~ll~~~~~~~--------~~~~~~lr~  295 (534)
T COG0318         234 LAPLLGGGTLVLLSPEPFDPEEVLWL----------IEKYKVTVLSGVPTFLRELLDNPEKDD--------DDLSSSLRL  295 (534)
T ss_pred             HHHHHcCCEEEeCCCCCcCHHHHHHH----------HHHhcceEEecchHHHHHHHhCCccCc--------cccccceEE
Confidence            77899999999998  5999998888          555789999999999999998755332        2233 4999


Q ss_pred             EEecCCCCCHHHHHHHHHHhC-CcccccccCccccchhccCCCCC--CCCCccceecCCCeEEEecCCCC-CCCCccceE
Q 013869          308 MMCGSSALPLPVMQQWETITG-HRLLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESG-SDAAGVGEI  383 (435)
Q Consensus       308 i~~~G~~l~~~l~~~~~~~~~-~~l~~~YG~tE~~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~-~~~~~~Gel  383 (435)
                      ++.||++++++++++|.+.|+ ..+++.||+||++..++......  ...+++|.|+|+++++|+|+++. ..++.+|||
T Consensus       296 ~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~pg~vGei  375 (534)
T COG0318         296 VLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLPGEVGEI  375 (534)
T ss_pred             EEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCCCCceEE
Confidence            999999999999999999997 57999999999987655444333  46777899999999999997775 455458999


Q ss_pred             EEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          384 CVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       384 ~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +++||+++.||+++|+.|.+.|+++|||+|||+|++|+||+++|.||.+|+|
T Consensus       376 ~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I  427 (534)
T COG0318         376 WVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLI  427 (534)
T ss_pred             EEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEE
Confidence            9999999999999999999988767999999999999999999999999986

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=2.4e-62  Score=475.07  Aligned_cols=395  Identities=28%  Similarity=0.418  Sum_probs=321.1

Q ss_pred             hHHHHHHHhcccCCCeeEEEe----CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCC
Q 013869            2 EVFKAAYKKGSMARDSVAIRA----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~----~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~   77 (435)
                      ++.+.+.++++.+|+.+|+..    ..+.+||+|+.+++..+|++|+..                 |+..||+|+|++.|
T Consensus        17 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~l-----------------g~~~gdrvai~a~n   79 (613)
T COG1022          17 TLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSL-----------------GIPAGDRVAIFAAN   79 (613)
T ss_pred             cHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhc-----------------CCCCCCEEEEEeCC
Confidence            567889999999999999984    568999999999999999999994                 88779999999999


Q ss_pred             CHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhH-HHHHHHHhccCCccccCCCCC---------
Q 013869           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-EVLQNVASKSGAKFSLIPPVP---------  147 (435)
Q Consensus        78 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------  147 (435)
                      +++|+++.+|||.+|++.||+++..+++++.++|+.+++++||++.... +.+......++..+.......         
T Consensus        80 r~eW~i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (613)
T COG1022          80 RPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAK  159 (613)
T ss_pred             CHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchh
Confidence            9999999999999999999999999999999999999999999998444 343333332211000000000         


Q ss_pred             -----CCCCc-cc---cccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhcc-CCCCCeeEEe
Q 013869          148 -----NVSSE-TT---VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE-YTSADQFLHC  217 (435)
Q Consensus       148 -----~~~~~-~~---~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~~l~~  217 (435)
                           ..... ..   ..............++|.|.|+|||||||.||||++||+|+++++........ ..+.|+.++.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~Lsf  239 (613)
T COG1022         160 ALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSF  239 (613)
T ss_pred             hccccccccccchhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEe
Confidence                 00000 00   00111111224678999999999999999999999999999999999999996 9999999999


Q ss_pred             ecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHH---
Q 013869          218 LPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL---  294 (435)
Q Consensus       218 ~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~---  294 (435)
                      +|+.|++..++...  +..++.+......++..++..          +..++||.+.++|.+|+.+.+...+.-.+.   
T Consensus       240 LPlaHi~Er~~~~~--~~~~~g~~~~~~~~~~~~~~d----------l~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~  307 (613)
T COG1022         240 LPLAHIFERAFEGG--LALYGGVTVLFKEDPRTLLED----------LKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAV  307 (613)
T ss_pred             CcHHHHHHHHHHHH--HHhhcceEEEecCCHHHHHHH----------HHHhCCeEEeechHHHHHHHHHHHHHHHhcchh
Confidence            99999999875433  444444444455678888888          455899999999999999887642111000   


Q ss_pred             -------------------------------------HHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccC
Q 013869          295 -------------------------------------QAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGM  337 (435)
Q Consensus       295 -------------------------------------~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~  337 (435)
                                                           .+........+|++++||+++++++...++.. ++++.+.||+
T Consensus       308 ~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGl  386 (613)
T COG1022         308 RRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGL  386 (613)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecc
Confidence                                                 01111223589999999999999998888886 8999999999


Q ss_pred             ccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCccceEEEecCCccccccCCchhcccccccCCccccCceE
Q 013869          338 TEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTG  417 (435)
Q Consensus       338 tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g  417 (435)
                      ||++++++.........+++|+|+|+++++|+|+         |||+||||++++|||++|+.|.++|++||||+|||+|
T Consensus       387 TEts~~~~v~~~~~~~~gtvG~p~p~~evKI~d~---------GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg  457 (613)
T COG1022         387 TETSAVVSVNPPDRFVLGTVGKPLPGIEVKIADD---------GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLG  457 (613)
T ss_pred             cccccceEEccccCcccCCcCCcCCCceEEEccC---------ceEEEecchhcchhcCChHHHhhhccccCCcccCcee
Confidence            9999888877777788999999999999999996         9999999999999999999999999999999999999


Q ss_pred             EEcCCccEEEecccccCC
Q 013869          418 KQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       418 ~~~~dG~l~~~gR~~d~i  435 (435)
                      .+|++|+|++.||++|+|
T Consensus       458 ~~d~~g~L~i~gRkK~~i  475 (613)
T COG1022         458 ELDEDGYLVITGRKKELI  475 (613)
T ss_pred             EEcCCCcEEEeecccceE
Confidence            999999999999999986

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.5e-62  Score=494.12  Aligned_cols=408  Identities=20%  Similarity=0.306  Sum_probs=322.9

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC-----CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCC--------
Q 013869            2 EVFKAAYKKGSMARDSVAIRAD-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCG--------   68 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~-----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g--------   68 (435)
                      ||.++|.++++++|+++|++..     .+.+||+|+.+++.++|++|.+..              .+|+++|        
T Consensus        62 ~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~--------------~~Gv~~g~~~~~~~~  127 (746)
T PTZ00342         62 HIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYE--------------GKGIPEKKYNEEQNN  127 (746)
T ss_pred             hHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHh--------------hcCCCcCcccccccc
Confidence            6889999999999999999962     368999999999999999999720              0288888        


Q ss_pred             ---CeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC--ccccC
Q 013869           69 ---ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLI  143 (435)
Q Consensus        69 ---~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~  143 (435)
                         |+|+|+++|+++|+++++||+++|+++||+++.++.+++.++|+.+++++|+++.+..+.+.......+.  .+..+
T Consensus       128 g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~~ii~~  207 (746)
T PTZ00342        128 GKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIIL  207 (746)
T ss_pred             ccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCceEEEEE
Confidence               9999999999999999999999999999999999999999999999999999998887776665444332  12222


Q ss_pred             CCCCCC------------------CCc--c--------------------------------cc---c----------cc
Q 013869          144 PPVPNV------------------SSE--T--------------------------------TV---F----------DQ  158 (435)
Q Consensus       144 ~~~~~~------------------~~~--~--------------------------------~~---~----------~~  158 (435)
                      ......                  ...  .                                ..   .          +.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  287 (746)
T PTZ00342        208 DTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDD  287 (746)
T ss_pred             CCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHH
Confidence            111000                  000  0                                00   0          00


Q ss_pred             h-----hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhc--cCCCCCeeEEeecchhhhHHHHHHH
Q 013869          159 S-----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW--EYTSADQFLHCLPLHHVHGLFNALL  231 (435)
Q Consensus       159 ~-----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~l~~~pl~~~~g~~~~~~  231 (435)
                      .     .........++++++|+|||||||.||||++||+++++.+.......  .....+++++++|++|.+++.. .+
T Consensus       288 ~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~-~~  366 (746)
T PTZ00342        288 MTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVI-AY  366 (746)
T ss_pred             HHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHH-HH
Confidence            0     00012245679999999999999999999999999998877654432  2335689999999999999874 77


Q ss_pred             HHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccc----cHH--------------
Q 013869          232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM----DTE--------------  293 (435)
Q Consensus       232 ~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----~~~--------------  293 (435)
                      .++..|+++++.+. ++..+++.          +.+++||++.++|.+|..|.+.....    +..              
T Consensus       367 ~~l~~G~~i~~~~~-~~~~l~~d----------i~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~  435 (746)
T PTZ00342        367 LSFMLGGTINIWSK-DINYFSKD----------IYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKS  435 (746)
T ss_pred             HHHHcCCEEEEeCC-CHHHHHHH----------HHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            78999999999875 77777777          56699999999999999998642110    100              


Q ss_pred             ----------------HHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCCCCCCCcc
Q 013869          294 ----------------LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTV  357 (435)
Q Consensus       294 ----------------~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~  357 (435)
                                      ..+......+++|.+++||+++++++.+.|+..+++++++.||+||+++.++.........+++
T Consensus       436 ~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~~~~~~~~~gsv  515 (746)
T PTZ00342        436 NNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTESI  515 (746)
T ss_pred             hhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeeeccCCCCCcccc
Confidence                            0011112237999999999999999999999999999999999999976555433344567899


Q ss_pred             ceec-CCCeEEEecCCC-CCCC-CccceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccC
Q 013869          358 GNPL-PGVQVKIAEDES-GSDA-AGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIY  434 (435)
Q Consensus       358 G~p~-~~~~~~i~d~~~-~~~~-~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~  434 (435)
                      |+|+ |+++++++|.++ .... ...|||+++||+++.||+++|+.|++.|+++|||+|||+|++|+||+|+|.||++|+
T Consensus       516 G~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdl  595 (746)
T PTZ00342        516 GGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGL  595 (746)
T ss_pred             cCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCe
Confidence            9998 999999998432 2222 236999999999999999999999999998999999999999999999999999998


Q ss_pred             C
Q 013869          435 F  435 (435)
Q Consensus       435 i  435 (435)
                      |
T Consensus       596 I  596 (746)
T PTZ00342        596 V  596 (746)
T ss_pred             E
Confidence            6

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=4.2e-62  Score=439.43  Aligned_cols=399  Identities=22%  Similarity=0.324  Sum_probs=340.0

Q ss_pred             hHHHHHHHhcccCCCeeEEEe--CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCH
Q 013869            2 EVFKAAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~   79 (435)
                      |+.+++...+++.||+.|++.  ++..+||+|+.+.++.+|+.|..                 +|+++||+|+++.||+.
T Consensus        51 Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~-----------------lGL~kGDrVgvwgpN~~  113 (596)
T KOG1177|consen   51 TIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLS-----------------LGLKKGDRVGVWGPNSY  113 (596)
T ss_pred             cHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHh-----------------hcCCCCCEEEEecCChH
Confidence            678899999999999999997  56789999999999999999999                 59999999999999999


Q ss_pred             HHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEech-----hhHHHHHHHHhccCC----ccc--cCCC---
Q 013869           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE-----DYREVLQNVASKSGA----KFS--LIPP---  145 (435)
Q Consensus        80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~-----~~~~~~~~~~~~~~~----~~~--~~~~---  145 (435)
                      +|+.+.|||.++|.+.+++||.+..+++.+.|++.+++++|..+     .++..+.++..+...    .+.  .++.   
T Consensus       114 ~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lth  193 (596)
T KOG1177|consen  114 EWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTH  193 (596)
T ss_pred             HHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceE
Confidence            99999999999999999999999999999999999999999987     345556655544221    110  0000   


Q ss_pred             ----CCCCCC-ccccc-------cchh----hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCC
Q 013869          146 ----VPNVSS-ETTVF-------DQSQ----AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT  209 (435)
Q Consensus       146 ----~~~~~~-~~~~~-------~~~~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~  209 (435)
                          .++.+. .....       ....    ..-.....+++.+-|.|||||||.|||+.+||.+++++........++.
T Consensus       194 vi~~~ed~~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~  273 (596)
T KOG1177|consen  194 VILADEDHPLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYN  273 (596)
T ss_pred             EEecCCCCcCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcC
Confidence                000000 00000       0000    0112356789999999999999999999999999999999999999999


Q ss_pred             CCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEc-CCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhc
Q 013869          210 SADQFLHCLPLHHVHGLFNALLAPLYAGATVEFM-PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE  288 (435)
Q Consensus       210 ~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  288 (435)
                      ..+++++..|++|..|.....++++..|++++++ +.|++.+.+.+          |+++++|.++++|+++..|++.  
T Consensus       274 e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqa----------i~~ekcT~l~gtPtM~~Dlln~--  341 (596)
T KOG1177|consen  274 EKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQA----------ISNEKCTTLYGTPTMFVDLLNI--  341 (596)
T ss_pred             cceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHH----------HHhhceEEEecChHHHHHHhcc--
Confidence            9999999999999999888999999999999996 57999999999          7779999999999999999986  


Q ss_pred             cccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCC-cccccccCccccchhccCCCCC---CCCCccceecCCC
Q 013869          289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPLRGA---RKAGTVGNPLPGV  364 (435)
Q Consensus       289 ~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~-~l~~~YG~tE~~~~~~~~~~~~---~~~~~~G~p~~~~  364 (435)
                            +.....+++++|..+.||+++++++.+.+...... .+...||+||++.+.+......   ...-++|+..++.
T Consensus       342 ------~~~~~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~  415 (596)
T KOG1177|consen  342 ------PQKQQVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHY  415 (596)
T ss_pred             ------hhhccCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccc
Confidence                  34456688999999999999999999999987655 4778999999997776544332   3456899999999


Q ss_pred             eEEEecCCCCCCCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          365 QVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       365 ~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +..|+|.+|...+-+ -||||+||.+.+.|||++++.|++...+|.||+|||+|.||++|.+++.||.+|+|
T Consensus       416 Ea~iv~~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI  487 (596)
T KOG1177|consen  416 EAAIVDKDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMI  487 (596)
T ss_pred             ccccccCCCCccccCCCceEEEEechhheeecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeE
Confidence            999999999998888 59999999999999999999999999999999999999999999999999999997

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=4.1e-61  Score=490.56  Aligned_cols=405  Identities=26%  Similarity=0.332  Sum_probs=325.8

Q ss_pred             hHHHHHHHhcccCCCeeEEEe----C-----CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 013869            2 EVFKAAYKKGSMARDSVAIRA----D-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~----~-----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~   72 (435)
                      ++.+.|.++++++|+++|+..    +     .+.+||+||.++++++|++|++                 +|+++||+|+
T Consensus        45 tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~-----------------~Gv~~gd~Va  107 (651)
T PLN02736         45 TLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQ-----------------HGIPKGACVG  107 (651)
T ss_pred             CHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEE
Confidence            678999999999999999942    2     1469999999999999999999                 4999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCcc--ccCCCCCC-C
Q 013869           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKF--SLIPPVPN-V  149 (435)
Q Consensus        73 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~  149 (435)
                      |+++|+++++++++||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.......+...  ..+..... .
T Consensus       108 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~  187 (651)
T PLN02736        108 LYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPL  187 (651)
T ss_pred             EEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhh
Confidence            99999999999999999999999999999999999999999999999999888776665544333211  11110000 0


Q ss_pred             ---CC-----ccccccch-----hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEE
Q 013869          150 ---SS-----ETTVFDQS-----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLH  216 (435)
Q Consensus       150 ---~~-----~~~~~~~~-----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~  216 (435)
                         ..     .....+..     .........++++++|+|||||||.||||.+||+++..++......+++.+.|++++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~  267 (651)
T PLN02736        188 PSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHIS  267 (651)
T ss_pred             hhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEE
Confidence               00     00000000     001122346799999999999999999999999999999998888888999999999


Q ss_pred             eecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccH----
Q 013869          217 CLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDT----  292 (435)
Q Consensus       217 ~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----  292 (435)
                      .+|++|.++++ .++.++..|+++++.+. ++..+++.          ++++++|+++++|.+++.+.+.....-.    
T Consensus       268 ~lPl~h~~~~~-~~~~~l~~G~~i~~~~~-~~~~~~~~----------i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~  335 (651)
T PLN02736        268 YLPLAHIYERV-NQIVMLHYGVAVGFYQG-DNLKLMDD----------LAALRPTIFCSVPRLYNRIYDGITNAVKESGG  335 (651)
T ss_pred             eCCHHHHHHHH-HHHHHHHcCCEEEEeCC-CHHHHHHH----------HHHhCCcEEecchHHHHHHHHHHHHHHhcccH
Confidence            99999999987 58889999999998775 66677777          6669999999999999998775321000    


Q ss_pred             -------------------------H-----HHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccc
Q 013869          293 -------------------------E-----LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVM  342 (435)
Q Consensus       293 -------------------------~-----~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~  342 (435)
                                               .     ..+......+++|.+++||+++++++.+.+.+.+++++++.||+||+++
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~  415 (651)
T PLN02736        336 LKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSC  415 (651)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhch
Confidence                                     0     0000011115899999999999999999999999999999999999987


Q ss_pred             hhccCCCCCCCCCccceecCCCeEEEecCCC-C----CCCCccceEEEecCCccccccCCchhcccccccCCccccCceE
Q 013869          343 AISNPLRGARKAGTVGNPLPGVQVKIAEDES-G----SDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTG  417 (435)
Q Consensus       343 ~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~-~----~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g  417 (435)
                      .++.........+++|+|+|+++++|+|.++ .    ..+...|||+++||+++.||+++++.+++.|+++|||+|||+|
T Consensus       416 ~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg  495 (651)
T PLN02736        416 VISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIG  495 (651)
T ss_pred             heeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceE
Confidence            6654443445678999999999999998432 1    1222369999999999999999999999999889999999999


Q ss_pred             EEcCCccEEEecccccCC
Q 013869          418 KQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       418 ~~~~dG~l~~~gR~~d~i  435 (435)
                      ++|+||+|+|.||+||+|
T Consensus       496 ~~d~dG~l~i~GR~kd~i  513 (651)
T PLN02736        496 LWLPGGRLKIIDRKKNIF  513 (651)
T ss_pred             EEcCCCcEEEEEechhhe
Confidence            999999999999999986

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.6e-60  Score=485.09  Aligned_cols=403  Identities=23%  Similarity=0.316  Sum_probs=311.6

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC----C-----cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 013869            2 EVFKAAYKKGSMARDSVAIRAD----Q-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~   72 (435)
                      |+.+.|.++++++||++|++..    +     +.+||+||.++++++|++|++                 +|+++||+|+
T Consensus        46 t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-----------------~Gv~~Gd~Va  108 (666)
T PLN02614         46 SCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRS-----------------VGVKDEAKCG  108 (666)
T ss_pred             cHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEE
Confidence            7889999999999999999831    1     358999999999999999999                 4999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccC---CccccCCCCCCC
Q 013869           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG---AKFSLIPPVPNV  149 (435)
Q Consensus        73 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  149 (435)
                      |+++|+++|++++|||+++|+++||+++.++.+++.++++.++++++|++.+..+.+........   ..+..+......
T Consensus       109 i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~  188 (666)
T PLN02614        109 IYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSRE  188 (666)
T ss_pred             EEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChH
Confidence            99999999999999999999999999999999999999999999999999876554433222110   111111110000


Q ss_pred             -------CC--ccccccc----h-hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhc-----cCCC
Q 013869          150 -------SS--ETTVFDQ----S-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-----EYTS  210 (435)
Q Consensus       150 -------~~--~~~~~~~----~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-----~~~~  210 (435)
                             ..  .....+.    . .........++|+++|+|||||||.||||.+||+++...+......+     ++.+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~  268 (666)
T PLN02614        189 QKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTV  268 (666)
T ss_pred             HhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCC
Confidence                   00  0000000    0 00111234579999999999999999999999999988877655443     5678


Q ss_pred             CCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccc
Q 013869          211 ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM  290 (435)
Q Consensus       211 ~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  290 (435)
                      +|++++++|++|.++... ++.++..|+++++.+ +++..+++.          +++++||++.++|.++..+++.....
T Consensus       269 ~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~----------i~~~~~T~~~~vP~~~~~l~~~~~~~  336 (666)
T PLN02614        269 KDVYLSYLPLAHIFDRVI-EECFIQHGAAIGFWR-GDVKLLIED----------LGELKPTIFCAVPRVLDRVYSGLQKK  336 (666)
T ss_pred             CcEEEEeccHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHH----------HHHhCCeEEEecHHHHHHHHHHHHHH
Confidence            999999999999998864 666788999998875 577777777          66699999999999999988643210


Q ss_pred             cH----------------H---------------H-----HHHhhhhc-cccEEEEecCCCCCHHHHHHHHHHh-CCccc
Q 013869          291 DT----------------E---------------L-----QAASASAA-KQLRLMMCGSSALPLPVMQQWETIT-GHRLL  332 (435)
Q Consensus       291 ~~----------------~---------------~-----~~~~~~~l-~~lr~i~~~G~~l~~~l~~~~~~~~-~~~l~  332 (435)
                      ..                .               .     .+.....+ +++|.+++||+++++.+ ++|.+.+ +++++
T Consensus       337 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~  415 (666)
T PLN02614        337 LSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVL  415 (666)
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEE
Confidence            00                0               0     00000112 68999999999999875 5677766 58999


Q ss_pred             ccccCccccchhccC-CCCCCCCCccceecCCCeEEEec-CCC--CCCCCc-cceEEEecCCccccccCCchhccccccc
Q 013869          333 ERYGMTEFVMAISNP-LRGARKAGTVGNPLPGVQVKIAE-DES--GSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTA  407 (435)
Q Consensus       333 ~~YG~tE~~~~~~~~-~~~~~~~~~~G~p~~~~~~~i~d-~~~--~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~  407 (435)
                      +.||+||+++.++.. .......+++|+|+||++++|+| +++  ..++.+ .|||+++|++++.||+++|+.|.+.|. 
T Consensus       416 ~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~-  494 (666)
T PLN02614        416 QGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLI-  494 (666)
T ss_pred             eeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhhc-
Confidence            999999987544422 22223467999999999999998 332  444444 799999999999999999999999995 


Q ss_pred             CCccccCceEEEcCCccEEEecccccCC
Q 013869          408 DGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       408 ~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +|||+|||+|++|+||+|+|+||+||+|
T Consensus       495 dGw~~TGDlg~~d~dG~l~i~gR~kd~i  522 (666)
T PLN02614        495 DGWLHTGDVGEWQPNGSMKIIDRKKNIF  522 (666)
T ss_pred             cCCcccceEEEEcCCCCEEEEEcchhce
Confidence            8999999999999999999999999987

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=5.1e-61  Score=466.38  Aligned_cols=396  Identities=32%  Similarity=0.516  Sum_probs=315.3

Q ss_pred             HHHhcccCCCeeEEEe-CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHHHHHH
Q 013869            7 AYKKGSMARDSVAIRA-DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV   85 (435)
Q Consensus         7 ~~~~~~~~p~~~al~~-~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~~~~~   85 (435)
                      |.++|+++||++|+++ .++++||+||+++++++|..|++                 +|+++|++|+++++|++++++++
T Consensus         1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~-----------------~g~~~~~~V~i~~~n~~~~~~~~   63 (417)
T PF00501_consen    1 FERQAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRK-----------------LGVKKGDRVAILLPNSIEFVVAF   63 (417)
T ss_dssp             HHHHHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHH-----------------TTSSTTSEEEEEESSSHHHHHHH
T ss_pred             ChhHHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHH-----------------hCCCccccccccCCccceeeeee
Confidence            6889999999999999 99999999999999999999998                 59999999999999999999999


Q ss_pred             HHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEe----chhhHHHHHHHHhccCC-c-cccCCCCCCCCCccccccch
Q 013869           86 LGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS----TEDYREVLQNVASKSGA-K-FSLIPPVPNVSSETTVFDQS  159 (435)
Q Consensus        86 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~  159 (435)
                      +||+++|++++|++|.++.+++.++++.++++++|+    +......+......... . ...+................
T Consensus        64 ~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (417)
T PF00501_consen   64 LACLRAGAIPVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKKEALKSASL  143 (417)
T ss_dssp             HHHHHTT-EEEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTCHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccceeEEEEeccccccccccchhhhcccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999997    22222223333222111 1 11111111111100000000


Q ss_pred             hhhhccC-CCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHH--HhccCCCCCeeEEeecchhhhHHHHHHHHHHHc
Q 013869          160 QAEKMDG-QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT--EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYA  236 (435)
Q Consensus       160 ~~~~~~~-~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~--~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~  236 (435)
                      ....... ..++++++++|||||||.||+|.++|+++++.+..+.  ...+++  +++++.+|++|..|++..++.++..
T Consensus       144 ~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~  221 (417)
T PF00501_consen  144 SDEPQSPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFS  221 (417)
T ss_dssp             CHCSHSTTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHC
T ss_pred             ccccccCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccccccccccccc
Confidence            0000000 1569999999999999999999999999999888864  222333  6999999999999996679999999


Q ss_pred             CCEEEEcCCcch---hHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCC
Q 013869          237 GATVEFMPKFSV---RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS  313 (435)
Q Consensus       237 G~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~  313 (435)
                      |+++++++....   ..+++.          ++++++|++.++|.++..+++..+. ..   .....+++++|.++++|+
T Consensus       222 G~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~l~~l~~~~~~-~~---~~~~~~l~~lr~v~~~G~  287 (417)
T PF00501_consen  222 GATLVLPSPFDLFDPESLLEL----------ISRYKPTILFAVPSMLEALLQSPEE-KT---KISKKDLSSLRTVISGGE  287 (417)
T ss_dssp             TSEEEEESSHHHHHHHHHHHH----------HHHHTESEEEEEHHHHHHHHHHHHT-TH---HGTTTTGTT-SEEEEESS
T ss_pred             cccccccccccccccccchhc----------ccccccccccccccccccccccccc-cc---cccccccccccccccccc
Confidence            999999998765   334455          6779999999999999999873211 10   112347888999999999


Q ss_pred             CCCHHHHHHHHHHhCC-cccccccCccccchhccC--CCCCCCCCccceecCCCeEEEecCC-CCCCCCc-cceEEEecC
Q 013869          314 ALPLPVMQQWETITGH-RLLERYGMTEFVMAISNP--LRGARKAGTVGNPLPGVQVKIAEDE-SGSDAAG-VGEICVKSP  388 (435)
Q Consensus       314 ~l~~~l~~~~~~~~~~-~l~~~YG~tE~~~~~~~~--~~~~~~~~~~G~p~~~~~~~i~d~~-~~~~~~~-~Gel~v~~~  388 (435)
                      ++++++.+++++.++. ++++.||+||++.+++..  .....+.+++|+|+++++++|+|++ ++..+.+ .|||+++|+
T Consensus       288 ~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~  367 (417)
T PF00501_consen  288 PLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGP  367 (417)
T ss_dssp             T-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEEST
T ss_pred             cCChhhccccccccccccceecccccccceeeecccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            9999999999999987 999999999999887744  3333577889999999999999987 6666555 799999999


Q ss_pred             CccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          389 SLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       389 ~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      .++.||+++++.+.+.|+++|||+|||+|++|+||+++++||+||+|
T Consensus       368 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i  414 (417)
T PF00501_consen  368 NVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMI  414 (417)
T ss_dssp             TSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEE
T ss_pred             ccceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCCEE
Confidence            99999999999999999866899999999999999999999999986

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=8.3e-60  Score=451.45  Aligned_cols=393  Identities=25%  Similarity=0.371  Sum_probs=320.0

Q ss_pred             HHHHHhccc-CCCeeEEEeCC-----cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869            5 KAAYKKGSM-ARDSVAIRADQ-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (435)
Q Consensus         5 ~~~~~~~~~-~p~~~al~~~~-----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~   78 (435)
                      ++++++... .+|+.|++..+     +.+||+||++.++++|+.|++.                .|+ +||+|+|++|+.
T Consensus        13 n~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~----------------~gv-kGDrV~iymp~~   75 (528)
T COG0365          13 NALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDL----------------GGV-KGDRVAIYMPNS   75 (528)
T ss_pred             hhhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHh----------------CCC-CCCEEEEEcCCC
Confidence            457777653 57899999853     6799999999999999999975                478 999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHh-----ccCCccccCCCCCCCCCcc
Q 013869           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS-----KSGAKFSLIPPVPNVSSET  153 (435)
Q Consensus        79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  153 (435)
                      +++++++|||+++|++.+|+.+.++++.+...++.++++++|+++...........     .....+..+.... .....
T Consensus        76 pe~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~-~~~~~  154 (528)
T COG0365          76 PEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG-LWYDE  154 (528)
T ss_pred             HHHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc-ccHHH
Confidence            99999999999999999999999999999999999999999999866654332111     0000011111111 11111


Q ss_pred             ccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHH-HhccCCCCCeeEEeecchhhhHHHHHHHH
Q 013869          154 TVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHVHGLFNALLA  232 (435)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~~l~~~pl~~~~g~~~~~~~  232 (435)
                      .........+......+|+++++|||||||.||||.++|..++....... ..+.+.++|++++..++.|.+|.+..+++
T Consensus       155 ~~~~~~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~  234 (528)
T COG0365         155 AVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFS  234 (528)
T ss_pred             HhhccCCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHH
Confidence            11111111223347889999999999999999999999997666555544 46678899999999999999999999999


Q ss_pred             HHHcCCEEEEcCCc---chhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEE
Q 013869          233 PLYAGATVEFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM  309 (435)
Q Consensus       233 ~l~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~  309 (435)
                      +|.+|+++++.+..   ++..+++.          +++|++|.++..|+.++.|.+.-.        ....++|+||.+.
T Consensus       235 pL~~Gat~~~~eg~p~~~~~~~~~~----------ie~~~vt~~~tsPT~~R~l~~~g~--------~~~~dlssLr~~~  296 (528)
T COG0365         235 PLASGATTVLYDGRPFYSPERLWEA----------LEKYKVTIFGTSPTFLRRLMKLGL--------GEPYDLSSLRVLG  296 (528)
T ss_pred             HHhcCCeEEEeCCCCCCCHHHHHHH----------HHHhCCceEeeCHHHHHHHHhcCC--------cccccchhheeee
Confidence            99999999988642   36777777          777999999999999999987522        3456899999999


Q ss_pred             ecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCccceEEEecC-
Q 013869          310 CGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSP-  388 (435)
Q Consensus       310 ~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~~Gel~v~~~-  388 (435)
                      +.||+++++.++.+.+.+++++.+.||+||+|++...+.. ..++++.|+|+||+++.++|++|+.++++.|+|+++.+ 
T Consensus       297 SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~~~~g~~g~p~pG~~~~vvdd~g~~~~~~~G~Lvi~~~~  375 (528)
T COG0365         297 SAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVKNGSSGLPLPGYAVRRVDDEGNPVPPGVGELVVRLPW  375 (528)
T ss_pred             ccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-CcCCCCCCCCCCCceeEEECCCCCcCCCCceEEEEeCCC
Confidence            9999999999999999999999999999999955443333 33445559999999999999998888766699999987 


Q ss_pred             -CccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          389 -SLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       389 -~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                       .++++||+|++...+.+.+. ||.|||.+++|+||++||+||.||+|
T Consensus       376 p~~~~~~w~d~er~~~~y~~~-~y~tGD~~~~DedGy~~i~GR~DDvI  422 (528)
T COG0365         376 PGMALTYWNDPERYKEAYFGR-WYRTGDWAERDEDGYFWLHGRSDDVI  422 (528)
T ss_pred             chhhhhhhCCHHHHHHHHhhc-eeecCceeEEccCCCEEEEeeccceE
Confidence             89999999999999998654 99999999999999999999999987

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.1e-59  Score=479.30  Aligned_cols=403  Identities=24%  Similarity=0.337  Sum_probs=311.5

Q ss_pred             hHHHHHHHhcccCCCeeEEEe----C-----CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 013869            2 EVFKAAYKKGSMARDSVAIRA----D-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~----~-----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~   72 (435)
                      |+.+.|.+.++++|+++|+..    .     .+++||+||.++++++|++|.+                 +|+++||+|+
T Consensus        44 t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~-----------------~Gv~~gd~Va  106 (660)
T PLN02861         44 SPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRS-----------------RGVNPGDRCG  106 (660)
T ss_pred             CHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEE
Confidence            678999999999999999963    1     1479999999999999999999                 4999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC---ccccCCCCCCC
Q 013869           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA---KFSLIPPVPNV  149 (435)
Q Consensus        73 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  149 (435)
                      |+++|+++|++++|||+++|+++||+++.++.+++.++++.++++++|++.+..+.+.......+.   .+..+......
T Consensus       107 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~  186 (660)
T PLN02861        107 IYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSE  186 (660)
T ss_pred             EEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChh
Confidence            999999999999999999999999999999999999999999999999998776655443332211   11111110000


Q ss_pred             -------CCc--cccccc----hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhcc-----CCCC
Q 013869          150 -------SSE--TTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE-----YTSA  211 (435)
Q Consensus       150 -------~~~--~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-----~~~~  211 (435)
                             ...  ....+.    ..........++++++|+|||||||.||||.+||++++..+......++     +.+.
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~  266 (660)
T PLN02861        187 QKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEE  266 (660)
T ss_pred             hhhhhhcCCcEEEEHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCC
Confidence                   000  000000    0001122346799999999999999999999999999988777655443     4678


Q ss_pred             CeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccc-
Q 013869          212 DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM-  290 (435)
Q Consensus       212 ~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-  290 (435)
                      |++++.+|++|.+++.. .+.++..|+++++.+ +++..+++.          +++++||++.++|.++..+.+..... 
T Consensus       267 d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~----------i~~~~~T~~~~vP~~~~~l~~~~~~~~  334 (660)
T PLN02861        267 DSYFSYLPLAHVYDQVI-ETYCISKGASIGFWQ-GDIRYLMED----------VQALKPTIFCGVPRVYDRIYTGIMQKI  334 (660)
T ss_pred             CEEEEECcHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHH----------HHHhCCcEEeechHHHHHHHHHHHHHH
Confidence            99999999999999875 556899999998874 577777777          66699999999999999987532100 


Q ss_pred             -------------------------------cHHHHHH----hhhhc-cccEEEEecCCCCCHHHHHHHHHHhCC-cccc
Q 013869          291 -------------------------------DTELQAA----SASAA-KQLRLMMCGSSALPLPVMQQWETITGH-RLLE  333 (435)
Q Consensus       291 -------------------------------~~~~~~~----~~~~l-~~lr~i~~~G~~l~~~l~~~~~~~~~~-~l~~  333 (435)
                                                     .......    .+..+ +++|.+++||+++++++. +|.+.++. .+++
T Consensus       335 ~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~-~~~~~~~~~~l~~  413 (660)
T PLN02861        335 SSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE-EFLRVTSCSVLSQ  413 (660)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH-HHHHHHcCCCeeE
Confidence                                           0000000    00112 689999999999999975 56676764 7999


Q ss_pred             cccCccccchhccC-CCCCCCCCccceecCCCeEEEec--CCCCC-CCC-ccceEEEecCCccccccCCchhcccccccC
Q 013869          334 RYGMTEFVMAISNP-LRGARKAGTVGNPLPGVQVKIAE--DESGS-DAA-GVGEICVKSPSLFKEYWKLPKVTKDSFTAD  408 (435)
Q Consensus       334 ~YG~tE~~~~~~~~-~~~~~~~~~~G~p~~~~~~~i~d--~~~~~-~~~-~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~  408 (435)
                      .||+||+++.++.. .......+++|+|+++++++|+|  +++.. ... ..|||+++|++++.||+++|+.|.+.|+ +
T Consensus       414 ~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~-d  492 (660)
T PLN02861        414 GYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLI-D  492 (660)
T ss_pred             ecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhhh-c
Confidence            99999987654432 22223467999999999999998  33322 222 3699999999999999999999999995 8


Q ss_pred             CccccCceEEEcCCccEEEecccccCC
Q 013869          409 GFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       409 g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |||+|||+|++|+||+|+|.||+||+|
T Consensus       493 Gw~~TGDlg~~d~dG~l~i~GR~kd~I  519 (660)
T PLN02861        493 GWFHTGDIGEWQPNGAMKIIDRKKNIF  519 (660)
T ss_pred             cCcccCceEEECCCCcEEEEeccccce
Confidence            999999999999999999999999987

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.1e-59  Score=476.45  Aligned_cols=409  Identities=23%  Similarity=0.353  Sum_probs=314.7

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC---------------------------CcccCHHHHHHHHHHHHHHHhhCCCCCcccc
Q 013869            2 EVFKAAYKKGSMARDSVAIRAD---------------------------QKSYSYDQLASSALRISSLLCSNDLKTTSEK   54 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~---------------------------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~   54 (435)
                      |+++.|.++++++||++|+...                           .+.+||+||.++++++|+.|.+         
T Consensus        70 t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~---------  140 (700)
T PTZ00216         70 NFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAE---------  140 (700)
T ss_pred             CHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHH---------
Confidence            6889999999999999999862                           4789999999999999999999         


Q ss_pred             ccccccccccCCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHh
Q 013869           55 TKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS  134 (435)
Q Consensus        55 ~~~~~~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~  134 (435)
                              +|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.++++.+++++++++....+.+.....
T Consensus       141 --------~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~  212 (700)
T PTZ00216        141 --------LGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMK  212 (700)
T ss_pred             --------hCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhh
Confidence                    499999999999999999999999999999999999999999999999999999999999876655443322


Q ss_pred             c--cC-CccccCCCCCCCCCcc-----cc------c--cchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHH
Q 013869          135 K--SG-AKFSLIPPVPNVSSET-----TV------F--DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQ  198 (435)
Q Consensus       135 ~--~~-~~~~~~~~~~~~~~~~-----~~------~--~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~  198 (435)
                      .  .+ ..+..+..........     ..      .  .....+......++++++++|||||||.||||.+||+++.+.
T Consensus       213 ~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~  292 (700)
T PTZ00216        213 SGGMPNTTIIYLDSLPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAG  292 (700)
T ss_pred             hccCCceEEEEECCCccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHH
Confidence            1  11 1122111111000000     00      0  000111123446799999999999999999999999999988


Q ss_pred             HHHHHHhc-----cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCcccccccee
Q 013869          199 VQMLTEAW-----EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF  273 (435)
Q Consensus       199 ~~~~~~~~-----~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~  273 (435)
                      +......+     .+.+.+++++++|++|.+++.. ....+..|+++++.+   +..+.+.+..   ....+.++++|++
T Consensus       293 ~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~~---~~~l~~~~~~---~~~~l~~~~pT~~  365 (700)
T PTZ00216        293 ILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFGS---PRTLTDTFAR---PHGDLTEFRPVFL  365 (700)
T ss_pred             HHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEECC---HHHhhhhhcc---ccchHHHcCCcEE
Confidence            87765543     2367899999999999998764 555678888887743   3333332111   0011677999999


Q ss_pred             ccccHHHHHHHhhhccccHHH---------------------------------HHHhhhhccccEEEEecCCCCCHHHH
Q 013869          274 TGVPTMYTRLIQGYEAMDTEL---------------------------------QAASASAAKQLRLMMCGSSALPLPVM  320 (435)
Q Consensus       274 ~~~P~~~~~l~~~~~~~~~~~---------------------------------~~~~~~~l~~lr~i~~~G~~l~~~l~  320 (435)
                      .++|.+++.+.+.........                                 .+......+++|.+++||+++++++.
T Consensus       366 ~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~  445 (700)
T PTZ00216        366 IGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQ  445 (700)
T ss_pred             EechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH
Confidence            999999999876532110000                                 00001112689999999999999999


Q ss_pred             HHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCC--CC-CccceEEEecCCccccccCC
Q 013869          321 QQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGS--DA-AGVGEICVKSPSLFKEYWKL  397 (435)
Q Consensus       321 ~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~--~~-~~~Gel~v~~~~~~~gy~~~  397 (435)
                      +.++..++ ++++.||+||+++.++.........+++|+|++|++++|+|+++..  .. ...|||+++|++++.||+++
T Consensus       446 ~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~  524 (700)
T PTZ00216        446 EFVNVVFG-MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQ  524 (700)
T ss_pred             HHHHHHhh-hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCC
Confidence            88887778 9999999999976655433334567899999999999999976532  22 23699999999999999999


Q ss_pred             chhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          398 PKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       398 ~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |+.|++.|+.+|||+|||+|++|+||+|+|.||+||+|
T Consensus       525 pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~i  562 (700)
T PTZ00216        525 EELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALA  562 (700)
T ss_pred             hhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhhe
Confidence            99999999989999999999999999999999999986

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=2.3e-58  Score=460.45  Aligned_cols=396  Identities=21%  Similarity=0.263  Sum_probs=321.9

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCC-cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQ-KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~-~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      ++.+.|.+.++++|+++|+++.. +++||+||.++++++|++|.+                    .+||+|+++++|+++
T Consensus        20 ~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~--------------------~~gd~Val~~~n~~e   79 (539)
T PRK06334         20 TVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSK--------------------YPDQHIGIMMPASAG   79 (539)
T ss_pred             cHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhh--------------------ccCCeEEEEcCCchH
Confidence            67899999999999999998765 799999999999999999976                    369999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhc---cCCccccCCCCCC-CCCcccc-
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK---SGAKFSLIPPVPN-VSSETTV-  155 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~-  155 (435)
                      +++++|||+++|++++|+++.++.+++.++++.+++++++++.+....+......   .+..+..+..... ....... 
T Consensus        80 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  159 (539)
T PRK06334         80 AYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWEKCR  159 (539)
T ss_pred             HHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhhccHHHhhh
Confidence            9999999999999999999999999999999999999999998877665543321   1111111111000 0000000 


Q ss_pred             -c---c-ch----hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHH
Q 013869          156 -F---D-QS----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL  226 (435)
Q Consensus       156 -~---~-~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~  226 (435)
                       .   . ..    .........++++++++|||||||.||+|.+||+++..+.......+++..+|++++.+|++|.+++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~  239 (539)
T PRK06334        160 IGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGF  239 (539)
T ss_pred             hhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhh
Confidence             0   0 00    0001124567999999999999999999999999999888887788888999999999999999998


Q ss_pred             HHHHHHHHHcCCEEEEcC-CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhcccc
Q 013869          227 FNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL  305 (435)
Q Consensus       227 ~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~l  305 (435)
                      ...++.++..|+++++.+ .+++..+++.          |+++++|++.++|+++..|++...        .....++++
T Consensus       240 ~~~~~~~l~~G~~vv~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l  301 (539)
T PRK06334        240 NSCTLFPLLSGVPVVFAYNPLYPKKIVEM----------IDEAKVTFLGSTPVFFDYILKTAK--------KQESCLPSL  301 (539)
T ss_pred             HHHHHHHHHcCCeEEEecCCCCHHHHHHH----------HHHhCCcEEEecHHHHHHHHHhhh--------hcccccccc
Confidence            767889999999999875 5788888887          666999999999999999987532        223467899


Q ss_pred             EEEEecCCCCCHHHHHHHHHHh-CCcccccccCccccchhccCC-CCCCCCCccceecCCCeEEEecCC-CCCCCCc-cc
Q 013869          306 RLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVKIAEDE-SGSDAAG-VG  381 (435)
Q Consensus       306 r~i~~~G~~l~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~-~~~~~~~~~G~p~~~~~~~i~d~~-~~~~~~~-~G  381 (435)
                      |.+++||+++++++.++|.+.+ ++.+++.||+||++.+++... .......++|+|+++++++|+|++ +..++.+ .|
T Consensus       302 r~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~G  381 (539)
T PRK06334        302 RFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETG  381 (539)
T ss_pred             cEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccCCCCceE
Confidence            9999999999999999999998 689999999999986655332 222345679999999999999964 5556655 79


Q ss_pred             eEEEecCCccccccCCchhccccc-ccCCccccCceEEEcCCccEEEecccccCC
Q 013869          382 EICVKSPSLFKEYWKLPKVTKDSF-TADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       382 el~v~~~~~~~gy~~~~~~~~~~~-~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ||+++|++++.||+++++.+.... .++|||+|||+|++|+||++++.||.+|+|
T Consensus       382 el~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~i  436 (539)
T PRK06334        382 LVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFV  436 (539)
T ss_pred             EEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEEEeccCCeE
Confidence            999999999999999998654322 346899999999999999999999999986

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=1.3e-58  Score=473.49  Aligned_cols=414  Identities=23%  Similarity=0.318  Sum_probs=314.4

Q ss_pred             hHHHHHHHhcccCCCeeEEEe------------CC-----------cccCHHHHHHHHHHHHHHHhhCCCCCcccccccc
Q 013869            2 EVFKAAYKKGSMARDSVAIRA------------DQ-----------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNE   58 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~------------~~-----------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~   58 (435)
                      |+.++|.+.++++||++|+..            ++           +.+||+|+.++++++|++|.+             
T Consensus        59 t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-------------  125 (696)
T PLN02387         59 TLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVA-------------  125 (696)
T ss_pred             CHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHH-------------
Confidence            678999999999999999942            12           238999999999999999999             


Q ss_pred             ccccccCCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC
Q 013869           59 NSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA  138 (435)
Q Consensus        59 ~~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~  138 (435)
                          +|+++||+|+|+++|+++|+++++||+++|+++||+++.++.+++.++|+.++++++|++.+..+.+.......+.
T Consensus       126 ----lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~  201 (696)
T PLN02387        126 ----LGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLET  201 (696)
T ss_pred             ----hCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCC
Confidence                5999999999999999999999999999999999999999999999999999999999998887776665443332


Q ss_pred             c--cccCCCCCCCCC-------cc---cccc-----chhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHH
Q 013869          139 K--FSLIPPVPNVSS-------ET---TVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM  201 (435)
Q Consensus       139 ~--~~~~~~~~~~~~-------~~---~~~~-----~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~  201 (435)
                      .  +..+........       ..   ...+     ...........++|+++|+|||||||.||||.+||+++..++..
T Consensus       202 l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~  281 (696)
T PLN02387        202 VKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAG  281 (696)
T ss_pred             ceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHH
Confidence            1  111111100000       00   0000     00001122346799999999999999999999999999988887


Q ss_pred             HHHhc-cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHH
Q 013869          202 LTEAW-EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY  280 (435)
Q Consensus       202 ~~~~~-~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~  280 (435)
                      ....+ .+.++|++++++|++|.+++.. .+.++..|+++.+.......+....+.+  .....++++++|++.++|.++
T Consensus       282 ~~~~~~~~~~~d~~l~~lPl~Hi~~~~~-~~~~~~~g~~i~~g~~~~l~~~~~~~~~--~~~~~i~~~~pT~~~~vP~~l  358 (696)
T PLN02387        282 VMTVVPKLGKNDVYLAYLPLAHILELAA-ESVMAAVGAAIGYGSPLTLTDTSNKIKK--GTKGDASALKPTLMTAVPAIL  358 (696)
T ss_pred             HHhhcCCCCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEECChhhhccccccccc--CchhhHHHhCCcEEEehhHHH
Confidence            76654 5788999999999999999875 4556788888877554322211110000  000116679999999999999


Q ss_pred             HHHHhhhccccHH---------------------------------------HHHHhhhhccccEEEEecCCCCCHHHHH
Q 013869          281 TRLIQGYEAMDTE---------------------------------------LQAASASAAKQLRLMMCGSSALPLPVMQ  321 (435)
Q Consensus       281 ~~l~~~~~~~~~~---------------------------------------~~~~~~~~l~~lr~i~~~G~~l~~~l~~  321 (435)
                      ..+.+........                                       ..+......+++|.+++||+++++++.+
T Consensus       359 ~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~  438 (696)
T PLN02387        359 DRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQR  438 (696)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHH
Confidence            9998653211000                                       0000001126899999999999999988


Q ss_pred             HHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEec-CCCCC----CCCccceEEEecCCccccccC
Q 013869          322 QWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGS----DAAGVGEICVKSPSLFKEYWK  396 (435)
Q Consensus       322 ~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~----~~~~~Gel~v~~~~~~~gy~~  396 (435)
                      .+...+++++++.||+||+++.++.........+++|+|+|+++++|+| +++..    .+...|||+++|++++.||++
T Consensus       439 ~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~  518 (696)
T PLN02387        439 FINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFK  518 (696)
T ss_pred             HHHHHcCCCeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcC
Confidence            8888889999999999999765543333344568999999999999998 44432    122369999999999999999


Q ss_pred             Cchhccccc--ccCC--ccccCceEEEcCCccEEEecccccCC
Q 013869          397 LPKVTKDSF--TADG--FFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       397 ~~~~~~~~~--~~~g--~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +|+.|.+.|  +++|  ||+|||+|++|+||+|++.||+||+|
T Consensus       519 ~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~i  561 (696)
T PLN02387        519 NQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIV  561 (696)
T ss_pred             CHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceE
Confidence            999999998  4445  99999999999999999999999986

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=3.5e-58  Score=462.30  Aligned_cols=397  Identities=24%  Similarity=0.349  Sum_probs=323.9

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      .++.+.|.++++++|+++|++..++++||+||.++++++|++|.+                 +|+++||+|+++++|+++
T Consensus         7 ~~~~~~~~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~-----------------~Gv~~gd~V~v~~~n~~~   69 (563)
T PLN02860          7 AHICQCLTRLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLR-----------------LGLRNGDVVAIAALNSDL   69 (563)
T ss_pred             hHHHHHHHHHHHhcCCceEEecCCceeeHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEcCCCHH
Confidence            378899999999999999999989999999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHh-ccCC-c-cccCCCCCC-----CCCc
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS-KSGA-K-FSLIPPVPN-----VSSE  152 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~-~-~~~~~~~~~-----~~~~  152 (435)
                      +++++|||+++|++++|+++.++.+++.++++++++++++++++.......... ..+. . .........     ....
T Consensus        70 ~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  149 (563)
T PLN02860         70 YLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSF  149 (563)
T ss_pred             HHHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhc
Confidence            999999999999999999999999999999999999999998865433322211 1111 0 000000000     0000


Q ss_pred             ccccc---c--hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHH
Q 013869          153 TTVFD---Q--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF  227 (435)
Q Consensus       153 ~~~~~---~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~  227 (435)
                      .....   .  ..........++++++++|||||||.||+|.++|+++..+.......+++.++|+++...|++|..++.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~  229 (563)
T PLN02860        150 LTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLS  229 (563)
T ss_pred             cccchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHH
Confidence            00000   0  000111234578999999999999999999999999988777777778899999999999999999986


Q ss_pred             HHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEE
Q 013869          228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL  307 (435)
Q Consensus       228 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~  307 (435)
                       .++.++..|+++++.+++++..+++.          ++++++|++.++|+++..|++....      ......++++|.
T Consensus       230 -~~~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~------~~~~~~~~~lr~  292 (563)
T PLN02860        230 -SALAMLMVGACHVLLPKFDAKAALQA----------IKQHNVTSMITVPAMMADLISLTRK------SMTWKVFPSVRK  292 (563)
T ss_pred             -HHHHHHHcCceEEecCCCCHHHHHHH----------HHHhCCeeEEeChHHHHHHHHhhhh------hhccccccceeE
Confidence             58899999999999999999988888          6679999999999999999875321      112245789999


Q ss_pred             EEecCCCCCHHHHHHHHHHh-CCcccccccCccccchhccC-CCC----------------------CCCCCccceecCC
Q 013869          308 MMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNP-LRG----------------------ARKAGTVGNPLPG  363 (435)
Q Consensus       308 i~~~G~~l~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~-~~~----------------------~~~~~~~G~p~~~  363 (435)
                      +++||+++++++.+.|++.| +.++++.||+||++..++.. ...                      .....++|+|+++
T Consensus       293 ~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~  372 (563)
T PLN02860        293 ILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPH  372 (563)
T ss_pred             EEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCC
Confidence            99999999999999999998 78999999999987544311 100                      1123478999999


Q ss_pred             CeEEEecCCCCCCCCccceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          364 VQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       364 ~~~~i~d~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++++|++++    ++..|||+++|+.++.||+++++.+...++.+|||+|||+|++|+||++++.||.+|+|
T Consensus       373 ~~v~i~~~~----~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i  440 (563)
T PLN02860        373 VELKIGLDE----SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRI  440 (563)
T ss_pred             cEEEEecCC----CCceeEEEEecCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeeccccee
Confidence            999999865    45579999999999999999999999999889999999999999999999999999986

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=8.6e-58  Score=463.34  Aligned_cols=399  Identities=22%  Similarity=0.335  Sum_probs=314.3

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC-----CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeC
Q 013869            2 EVFKAAYKKGSMARDSVAIRAD-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~-----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~   76 (435)
                      ++.+.|.+++.++|+++|++..     .+++||+||.++++++|++|.+.                 |+++||+|+++++
T Consensus        40 ~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~-----------------Gv~~gd~Vai~~~  102 (614)
T PRK08180         40 RLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDR-----------------GLSAERPLMILSG  102 (614)
T ss_pred             cHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEecC
Confidence            6789999999999999999864     26899999999999999999994                 9999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCeEEeCCCCCC-----HHHHHHHHhcCCccEEEechh--hHHHHHHHHhccCCccccCCCCCCC
Q 013869           77 PSFEFVAGVLGTWFSGCIAVPLALSYP-----ESELLHVMHDSDISMVLSTED--YREVLQNVASKSGAKFSLIPPVPNV  149 (435)
Q Consensus        77 ~~~~~~~~~lA~~~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  149 (435)
                      |++++++++|||+++|++++|+++.++     .+++.++++.+++++++++..  ....+..... ....+.........
T Consensus       103 n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~  181 (614)
T PRK08180        103 NSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP-ADVEVVAVRGAVPG  181 (614)
T ss_pred             CCHHHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc-CCceEEEecCCCCC
Confidence            999999999999999999999999988     789999999999999999854  2222222111 11111111100000


Q ss_pred             ---CCccccccch----hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCC--CCCeeEEeecc
Q 013869          150 ---SSETTVFDQS----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT--SADQFLHCLPL  220 (435)
Q Consensus       150 ---~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~--~~~~~l~~~pl  220 (435)
                         ..........    .........++++++|+|||||||.||+|.+||+++..++......++..  ..+++++.+|+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl  261 (614)
T PRK08180        182 RAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPW  261 (614)
T ss_pred             cccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecch
Confidence               0000000000    00111234678999999999999999999999999998888877776654  56899999999


Q ss_pred             hhhhHHHHHHHHHHHcCCEEEEcCC-cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhh
Q 013869          221 HHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA  299 (435)
Q Consensus       221 ~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  299 (435)
                      +|..++...++.++..|+++++.+. +++..+...+..       +.++++|++.++|.++..|++..+..+    ....
T Consensus       262 ~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~-------i~~~~~t~~~~vP~~~~~l~~~~~~~~----~~~~  330 (614)
T PRK08180        262 NHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRN-------LREISPTVYFNVPKGWEMLVPALERDA----ALRR  330 (614)
T ss_pred             HHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHH-------HHHhCCcEEechHHHHHHHHHHHHhch----hhhh
Confidence            9999987778899999999999763 454433333322       677999999999999999987643221    1223


Q ss_pred             hhccccEEEEecCCCCCHHHHHHHHHH----hC--CcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCC
Q 013869          300 SAAKQLRLMMCGSSALPLPVMQQWETI----TG--HRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDES  373 (435)
Q Consensus       300 ~~l~~lr~i~~~G~~l~~~l~~~~~~~----~~--~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~  373 (435)
                      ..++++|.+++||+++++++.+.|.+.    ++  +++++.||+||++.+++.......+.+++|+|++|++++++|++ 
T Consensus       331 ~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d~~-  409 (614)
T PRK08180        331 RFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVPVG-  409 (614)
T ss_pred             hhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccccCCCCcccCccCCcEEEEecCC-
Confidence            457899999999999999999999875    33  67999999999986655433334567899999999999999863 


Q ss_pred             CCCCCccceEEEecCCccccccCCchhcccccccCCccccCceEEE----cCCccEEEecccccCC
Q 013869          374 GSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQ----DEDGYYIILGRKGIYF  435 (435)
Q Consensus       374 ~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~----~~dG~l~~~gR~~d~i  435 (435)
                           +.|||+++|+.++.||+++|+.+.+.|+++|||+|||+|++    |+||+++|.||++|+|
T Consensus       410 -----~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i  470 (614)
T PRK08180        410 -----GKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDF  470 (614)
T ss_pred             -----CCcEEEEecCccchhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhE
Confidence                 24999999999999999999999999988999999999999    4689999999998764

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.1e-58  Score=459.28  Aligned_cols=396  Identities=22%  Similarity=0.295  Sum_probs=327.6

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      ++.+.|.++++++||++|++++++++||+||.++++++|++|.+.                 |+++||+|+++++|++++
T Consensus        50 ~~~~~~~~~a~~~pd~~Al~~~~~~~Ty~el~~~~~~la~~L~~~-----------------gi~~gd~V~i~~~n~~~~  112 (549)
T PRK07788         50 PFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARGLLAL-----------------GVRAGDGVAVLARNHRGF  112 (549)
T ss_pred             hHHHHHHHHHHHCCCceEEEECCCceeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCCHHH
Confidence            578889999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCcccc-CCCCCCC---CCcccccc
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL-IPPVPNV---SSETTVFD  157 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~  157 (435)
                      ++++|||+++|++++|+++.++.+++.++++++++++++++++..+.+............. .......   .......+
T Consensus       113 ~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (549)
T PRK07788        113 VLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDD  192 (549)
T ss_pred             HHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccccCCcCcccHHH
Confidence            9999999999999999999999999999999999999999998877665542222111110 0000000   00000000


Q ss_pred             ch--hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHH
Q 013869          158 QS--QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLY  235 (435)
Q Consensus       158 ~~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~  235 (435)
                      ..  ..........++.++++|||||||.||+|.++|+++...+......+++...++++...|++|..++. .++.++.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~  271 (549)
T PRK07788        193 LIAGSSTAPLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWA-HLTLAMA  271 (549)
T ss_pred             HhcCCCCCCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHH-HHHHHHH
Confidence            00  00111223457889999999999999999999999999888888888899999999999999999986 4788999


Q ss_pred             cCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCC
Q 013869          236 AGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL  315 (435)
Q Consensus       236 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l  315 (435)
                      .|+++++.+.+++..+++.          +.++++|++.++|+++..+++..+..      .....++++|.+++||+++
T Consensus       272 ~G~~~v~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~~------~~~~~~~~lr~i~~gG~~l  335 (549)
T PRK07788        272 LGSTVVLRRRFDPEATLED----------IAKHKATALVVVPVMLSRILDLGPEV------LAKYDTSSLKIIFVSGSAL  335 (549)
T ss_pred             hCCEEEECCCCCHHHHHHH----------HHHhCCcEEEEHHHHHHHHHhCcccc------cCCCCCCceeEEEEeCCCC
Confidence            9999999998999998888          56689999999999999998753321      1233578999999999999


Q ss_pred             CHHHHHHHHHHhCCcccccccCccccchhccCCC-CCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCcccc
Q 013869          316 PLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKE  393 (435)
Q Consensus       316 ~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~g  393 (435)
                      ++++.+.|.+.++.++++.||+||++.++..... ....+.++|+|+++++++++|++++.++.+ .|||+++|+.++.|
T Consensus       336 ~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~g  415 (549)
T PRK07788        336 SPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGNGFPFEG  415 (549)
T ss_pred             CHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEEECCCcCCCCCCCeEEEEEeCCCcccc
Confidence            9999999999999999999999999865543322 234567899999999999999999887766 79999999999999


Q ss_pred             ccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          394 YWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       394 y~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |+++++.  .  ..+|||+|||+|++|+||++++.||.||+|
T Consensus       416 Y~~~~~~--~--~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i  453 (549)
T PRK07788        416 YTDGRDK--Q--IIDGLLSSGDVGYFDEDGLLFVDGRDDDMI  453 (549)
T ss_pred             ccCCCcc--c--ccCCceecCceEEEcCCCCEEEeccCcceE
Confidence            9998765  2  237999999999999999999999999986

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=3.1e-58  Score=439.86  Aligned_cols=405  Identities=25%  Similarity=0.398  Sum_probs=320.5

Q ss_pred             ChHHHHHHHhcccCCCeeEEEe--------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 013869            1 MEVFKAAYKKGSMARDSVAIRA--------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~--------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~   72 (435)
                      +|+++.|.+.+..+|+.+++-.        ..+.+||+|.++++.+++..|++                 +|+++++.|+
T Consensus        75 ~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~-----------------lG~~~~~~VG  137 (691)
T KOG1256|consen   75 LTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRK-----------------LGVKEDSKVG  137 (691)
T ss_pred             ccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHH-----------------hCCCCCceEE
Confidence            4789999999999999999965        23689999999999999999998                 5999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEec-hhhHHHHHHHHhc--cCC-c-cccCCCCC
Q 013869           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLST-EDYREVLQNVASK--SGA-K-FSLIPPVP  147 (435)
Q Consensus        73 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~~~--~~~-~-~~~~~~~~  147 (435)
                      |++-|++||++..+||...|.++|||....+++.+.++++.+.+.++|++ ++....+.+....  .+. + ++.+....
T Consensus       138 Iy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~  217 (691)
T KOG1256|consen  138 IYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPS  217 (691)
T ss_pred             EeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCc
Confidence            99999999999999999999999999999999999999999999999999 5555555554332  211 1 11111111


Q ss_pred             -CCCC---c-----------cccccchhhhhc-cCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHh---c--
Q 013869          148 -NVSS---E-----------TTVFDQSQAEKM-DGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---W--  206 (435)
Q Consensus       148 -~~~~---~-----------~~~~~~~~~~~~-~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~--  206 (435)
                       ....   .           ..... ...... .+..++|.|.|.|||||||.||||.+||+|+.+.+......   .  
T Consensus       218 ~~~~~~~~~~gv~v~S~~e~~~lG~-~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~  296 (691)
T KOG1256|consen  218 DELKEKAENNGVEVYSWDEFEELGK-KNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENA  296 (691)
T ss_pred             hhhhhhhhcCCeEEEEHHHHHhhcc-cccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccc
Confidence             0000   0           00000 011112 47789999999999999999999999999999866542221   1  


Q ss_pred             -cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHh
Q 013869          207 -EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ  285 (435)
Q Consensus       207 -~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  285 (435)
                       .....|.+++++||.|++..+...+ .+..|+++.+..+ |+......          ++..+||.+.++|.+|+++.+
T Consensus       297 ~~~~~~dv~lSyLPLAHi~er~~~~~-~~~~G~~IgF~~g-D~~~l~~d----------lk~lkPT~f~~VPRVl~riye  364 (691)
T KOG1256|consen  297 KATVGDDVYLSYLPLAHIFERVVELY-TFYIGAKIGFARG-DILKLTDD----------LKELKPTVFPGVPRVLERIYE  364 (691)
T ss_pred             cccccCceEEEeCcHHHHHHHHHHHh-HhhcccEEEEecC-ChHHHHHH----------HHHhCCcEEeccHhHHHHHHH
Confidence             2234699999999999999986444 4689999999885 66555555          556899999999999999987


Q ss_pred             hhccccHHHH-------------------------------------HHhhhhccccEEEEecCCCCCHHHHHHHHHHhC
Q 013869          286 GYEAMDTELQ-------------------------------------AASASAAKQLRLMMCGSSALPLPVMQQWETITG  328 (435)
Q Consensus       286 ~~~~~~~~~~-------------------------------------~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~  328 (435)
                      ...+.-.+.+                                     +.+......+|.+++|++|+++++...++..++
T Consensus       365 ~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g  444 (691)
T KOG1256|consen  365 GIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALG  444 (691)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcC
Confidence            6431111000                                     011112368999999999999999999999999


Q ss_pred             CcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecC--CCCCCCCccceEEEecCCccccccCCchhcccccc
Q 013869          329 HRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAED--ESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFT  406 (435)
Q Consensus       329 ~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~--~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~  406 (435)
                      +++++.||+||+++.++.........+++|.|.|+++++++|.  -+..+.+..||||++|++++.||+++|+.|++++|
T Consensus       445 ~~v~eGYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~id  524 (691)
T KOG1256|consen  445 CRVLEGYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAID  524 (691)
T ss_pred             ceeeecccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhc
Confidence            9999999999998444433333338899999999999999883  34445556799999999999999999999999999


Q ss_pred             cCCccccCceEEEcCCccEEEecccccCC
Q 013869          407 ADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       407 ~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +|||+||||+|+++++|.|++.||++++|
T Consensus       525 eDGWLhTGDiG~~~p~G~l~IidRkK~if  553 (691)
T KOG1256|consen  525 EDGWLHTGDIGEWDPNGTLKIIDRKKNIF  553 (691)
T ss_pred             cccccccccceeECCCccEEEEecccceE
Confidence            99999999999999999999999999986

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=3.6e-57  Score=461.37  Aligned_cols=399  Identities=20%  Similarity=0.293  Sum_probs=317.8

Q ss_pred             HHHHHHhcc-cCCCeeEEEeC------CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeC
Q 013869            4 FKAAYKKGS-MARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (435)
Q Consensus         4 ~~~~~~~~~-~~p~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~   76 (435)
                      .++|.+++. .+|+++|+++.      .+++||+||.++++++|++|++                 .|+++||+|+|+++
T Consensus        91 ~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~GdrV~i~~p  153 (666)
T PLN02654         91 YNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKD-----------------VGVKKGDAVVIYLP  153 (666)
T ss_pred             HHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence            456666775 48999999873      3689999999999999999999                 49999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHH---------HHHHHHhccC---Cc---cc
Q 013869           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE---------VLQNVASKSG---AK---FS  141 (435)
Q Consensus        77 ~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~---~~---~~  141 (435)
                      |++++++++|||+++|++++|+++.++.+++.++++.++++++|++.....         .+........   ..   +.
T Consensus       154 n~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (666)
T PLN02654        154 MLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICL  233 (666)
T ss_pred             CCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEE
Confidence            999999999999999999999999999999999999999999999876432         1222111110   00   00


Q ss_pred             cCCCCCCC---C-Cccc-----cc---cchh-hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHH-HHHHHHHhcc
Q 013869          142 LIPPVPNV---S-SETT-----VF---DQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA-QVQMLTEAWE  207 (435)
Q Consensus       142 ~~~~~~~~---~-~~~~-----~~---~~~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~-~~~~~~~~~~  207 (435)
                      ........   . ....     ..   ...+ ..+......+++++|+|||||||.||||+++|.+++. ........++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~  313 (666)
T PLN02654        234 TYENQLAMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFD  313 (666)
T ss_pred             EecccccccccccccccCCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcC
Confidence            00000000   0 0000     00   0000 0111234679999999999999999999999999754 4455566778


Q ss_pred             CCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCC----cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHH
Q 013869          208 YTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL  283 (435)
Q Consensus       208 ~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l  283 (435)
                      +.++|++++..|++|..+....++++|..|+++++.++    +++..+++.          |+++++|++.++|++++.|
T Consensus       314 ~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l  383 (666)
T PLN02654        314 YKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDI----------VDKYKVTIFYTAPTLVRSL  383 (666)
T ss_pred             CCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHH----------HHHhCCeEEEeCHHHHHHH
Confidence            99999999999999999987778999999999999874    467777777          6779999999999999999


Q ss_pred             HhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhC---CcccccccCccccchhccCCC--CCCCCCccc
Q 013869          284 IQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLR--GARKAGTVG  358 (435)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~~--~~~~~~~~G  358 (435)
                      .+....      .....++++||.++++|+++++++++.+.+.++   +++.+.||+||+++....+..  ...+++++|
T Consensus       384 ~~~~~~------~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G  457 (666)
T PLN02654        384 MRDGDE------YVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSAT  457 (666)
T ss_pred             HhhCcc------ccccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccC
Confidence            875321      122346789999999999999999999999997   689999999999865543322  134678899


Q ss_pred             eecCCCeEEEecCCCCCCCCc-cceEEEec--CCccccccCCchhccccccc--CCccccCceEEEcCCccEEEeccccc
Q 013869          359 NPLPGVQVKIAEDESGSDAAG-VGEICVKS--PSLFKEYWKLPKVTKDSFTA--DGFFKTGDTGKQDEDGYYIILGRKGI  433 (435)
Q Consensus       359 ~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~--~~~~~gy~~~~~~~~~~~~~--~g~~~TGD~g~~~~dG~l~~~gR~~d  433 (435)
                      +|++|++++|+|++|+.++++ .|||++++  |+++.||+++++.+...+..  +|||+|||+|++|+||+++++||+||
T Consensus       458 ~p~~g~~v~i~d~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd  537 (666)
T PLN02654        458 FPFFGVQPVIVDEKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDD  537 (666)
T ss_pred             CCCCCceEEEECCCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccC
Confidence            999999999999999888777 69999999  78999999999888776533  78999999999999999999999999


Q ss_pred             CC
Q 013869          434 YF  435 (435)
Q Consensus       434 ~i  435 (435)
                      +|
T Consensus       538 ~I  539 (666)
T PLN02654        538 VI  539 (666)
T ss_pred             eE
Confidence            86

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=6.1e-57  Score=458.05  Aligned_cols=396  Identities=26%  Similarity=0.392  Sum_probs=318.1

Q ss_pred             hHHHHHHHhcccCCCeeEEEe--------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEE
Q 013869            2 EVFKAAYKKGSMARDSVAIRA--------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI   73 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~--------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i   73 (435)
                      |+++.|.++++++|+++|++.        ..+++||+||.+++.++|++|++                 +|+++||+|++
T Consensus        26 t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~-----------------~Gi~~gd~V~i   88 (632)
T PRK07529         26 STYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHS-----------------LGVGPGDVVAF   88 (632)
T ss_pred             CHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEE
Confidence            688999999999999999985        35799999999999999999999                 49999999999


Q ss_pred             EeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhh-----HHHHHHHHhccCCc--cccCCCC
Q 013869           74 VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSGAK--FSLIPPV  146 (435)
Q Consensus        74 ~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~--~~~~~~~  146 (435)
                      +++|++++++++|||+++| +++|+++.++.+++.++++.+++++++++..+     .+.+.......+..  +..+...
T Consensus        89 ~~~n~~e~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (632)
T PRK07529         89 LLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLA  167 (632)
T ss_pred             ECCCCHHHHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCc
Confidence            9999999999999999999 56999999999999999999999999997543     33333332222211  1111110


Q ss_pred             CCCC-------------------Ccc-ccccch--hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHH
Q 013869          147 PNVS-------------------SET-TVFDQS--QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE  204 (435)
Q Consensus       147 ~~~~-------------------~~~-~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~  204 (435)
                      ....                   ... ......  .........++++++++|||||||.||+|.++|+++..+......
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~  247 (632)
T PRK07529        168 RYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGAL  247 (632)
T ss_pred             ccccccccccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHH
Confidence            0000                   000 000000  001112346799999999999999999999999999988888777


Q ss_pred             hccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcc------hhHHHHHHHhhcCCCCCccccccceeccccH
Q 013869          205 AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS------VRGIWQRWRESYPVNGNRAGEAITAFTGVPT  278 (435)
Q Consensus       205 ~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~  278 (435)
                      .+++.+++++++.+|++|..+.+..++.++..|+++++.++..      ...+++.          ++++++|++.++|+
T Consensus       248 ~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~  317 (632)
T PRK07529        248 LLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKI----------VERYRINFLSGVPT  317 (632)
T ss_pred             hcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHH----------HHHhCCeEEEeHHH
Confidence            8888999999999999999998878999999999999987422      1344455          67799999999999


Q ss_pred             HHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCC-CCCCCCcc
Q 013869          279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTV  357 (435)
Q Consensus       279 ~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~~~~~~  357 (435)
                      ++..+++...         ...+++++|.+++||+++++++.++|++.+++++++.||+||++.+++.... .....+++
T Consensus       318 ~~~~l~~~~~---------~~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~sv  388 (632)
T PRK07529        318 VYAALLQVPV---------DGHDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSV  388 (632)
T ss_pred             HHHHHHhCcc---------cCCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCCccccccCCCc
Confidence            9999987521         2236789999999999999999999999999999999999999876654332 23467899


Q ss_pred             ceecCCCeEEEe--cCCC---CCCCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEeccc
Q 013869          358 GNPLPGVQVKIA--EDES---GSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK  431 (435)
Q Consensus       358 G~p~~~~~~~i~--d~~~---~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~  431 (435)
                      |+|+|+++++++  |+++   ..++.+ .|||+++|++++.||++++ .+...|..+|||+|||+|++|+||++++.||.
T Consensus       389 G~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~-~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~  467 (632)
T PRK07529        389 GLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTGDLGRIDADGYFWLTGRA  467 (632)
T ss_pred             ccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCc-cccccccCCCceEcCcEEEEcCCceEEEEecc
Confidence            999999999885  5656   455555 7999999999999999865 45666667899999999999999999999999


Q ss_pred             ccCC
Q 013869          432 GIYF  435 (435)
Q Consensus       432 ~d~i  435 (435)
                      ||+|
T Consensus       468 ~d~i  471 (632)
T PRK07529        468 KDLI  471 (632)
T ss_pred             cCEE
Confidence            9986

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1e-56  Score=450.98  Aligned_cols=401  Identities=27%  Similarity=0.409  Sum_probs=333.5

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +|+.+.|.++++.+|+++|++..++++||+||.+++.++|..|.+.                .|+++|++|+++++|+++
T Consensus        10 ~tl~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~v~~~a~~L~~~----------------~g~~~g~~V~i~~~~~~~   73 (546)
T PRK08314         10 TSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQE----------------CGVRKGDRVLLYMQNSPQ   73 (546)
T ss_pred             CCHHHHHHHHHHHcCCCcceeecCceecHHHHHHHHHHHHHHHHHh----------------hCCCCCCEEEEECCCChH
Confidence            4788999999999999999999999999999999999999999983                389999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCC-------CC---
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN-------VS---  150 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---  150 (435)
                      ++++++||+++|++++|+++..+.+++.++++.+++++++++.+..+.+.............+.....       ..   
T Consensus        74 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (546)
T PRK08314         74 FVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPA  153 (546)
T ss_pred             HHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCccc
Confidence            99999999999999999999999999999999999999999998877665543321111000000000       00   


Q ss_pred             --------------Cccccc---cchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCe
Q 013869          151 --------------SETTVF---DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ  213 (435)
Q Consensus       151 --------------~~~~~~---~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~  213 (435)
                                    ......   ............++++++++|||||||.||+|.++|++++.++.......++...|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~  233 (546)
T PRK08314        154 WLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESV  233 (546)
T ss_pred             ccccccccccccccccccHHHHhcccCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCce
Confidence                          000000   000011223456789999999999999999999999999999988888888999999


Q ss_pred             eEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHH
Q 013869          214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTE  293 (435)
Q Consensus       214 ~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  293 (435)
                      +++.+|++|..|+...++.++..|+++++.+.+++..++..          ++++++|++.++|+++..+++...     
T Consensus       234 ~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~ll~~~~-----  298 (546)
T PRK08314        234 VLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARL----------IERYRVTHWTNIPTMVVDFLASPG-----  298 (546)
T ss_pred             EEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHH----------HHHhcCceecccHHHHHHHHhCCC-----
Confidence            99999999999988888999999999999999998888887          566899999999999998886422     


Q ss_pred             HHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecC-C
Q 013869          294 LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAED-E  372 (435)
Q Consensus       294 ~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~  372 (435)
                         ....+++++|.+++||+++++++++.|.+.++.++++.||+||++..............++|.|+++++++|+|+ +
T Consensus       299 ---~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~  375 (546)
T PRK08314        299 ---LAERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVIDPET  375 (546)
T ss_pred             ---ccccCchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccceecCCCcCCCCCccCcccCCeEEEEEeCCC
Confidence               122356789999999999999999999999999999999999998766544333345678999999999999995 4


Q ss_pred             CCCCCCc-cceEEEecCCccccccCCchhcccccc---cCCccccCceEEEcCCccEEEecccccCC
Q 013869          373 SGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFT---ADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       373 ~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~---~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +...+.+ .|||+++|+.++.||+++++.+++.|.   +++||+|||+|+++++|++++.||.||+|
T Consensus       376 ~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i  442 (546)
T PRK08314        376 LEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMI  442 (546)
T ss_pred             CcCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhE
Confidence            6666555 799999999999999999999888774   24699999999999999999999999975

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-56  Score=454.92  Aligned_cols=400  Identities=22%  Similarity=0.270  Sum_probs=310.3

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCC------cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEE
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQ------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV   74 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~   74 (435)
                      .++.+.|.++++++||++|+++.+      +++||+||.++++++|++|.+.                 |+++||+|+++
T Consensus        49 ~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-----------------Gv~~gd~V~i~  111 (624)
T PRK12582         49 RSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDL-----------------GLDPGRPVMIL  111 (624)
T ss_pred             cCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEe
Confidence            368899999999999999998743      6899999999999999999984                 99999999999


Q ss_pred             eCCCHHHHHHHHHHHHhCCeEEeCCCCCCH-----HHHHHHHhcCCccEEEechhh--HHHHHHHHhccCCccccCCCCC
Q 013869           75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPE-----SELLHVMHDSDISMVLSTEDY--REVLQNVASKSGAKFSLIPPVP  147 (435)
Q Consensus        75 ~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~~~~~~~  147 (435)
                      ++|++++++++|||+++|++++|+++.++.     +++.++++.++++++|++...  ...+.... .....+..+....
T Consensus       112 ~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~i~~~~~~  190 (624)
T PRK12582        112 SGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALD-LLDVTVVHVTGPG  190 (624)
T ss_pred             cCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhh-hcCceEEEEcCCC
Confidence            999999999999999999999999999885     899999999999999998642  22222211 1111111111100


Q ss_pred             CC---CCccccccch----hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCC---CCeeEEe
Q 013869          148 NV---SSETTVFDQS----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS---ADQFLHC  217 (435)
Q Consensus       148 ~~---~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~---~~~~l~~  217 (435)
                      ..   ..........    .........++++++++|||||||.||+|.+||+++..+............   .++++.+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~  270 (624)
T PRK12582        191 EGIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDW  270 (624)
T ss_pred             cccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEe
Confidence            00   0000000000    001112346789999999999999999999999999888776655544443   5799999


Q ss_pred             ecchhhhHHHHHHHHHHHcCCEEEEcCC-cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHH
Q 013869          218 LPLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA  296 (435)
Q Consensus       218 ~pl~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  296 (435)
                      +|++|.+++...++.++..|+++++.++ +++..+...+..       ++++++|++.++|.++..|++..+..+    .
T Consensus       271 lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~-------i~~~~~t~~~~vP~~~~~l~~~~~~~~----~  339 (624)
T PRK12582        271 MPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRN-------LREISPTVYGNVPAGYAMLAEAMEKDD----A  339 (624)
T ss_pred             chHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHH-------HHhcCCeEEeccCHHHHHHHHHHhhCH----H
Confidence            9999999987777889999999999863 344333333332       677999999999999999976543211    1


Q ss_pred             HhhhhccccEEEEecCCCCCHHHHHHHHHHh------CCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEec
Q 013869          297 ASASAAKQLRLMMCGSSALPLPVMQQWETIT------GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE  370 (435)
Q Consensus       297 ~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~------~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d  370 (435)
                      .....++++|.+++||+++++++.+.|.+.+      ++++++.||+||++.+++.......+.+++|+|++|+++++++
T Consensus       340 ~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~  419 (624)
T PRK12582        340 LRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAP  419 (624)
T ss_pred             HHHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEcc
Confidence            2234578999999999999999999998863      3679999999999876553222335567999999999999974


Q ss_pred             CCCCCCCCccceEEEecCCccccccCCchhcccccccCCccccCceEEE-c---CCccEEEecccccCC
Q 013869          371 DESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQ-D---EDGYYIILGRKGIYF  435 (435)
Q Consensus       371 ~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~-~---~dG~l~~~gR~~d~i  435 (435)
                      .      +..|||+++|++++.||+++|+.+.+.|+++|||+|||+|++ |   +||++++.||+||+|
T Consensus       420 ~------G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i  482 (624)
T PRK12582        420 V------GDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDF  482 (624)
T ss_pred             C------CCceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhE
Confidence            3      236999999999999999999999999988999999999998 4   469999999999875

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=4.1e-56  Score=446.17  Aligned_cols=396  Identities=24%  Similarity=0.365  Sum_probs=328.3

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCC------cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEe
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQ------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~   75 (435)
                      ++.+.|.+.++.+|+++|+++.+      +.+||+||.++++++|++|.+.                 |+++||+|++++
T Consensus        25 ~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~-----------------g~~~g~~Val~~   87 (547)
T PRK13295         25 TINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARL-----------------GVGRGDVVSCQL   87 (547)
T ss_pred             CHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEEC
Confidence            67889999999999999999865      8999999999999999999994                 999999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhh-----HHHHHHHHhccCC--ccccCCCCCC
Q 013869           76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSGA--KFSLIPPVPN  148 (435)
Q Consensus        76 ~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~  148 (435)
                      +|++++++++|||+++|++++|+++.++.+++.++++.++++++++++.+     .+.+.........  .+..+.. ..
T Consensus        88 ~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  166 (547)
T PRK13295         88 PNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGG-DG  166 (547)
T ss_pred             CCChHHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecC-CC
Confidence            99999999999999999999999999999999999999999999998754     2222222222211  1111110 00


Q ss_pred             CCCcccc---------ccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeec
Q 013869          149 VSSETTV---------FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLP  219 (435)
Q Consensus       149 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p  219 (435)
                      .......         .+............+++++++|||||||.||+|.++|+++..++......+++.+.++++...|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p  246 (547)
T PRK13295        167 ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASP  246 (547)
T ss_pred             ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecC
Confidence            0000000         0000001112345689999999999999999999999999999888888889999999999999


Q ss_pred             chhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhh
Q 013869          220 LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA  299 (435)
Q Consensus       220 l~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  299 (435)
                      ++|..+++..++.++..|+++++.+.+++..+++.          ++++++|++.++|+++..+....+.        ..
T Consensus       247 ~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~----------l~~~~vt~~~~~p~~~~~l~~~~~~--------~~  308 (547)
T PRK13295        247 MAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAEL----------IRTEGVTFTMASTPFLTDLTRAVKE--------SG  308 (547)
T ss_pred             chhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhcccc--------cC
Confidence            99999988889999999999999999999888888          5668999999999999999875322        23


Q ss_pred             hhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCC--CCCCCccceecCCCeEEEecCCCCCCC
Q 013869          300 SAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG--ARKAGTVGNPLPGVQVKIAEDESGSDA  377 (435)
Q Consensus       300 ~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d~~~~~~~  377 (435)
                      ..++++|.+++||+++++++.+.|.+.++.++++.||+||++.+.+.....  .....++|+|+++++++|+|++++..+
T Consensus       309 ~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~  388 (547)
T PRK13295        309 RPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPLP  388 (547)
T ss_pred             CCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECCCCCCCC
Confidence            457889999999999999999999999999999999999998665533221  233568899999999999999888877


Q ss_pred             Cc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          378 AG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       378 ~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      .+ .|||+++|+.++.||+++++.+...  .+|||+|||+|++++||.+++.||.+|+|
T Consensus       389 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TGD~~~~~~~g~l~~~gR~~~~i  445 (547)
T PRK13295        389 AGQIGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTGDLARIDADGYIRISGRSKDVI  445 (547)
T ss_pred             CCCCCeEEEEcCcccccccCCccccccC--CCCCeecceEEEEcCCceEEEEeccCCeE
Confidence            66 7999999999999999999888776  47899999999999999999999999975

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.5e-56  Score=445.08  Aligned_cols=400  Identities=29%  Similarity=0.444  Sum_probs=338.1

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +++.+.|.+.++.+|+++|+++.++++||+||++++.++|..|.+.                 |+++||+|+++++|+++
T Consensus         5 ~~i~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~-----------------gv~~g~~V~l~~~~~~~   67 (513)
T PRK07656          5 MTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAAL-----------------GIGKGDRVAIWAPNSPH   67 (513)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEeCCCceeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCChH
Confidence            4688999999999999999999999999999999999999999984                 99999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCc--cccCCCCCCCC------Cc
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPNVS------SE  152 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~  152 (435)
                      ++++++||+++|++++|+++..+.+++..++++++++++++++................  +..........      ..
T Consensus        68 ~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (513)
T PRK07656         68 WVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTF  147 (513)
T ss_pred             HHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccccCccccccH
Confidence            99999999999999999999999999999999999999999988776655543322211  11111100000      00


Q ss_pred             cccccch-hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHH
Q 013869          153 TTVFDQS-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALL  231 (435)
Q Consensus       153 ~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~  231 (435)
                      ....... ..........+++++++|||||||.||+|.++|.++...+......+++.++++++..+|++|.+++...++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (513)
T PRK07656        148 TDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVN  227 (513)
T ss_pred             HHHHhcCCCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHH
Confidence            0000000 011233457789999999999999999999999999999988888889999999999999999999887899


Q ss_pred             HHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEec
Q 013869          232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (435)
Q Consensus       232 ~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~  311 (435)
                      .++..|+++++.+.+++..+++.          ++++++|++.++|+++..+++.....        ...++++|.+++|
T Consensus       228 ~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~~--------~~~~~~l~~v~~~  289 (513)
T PRK07656        228 APLMRGATILPLPVFDPDEVFRL----------IETERITVLPGPPTMYNSLLQHPDRS--------AEDLSSLRLAVTG  289 (513)
T ss_pred             HHHHcCceEEecCcCCHHHHHHH----------HHHhCCeEEechHHHHHHHHcCCCcC--------CCCccceeeEEec
Confidence            99999999999998899888888          56689999999999999998864432        2356889999999


Q ss_pred             CCCCCHHHHHHHHHHhCC-cccccccCccccchhccCCC-CCCC--CCccceecCCCeEEEecCCCCCCCCc-cceEEEe
Q 013869          312 SSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPLR-GARK--AGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVK  386 (435)
Q Consensus       312 G~~l~~~l~~~~~~~~~~-~l~~~YG~tE~~~~~~~~~~-~~~~--~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~  386 (435)
                      |+++++++++.|.+.++. .+++.||+||++++++.... ....  ..++|+|+++++++|+|+++..++.+ .|||+++
T Consensus       290 g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~  369 (513)
T PRK07656        290 AASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVR  369 (513)
T ss_pred             CCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCCCccccCCCcEEEEECCCCCCCCCCCceEEEEE
Confidence            999999999999999988 99999999999766653322 2222  67899999999999999988887776 7999999


Q ss_pred             cCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          387 SPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       387 ~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |+.++.||++++..+...+.++|||+|||+|+++++|.+++.||.+|+|
T Consensus       370 ~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i  418 (513)
T PRK07656        370 GPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMF  418 (513)
T ss_pred             cchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceE
Confidence            9999999999999998888778999999999999999999999999975

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=3.7e-56  Score=453.09  Aligned_cols=399  Identities=21%  Similarity=0.314  Sum_probs=317.9

Q ss_pred             HHHHHHhcccCCCeeEEEeCC------cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCC
Q 013869            4 FKAAYKKGSMARDSVAIRADQ------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (435)
Q Consensus         4 ~~~~~~~~~~~p~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~   77 (435)
                      +++|.++++++|+++|++..+      +++||+||.+++.++|+.|++                 +|+++||+|+++++|
T Consensus        60 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~gd~V~i~~~n  122 (625)
T TIGR02188        60 YNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKS-----------------LGVKKGDRVAIYMPM  122 (625)
T ss_pred             HHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCC
Confidence            566778888899999998643      489999999999999999999                 499999999999999


Q ss_pred             CHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhh---------HHHHHHHHhccC---CccccCCC
Q 013869           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSG---AKFSLIPP  145 (435)
Q Consensus        78 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~---~~~~~~~~  145 (435)
                      +++++++++||+++|++++|+++.++.+++.++++.++++++|+++..         .+.+.......+   ..+..+..
T Consensus       123 ~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (625)
T TIGR02188       123 IPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRR  202 (625)
T ss_pred             CHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcC
Confidence            999999999999999999999999999999999999999999998753         233333333222   11111111


Q ss_pred             CCCC-C----Cccccc----cchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHH-HHHhccCCCCCeeE
Q 013869          146 VPNV-S----SETTVF----DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM-LTEAWEYTSADQFL  215 (435)
Q Consensus       146 ~~~~-~----~~~~~~----~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~l  215 (435)
                      .... .    ......    ............++++++|+|||||||.||+|.++|.+++..... ....+++.++|+++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~  282 (625)
T TIGR02188       203 TGNPVPWVEGRDVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFW  282 (625)
T ss_pred             CCCCcCccccccccHHHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEE
Confidence            0000 0    000000    000011122456789999999999999999999999997655443 34456788999999


Q ss_pred             EeecchhhhHHHHHHHHHHHcCCEEEEcCC----cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhcccc
Q 013869          216 HCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD  291 (435)
Q Consensus       216 ~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  291 (435)
                      +..|++|..+..+.++.++..|+++++.+.    +++..+++.          ++++++|++.++|++++.|.+..... 
T Consensus       283 ~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~~-  351 (625)
T TIGR02188       283 CTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEI----------IEKHKVTIFYTAPTAIRALMRLGDEW-  351 (625)
T ss_pred             ECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHH----------HHHhCCeEEEeCHHHHHHHHhcCCcc-
Confidence            999999998876678999999999999764    367777777          66799999999999999998753221 


Q ss_pred             HHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhC---CcccccccCccccchhccCCC--CCCCCCccceecCCCeE
Q 013869          292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQV  366 (435)
Q Consensus       292 ~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~~--~~~~~~~~G~p~~~~~~  366 (435)
                           ....+++++|.++++|+++++++++.+.+.++   +++++.||+||+++.++....  ...+++++|+|++|+++
T Consensus       352 -----~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~  426 (625)
T TIGR02188       352 -----VKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEP  426 (625)
T ss_pred             -----cccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceE
Confidence                 12346789999999999999999999999885   789999999999876543322  23467889999999999


Q ss_pred             EEecCCCCCCC-Cc-cceEEEec--CCccccccCCchhccccccc--CCccccCceEEEcCCccEEEecccccCC
Q 013869          367 KIAEDESGSDA-AG-VGEICVKS--PSLFKEYWKLPKVTKDSFTA--DGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       367 ~i~d~~~~~~~-~~-~Gel~v~~--~~~~~gy~~~~~~~~~~~~~--~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +|+|++++..+ .+ .|||+++|  |+++.||+++++.+.+.+..  +|||+|||+|++|+||++++.||+||+|
T Consensus       427 ~i~d~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i  501 (625)
T TIGR02188       427 AVVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVI  501 (625)
T ss_pred             EEECCCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEE
Confidence            99999888876 44 79999999  68999999999887777643  7899999999999999999999999986

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.2e-56  Score=454.11  Aligned_cols=401  Identities=19%  Similarity=0.219  Sum_probs=310.3

Q ss_pred             HHHHHHhccc--CCCeeEEEeC------CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEe
Q 013869            4 FKAAYKKGSM--ARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (435)
Q Consensus         4 ~~~~~~~~~~--~p~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~   75 (435)
                      .++|.++++.  +|+++|++..      .+++||+||.++++++|+.|++                 +|+++||+|++++
T Consensus        62 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~GDrV~i~~  124 (647)
T PTZ00237         62 YNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLN-----------------LNISKNDNVLIYM  124 (647)
T ss_pred             HHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEC
Confidence            4566677654  7999999873      3589999999999999999999                 4999999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechh---------hHHHHHHHHhccC---CccccC
Q 013869           76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED---------YREVLQNVASKSG---AKFSLI  143 (435)
Q Consensus        76 ~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~~~~~~~~~~---~~~~~~  143 (435)
                      +|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++.         +.+.+.+......   ..+..+
T Consensus       125 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~  204 (647)
T PTZ00237        125 ANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITL  204 (647)
T ss_pred             CCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEE
Confidence            9999999999999999999999999999999999999999999999752         2333333322111   111111


Q ss_pred             CCCC--------------CCCCccccccc---------hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHH-HHHHH
Q 013869          144 PPVP--------------NVSSETTVFDQ---------SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQV  199 (435)
Q Consensus       144 ~~~~--------------~~~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~-l~~~~  199 (435)
                      ....              .........+.         ..........++++++|+|||||||.||||+++|.+ +....
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~  284 (647)
T PTZ00237        205 FRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLK  284 (647)
T ss_pred             EcCCcccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHH
Confidence            0000              00000000000         000112245678999999999999999999999998 44433


Q ss_pred             HHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCc--c----hhHHHHHHHhhcCCCCCcccccccee
Q 013869          200 QMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF--S----VRGIWQRWRESYPVNGNRAGEAITAF  273 (435)
Q Consensus       200 ~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~--~----~~~~~~~~~~~~~~~~~i~~~~~t~~  273 (435)
                      ............+++++..|++|..+.. .++.++..|+++++.+..  .    +..+++.          ++++++|++
T Consensus       285 ~~~~~~~~~~~~d~~~~~~~~~w~~~~~-~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~----------i~~~~vt~~  353 (647)
T PTZ00237        285 YYWRSIIEKDIPTVVFSHSSIGWVSFHG-FLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNT----------IEKHKVTHT  353 (647)
T ss_pred             HHHHHhcCCCCCcEEEEcCCCceEeeHH-HHHHHHhCCcEEEEeCCCCCCCCCchHHHHHH----------HHHhCeEEE
Confidence            3334445677789999999999987664 588999999999997651  2    4556666          677999999


Q ss_pred             ccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCC-CCC
Q 013869          274 TGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GAR  352 (435)
Q Consensus       274 ~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~  352 (435)
                      .++|++++.|++......   ......++++||.++++|+++++++.+.+.+.+++++++.||+||+++.++.... ...
T Consensus       354 ~~~P~~~~~l~~~~~~~~---~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~  430 (647)
T PTZ00237        354 LTLPKTIRYLIKTDPEAT---IIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYGHINI  430 (647)
T ss_pred             EeCHHHHHHHHhhCcccc---ccccccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhhccCCCCCC
Confidence            999999999987421100   0012336789999999999999999999999999999999999999865443222 223


Q ss_pred             CCCccceecCCCeEEEecCCCCCCCCc-cceEEEecC---CccccccCCchhccccccc-CCccccCceEEEcCCccEEE
Q 013869          353 KAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSP---SLFKEYWKLPKVTKDSFTA-DGFFKTGDTGKQDEDGYYII  427 (435)
Q Consensus       353 ~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~---~~~~gy~~~~~~~~~~~~~-~g~~~TGD~g~~~~dG~l~~  427 (435)
                      ..+++|+|+++++++|+|++|+.++.+ .|||++++|   +++.||+++++.+.+.|.. +|||+|||+|++|+||++++
T Consensus       431 ~~~s~G~p~~g~~~~i~d~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i  510 (647)
T PTZ00237        431 PYNATGVPSIFIKPSILSEDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTI  510 (647)
T ss_pred             CCCCCccCcCCceEEEECCCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEE
Confidence            347899999999999999999887665 799999986   7899999999998877754 79999999999999999999


Q ss_pred             ecccccCC
Q 013869          428 LGRKGIYF  435 (435)
Q Consensus       428 ~gR~~d~i  435 (435)
                      +||+||+|
T Consensus       511 ~GR~dd~i  518 (647)
T PTZ00237        511 VSRSDDQI  518 (647)
T ss_pred             EeccCCEE
Confidence            99999986

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=5.7e-56  Score=444.30  Aligned_cols=400  Identities=23%  Similarity=0.343  Sum_probs=329.1

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeC--CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869            1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~   78 (435)
                      +|+.+.+.+++.++|+++|+++.  ++++||.||.++++++|++|.+.                 |+++||+|+++++|+
T Consensus        23 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~-----------------g~~~gd~V~i~~~~~   85 (537)
T PLN02246         23 LPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKL-----------------GIRQGDVVMLLLPNC   85 (537)
T ss_pred             CcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEECCCC
Confidence            57889999999999999999974  57899999999999999999994                 999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCC-CCCccc-cc
Q 013869           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN-VSSETT-VF  156 (435)
Q Consensus        79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~  156 (435)
                      ++++++++||+++|++++|+++.++.+++..+++.+++++++++....+.+..........+..+..... ...... ..
T Consensus        86 ~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (537)
T PLN02246         86 PEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLHFSELTQ  165 (537)
T ss_pred             hHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCceEEEeCCCCCCceeHHHHhc
Confidence            9999999999999999999999999999999999999999999988877665544321111221111100 000000 00


Q ss_pred             cchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHH----hccCCCCCeeEEeecchhhhHHHHHHHH
Q 013869          157 DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVHGLFNALLA  232 (435)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~l~~~pl~~~~g~~~~~~~  232 (435)
                      ......+.....++++++++|||||||.||+|.++|+++...+.....    .+.+.++++++..+|++|..++...++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~  245 (537)
T PLN02246        166 ADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLC  245 (537)
T ss_pred             CCCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHH
Confidence            000001122345789999999999999999999999999887766544    4568899999999999999998777888


Q ss_pred             HHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecC
Q 013869          233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (435)
Q Consensus       233 ~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G  312 (435)
                      ++..|+++++.+.+++..+++.          ++++++|++.++|+++..|++..+        .....++++|.+++||
T Consensus       246 ~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~--------~~~~~~~~lr~~~~gg  307 (537)
T PLN02246        246 GLRVGAAILIMPKFEIGALLEL----------IQRHKVTIAPFVPPIVLAIAKSPV--------VEKYDLSSIRMVLSGA  307 (537)
T ss_pred             HHhcCCEEEEeCCCCHHHHHHH----------HHHhCceEEEcchHHHHHHhcCcc--------ccccCccceeEEEEec
Confidence            9999999999999998888888          666899999999999999986532        1223568899999999


Q ss_pred             CCCCHHHHHHHHHHh-CCcccccccCccccchhccCC-----CCCCCCCccceecCCCeEEEecC-CCCCCCCc-cceEE
Q 013869          313 SALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPL-----RGARKAGTVGNPLPGVQVKIAED-ESGSDAAG-VGEIC  384 (435)
Q Consensus       313 ~~l~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~-----~~~~~~~~~G~p~~~~~~~i~d~-~~~~~~~~-~Gel~  384 (435)
                      +++++++.+.|.+.+ +..+++.||+||++.+++...     .....++++|+|+++++++|+|+ .+..++.+ .|||+
T Consensus       308 ~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~  387 (537)
T PLN02246        308 APLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEIC  387 (537)
T ss_pred             CcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEE
Confidence            999999999999998 678999999999986654321     11234568999999999999994 56666665 79999


Q ss_pred             EecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          385 VKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       385 v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++|+.++.||+++++.+...++.+|||+|||+|++++||++++.||.+|+|
T Consensus       388 v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i  438 (537)
T PLN02246        388 IRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELI  438 (537)
T ss_pred             EECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceE
Confidence            999999999999999999999889999999999999999999999999975

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.7e-56  Score=443.27  Aligned_cols=395  Identities=19%  Similarity=0.279  Sum_probs=324.6

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      ++.+.|.++++++|+++|+++.++++||+||.++++++|++|.+.                 |+++|++|+++++|++++
T Consensus        44 ~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~A~~L~~~-----------------g~~~g~~V~i~~~n~~~~  106 (537)
T PRK13382         44 GPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQAL-----------------PIGEPRVVGIMCRNHRGF  106 (537)
T ss_pred             CHHHHHHHHHHhCCCCeEEEeCCCeecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEecCcHHH
Confidence            578889999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC--ccccCCCCCCCCCccccccch
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSETTVFDQS  159 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  159 (435)
                      ++.+|||+++|++++|+++.++.+++.++++++++++++++.+....+.......+.  ....+................
T Consensus       107 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (537)
T PRK13382        107 VEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDHDLTVEVLIAAH  186 (537)
T ss_pred             HHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCcccccHHHHhhcc
Confidence            999999999999999999999999999999999999999998877665543322111  111110100000000000000


Q ss_pred             hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCE
Q 013869          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (435)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~  239 (435)
                      . ........++.++++|||||||.||+|.++|++++.........+.+..+++++...|++|..++. .++.++..|++
T Consensus       187 ~-~~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~-~~~~~l~~g~~  264 (537)
T PRK13382        187 A-GQRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFS-QLVLAASLACT  264 (537)
T ss_pred             C-cCCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHH-HHHHHHhcCcE
Confidence            0 001123468899999999999999999999999888888877788888999999999999999985 68899999999


Q ss_pred             EEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHH
Q 013869          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (435)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l  319 (435)
                      +++.+.+++..+++.          ++++++|++.++|+++..+++....      .....+++++|.+++||+++++++
T Consensus       265 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~------~~~~~~~~~lr~i~~gG~~l~~~~  328 (537)
T PRK13382        265 IVTRRRFDPEATLDL----------IDRHRATGLAVVPVMFDRIMDLPAE------VRNRYSGRSLRFAAASGSRMRPDV  328 (537)
T ss_pred             EEECCCcCHHHHHHH----------HHHhCCEEEEehHHHHHHHHcCCch------hcccCCccceeEEEEcCCCCCHHH
Confidence            999999999998888          5669999999999999999875321      111234578999999999999999


Q ss_pred             HHHHHHHhCCcccccccCccccchhccCCC-CCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccccccCC
Q 013869          320 MQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKL  397 (435)
Q Consensus       320 ~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~~  397 (435)
                      ++.|.+.++.++++.||+||++.+++.... .....+++|+|+++++++|+|++++..+.+ .|||+++|+.++.||+  
T Consensus       329 ~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~--  406 (537)
T PRK13382        329 VIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVPTGEVGTIFVRNDTQFDGYT--  406 (537)
T ss_pred             HHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccccCcCcEEEEECCCCCCCCCCCeeEEEEEcCCcccCcc--
Confidence            999999999999999999999876653322 234567999999999999999998887777 6999999999999998  


Q ss_pred             chhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          398 PKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       398 ~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++.+.. + .+|||+|||++++++||++++.||+||+|
T Consensus       407 ~~~~~~-~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~i  442 (537)
T PRK13382        407 SGSTKD-F-HDGFMASGDVGYLDENGRLFVVGRDDEMI  442 (537)
T ss_pred             ccchhh-c-cCCCEeeCceEEEeCCCcEEEecccccee
Confidence            444443 3 27999999999999999999999999986

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.6e-56  Score=445.93  Aligned_cols=400  Identities=25%  Similarity=0.400  Sum_probs=324.8

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      |+.+.|.+.++++|+++|++..++.+||+||.++++++|+.|.+.                .|+++||+|+++++|++++
T Consensus        25 ~~~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~----------------~gi~~gd~Vai~~~n~~~~   88 (562)
T PRK05677         25 NIQAVLKQSCQRFADKPAFSNLGKTLTYGELYKLSGAFAAWLQQH----------------TDLKPGDRIAVQLPNVLQY   88 (562)
T ss_pred             cHHHHHHHHHHhCCCCeeEEECCceeeHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEECCCCHHH
Confidence            688999999999999999999999999999999999999999863                3999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCC------------
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV------------  149 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  149 (435)
                      ++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+.............+......            
T Consensus        89 ~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (562)
T PRK05677         89 PVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAV  168 (562)
T ss_pred             HHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccc
Confidence            99999999999999999999999999999999999999998877665544432211111111000000            


Q ss_pred             -------------CCcccccc-----chhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhcc--CC
Q 013869          150 -------------SSETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE--YT  209 (435)
Q Consensus       150 -------------~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~  209 (435)
                                   .......+     ...........++++++++|||||||.||+|.++|+++..........+.  +.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~  248 (562)
T PRK05677        169 VKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLN  248 (562)
T ss_pred             hhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCC
Confidence                         00000000     00001112345789999999999999999999999999887766555443  33


Q ss_pred             C-CCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcC-CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhh
Q 013869          210 S-ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY  287 (435)
Q Consensus       210 ~-~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  287 (435)
                      . .+++++.+|++|..++...++.++..|++.++.+ ++++..+++.          ++++++|++.++|+++..+++..
T Consensus       249 ~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~  318 (562)
T PRK05677        249 EGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKE----------LGKWKFSGFVGLNTLFVALCNNE  318 (562)
T ss_pred             CCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHH----------HHHcCceEEecHHHHHHHHHhCc
Confidence            2 3688999999999998767788888888776665 4677777777          66799999999999999887642


Q ss_pred             ccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEE
Q 013869          288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVK  367 (435)
Q Consensus       288 ~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~  367 (435)
                      .        .....++++|.+++||+++++++++.|.+.+++++++.||+||++.+++.......+.+++|+|+++++++
T Consensus       319 ~--------~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~~~~v~  390 (562)
T PRK05677        319 A--------FRKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCK  390 (562)
T ss_pred             c--------cccCChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCcceeecCccCCCCCccCccCCCCEEE
Confidence            1        11234678999999999999999999999999999999999999876654433344567899999999999


Q ss_pred             EecCCCCCCCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          368 IAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       368 i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |+|+++..++.+ .|||+++|+.++.||+++++.+.+.|.++|||+|||+|++|+||.+++.||.+|+|
T Consensus       391 i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i  459 (562)
T PRK05677        391 VIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMI  459 (562)
T ss_pred             EECCCCCCCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeE
Confidence            999988887776 79999999999999999999999999889999999999999999999999999975

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-55  Score=438.46  Aligned_cols=391  Identities=26%  Similarity=0.431  Sum_probs=330.7

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      .+.+.|.++|+.+||++|+++.++.+||+||+++++++|.+|++.                .|+++|++|+++++|++++
T Consensus         3 ~~~~~~~~~a~~~p~~~a~~~~~~~~ty~~l~~~~~~la~~L~~~----------------~g~~~~~~V~i~~~~~~~~   66 (496)
T PRK06839          3 GIAYWIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYE----------------LNVKKGERIAILSQNSLEY   66 (496)
T ss_pred             cHHHHHHHHHHHCCCCeEEEECCceEEHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEECCCCHHH
Confidence            467889999999999999999999999999999999999999863                5899999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC-ccccCCCCCCCCCccccccchh
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFSLIPPVPNVSSETTVFDQSQ  160 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  160 (435)
                      +++++||+++|++++|+++.++.+++..+++.++++.++++++..+.+......... ....+.......      .. .
T Consensus        67 ~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~  139 (496)
T PRK06839         67 IVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISITSLKEIE------DR-K  139 (496)
T ss_pred             HHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEecchHhhh------cc-C
Confidence            999999999999999999999999999999999999999999887766554433211 111111110000      00 0


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEE
Q 013869          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (435)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~  240 (435)
                      ........++++++++|||||||.||+|.++|+++..+.......+++..+++++..+|++|..++...++.++..|+++
T Consensus       140 ~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~  219 (496)
T PRK06839        140 IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVI  219 (496)
T ss_pred             CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEE
Confidence            01122345689999999999999999999999998877776677778899999999999999999877778899999999


Q ss_pred             EEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHH
Q 013869          241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM  320 (435)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~  320 (435)
                      ++++.+++..+++.          ++++++|++.++|++++.+++....        ...+++++|.+++||+++++++.
T Consensus       220 ~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~lr~~~~gG~~~~~~~~  281 (496)
T PRK06839        220 IVPRKFEPTKALSM----------IEKHKVTVVMGVPTIHQALINCSKF--------ETTNLQSVRWFYNGGAPCPEELM  281 (496)
T ss_pred             EEccCCCHHHHHHH----------HHhhCCeEEEehHHHHHHHHhCccc--------ccCCCcccceEEECCCCCCHHHH
Confidence            99999999998888          6669999999999999999876322        22357899999999999999999


Q ss_pred             HHHHHHhCCcccccccCccccchhccCC--CCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccccccCC
Q 013869          321 QQWETITGHRLLERYGMTEFVMAISNPL--RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKL  397 (435)
Q Consensus       321 ~~~~~~~~~~l~~~YG~tE~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~~  397 (435)
                      +.|.+. ++++.+.||+||++.+++...  ......+++|+|+++++++|+|+++..++.+ .|||+++|+.++.||+++
T Consensus       282 ~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~  360 (496)
T PRK06839        282 REFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNR  360 (496)
T ss_pred             HHHHHh-CCeeEeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECCCcCCCCCCCceEEEEECCCcchhhcCC
Confidence            999987 899999999999986544222  2234567899999999999999988887666 799999999999999999


Q ss_pred             chhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          398 PKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       398 ~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++.+...+ .+|||+|||+|+++++|++++.||.+|+|
T Consensus       361 ~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~d~i  397 (496)
T PRK06839        361 PDATEETI-QDGWLCTGDLARVDEDGFVYIVGRKKEMI  397 (496)
T ss_pred             hHHHHHHH-cCCCeeecceEEEcCCCcEEEeccccceE
Confidence            99988777 48999999999999999999999999975

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=9.2e-56  Score=449.66  Aligned_cols=399  Identities=19%  Similarity=0.243  Sum_probs=313.5

Q ss_pred             HHHHHHhcccCCCeeEEEe------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCC
Q 013869            4 FKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (435)
Q Consensus         4 ~~~~~~~~~~~p~~~al~~------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~   77 (435)
                      +++|.++++.+|+++|+++      ..+++||+||.++++++|++|++                 +|+++||+|+++++|
T Consensus        55 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~Gd~V~i~~~n  117 (628)
T TIGR02316        55 HNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRA-----------------LGVGRGDRVLIYMPM  117 (628)
T ss_pred             HHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCC
Confidence            5678888888999999997      24689999999999999999999                 499999999999999


Q ss_pred             CHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhh---------HHHHHHHHhcc---CCccccCCC
Q 013869           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKS---GAKFSLIPP  145 (435)
Q Consensus        78 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~---~~~~~~~~~  145 (435)
                      +++++++++||+++|++++|+++.++.+++.++++.++++++|+++..         .+.+.......   ...+..+..
T Consensus       118 ~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~  197 (628)
T TIGR02316       118 IAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDR  197 (628)
T ss_pred             CHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeC
Confidence            999999999999999999999999999999999999999999998642         22232222211   111221111


Q ss_pred             CC-CC---C-Ccccccc---ch--hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHH-HHHHHHhccCCCCCee
Q 013869          146 VP-NV---S-SETTVFD---QS--QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQ-VQMLTEAWEYTSADQF  214 (435)
Q Consensus       146 ~~-~~---~-~~~~~~~---~~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~-~~~~~~~~~~~~~~~~  214 (435)
                      .. ..   . ......+   ..  ...+.....++++++|+|||||||.||||.++|.++... .......+++.++|++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~  277 (628)
T TIGR02316       198 GLAPMRLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVM  277 (628)
T ss_pred             CCCCcCcccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEE
Confidence            00 00   0 0000000   00  001111246789999999999999999999999997543 4445556788999999


Q ss_pred             EEeecchhhhHHHHHHHHHHHcCCEEEEcCC----cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccc
Q 013869          215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM  290 (435)
Q Consensus       215 l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  290 (435)
                      ++..|++|..++...++.+|..|+++++.+.    +++..+++.          ++++++|+++.+|++++.|.+.... 
T Consensus       278 ~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~-  346 (628)
T TIGR02316       278 FSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSI----------VERYGVRTMFSAPTAIRVLKKQDAA-  346 (628)
T ss_pred             EEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHhcCCc-
Confidence            9999999999876679999999999999874    356667777          6779999999999999988764221 


Q ss_pred             cHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCC----CCCCCCccceecCCCeE
Q 013869          291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR----GARKAGTVGNPLPGVQV  366 (435)
Q Consensus       291 ~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~----~~~~~~~~G~p~~~~~~  366 (435)
                           .....++++||.+++||+++++++.+.+.+.++.++++.||+||++..++....    .....+++|+|++|+++
T Consensus       347 -----~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v  421 (628)
T TIGR02316       347 -----WLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHL  421 (628)
T ss_pred             -----ccccCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceE
Confidence                 123346899999999999999999999999999999999999999854332211    12345789999999999


Q ss_pred             EEecC-CCCCCCCc-cceEEEecC---CccccccCCchhccccc---ccCCccccCceEEEcCCccEEEecccccCC
Q 013869          367 KIAED-ESGSDAAG-VGEICVKSP---SLFKEYWKLPKVTKDSF---TADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       367 ~i~d~-~~~~~~~~-~Gel~v~~~---~~~~gy~~~~~~~~~~~---~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +|+|+ +++.++.+ .|||+++||   ..+.||+++++.+.+.+   ..++||+|||+|++|+||+++++||.||+|
T Consensus       422 ~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~i  498 (628)
T TIGR02316       422 RVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVI  498 (628)
T ss_pred             EEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceE
Confidence            99997 67777665 799999998   56799999987776654   246799999999999999999999999986

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=1.1e-55  Score=443.85  Aligned_cols=394  Identities=24%  Similarity=0.343  Sum_probs=318.4

Q ss_pred             HHHHHHHhcccCCCeeEEEeCC--cccCHHHHHHHHHHHHHHHhh-CCCCCccccccccccccccCCCCCeEEEEeCCCH
Q 013869            3 VFKAAYKKGSMARDSVAIRADQ--KSYSYDQLASSALRISSLLCS-NDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (435)
Q Consensus         3 i~~~~~~~~~~~p~~~al~~~~--~~~Ty~el~~~~~~la~~L~~-~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~   79 (435)
                      +.+.+... ..+|+++|+++..  .++||+||.++++++|++|.+ .                 |+++||+|+++++|++
T Consensus        42 ~~~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~-----------------G~~~gd~V~i~~~n~~  103 (560)
T PLN02574         42 AVSFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVM-----------------GVRQGDVVLLLLPNSV  103 (560)
T ss_pred             HHHHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEECCCcc
Confidence            34455554 6789999999853  479999999999999999998 5                 9999999999999999


Q ss_pred             HHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCC-------CCc
Q 013869           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV-------SSE  152 (435)
Q Consensus        80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  152 (435)
                      ++++++|||+++|++++|++|.++.+++.++++.+++++++++++..+.+...    ...+..+......       ...
T Consensus       104 ~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  179 (560)
T PLN02574        104 YFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL----GVPVIGVPENYDFDSKRIEFPKF  179 (560)
T ss_pred             hHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc----CCcEEecCcccccccCccCcccH
Confidence            99999999999999999999999999999999999999999998876655432    1111111100000       000


Q ss_pred             cccc-cchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHh----ccC-CCCCeeEEeecchhhhHH
Q 013869          153 TTVF-DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA----WEY-TSADQFLHCLPLHHVHGL  226 (435)
Q Consensus       153 ~~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~----~~~-~~~~~~l~~~pl~~~~g~  226 (435)
                      .... ............++++++++|||||||.||+|.++|+++...+..+...    ... ...++++..+|++|..++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~  259 (560)
T PLN02574        180 YELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGL  259 (560)
T ss_pred             HHHhhcCCcccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHH
Confidence            0000 0000111223457899999999999999999999999998877765432    222 356788999999999998


Q ss_pred             HHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccE
Q 013869          227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLR  306 (435)
Q Consensus       227 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr  306 (435)
                      ...++.++..|+++++.+.+++..+++.          +++|++|++.++|+++..+++....       ....+++++|
T Consensus       260 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~-------~~~~~~~~lr  322 (560)
T PLN02574        260 SLFVVGLLSLGSTIVVMRRFDASDMVKV----------IDRFKVTHFPVVPPILMALTKKAKG-------VCGEVLKSLK  322 (560)
T ss_pred             HHHHHHHHhcCCEEEEecCCCHHHHHHH----------HHHcCCeEEecCCHHHHHHHhCccc-------cccCccccce
Confidence            7777888899999999999999998888          6669999999999999999875321       1234578999


Q ss_pred             EEEecCCCCCHHHHHHHHHHh-CCcccccccCccccchhccC--CCCCCCCCccceecCCCeEEEec-CCCCCCCCc-cc
Q 013869          307 LMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNP--LRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-VG  381 (435)
Q Consensus       307 ~i~~~G~~l~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~--~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~~-~G  381 (435)
                      .+++||++++++++++|.+.+ ++++++.||+||++.+++..  ........++|+|.++++++|+| +++...+.+ .|
T Consensus       323 ~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~G  402 (560)
T PLN02574        323 QVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCG  402 (560)
T ss_pred             EEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCe
Confidence            999999999999999999988 68999999999998655422  12224567899999999999999 667776666 79


Q ss_pred             eEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          382 EICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       382 el~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |||++|++++.||+++++.+.+.|+.+|||+|||+|++|+||++++.||.+|+|
T Consensus       403 ei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i  456 (560)
T PLN02574        403 ELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEII  456 (560)
T ss_pred             EEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhhe
Confidence            999999999999999999999999889999999999999999999999999986

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=5.2e-56  Score=451.64  Aligned_cols=404  Identities=23%  Similarity=0.315  Sum_probs=306.2

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC----C-----cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 013869            2 EVFKAAYKKGSMARDSVAIRAD----Q-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~   72 (435)
                      |+.++|.+.++++|+++|+...    +     +.+||+|+.++++++|++|.+                 .|+++||+|+
T Consensus        43 t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-----------------~Gv~~gd~V~  105 (660)
T PLN02430         43 TAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRA-----------------SGAEPGSRVG  105 (660)
T ss_pred             CHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEE
Confidence            6889999999999999999642    1     247999999999999999999                 4999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHH-HHHHHHhccCC--ccccCCCCCCC
Q 013869           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE-VLQNVASKSGA--KFSLIPPVPNV  149 (435)
Q Consensus        73 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~  149 (435)
                      |+++|+++|++++|||+++|+++||+++.++++++.++++.++++++|++..... .+.......+.  .++.+......
T Consensus       106 i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~  185 (660)
T PLN02430        106 IYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEE  185 (660)
T ss_pred             EEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChH
Confidence            9999999999999999999999999999999999999999999999999876432 22221111111  11111110000


Q ss_pred             C------Ccc---ccccch-----hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHh-----ccCCC
Q 013869          150 S------SET---TVFDQS-----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA-----WEYTS  210 (435)
Q Consensus       150 ~------~~~---~~~~~~-----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~-----~~~~~  210 (435)
                      .      ...   ...+..     .........++++++++|||||||.||||.+||+++...+......     .++.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~  265 (660)
T PLN02430        186 ESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTH  265 (660)
T ss_pred             HhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCC
Confidence            0      000   000000     0011123457899999999999999999999999998877665432     14678


Q ss_pred             CCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccc
Q 013869          211 ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM  290 (435)
Q Consensus       211 ~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  290 (435)
                      .|++++++|++|.++... .+.++..|+++++... ++..+++.          +.+++||++.++|.+|+.+.+.....
T Consensus       266 ~d~~ls~lPl~H~~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~~----------l~~~~pt~~~~vP~~~~~l~~~i~~~  333 (660)
T PLN02430        266 DDVYLSFLPLAHILDRMI-EEYFFRKGASVGYYHG-DLNALRDD----------LMELKPTLLAGVPRVFERIHEGIQKA  333 (660)
T ss_pred             CCEEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC-ChhhHHHH----------HHHhCCcEEEecHHHHHHHHHHHHHH
Confidence            899999999999999875 5567899999988654 56666666          56689999999999999887643211


Q ss_pred             cHH-------------------------------------HHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccc
Q 013869          291 DTE-------------------------------------LQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLE  333 (435)
Q Consensus       291 ~~~-------------------------------------~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~  333 (435)
                      ...                                     ..+......+++|.+++||+++++++.+.++...+..+++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~  413 (660)
T PLN02430        334 LQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQ  413 (660)
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeee
Confidence            000                                     0000011126899999999999999866555443468999


Q ss_pred             cccCccccchhccC-CCCCCCCCccceecCCCeEEEecC--CCCC-CCC-ccceEEEecCCccccccCCchhcccccccC
Q 013869          334 RYGMTEFVMAISNP-LRGARKAGTVGNPLPGVQVKIAED--ESGS-DAA-GVGEICVKSPSLFKEYWKLPKVTKDSFTAD  408 (435)
Q Consensus       334 ~YG~tE~~~~~~~~-~~~~~~~~~~G~p~~~~~~~i~d~--~~~~-~~~-~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~  408 (435)
                      .||+||+++.++.. .......+++|+|.++++++++|.  .+.. .+. ..|||+++|++++.||+++|+.|.+.| .+
T Consensus       414 ~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~-~d  492 (660)
T PLN02430        414 GYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KD  492 (660)
T ss_pred             ecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhh-hc
Confidence            99999998655433 222345689999999999999872  2322 222 269999999999999999999999998 58


Q ss_pred             CccccCceEEEcCCccEEEecccccCC
Q 013869          409 GFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       409 g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |||+|||+|++|+||+|++.||++|+|
T Consensus       493 Gw~~TGDig~~d~dG~l~i~gR~kd~i  519 (660)
T PLN02430        493 GWFHTGDIGEILPNGVLKIIDRKKNLI  519 (660)
T ss_pred             cceeccceEEECCCCcEEEEEcccccE
Confidence            999999999999999999999999986

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=2.4e-55  Score=436.93  Aligned_cols=396  Identities=35%  Similarity=0.571  Sum_probs=333.0

Q ss_pred             hHHHHHHHhcccCCCeeEEEe-CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRA-DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~-~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      ++.+.|.+++ .+|+++|+.. +++.+||+||.++++++|.+|++.                 |+++||+|+++++|+++
T Consensus         4 ~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~~-----------------g~~~gd~v~i~~~~~~e   65 (504)
T PRK07514          4 NLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVAL-----------------GVKPGDRVAVQVEKSPE   65 (504)
T ss_pred             cHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence            5788899999 9999999997 678999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCc-cccCCCCCCCCCccccccch
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FSLIPPVPNVSSETTVFDQS  159 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  159 (435)
                      ++++++||+++|++++|+++..+.+++..+++.++++++++++...+.+.......... +..+................
T Consensus        66 ~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (504)
T PRK07514         66 ALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTGSLLEAAAAAP  145 (504)
T ss_pred             HHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCCcccHHHhhhhcC
Confidence            99999999999999999999999999999999999999999988777665544332221 11111100000000000000


Q ss_pred             hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCE
Q 013869          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (435)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~  239 (435)
                      ..........+++++++|||||||.||+|.++|+++...+......+++.+++++++.+|++|..+++..++.++..|++
T Consensus       146 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~  225 (504)
T PRK07514        146 DDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGAS  225 (504)
T ss_pred             cccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcE
Confidence            11112345678999999999999999999999999999988888888899999999999999999988788899999999


Q ss_pred             EEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHH
Q 013869          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (435)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l  319 (435)
                      +++.+.+++..+++.+            .++|++.++|.++..+++...        .....++++|.++.||+++++++
T Consensus       226 ~~~~~~~~~~~~~~~i------------~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gg~~~~~~~  285 (504)
T PRK07514        226 MIFLPKFDPDAVLALM------------PRATVMMGVPTFYTRLLQEPR--------LTREAAAHMRLFISGSAPLLAET  285 (504)
T ss_pred             EEECCCCCHHHHHHHH------------HhheeeecHHHHHHHHHcCCC--------CCcccccceeeEEecCCCCCHHH
Confidence            9999998888888874            379999999999999987522        12235688999999999999999


Q ss_pred             HHHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEec-CCCCCCCCc-cceEEEecCCccccccCC
Q 013869          320 MQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-VGEICVKSPSLFKEYWKL  397 (435)
Q Consensus       320 ~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~~-~Gel~v~~~~~~~gy~~~  397 (435)
                      .+.|.+.++.++++.||+||++..............++|.|+++++++|+| ++++.++.+ .|||+++|+.++.||+++
T Consensus       286 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~  365 (504)
T PRK07514        286 HREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRM  365 (504)
T ss_pred             HHHHHHHhCCcceeecccccccccccCCccccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCC
Confidence            999999999999999999999876654443344567899999999999999 777777776 699999999999999999


Q ss_pred             chhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          398 PKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       398 ~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++.+.+.|..+|||+|||+|+++++|++++.||.+|+|
T Consensus       366 ~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i  403 (504)
T PRK07514        366 PEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLI  403 (504)
T ss_pred             chhhhhhcccCCCeeecceEEEcCCccEEEeccccceE
Confidence            99999999888999999999999999999999999975

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-55  Score=449.38  Aligned_cols=399  Identities=22%  Similarity=0.334  Sum_probs=316.3

Q ss_pred             HHHHHHhcccCCCeeEEEeCC------cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCC
Q 013869            4 FKAAYKKGSMARDSVAIRADQ------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (435)
Q Consensus         4 ~~~~~~~~~~~p~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~   77 (435)
                      .+.|.++++++|+++|++..+      +++||+||.+++.++|++|++.                 |+++||+|+++++|
T Consensus        70 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~-----------------Gv~~gd~V~i~~~n  132 (637)
T PRK00174         70 YNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSL-----------------GVKKGDRVAIYMPM  132 (637)
T ss_pred             HHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCC
Confidence            456778888999999999633      4799999999999999999994                 99999999999999


Q ss_pred             CHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhH---------HHHHHHHhccCC--ccccCCCC
Q 013869           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR---------EVLQNVASKSGA--KFSLIPPV  146 (435)
Q Consensus        78 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~--~~~~~~~~  146 (435)
                      ++++++++|||+++|++++|+++.++.+++.++++.++++++|+++...         +.+.......+.  .+..+...
T Consensus       133 ~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (637)
T PRK00174        133 IPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRT  212 (637)
T ss_pred             CHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCC
Confidence            9999999999999999999999999999999999999999999986532         222222221111  11111100


Q ss_pred             C-CCC--C--c---cc-cccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHH-HHHhccCCCCCeeEE
Q 013869          147 P-NVS--S--E---TT-VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM-LTEAWEYTSADQFLH  216 (435)
Q Consensus       147 ~-~~~--~--~---~~-~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~l~  216 (435)
                      . ...  .  .   .. ........+......+++++++|||||||.||+|.++|++++.+... ....+++.++|++++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~  292 (637)
T PRK00174        213 GGDVDWVEGRDLWWHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWC  292 (637)
T ss_pred             CCCcCcCCCCcccHHHHHhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEE
Confidence            0 000  0  0   00 00000011122456789999999999999999999999998655443 344568888999999


Q ss_pred             eecchhhhHHHHHHHHHHHcCCEEEEcCC----cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccH
Q 013869          217 CLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDT  292 (435)
Q Consensus       217 ~~pl~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  292 (435)
                      ..|++|..+....++.++..|+++++.+.    +++..+++.          ++++++|++.++|++++.|++.....  
T Consensus       293 ~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~~--  360 (637)
T PRK00174        293 TADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEV----------IDKHKVTIFYTAPTAIRALMKEGDEH--  360 (637)
T ss_pred             cCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHH----------HHhcCCeEEeecHHHHHHHHhcCCcc--
Confidence            99999999887779999999999999763    366777777          67799999999999999998753221  


Q ss_pred             HHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhC---CcccccccCccccchhccCCC--CCCCCCccceecCCCeEE
Q 013869          293 ELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQVK  367 (435)
Q Consensus       293 ~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~~--~~~~~~~~G~p~~~~~~~  367 (435)
                          ....++++||.++++|+++++++++.+.+.++   +++++.||+||++..++....  ...+.+++|+|++|++++
T Consensus       361 ----~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~  436 (637)
T PRK00174        361 ----PKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPA  436 (637)
T ss_pred             ----cccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEE
Confidence                12245789999999999999999999998885   789999999999875543322  123467899999999999


Q ss_pred             EecCCCCCCCCc-cceEEEec--CCccccccCCchhcccccc--cCCccccCceEEEcCCccEEEecccccCC
Q 013869          368 IAEDESGSDAAG-VGEICVKS--PSLFKEYWKLPKVTKDSFT--ADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       368 i~d~~~~~~~~~-~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |+|++++.++.+ .|||+++|  |+++.||+++++.+.+.+.  .+|||+|||+|++|+||++++.||+||+|
T Consensus       437 i~d~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~i  509 (637)
T PRK00174        437 VVDEEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVL  509 (637)
T ss_pred             EECCCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEE
Confidence            999999888766 79999999  6899999999988777652  37899999999999999999999999986

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-55  Score=454.94  Aligned_cols=381  Identities=21%  Similarity=0.291  Sum_probs=313.8

Q ss_pred             hHHHHHHHhccc--CCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCH
Q 013869            2 EVFKAAYKKGSM--ARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (435)
Q Consensus         2 ~i~~~~~~~~~~--~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~   79 (435)
                      |+.+.|.+++..  +||++|++.. ..+||+||+++++++|++|.+.                 |+++|++|+|+++|++
T Consensus         5 ~~~~~~~~~a~~~~~pd~~a~~~~-~~~Ty~eL~~~~~~lA~~L~~~-----------------g~~~g~~V~i~~~~~~   66 (705)
T PRK06060          5 NLAGLLAEQASEAGWYDRPAFYAA-DVVTHGQIHDGAARLGEVLRNR-----------------GLSSGDRVLLCLPDSP   66 (705)
T ss_pred             CHHHHHHHHHhhccCCCceEEEec-CceeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCH
Confidence            577888888875  7999999875 4899999999999999999994                 9999999999999999


Q ss_pred             HHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccch
Q 013869           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQS  159 (435)
Q Consensus        80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (435)
                      +++++++||+++|++++|++|.++.+++.++++.+++++++++.+....+...      .+...   .....  .... .
T Consensus        67 ~~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------~~~~~---~~~~~--~~~~-~  134 (705)
T PRK06060         67 DLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS------RVAEA---AELMS--EAAR-V  134 (705)
T ss_pred             HHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc------ccchh---hhhhh--hccc-c
Confidence            99999999999999999999999999999999999999999988765433211      00000   00000  0000 0


Q ss_pred             hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHH-HhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCC
Q 013869          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA  238 (435)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~  238 (435)
                      .........++++++++|||||||.||+|.++|+++...+.... ..+++.+.++++...|++|..++...++.++..|+
T Consensus       135 ~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~  214 (705)
T PRK06060        135 APGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGG  214 (705)
T ss_pred             CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCC
Confidence            00011234568999999999999999999999999988776654 45788899999999999999887667889999999


Q ss_pred             EEEEcC-CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCH
Q 013869          239 TVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (435)
Q Consensus       239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~  317 (435)
                      ++++.+ .+++...+..          +.++++|++.++|+++..+++...          ...++++|.+++||+++++
T Consensus       215 ~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~l~~~~~----------~~~~~slr~i~~gGe~l~~  274 (705)
T PRK06060        215 SAVINSAPVTPEAAAIL----------SARFGPSVLYGVPNFFARVIDSCS----------PDSFRSLRCVVSAGEALEL  274 (705)
T ss_pred             EEEEeCCCCCHHHHHHH----------HHhcCCeEEeeHHHHHHHHHHhcc----------cccccceeEEEEecCcCCH
Confidence            999987 4566666555          667999999999999999886422          2346889999999999999


Q ss_pred             HHHHHHHHHh-CCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCcccccc
Q 013869          318 PVMQQWETIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYW  395 (435)
Q Consensus       318 ~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~  395 (435)
                      ++.+.|.+.+ +.++++.||+||++.++...........++|+|+++++++|+|++++.++.+ .||||++|++++.||+
T Consensus       275 ~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~~GEl~i~g~~v~~GY~  354 (705)
T PRK06060        275 GLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYW  354 (705)
T ss_pred             HHHHHHHHHcCCCceEeeeeccccCceEEeccCCCCCcCcccccCCCcEEEEECCCCCCCCCCCceEEEEccchhhhhhh
Confidence            9999999998 4899999999999865443322234567899999999999999998887776 7999999999999999


Q ss_pred             CCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          396 KLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       396 ~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++++.+.   ..+|||+|||+|++++||++++.||.||+|
T Consensus       355 ~~~~~~~---~~~~~~~TGDl~~~~~dG~l~~~GR~dd~i  391 (705)
T PRK06060        355 NRPDSPV---ANEGWLDTRDRVCIDSDGWVTYRCRADDTE  391 (705)
T ss_pred             CCCcccc---cCCCcEECCeeEEECCCceEEEecccCceE
Confidence            9988653   357999999999999999999999999985

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=2.9e-55  Score=438.24  Aligned_cols=400  Identities=21%  Similarity=0.282  Sum_probs=328.4

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +++.++|.++++++|+++|+++.++++||+||.++++++|.+|.+                 .|+++|++|+++++|+++
T Consensus        23 ~~l~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~-----------------~g~~~g~~V~i~~~~~~~   85 (527)
T TIGR02275        23 KPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTK-----------------LGIGQGDTAVVQLPNIAE   85 (527)
T ss_pred             CcHHHHHHHHHHHCCCceEEEeCCceecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCcHH
Confidence            367899999999999999999999999999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHH-----HHHHHHhccCC-ccccCCCCCC-CC-Cc
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE-----VLQNVASKSGA-KFSLIPPVPN-VS-SE  152 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~-~~-~~  152 (435)
                      ++++++||+++|++++++++..+.+++.++++.++++.++++.....     .........+. ....+..... .. ..
T Consensus        86 ~~~~~la~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (527)
T TIGR02275        86 FYIVFFALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVEAELF  165 (527)
T ss_pred             HHHHHHHHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCcchhh
Confidence            99999999999999999999999999999999999999999865321     11222111111 1111100000 00 00


Q ss_pred             cccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHH-HHH
Q 013869          153 TTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALL  231 (435)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~  231 (435)
                      ................++++++++|||||||.||+|.++|+++..++......+.+..+++++..+|++|.+++.. .++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~  245 (527)
T TIGR02275       166 LWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGAL  245 (527)
T ss_pred             HHhhCcCccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHH
Confidence            0000000111123456789999999999999999999999999999888888888999999999999999998764 478


Q ss_pred             HHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEec
Q 013869          232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (435)
Q Consensus       232 ~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~  311 (435)
                      .++..|+++++.+.+++..++..          ++++++|++.++|.++..+++..+.        ....++++|.+++|
T Consensus       246 ~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~--------~~~~~~~lr~~~~g  307 (527)
T TIGR02275       246 GVFYAGGCVVLAPDPSPTDCFPL----------IERHKVTVTALVPPAVALWMQAASK--------SRYDLSSLKLLQVG  307 (527)
T ss_pred             HHHhcCCeEEECCCCCHHHHHHH----------HHHhCCeEEEecHHHHHHHHhCccc--------cCCCccceEEEEEc
Confidence            89999999999998888888887          6669999999999999998876432        22356889999999


Q ss_pred             CCCCCHHHHHHHHHHhCCcccccccCccccchhccC-CCCCCCCCccceec-CCCeEEEecCCCCCCCCc-cceEEEecC
Q 013869          312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP-LRGARKAGTVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKSP  388 (435)
Q Consensus       312 G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~-~~~~~~~~~~G~p~-~~~~~~i~d~~~~~~~~~-~Gel~v~~~  388 (435)
                      |++++.++.+.+.+.++.++++.||+||++...... ........++|+|+ ++++++++|++++..+.+ .|||+++|+
T Consensus       308 G~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~Gei~v~g~  387 (527)
T TIGR02275       308 GAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGETGMLLTRGP  387 (527)
T ss_pred             CCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCccccccccCCCCCCCCceEEEECCCCCCCCCCCceEEEecCC
Confidence            999999999999999999999999999965433321 11223456889999 589999999988877666 799999999


Q ss_pred             CccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          389 SLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       389 ~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      .++.||+++++.+...|+++|||+|||+|++++||++++.||.+|+|
T Consensus       388 ~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i  434 (527)
T TIGR02275       388 YTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQI  434 (527)
T ss_pred             ccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEeccccee
Confidence            99999999999999999889999999999999999999999999976

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=7.4e-56  Score=456.47  Aligned_cols=394  Identities=25%  Similarity=0.367  Sum_probs=312.8

Q ss_pred             ChHHHHHHHhcccCCC-eeEEEeC-CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869            1 MEVFKAAYKKGSMARD-SVAIRAD-QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~-~~al~~~-~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~   78 (435)
                      .|+.+.|.++++++|+ ++|+.+. .+.+||+||.++++++|++|.+                  .+++||+|+++++|+
T Consensus       204 ~t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~------------------~~~~gd~Val~~~n~  265 (718)
T PRK08043        204 ETLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEK------------------YSVEGERIGLMLPNA  265 (718)
T ss_pred             CCHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHH------------------hcCCCceEEEEcCCc
Confidence            3678999999999998 6888763 4789999999999999999988                  358999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHH--HHHhccCC-ccccCCCCCCCCCcccc
Q 013869           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ--NVASKSGA-KFSLIPPVPNVSSETTV  155 (435)
Q Consensus        79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~  155 (435)
                      +++++++|||+++|++++|+++.++.+++.++++.+++++++++.+..+...  ........ ....+............
T Consensus       266 ~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  345 (718)
T PRK08043        266 TISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKDDVTTADK  345 (718)
T ss_pred             HHHHHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhhhhhhcchhHH
Confidence            9999999999999999999999999999999999999999999987654311  01111100 11111100000000000


Q ss_pred             ----ccc-hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHH
Q 013869          156 ----FDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL  230 (435)
Q Consensus       156 ----~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~  230 (435)
                          .+. ..........++++++++|||||||.||+|.++|+++.+.+......+++.++|++++.+|++|..++...+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~  425 (718)
T PRK08043        346 LWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGL  425 (718)
T ss_pred             HHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHH
Confidence                000 000111234678999999999999999999999999999888888888899999999999999999987778


Q ss_pred             HHHHHcCCEEEEcCC-cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEE
Q 013869          231 LAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM  309 (435)
Q Consensus       231 ~~~l~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~  309 (435)
                      +.++..|+++++.+. ++...+++.          +.++++|++.++|+++..+.+..          ...+++++|.++
T Consensus       426 ~~~l~~G~~vv~~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~~~~l~~~~----------~~~~~~~lr~i~  485 (718)
T PRK08043        426 FTPLLTGAEVFLYPSPLHYRIVPEL----------VYDRNCTVLFGTSTFLGNYARFA----------NPYDFARLRYVV  485 (718)
T ss_pred             HHHHHcCCEEEEeCCcccHHHHHHH----------HHhcCCeEEEchHHHHHHhhhhc----------CcccccceEEEE
Confidence            999999999998875 455555665          56689999999999998775531          123568999999


Q ss_pred             ecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCccceEEEecCC
Q 013869          310 CGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPS  389 (435)
Q Consensus       310 ~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~~Gel~v~~~~  389 (435)
                      +||+++++++.+.|++.+++++++.||+||++.+++.........+++|+|+||++++++|+++.   +..|||+++|++
T Consensus       486 ~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~~~i~d~~~~---~~~Gel~v~g~~  562 (718)
T PRK08043        486 AGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVPGI---EQGGRLQLKGPN  562 (718)
T ss_pred             EeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcccCCCCCCCcCCCCeeEEecCCCC---CCceEEEEecCC
Confidence            99999999999999999999999999999998665543333346789999999999999987653   234999999999


Q ss_pred             ccccccC--Cchh-------cccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          390 LFKEYWK--LPKV-------TKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       390 ~~~gy~~--~~~~-------~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++.||++  +++.       +.+.+..+|||+|||+|++|+||++++.||.||+|
T Consensus       563 v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I  617 (718)
T PRK08043        563 IMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFA  617 (718)
T ss_pred             ccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCee
Confidence            9999998  3442       22223357999999999999999999999999986

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-55  Score=435.64  Aligned_cols=384  Identities=23%  Similarity=0.345  Sum_probs=321.6

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      |+|.+.|.++++++|+++|+++.+.++||.||.++++++|.+|.+.                 + .+|++|+|+++|+++
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~-----------------~-~~~~~v~i~~~~~~~   62 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWLNEK-----------------E-SKNKTIAILLENRIE   62 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecCCcEeeHHHHHHHHHHHHHHHHHh-----------------C-CCCCEEEEEcCCCHH
Confidence            8899999999999999999999999999999999999999999984                 5 479999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchh
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (435)
                      +++++|||+++|++++|+++.++.+++.++++.++++.++++......+....    ..+..+.....     .......
T Consensus        63 ~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~-----~~~~~~~  133 (487)
T PRK07638         63 FLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEE----GRVIEIDEWKR-----MIEKYLP  133 (487)
T ss_pred             HHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhcc----ceEEEehhhhh-----hhhhccc
Confidence            99999999999999999999999999999999999999999986554332210    11111110000     0000001


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEE
Q 013869          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (435)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~  240 (435)
                      .........+++++++|||||||.||+|.++|+++..++......+++.++|+++...|++|..++. .++.++..|+++
T Consensus       134 ~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~-~~~~~l~~g~~~  212 (487)
T PRK07638        134 TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLY-GAISTLYVGQTV  212 (487)
T ss_pred             cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHH-HHHHHHccCcEE
Confidence            1111123356789999999999999999999999999988888888899999999999999988765 688999999999


Q ss_pred             EEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHH
Q 013869          241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM  320 (435)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~  320 (435)
                      ++.+.+++..++..          ++++++|++.++|+++..+.+...            ..++.+.++++|+.++.++.
T Consensus       213 ~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~------------~~~~~~~~~~~G~~l~~~~~  270 (487)
T PRK07638        213 HLMRKFIPNQVLDK----------LETENISVMYTVPTMLESLYKENR------------VIENKMKIISSGAKWEAEAK  270 (487)
T ss_pred             EEcCCCCHHHHHHH----------HHHcCCeEEEeCcHHHHHHHhCcC------------cCCceeEEEEcCCCCCHHHH
Confidence            99999999998888          666999999999999999987411            12445667889999999999


Q ss_pred             HHHHHHh-CCcccccccCccccchhccC-CCCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccccccCC
Q 013869          321 QQWETIT-GHRLLERYGMTEFVMAISNP-LRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKL  397 (435)
Q Consensus       321 ~~~~~~~-~~~l~~~YG~tE~~~~~~~~-~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~~  397 (435)
                      +++.+.+ +.++++.||+||++.++... ........++|+|+++++++|+|+++..++.+ .|||+++|+.++.||+++
T Consensus       271 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~Gel~v~~~~~~~gy~~~  350 (487)
T PRK07638        271 EKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGYIIG  350 (487)
T ss_pred             HHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCcccCCcEEEEECCCCCCCCCCCCeEEEEecccceeeecCC
Confidence            9999998 68899999999998765533 22345677999999999999999999887776 799999999999999999


Q ss_pred             chhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          398 PKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       398 ~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++.+.+.+ .+|||+|||+|++|+||++++.||++|+|
T Consensus       351 ~~~~~~~~-~~g~~~TGDl~~~d~~g~l~i~GR~~d~i  387 (487)
T PRK07638        351 GVLARELN-ADGWMTVRDVGYEDEEGFIYIVGREKNMI  387 (487)
T ss_pred             HHHHhhhc-cCCcEecCccEeEcCCCeEEEEecCCCeE
Confidence            88776654 58999999999999999999999999986

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2e-55  Score=443.16  Aligned_cols=396  Identities=23%  Similarity=0.339  Sum_probs=324.1

Q ss_pred             HHHHHHhcc-cCCCeeEEEeC----CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869            4 FKAAYKKGS-MARDSVAIRAD----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (435)
Q Consensus         4 ~~~~~~~~~-~~p~~~al~~~----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~   78 (435)
                      ++.+.+++. .+|+++|++..    .+++||+||.++++++|.+|.+                 .|+++||+|+++++|+
T Consensus        46 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-----------------~gv~~gd~V~i~~~n~  108 (570)
T PRK04319         46 YEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKE-----------------LGVEKGDRVFIFMPRI  108 (570)
T ss_pred             HHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCC
Confidence            467788876 57999999874    3689999999999999999998                 4999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC--ccccCCCCCCC-CCcccc
Q 013869           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNV-SSETTV  155 (435)
Q Consensus        79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~  155 (435)
                      +++++++|||+++|++++|+++.++.+++.++++.++++++++++.........  ..+.  .+..+...... ......
T Consensus       109 ~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  186 (570)
T PRK04319        109 PELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPAD--DLPSLKHVLLVGEDVEEGPGTLDF  186 (570)
T ss_pred             HHHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchh--cCCCceEEEEECCCcCCCcCccCH
Confidence            999999999999999999999999999999999999999999998765443211  1111  11111111000 000000


Q ss_pred             c----cchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHH
Q 013869          156 F----DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALL  231 (435)
Q Consensus       156 ~----~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~  231 (435)
                      .    ............++++++++|||||||.||+|.++|+++..++......+++.+++++++..|++|..+....++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~  266 (570)
T PRK04319        187 NALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIF  266 (570)
T ss_pred             HHHHhhcCCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHH
Confidence            0    000111122346789999999999999999999999999988888888888999999999999999998877899


Q ss_pred             HHHHcCCEEEEcC-CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEe
Q 013869          232 APLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC  310 (435)
Q Consensus       232 ~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~  310 (435)
                      .++..|+++++.+ .+++..+++.          ++++++|++.++|++++.+++.....      ....+++++|.+++
T Consensus       267 ~~l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~~~~lr~~~~  330 (570)
T PRK04319        267 APWLNGATNVIDGGRFSPERWYRI----------LEDYKVTVWYTAPTAIRMLMGAGDDL------VKKYDLSSLRHILS  330 (570)
T ss_pred             HHHhcCceEEEECCCCCHHHHHHH----------HHHcCCeEEEeCHHHHHHHHhcCCcc------cccCCcccceEEEE
Confidence            9999999999875 5788888888          66699999999999999998643211      12235789999999


Q ss_pred             cCCCCCHHHHHHHHHHhCCcccccccCccccchhc-cCCCCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEec-
Q 013869          311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS-  387 (435)
Q Consensus       311 ~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~-  387 (435)
                      ||+++++++.+.+.+.++.++++.||+||++.+++ ........++++|+|+|+++++|+|+++...+.+ .|||+++| 
T Consensus       331 gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~g~~Gel~i~~~  410 (570)
T PRK04319        331 VGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVDDQGNELPPNRMGNLAIKKG  410 (570)
T ss_pred             cccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEECCCCCCCCCCCceEEEEcCC
Confidence            99999999999999999999999999999986544 2222234567899999999999999988877666 79999997 


Q ss_pred             -CCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          388 -PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       388 -~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                       +.++.||+++++.+.+.|. +|||+|||+|++++||++++.||.+|+|
T Consensus       411 ~~~~~~GY~~~~~~~~~~~~-~gw~~TGDl~~~~~~g~l~~~GR~~d~i  458 (570)
T PRK04319        411 WPSMMRGIWNNPEKYESYFA-GDWYVSGDSAYMDEDGYFWFQGRVDDVI  458 (570)
T ss_pred             CChHHhHhcCCHHHhhhhhc-CCceEeCcEEEECCCeeEEEEecCCCEE
Confidence             8999999999999998886 7999999999999999999999999986

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=2.3e-55  Score=441.58  Aligned_cols=392  Identities=23%  Similarity=0.330  Sum_probs=308.2

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCc----------ccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCe
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQK----------SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGAR   70 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~----------~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~   70 (435)
                      +|+.+.|.+.++++|+++|++..+.          ++||+||.++++++|++|.+                 .|+++||+
T Consensus         6 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~-----------------~g~~~gd~   68 (552)
T PRK09274          6 ANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNA-----------------AGIGRGMR   68 (552)
T ss_pred             hhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCE
Confidence            4788999999999999999998554          89999999999999999999                 49999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEech--hhHHHHHHHHhccCCccccCCCC--
Q 013869           71 IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE--DYREVLQNVASKSGAKFSLIPPV--  146 (435)
Q Consensus        71 V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~--~~~~~~~~~~~~~~~~~~~~~~~--  146 (435)
                      |+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++++++  .....+.............+...  
T Consensus        69 V~~~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  148 (552)
T PRK09274         69 AVLMVTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGGRLL  148 (552)
T ss_pred             EEEEeCCcHHHHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheeccccccc
Confidence            99999999999999999999999999999999999999999999999999975  22222211110000001111000  


Q ss_pred             CCCCCccccc-c-chhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhh
Q 013869          147 PNVSSETTVF-D-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVH  224 (435)
Q Consensus       147 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  224 (435)
                      .......... . ...........++++++++|||||||.||+|.++|+++...+......+++.++++.+...|++|..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~  228 (552)
T PRK09274        149 WGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALF  228 (552)
T ss_pred             cCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhh
Confidence            0000000000 0 0001112344678999999999999999999999999999988888888999999999999987754


Q ss_pred             HHHHHHHHHHHcCCEEEEcC-------CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHH
Q 013869          225 GLFNALLAPLYAGATVEFMP-------KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA  297 (435)
Q Consensus       225 g~~~~~~~~l~~G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  297 (435)
                      +        +..|.++++.+       .+++..+++.          ++++++|++.++|+++..|++...        .
T Consensus       229 ~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~--------~  282 (552)
T PRK09274        229 G--------PALGMTSVIPDMDPTRPATVDPAKLFAA----------IERYGVTNLFGSPALLERLGRYGE--------A  282 (552)
T ss_pred             h--------hhhCCeEEecCcccccccccCHHHHHHH----------HHHcCCeEEeccHHHHHHHHHHhh--------h
Confidence            3        34578887764       3567777777          667999999999999999987532        2


Q ss_pred             hhhhccccEEEEecCCCCCHHHHHHHHHHh--CCcccccccCccccchhccCCC----------CCCCCCccceecCCCe
Q 013869          298 SASAAKQLRLMMCGSSALPLPVMQQWETIT--GHRLLERYGMTEFVMAISNPLR----------GARKAGTVGNPLPGVQ  365 (435)
Q Consensus       298 ~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~--~~~l~~~YG~tE~~~~~~~~~~----------~~~~~~~~G~p~~~~~  365 (435)
                      ...+++++|.+++||+++++++.+.|.+.|  ++++++.||+||++.+++....          ......++|+|+++++
T Consensus       283 ~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~  362 (552)
T PRK09274        283 NGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVE  362 (552)
T ss_pred             cCCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCce
Confidence            234678999999999999999999999999  4699999999999865442211          1122347899999999


Q ss_pred             EEEecC---------CCCCCCCc-cceEEEecCCccccccCCchhccccc--ccCC--ccccCceEEEcCCccEEEeccc
Q 013869          366 VKIAED---------ESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSF--TADG--FFKTGDTGKQDEDGYYIILGRK  431 (435)
Q Consensus       366 ~~i~d~---------~~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~--~~~g--~~~TGD~g~~~~dG~l~~~gR~  431 (435)
                      ++|+|+         +++.++.+ .|||+++|+.++.||+++++.+...|  +.+|  ||+|||+|++|+||+++++||.
T Consensus       363 ~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~  442 (552)
T PRK09274        363 VRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRK  442 (552)
T ss_pred             EEEEeccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEecc
Confidence            999984         33445555 79999999999999999999988776  3456  9999999999999999999999


Q ss_pred             ccCC
Q 013869          432 GIYF  435 (435)
Q Consensus       432 ~d~i  435 (435)
                      +|+|
T Consensus       443 ~d~i  446 (552)
T PRK09274        443 AHRV  446 (552)
T ss_pred             CCeE
Confidence            9986

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-54  Score=433.62  Aligned_cols=399  Identities=24%  Similarity=0.306  Sum_probs=319.7

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCC--cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQ--KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~--~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~   79 (435)
                      ++.+.|.++++++|+++|+++.+  +++||+||.++++++|++|.+                 .|+++||+|+|+++|++
T Consensus        17 ~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~-----------------~gv~~gd~V~i~~~n~~   79 (534)
T PRK05852         17 RIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTR-----------------SGLLPGDRVALRMGSNA   79 (534)
T ss_pred             cHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEECCCcH
Confidence            57889999999999999998743  579999999999999999999                 49999999999999999


Q ss_pred             HHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHh-ccCCccccCCCCCCC--CCc-ccc
Q 013869           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS-KSGAKFSLIPPVPNV--SSE-TTV  155 (435)
Q Consensus        80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~-~~~  155 (435)
                      +++++++||+++|++++|+++.++.+++.++++.++++++|++.+.......... ..+..+ .+......  ... ...
T Consensus        80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  158 (534)
T PRK05852         80 EFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTV-NVGGDSGPSGGTLSVHL  158 (534)
T ss_pred             HHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccceee-eeccccccccccccccc
Confidence            9999999999999999999999999999999999999999998753321111000 000000 00000000  000 000


Q ss_pred             ---ccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHH
Q 013869          156 ---FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLA  232 (435)
Q Consensus       156 ---~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~  232 (435)
                         ..............++.++++|||||||.||+|.++|+++...+......+++..+|++++..|++|..+++..++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~  238 (534)
T PRK05852        159 DAATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLA  238 (534)
T ss_pred             ccccCCCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHH
Confidence               00000001112234688999999999999999999999999999888888899999999999999999999888999


Q ss_pred             HHHcCCEEEEcC--CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEe
Q 013869          233 PLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC  310 (435)
Q Consensus       233 ~l~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~  310 (435)
                      ++..|+++++++  .+++..+++.          ++++++|+++++|.++..+.+.....      .....++++|.+.+
T Consensus       239 ~l~~g~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~~~~lr~i~~  302 (534)
T PRK05852        239 TLASGGAVLLPARGRFSAHTFWDD----------IKAVGATWYTAVPTIHQILLERAATE------PSGRKPAALRFIRS  302 (534)
T ss_pred             HHhcCCeEEeCCCcCcCHHHHHHH----------HHHcCCcEEEcChHHHHHHHhhcccc------cccccCCCeeEEEE
Confidence            999999999865  4677788887          66699999999999999998754321      11235688999999


Q ss_pred             cCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCC-----CCCCCCcccee--cCCCeEEEecCCCCCCCCc-cce
Q 013869          311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNP--LPGVQVKIAEDESGSDAAG-VGE  382 (435)
Q Consensus       311 ~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-----~~~~~~~~G~p--~~~~~~~i~d~~~~~~~~~-~Ge  382 (435)
                      +|+++++++++.|.+.++.++++.||+||++..++....     ......+.|.+  .+|++++++|++++.++.+ .||
T Consensus       303 ~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d~~g~~~~~g~~Ge  382 (534)
T PRK05852        303 CSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVGE  382 (534)
T ss_pred             CCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEECCCCCCCCCCCceE
Confidence            999999999999999999999999999999876553211     11112234444  6999999999999887766 799


Q ss_pred             EEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          383 ICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       383 l~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |+++|+.++.||+++++.+.+.|. +|||+|||+|++|+||++++.||.+|+|
T Consensus       383 l~v~g~~v~~gY~~~~~~t~~~~~-~g~~~TGD~~~~d~dG~l~~~gR~~d~i  434 (534)
T PRK05852        383 VWLRGTTVVRGYLGDPTITAANFT-DGWLRTGDLGSLSAAGDLSIRGRIKELI  434 (534)
T ss_pred             EEEecCcccchhcCCcccchhhhc-CCCcccCceEEEeCCCcEEEEecchhhE
Confidence            999999999999999999998884 7899999999999999999999999986

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-54  Score=433.26  Aligned_cols=398  Identities=26%  Similarity=0.351  Sum_probs=334.9

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      ++.++|.++++.+|+++|+++.++.+||+||.+++.++|..|.+.                 |+++|++|+++++|++++
T Consensus        12 ~l~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~-----------------gi~~~~~V~l~~~~~~~~   74 (523)
T PRK08316         12 TIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDL-----------------GLKKGDRVAALGHNSDAY   74 (523)
T ss_pred             CHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHHH
Confidence            578899999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCC----Ccccc--
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS----SETTV--  155 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--  155 (435)
                      +++++||+++|++++|+++..+.+++..+++.+++++++++.+....+....+........+.......    .....  
T Consensus        75 ~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (523)
T PRK08316         75 ALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDFAD  154 (523)
T ss_pred             HHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccccccccchhhHHH
Confidence            999999999999999999999999999999999999999999887776654433221111111100000    00000  


Q ss_pred             -ccc-hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHH
Q 013869          156 -FDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP  233 (435)
Q Consensus       156 -~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~  233 (435)
                       ... ...........+++++++|||||||.||+|.++|+++..+.......+++.++++++..+|++|..++...+..+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~  234 (523)
T PRK08316        155 WAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPY  234 (523)
T ss_pred             HHhcCCCccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHH
Confidence             000 011123355678999999999999999999999999999888888888999999999999999999987667778


Q ss_pred             HHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCC
Q 013869          234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS  313 (435)
Q Consensus       234 l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~  313 (435)
                      +..|+++++.+..++..++..          ++++++|++.++|.++..+++...        ....+++++|.+++||+
T Consensus       235 ~~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l~~~~~gg~  296 (523)
T PRK08316        235 LYVGATNVILDAPDPELILRT----------IEAERITSFFAPPTVWISLLRHPD--------FDTRDLSSLRKGYYGAS  296 (523)
T ss_pred             HhcCceEEEecCCCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHcCcc--------cccCCcccceEEEEcCC
Confidence            999999999988888888888          566999999999999999987532        12346789999999999


Q ss_pred             CCCHHHHHHHHHHh-CCcccccccCccccchhccCC--CCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCC
Q 013869          314 ALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPL--RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPS  389 (435)
Q Consensus       314 ~l~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~  389 (435)
                      .++.++.+.|++.+ +.++++.||+||++.++....  ......+++|+|+++++++|.|++++.++.+ .|||+++|+.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gei~v~~~~  376 (523)
T PRK08316        297 IMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVGEIVHRSPQ  376 (523)
T ss_pred             cCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCcccCCCCcEEEEEcCCCCCCCCCCcceEEEECCc
Confidence            99999999999988 789999999999987655322  2234567899999999999999888887766 7999999999


Q ss_pred             ccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          390 LFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       390 ~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++.||+++++.++..| .+|||+|||+|++++||.++++||.+|+|
T Consensus       377 ~~~~y~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~i~gR~~~~i  421 (523)
T PRK08316        377 LMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYITVVDRKKDMI  421 (523)
T ss_pred             hhhhhcCCHHHHHHHh-hCCCeeccceEEEcCCceEEEecccccEE
Confidence            9999999999998888 48999999999999999999999999975

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4.1e-56  Score=392.09  Aligned_cols=399  Identities=22%  Similarity=0.318  Sum_probs=338.5

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      ++.+.|.++|.++||++|+++.++.+||+||.+++.++|..|++                 +|+++||+|.+-+||..+|
T Consensus        29 ~l~d~L~~~A~~~pdriAv~d~~~~~sY~eLdqr~d~LAa~l~~-----------------lGi~~Gd~vlvQLpN~~ef   91 (542)
T COG1021          29 TLTDILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRR-----------------LGIKPGDTVLVQLPNVAEF   91 (542)
T ss_pred             cHHHHHHHHHhhcCCceEEecCcccccHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEECCchHHH
Confidence            57889999999999999999999999999999999999999999                 5999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEech-----hhHHHHHHHHhccCC-ccccCCCCCCCC--Ccc
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE-----DYREVLQNVASKSGA-KFSLIPPVPNVS--SET  153 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~  153 (435)
                      ++++||++++|+.+|.--|.....++.++.+.+.++.+|.+.     ++.+...+.....+. +...+....+..  ...
T Consensus        92 ~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~~~~~~  171 (542)
T COG1021          92 YITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEA  171 (542)
T ss_pred             HHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCcchhhh
Confidence            999999999999999888888999999999999999999986     444555544444433 222222111111  111


Q ss_pred             ccccchh-hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHH-HHH
Q 013869          154 TVFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALL  231 (435)
Q Consensus       154 ~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~  231 (435)
                      ....... ..+..+.+.++++++..+.||||.||.|..||..+..+++...+..++++.++.++.+|..|-+.+.. +++
T Consensus       172 ~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~L  251 (542)
T COG1021         172 ALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGAL  251 (542)
T ss_pred             hhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchh
Confidence            1111111 12234667889999999999999999999999999999999999999999999999999988775433 688


Q ss_pred             HHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEec
Q 013869          232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (435)
Q Consensus       232 ~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~  311 (435)
                      +.+.+|+++|+.+..++...+.+          |+++++|+...+|.+...+++..+.        ...+++|||.+-.|
T Consensus       252 Gv~~agG~VVla~~psp~~~F~l----------Ierh~Vt~tALVPpla~LWlqa~e~--------~~~~LsSLrllQVG  313 (542)
T COG1021         252 GVFLAGGTVVLAPDPSPELCFPL----------IERHGVTVTALVPPLASLWLQAAEW--------ERADLSSLRLLQVG  313 (542)
T ss_pred             heeeeccEEEECCCCCHHHHHHH----------HHHhccceEEeccHHHHHHHHhhhc--------ccCCchheeEEeec
Confidence            99999999999999999999999          7889999999999999999997543        45589999999999


Q ss_pred             CCCCCHHHHHHHHHHhCCcccccccCccccchhccCCC-CCCCCCccceec-CCCeEEEecCCCCCCCCc-cceEEEecC
Q 013869          312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKSP  388 (435)
Q Consensus       312 G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~~~~~~G~p~-~~~~~~i~d~~~~~~~~~-~Gel~v~~~  388 (435)
                      |+.+++.+.+++...+++.+-+.+|+.|.-.-.+.-.+ ...-..+-|+|+ |.-+++|+|.+|+++.+| +|+|.++||
T Consensus       314 Garl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE~G~LltRGP  393 (542)
T COG1021         314 GARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEVGELLTRGP  393 (542)
T ss_pred             CcccCHHHHhhchhhhCchHHHHhhhhhhhhcccccCCchHheeecCCCcCCCcceeEEecCCCCCCCCCCcceeeecCC
Confidence            99999999999999999999999999997554442211 122234568887 788999999999997665 899999999


Q ss_pred             CccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          389 SLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       389 ~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      .-++||++.|+.+.++|+.+|||+|||++++|+||+|.+.||.||+|
T Consensus       394 YTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQI  440 (542)
T COG1021         394 YTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQI  440 (542)
T ss_pred             eeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhhh
Confidence            99999999999999999999999999999999999999999999987

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.3e-54  Score=429.51  Aligned_cols=382  Identities=27%  Similarity=0.403  Sum_probs=324.3

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      |++.+.|.+++..+||++|+++.++.+||+||+++++++|++|.+.                 |+++||+|+++++|+++
T Consensus         2 ~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~-----------------g~~~~~~v~i~~~~~~~   64 (483)
T PRK03640          2 ETMPNWLKQRAFLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAAL-----------------GVKKGDRVALLMKNGME   64 (483)
T ss_pred             CcHHHHHHHHHHhCCCceEEEeCCeeeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence            7899999999999999999999999999999999999999999994                 89999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchh
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (435)
                      ++++++||+++|++++|+++..+.+++..++++++++.++++.+...........   .   +   ......    ....
T Consensus        65 ~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~---~---~---~~~~~~----~~~~  131 (483)
T PRK03640         65 MILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGISV---K---F---AELMNG----PKEE  131 (483)
T ss_pred             HHHHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhccc---c---H---HHHhhc----cccc
Confidence            9999999999999999999999999999999999999999998766544332110   0   0   000000    0000


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEE
Q 013869          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (435)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~  240 (435)
                      .........+++++++|||||||.||+|.++|.++..++......+++.++++++..+|++|..++. .++.++..|+++
T Consensus       132 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~~  210 (483)
T PRK03640        132 AEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLS-ILMRSVIYGMRV  210 (483)
T ss_pred             CCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHH-HHHHHHhcCCEE
Confidence            1112234678999999999999999999999999988887777778899999999999999999986 488999999999


Q ss_pred             EEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHH
Q 013869          241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM  320 (435)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~  320 (435)
                      ++.+.+++..+++.          +.++++|++.++|+++..+++.....         ...+++|.++.||++++..+.
T Consensus       211 ~~~~~~~~~~~~~~----------i~~~~~t~l~~~P~~~~~l~~~~~~~---------~~~~~lr~~~~~g~~~~~~~~  271 (483)
T PRK03640        211 VLVEKFDAEKINKL----------LQTGGVTIISVVSTMLQRLLERLGEG---------TYPSSFRCMLLGGGPAPKPLL  271 (483)
T ss_pred             EecCCCCHHHHHHH----------HHHhCCcEEEeHHHHHHHHHhCcCcc---------ccCCcceEEEEcCCCCCHHHH
Confidence            99999999888888          56699999999999999998653321         234689999999999999999


Q ss_pred             HHHHHHhCCcccccccCccccchhc--cCCCCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccccccCC
Q 013869          321 QQWETITGHRLLERYGMTEFVMAIS--NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKL  397 (435)
Q Consensus       321 ~~~~~~~~~~l~~~YG~tE~~~~~~--~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~~  397 (435)
                      +.+++. ++++++.||+||++..++  .........+++|+|++++++++.+++ ..++.+ .|||+++|+.++.||+++
T Consensus       272 ~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~~-~~~~~g~~Gel~v~g~~~~~gy~~~  349 (483)
T PRK03640        272 EQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDG-VVVPPFEEGEIVVKGPNVTKGYLNR  349 (483)
T ss_pred             HHHHHh-CCCeeeeeccCcccccccccCcccccccCCCcccccCCcEEEEecCC-CcCCCCCceEEEEECcchhhhhcCC
Confidence            988875 999999999999875433  222234567899999999999999865 555555 799999999999999999


Q ss_pred             chhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          398 PKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       398 ~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++.+...| .+|||+|||+|++++||++++.||++|+|
T Consensus       350 ~~~~~~~~-~~~~~~tGDl~~~~~~g~l~~~GR~~~~i  386 (483)
T PRK03640        350 EDATRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLI  386 (483)
T ss_pred             HHHHHHHH-hcCCeeccceEEEcCCCCEEEeecccCeE
Confidence            99998888 47999999999999999999999999875

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=2e-54  Score=434.23  Aligned_cols=398  Identities=24%  Similarity=0.385  Sum_probs=327.7

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCC-cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQ-KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~-~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      ++.+.|.++++.+||++|++++. +.+||+||+++++++|++|++.                 |+++||+|+++++|+++
T Consensus        24 ~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~~-----------------G~~~gd~V~i~~~n~~~   86 (547)
T PRK06087         24 SLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAK-----------------GIEPGDRVAFQLPGWCE   86 (547)
T ss_pred             CHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence            57889999999999999999865 7999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhh-----HHHHHHHHhccCC--ccccCCCCCCCCCcc
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSGA--KFSLIPPVPNVSSET  153 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  153 (435)
                      ++++++||+++|++++|+++..+.+++.++++.+++++++++...     .+.+.........  .+..+..........
T Consensus        87 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (547)
T PRK06087         87 FTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSL  166 (547)
T ss_pred             HHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCcc
Confidence            999999999999999999999999999999999999999997632     2333333222211  111111100000000


Q ss_pred             c---c-ccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHH
Q 013869          154 T---V-FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA  229 (435)
Q Consensus       154 ~---~-~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~  229 (435)
                      .   . ..............+++++++|||||||.||+|.++|.++..+........++.+.+++++..|++|.++++..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~  246 (547)
T PRK06087        167 SLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHG  246 (547)
T ss_pred             CHHHHhccCCcccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHH
Confidence            0   0 00000011223567899999999999999999999999999888888888889999999999999999998888


Q ss_pred             HHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEE
Q 013869          230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM  309 (435)
Q Consensus       230 ~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~  309 (435)
                      ++.++..|+++++.+.+++..+++.          +.++++|++.++|..+..+++...        .....++++|.++
T Consensus       247 ~~~~l~~g~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~~~~~~~~l~~~~--------~~~~~~~~lr~i~  308 (547)
T PRK06087        247 VTAPFLIGARSVLLDIFTPDACLAL----------LEQQRCTCMLGATPFIYDLLNLLE--------KQPADLSALRFFL  308 (547)
T ss_pred             HHHHHhcCCEEEecCCCCHHHHHHH----------HHHcCCCEEeccHHHHHHHHhccc--------cCCCCCCCeEEEE
Confidence            9999999999999999999988888          566899999998888877776532        1233578999999


Q ss_pred             ecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCC--CCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEe
Q 013869          310 CGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG--ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVK  386 (435)
Q Consensus       310 ~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~  386 (435)
                      +||+++++++.+.+.+. ++++++.||+||++.+.......  .....++|.|+++++++++|+++..++.+ .|||+++
T Consensus       309 ~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~  387 (547)
T PRK06087        309 CGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCEGEEASR  387 (547)
T ss_pred             EcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCcCCCcceEEEe
Confidence            99999999999988875 99999999999998765533322  12345789999999999999988887766 7999999


Q ss_pred             cCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          387 SPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       387 ~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |+.++.||+++++.+...++.+|||+|||+|+++++|+++++||.+|+|
T Consensus       388 g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i  436 (547)
T PRK06087        388 GPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDII  436 (547)
T ss_pred             cccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhh
Confidence            9999999999999999888888999999999999999999999999976

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-54  Score=430.73  Aligned_cols=393  Identities=21%  Similarity=0.342  Sum_probs=328.3

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      |++.++|.++++++|+++|++..++++||.||.++++++|.+|.+.                 |+++|++|+++++|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~el~~~v~~~a~~L~~~-----------------g~~~~~~v~i~~~~~~~   64 (497)
T PRK06145          2 FNLSASIAFHARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHAR-----------------GIGQGDVVALLMKNSAA   64 (497)
T ss_pred             ccHHHHHHHHHHHCCCceEEEECCcceeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence            6899999999999999999999999999999999999999999994                 89999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccc-cch
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVF-DQS  159 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  159 (435)
                      ++++++||+++|++++|+++..+.+++.++++.++++.++++.+........     .....+.... ........ ...
T Consensus        65 ~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~  138 (497)
T PRK06145         65 FLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVALE-----TPKIVIDAAA-QADSRRLAQGGL  138 (497)
T ss_pred             HHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhcc-----cceEEecCcc-cchhHHHhccCC
Confidence            9999999999999999999999999999999999999999998765432210     0111111000 00000000 000


Q ss_pred             hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCE
Q 013869          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (435)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~  239 (435)
                      .........++++++++|||||||.||+|.++|+++..........+++..+++++...|++|..++....+.++..|++
T Consensus       139 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~  218 (497)
T PRK06145        139 EIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGT  218 (497)
T ss_pred             CCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCE
Confidence            11112245678999999999999999999999999987776666777889999999999999999887667888999999


Q ss_pred             EEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHH
Q 013869          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (435)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l  319 (435)
                      +++.+.+++..+++.          ++++++|.+.++|+++..+++....        ....++++|.+++||++++.++
T Consensus       219 ~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~ll~~~~~--------~~~~~~~l~~~~~gG~~~~~~~  280 (497)
T PRK06145        219 LRIHREFDPEAVLAA----------IERHRLTCAWMAPVMLSRVLTVPDR--------DRFDLDSLAWCIGGGEKTPESR  280 (497)
T ss_pred             EEECCcCCHHHHHHH----------HHHhCCeEEEehHHHHHHHHcCCCc--------cccccccceEEEecCCCCCHHH
Confidence            999999999998888          5668999999999999999875321        2235678999999999999999


Q ss_pred             HHHHHHHh-CCcccccccCccccchhccCCC--CCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCcccccc
Q 013869          320 MQQWETIT-GHRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYW  395 (435)
Q Consensus       320 ~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~  395 (435)
                      ++.|.+.| +.++++.||+||++..++....  .....+++|+|++++++++.|+++...+.+ .|||+++|+.++.||+
T Consensus       281 ~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~Gy~  360 (497)
T PRK06145        281 IRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYW  360 (497)
T ss_pred             HHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcccCCCCceEEEECCCCCCCCCCCceEEEEECcchhhhhc
Confidence            99999998 6789999999999865442211  223567899999999999999988887666 7999999999999999


Q ss_pred             CCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          396 KLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       396 ~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++++.+...|. ++||+|||+|++++||+++++||.+|+|
T Consensus       361 ~~~~~~~~~~~-~~~~~TGDl~~~~~~g~l~~~GR~~~~i  399 (497)
T PRK06145        361 KDPEKTAEAFY-GDWFRSGDVGYLDEEGFLYLTDRKKDMI  399 (497)
T ss_pred             CChHHHHHHHh-CCCeeccceEEEcCCCcEEEeccccceE
Confidence            99999998884 7999999999999999999999999986

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=3.3e-54  Score=431.74  Aligned_cols=396  Identities=25%  Similarity=0.351  Sum_probs=324.8

Q ss_pred             hHHHHHHHhcccCCCeeEEEe------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEe
Q 013869            2 EVFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~   75 (435)
                      ++.+.|.++++.+|+++|++.      .++.+||+||+++++++|.+|.+                 .|+++|++|++++
T Consensus        23 ~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~-----------------~g~~~g~~V~i~~   85 (538)
T TIGR03208        23 TINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLAR-----------------LGVGRGDVVSFQL   85 (538)
T ss_pred             cHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEC
Confidence            678899999999999999986      24689999999999999999999                 4999999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhH-----HHHHHHHhccCC--ccccCCCCCC
Q 013869           76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSGA--KFSLIPPVPN  148 (435)
Q Consensus        76 ~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~  148 (435)
                      +|+++++++++||+++|++++|+++..+.+++.++++.++++++++++.+.     ..........+.  .+..... ..
T Consensus        86 ~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  164 (538)
T TIGR03208        86 PNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDG-DG  164 (538)
T ss_pred             CCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecC-CC
Confidence            999999999999999999999999999999999999999999999987642     112222111111  1111110 00


Q ss_pred             CCCcccc---c--cchhh----hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeec
Q 013869          149 VSSETTV---F--DQSQA----EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLP  219 (435)
Q Consensus       149 ~~~~~~~---~--~~~~~----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p  219 (435)
                      .......   .  .....    .......++++++++|||||||.||+|.++|+++...+......+++..++++++.+|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p  244 (538)
T TIGR03208       165 DDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASP  244 (538)
T ss_pred             CcCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCC
Confidence            0000000   0  00000    0112356799999999999999999999999999999888888888999999999999


Q ss_pred             chhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhh
Q 013869          220 LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA  299 (435)
Q Consensus       220 l~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  299 (435)
                      ++|..++...++.++..|+++++.+.+++..+++.          ++++++|++.++|.++..+.+..+.        ..
T Consensus       245 l~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~----------l~~~~vt~~~~~p~~~~~l~~~~~~--------~~  306 (538)
T TIGR03208       245 MAHQTGFMYGLMMPLILNATAVLQDIWNPARAAEL----------IRETGVTFTMASTPFLTDLCRAVKE--------SG  306 (538)
T ss_pred             chhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHH----------HHHhCCeEEecCHHHHHHHHhchhc--------cC
Confidence            99999887789999999999999998999998888          5668999999999999998765321        22


Q ss_pred             hhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCC--CCCCCccceecCCCeEEEecCCCCCCC
Q 013869          300 SAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG--ARKAGTVGNPLPGVQVKIAEDESGSDA  377 (435)
Q Consensus       300 ~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d~~~~~~~  377 (435)
                      ..++++|.+++||+++++++.++|.+.+++++++.||+||++.+.+.....  .....++|+|+++++++|+|+++...+
T Consensus       307 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~~~~  386 (538)
T TIGR03208       307 APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANGAKLS  386 (538)
T ss_pred             CCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEECCCCCCCc
Confidence            357889999999999999999999998999999999999998765533221  122457899999999999999888776


Q ss_pred             Cc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          378 AG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       378 ~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      .+ .|||+++|+.++.||+++++.+.  .+.+|||+|||+|++|+||+++++||.+|+|
T Consensus       387 ~g~~Gel~v~g~~~~~gy~~~~~~~~--~~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i  443 (538)
T TIGR03208       387 QGETGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTGDLAFQDAEGYIRINGRSKDVI  443 (538)
T ss_pred             CCCCcEEEEecCcccccccCCccccc--ccCCCceeccceEEECCCCcEEEEeccCceE
Confidence            66 79999999999999999998765  3468999999999999999999999999975

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=3.2e-54  Score=431.38  Aligned_cols=395  Identities=22%  Similarity=0.349  Sum_probs=327.9

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +++.+.|.++++.+|+++|++..++.+||+||++++.++|..|.+                 .|+++|++|+++++|+++
T Consensus        21 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~-----------------~gi~~g~~V~v~~~n~~~   83 (542)
T PRK06155         21 RTLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAA-----------------AGVKRGDRVALMCGNRIE   83 (542)
T ss_pred             cCHHHHHHHHHHHCCCCeEEEeCCccccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCChH
Confidence            367899999999999999999999999999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccC--CccccCCCCCCC--C-Cc--c
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AKFSLIPPVPNV--S-SE--T  153 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~-~~--~  153 (435)
                      ++++++||+++|++++|+++.++.+++..+++++++++++++.+....+........  ..+..+......  . ..  .
T Consensus        84 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (542)
T PRK06155         84 FLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTA  163 (542)
T ss_pred             HHHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccccccccchh
Confidence            999999999999999999999999999999999999999999988776655433221  111111111000  0 00  0


Q ss_pred             ccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHH
Q 013869          154 TVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP  233 (435)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~  233 (435)
                      ...............++++++++|||||||.||+|.++|+++..........+++.+.+++++..|++|..++. .++.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~-~~~~~  242 (542)
T PRK06155        164 PLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALN-AFFQA  242 (542)
T ss_pred             hhcccCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHH-HHHHH
Confidence            00000000112234678999999999999999999999999988887778888999999999999999999986 58999


Q ss_pred             HHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCC
Q 013869          234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS  313 (435)
Q Consensus       234 l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~  313 (435)
                      +..|+++++.+.+++..++..          ++++++|++.++|+++..+++.....        ....+++|.++.+| 
T Consensus       243 l~~G~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~p~~~~~l~~~~~~~--------~~~~~~l~~~~~g~-  303 (542)
T PRK06155        243 LLAGATYVLEPRFSASGFWPA----------VRRHGATVTYLLGAMVSILLSQPARE--------SDRAHRVRVALGPG-  303 (542)
T ss_pred             HHcCceEEeeCCCCHHHHHHH----------HHHhCCcEEEchHHHHHHHHcCcCcc--------ccccCceEEEEEcC-
Confidence            999999999999999999888          55689999999999999988754321        22456788777555 


Q ss_pred             CCCHHHHHHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecC---C
Q 013869          314 ALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSP---S  389 (435)
Q Consensus       314 ~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~---~  389 (435)
                       +++.+.+.|++.+++++++.||+||++.++.... .....+++|.|.++++++|+|++++.++.+ .|||+++|+   .
T Consensus       304 -~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gei~v~~~~~~~  381 (542)
T PRK06155        304 -VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTH-GSQRPGSMGRLAPGFEARVVDEHDQELPDGEPGELLLRADEPFA  381 (542)
T ss_pred             -CCHHHHHHHHHHcCCCEEeeecccccCccccCCC-CCCCCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecCCccc
Confidence             5789999999999999999999999987665432 234667899999999999999988887776 799999998   6


Q ss_pred             ccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          390 LFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       390 ~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++.||+++++.+.+.| .++||+|||+|++++||++++.||.+|+|
T Consensus       382 ~~~GY~~~~~~~~~~~-~~~~~~TGD~~~~~~dG~l~i~GR~~d~i  426 (542)
T PRK06155        382 FATGYFGMPEKTVEAW-RNLWFHTGDRVVRDADGWFRFVDRIKDAI  426 (542)
T ss_pred             cchhhcCCHHHHHHhh-cCCcEeccceEEEcCCceEEEEecCCCEE
Confidence            9999999999988887 48999999999999999999999999985

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.7e-54  Score=434.54  Aligned_cols=399  Identities=25%  Similarity=0.388  Sum_probs=325.8

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +++.+.|.++++++|+++|++..++.+||.||+++++++|+.|.+                 .|+++||+|+++++|+++
T Consensus        32 ~~l~~~~~~~~~~~p~~~a~~~~~~~~Ty~ql~~~~~~~A~~L~~-----------------~gi~~gd~V~l~~~n~~~   94 (573)
T PRK05605         32 TTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRA-----------------LGVRPGDRVAIVLPNCPQ   94 (573)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCCHH
Confidence            468899999999999999999999999999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCc-cccCCCCC------------
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FSLIPPVP------------  147 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~------------  147 (435)
                      ++++++||+++|++++|+++.++.+++.+++++++++++|+++.....+.......... +..+....            
T Consensus        95 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  174 (573)
T PRK05605         95 HIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRL  174 (573)
T ss_pred             HHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeeccccccccccccccc
Confidence            99999999999999999999999999999999999999999887766555443221111 10000000            


Q ss_pred             ---CCC-----------Ccccccc---c-hh----hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHh
Q 013869          148 ---NVS-----------SETTVFD---Q-SQ----AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA  205 (435)
Q Consensus       148 ---~~~-----------~~~~~~~---~-~~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~  205 (435)
                         ...           .......   . ..    .........+++++++|||||||.||+|.++|+++..++......
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~  254 (573)
T PRK05605        175 PIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAW  254 (573)
T ss_pred             ccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhh
Confidence               000           0000000   0 00    011223457899999999999999999999999998877654443


Q ss_pred             cc-C-CCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHH
Q 013869          206 WE-Y-TSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL  283 (435)
Q Consensus       206 ~~-~-~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l  283 (435)
                      .. + ...+++++.+|++|..|+...+..++..|+++++.+.+++..+++.          ++++++|.+.++|.+++.+
T Consensus       255 ~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~l  324 (573)
T PRK05605        255 VPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDA----------MKKHPPTWLPGVPPLYEKI  324 (573)
T ss_pred             ccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHH----------HHHhCCEEEEchHHHHHHH
Confidence            32 2 3468999999999999987778888999999999999899888888          5668999999999999999


Q ss_pred             HhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccC-CCCCCCCCccceecC
Q 013869          284 IQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP-LRGARKAGTVGNPLP  362 (435)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~-~~~~~~~~~~G~p~~  362 (435)
                      ++..+.        ....++++|.+++||+++++++.+.|.+.++.++++.||+||++++++.. .......+++|+|++
T Consensus       325 ~~~~~~--------~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~  396 (573)
T PRK05605        325 AEAAEE--------RGVDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFP  396 (573)
T ss_pred             HhCccc--------cCCCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhcCCcccCCcCCccccCCC
Confidence            876432        22356789999999999999999999998899999999999998765533 222345678999999


Q ss_pred             CCeEEEecCCC--CCCCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          363 GVQVKIAEDES--GSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       363 ~~~~~i~d~~~--~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +++++|+|+++  ..++.+ .|||+++|+.++.||+++++.+...|. +|||+|||+|+++++|++++.||.+|+|
T Consensus       397 ~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~i~gR~dd~i  471 (573)
T PRK05605        397 DTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFL-DGWFRTGDVVVMEEDGFIRIVDRIKELI  471 (573)
T ss_pred             CCEEEEEcCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhccc-CCCcccCCEEEEcCCCcEEEEeccccce
Confidence            99999999764  555555 799999999999999999999998885 5799999999999999999999999985

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.5e-54  Score=430.54  Aligned_cols=398  Identities=26%  Similarity=0.410  Sum_probs=337.0

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +++.++|.++++.+|+++|+.+.++.+||+||+++++++|+.|.+.                 |+++|++|+++++|+++
T Consensus         6 ~~l~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~-----------------g~~~~~~V~l~~~~~~~   68 (521)
T PRK06187          6 LTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRAL-----------------GVKKGDRVAVFDWNSHE   68 (521)
T ss_pred             CCHHHHHHHHHHHCCCceEEEeCCceEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence            4789999999999999999999999999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC--ccccCCCCCC------CCCc
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPN------VSSE  152 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~  152 (435)
                      ++++++||+++|++++|+++.++.+++..+++.+++++++++.+..+.+.......+.  .+..+.....      ....
T Consensus        69 ~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (521)
T PRK06187         69 YLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEY  148 (521)
T ss_pred             HHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccccccccccH
Confidence            9999999999999999999999999999999999999999999888877766554432  1111111110      0000


Q ss_pred             ccc-ccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHH
Q 013869          153 TTV-FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALL  231 (435)
Q Consensus       153 ~~~-~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~  231 (435)
                      ... ..............+++++++|||||||.||++.++|+++.+........+++..+++++..+|++|..++.. .+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~  227 (521)
T PRK06187        149 EELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGL-PY  227 (521)
T ss_pred             HHHhhcCCccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHH-HH
Confidence            000 0001111133456789999999999999999999999999988888888889999999999999999998875 55


Q ss_pred             HHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEec
Q 013869          232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (435)
Q Consensus       232 ~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~  311 (435)
                      .++..|+++++++.+++..++..          ++++++|.++++|+++..+++..+.        ....++++|.+++|
T Consensus       228 ~~l~~G~~~v~~~~~~~~~~~~~----------l~~~~~t~l~~~p~~~~~l~~~~~~--------~~~~~~~l~~v~~~  289 (521)
T PRK06187        228 LALMAGAKQVIPRRFDPENLLDL----------IETERVTFFFAVPTIWQMLLKAPRA--------YFVDFSSLRLVIYG  289 (521)
T ss_pred             HHHHhCCEEEecCCCCHHHHHHH----------HHHhCCeEEEchHHHHHHHHcCcCC--------CccCcchhhEEEEc
Confidence            59999999999999888888887          5669999999999999999887543        23457889999999


Q ss_pred             CCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCCC------CCCCccceecCCCeEEEecCCCCCCCC--c-cce
Q 013869          312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGA------RKAGTVGNPLPGVQVKIAEDESGSDAA--G-VGE  382 (435)
Q Consensus       312 G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~------~~~~~~G~p~~~~~~~i~d~~~~~~~~--~-~Ge  382 (435)
                      |++++.++++.|.+.+++++++.||+||++.++.......      ....++|+|+++++++|+|+++..++.  + .||
T Consensus       290 Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~~Ge  369 (521)
T PRK06187        290 GAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGE  369 (521)
T ss_pred             CcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECCCCCCCCCCCCCeeE
Confidence            9999999999999999999999999999987655433222      267789999999999999998887665  5 799


Q ss_pred             EEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          383 ICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       383 l~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |+++|+.++.||+++++.+...|. ++||+|||+|+++++|.+++.||.+|+|
T Consensus       370 l~v~~~~~~~~y~~~~~~~~~~~~-~~~~~tGD~~~~~~~g~~~~~GR~~~~i  421 (521)
T PRK06187        370 IIVRGPWLMQGYWNRPEATAETID-GGWLHTGDVGYIDEDGYLYITDRIKDVI  421 (521)
T ss_pred             EEEECcchhhhhcCCHHHHHHHhh-CCceeccceEEEcCCCCEEEeecccceE
Confidence            999999999999999998888885 6799999999999999999999999874

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-54  Score=433.54  Aligned_cols=395  Identities=23%  Similarity=0.334  Sum_probs=309.2

Q ss_pred             hHHHHHHHhcccCCCeeEEEe--CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCH
Q 013869            2 EVFKAAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~   79 (435)
                      ++.+.|.++|+++|+++|++.  .++.+||+||.++++++|+.|.+.                 |+++|++|+++++|++
T Consensus        15 ~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~-----------------g~~~g~~V~i~~~~~~   77 (540)
T PRK05857         15 TVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQ-----------------SVSRGSRVLVISDNGP   77 (540)
T ss_pred             chHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHh-----------------CcCCCCEEEEEcCCCH
Confidence            578899999999999999985  346899999999999999999994                 9999999999999999


Q ss_pred             HHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccC-CccccCCCCCCCCCccccccc
Q 013869           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-AKFSLIPPVPNVSSETTVFDQ  158 (435)
Q Consensus        80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  158 (435)
                      ++++++|||+++|++++|+++.++.+++.++++.++++++++++.............. .....+...............
T Consensus        78 e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (540)
T PRK05857         78 ETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDA  157 (540)
T ss_pred             HHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccceeEeecccccccccccccc
Confidence            9999999999999999999999999999999999999999999875432211111000 001111000000000000000


Q ss_pred             hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHH----hccCCCCCeeEEeecchhhhHHHHHHHHHH
Q 013869          159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVHGLFNALLAPL  234 (435)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l  234 (435)
                      ...........+++++++|||||||.||+|.++|+++.++......    ......+++++..+|++|..+++ ..+.++
T Consensus       158 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~-~~~~~l  236 (540)
T PRK05857        158 ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLW-WILTCL  236 (540)
T ss_pred             cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHH-HHHHHh
Confidence            0011123456789999999999999999999999999876544322    23455678999999999999987 478889


Q ss_pred             HcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCC
Q 013869          235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSA  314 (435)
Q Consensus       235 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~  314 (435)
                      ..|+++++ .+.++..+++.          +++|++|++.++|+++..+++..+.        ...+++++|.+++||++
T Consensus       237 ~~G~~~v~-~~~~~~~~~~~----------i~~~~it~~~~~P~~~~~l~~~~~~--------~~~~~~~lr~~~~gG~~  297 (540)
T PRK05857        237 MHGGLCVT-GGENTTSLLEI----------LTTNAVATTCLVPTLLSKLVSELKS--------ANATVPSLRLVGYGGSR  297 (540)
T ss_pred             hcceeEEe-cCCChhHHHHH----------HHhcCcceEEeChHHHHHHHhcccc--------CCCcCccceEEEEcCcc
Confidence            99999876 44577777777          6779999999999999999875332        22357899999999999


Q ss_pred             CCHHHHHHHHHHhCCcccccccCccccchhccCCCC-----CCCCCccceecCCCeEEEecCCCCCC------C-Cccce
Q 013869          315 LPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-----ARKAGTVGNPLPGVQVKIAEDESGSD------A-AGVGE  382 (435)
Q Consensus       315 l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~-----~~~~~~~G~p~~~~~~~i~d~~~~~~------~-~~~Ge  382 (435)
                      ++....+ |.+.+++++++.||+||++..+......     ..+.+++|+|++|++++|+|+++...      + +..||
T Consensus       298 ~~~~~~~-~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Ge  376 (540)
T PRK05857        298 AIAADVR-FIEATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGT  376 (540)
T ss_pred             CCchhHH-HHHHhCCeeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcce
Confidence            9888774 6667799999999999997543321111     12457899999999999999877631      2 23699


Q ss_pred             EEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          383 ICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       383 l~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |+++|+.++.||+++++.+.+.|. +|||+|||+|++|+||++++.||.+|+|
T Consensus       377 l~v~g~~~~~GY~~~~~~t~~~~~-~g~~~TGDlg~~d~~g~l~~~GR~~~~i  428 (540)
T PRK05857        377 LWIKSPANMLGYWNNPERTAEVLI-DGWVNTGDLLERREDGFFYIKGRSSEMI  428 (540)
T ss_pred             EEEeCcchhhhhhCCccchhhhcC-CCceeccceEEEcCCceEEEeccccccE
Confidence            999999999999999999988884 7999999999999999999999999986

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=7.9e-54  Score=427.29  Aligned_cols=397  Identities=24%  Similarity=0.392  Sum_probs=328.8

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      ++.+.|.+.++++|+++|+.+.++++||+||.+++.++|++|.+.                 |+++|++|+++++|++++
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~v~~~a~~l~~~-----------------g~~~~~~V~i~~~n~~~~   63 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGL-----------------GLARGERVAIYLDKRLET   63 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCCHHH
Confidence            467899999999999999999999999999999999999999984                 999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC--ccccCCCCCCCC-------Cc
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVS-------SE  152 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------~~  152 (435)
                      +++++||+.+|++++|+++..+.+++..+++.+++++++++.+..+.+.........  .+..+.......       ..
T Consensus        64 ~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (515)
T TIGR03098        64 VTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSW  143 (515)
T ss_pred             HHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccCCccccccH
Confidence            999999999999999999999999999999999999999998776655444333211  111111110000       00


Q ss_pred             cccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHH
Q 013869          153 TTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLA  232 (435)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~  232 (435)
                      .................+++++++|||||||.||+|.+||+++..++......+++..+++++..+|++|..++. .++.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~  222 (515)
T TIGR03098       144 PKLLALGDADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFN-QLTT  222 (515)
T ss_pred             HHhhccccccccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHH-HHHH
Confidence            000000011112234567899999999999999999999999999998888888899999999999999999986 5899


Q ss_pred             HHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecC
Q 013869          233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (435)
Q Consensus       233 ~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G  312 (435)
                      ++..|+++++.+.+++..+++.          ++++++|++.++|+++..+.+...         ....++++|.++++|
T Consensus       223 ~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~---------~~~~~~~l~~~~~~g  283 (515)
T TIGR03098       223 AFYVGATVVLHDYLLPRDVLKA----------LEKHGITGLAAVPPLWAQLAQLDW---------PESAAPSLRYLTNSG  283 (515)
T ss_pred             HHHcCCEEEEcCCCCHHHHHHH----------HHHcCCceEecChHHHHHHHhccc---------CCCCccceEEEEecC
Confidence            9999999999999999998888          566899999999999999876311         113567899999999


Q ss_pred             CCCCHHHHHHHHHHh-CCcccccccCccccchhccCC-CCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCC
Q 013869          313 SALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPS  389 (435)
Q Consensus       313 ~~l~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~-~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~  389 (435)
                      +++++++.+.+++.+ +..+++.||+||++....... ....+++++|+|+++++++|+|+++..++.+ .|||+++|+.
T Consensus       284 ~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~  363 (515)
T TIGR03098       284 GAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLREDGSECAPGEEGELVHRGAL  363 (515)
T ss_pred             CcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcceecCCCEEEEECCCCCCCCCCCceEEEEcCch
Confidence            999999999999988 678999999999875444322 2235678999999999999999888877655 7999999999


Q ss_pred             ccccccCCchhccccccc-----------CCccccCceEEEcCCccEEEecccccCC
Q 013869          390 LFKEYWKLPKVTKDSFTA-----------DGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       390 ~~~gy~~~~~~~~~~~~~-----------~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++.||+++++.+...|.+           ++||+|||+|++++||++++.||.+|+|
T Consensus       364 ~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i  420 (515)
T TIGR03098       364 VAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMI  420 (515)
T ss_pred             hhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccce
Confidence            999999999888776643           2489999999999999999999999986

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=1.3e-53  Score=425.76  Aligned_cols=398  Identities=26%  Similarity=0.382  Sum_probs=323.5

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCC-----cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeC
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQ-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~-----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~   76 (435)
                      ++.+.|.+.++++|+++|++..+     +.+||+||+++++++|.+|.+                 +|+++||+|+++++
T Consensus         8 ~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~-----------------~g~~~~~~v~i~~~   70 (517)
T PRK08008          8 HLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYS-----------------LGIRKGDKVALHLD   70 (517)
T ss_pred             cHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence            57899999999999999999753     789999999999999999998                 49999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC---ccccCCCC-CCCCCc
Q 013869           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA---KFSLIPPV-PNVSSE  152 (435)
Q Consensus        77 ~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~  152 (435)
                      |+++++++++||+++|++++++++..+.+++.+++++++++.++++.+..+.+.+.......   .+...... ......
T Consensus        71 n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (517)
T PRK08008         71 NCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGV  150 (517)
T ss_pred             CCHHHHHHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcccccc
Confidence            99999999999999999999999999999999999999999999999887776655433211   11111100 000000


Q ss_pred             ccccc---c--hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHH
Q 013869          153 TTVFD---Q--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF  227 (435)
Q Consensus       153 ~~~~~---~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~  227 (435)
                      .....   .  ..........++++++++|||||||.||+|.++|.++............+..++++++.+|++|..+..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  230 (517)
T PRK08008        151 SSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQC  230 (517)
T ss_pred             cCHHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHH
Confidence            00000   0  000112234568999999999999999999999999986554444444678899999999999998877


Q ss_pred             HHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEE
Q 013869          228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL  307 (435)
Q Consensus       228 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~  307 (435)
                      ..++.++..|+++++.+++++..+++.          ++++++|++.++|.+++.++......        ......++.
T Consensus       231 ~~~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~--------~~~~~~l~~  292 (517)
T PRK08008        231 TAAMAAFSAGATFVLLEKYSARAFWGQ----------VCKYRATITECIPMMIRTLMVQPPSA--------NDRQHCLRE  292 (517)
T ss_pred             HHHHHHHhcCcEEEEccccCHHHHHHH----------HHHcCCcEEechHHHHHHHHhCCCcc--------cccccccee
Confidence            788999999999999999999988888          56689999999999999887643211        112346777


Q ss_pred             EEecCCCCCHHHHHHHHHHhCCcccccccCccccchhcc-CCCCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEE
Q 013869          308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISN-PLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICV  385 (435)
Q Consensus       308 i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~-~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v  385 (435)
                      +.++ .+++.++.+.|.+.++.++++.||+||++..++. .........++|+|+++++++++|+++...+.+ .|||++
T Consensus       293 ~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel~v  371 (517)
T PRK08008        293 VMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEIGEICI  371 (517)
T ss_pred             eEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCccccCCCCcEEEEECCCCCCCCCCCcceEEE
Confidence            7765 4789999999999999999999999999764442 222334567899999999999999988887766 799999


Q ss_pred             ec---CCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          386 KS---PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       386 ~~---~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +|   ++++.||+++++.+.+.|+.+|||+|||+|++|+||++++.||.+|+|
T Consensus       372 ~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i  424 (517)
T PRK08008        372 KGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMI  424 (517)
T ss_pred             eCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceE
Confidence            97   689999999999999999889999999999999999999999999986

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.6e-54  Score=429.72  Aligned_cols=397  Identities=25%  Similarity=0.397  Sum_probs=327.8

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      ||+.+.|.++++.+|+++|++..++.+||.||.++++++|.+|.+.                 |+++|++|+++++|+++
T Consensus        17 ~n~~~~~~~~a~~~~~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~-----------------g~~~g~~V~i~~~~~~~   79 (542)
T PRK07786         17 QNWVNQLARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRR-----------------GVGFGDRVLILMLNRTE   79 (542)
T ss_pred             cCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence            5889999999999999999999999999999999999999999984                 99999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCc--cccCCCCC--C-CCCcccc
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVP--N-VSSETTV  155 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~-~~~~~~~  155 (435)
                      ++++++||+++|++++|+++..+.+++..+++.+++++++++....+.+.......+..  ...+....  . .......
T Consensus        80 ~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (542)
T PRK07786         80 FVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLL  159 (542)
T ss_pred             HHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCcccccCHHHHh
Confidence            99999999999999999999999999999999999999999988776655443322211  11110000  0 0000000


Q ss_pred             ccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccC-CCCCeeEEeecchhhhHHHHHHHHHH
Q 013869          156 FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEY-TSADQFLHCLPLHHVHGLFNALLAPL  234 (435)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~-~~~~~~l~~~pl~~~~g~~~~~~~~l  234 (435)
                      ..............+++++++|||||||.||+|.++|+++...+......+++ ...++++...|++|.+|+. .++.++
T Consensus       160 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~l  238 (542)
T PRK07786        160 AEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIG-SMLPGL  238 (542)
T ss_pred             hccCCCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHH-HHHHHH
Confidence            00001112234456789999999999999999999999999888887777776 5778999999999999985 689999


Q ss_pred             HcCCEEEEcC--CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecC
Q 013869          235 YAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (435)
Q Consensus       235 ~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G  312 (435)
                      ..|+++++.+  .+++..+++.          ++++++|++.++|+++..+++......         ...++|.+++||
T Consensus       239 ~~G~~~v~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~l~~~~~~~~---------~~~~lr~i~~gg  299 (542)
T PRK07786        239 LLGAPTVIYPLGAFDPGQLLDV----------LEAEKVTGIFLVPAQWQAVCAEQQARP---------RDLALRVLSWGA  299 (542)
T ss_pred             HccCEEEEccCCCcCHHHHHHH----------HHHcCCeEEEehHHHHHHHHhCcccCc---------cCcceEEEEECC
Confidence            9999999865  5688888888          666999999999999999987643211         112689999999


Q ss_pred             CCCCHHHHHHHHHHh-CCcccccccCccccchhccCCC--CCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecC
Q 013869          313 SALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSP  388 (435)
Q Consensus       313 ~~l~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~  388 (435)
                      +++++++++.+.+.| +.++++.||+||++.+.+....  ......++|+|++++.++|+|+++...+.+ .|||+++|+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~  379 (542)
T PRK07786        300 APASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGEVGEIVYRAP  379 (542)
T ss_pred             CCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEECCCCCCCcCCCceEEEEECh
Confidence            999999999999998 7899999999999866543222  224567899999999999999888887766 799999999


Q ss_pred             CccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          389 SLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       389 ~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      .++.||+++++.+...|. +|||+|||++++++||++++.||.+|+|
T Consensus       380 ~~~~gy~~~~~~~~~~f~-~~~~~TGDl~~~~~~g~~~i~GR~~d~i  425 (542)
T PRK07786        380 TLMSGYWNNPEATAEAFA-GGWFHSGDLVRQDEEGYVWVVDRKKDMI  425 (542)
T ss_pred             hhhhhhcCCHHHHHHHhh-CCcccccceEEEcCCceEEEEecccceE
Confidence            999999999999998884 7999999999999999999999999975

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=9.7e-54  Score=428.91  Aligned_cols=396  Identities=20%  Similarity=0.284  Sum_probs=319.1

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeC--CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869            1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~   78 (435)
                      +|+.+.|.+++.++|+++|+++.  ++.+||.||.+++.++|..|.+.                 |+++|++|+++++|+
T Consensus        28 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~-----------------g~~~g~~V~i~~~~~   90 (546)
T PLN02330         28 LTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSL-----------------GLRKGQVVVVVLPNV   90 (546)
T ss_pred             CcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEECCCc
Confidence            47889999999999999999973  67999999999999999999994                 999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCC--CCCCccccc
Q 013869           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVP--NVSSETTVF  156 (435)
Q Consensus        79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  156 (435)
                      ++++++++||+++|++++|+++..+.+++.++++.++++++++++...+.+....    ..+..+....  .........
T Consensus        91 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~  166 (546)
T PLN02330         91 AEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG----LPVIVLGEEKIEGAVNWKELL  166 (546)
T ss_pred             hHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC----CcEEEecCCCCCCcccHHHHH
Confidence            9999999999999999999999999999999999999999999998777654321    1111111100  000000000


Q ss_pred             cc----hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhcc--CCCCCeeEEeecchhhhHHHHHH
Q 013869          157 DQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNAL  230 (435)
Q Consensus       157 ~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~l~~~pl~~~~g~~~~~  230 (435)
                      ..    ...........+++++++|||||||.||+|.++|+++..++.......+  ....++.+..+|++|.+++...+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~  246 (546)
T PLN02330        167 EAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGIC  246 (546)
T ss_pred             hhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHH
Confidence            00    0001122345689999999999999999999999998876654222221  22346789999999999987678


Q ss_pred             HHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhcc--ccEEE
Q 013869          231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK--QLRLM  308 (435)
Q Consensus       231 ~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~--~lr~i  308 (435)
                      +.++..|+++++.+.+++..++..          ++++++|.+.++|+++..+++....        ...+++  ++|.+
T Consensus       247 ~~~l~~g~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~--------~~~~~~~~~l~~i  308 (546)
T PLN02330        247 CATLRNKGKVVVMSRFELRTFLNA----------LITQEVSFAPIVPPIILNLVKNPIV--------EEFDLSKLKLQAI  308 (546)
T ss_pred             HHHhhcCCEEEEecccCHHHHHHH----------HHHcCCeeeecCCHHHHHHHhCccc--------cccccchheeeeE
Confidence            889999999999999999998888          5669999999999999999875321        111222  57999


Q ss_pred             EecCCCCCHHHHHHHHHHh-CCcccccccCccccchhccCCC-----CCCCCCccceecCCCeEEEec-CCCCCCCCc-c
Q 013869          309 MCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNPLPGVQVKIAE-DESGSDAAG-V  380 (435)
Q Consensus       309 ~~~G~~l~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~-----~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~~-~  380 (435)
                      ++||+++++++++.|.+.| +.++++.||+||++.+......     ......++|.|+++++++++| +++...+.+ .
T Consensus       309 ~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~  388 (546)
T PLN02330        309 MTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTP  388 (546)
T ss_pred             EEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCc
Confidence            9999999999999999998 8999999999999765442211     123456899999999999998 456666666 7


Q ss_pred             ceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          381 GEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       381 Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |||+++|+.++.||+++++.+...++.+|||+|||+|++++||++++.||.+|+|
T Consensus       389 Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i  443 (546)
T PLN02330        389 GELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELI  443 (546)
T ss_pred             eEEEEecchhhhhhccCccchhhhccCCCceecccEEEEeCCCcEEEEechHHhh
Confidence            9999999999999999999999888889999999999999999999999999975

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.8e-54  Score=437.21  Aligned_cols=394  Identities=22%  Similarity=0.314  Sum_probs=309.0

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeC---------CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeE
Q 013869            1 MEVFKAAYKKGSMARDSVAIRAD---------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI   71 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~---------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V   71 (435)
                      +|+.+.|.++++.+|+++|++..         .+.+||+||.++++++|++|.+                  .+++||+|
T Consensus        21 ~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~------------------~~~~gd~V   82 (631)
T PRK07769         21 TNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQ------------------VTKPGDRV   82 (631)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHH------------------hcCCCCEE
Confidence            36889999999999999999863         2579999999999999999987                  37999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHhCCeEEeC-CCCCC--HHHHHHHHhcCCccEEEechhhHHHHHHHHhccC----CccccCC
Q 013869           72 GIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYP--ESELLHVMHDSDISMVLSTEDYREVLQNVASKSG----AKFSLIP  144 (435)
Q Consensus        72 ~i~~~~~~~~~~~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~  144 (435)
                      +++++|++++++++|||+++|++++|+ ++..+  .+++.++++.+++++++++.+..+.+.......+    ..+..+.
T Consensus        83 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (631)
T PRK07769         83 AILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVD  162 (631)
T ss_pred             EEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcc
Confidence            999999999999999999999999999 45554  5789999999999999999887666544332211    1111111


Q ss_pred             CCCCCCCccccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhh
Q 013869          145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVH  224 (435)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  224 (435)
                         .....  . .  .........++++++++|||||||.||+|.++|+++...+......+++.++++++..+|++|..
T Consensus       163 ---~~~~~--~-~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~  234 (631)
T PRK07769        163 ---AVPDE--V-G--ATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDM  234 (631)
T ss_pred             ---ccccc--c-c--cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCch
Confidence               10000  0 0  00111234678999999999999999999999999998888888888899999999999999999


Q ss_pred             HHHHHHHHHHHcCCEEEEcCC--c--chhHHHHHHHhhcCCCCCcccccc---ceeccccHHHHHHHhhhccccHHHHHH
Q 013869          225 GLFNALLAPLYAGATVEFMPK--F--SVRGIWQRWRESYPVNGNRAGEAI---TAFTGVPTMYTRLIQGYEAMDTELQAA  297 (435)
Q Consensus       225 g~~~~~~~~l~~G~~~~~~~~--~--~~~~~~~~~~~~~~~~~~i~~~~~---t~~~~~P~~~~~l~~~~~~~~~~~~~~  297 (435)
                      |+.. ++.++..|++++++++  +  ++..+++.          +.++++   +.+..+|.++..++.... ...  ...
T Consensus       235 gl~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~~p~~~~~l~~~~~-~~~--~~~  300 (631)
T PRK07769        235 GLIT-VLLPALLGHYITFMSPAAFVRRPGRWIRE----------LARKPGGTGGTFSAAPNFAFEHAAARG-LPK--DGE  300 (631)
T ss_pred             hhHH-HHHHHhhCCeEEEEChHHHHhCHHHHHHH----------HHhhccccCceEeeCCchHHHHHHhhc-cch--hcc
Confidence            9875 6677888999988764  3  66666666          444554   889999998877764211 000  000


Q ss_pred             hhhhccccEEEEecCCCCCHHHHHHHHHHhC---C---cccccccCccccchhccCCCCC--------------------
Q 013869          298 SASAAKQLRLMMCGSSALPLPVMQQWETITG---H---RLLERYGMTEFVMAISNPLRGA--------------------  351 (435)
Q Consensus       298 ~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~---~---~l~~~YG~tE~~~~~~~~~~~~--------------------  351 (435)
                      ...+++++|.+++||+++++++.+.|.+.|+   +   .+++.||+||++.+++......                    
T Consensus       301 ~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  380 (631)
T PRK07769        301 PPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEV  380 (631)
T ss_pred             cCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEec
Confidence            1246789999999999999999999999873   2   5999999999876554321110                    


Q ss_pred             -------CCCCccceecCCCeEEEec-CCCCCCCCc-cceEEEecCCccccccCCchhccccccc---------------
Q 013869          352 -------RKAGTVGNPLPGVQVKIAE-DESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTA---------------  407 (435)
Q Consensus       352 -------~~~~~~G~p~~~~~~~i~d-~~~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~---------------  407 (435)
                             ....++|+|.++++++|+| +++..++.+ .||||++|++++.||+++++.+.+.|..               
T Consensus       381 ~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~  460 (631)
T PRK07769        381 PADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAP  460 (631)
T ss_pred             CCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcc
Confidence                   0124789999999999999 456776666 7999999999999999999999988842               


Q ss_pred             --CCccccCceEEEcCCccEEEecccccCC
Q 013869          408 --DGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       408 --~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                        +|||+|||+|++ +||+|+|+||.||+|
T Consensus       461 ~~~gw~~TGDlg~~-~dG~l~i~GR~~d~I  489 (631)
T PRK07769        461 DDALWVRTGDYGVY-FDGELYITGRVKDLV  489 (631)
T ss_pred             cCCCeeeccccccE-ECCEEEEEcccccEE
Confidence              489999999999 499999999999986

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=6.8e-54  Score=434.96  Aligned_cols=394  Identities=21%  Similarity=0.295  Sum_probs=306.5

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeC---------CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeE
Q 013869            1 MEVFKAAYKKGSMARDSVAIRAD---------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI   71 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~---------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V   71 (435)
                      +|+.+.|.++++++|+++|++..         .+.+||+||.++++++|++|.+                  .+++||+|
T Consensus        34 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~------------------~~~~gd~V   95 (612)
T PRK12476         34 TTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQ------------------VAGPGDRV   95 (612)
T ss_pred             CcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHH------------------hcCCCCEE
Confidence            47888999999999999999862         2489999999999999999987                  48999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHhCCeEEeC-CCCCC--HHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC----ccccCC
Q 013869           72 GIVAKPSFEFVAGVLGTWFSGCIAVPL-ALSYP--ESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA----KFSLIP  144 (435)
Q Consensus        72 ~i~~~~~~~~~~~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~----~~~~~~  144 (435)
                      +++++|++++++++|||+++|++++|+ ++.++  .+++.++++.+++++++++++..+.+.........    .+..+.
T Consensus        96 ~l~~~n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~  175 (612)
T PRK12476         96 AILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAID  175 (612)
T ss_pred             EEECCCChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEec
Confidence            999999999999999999999999999 57766  78999999999999999998887766544332211    111111


Q ss_pred             CCCCCCCccccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhcc-CCCCCeeEEeecchhh
Q 013869          145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE-YTSADQFLHCLPLHHV  223 (435)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~~l~~~pl~~~  223 (435)
                      .   ....     ...........++++++++|||||||.||||.++|+++..++......++ +.+.+++++++|++|.
T Consensus       176 ~---~~~~-----~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~  247 (612)
T PRK12476        176 A---IPDS-----AGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHD  247 (612)
T ss_pred             c---cccc-----ccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccc
Confidence            1   1000     00011112346789999999999999999999999999888777766677 7888999999999999


Q ss_pred             hHHHHHHHHHHHcCCEEEEcCC--c--chhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhh
Q 013869          224 HGLFNALLAPLYAGATVEFMPK--F--SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA  299 (435)
Q Consensus       224 ~g~~~~~~~~l~~G~~~~~~~~--~--~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  299 (435)
                      .|+.. ++.++..|+++++..+  +  ++..+++.+.+        .+++++.+..+|+++..++......    .....
T Consensus       248 ~g~~~-~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~--------~~~~~t~~~~~P~~~~~l~~~~~~~----~~~~~  314 (612)
T PRK12476        248 MGLSM-IGFPAVYGGHSTLMSPTAFVRRPQRWIKALSE--------GSRTGRVVTAAPNFAYEWAAQRGLP----AEGDD  314 (612)
T ss_pred             cchHH-HHHHHhcCCeEEEECHHHHHHHHHHHHHHHhh--------hccCCeEEEeCCcHHHHHHHHhcCh----hhhcC
Confidence            99865 4445555666555543  2  56666666321        3478999999999988887631100    00112


Q ss_pred             hhccccEEEEecCCCCCHHHHHHHHHHh---CC---cccccccCccccchhccCCCCC----------------------
Q 013869          300 SAAKQLRLMMCGSSALPLPVMQQWETIT---GH---RLLERYGMTEFVMAISNPLRGA----------------------  351 (435)
Q Consensus       300 ~~l~~lr~i~~~G~~l~~~l~~~~~~~~---~~---~l~~~YG~tE~~~~~~~~~~~~----------------------  351 (435)
                      .+++++| +++||++++.++.+.|.+.|   ++   ++++.||+||++..++......                      
T Consensus       315 ~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  393 (612)
T PRK12476        315 IDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAA  393 (612)
T ss_pred             cchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCC
Confidence            3578899 99999999999999999987   43   4899999999875443211100                      


Q ss_pred             -----CCCCccceecCCCeEEEecCC-CCCCCCc-cceEEEecCCccccccCCchhcccccc------------------
Q 013869          352 -----RKAGTVGNPLPGVQVKIAEDE-SGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFT------------------  406 (435)
Q Consensus       352 -----~~~~~~G~p~~~~~~~i~d~~-~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~------------------  406 (435)
                           ....++|+|+++++++|+|++ ++.++.+ .|||+++|++++.||+++++.+.+.|.                  
T Consensus       394 ~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~  473 (612)
T PRK12476        394 DAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAAD  473 (612)
T ss_pred             CCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccC
Confidence                 012478999999999999987 7877766 799999999999999999999988884                  


Q ss_pred             cCCccccCceEEEcCCccEEEecccccCC
Q 013869          407 ADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       407 ~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +++||+|||+|++ +||+|+|+||+||+|
T Consensus       474 ~~~w~~TGDlg~~-~dG~l~i~GR~~d~I  501 (612)
T PRK12476        474 DGTWLRTGDLGVY-LDGELYITGRIADLI  501 (612)
T ss_pred             CCCeeecccccee-ECCEEEEEeccCcEE
Confidence            1359999999998 599999999999986

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=4.3e-54  Score=471.87  Aligned_cols=388  Identities=21%  Similarity=0.343  Sum_probs=326.5

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      ++.+.|.++++++|+++|+++.++.+||+||.++++++|++|.+.                 |+++|++|++++++++++
T Consensus       459 ~l~~~~~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~la~~L~~~-----------------g~~~g~~V~l~~~~~~~~  521 (1296)
T PRK10252        459 TLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRER-----------------GVKPGDSVAVALPRSVFL  521 (1296)
T ss_pred             CHHHHHHHHHHhCCCCeEEEcCCCcEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence            578899999999999999999999999999999999999999995                 999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhh
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (435)
                      +++++||+++|++++|+++.++.+++.++++.+++++++++.+....+...    . ..... .....      ......
T Consensus       522 i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~----~-~~~~~-~~~~~------~~~~~~  589 (1296)
T PRK10252        522 TLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV----P-DLTSL-CYNAP------LAPQGA  589 (1296)
T ss_pred             HHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC----C-Cceee-ecccc------cccccC
Confidence            999999999999999999999999999999999999999998765543221    0 00000 00000      000001


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEE
Q 013869          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (435)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~  241 (435)
                      .+.....++++++++|||||||.||||.++|+++.+.+.+....+++.+.++++...|++|..+++ .++.++..|++++
T Consensus       590 ~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~  668 (1296)
T PRK10252        590 APLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVW-EFFWPFIAGAKLV  668 (1296)
T ss_pred             CCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHH-HHHHHHhCCCEEE
Confidence            111233678999999999999999999999999999999999999999999999999999999876 6999999999999


Q ss_pred             EcCC---cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHH
Q 013869          242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (435)
Q Consensus       242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~  318 (435)
                      +.++   .++..+++.          +.++++|++.++|+++..+++.....      .....++++|.+++||++++++
T Consensus       669 ~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~l~~l~~~~~~~------~~~~~~~~lr~i~~gGe~l~~~  732 (1296)
T PRK10252        669 MAEPEAHRDPLAMQQF----------FAEYGVTTTHFVPSMLAAFVASLTPE------GARQSCASLRQVFCSGEALPAD  732 (1296)
T ss_pred             ECChhccCCHHHHHHH----------HHHcCCeEEEeCHHHHHHHHhhhccc------cccccCCCccEEEEecCCCCHH
Confidence            9874   466667666          66699999999999999988753211      1122467899999999999999


Q ss_pred             HHHHHHHHhCCcccccccCccccchhccCCC-C------CCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCc
Q 013869          319 VMQQWETITGHRLLERYGMTEFVMAISNPLR-G------ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSL  390 (435)
Q Consensus       319 l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~------~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~  390 (435)
                      +.+.|.+.++.++++.||+||++..++.... .      .....++|+|+++++++|+|++++.++.+ .|||+++|+.+
T Consensus       733 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~g~~Gel~i~g~~~  812 (1296)
T PRK10252        733 LCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARMRPVPPGVAGDLYLTGIQL  812 (1296)
T ss_pred             HHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEECCCCCCCCCCCceEEEeccccc
Confidence            9999999889999999999999865542211 1      23356899999999999999999988887 79999999999


Q ss_pred             cccccCCchhcccccccC------CccccCceEEEcCCccEEEecccccCC
Q 013869          391 FKEYWKLPKVTKDSFTAD------GFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       391 ~~gy~~~~~~~~~~~~~~------g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +.||+++++.|.+.|..+      +||+|||+|++++||+++++||.||+|
T Consensus       813 ~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~i  863 (1296)
T PRK10252        813 AQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQL  863 (1296)
T ss_pred             chhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeE
Confidence            999999999999998543      499999999999999999999999975

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=2e-53  Score=428.38  Aligned_cols=400  Identities=26%  Similarity=0.350  Sum_probs=326.5

Q ss_pred             ChHHHHHHHhcccCCCeeEEEe--CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869            1 MEVFKAAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~   78 (435)
                      ++|.+.|.+.++++|+++|++.  .++.+||+||.++++++|++|.+.                 |+++|++|+++++|+
T Consensus        16 ~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~-----------------gi~~g~~V~i~~~~~   78 (559)
T PRK08315         16 QTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLAL-----------------GIEKGDRVGIWAPNV   78 (559)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCC
Confidence            4788999999999999999987  567899999999999999999994                 999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhH-----HHHHHHHhcc-------------CC--
Q 013869           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKS-------------GA--  138 (435)
Q Consensus        79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~-------------~~--  138 (435)
                      +++++++|||+++|++++|+++..+.+++..+++.+++++++++....     ..+.+.....             +.  
T Consensus        79 ~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (559)
T PRK08315         79 PEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELR  158 (559)
T ss_pred             hHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCce
Confidence            999999999999999999999999999999999999999999987532     1222211111             00  


Q ss_pred             ccccCCCCC--CCCCccccc-------cchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCC
Q 013869          139 KFSLIPPVP--NVSSETTVF-------DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT  209 (435)
Q Consensus       139 ~~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~  209 (435)
                      .........  .........       .............+++++++|||||||.||+|.++|+++..++......+++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~  238 (559)
T PRK08315        159 RVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLT  238 (559)
T ss_pred             eEEeecccCCcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCC
Confidence            000000000  000000000       00001112234578899999999999999999999999999998888888999


Q ss_pred             CCCeeEEeecchhhhHHHHHHHHHHHcCCEEE-EcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhc
Q 013869          210 SADQFLHCLPLHHVHGLFNALLAPLYAGATVE-FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE  288 (435)
Q Consensus       210 ~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  288 (435)
                      ++++++...|++|..++...++.++..|++++ ....+++..+++.          +.++++|++.++|+++..++....
T Consensus       239 ~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~~~~~~~  308 (559)
T PRK08315        239 EEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAA----------VEEERCTALYGVPTMFIAELDHPD  308 (559)
T ss_pred             CCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHH----------HHHcCCeEEecchHHHHHHHhCcc
Confidence            99999999999999998888999999999998 4556788888887          566999999999999988876422


Q ss_pred             cccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCc-ccccccCccccchhccCCCC---CCCCCccceecCCC
Q 013869          289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHR-LLERYGMTEFVMAISNPLRG---ARKAGTVGNPLPGV  364 (435)
Q Consensus       289 ~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~-l~~~YG~tE~~~~~~~~~~~---~~~~~~~G~p~~~~  364 (435)
                              .....++++|.++++|++++.++++.|.+.++.. +++.||+||++.+++.....   .....++|+|++++
T Consensus       309 --------~~~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~  380 (559)
T PRK08315        309 --------FARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHL  380 (559)
T ss_pred             --------cCCCCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCc
Confidence                    1223578999999999999999999999988764 99999999998765532221   23467899999999


Q ss_pred             eEEEecCC-CCCCCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          365 QVKIAEDE-SGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       365 ~~~i~d~~-~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +++|+|++ ++.++.+ .|||+++|+.++.||+++++.++..|..++||+|||+|++++||.++++||.+|+|
T Consensus       381 ~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i  453 (559)
T PRK08315        381 EVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMI  453 (559)
T ss_pred             EEEEEcCccCCcCCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceE
Confidence            99999987 7777666 79999999999999999999999888778999999999999999999999999875

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.6e-53  Score=428.57  Aligned_cols=401  Identities=24%  Similarity=0.381  Sum_probs=320.7

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +++.+.|.++++++|+++|++..++.+||.||.++++++|.+|.++                .|+++||+|+++++|+++
T Consensus        24 ~~~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~----------------~gi~~gd~V~i~~~n~~e   87 (562)
T PRK12492         24 KSVVEVFERSCKKFADRPAFSNLGVTLSYAELERHSAAFAAYLQQH----------------TDLVPGDRIAVQMPNVLQ   87 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEecCCceeeHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEECCCCHH
Confidence            3688999999999999999999899999999999999999999873                389999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCc-cccC------CCC-------
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FSLI------PPV-------  146 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~------~~~-------  146 (435)
                      ++++++||+++|++++|+++.++.+++.++++.++++++++++...+.+.......... ....      ...       
T Consensus        88 ~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (562)
T PRK12492         88 YPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNT  167 (562)
T ss_pred             HHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhccc
Confidence            99999999999999999999999999999999999999999876655443322211000 0000      000       


Q ss_pred             --C-------C--CCCccccccc-----hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhcc---
Q 013869          147 --P-------N--VSSETTVFDQ-----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE---  207 (435)
Q Consensus       147 --~-------~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~---  207 (435)
                        .       .  ..........     ...........+++++++|||||||.||+|.++|+++..++......+.   
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~  247 (562)
T PRK12492        168 VVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLG  247 (562)
T ss_pred             ccccccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccc
Confidence              0       0  0000000000     0000112345689999999999999999999999999877766555442   


Q ss_pred             ------CCC-CCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcC-CcchhHHHHHHHhhcCCCCCccccccceeccccHH
Q 013869          208 ------YTS-ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM  279 (435)
Q Consensus       208 ------~~~-~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~  279 (435)
                            ... .++++..+|++|.+++...++..+..|.++++.. ++++..++..          ++++++|++.++|++
T Consensus       248 ~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~  317 (562)
T PRK12492        248 PDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKE----------LGKWRFSALLGLNTL  317 (562)
T ss_pred             ccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHH----------HHHhCCceeeCcHHH
Confidence                  222 3477899999999998776777788888776654 4577777776          677999999999999


Q ss_pred             HHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCC-CCCCCCccc
Q 013869          280 YTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVG  358 (435)
Q Consensus       280 ~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~~~~~~G  358 (435)
                      +..+++..+.        ...+++++|.+++||++++.++.+.|.+.+++++++.||+||++.+++.... .....+++|
T Consensus       318 ~~~l~~~~~~--------~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G  389 (562)
T PRK12492        318 FVALMDHPGF--------KDLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVG  389 (562)
T ss_pred             HHHHHhCcCc--------ccccccceeEEEeccccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcccccCCccc
Confidence            9999875321        2235688999999999999999999999999999999999999876553322 223457899


Q ss_pred             eecCCCeEEEecCCCCCCCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          359 NPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       359 ~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +|+++++++|+|+++..++.+ .|||+++|+.++.||+++++.+.+.|+.+|||+|||+|+++++|++++.||.+|+|
T Consensus       390 ~p~~~~~v~ivd~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i  467 (562)
T PRK12492        390 IPVPGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLI  467 (562)
T ss_pred             eecCCCEEEEECCCCCCCCCCCceEEEEeCCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeE
Confidence            999999999999988887766 79999999999999999999999998778999999999999999999999999985

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=2.2e-53  Score=425.28  Aligned_cols=399  Identities=20%  Similarity=0.299  Sum_probs=323.1

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      ++.+.|.++++  |+++|+++.++++||+||+++++++|.+|.+.                 |+++|++|+++++|++++
T Consensus        26 ~~~~~~~~~a~--p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~-----------------g~~~g~~V~v~~~n~~~~   86 (536)
T PRK10946         26 PLTDILTRHAA--SDAIAVICGERQFSYRELNQASDNLACSLRRQ-----------------GIKPGDTALVQLGNVAEF   86 (536)
T ss_pred             cHHHHHHHhhC--CCCeEEEeCCCcccHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCChHHH
Confidence            57888988887  99999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhH-----HHHHHHHhccC-CccccCCCCCCCCCccc-
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG-AKFSLIPPVPNVSSETT-  154 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-  154 (435)
                      +++++||+++|++++++.+.....++..+++.++++.++++....     ..........+ .....+........... 
T Consensus        87 ~~~~la~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  166 (536)
T PRK10946         87 YITFFALLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDGEHSLDDA  166 (536)
T ss_pred             HHHHHHHHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCCCccHHHH
Confidence            999999999999888877777788899999999999999986431     11111211111 11111110000000000 


Q ss_pred             cccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHH-HHHHH
Q 013869          155 VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLAP  233 (435)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~~  233 (435)
                      ..............++++++++|||||||.||+|.++|+++...+......+++.+++++++.+|++|.+++.. .++.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~  246 (536)
T PRK10946        167 INHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGV  246 (536)
T ss_pred             hhCcccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHH
Confidence            00001111123456789999999999999999999999999999998888889999999999999999887653 57888


Q ss_pred             HHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCC
Q 013869          234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS  313 (435)
Q Consensus       234 l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~  313 (435)
                      +..|+++++.+.+++...+..          ++++++|++.++|.++..+++....      ......++++|.+++||+
T Consensus       247 l~~g~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~p~~~~~l~~~~~~------~~~~~~~~~l~~v~~gg~  310 (536)
T PRK10946        247 FLAGGTVVLAPDPSATLCFPL----------IEKHQVNVTALVPPAVSLWLQAIAE------GGSRAQLASLKLLQVGGA  310 (536)
T ss_pred             hhcCcEEEECCCCCHHHHHHH----------HHHhCCcEEEeChHHHHHHHhhhcc------cCccccccceeEEEECCC
Confidence            999999999998888888877          6669999999999999999875321      112235688999999999


Q ss_pred             CCCHHHHHHHHHHhCCcccccccCccccchhccC-CCCCCCCCccceec-CCCeEEEecCCCCCCCCc-cceEEEecCCc
Q 013869          314 ALPLPVMQQWETITGHRLLERYGMTEFVMAISNP-LRGARKAGTVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKSPSL  390 (435)
Q Consensus       314 ~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~-~~~~~~~~~~G~p~-~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~  390 (435)
                      ++++++.+.|.+.+++++++.||+||++...... ........++|+|+ +++.++|+|++++.++.+ .|||+++|+.+
T Consensus       311 ~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~  390 (536)
T PRK10946        311 RLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEVGRLMTRGPYT  390 (536)
T ss_pred             CCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCccccccccCCcccCCCceEEEECCCCCCCCCCCccEEEEecCcc
Confidence            9999999999999999999999999975443321 11223457899998 799999999888887666 79999999999


Q ss_pred             cccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          391 FKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       391 ~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +.||+++++.+...|+.+|||+|||+|++|+||++++.||.+|+|
T Consensus       391 ~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i  435 (536)
T PRK10946        391 FRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQI  435 (536)
T ss_pred             chhhcCCcccchhhcccCCceecCceEEECCCCcEEEecccccee
Confidence            999999999999999889999999999999999999999999975

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2.8e-54  Score=504.48  Aligned_cols=386  Identities=23%  Similarity=0.354  Sum_probs=329.3

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      +++++|.++++++||++|+++.++++||+||.++++++|+.|.++                 |+++|++|+|+++|++++
T Consensus      3096 ~~~~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------gv~~g~~V~l~~~~s~~~ 3158 (3956)
T PRK12467       3096 LVHQLIEAQVARTPEAPALVFGDQQLSYAELNRRANRLAHRLIAI-----------------GVGPDVLVGVAVERSVEM 3158 (3956)
T ss_pred             cHHHHHHHHHHhCCCcceEeeCCcccCHHHHHHHHHHHHHHHHHc-----------------CCCCCCeEEEEeCCCHHH
Confidence            688999999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhh
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (435)
                      +++++||+++|++++|+++.++.+++.++++.+++++++++....+.+....   ......+.   ...    .......
T Consensus      3159 vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~---~~~~~~~~---~~~----~~~~~~~ 3228 (3956)
T PRK12467       3159 IVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPA---GDTALTLD---RLD----LNGYSEN 3228 (3956)
T ss_pred             HHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhccccc---CCceeeec---chh----hcccCCC
Confidence            9999999999999999999999999999999999999999987654432110   00111111   000    0011111


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEE
Q 013869          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (435)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~  241 (435)
                      .+.....+++++|++|||||||.||||.++|+++.+.+.+....+++.++|+++...|++|..+.. .++.+|..|++++
T Consensus      3229 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~l~ 3307 (3956)
T PRK12467       3229 NPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQE-RFLWTLICGGCLV 3307 (3956)
T ss_pred             CCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHH-HHHHHHhCCCEEE
Confidence            122345789999999999999999999999999999999999999999999999999999998875 6999999999999


Q ss_pred             EcCC--cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHH
Q 013869          242 FMPK--FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (435)
Q Consensus       242 ~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l  319 (435)
                      +++.  +++..+++.          +.++++|++.++|+++..+++..          ....++++|.+++||+++++++
T Consensus      3308 i~~~~~~~~~~l~~~----------i~~~~vt~~~~~Ps~l~~l~~~~----------~~~~~~~lr~~~~gGe~~~~~~ 3367 (3956)
T PRK12467       3308 VRDNDLWDPEELWQA----------IHAHRISIACFPPAYLQQFAEDA----------GGADCASLDIYVFGGEAVPPAA 3367 (3956)
T ss_pred             ECCcccCCHHHHHHH----------HHHcCCEEEEcCHHHHHHHHhcc----------cccCCCCceEEEEecCCCCHHH
Confidence            9986  677888887          66699999999999999997642          2235788999999999999999


Q ss_pred             HHHHHHHh-CCcccccccCccccchhccCCC-C----CCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccc
Q 013869          320 MQQWETIT-GHRLLERYGMTEFVMAISNPLR-G----ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFK  392 (435)
Q Consensus       320 ~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~-~----~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~  392 (435)
                      .++|.+.+ +.++++.||+||+++.++.... .    .....++|+|++|++++|+|++++.++.+ .|||+|+|+.+++
T Consensus      3368 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~vp~G~~GEL~i~G~~v~~ 3447 (3956)
T PRK12467       3368 FEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLNPVPVGVAGELYIGGVGLAR 3447 (3956)
T ss_pred             HHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEECCCCCCCCCCCCceEEEcchhhhh
Confidence            99999887 5789999999999875542111 1    12346899999999999999999988887 7999999999999


Q ss_pred             cccCCchhcccccccCC-------ccccCceEEEcCCccEEEecccccCC
Q 013869          393 EYWKLPKVTKDSFTADG-------FFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       393 gy~~~~~~~~~~~~~~g-------~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ||+++|+.|.++|..++       ||+|||+|++++||+|+|.||+||+|
T Consensus      3448 GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~i 3497 (3956)
T PRK12467       3448 GYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQV 3497 (3956)
T ss_pred             hccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceE
Confidence            99999999999996554       69999999999999999999999986

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-53  Score=422.49  Aligned_cols=380  Identities=24%  Similarity=0.397  Sum_probs=315.5

Q ss_pred             HHhcccCCCeeEEEe--CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHHHHHH
Q 013869            8 YKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV   85 (435)
Q Consensus         8 ~~~~~~~p~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~~~~~   85 (435)
                      ..+++.+||++|+++  +++.+||.||.++++++|++|.+                 .|+++|++|+++++|++++++++
T Consensus         2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~-----------------~g~~~~~~v~i~~~~~~~~~~~~   64 (488)
T PRK09088          2 AFHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRR-----------------RGCVDGERLAVLARNSVWLVALH   64 (488)
T ss_pred             chhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHHHHHHH
Confidence            456788999999987  67899999999999999999998                 49999999999999999999999


Q ss_pred             HHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhhhhcc
Q 013869           86 LGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD  165 (435)
Q Consensus        86 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (435)
                      |||+++|++++|+++..+.+++.+++++++++++++++......        .....+   ......  . .........
T Consensus        65 la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~--------~~~~~~---~~~~~~--~-~~~~~~~~~  130 (488)
T PRK09088         65 FACARVGAIYVPLNWRLSASELDALLQDAEPRLLLGDDAVAAGR--------TDVEDL---AAFIAS--A-DALEPADTP  130 (488)
T ss_pred             HHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEEEcchhhccc--------ccccch---hhhhhh--c-cccccccCC
Confidence            99999999999999999999999999999999999987543210        000000   000000  0 000001112


Q ss_pred             CCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCC
Q 013869          166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK  245 (435)
Q Consensus       166 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~  245 (435)
                      ....+++++++|||||||.||++.++|+++...+............+++++.+|++|..++...++.++..|+++++.+.
T Consensus       131 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~  210 (488)
T PRK09088        131 SIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNG  210 (488)
T ss_pred             CCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCC
Confidence            34568999999999999999999999999988888877777788999999999999999988778889999999999998


Q ss_pred             cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHH
Q 013869          246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWET  325 (435)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~  325 (435)
                      +++...+..+.+        .++++|++..+|.++..+.+...        .....++++|.+++||++++.+..+.+.+
T Consensus       211 ~~~~~~~~~~~~--------~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l~~~~~gG~~~~~~~~~~~~~  274 (488)
T PRK09088        211 FEPKRTLGRLGD--------PALGITHYFCVPQMAQAFRAQPG--------FDAAALRHLTALFTGGAPHAAEDILGWLD  274 (488)
T ss_pred             CCHHHHHHHHHh--------hccCCcEEeeHHHHHHHHHhCcC--------cCccccccceEEEecCCCCCHHHHHHHHH
Confidence            888888777532        24899999999999998876422        12234678999999999999999888886


Q ss_pred             HhCCcccccccCccccchhccCCC---CCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccccccCCchhc
Q 013869          326 ITGHRLLERYGMTEFVMAISNPLR---GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVT  401 (435)
Q Consensus       326 ~~~~~l~~~YG~tE~~~~~~~~~~---~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~  401 (435)
                      . ++++++.||+||++.+......   ...+.+++|.|.++++++|+|+++...+.+ .|||+++|+.++.||+++++.+
T Consensus       275 ~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~  353 (488)
T PRK09088        275 D-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQAT  353 (488)
T ss_pred             h-CCceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEECCCCCCCcCCCceEEEEECCccchhhcCChhhh
Confidence            5 8999999999999865432111   123567899999999999999888877666 7999999999999999999999


Q ss_pred             ccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          402 KDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       402 ~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +..++.+|||+|||+|+++++|.+++.||.+|+|
T Consensus       354 ~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i  387 (488)
T PRK09088        354 ARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMF  387 (488)
T ss_pred             hhhhcCCCCeeecceEEEcCCCcEEEeccccceE
Confidence            9888889999999999999999999999999986

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-53  Score=434.75  Aligned_cols=399  Identities=20%  Similarity=0.277  Sum_probs=312.1

Q ss_pred             HHHHHHhcccCCCeeEEEe------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCC
Q 013869            4 FKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (435)
Q Consensus         4 ~~~~~~~~~~~p~~~al~~------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~   77 (435)
                      +++|.++++.+|+++|++.      ..+.+||+||.++++++|++|++                 .|+++||+|+++++|
T Consensus        56 ~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~gd~V~i~~~n  118 (629)
T PRK10524         56 HNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRS-----------------LGVQRGDRVLIYMPM  118 (629)
T ss_pred             HHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCC
Confidence            5678888888999999996      23689999999999999999999                 499999999999999


Q ss_pred             CHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhh---------HHHHHHHHhcc---CCccccCCC
Q 013869           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKS---GAKFSLIPP  145 (435)
Q Consensus        78 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~---~~~~~~~~~  145 (435)
                      +++++++++||+++|++++|+++.++.+++.++++.++++++|+++..         .+.+..+....   ...+..+..
T Consensus       119 ~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~  198 (629)
T PRK10524        119 IAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDR  198 (629)
T ss_pred             CHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeC
Confidence            999999999999999999999999999999999999999999997642         23333332221   111221111


Q ss_pred             CC-CCCC----cccccc---c-h-hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHH-HHHHhccCCCCCee
Q 013869          146 VP-NVSS----ETTVFD---Q-S-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQF  214 (435)
Q Consensus       146 ~~-~~~~----~~~~~~---~-~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~~~~  214 (435)
                      .. ....    .....+   . . ...+.....++++++++|||||||.||+|.++|.+++.... .....+++.+++++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~  278 (629)
T PRK10524        199 GLAPMARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETF  278 (629)
T ss_pred             CCCCcCcccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEE
Confidence            00 0000    000000   0 0 00011124578999999999999999999999998754443 34445678899999


Q ss_pred             EEeecchhhhHHHHHHHHHHHcCCEEEEcCC----cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccc
Q 013869          215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM  290 (435)
Q Consensus       215 l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  290 (435)
                      ++..|++|..+....++.++..|+++++.+.    .++..+++.          ++++++|++.++|++++.+.+.... 
T Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~-  347 (629)
T PRK10524        279 FCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRI----------VEKYKVNRMFSAPTAIRVLKKQDPA-  347 (629)
T ss_pred             EEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHH----------HHHcCceEEEeCHHHHHHHHhcCcc-
Confidence            9999999998876679999999999998763    356667776          6679999999999999988764211 


Q ss_pred             cHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCC----CCCCCCccceecCCCeE
Q 013869          291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR----GARKAGTVGNPLPGVQV  366 (435)
Q Consensus       291 ~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~----~~~~~~~~G~p~~~~~~  366 (435)
                           .....+++++|.+++||+++++++.+.+.+.++.++++.||+||++..+.....    .....+++|+|++|+++
T Consensus       348 -----~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~  422 (629)
T PRK10524        348 -----LLRKHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNV  422 (629)
T ss_pred             -----cccccChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceE
Confidence                 112346789999999999999999999999999999999999999843322111    12346789999999999


Q ss_pred             EEecC-CCCCCCCc-cceEEEecC---CccccccCCchhcccccc---cCCccccCceEEEcCCccEEEecccccCC
Q 013869          367 KIAED-ESGSDAAG-VGEICVKSP---SLFKEYWKLPKVTKDSFT---ADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       367 ~i~d~-~~~~~~~~-~Gel~v~~~---~~~~gy~~~~~~~~~~~~---~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +|+|+ +++.++.+ .|||+++||   ..+.||+++++.+.+.+.   .++||+|||+|++|+||++++.||.||+|
T Consensus       423 ~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i  499 (629)
T PRK10524        423 KLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVI  499 (629)
T ss_pred             EEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeE
Confidence            99998 88877666 799999998   578899999877665542   36899999999999999999999999986

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.3e-53  Score=463.55  Aligned_cols=398  Identities=26%  Similarity=0.401  Sum_probs=326.3

Q ss_pred             hHHHHHHHhcccCCCeeEEEe-CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRA-DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~-~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      ++.+.|.++++++|+++|+++ .++++||+||.++++++|++|.+                  ++++||+|+++++|+++
T Consensus       616 ~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~------------------~~~~g~~V~i~~~n~~~  677 (1146)
T PRK08633        616 PLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKR------------------ELKDEENVGILLPPSVA  677 (1146)
T ss_pred             CHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH------------------hCCCCCeEEEECCCchH
Confidence            577889999999999999997 46899999999999999999987                  57999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHh--ccC--CccccCCCCC-CCCCcccc
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS--KSG--AKFSLIPPVP-NVSSETTV  155 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~--~~~~~~~~~~-~~~~~~~~  155 (435)
                      ++++++||+++|++++|+++..+.+++.++++++++++++++++..+.+.....  ...  ..+....... ........
T Consensus       678 ~~~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  757 (1146)
T PRK08633        678 GALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKL  757 (1146)
T ss_pred             HHHHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccchhHHH
Confidence            999999999999999999999999999999999999999999887766542110  011  1111111100 00000000


Q ss_pred             cc-------chh-hhh--ccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhH
Q 013869          156 FD-------QSQ-AEK--MDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG  225 (435)
Q Consensus       156 ~~-------~~~-~~~--~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  225 (435)
                      ..       +.. ...  .....++++++++|||||||.||+|.++|+++..+.......++..++|++++.+|++|..+
T Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g  837 (1146)
T PRK08633        758 TALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFG  837 (1146)
T ss_pred             HHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHh
Confidence            00       000 000  13456799999999999999999999999999999988888889999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEcC-CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccc
Q 013869          226 LFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ  304 (435)
Q Consensus       226 ~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~  304 (435)
                      +...++.++..|+++++.+ .+++...++.          ++++++|++.++|++++.+.+...        ....++++
T Consensus       838 ~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~  899 (1146)
T PRK08633        838 LTVTLWLPLLEGIKVVYHPDPTDALGIAKL----------VAKHRATILLGTPTFLRLYLRNKK--------LHPLMFAS  899 (1146)
T ss_pred             HHHHHHHHHHCCCEEEEeCCCCCHHHHHHH----------HHHcCCeEEEecHHHHHHHHhccc--------cCcccCCC
Confidence            9877899999999998876 4677888777          666999999999999999887422        22346789


Q ss_pred             cEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCC----------CCCCCCccceecCCCeEEEecC-CC
Q 013869          305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR----------GARKAGTVGNPLPGVQVKIAED-ES  373 (435)
Q Consensus       305 lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~----------~~~~~~~~G~p~~~~~~~i~d~-~~  373 (435)
                      +|.+++||+++++++.+.|++.++.++++.||+||++.+++....          ...+..++|+|.||++++|+|+ ++
T Consensus       900 lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~  979 (1146)
T PRK08633        900 LRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETF  979 (1146)
T ss_pred             eeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCC
Confidence            999999999999999999999999999999999999865542211          1134678999999999999995 46


Q ss_pred             CCCCCc-cceEEEecCCccccccCCchhccccccc---CCccccCceEEEcCCccEEEecccccCC
Q 013869          374 GSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTA---DGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       374 ~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~---~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +.++.+ .|||+++|+.++.||+++++.+++.+.+   +|||+|||+|++|+||++++.||.||+|
T Consensus       980 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i 1045 (1146)
T PRK08633        980 EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFA 1045 (1146)
T ss_pred             ccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchh
Confidence            666666 7999999999999999999999888743   3899999999999999999999999986

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=7.1e-54  Score=471.88  Aligned_cols=395  Identities=18%  Similarity=0.234  Sum_probs=315.0

Q ss_pred             hHHHHHHHhcccCCCeeEEEe---------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 013869            2 EVFKAAYKKGSMARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~   72 (435)
                      ++++.|.++++++|+++|++.         .++++||+||.++++++|++|.+.                 |+++|++|+
T Consensus       237 ~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-----------------gv~~g~~V~  299 (1389)
T TIGR03443       237 AIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKT-----------------GIKRGDVVM  299 (1389)
T ss_pred             cHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEE
Confidence            478899999999999999985         357899999999999999999994                 999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhH---HHHHHHHhccCC---cc--ccCC
Q 013869           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR---EVLQNVASKSGA---KF--SLIP  144 (435)
Q Consensus        73 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~~~---~~--~~~~  144 (435)
                      |+++|++++++++|||+++|++++|++|.++.+++.++++.+++++++++.+..   ..+.........   .+  ..+.
T Consensus       300 i~~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (1389)
T TIGR03443       300 IYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQ  379 (1389)
T ss_pred             EEecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEec
Confidence            999999999999999999999999999999999999999999999999876421   111111111000   00  0000


Q ss_pred             CCCCC-----CCc-cccccc----hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCee
Q 013869          145 PVPNV-----SSE-TTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF  214 (435)
Q Consensus       145 ~~~~~-----~~~-~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~  214 (435)
                      .....     ... ......    ..........++++++++|||||||.||||.++|+++.+.+.+....+++.+.+++
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~  459 (1389)
T TIGR03443       380 DDGSLVGGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKF  459 (1389)
T ss_pred             ccccccccccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEE
Confidence            00000     000 000000    00011123467899999999999999999999999999999988888999999999


Q ss_pred             EEeecchhhhHHHHHHHHHHHcCCEEEEcCCc---chhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhcccc
Q 013869          215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD  291 (435)
Q Consensus       215 l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  291 (435)
                      +...|++|..++. .++.+|..|+++++++..   ++..+++.          +.++++|++.++|+++..+...     
T Consensus       460 ~~~~~~~~d~~~~-~i~~~L~~G~~l~~~~~~~~~~~~~l~~~----------i~~~~vt~~~~~Ps~~~~l~~~-----  523 (1389)
T TIGR03443       460 TMLSGIAHDPIQR-DMFTPLFLGAQLLVPTADDIGTPGRLAEW----------MAKYGATVTHLTPAMGQLLSAQ-----  523 (1389)
T ss_pred             EEecCceecchHH-HHHHHHhCCCEEEEcChhhccCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHhc-----
Confidence            9999999998875 699999999999998764   34556665          6679999999999999988643     


Q ss_pred             HHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHh-CCcccccccCccccchhccCC--CC---------CCCCCccce
Q 013869          292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPL--RG---------ARKAGTVGN  359 (435)
Q Consensus       292 ~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~--~~---------~~~~~~~G~  359 (435)
                            ....++++|.+++||+++++.+.+++.+.+ +.++++.||+||++..++...  ..         .....++|+
T Consensus       524 ------~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  597 (1389)
T TIGR03443       524 ------ATTPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGK  597 (1389)
T ss_pred             ------ccccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCC
Confidence                  123478899999999999999999998876 789999999999976544211  00         113467899


Q ss_pred             ecCCCeEEEecCCC--CCCCCc-cceEEEecCCccccccCCchhcccccc----------------------------cC
Q 013869          360 PLPGVQVKIAEDES--GSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFT----------------------------AD  408 (435)
Q Consensus       360 p~~~~~~~i~d~~~--~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~----------------------------~~  408 (435)
                      |+++++++|+|+++  ..++.+ .|||+|+|++++.||+++|+.|.+.|.                            .+
T Consensus       598 ~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (1389)
T TIGR03443       598 GMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRD  677 (1389)
T ss_pred             ccCCCEEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCcc
Confidence            99999999999654  445555 799999999999999999999998873                            25


Q ss_pred             CccccCceEEEcCCccEEEecccccCC
Q 013869          409 GFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       409 g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +||+|||+|++++||+|+|+||.||+|
T Consensus       678 ~~y~TGDlg~~~~dG~l~~~GR~dd~I  704 (1389)
T TIGR03443       678 RLYRTGDLGRYLPDGNVECCGRADDQV  704 (1389)
T ss_pred             ceeecCCceeEcCCCCEEEecccCCEE
Confidence            799999999999999999999999986

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.2e-53  Score=416.85  Aligned_cols=364  Identities=35%  Similarity=0.576  Sum_probs=309.8

Q ss_pred             cccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHHHHHHHHHHH
Q 013869           11 GSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWF   90 (435)
Q Consensus        11 ~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~   90 (435)
                      +...++++|++.+++++||+||.++++++|..|++                      +|+|+++++|++++++++|||++
T Consensus        10 ~~~~~~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~----------------------~~~V~l~~~~~~~~~~~~la~~~   67 (471)
T PRK07787         10 AAAADIADAVRIGGRVLSRSDLAGAATAVAERVAG----------------------ARRVAVLATPTLATVLAVVGALI   67 (471)
T ss_pred             hcccCCceEEEeCCcEEEHHHHHHHHHHHHHHhcc----------------------CCEEEEECCCCHHHHHHHHHHHh
Confidence            34568999999999999999999999999999864                      69999999999999999999999


Q ss_pred             hCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhhhhccCCCCC
Q 013869           91 SGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGE  170 (435)
Q Consensus        91 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (435)
                      +|++++|+++..+.+++.++++++++++++++++...      ...+.    ........         .........++
T Consensus        68 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~------~~~~~----~~~~~~~~---------~~~~~~~~~~~  128 (471)
T PRK07787         68 AGVPVVPVPPDSGVAERRHILADSGAQAWLGPAPDDP------AGLPH----VPVRLHAR---------SWHRYPEPDPD  128 (471)
T ss_pred             cCcEEeecCCCCChHHHHHHHHhcCCCEEEecCCccc------ccccc----eeeecccc---------ccccCCCCCCC
Confidence            9999999999999999999999999999999874110      00000    00000000         00011224578


Q ss_pred             CcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcchhH
Q 013869          171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRG  250 (435)
Q Consensus       171 ~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~  250 (435)
                      ++++++|||||||.||+|.++|+++..++......+++...++++..+|++|..|+...++.++..|+++++.+.+++..
T Consensus       129 ~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~  208 (471)
T PRK07787        129 APALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEA  208 (471)
T ss_pred             ceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHH
Confidence            99999999999999999999999999998888888889999999999999999999888999999999999999999888


Q ss_pred             HHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCc
Q 013869          251 IWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHR  330 (435)
Q Consensus       251 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~  330 (435)
                      ++..          ++ +++|++.++|+++..+++...         ....++++|.++.||+++++++++.|.+.++.+
T Consensus       209 ~~~~----------i~-~~~t~~~~~P~~~~~l~~~~~---------~~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~  268 (471)
T PRK07787        209 YAQA----------LS-EGGTLYFGVPTVWSRIAADPE---------AARALRGARLLVSGSAALPVPVFDRLAALTGHR  268 (471)
T ss_pred             HHHH----------Hh-hCceEEEcchHHHHHHHhCcc---------ccccccceeEEEECCCCCCHHHHHHHHHHcCCC
Confidence            8887          67 899999999999999986421         123568899999999999999999999999999


Q ss_pred             ccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCC--Cc-cceEEEecCCccccccCCchhccccccc
Q 013869          331 LLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDA--AG-VGEICVKSPSLFKEYWKLPKVTKDSFTA  407 (435)
Q Consensus       331 l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~--~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~  407 (435)
                      +++.||+||++..++........+.++|+|+++++++|+|+++...+  ++ .|||+++|+.++.||+++++.+...|.+
T Consensus       269 ~~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~  348 (471)
T PRK07787        269 PVERYGMTETLITLSTRADGERRPGWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTA  348 (471)
T ss_pred             eecccCccccCcceecCCCCcccCCcccccCCCcEEEEECCCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccC
Confidence            99999999998655544333445678999999999999998887765  23 6999999999999999999999999988


Q ss_pred             CCccccCceEEEcCCccEEEeccc-ccCC
Q 013869          408 DGFFKTGDTGKQDEDGYYIILGRK-GIYF  435 (435)
Q Consensus       408 ~g~~~TGD~g~~~~dG~l~~~gR~-~d~i  435 (435)
                      +|||+|||+|++++||++++.||+ +|++
T Consensus       349 ~~~~~TGDlg~~~~dg~l~~~GR~~d~~i  377 (471)
T PRK07787        349 DGWFRTGDVAVVDPDGMHRIVGRESTDLI  377 (471)
T ss_pred             CCceecCceEEEcCCCCEEEeCCCCceeE
Confidence            999999999999999999999996 6653

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.3e-53  Score=423.38  Aligned_cols=396  Identities=27%  Similarity=0.408  Sum_probs=327.1

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      |+.++|.++++++|+++|+++.++.+||.||.+++++++..|.+.                 |+++|++|+++++|++++
T Consensus        13 ~~~~~~~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~-----------------gv~~~~~V~i~~~~~~~~   75 (524)
T PRK06188         13 TYGHLLVSALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEAL-----------------GLGTGDAVALLSLNRPEV   75 (524)
T ss_pred             cHHHHHHHHHHHCCCCeEEEECCCcccHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHHH
Confidence            688999999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechh-hHHHHHHHHhccCC--ccccCCCCCCCCCcc-cccc
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED-YREVLQNVASKSGA--KFSLIPPVPNVSSET-TVFD  157 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~  157 (435)
                      +++++||+++|++++|+++..+.+++.++++.++++.+++++. ....+.........  .+..+.......... ....
T Consensus        76 ~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (524)
T PRK06188         76 LMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDGVDLLAAAAK  155 (524)
T ss_pred             HHHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccchhhHHHhhhc
Confidence            9999999999999999999999999999999999999999986 33333332222211  111111110000000 0000


Q ss_pred             chhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcC
Q 013869          158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG  237 (435)
Q Consensus       158 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G  237 (435)
                      ...........++++++++|||||||.||+|.++|.++..........+++..+++++...|++|..++.  ++.++..|
T Consensus       156 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~--~~~~l~~G  233 (524)
T PRK06188        156 FGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF--FLPTLLRG  233 (524)
T ss_pred             cCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH--HHHHHHcC
Confidence            0000111123456699999999999999999999999999999888888999999999999999998863  67889999


Q ss_pred             CEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCH
Q 013869          238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (435)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~  317 (435)
                      +++++.+.+++..+++.          ++++++|++.++|+++..+++..+.        ....++++|.+++||+++++
T Consensus       234 ~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~l~~~~~~--------~~~~l~~lr~~~~gg~~~~~  295 (524)
T PRK06188        234 GTVIVLAKFDPAEVLRA----------IEEQRITATFLVPTMIYALLDHPDL--------RTRDLSSLETVYYGASPMSP  295 (524)
T ss_pred             CEEEEcCCCCHHHHHHH----------HHHhCCEEEEehHHHHHHHHhCcCc--------cCCCCcceeEEEEcCCCCCH
Confidence            99999999999998888          5669999999999999999876332        22357899999999999999


Q ss_pred             HHHHHHHHHhCCcccccccCccccchhccCCC------CCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCc
Q 013869          318 PVMQQWETITGHRLLERYGMTEFVMAISNPLR------GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSL  390 (435)
Q Consensus       318 ~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~------~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~  390 (435)
                      ++.+.|.+.++..+.+.||+||++..++....      ......++|+|+++++++|+|++++.++.+ .|||+++|+.+
T Consensus       296 ~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~Gel~v~~~~~  375 (524)
T PRK06188        296 VRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEVGEICVRGPLV  375 (524)
T ss_pred             HHHHHHHHHhCchhhheeCccccCCceeecCchhccccccccCCccccccCCcEEEEEcCCCCCCCCCCeeEEEEECcch
Confidence            99999999999999999999999755442211      123566899999999999999998887766 69999999999


Q ss_pred             cccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          391 FKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       391 ~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +.||++++..+...+ .+|||+|||+|++++||+++++||.+|+|
T Consensus       376 ~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~~~i  419 (524)
T PRK06188        376 MDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIVDRKKDMI  419 (524)
T ss_pred             hhhhcCChHHhhhhh-cCCceeecceEEEcCCccEEEEeccccce
Confidence            999999999988887 47999999999999999999999999875

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.7e-53  Score=423.73  Aligned_cols=399  Identities=27%  Similarity=0.378  Sum_probs=324.7

Q ss_pred             hHHHHHHHhcccCCCeeEEEe--CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCH
Q 013869            2 EVFKAAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~   79 (435)
                      ++.+.|.+.++++|+++|++.  .++.+||+||.++++++|.+|.+                 .|+++|++|+++++|++
T Consensus        19 ~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~-----------------~gi~~g~~V~i~~~~~~   81 (558)
T PRK12583         19 TIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLA-----------------LGVQPGDRVGIWAPNCA   81 (558)
T ss_pred             cHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCCh
Confidence            688999999999999999987  45789999999999999999998                 49999999999999999


Q ss_pred             HHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhH-----HHHHHHHhcc-------------CC--c
Q 013869           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKS-------------GA--K  139 (435)
Q Consensus        80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~-------------~~--~  139 (435)
                      ++++++|||+++|++++|+++.++.+++.+++++++++++++++...     ..+.......             +.  .
T Consensus        82 ~~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (558)
T PRK12583         82 EWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRG  161 (558)
T ss_pred             HHHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceE
Confidence            99999999999999999999999999999999999999999986432     2222211110             00  0


Q ss_pred             cccCCCCC--CCCCcccc---ccc----hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCC
Q 013869          140 FSLIPPVP--NVSSETTV---FDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS  210 (435)
Q Consensus       140 ~~~~~~~~--~~~~~~~~---~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~  210 (435)
                      ........  ........   ...    ..........++++++++|||||||.||+|.++|+++.+++......+++.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~  241 (558)
T PRK12583        162 VVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTE  241 (558)
T ss_pred             EEEecCCCCccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCC
Confidence            00000000  00000000   000    0001112345788999999999999999999999999999888888889999


Q ss_pred             CCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcC-CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhcc
Q 013869          211 ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA  289 (435)
Q Consensus       211 ~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  289 (435)
                      +++++...|++|..|....++.++..|++++++. .+++..++..          ++++++|++.++|+++..+++... 
T Consensus       242 ~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~----------i~~~~~t~l~~~P~~~~~l~~~~~-  310 (558)
T PRK12583        242 HDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQA----------VEEERCTALYGVPTMFIAELDHPQ-  310 (558)
T ss_pred             CCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHH----------HHHcCCeEEeccHHHHHHHHcccc-
Confidence            9999999999999999888999999999999754 5677777777          666999999999999988876422 


Q ss_pred             ccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCC-cccccccCccccchhccCCC---CCCCCCccceecCCCe
Q 013869          290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPLR---GARKAGTVGNPLPGVQ  365 (435)
Q Consensus       290 ~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~-~l~~~YG~tE~~~~~~~~~~---~~~~~~~~G~p~~~~~  365 (435)
                             ....+++++|.+++||+++++++.+.+.+.++. .+.+.||+||++.+++....   ......++|+|.+++.
T Consensus       311 -------~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~  383 (558)
T PRK12583        311 -------RGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLE  383 (558)
T ss_pred             -------ccCCCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCe
Confidence                   122357899999999999999999999998864 79999999999876653322   1234678999999999


Q ss_pred             EEEecCCCCCCCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          366 VKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       366 ~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++|+|+++..++.+ .|||+++|+.++.||+++++.+...|+.++||+|||+|++++||++++.||.+|+|
T Consensus       384 ~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i  454 (558)
T PRK12583        384 VKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMI  454 (558)
T ss_pred             EEEECCCCCCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECCCccEEEEeccccee
Confidence            99999888777666 79999999999999999999998888778999999999999999999999999985

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.1e-53  Score=423.05  Aligned_cols=397  Identities=22%  Similarity=0.355  Sum_probs=319.4

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      ||+.+.|.++++++|+++|++..++++||+||.++++++|..|.+.                 |+++|++|+++++|+++
T Consensus         7 ~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~-----------------g~~~g~~v~i~~~~~~~   69 (528)
T PRK07470          7 MNLAHFLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAAR-----------------GVRKGDRILVHSRNCNQ   69 (528)
T ss_pred             CCHHHHHHHHHHHCCCceEEEECCccccHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEEcCCCHH
Confidence            6788999999999999999999999999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC--ccccCCCCCCCCCccccccc
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSETTVFDQ  158 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  158 (435)
                      ++++++||+++|++++++++.++.+++.++++.++++.++++++..+.+.........  .+..+...............
T Consensus        70 ~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (528)
T PRK07470         70 MFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVAR  149 (528)
T ss_pred             HHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCcccccHHHHHhc
Confidence            9999999999999999999999999999999999999999999876655544322111  11111110000000000000


Q ss_pred             --hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhc--cCCCCCeeEEeecchhhhHHHHHHHHHH
Q 013869          159 --SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW--EYTSADQFLHCLPLHHVHGLFNALLAPL  234 (435)
Q Consensus       159 --~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~l~~~pl~~~~g~~~~~~~~l  234 (435)
                        ...........+++++++|||||||.||+|.++|+++...+.......  +....++++..+|++|..++. .++ .+
T Consensus       150 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~-~~  227 (528)
T PRK07470        150 HLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIH-QLC-QV  227 (528)
T ss_pred             CCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHH-HHH-HH
Confidence              000112245678999999999999999999999999876554433322  467789999999999999875 344 57


Q ss_pred             HcCCEEEEcC--CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecC
Q 013869          235 YAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (435)
Q Consensus       235 ~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G  312 (435)
                      ..|+++++.+  .+++..+++.          ++++++|++.++|++++.+.+..+.        ....++++|.+++||
T Consensus       228 ~~g~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~lr~~~~gG  289 (528)
T PRK07470        228 ARGAATVLLPSERFDPAEVWAL----------VERHRVTNLFTVPTILKMLVEHPAV--------DRYDHSSLRYVIYAG  289 (528)
T ss_pred             hcCceEEEecccCcCHHHHHHH----------HHhcCCeEEechHHHHHHHHhCcCc--------CCCCCcceEEEEEcC
Confidence            7787777665  4677787777          6679999999999999999875321        223578999999999


Q ss_pred             CCCCHHHHHHHHHHhCCcccccccCccccchhccCCC--------CCCCCCccceecCCCeEEEecCCCCCCCCc-cceE
Q 013869          313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR--------GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEI  383 (435)
Q Consensus       313 ~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~--------~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel  383 (435)
                      +++++.+.+.+.+.++.++++.||+||+++.++....        .....+++|+|.++++++++|++++.++.+ .|||
T Consensus       290 ~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel  369 (528)
T PRK07470        290 APMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGETGEI  369 (528)
T ss_pred             CCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECCCCCCCCCCCceEE
Confidence            9999999999999999999999999998765542211        122456889999999999999988887766 6999


Q ss_pred             EEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          384 CVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       384 ~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +++|+.++.||+++++.+...|. +|||+|||+|++++||+++++||.||+|
T Consensus       370 ~i~~~~~~~gy~~~~~~~~~~~~-~~~~~TGDl~~~~~~g~l~~~GR~dd~i  420 (528)
T PRK07470        370 CVIGPAVFAGYYNNPEANAKAFR-DGWFRTGDLGHLDARGFLYITGRASDMY  420 (528)
T ss_pred             EEeCCccchhhcCCHHHHHhhhc-CCcEecceeEEEccCCeEEEeCCccceE
Confidence            99999999999999999888774 7999999999999999999999999975

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.7e-53  Score=425.11  Aligned_cols=399  Identities=26%  Similarity=0.403  Sum_probs=321.4

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      ++.+.|.++++++|+++|+++.+..+||.||+++++++|.+|.+.                 |+++||+|+++++|++++
T Consensus        24 ~i~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~~a~~L~~~-----------------gi~~gd~V~i~~~n~~~~   86 (557)
T PRK07059         24 SLADLLEESFRQYADRPAFICMGKAITYGELDELSRALAAWLQSR-----------------GLAKGARVAIMMPNVLQY   86 (557)
T ss_pred             CHHHHHHHHHHHcCCCceEEEcCceeeHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEECCCCHHH
Confidence            688999999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCC-------------
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN-------------  148 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  148 (435)
                      +++++||+++|++++|+++..+.+++.++++.++++++++++.....+.............+.....             
T Consensus        87 ~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (557)
T PRK07059         87 PVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVV  166 (557)
T ss_pred             HHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEeccccccccccccccccc
Confidence            9999999999999999999999999999999999999999988776655543322111100000000             


Q ss_pred             -----------CCCccccc-----cchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhcc----C
Q 013869          149 -----------VSSETTVF-----DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE----Y  208 (435)
Q Consensus       149 -----------~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~----~  208 (435)
                                 ........     ............++++++++|||||||.||+|.++|.+++.++........    .
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~  246 (557)
T PRK07059        167 RRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEK  246 (557)
T ss_pred             ccccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccc
Confidence                       00000000     000011123456789999999999999999999999998876554332221    1


Q ss_pred             C---CCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCC-cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHH
Q 013869          209 T---SADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLI  284 (435)
Q Consensus       209 ~---~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  284 (435)
                      .   ....++..+|++|.+++....+.++..|++.++.+. .++..+++.          ++++++|.+.++|.++..++
T Consensus       247 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~~~~l~  316 (557)
T PRK07059        247 KPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKE----------LKKYQVHIFPAVNTLYNALL  316 (557)
T ss_pred             cCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHH----------HHHhCCeeeecCHHHHHHHH
Confidence            1   234678889999998876677788889988777664 466666666          66799999999999999998


Q ss_pred             hhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCC-CCCCCCccceecCC
Q 013869          285 QGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPG  363 (435)
Q Consensus       285 ~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~~~~~~G~p~~~  363 (435)
                      +....        ...+++++|.++.||++++..+.++|.+.+++++++.||+||++.+++.... ......++|.|+++
T Consensus       317 ~~~~~--------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g  388 (557)
T PRK07059        317 NNPDF--------DKLDFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPS  388 (557)
T ss_pred             cCcCc--------CcCCchhheEEEeccccCCHHHHHHHHHHhCCCeeeccccccccchhhcCCCCCCCcCCcccCccCC
Confidence            75321        2235678999999999999999999999999999999999999876553322 23346789999999


Q ss_pred             CeEEEecCCCCCCCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          364 VQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       364 ~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++++++|+++..++.+ .|||+++|+.++.||+++++.+...|..+|||+|||+|++++||++++.||++|+|
T Consensus       389 ~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i  461 (557)
T PRK07059        389 TEVSIRDDDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMI  461 (557)
T ss_pred             cEEEEECCCCCCCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccce
Confidence            9999999988887766 69999999999999999999999888889999999999999999999999999975

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=7.1e-53  Score=424.52  Aligned_cols=394  Identities=20%  Similarity=0.285  Sum_probs=305.5

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      |+.+.|.++++.+|+++|++..+.++||+||.++++++|..|.+                 +|+++||+|+|+++|++++
T Consensus        15 ~~~~~l~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~~a~~L~~-----------------~Gl~~gd~Vai~~~n~~e~   77 (579)
T PLN03102         15 TPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLIS-----------------LNITKNDVVSVLAPNTPAM   77 (579)
T ss_pred             cHHHHHHHHHHhCCCCeEEEECCcEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCcHHH
Confidence            56788999999999999999999999999999999999999999                 4999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccC-------CccccCCCCCCCCCc--
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-------AKFSLIPPVPNVSSE--  152 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--  152 (435)
                      ++++|||+++|++++|+++.++.+++.++++.++++++|++++..+.+........       ..+..+.........  
T Consensus        78 ~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (579)
T PLN03102         78 YEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSS  157 (579)
T ss_pred             HHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCcc
Confidence            99999999999999999999999999999999999999999888776665433221       111111111100000  


Q ss_pred             --cccccc---h-hh-----hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecch
Q 013869          153 --TTVFDQ---S-QA-----EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH  221 (435)
Q Consensus       153 --~~~~~~---~-~~-----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~  221 (435)
                        ....+.   . ..     .......++++++++|||||||.||+|.++|+++............+...++++..+|++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  237 (579)
T PLN03102        158 EELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMF  237 (579)
T ss_pred             cccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChh
Confidence              000000   0 00     001123568999999999999999999999999765544444445667778899999999


Q ss_pred             hhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhh
Q 013869          222 HVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA  301 (435)
Q Consensus       222 ~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  301 (435)
                      |..++.. .+.++..|+++++.+.+++..+++.          |+++++|++.++|+++..|++..+.        ....
T Consensus       238 h~~g~~~-~~~~~~~g~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~  298 (579)
T PLN03102        238 HCNGWTF-TWGTAARGGTSVCMRHVTAPEIYKN----------IEMHNVTHMCCVPTVFNILLKGNSL--------DLSP  298 (579)
T ss_pred             hhcchhH-HHHHHHhcCcEEeeccCChHHHHHH----------HHHcCCeEEEeChHHHHHHHhCccc--------ccCC
Confidence            9999864 6778899999999988888888887          6679999999999999999875321        1123


Q ss_pred             ccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccC-CCC-------------CCCCCccceecCCCeEE
Q 013869          302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP-LRG-------------ARKAGTVGNPLPGVQVK  367 (435)
Q Consensus       302 l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~-~~~-------------~~~~~~~G~p~~~~~~~  367 (435)
                      .++++.+++||++++..+.+.+.+ ++.++++.||+||+++.++.. ...             ....+..+.+++++  .
T Consensus       299 ~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v--~  375 (579)
T PLN03102        299 RSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADV--D  375 (579)
T ss_pred             cccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccce--E
Confidence            456788999999999999998876 589999999999987543321 100             01123334445444  4


Q ss_pred             EecCC-CCCCC--Cc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          368 IAEDE-SGSDA--AG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       368 i~d~~-~~~~~--~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +.|++ +..++  ++ .|||+++|+.++.||+++++.+.+.|. +|||+|||+|++|+||++++.||.+|+|
T Consensus       376 i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~-~gw~~TGDlg~~d~dG~l~i~GR~~d~i  446 (579)
T PLN03102        376 VKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFK-HGWLNTGDVGVIHPDGHVEIKDRSKDII  446 (579)
T ss_pred             EeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhc-cCceecCceEEEcCCCeEEEEeccCcEE
Confidence            45533 33333  22 699999999999999999999998885 7999999999999999999999999975

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-52  Score=421.37  Aligned_cols=397  Identities=21%  Similarity=0.299  Sum_probs=318.0

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +++.+.|.++++.+|+++|++.+++++||+||+++++++|+.|.+                 .|+++||+|+++++|+++
T Consensus        10 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~~L~~~~~~~a~~L~~-----------------~g~~~g~~V~i~~~n~~~   72 (540)
T PRK06164         10 DTLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAA-----------------QGVRRGDRVAVWLPNCIE   72 (540)
T ss_pred             CCHHHHHHHHHHhCCCCeEEecCCCcccHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEcCCcHH
Confidence            478999999999999999999999999999999999999999998                 499999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhH-----HHHHHHHhccC---CccccCC-CCCCCCC
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG---AKFSLIP-PVPNVSS  151 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~---~~~~~~~-~~~~~~~  151 (435)
                      ++++++||+++|++++|+++..+.+++.++++.++++.++++++..     +.+........   ..+..+. .......
T Consensus        73 ~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (540)
T PRK06164         73 WVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPA  152 (540)
T ss_pred             HHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCC
Confidence            9999999999999999999999999999999999999999987642     22222111100   0111111 0000000


Q ss_pred             cc-----c-cccchh----hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecch
Q 013869          152 ET-----T-VFDQSQ----AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH  221 (435)
Q Consensus       152 ~~-----~-~~~~~~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~  221 (435)
                      ..     . ......    .........+++++++|||||||.||+|.++|+++...+......+++.++++++..+|++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~  232 (540)
T PRK06164        153 PAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFC  232 (540)
T ss_pred             CCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCch
Confidence            00     0 000000    0001234568999999999999999999999999999999888889999999999999999


Q ss_pred             hhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhh
Q 013869          222 HVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA  301 (435)
Q Consensus       222 ~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  301 (435)
                      |..|+. .++.++..|+++++.+.+++..+++.          ++++++|++.++|+++..+.+.         ......
T Consensus       233 ~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~p~~l~~l~~~---------~~~~~~  292 (540)
T PRK06164        233 GVFGFS-TLLGALAGGAPLVCEPVFDAARTARA----------LRRHRVTHTFGNDEMLRRILDT---------AGERAD  292 (540)
T ss_pred             hHHHHH-HHHHHHhcCceEEecCCCCHHHHHHH----------HHHhCCeeecCCHHHHHHHHHh---------hcccCC
Confidence            999986 69999999999999999998888888          5669999999999999999875         122346


Q ss_pred             ccccEEEEecC-CCCCHHHHHHHHHHhCCcccccccCccccchhccCCCC---CCCCCccceec-CCCeEEEecC-CCCC
Q 013869          302 AKQLRLMMCGS-SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG---ARKAGTVGNPL-PGVQVKIAED-ESGS  375 (435)
Q Consensus       302 l~~lr~i~~~G-~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~---~~~~~~~G~p~-~~~~~~i~d~-~~~~  375 (435)
                      ++++|.+.++| .+...++.+.+.+. ++++++.||+||++.+++.....   .....+.|.|. ++++++|+|+ ++..
T Consensus       293 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~  371 (540)
T PRK06164        293 FPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGAL  371 (540)
T ss_pred             CcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcC
Confidence            78899887766 44555666665554 88999999999998655432211   12334567775 8999999994 4555


Q ss_pred             CCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          376 DAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       376 ~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      .+.+ .||||++|++++.||+++++.+...|+.+|||+|||+|++++||++++.||.+|+|
T Consensus       372 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i  432 (540)
T PRK06164        372 LPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSL  432 (540)
T ss_pred             CCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCCceEEEEeecCCeE
Confidence            6655 79999999999999999999999999889999999999999999999999999975

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-52  Score=418.27  Aligned_cols=384  Identities=22%  Similarity=0.303  Sum_probs=314.0

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +++.+.|.+++..+|+++|++++++.+||+||+++++++|.+|.+.                 |+++||+|+++++|+++
T Consensus        35 ~~~~~~~~~~a~~~p~~~a~~~~~~~lTy~el~~~~~~la~~L~~~-----------------gi~~g~~V~i~~~~~~~   97 (516)
T PRK13383         35 TNPYTLLAVTAARWPGRTAIIDDDGALSYRELQRATESLARRLTRD-----------------GVAPGRAVGVMCRNGRG   97 (516)
T ss_pred             CcHHHHHHHHHHHCCCCcEEEeCCCcEeHHHHHHHHHHHHHHHHhc-----------------CCCCCCEEEEECCCCHH
Confidence            4688899999999999999999999999999999999999999984                 99999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchh
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (435)
                      +++++|||+.+|++++|+++.++.+++.++++.++++.+++++++...+......    +..+... ..     ..... 
T Consensus        98 ~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~----~~~~~~~-~~-----~~~~~-  166 (516)
T PRK13383         98 FVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDA----VAVIDPA-TA-----GAEES-  166 (516)
T ss_pred             HHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhcc----eEEeccc-hh-----hhhcC-
Confidence            9999999999999999999999999999999999999999998877665443211    1111100 00     00000 


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHH--HHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCC
Q 013869          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSID--AQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA  238 (435)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~--~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~  238 (435)
                        ...+...++.++++|||||||.||+|.++|....  ..........++..+++++..+|++|.+++. .++.++..|+
T Consensus       167 --~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~-~~~~~l~~G~  243 (516)
T PRK13383        167 --GGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLG-MLMLTIALGG  243 (516)
T ss_pred             --CCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHH-HHHHHHhcCC
Confidence              0011234567899999999999999999987432  1222233455788899999999999999986 4788999999


Q ss_pred             EEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHH
Q 013869          239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (435)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~  318 (435)
                      ++++...+++..+++.          ++++++|.+.++|+++..+.+..+...      ....++++|.+++||++++++
T Consensus       244 ~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~------~~~~~~~lr~i~~gG~~l~~~  307 (516)
T PRK13383        244 TVLTHRHFDAEAALAQ----------ASLHRADAFTAVPVVLARILELPPRVR------ARNPLPQLRVVMSSGDRLDPT  307 (516)
T ss_pred             EEEECCCCCHHHHHHH----------HHHhCCcEEEecHHHHHHHHhcccccc------ccCCCCceEEEEECCCCCCHH
Confidence            9999999999888888          566899999999999999986533211      112468899999999999999


Q ss_pred             HHHHHHHHhCCcccccccCccccchhccCC-CCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccccccC
Q 013869          319 VMQQWETITGHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWK  396 (435)
Q Consensus       319 l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~-~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~  396 (435)
                      +++.|.+.++.++++.||+||++..+.... .......++|+|+++++++|+|++++..+.+ .|||+++|+.++.||++
T Consensus       308 ~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~Y~~  387 (516)
T PRK13383        308 LGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRVTGRIFVGGELAGTRYTD  387 (516)
T ss_pred             HHHHHHHHcCchhhhcccccccccceeccccccccCCCcccCCCCCcEEEEECCCCCCCCCCCceEEEEecCcccccccC
Confidence            999999999999999999999986554322 2234467899999999999999888877666 79999999999999998


Q ss_pred             CchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          397 LPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       397 ~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++..   .+ .+|||+|||+|++|++|++++.||.+|+|
T Consensus       388 ~~~~---~~-~~g~~~TGDl~~~d~~G~l~i~GR~~~~i  422 (516)
T PRK13383        388 GGGK---AV-VDGMTSTGDMGYLDNAGRLFIVGREDDMI  422 (516)
T ss_pred             Cchh---he-ecCceecceeEEEcCCccEEEeccccceE
Confidence            7532   22 47999999999999999999999999985

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=7.7e-53  Score=423.99  Aligned_cols=400  Identities=25%  Similarity=0.393  Sum_probs=321.9

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      ++.+.|.++++++|+++|++..++++||+||.++++++|+.|.+.                .|+++|++|+++++|++++
T Consensus        26 ~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~----------------~g~~~g~~V~i~~~~~~~~   89 (560)
T PRK08751         26 TVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGE----------------LQLKKGDRVALMMPNCLQY   89 (560)
T ss_pred             cHHHHHHHHHHhCCCCceEEECCceeeHHHHHHHHHHHHHHHHHH----------------hCCCCCCEEEEECCCCHHH
Confidence            577899999999999999999999999999999999999999732                4999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCC---------------
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPV---------------  146 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  146 (435)
                      ++++|||+++|++++|++|.++.+++.+++++++++++++++.....+.......+.........               
T Consensus        90 ~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (560)
T PRK08751         90 PIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFV  169 (560)
T ss_pred             HHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhh
Confidence            99999999999999999999999999999999999999999887766655443322111110000               


Q ss_pred             --------CCC--CCcccccc-----chhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhcc----
Q 013869          147 --------PNV--SSETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE----  207 (435)
Q Consensus       147 --------~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~----  207 (435)
                              ...  .......+     ...........++++++++|||||||.||+|.++|.++...+......+.    
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~  249 (560)
T PRK08751        170 VKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGK  249 (560)
T ss_pred             hhhhhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccc
Confidence                    000  00000000     00001122346789999999999999999999999999887776655543    


Q ss_pred             CCCC-CeeEEeecchhhhHHHHHHHHHHHcCCEEEEcC-CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHh
Q 013869          208 YTSA-DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ  285 (435)
Q Consensus       208 ~~~~-~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  285 (435)
                      +.++ ++++...|++|..++....+.++..|++.++.. .+++..++..          +.++++|++.++|.++..+++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~  319 (560)
T PRK08751        250 LEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKE----------LKKTRFTAFTGVNTLFNGLLN  319 (560)
T ss_pred             cCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHH----------HHhcceeEecChHHHHHHHHc
Confidence            3333 567788999999988666667777777766654 5677777777          677999999999999999987


Q ss_pred             hhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCC-CCCCCCCccceecCCC
Q 013869          286 GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGV  364 (435)
Q Consensus       286 ~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~-~~~~~~~~~G~p~~~~  364 (435)
                      ....        ...+++++|.+++||++++..+.+.|++.++.++++.||+||++..++... ......+++|.|.+++
T Consensus       320 ~~~~--------~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~  391 (560)
T PRK08751        320 TPGF--------DQIDFSSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPST  391 (560)
T ss_pred             CcCc--------CCcchhhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCceecccccccccCCCcCccCCCc
Confidence            4221        223567899999999999999999999999999999999999986655322 2234567899999999


Q ss_pred             eEEEecCCCCCCCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          365 QVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       365 ~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +++++|+++..++.+ .|||+++|+.++.||+++++.+...|+.+|||+|||+|+++++|+++++||.+|+|
T Consensus       392 ~v~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i  463 (560)
T PRK08751        392 DACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMI  463 (560)
T ss_pred             eEEEECCCCCCCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhhe
Confidence            999999988887666 79999999999999999999999888888999999999999999999999999986

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=5.8e-53  Score=420.96  Aligned_cols=381  Identities=22%  Similarity=0.340  Sum_probs=294.5

Q ss_pred             Ch-HHHHHHHhcccCCCeeEEEeCC----cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEe
Q 013869            1 ME-VFKAAYKKGSMARDSVAIRADQ----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (435)
Q Consensus         1 ~~-i~~~~~~~~~~~p~~~al~~~~----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~   75 (435)
                      || +.++|.++++++|+++|+++.+    +++||+||.++++++|++|.+                 .  ++||+|+|++
T Consensus         1 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~-----------------~--~~g~~V~l~~   61 (525)
T PRK05851          1 MNELAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLD-----------------R--DRPGAVGLVG   61 (525)
T ss_pred             CchHHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHh-----------------c--CCCCeEEEEc
Confidence            77 8899999999999999999876    789999999999999999988                 3  7899999999


Q ss_pred             CCCHHHHHHHHHHHHhCCeEEeCCCC-------CCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCC
Q 013869           76 KPSFEFVAGVLGTWFSGCIAVPLALS-------YPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN  148 (435)
Q Consensus        76 ~~~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (435)
                      +|++++++++|||+++|+++++++..       ...+++.++++.+++++++++.+..+.+......    +. +.....
T Consensus        62 ~~~~e~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~----~~-~~~~~~  136 (525)
T PRK05851         62 EPTVELVAAIQGAWLAGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS----VT-VHDLAT  136 (525)
T ss_pred             CCCHHHHHHHHHHHHcCCCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc----cc-cccccc
Confidence            99999999999999999986543211       1234556678999999999998776554432111    00 000000


Q ss_pred             CCCccccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCC-CCCeeEEeecchhhhHHH
Q 013869          149 VSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYT-SADQFLHCLPLHHVHGLF  227 (435)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~-~~~~~l~~~pl~~~~g~~  227 (435)
                      ..      ............++++++++|||||||.||+|.++|+++.+.+......+++. +.|++++.+|++|.+++.
T Consensus       137 ~~------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~  210 (525)
T PRK05851        137 AA------HTNRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLA  210 (525)
T ss_pred             cc------cccccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHH
Confidence            00      00000011224678999999999999999999999999999998888888888 899999999999999986


Q ss_pred             HHHHHHHHcCCEEEEcCC--c--chhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhcc
Q 013869          228 NALLAPLYAGATVEFMPK--F--SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK  303 (435)
Q Consensus       228 ~~~~~~l~~G~~~~~~~~--~--~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~  303 (435)
                       .++.++..|+++++.+.  +  ++..+++.          +.++++|++...|.++..+.+..+       .....+++
T Consensus       211 -~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~p~~~~~~l~~~~~-------~~~~~~l~  272 (525)
T PRK05851        211 -FLLTAALAGAPLWLAPTTAFSASPFRWLSW----------LSDSRATLTAAPNFAYNLIGKYAR-------RVSDVDLG  272 (525)
T ss_pred             -HHHHHHHcCCeEEEcCHHHHHHCHHHHHHH----------HHHhCCeEEeCCcHHHHHHHHhhc-------cccCCCHH
Confidence             58899999999999873  3  35566666          566899987554444444433211       11233578


Q ss_pred             ccEEEEecCCCCCHHHHHHHHHH---hCC---cccccccCccccchhccCCC---------------CCCCCCccceecC
Q 013869          304 QLRLMMCGSSALPLPVMQQWETI---TGH---RLLERYGMTEFVMAISNPLR---------------GARKAGTVGNPLP  362 (435)
Q Consensus       304 ~lr~i~~~G~~l~~~l~~~~~~~---~~~---~l~~~YG~tE~~~~~~~~~~---------------~~~~~~~~G~p~~  362 (435)
                      ++|.+++||+++++++.+.|.+.   ++.   ++++.||+||++..++....               ......++|+|++
T Consensus       273 ~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~  352 (525)
T PRK05851        273 ALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIP  352 (525)
T ss_pred             HhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCC
Confidence            89999999999999999999875   344   49999999999765543211               0123457999999


Q ss_pred             CCeEEEecCCCCC-CCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          363 GVQVKIAEDESGS-DAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       363 ~~~~~i~d~~~~~-~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |++++|+|+++.. ++.+ .|||+++|++++.||+++++.+     .+|||+|||+|+++ +|+++++||.||+|
T Consensus       353 g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i  421 (525)
T PRK05851        353 GMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID-----PDDWFPTGDLGYLV-DGGLVVCGRAKELI  421 (525)
T ss_pred             CcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccC-----CCCceeccceEEEE-CCEEEEEeecCCEE
Confidence            9999999977643 4555 7999999999999999988643     47899999999996 79999999999986

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=1.9e-52  Score=416.37  Aligned_cols=396  Identities=26%  Similarity=0.383  Sum_probs=323.4

Q ss_pred             HHHHHHh-cccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHHH
Q 013869            4 FKAAYKK-GSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV   82 (435)
Q Consensus         4 ~~~~~~~-~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~~   82 (435)
                      .+++.++ ++.+||++|++++++.+||.||.++++++|++|.+                 .|+++|++|+++++|+++++
T Consensus         7 ~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~-----------------~g~~~g~~v~l~~~~~~~~~   69 (508)
T TIGR02262         7 EDLLDRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRR-----------------LGVKREERVLLLMLDGVDFP   69 (508)
T ss_pred             HHHHHHHHhcccCCceEEEeCCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHHHH
Confidence            4556665 57799999999999999999999999999999998                 49999999999999999999


Q ss_pred             HHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCcccc----ccc
Q 013869           83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTV----FDQ  158 (435)
Q Consensus        83 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  158 (435)
                      +.++||+++|++++|+++.++.+++.++++.+++++++++++..+.+.+.....+.....+............    ...
T Consensus        70 ~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (508)
T TIGR02262        70 IAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAELLATE  149 (508)
T ss_pred             HHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCcccccHHHHhhcC
Confidence            9999999999999999999999999999999999999999988776665543322111111000000000000    000


Q ss_pred             hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHH-HHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcC
Q 013869          159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM-LTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG  237 (435)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G  237 (435)
                      ..........++++++++|||||||.||+|.++|+++...+.. ....+++..+++++..+|++|..++...++.++..|
T Consensus       150 ~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G  229 (508)
T TIGR02262       150 SEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVG  229 (508)
T ss_pred             CCccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcC
Confidence            0111123445789999999999999999999999999887765 345668899999999999999999877788899999


Q ss_pred             CEEEEcCC-cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCC
Q 013869          238 ATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALP  316 (435)
Q Consensus       238 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~  316 (435)
                      +++++.++ +++..++..          +.++++|.+.++|.++..+++...        ......+++|.++++|++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~~~~~~~--------~~~~~~~~l~~~~~~G~~l~  291 (508)
T TIGR02262       230 ATTVLMGERPTPDAVFDR----------LRRHQPTIFYGVPTLYAAMLADPN--------LPAEDQVRLRLCTSAGEALP  291 (508)
T ss_pred             ceEEEeCCCCCHHHHHHH----------HHHHCCcEEecchHHHHHHhcCcc--------ccccccccceeEEEcCCCCC
Confidence            99998764 577777777          566899999999999988876421        11223568999999999999


Q ss_pred             HHHHHHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCcccccc
Q 013869          317 LPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYW  395 (435)
Q Consensus       317 ~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~  395 (435)
                      +++.+.|.+.++.++++.||+||++.+++..........++|+|+++++++++|+++..++.+ .|||+++|+.++.||+
T Consensus       292 ~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~~Gel~i~~~~~~~gY~  371 (508)
T TIGR02262       292 AEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGYRLRLVGDGGQDVAAGEPGELLISGPSSATMYW  371 (508)
T ss_pred             HHHHHHHHHHhCCchhhCccccccCceeecCCccCCCCCCcCCCCCCcEEEEECCCCCCCCCCCeeEEEEecCccccccC
Confidence            999999999999999999999999876554333334566899999999999999888777666 7999999999999999


Q ss_pred             CCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          396 KLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       396 ~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++++.+...|. ++||+|||++++++||.++++||.+|+|
T Consensus       372 ~~~~~~~~~~~-~~~~~TGD~~~~~~~g~~~~~gR~~d~i  410 (508)
T TIGR02262       372 NNRAKTRDTFQ-GEWTRSGDKYVRNDDGSYTYAGRTDDML  410 (508)
T ss_pred             CCHHHhHhhhh-cCceeccceEEEcCCccEEEecccccee
Confidence            99999988884 7999999999999999999999999986

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.8e-52  Score=418.60  Aligned_cols=388  Identities=19%  Similarity=0.318  Sum_probs=311.9

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccC-CCCCeEEEEeCCCHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIVAKPSFE   80 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~-~~g~~V~i~~~~~~~   80 (435)
                      |+.++|.+++  .|+++|+++.+.++||+||.++++++|..|.+.                 |+ ++||+|+++++|+++
T Consensus         4 ~~~~~l~~~~--~p~~~Al~~~~~~lTy~el~~~~~~la~~L~~~-----------------g~~~~~~~V~i~~~n~~~   64 (540)
T PRK13388          4 TIAQLLRDRA--GDDTIAVRYGDRTWTWREVLAEAAARAAALIAL-----------------ADPDRPLHVGVLLGNTPE   64 (540)
T ss_pred             hHHHHHHhhc--cCCceEEEECCceeeHHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEECCCCcH
Confidence            5677887765  599999999999999999999999999999994                 89 799999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchh
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (435)
                      ++++++||+++|++++|++|.++.+++.++++.+++++++++++..+.+..... ....+..+... ...  ........
T Consensus        65 ~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~i~~~~~-~~~--~~~~~~~~  140 (540)
T PRK13388         65 MLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDL-PGVRVLDVDTP-AYA--ELVAAAGA  140 (540)
T ss_pred             HHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhcc-cCceEEEccch-hhh--hhhccccC
Confidence            999999999999999999999999999999999999999999887765544311 01111111100 000  00000000


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEE
Q 013869          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (435)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~  240 (435)
                      ..+.....++++++++|||||||.||+|.++|+++..........+++..+|+++..+|++|..+++..++.++..|+++
T Consensus       141 ~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~  220 (540)
T PRK13388        141 LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAV  220 (540)
T ss_pred             cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEE
Confidence            11112356799999999999999999999999999988888888889999999999999999998876566789999999


Q ss_pred             EEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHH
Q 013869          241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM  320 (435)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~  320 (435)
                      ++.+.+++..+++.          ++++++|++..+|..+..++...+..        ....++++.+ + |+.++++..
T Consensus       221 v~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~l~~l~~~~~~~--------~~~~~~l~~~-~-G~~~~~~~~  280 (540)
T PRK13388        221 ALPAKFSASGFLDD----------VRRYGATYFNYVGKPLAYILATPERP--------DDADNPLRVA-F-GNEASPRDI  280 (540)
T ss_pred             EECCCCCHHHHHHH----------HHHhCCeEEEehHHHHHHHHhCCCCc--------cccccceEEE-E-CCCCCHHHH
Confidence            99988888888888          66699999999999999888653211        1122456643 3 667788888


Q ss_pred             HHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEE-----------EecCCCCCCC-C-ccceEEEe-
Q 013869          321 QQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVK-----------IAEDESGSDA-A-GVGEICVK-  386 (435)
Q Consensus       321 ~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~-----------i~d~~~~~~~-~-~~Gel~v~-  386 (435)
                      +.|.+.++.++++.||+||++.+++...  ....+++|+|++|+++.           ++|++|+... + ..|||+++ 
T Consensus       281 ~~~~~~~~~~l~~~YG~tE~~~~~~~~~--~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~~  358 (540)
T PRK13388        281 AEFSRRFGCQVEDGYGSSEGAVIVVREP--GTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEAIGELVNTA  358 (540)
T ss_pred             HHHHHHhCCceecccccccccceeecCC--CCCCCCCCCCCCCcEEEcCCCCccccceeccCccccccCCCcceEEEEec
Confidence            9999999999999999999987665432  23467899999998753           4455555542 2 37999998 


Q ss_pred             cCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          387 SPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       387 ~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |+.++.||+++++.+.+.| .+|||+|||+|++|+||++++.||++|+|
T Consensus       359 g~~~~~gY~~~~~~t~~~~-~~g~~~TGD~~~~~~dg~l~i~GR~~d~i  406 (540)
T PRK13388        359 GAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWM  406 (540)
T ss_pred             CCcccccccCChHHHHHHh-hcCceeccceEEEcCCCcEEEeccCCceE
Confidence            9999999999999998888 47999999999999999999999999975

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-52  Score=428.58  Aligned_cols=397  Identities=19%  Similarity=0.227  Sum_probs=305.9

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCC-----cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeC
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQ-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~-----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~   76 (435)
                      |+.+++.++  .+|+++|++..+     +++||+||.+++.++|+.|++                 .|+++||+|+++++
T Consensus        87 n~~~~~~~~--~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~gd~V~i~~~  147 (655)
T PRK03584         87 NYAENLLRH--RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRA-----------------LGVGPGDRVAAYLP  147 (655)
T ss_pred             eHHHHhhcc--CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence            444555443  579999999743     689999999999999999999                 49999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhh---------HHHHHHHHhccCC--ccccCCC
Q 013869           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSGA--KFSLIPP  145 (435)
Q Consensus        77 ~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~--~~~~~~~  145 (435)
                      |++++++++|||+++|++++|+++.++.+++.++++.++++++|+++..         .+.+.......+.  .+..+..
T Consensus       148 n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  227 (655)
T PRK03584        148 NIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPY  227 (655)
T ss_pred             CCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEec
Confidence            9999999999999999999999999999999999999999999998753         2233333222221  1111111


Q ss_pred             CCC------C---CCcccccc--chhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHH-HHHHHHHhccCCCCCe
Q 013869          146 VPN------V---SSETTVFD--QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA-QVQMLTEAWEYTSADQ  213 (435)
Q Consensus       146 ~~~------~---~~~~~~~~--~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~-~~~~~~~~~~~~~~~~  213 (435)
                      ...      .   ........  ............+++++|+|||||||.||||.++|.+++. ........+++.++|+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~  307 (655)
T PRK03584        228 LGPAAAAAALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDR  307 (655)
T ss_pred             CCCcccccccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCE
Confidence            100      0   00000000  0001112345678999999999999999999999998754 4555566778899999


Q ss_pred             eEEeecchhhhHHHHHHHHHHHcCCEEEEcCC----cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhcc
Q 013869          214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA  289 (435)
Q Consensus       214 ~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  289 (435)
                      +++..++.|..+.  .+++++..|+++++.+.    +++..+++.          ++++++|++..+|++++.+.+....
T Consensus       308 ~~~~~~~~~~~~~--~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~  375 (655)
T PRK03584        308 FFWYTTCGWMMWN--WLVSGLLVGATLVLYDGSPFYPDPNVLWDL----------AAEEGVTVFGTSAKYLDACEKAGLV  375 (655)
T ss_pred             EEEcCCchHHhHH--HHHHHHHcCCEEEEeCCCCCCCCHHHHHHH----------HHHHCCEEEEcCHHHHHHHHhcCCC
Confidence            9999999887653  37789999999999763    466777777          6679999999999999988753110


Q ss_pred             ccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHh--CCcccccccCccccchhc-cCCCCCCCCCccceecCCCeE
Q 013869          290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT--GHRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQV  366 (435)
Q Consensus       290 ~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~--~~~l~~~YG~tE~~~~~~-~~~~~~~~~~~~G~p~~~~~~  366 (435)
                            .....++++||.++++|+++++++.+.|.+.+  ++.+.+.||+||++.... .........+++|.|.+|+++
T Consensus       376 ------~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~  449 (655)
T PRK03584        376 ------PGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAV  449 (655)
T ss_pred             ------ccccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCcee
Confidence                  11234678999999999999999999999988  478999999999854332 222223456789999999999


Q ss_pred             EEecCCCCCCCCccceEEEecC--CccccccCCchhcc--cccc--cCCccccCceEEEcCCccEEEecccccCC
Q 013869          367 KIAEDESGSDAAGVGEICVKSP--SLFKEYWKLPKVTK--DSFT--ADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       367 ~i~d~~~~~~~~~~Gel~v~~~--~~~~gy~~~~~~~~--~~~~--~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +|+|+++...++..|||+++|+  +++.||+++++.++  +.+.  -+|||+|||+|++|+||+++++||.||+|
T Consensus       450 ~ivd~~g~~~~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~I  524 (655)
T PRK03584        450 EAWDEDGRPVVGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATL  524 (655)
T ss_pred             EEECCCCCCCCCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCee
Confidence            9999999888555899999996  78999999987543  2221  15789999999999999999999999986

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.8e-52  Score=419.40  Aligned_cols=399  Identities=24%  Similarity=0.354  Sum_probs=321.4

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +++.+.|.++++.+|+++|+...++++||.||.+++.++|.+|.+.                 |+++|++|+++++|+++
T Consensus        33 ~~l~~~l~~~a~~~p~~~al~~~~~~~Ty~~l~~~~~~la~~L~~~-----------------g~~~g~~V~i~~~n~~~   95 (567)
T PRK06178         33 RPLTEYLRAWARERPQRPAIIFYGHVITYAELDELSDRFAALLRQR-----------------GVGAGDRVAVFLPNCPQ   95 (567)
T ss_pred             ccHHHHHHHHHHHCCCceEEEECCceeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCcH
Confidence            3688999999999999999999999999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCC-CC--------
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV-SS--------  151 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------  151 (435)
                      ++++++||+++|++++|++|..+..++.+++++++++++++++...+.+.............+...... ..        
T Consensus        96 ~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  175 (567)
T PRK06178         96 FHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPD  175 (567)
T ss_pred             HHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEecccccccccccccccc
Confidence            999999999999999999999999999999999999999999988777665543322111111000000 00        


Q ss_pred             -----------ccccccc----hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHH-hccCCCCCeeE
Q 013869          152 -----------ETTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE-AWEYTSADQFL  215 (435)
Q Consensus       152 -----------~~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~~~~l  215 (435)
                                 .......    ...........+++++++|||||||.||+|.+||+++......... ...+...++++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l  255 (567)
T PRK06178        176 SLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFL  255 (567)
T ss_pred             ccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEE
Confidence                       0000000    0001122356789999999999999999999999998876655443 35678899999


Q ss_pred             EeecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHH
Q 013869          216 HCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQ  295 (435)
Q Consensus       216 ~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  295 (435)
                      .++|++|..|+...++.++..|+++++.+++++..++..          ++++++|.+.++|..+..+.+....      
T Consensus       256 ~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~----------i~~~~~t~~~~~~~~~~~l~~~~~~------  319 (567)
T PRK06178        256 SFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAA----------VERYRVTRTVMLVDNAVELMDHPRF------  319 (567)
T ss_pred             EecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHH----------HHHhCCeEEeccHHHHHHHHhCCCC------
Confidence            999999999987678899999999999999999988888          5668999999999999888764221      


Q ss_pred             HHhhhhccccEEEEe--cCCCCCHHHHHHHHHHhCCcccc-cccCccccchhccCC--C-----CCCCCCccceecCCCe
Q 013869          296 AASASAAKQLRLMMC--GSSALPLPVMQQWETITGHRLLE-RYGMTEFVMAISNPL--R-----GARKAGTVGNPLPGVQ  365 (435)
Q Consensus       296 ~~~~~~l~~lr~i~~--~G~~l~~~l~~~~~~~~~~~l~~-~YG~tE~~~~~~~~~--~-----~~~~~~~~G~p~~~~~  365 (435)
                        ...++++++.+..  .++.+++++.+.|++.++..++. .||+||++..+....  .     ....+.++|+|++|++
T Consensus       320 --~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~  397 (567)
T PRK06178        320 --AEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTE  397 (567)
T ss_pred             --CCCCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcE
Confidence              1234567777654  45899999999999999877665 799999875433211  1     1234567999999999


Q ss_pred             EEEec-CCCCCCCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          366 VKIAE-DESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       366 ~~i~d-~~~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++++| +++..++.+ .|||+++|++++.||+++++.+...|. +|||+|||+|++++||+++++||++|+|
T Consensus       398 v~v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~-dg~~~TGDl~~~~~~g~l~i~GR~~d~i  468 (567)
T PRK06178        398 FKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALR-DGWLHTGDIGKIDEQGFLHYLGRRKEML  468 (567)
T ss_pred             EEEEcCCCCCcCCCCCceEEEEECCcccccccCChhhhhhccc-CCceeecceEEEecCCeEEEEecccccE
Confidence            99999 556666666 799999999999999999999988874 7899999999999999999999999986

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=1.7e-52  Score=416.39  Aligned_cols=386  Identities=18%  Similarity=0.291  Sum_probs=318.5

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      ++.+.|.++++.+|+++|+...++++||+||.+++.++|.+|.+.                 |+++|++|+++++|++++
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~-----------------g~~~~~~V~i~~~~~~~~   63 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKR-----------------ILPKKSPIIVYGHMEPHM   63 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcCCcEEeHHHHHHHHHHHHHHHHHh-----------------CCCCCCeEEEEeCCCHHH
Confidence            578999999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhh
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (435)
                      ++++|||+++|++++|+++.++.+++.++++..+++.++++++.......      ..+..+......     .......
T Consensus        64 ~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~  132 (502)
T TIGR01734        64 LVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG------TQIITLSALEQA-----ETSGGPV  132 (502)
T ss_pred             HHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC------CceEEchHhhhh-----hhhcCCc
Confidence            99999999999999999999999999999999999999998865432211      011111000000     0000001


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEE
Q 013869          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (435)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~  241 (435)
                      .......+++.++++|||||||.||+|.++|+++...+.+....+++...++++...|++|..++. .++.++..|++++
T Consensus       133 ~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~~  211 (502)
T TIGR01734       133 SFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVM-DLYPCLASGGTLH  211 (502)
T ss_pred             cccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHH-HHHHHHHCCCEEE
Confidence            112234678999999999999999999999999999998888888889999999999999999886 5899999999999


Q ss_pred             EcCCc---chhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHH
Q 013869          242 FMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (435)
Q Consensus       242 ~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~  318 (435)
                      +.++.   ++..+++.          +.+++++.+.++|+++..++....        .....+++++.++++|++++.+
T Consensus       212 ~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~p~~~~~~l~~~~--------~~~~~~~~l~~~~~~G~~~~~~  273 (502)
T TIGR01734       212 CLDKDITNNFKLLFEE----------LPKTGLNVWVSTPSFVDMCLLDPN--------FNQENYPHLTHFLFCGEELPVK  273 (502)
T ss_pred             EcCHHHhcCHHHHHHH----------HHHcCCeEEEEChhHHHHHHhccc--------cccccCCcccEEEEcCCcCCHH
Confidence            98864   45555555          666999999999999987765321        1234578999999999999999


Q ss_pred             HHHHHHHHh-CCcccccccCccccchhccC-----CCCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCcc
Q 013869          319 VMQQWETIT-GHRLLERYGMTEFVMAISNP-----LRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLF  391 (435)
Q Consensus       319 l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~-----~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~  391 (435)
                      +.+.+.+.+ ++++++.||+||++..++..     ........++|.|.++++++|+|+++...+.+ .|||+++|+.++
T Consensus       274 ~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~  353 (502)
T TIGR01734       274 TAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGEKGEIVIVGPSVS  353 (502)
T ss_pred             HHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCCCCCCCCCCeeEEEEcccccc
Confidence            999999988 78999999999987543321     11223446799999999999999988887766 799999999999


Q ss_pred             ccccCCchhccccc---ccCCccccCceEEEcCCccEEEecccccCC
Q 013869          392 KEYWKLPKVTKDSF---TADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       392 ~gy~~~~~~~~~~~---~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      .||+++++.+...|   ++.+||+|||+|++|++ ++++.||.+|+|
T Consensus       354 ~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i  399 (502)
T TIGR01734       354 KGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDFQI  399 (502)
T ss_pred             ccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccCeE
Confidence            99999999888776   23469999999999876 999999999976

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=6.3e-53  Score=500.27  Aligned_cols=388  Identities=21%  Similarity=0.341  Sum_probs=328.2

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      +++++|.++++++|+++|++..++++||+||.++++++|+.|.+.                 |+++|++|+++++|++++
T Consensus       512 ~~~~~~~~~a~~~p~~~A~~~~~~~~TY~eL~~~~~~lA~~L~~~-----------------gv~~g~~V~l~~~~s~~~  574 (5163)
T PRK12316        512 GVHRLFEEQVERTPEAPALAFGEETLDYAELNRRANRLAHALIER-----------------GVGPDVLVGVAMERSIEM  574 (5163)
T ss_pred             CHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence            588999999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhh
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (435)
                      +++++||+++|++++|++|.++.+++.++++.+++++++++.+....+...   ....+..+.....   .  .......
T Consensus       575 i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~---~--~~~~~~~  646 (5163)
T PRK12316        575 VVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLA---AGVQVLDLDRPAA---W--LEGYSEE  646 (5163)
T ss_pred             HHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcc---cCceEEEecCcch---h--hccCCCC
Confidence            999999999999999999999999999999999999999998765432110   0011111110000   0  0011111


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEE
Q 013869          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (435)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~  241 (435)
                      .+.....++++++++|||||||.||||.++|+++.+.+.+....+++.++++++...|++|..+++ .++.+|..|++++
T Consensus       647 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~-~~~~~L~~G~~l~  725 (5163)
T PRK12316        647 NPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVW-EFFWPLMSGARLV  725 (5163)
T ss_pred             CCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHH-HHHHHHhCCCEEE
Confidence            122345678999999999999999999999999999999999999999999999999999999986 6999999999999


Q ss_pred             EcCC---cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHH
Q 013869          242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (435)
Q Consensus       242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~  318 (435)
                      +.+.   +++..+++.          +.++++|++.++|++++.|++..          ....++++|.+++||++++++
T Consensus       726 i~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~~~~l~~~~----------~~~~~~~l~~~~~gGe~l~~~  785 (5163)
T PRK12316        726 VAAPGDHRDPAKLVEL----------INREGVDTLHFVPSMLQAFLQDE----------DVASCTSLRRIVCSGEALPAD  785 (5163)
T ss_pred             ECCccccCCHHHHHHH----------HHHcCCeEEEeCHHHHHHHHhcc----------ccccCCCccEEEEeeccCCHH
Confidence            9864   677777777          66699999999999999997631          123578899999999999999


Q ss_pred             HHHHHHHHh-CCcccccccCccccchhcc--CCCCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccccc
Q 013869          319 VMQQWETIT-GHRLLERYGMTEFVMAISN--PLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEY  394 (435)
Q Consensus       319 l~~~~~~~~-~~~l~~~YG~tE~~~~~~~--~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy  394 (435)
                      +.+.|.+.+ +.+++|.||+||++..++.  .........++|+|++|++++|+|++++.++.+ .|||+|+|++++.||
T Consensus       786 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY  865 (5163)
T PRK12316        786 AQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPVPVGVLGELYLAGRGLARGY  865 (5163)
T ss_pred             HHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEECCCCCCCCCCCceEEEecccccChhh
Confidence            999998876 6899999999999854332  122234567899999999999999999888877 799999999999999


Q ss_pred             cCCchhcccccc------cCCccccCceEEEcCCccEEEecccccCC
Q 013869          395 WKLPKVTKDSFT------ADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       395 ~~~~~~~~~~~~------~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +++|+.|++.|.      +++||+|||+|++++||.|+|+||+||+|
T Consensus       866 l~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~i  912 (5163)
T PRK12316        866 HGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQV  912 (5163)
T ss_pred             CCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEE
Confidence            999999999884      34699999999999999999999999986

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=5.9e-53  Score=500.52  Aligned_cols=388  Identities=24%  Similarity=0.319  Sum_probs=326.0

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      ++++.|.++++++|+++|+++.++++||+||+++++++|..|.++                 |+++|++|+|+++|++++
T Consensus      2004 ~~~~~~~~~a~~~p~~~A~~~~~~~lTy~eL~~~a~~lA~~L~~~-----------------gv~~g~~V~l~~~~s~~~ 2066 (5163)
T PRK12316       2004 GVHQRIAEQAARAPEAIAVVFGDQHLSYAELDSRANRLAHRLRAR-----------------GVGPEVRVAIAAERSFEL 2066 (5163)
T ss_pred             CHHHHHHHHHHhCCCCeEEEcCCCeEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence            588999999999999999999999999999999999999999995                 999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhh
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (435)
                      ++++|||+++|+++||++|.++.+++.++++.+++++++++++....+....   ......+...      .........
T Consensus      2067 ~~~~lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~~ 2137 (5163)
T PRK12316       2067 VVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPA---GVARLPLDRD------AEWADYPDT 2137 (5163)
T ss_pred             HHHHHHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhccccc---ccceEeccch------hhhhccCcc
Confidence            9999999999999999999999999999999999999999987654432100   0001111000      000011111


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEE
Q 013869          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (435)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~  241 (435)
                      .+.....+++++|++|||||||.||||.++|+++.+.+......+++.+.++++...|++|..+++ .++.+|..|++++
T Consensus      2138 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~~~ 2216 (5163)
T PRK12316       2138 APAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHE-QWFHPLLNGARVL 2216 (5163)
T ss_pred             CCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHHH-HHHHHHhCCCEEE
Confidence            122345789999999999999999999999999999999999999999999999999999988875 6999999999998


Q ss_pred             EcCC--cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHH
Q 013869          242 FMPK--FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (435)
Q Consensus       242 ~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l  319 (435)
                      +.+.  +++..++..          +.++++|++.++|+++..+.+...         .....+++|.+++||+++++++
T Consensus      2217 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~---------~~~~~~~lr~~~~gGe~l~~~~ 2277 (5163)
T PRK12316       2217 IRDDELWDPEQLYDE----------MERHGVTILDFPPVYLQQLAEHAE---------RDGRPPAVRVYCFGGEAVPAAS 2277 (5163)
T ss_pred             eCCcccCCHHHHHHH----------HHHcCCeEEEcChHHHHHHHhhhh---------cccCCcceeEEEEecccCCHHH
Confidence            8764  567777777          666999999999999999976422         1123358999999999999999


Q ss_pred             HHHHHHHh-CCcccccccCccccchhccCCC--CC---CCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccc
Q 013869          320 MQQWETIT-GHRLLERYGMTEFVMAISNPLR--GA---RKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFK  392 (435)
Q Consensus       320 ~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~--~~---~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~  392 (435)
                      .++|.+.+ +.++++.||+||++..++....  ..   ....++|+|++|++++|+|++++.++.+ .|||+|+|+++++
T Consensus      2278 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~g~~GEl~i~G~~v~~ 2357 (5163)
T PRK12316       2278 LRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLLAPGMAGELYLGGEGLAR 2357 (5163)
T ss_pred             HHHHHHhCCCcEEEECccchhheeeeeeeecccccccCCCcCCcccccCCCEEEEECCCCCCCCCCCeeEEEecchhhcc
Confidence            99999877 5789999999999865542211  11   1235799999999999999999888887 7999999999999


Q ss_pred             cccCCchhccccccc-------CCccccCceEEEcCCccEEEecccccCC
Q 013869          393 EYWKLPKVTKDSFTA-------DGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       393 gy~~~~~~~~~~~~~-------~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ||+++|+.|.++|..       ++||+|||+|++++||.|+++||+||+|
T Consensus      2358 GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~i 2407 (5163)
T PRK12316       2358 GYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQV 2407 (5163)
T ss_pred             cccCChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeE
Confidence            999999999999843       4699999999999999999999999986

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=9.5e-53  Score=491.67  Aligned_cols=388  Identities=24%  Similarity=0.384  Sum_probs=326.2

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      +++++|.++++++||++|+++.++++||+||.++++++|++|.+.                 |+++|++|+|++++++++
T Consensus       513 ~~~~~~~~~a~~~pd~~Al~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------Gv~~g~~V~i~~~~s~~~  575 (3956)
T PRK12467        513 CVHQLIEAQARQHPERPALVFGEQVLSYAELNRQANRLAHVLIAA-----------------GVGPDVLVGIAVERSIEM  575 (3956)
T ss_pred             CHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence            578999999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhh
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (435)
                      +++++||+++|++++|+++.++.+++.++++++++++++++++....+..   ........+.....     ........
T Consensus       576 vv~~lail~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~  647 (3956)
T PRK12467        576 VVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLPV---PAGLRSLCLDEPAD-----LLCGYSGH  647 (3956)
T ss_pred             HHHHHHHHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhccc---ccCccEEEeccccc-----cccccCCC
Confidence            99999999999999999999999999999999999999999865433211   00011111110000     00001111


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEE
Q 013869          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (435)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~  241 (435)
                      .+.....++++++++|||||||.||||.++|+++.+.+.+....+++.++++++...|++|..+++ .++.++..|++++
T Consensus       648 ~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~lv  726 (3956)
T PRK12467        648 NPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVT-ELFGALASGATLH  726 (3956)
T ss_pred             CCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhHHHH-HHHHHHhCCCEEE
Confidence            112345689999999999999999999999999999999999999999999999999999999986 6999999999999


Q ss_pred             EcCC---cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHH
Q 013869          242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (435)
Q Consensus       242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~  318 (435)
                      +.+.   +++..+++.          |.++++|++.++|+++..+++...          ....+++|.+++||++++++
T Consensus       727 ~~~~~~~~~~~~l~~~----------i~~~~vt~~~~~Ps~~~~l~~~~~----------~~~~~~lr~i~~gGe~l~~~  786 (3956)
T PRK12467        727 LLPPDCARDAEAFAAL----------MADQGVTVLKIVPSHLQALLQASR----------VALPRPQRALVCGGEALQVD  786 (3956)
T ss_pred             EcCccccCCHHHHHHH----------HHHcCCeEEEcCHHHHHHHHhhhc----------cccCCcccEEEEEeecCCHH
Confidence            9884   577777777          666999999999999999986422          12346689999999999999


Q ss_pred             HHHHHHHHh-CCcccccccCccccchhccCCCC----CCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccc
Q 013869          319 VMQQWETIT-GHRLLERYGMTEFVMAISNPLRG----ARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFK  392 (435)
Q Consensus       319 l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~----~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~  392 (435)
                      +.+.|.+.+ +.+++|.||+||+++.++.....    .....++|+|+++++++|+|++++.++.+ .|||+|+|+++++
T Consensus       787 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~G~~GEL~i~G~~v~~  866 (3956)
T PRK12467        787 LLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIGQPLANLGLYILDHYLNPVPVGVVGELYIGGAGLAR  866 (3956)
T ss_pred             HHHHHHHhCCCCEEEeCcCCChhhhheeeEecccccccCCCCcccCCcCCCEEEEECCCCCCCCCCCceEEEecccccch
Confidence            999999986 68999999999998765532211    11236799999999999999999888877 7999999999999


Q ss_pred             cccCCchhccccccc-------CCccccCceEEEcCCccEEEecccccCC
Q 013869          393 EYWKLPKVTKDSFTA-------DGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       393 gy~~~~~~~~~~~~~-------~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ||+++|+.|.+.|..       ++||+|||+|++++||.++++||+||+|
T Consensus       867 GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~v  916 (3956)
T PRK12467        867 GYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQV  916 (3956)
T ss_pred             hhcCCccccHhhCcCCCCCCCCceeEecCceeEEcCCCcEEEeccccCeE
Confidence            999999999998843       3499999999999999999999999985

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7e-52  Score=417.95  Aligned_cols=399  Identities=23%  Similarity=0.336  Sum_probs=316.7

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeC---CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCC
Q 013869            1 MEVFKAAYKKGSMARDSVAIRAD---QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~---~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~   77 (435)
                      +|+.++|.+.+..+|+++|++++   ++++||+||.++++++|.+|.+.                .|+++||+|+++++|
T Consensus        10 ~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~----------------~g~~~gd~V~~~~~n   73 (576)
T PRK05620         10 LSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDE----------------LGITGDQRVGSMMYN   73 (576)
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEEeCC
Confidence            57899999999999999999874   37999999999999999999863                499999999999999


Q ss_pred             CHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCc--cccCCCCCCC------
Q 013869           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPNV------  149 (435)
Q Consensus        78 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------  149 (435)
                      +++++++++||+++|++++|+++.++.+++.++++.++++++++++...+.+..........  +..+......      
T Consensus        74 ~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  153 (576)
T PRK05620         74 CAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHM  153 (576)
T ss_pred             CHHHHHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhcc
Confidence            99999999999999999999999999999999999999999999998777666554433211  1111100000      


Q ss_pred             C------Ccccccc-chhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHH--HHhccCCCCCeeEEeecc
Q 013869          150 S------SETTVFD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML--TEAWEYTSADQFLHCLPL  220 (435)
Q Consensus       150 ~------~~~~~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~--~~~~~~~~~~~~l~~~pl  220 (435)
                      .      ......+ ...........++++++++|||||||.||+|.++|+++.......  ...+++..++++++.+|+
T Consensus       154 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl  233 (576)
T PRK05620        154 PEGIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPI  233 (576)
T ss_pred             ccccccccHHHHhhcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCCh
Confidence            0      0000000 000011224567899999999999999999999999986655432  334678889999999999


Q ss_pred             hhhhHHHHHHHHHHHcCCEEEEcC-CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhh
Q 013869          221 HHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA  299 (435)
Q Consensus       221 ~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  299 (435)
                      +|..++. .++.++..|+++++.+ .+++..+++.          +.++++|++.++|+++..++.....        ..
T Consensus       234 ~h~~g~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~  294 (576)
T PRK05620        234 YHVLSWG-VPLAAFMSGTPLVFPGPDLSAPTLAKI----------IATAMPRVAHGVPTLWIQLMVHYLK--------NP  294 (576)
T ss_pred             HHhhhhH-HHHHHHhcCceEEecCCCCCHHHHHHH----------HHHhcCceeeecCHHHHHHHHHhhc--------cC
Confidence            9999986 4788999999999876 4678887777          5668999999999999988764221        11


Q ss_pred             hhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCC--------CCCCCccceecCCCeEEEecC
Q 013869          300 SAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG--------ARKAGTVGNPLPGVQVKIAED  371 (435)
Q Consensus       300 ~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~--------~~~~~~~G~p~~~~~~~i~d~  371 (435)
                      ...+++|.+++||+.+++++.+.|.+.++.++++.||+||++.+++.....        .....++|++.++++++++|+
T Consensus       295 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~  374 (576)
T PRK05620        295 PERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND  374 (576)
T ss_pred             cccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC
Confidence            123579999999999999999999999999999999999998654421110        112347899999999999997


Q ss_pred             CCCCCC---CccceEEEecCCccccccCCchhc----------------ccccccCCccccCceEEEcCCccEEEecccc
Q 013869          372 ESGSDA---AGVGEICVKSPSLFKEYWKLPKVT----------------KDSFTADGFFKTGDTGKQDEDGYYIILGRKG  432 (435)
Q Consensus       372 ~~~~~~---~~~Gel~v~~~~~~~gy~~~~~~~----------------~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~  432 (435)
                       +...+   +..|||+++|+.++.||+++++.+                ...+..+|||+|||+|++++||++++.||.+
T Consensus       375 -g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~  453 (576)
T PRK05620        375 -GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRAR  453 (576)
T ss_pred             -CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechh
Confidence             55442   247999999999999999999887                3345567999999999999999999999999


Q ss_pred             cCC
Q 013869          433 IYF  435 (435)
Q Consensus       433 d~i  435 (435)
                      |+|
T Consensus       454 d~i  456 (576)
T PRK05620        454 DVI  456 (576)
T ss_pred             hhh
Confidence            875

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.3e-52  Score=418.00  Aligned_cols=399  Identities=27%  Similarity=0.447  Sum_probs=317.1

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +++.+.|.+++..+|+++|++++++.+||+||++++.++|++|.+                 .|+++||+|+++++|+++
T Consensus        24 ~~~~~~~~~~a~~~p~~~a~~~~~~~~ty~eL~~~~~~la~~L~~-----------------~gv~~gd~V~i~~~~~~~   86 (563)
T PRK06710         24 QPLHKYVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQK-----------------LGVEKGDRVAIMLPNCPQ   86 (563)
T ss_pred             ccHHHHHHHHHHHCCCceEEEecCeeecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCChH
Confidence            367899999999999999999999999999999999999999998                 499999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCC---C-------
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV---S-------  150 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------  150 (435)
                      +++++|||+++|++++|++|..+.+++.++++.++++++++++...+.+.............+......   .       
T Consensus        87 ~~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (563)
T PRK06710         87 AVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPF  166 (563)
T ss_pred             HHHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccch
Confidence            999999999999999999999999999999999999999999876554433221111000000000000   0       


Q ss_pred             -------------C------ccccccchh-hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHh-ccCC
Q 013869          151 -------------S------ETTVFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA-WEYT  209 (435)
Q Consensus       151 -------------~------~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~-~~~~  209 (435)
                                   .      ......... .........+++++++|||||||.||+|.++|+++..+....... .+..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~  246 (563)
T PRK06710        167 VQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCK  246 (563)
T ss_pred             hhcccccccccccccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCC
Confidence                         0      000000000 000111235789999999999999999999999987654433332 3333


Q ss_pred             C-CCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhc
Q 013869          210 S-ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE  288 (435)
Q Consensus       210 ~-~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  288 (435)
                      . .+++++..|++|..++...++.++..|+++++.+++++..+++.          +.++++|++.++|+++..+++...
T Consensus       247 ~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~  316 (563)
T PRK06710        247 EGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEA----------IKKHKVTLFPGAPTIYIALLNSPL  316 (563)
T ss_pred             CCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHH----------HHHcCCeEEeccHHHHHHHHcCCc
Confidence            3 45889999999999887667789999999999998888888887          666999999999999999886432


Q ss_pred             cccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCC-CCCCCCccceecCCCeEE
Q 013869          289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPGVQVK  367 (435)
Q Consensus       289 ~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~~~~~~G~p~~~~~~~  367 (435)
                      .        ....++++|.+++||+++++++.+.+.+.++.++++.||+||++.+...... .....+++|+|.+++.++
T Consensus       317 ~--------~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~  388 (563)
T PRK06710        317 L--------KEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAM  388 (563)
T ss_pred             c--------ccCChhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCccccccCcccccccCCccCCCCCCCeEE
Confidence            1        1224578999999999999999999999999999999999999875543221 223456899999999999


Q ss_pred             Eec-CCCCCCCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          368 IAE-DESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       368 i~d-~~~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++| +++..++.+ .|||+++|+.++.||+++++.+...+. +|||+|||+|++++||.++++||.+|+|
T Consensus       389 i~~~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~~~~~GR~dd~i  457 (563)
T PRK06710        389 IMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQ-DGWLHTGDVGYMDEDGFFYVKDRKKDMI  457 (563)
T ss_pred             EEECCCCccCCCCCceEEEEecCccchhhhCChHHHhhhcc-cCcccccceEEEcCCCcEEEeeccccEE
Confidence            998 455666655 799999999999999999999988774 7999999999999999999999999975

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=4.3e-52  Score=423.40  Aligned_cols=396  Identities=17%  Similarity=0.198  Sum_probs=299.3

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCC-----cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeC
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQ-----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~-----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~   76 (435)
                      |+.+++..+   .++++|++..+     +++||+||.+++.++|+.|++                 .|+++||+|+++++
T Consensus        88 n~~~~~~~~---~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~GdrV~i~~~  147 (652)
T TIGR01217        88 NYAENLLRA---AGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRA-----------------LGVRPGDRVSGYLP  147 (652)
T ss_pred             eHHHHHhcc---CCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence            455555543   46889988732     579999999999999999999                 49999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhh---------HHHHHHHHhccCC--ccccCCC
Q 013869           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSGA--KFSLIPP  145 (435)
Q Consensus        77 ~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~--~~~~~~~  145 (435)
                      |++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.+         .+.+.++....+.  .+..+..
T Consensus       148 n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~  227 (652)
T TIGR01217       148 NIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPY  227 (652)
T ss_pred             CCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeC
Confidence            9999999999999999999999999999999999999999999998753         3444444333221  1111110


Q ss_pred             CCC----C---CCccccccc-----hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHH-HHHHHHHhccCCCCC
Q 013869          146 VPN----V---SSETTVFDQ-----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA-QVQMLTEAWEYTSAD  212 (435)
Q Consensus       146 ~~~----~---~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~-~~~~~~~~~~~~~~~  212 (435)
                      ...    .   .......+.     ...........+++++|+|||||||.||||+++|.+++. ........+++.++|
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d  307 (652)
T TIGR01217       228 LGPRETEAPKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGD  307 (652)
T ss_pred             CCCcccccccccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCc
Confidence            000    0   000000000     000111234568999999999999999999999998654 444455567889999


Q ss_pred             eeEEeecchhhhHHHHHHHHHHHcCCEEEEcCC----cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhc
Q 013869          213 QFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE  288 (435)
Q Consensus       213 ~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  288 (435)
                      ++++..|+.|....  .++.+|..|+++++.+.    .++..+++.          ++++++|++...|.+++.+.+. .
T Consensus       308 ~~~~~~~~~~~~~~--~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~~~~l~~~-~  374 (652)
T TIGR01217       308 RLFYYTTTGWMMWN--WLVSGLATGATLVLYDGSPGFPATNVLWDI----------AERTGATLFGTSAKYVMACRKA-G  374 (652)
T ss_pred             EEEEeCCcchhhhH--HHHHHHhcCcEEEEECCCCCCCCchHHHHH----------HHHhCCeEEecCHHHHHHHHhc-C
Confidence            99999999998643  36689999999999863    256677777          6779999987777776665432 1


Q ss_pred             cccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhC--CcccccccCccccchhc-cCCCCCCCCCccceecCCCe
Q 013869          289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG--HRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQ  365 (435)
Q Consensus       289 ~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~--~~l~~~YG~tE~~~~~~-~~~~~~~~~~~~G~p~~~~~  365 (435)
                      ..     .....++++||.+++||+++++++.+.+.+.++  ..+.+.||+||++.... .........+++|.|.+|++
T Consensus       375 ~~-----~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~  449 (652)
T TIGR01217       375 VH-----PARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTA  449 (652)
T ss_pred             CC-----ccccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCc
Confidence            00     112346899999999999999999999999885  35678999999743322 22222334578999999999


Q ss_pred             EEEecCCCCCCCCccceEEEecC--CccccccCCchhcc--cc-cc-cCCccccCceEEEcCCccEEEecccccCC
Q 013869          366 VKIAEDESGSDAAGVGEICVKSP--SLFKEYWKLPKVTK--DS-FT-ADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       366 ~~i~d~~~~~~~~~~Gel~v~~~--~~~~gy~~~~~~~~--~~-~~-~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++|+|++|+.++++.|||+++|+  .++.|||++++.+.  +. |. -+|||+|||+|++|+||+++++||.||+|
T Consensus       450 v~ivd~~g~~~~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I  525 (652)
T TIGR01217       450 VQSWDPEGKPVTGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTL  525 (652)
T ss_pred             eEEECCCCCCCCCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeE
Confidence            99999999988766899999996  68999999998654  22 22 26899999999999999999999999986

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=6.7e-52  Score=423.90  Aligned_cols=397  Identities=20%  Similarity=0.194  Sum_probs=301.7

Q ss_pred             hHHH-HHHHhcccCCCeeEEEeCC--------cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 013869            2 EVFK-AAYKKGSMARDSVAIRADQ--------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (435)
Q Consensus         2 ~i~~-~~~~~~~~~p~~~al~~~~--------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~   72 (435)
                      |+.+ .|.+++.++|+++|++..+        +++||+||.+++.++|+.|++                 +|+++||+|+
T Consensus       175 n~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-----------------~Gv~~GdrVa  237 (728)
T PLN03052        175 NVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDA-----------------LGFEKGDAIA  237 (728)
T ss_pred             EHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEE
Confidence            3434 4445556789999999754        379999999999999999999                 4999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhH------HHHHHHHhccCCccccCCCC
Q 013869           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR------EVLQNVASKSGAKFSLIPPV  146 (435)
Q Consensus        73 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~  146 (435)
                      ++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++.+.      +............+..+...
T Consensus       238 i~~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~  317 (728)
T PLN03052        238 IDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPAD  317 (728)
T ss_pred             EEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCC
Confidence            999999999999999999999999999999999999999999999999987542      11111111111111111110


Q ss_pred             CC---CC---Ccccccc---ch------hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCC
Q 013869          147 PN---VS---SETTVFD---QS------QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA  211 (435)
Q Consensus       147 ~~---~~---~~~~~~~---~~------~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~  211 (435)
                      ..   ..   ......+   ..      ..........+++++|+|||||||.||||+++|.+++..+......+++.++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~  397 (728)
T PLN03052        318 GKSVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKG  397 (728)
T ss_pred             CCccccccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCC
Confidence            00   00   0000000   00      0001112356899999999999999999999999988777766666788999


Q ss_pred             CeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCC-cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccc
Q 013869          212 DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM  290 (435)
Q Consensus       212 ~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  290 (435)
                      |+++...|+.|.++.+ .++++|..|+++++.++ .++..+++.          ++++++|++.++|++++.+.+...  
T Consensus       398 d~~~~~~~l~w~~g~~-~v~~~L~~Gat~vl~~g~p~~~~~~~~----------i~~~~vT~l~~~Pt~l~~l~~~~~--  464 (728)
T PLN03052        398 DIVCWPTNLGWMMGPW-LVYASLLNGATLALYNGSPLGRGFAKF----------VQDAKVTMLGTVPSIVKTWKNTNC--  464 (728)
T ss_pred             cEEEECCCcHHHhHHH-HHHHHHHhCCEEEEeCCCCCCChHHHH----------HHHHCCCEEEECHHHHHHHHhcCC--
Confidence            9999999999999985 58899999999999875 455667777          667999999999999999876421  


Q ss_pred             cHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhC-CcccccccCccccchhc-cCCCCCCCCCccceecCCCeEEE
Q 013869          291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVKI  368 (435)
Q Consensus       291 ~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~-~~l~~~YG~tE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i  368 (435)
                            ....++++||.++++|++++++....+.+.++ .++.+.||.||+++.+. .........+++|+|.+|++++|
T Consensus       465 ------~~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v  538 (728)
T PLN03052        465 ------MAGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFI  538 (728)
T ss_pred             ------cccCChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEE
Confidence                  12346789999999999999999887777765 57999999999875433 22222345678999999999999


Q ss_pred             ecCCCCCCCCc---cceEEEecCC--ccccccCCchhcccccc------cCCccccCceEEEcCCccEEEecccccCC
Q 013869          369 AEDESGSDAAG---VGEICVKSPS--LFKEYWKLPKVTKDSFT------ADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       369 ~d~~~~~~~~~---~Gel~v~~~~--~~~gy~~~~~~~~~~~~------~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +|++|+.++.+   .|||+++++.  ...+|+++.. ...-|.      ++.||+|||+|++|+||+++++||+||+|
T Consensus       539 ~d~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~-~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I  615 (728)
T PLN03052        539 LDDSGNPYPDDAPCTGELALFPLMFGASSTLLNADH-YKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTM  615 (728)
T ss_pred             ECCCCCCCCCCCCceEEEEEeCCCCCCCccccCchh-hhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEE
Confidence            99999988764   5999998653  2356666532 222221      23499999999999999999999999986

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=3.1e-52  Score=491.32  Aligned_cols=391  Identities=19%  Similarity=0.296  Sum_probs=327.9

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      +++++|.+++.++||++|+++.+.++||+||.++++++|+.|.+                 +|+++|++|+|++++++++
T Consensus      3721 ~~~~~~~~~~~~~p~~~Av~~~~~~~tY~eL~~~~~~la~~L~~-----------------~gv~~~~~V~v~~~~s~~~ 3783 (4334)
T PRK05691       3721 SYVRLFEAQVAAHPQRIAASCLDQQWSYAELNRAANRLGHALRA-----------------AGVGVDQPVALLAERGLDL 3783 (4334)
T ss_pred             CHHHHHHHHHHhCCCceEEEcCCCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHH
Confidence            57899999999999999999999999999999999999999998                 4999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCc-cccCCCCCCCCCccccccchh
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FSLIPPVPNVSSETTVFDQSQ  160 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  160 (435)
                      ++++||++++|+++||++|.++.+++.++++.+++++++++................. ...+.......    ......
T Consensus      3784 ~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 3859 (4334)
T PRK05691       3784 LGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEEVQ----AGEVAS 3859 (4334)
T ss_pred             HHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecccc----cccccc
Confidence            9999999999999999999999999999999999999999987665433332221110 00000000000    000001


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEE
Q 013869          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (435)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~  240 (435)
                      ..+.....+++.+|++|||||||.||||.++|+++.+.+.+....+++.+.++++...+++|..+++ .++.++..|+++
T Consensus      3860 ~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~-~~~~~l~~G~~l 3938 (4334)
T PRK05691       3860 HNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVW-QFLAAPLFGARV 3938 (4334)
T ss_pred             cCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHH-HHHHHHhCCCEE
Confidence            1122345689999999999999999999999999999999999999999999999999999999986 699999999999


Q ss_pred             EEcCC---cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCH
Q 013869          241 EFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (435)
Q Consensus       241 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~  317 (435)
                      ++++.   .++..++..          +.++++|++..+|+++..++..           ....+++||.+++|||++++
T Consensus      3939 ~i~~~~~~~~~~~l~~~----------~~~~~vt~~~~~Ps~~~~l~~~-----------~~~~~~~lr~~~~gGe~l~~ 3997 (4334)
T PRK05691       3939 EIVPNAIAHDPQGLLAH----------VQAQGITVLESVPSLIQGMLAE-----------DRQALDGLRWMLPTGEAMPP 3997 (4334)
T ss_pred             EEcCccccCCHHHHHHH----------HHHcCCeEEEeCHHHHHHHHhh-----------ccccCCCceEEEecCCcCCH
Confidence            99875   355666666          6669999999999999988753           12346789999999999999


Q ss_pred             HHHHHHHHHh-CCcccccccCccccchhccCC----CCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCcc
Q 013869          318 PVMQQWETIT-GHRLLERYGMTEFVMAISNPL----RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLF  391 (435)
Q Consensus       318 ~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~----~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~  391 (435)
                      ++.++|.+.+ +++++|.||.||++..++...    .......++|+|++|+++.|+|++++.+|.+ .|||+|+|++++
T Consensus      3998 ~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~~p~g~~GEL~i~G~~v~ 4077 (4334)
T PRK05691       3998 ELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLDEALELVPLGAVGELCVAGTGVG 4077 (4334)
T ss_pred             HHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEECCCCCCCCCCCceEEEEeccccc
Confidence            9999998876 779999999999987554211    1112345799999999999999999998888 799999999999


Q ss_pred             ccccCCchhccccccc-------CCccccCceEEEcCCccEEEecccccCC
Q 013869          392 KEYWKLPKVTKDSFTA-------DGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       392 ~gy~~~~~~~~~~~~~-------~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +||+++|+.|+++|..       ++||+|||+|++++||.|+|+||+||+|
T Consensus      4078 ~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qv 4128 (4334)
T PRK05691       4078 RGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQV 4128 (4334)
T ss_pred             ccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcE
Confidence            9999999999999843       5699999999999999999999999975

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-51  Score=411.70  Aligned_cols=387  Identities=21%  Similarity=0.321  Sum_probs=312.5

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      ++.+.|.+++.  ++++|++..++++||+||+++++++|++|+++                .+++++++|+++++|++++
T Consensus         6 ~~~~~l~~~a~--~~~~a~~~~~~~~Ty~el~~~v~~lA~~L~~~----------------~~~~~~~~V~i~~~n~~~~   67 (529)
T PRK07867          6 TVAELLLPLAE--DDDRGLYFEDSFTSWREHIRGSAARAAALRAR----------------LDPTRPPHVGVLLDNTPEF   67 (529)
T ss_pred             cHHHHHHHhcc--cCCceEEECCcEEeHHHHHHHHHHHHHHHHHh----------------hCCCCCCEEEEECCCCHHH
Confidence            57788888886  78999999999999999999999999999984                3788999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhh
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (435)
                      +++++||+++|++++|+++.++.+++.++++.+++++++++++..+.+.....  ...+..+... ........ .....
T Consensus        68 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~l~~-~~~~~  143 (529)
T PRK07867         68 SLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDP--GVRVINVDSP-AWADELAA-HRDAE  143 (529)
T ss_pred             HHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhcc--CceEEEeccc-cHHHHhcc-cCCCC
Confidence            99999999999999999999999999999999999999999988776554321  1111111100 00000000 00011


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEE
Q 013869          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (435)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~  241 (435)
                      .......++++++++|||||||.||+|.++|+++..+.......+++...|+++..+|++|..+++..++.++..|++++
T Consensus       144 ~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~  223 (529)
T PRK07867        144 PPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIA  223 (529)
T ss_pred             CCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEE
Confidence            11224567899999999999999999999999999988888888899999999999999999999877888999999999


Q ss_pred             EcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHH
Q 013869          242 FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQ  321 (435)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~  321 (435)
                      +.+++++..+++.          ++++++|++.++|+.+..++...+..        ....+++| +++||+.+++.+ +
T Consensus       224 ~~~~~~~~~~~~~----------i~~~~vt~~~~~p~~~~~ll~~~~~~--------~~~~~~lr-~~~gg~~~~~~~-~  283 (529)
T PRK07867        224 LRRKFSASGFLPD----------VRRYGATYANYVGKPLSYVLATPERP--------DDADNPLR-IVYGNEGAPGDI-A  283 (529)
T ss_pred             ecCCCCHHHHHHH----------HHHhCCeEEeccHHHHHHHHhCCCcc--------cccccceE-EEecCCCChHHH-H
Confidence            9999999998888          56689999999999999887653311        11235677 456888887664 6


Q ss_pred             HHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEec-CCCCCCCC-c------------cceEEE-e
Q 013869          322 QWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAA-G------------VGEICV-K  386 (435)
Q Consensus       322 ~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~-~------------~Gel~v-~  386 (435)
                      +|.+.++.++++.||+||+++.++...  ....+++|.|+++  ++++| +++..++. .            .|||++ +
T Consensus       284 ~~~~~~g~~l~~~YG~TE~~~~~~~~~--~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~  359 (529)
T PRK07867        284 RFARRFGCVVVDGFGSTEGGVAITRTP--DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTA  359 (529)
T ss_pred             HHHHHhCCcEEEeecccccccccccCC--CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEec
Confidence            788888999999999999986655322  2345689999999  56666 34444433 2            699999 9


Q ss_pred             cCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          387 SPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       387 ~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |++++.||+++++.+.+.|. +|||+|||+|+++++|++++.||.+|+|
T Consensus       360 g~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i  407 (529)
T PRK07867        360 GPGGFEGYYNDPEADAERMR-GGVYWSGDLAYRDADGYAYFAGRLGDWM  407 (529)
T ss_pred             CCcccccccCChHhhhhhhc-CCeEeeccEEEEeCCCcEEEeccccCeE
Confidence            99999999999999988884 8999999999999999999999999975

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-51  Score=418.70  Aligned_cols=394  Identities=23%  Similarity=0.279  Sum_probs=312.6

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      .++.+.|.++++++|+++|++++++++||+||.++++++|.+|.+                 .|+++|++|+++++|+++
T Consensus        37 ~tl~~~l~~~a~~~p~~~Ai~~~~~~~Ty~eL~~~~~~la~~L~~-----------------~g~~~gd~V~i~~~n~~~   99 (600)
T PRK08279         37 RSLGDVFEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAA-----------------RGVGKGDVVALLMENRPE   99 (600)
T ss_pred             ccHHHHHHHHHHhCCCCcEEEeCCCcccHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEECCCCHH
Confidence            368899999999999999999999999999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCc-cccCCCCCC---CCCcccc-
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FSLIPPVPN---VSSETTV-  155 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~-  155 (435)
                      ++++++||+++|++++|+++..+.+++.++++.+++++++++.+..+.+.......... ...+.....   ....... 
T Consensus       100 ~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (600)
T PRK08279        100 YLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLA  179 (600)
T ss_pred             HHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccccccccHHHHh
Confidence            99999999999999999999999999999999999999999998877766554432221 111110000   0000000 


Q ss_pred             --ccchh---hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHH
Q 013869          156 --FDQSQ---AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL  230 (435)
Q Consensus       156 --~~~~~---~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~  230 (435)
                        .....   .........+++++++|||||||.||+|.++|+++.+++......+++.+.++++..+|++|..++...+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~  259 (600)
T PRK08279        180 AAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAW  259 (600)
T ss_pred             hhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHH
Confidence              00000   1112334678999999999999999999999999999999988889999999999999999999998777


Q ss_pred             HHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEe
Q 013869          231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC  310 (435)
Q Consensus       231 ~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~  310 (435)
                      +.++..|+++++.+.+++..+++.          +.++++|++.++|+++..+++.....        .....++|.+  
T Consensus       260 ~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~p~l~~~l~~~~~~~--------~~~~~~l~~~--  319 (600)
T PRK08279        260 SSVLAAGATLALRRKFSASRFWDD----------VRRYRATAFQYIGELCRYLLNQPPKP--------TDRDHRLRLM--  319 (600)
T ss_pred             HHHHhcCcEEEEcCCCCHHHHHHH----------HHHhcceEEeehHHHHHHHHhCCCCc--------cccCcceeEE--
Confidence            888999999999999999988888          56689999999999999988753221        1133556653  


Q ss_pred             cCCCCCHHHHHHHHHHhCC-cccccccCccccchhccCCCCCCCCCccceecC----CCeE---------EEecCCCC--
Q 013869          311 GSSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPLRGARKAGTVGNPLP----GVQV---------KIAEDESG--  374 (435)
Q Consensus       311 ~G~~l~~~l~~~~~~~~~~-~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~----~~~~---------~i~d~~~~--  374 (435)
                      +|+.+++++++.|.+.++. .+++.||+||++..++..   .....++|.+.+    +..+         .+.+.++.  
T Consensus       320 ~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  396 (600)
T PRK08279        320 IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV---FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCI  396 (600)
T ss_pred             ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc---CCCCcccccccccccccceeeeeccCcCceeeCCCCccc
Confidence            4788999999999999976 599999999988654432   224456776655    3332         23333332  


Q ss_pred             CCCCc-cceEE--EecCCccccccCCchhccccc------ccCCccccCceEEEcCCccEEEecccccCC
Q 013869          375 SDAAG-VGEIC--VKSPSLFKEYWKLPKVTKDSF------TADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       375 ~~~~~-~Gel~--v~~~~~~~gy~~~~~~~~~~~------~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      .++.+ .||++  ++++.++.|| ++++.+...|      .+++||+|||+|++++||++++.||.||+|
T Consensus       397 ~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~i  465 (600)
T PRK08279        397 KVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTF  465 (600)
T ss_pred             cCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeE
Confidence            23444 79998  7899999999 8888877665      236899999999999999999999999986

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=3.5e-51  Score=410.13  Aligned_cols=397  Identities=24%  Similarity=0.403  Sum_probs=314.8

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      ++.+.|.++++++|+++|++..++.+||.||.++++++|++|.+.                 |+++||+|+++++|++++
T Consensus        22 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~-----------------gi~~g~~V~i~~~~~~~~   84 (541)
T TIGR03205        22 TLPDLLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRA-----------------GYGKDASVALYLGNTPDH   84 (541)
T ss_pred             CHHHHHHHHHHHcCCCceEEECCcEeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCChHH
Confidence            578899999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhh--HHHHHHHHhcc-CCccccCCCCC--CC-------
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY--REVLQNVASKS-GAKFSLIPPVP--NV-------  149 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~-~~~~~~~~~~~--~~-------  149 (435)
                      +++++||+++|++++|+++..+.+++.++++.++++.+++++..  .+......... ...+.......  ..       
T Consensus        85 ~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (541)
T TIGR03205        85 PINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPI  164 (541)
T ss_pred             HHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEeccccccccccccccc
Confidence            99999999999999999999999999999999999999998632  12221111110 01111111000  00       


Q ss_pred             CCc------ccccc-chhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhc------cCCCCCeeEE
Q 013869          150 SSE------TTVFD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW------EYTSADQFLH  216 (435)
Q Consensus       150 ~~~------~~~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~------~~~~~~~~l~  216 (435)
                      ...      ....+ ...........++++++++|||||||.||+|.++|+++....... ..+      .....+++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~  243 (541)
T TIGR03205       165 PADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVIC  243 (541)
T ss_pred             CCCcccccHHHHHhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEE
Confidence            000      00000 000111224567899999999999999999999999987654422 211      2234578999


Q ss_pred             eecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHH
Q 013869          217 CLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA  296 (435)
Q Consensus       217 ~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  296 (435)
                      ..|++|..++...++.++..|+++++.+.+++..++..          |.++++|++.++|+++..+++...        
T Consensus       244 ~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------  305 (541)
T TIGR03205       244 VLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRD----------IEEKRATVFPGVPTMWIALANDPS--------  305 (541)
T ss_pred             eccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHH----------HHHcCCeEeechHHHHHHHHhCcc--------
Confidence            99999999987778899999999999988888888888          666999999999999999876421        


Q ss_pred             HhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCC-CCCCCCCccceecCCCeEEEe--cCCC
Q 013869          297 ASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVKIA--EDES  373 (435)
Q Consensus       297 ~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~-~~~~~~~~~G~p~~~~~~~i~--d~~~  373 (435)
                      .....++++|.+++||+++++++.+.+.+.++.++++.||+||++.+++... .....++++|.|++++.+++.  |+++
T Consensus       306 ~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~  385 (541)
T TIGR03205       306 LEKRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPT  385 (541)
T ss_pred             ccccCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCC
Confidence            1223567899999999999999999999988999999999999987655322 223346789999999998875  4556


Q ss_pred             CCCCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          374 GSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       374 ~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +.++.+ .|||+++|+.++.||+++++.+.+.|. ++||+|||++++++||++++.||.+|+|
T Consensus       386 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~l~i~GR~~~~i  447 (541)
T TIGR03205       386 KVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFV-GDRFLTGDIGYMDTDGYFFLVDRKKDMI  447 (541)
T ss_pred             ccCCCCCeeEEEEecCCccccccCChhhhHhhhc-cCCcccCceEEEcCCceEEEEccccCeE
Confidence            666655 799999999999999999999988885 6899999999999999999999999986

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.7e-51  Score=412.57  Aligned_cols=399  Identities=24%  Similarity=0.383  Sum_probs=319.8

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      ++.+.|.++++++|+++|+++.++++||+||.++++++|.+|.+.                .|+++|++|+++++|++++
T Consensus        24 ~l~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~la~~L~~~----------------~g~~~g~~V~i~~~~~~~~   87 (560)
T PRK08974         24 SLVDMFEQAVARYADQPAFINMGEVMTFRKLEERSRAFAAYLQNG----------------LGLKKGDRVALMMPNLLQY   87 (560)
T ss_pred             cHHHHHHHHHHhCCCCceEEECCccccHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEECCCCHHH
Confidence            578899999999999999999999999999999999999999842                3999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCC-CCCCC---------
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPV-PNVSS---------  151 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------  151 (435)
                      +++++||+++|++++|+++.++.+++.+++++++++.++++++..+.+................. .....         
T Consensus        88 ~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (560)
T PRK08974         88 PIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFV  167 (560)
T ss_pred             HHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccch
Confidence            99999999999999999999999999999999999999998876665555433221111110000 00000         


Q ss_pred             ------------cccccc---c-----hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhcc---C
Q 013869          152 ------------ETTVFD---Q-----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE---Y  208 (435)
Q Consensus       152 ------------~~~~~~---~-----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~---~  208 (435)
                                  ......   .     ...........+++++++|||||||.||+|.++|.++..++......+.   .
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~  247 (560)
T PRK08974        168 VKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLH  247 (560)
T ss_pred             hhhcccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccC
Confidence                        000000   0     0001112346789999999999999999999999999877655443332   2


Q ss_pred             CCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcC-CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhh
Q 013869          209 TSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY  287 (435)
Q Consensus       209 ~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  287 (435)
                      ...+.++..+|++|.+++...++.++..|+++++.. ..++..++..          +.++++|++.++|+++..+++..
T Consensus       248 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~  317 (560)
T PRK08974        248 PGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKE----------LKKYPFTAITGVNTLFNALLNNE  317 (560)
T ss_pred             CCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHH----------HHhcCcceEcCcHHHHHHHHhCc
Confidence            345678899999999987666778888999877654 4566677776          66699999999999999998753


Q ss_pred             ccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCC-CCCCCCccceecCCCeE
Q 013869          288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPGVQV  366 (435)
Q Consensus       288 ~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~~~~~~G~p~~~~~~  366 (435)
                      .        .....++++|.+++||++++..+.+.|++.++.++++.||+||++.+++.... ......++|.|++++++
T Consensus       318 ~--------~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~  389 (560)
T PRK08974        318 E--------FQELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEI  389 (560)
T ss_pred             C--------cccCCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEE
Confidence            2        12235678999999999999999999999999999999999999866553322 22446789999999999


Q ss_pred             EEecCCCCCCCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          367 KIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       367 ~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +++|+++..++.+ .|||+++|+.++.||+++++.+...| .+|||+|||+|+++++|++++.||.+|+|
T Consensus       390 ~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~i~GR~~d~i  458 (560)
T PRK08974        390 KLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDEEGFLRIVDRKKDMI  458 (560)
T ss_pred             EEECCCCCCCCCCCceEEEEecCCcchhhcCChhhhhhhh-hcCCcccCCEEEEcCCceEEEEecccceE
Confidence            9999888887776 79999999999999999999988888 58999999999999999999999999975

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.7e-51  Score=411.88  Aligned_cols=394  Identities=20%  Similarity=0.292  Sum_probs=312.3

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC----CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCC
Q 013869            2 EVFKAAYKKGSMARDSVAIRAD----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~   77 (435)
                      ++.++|.+.++.+|++.++.+.    .+.+||.||.++++++|.+|.+.                 |+++||+|+++++|
T Consensus        11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~-----------------g~~~~d~v~i~~~~   73 (539)
T PRK07008         11 LISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAAL-----------------GVEPGDRVGTLAWN   73 (539)
T ss_pred             CHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCC
Confidence            4677899999999999888752    26899999999999999999994                 99999999999999


Q ss_pred             CHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCcc--ccCCCCCCCCC----
Q 013869           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKF--SLIPPVPNVSS----  151 (435)
Q Consensus        78 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----  151 (435)
                      +++++++++||+++|++++|+++.++.+++.++++.++++++++++++.+.+.+.........  ..+........    
T Consensus        74 ~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (539)
T PRK07008         74 GYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTP  153 (539)
T ss_pred             cHHHHHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccCCcc
Confidence            999999999999999999999999999999999999999999999988776655543322111  00100000000    


Q ss_pred             cc---cc-ccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHH--HHHHhccCCCCCeeEEeecchhhhH
Q 013869          152 ET---TV-FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ--MLTEAWEYTSADQFLHCLPLHHVHG  225 (435)
Q Consensus       152 ~~---~~-~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~--~~~~~~~~~~~~~~l~~~pl~~~~g  225 (435)
                      ..   .. .............++++++++|||||||.||+|.+||++++.+..  .....+++..+++++...|++|..+
T Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~  233 (539)
T PRK07008        154 LLCYETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNA  233 (539)
T ss_pred             cccHHHHhcccCCCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhh
Confidence            00   00 000001112245678899999999999999999999999865432  2334567788999999999999887


Q ss_pred             HHHHHHHHHHcCCEEEEcC-CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccc
Q 013869          226 LFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ  304 (435)
Q Consensus       226 ~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~  304 (435)
                      +. .++.++..|+++++.+ .+++..+++.          ++++++|++.++|+++..+++..+.        ....+++
T Consensus       234 ~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~----------l~~~~vt~~~~~P~~~~~l~~~~~~--------~~~~~~~  294 (539)
T PRK07008        234 WG-LPYSAPLTGAKLVLPGPDLDGKSLYEL----------IEAERVTFSAGVPTVWLGLLNHMRE--------AGLRFST  294 (539)
T ss_pred             HH-HHHHHHhcCceEEEecCCcCHHHHHHH----------HHHcCCEEEEechHHHHHHHhcccc--------cCCCccc
Confidence            64 3678899999999874 5677888777          6669999999999999999876432        1235789


Q ss_pred             cEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCC-----------CCCCCccceecCCCeEEEecCCC
Q 013869          305 LRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-----------ARKAGTVGNPLPGVQVKIAEDES  373 (435)
Q Consensus       305 lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~-----------~~~~~~~G~p~~~~~~~i~d~~~  373 (435)
                      +|.++++|+++++++.+.|.+.++.++++.||+||++..++.....           .....++|+|+|+++++|+|+++
T Consensus       295 l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~  374 (539)
T PRK07008        295 LRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDG  374 (539)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECCCC
Confidence            9999999999999999999999999999999999998654422110           11246789999999999999888


Q ss_pred             CCCCC---ccceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          374 GSDAA---GVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       374 ~~~~~---~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ...+.   ..|||+++|+.++.||++++.   ..+. +|||+|||+|++++||++++.||.+|+|
T Consensus       375 ~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~-~g~~~TGD~~~~~~dg~l~~~GR~~d~i  435 (539)
T PRK07008        375 RELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLV-DGWFPTGDVATIDADGFMQITDRSKDVI  435 (539)
T ss_pred             CccCCCCCcceEEEEeCCccchhhcCChh---hhhc-CCCcccCceEEEcCCCcEEEeecccCEE
Confidence            77653   269999999999999999883   3343 6899999999999999999999999975

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=3.8e-51  Score=406.86  Aligned_cols=387  Identities=21%  Similarity=0.305  Sum_probs=319.8

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      |++.+.|.++++.+|+++|++..+..+||+||.++++++|.+|.+.                 |+.+|++|+++++|+.+
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~~~~~~t~~~l~~~~~~~a~~l~~~-----------------g~~~~~~v~~~~~~~~~   64 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDSL-----------------KLPDKSPIIVFGHMSPE   64 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEeCCcEEeHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEEcCCCHH
Confidence            7899999999999999999999999999999999999999999995                 89999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchh
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (435)
                      ++++++||+++|++++|+++..+.+++.++++..++++++++.+....        ......+ .......  .......
T Consensus        65 ~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~--~~~~~~~  133 (503)
T PRK04813         65 MLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLE--------ILGIPVI-TLDELKD--IFATGNP  133 (503)
T ss_pred             HHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEeccccccc--------ccCCcEE-ehHHhhh--hhhcccc
Confidence            999999999999999999999999999999999999999998765110        0000000 0000000  0000001


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEE
Q 013869          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (435)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~  240 (435)
                      ........++++++++|||||||.||+|.++|+++.....+....+.+...++++...|++|..++. .++.++..|+++
T Consensus       134 ~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~  212 (503)
T PRK04813        134 YDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVM-DLYPTLASGGTL  212 (503)
T ss_pred             ccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHH-HHHHHHhcCCEE
Confidence            1112245678899999999999999999999999999888888888899999999999999999875 588999999999


Q ss_pred             EEcCCc---chhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCH
Q 013869          241 EFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (435)
Q Consensus       241 ~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~  317 (435)
                      ++.++.   ++..+++.          +.++++|++..+|+++..++...        ......++++|.++++|+++++
T Consensus       213 v~~~~~~~~~~~~~~~~----------~~~~~~t~~~~~p~~~~~~~~~~--------~~~~~~~~~l~~i~~~G~~l~~  274 (503)
T PRK04813        213 VALPKDMTANFKQLFET----------LPQLPINVWVSTPSFADMCLLDP--------SFNEEHLPNLTHFLFCGEELPH  274 (503)
T ss_pred             EEcChhhhcCHHHHHHH----------HHHcCCeEEEeChHHHHHHHHhh--------ccCcccCCCceEEEEecCcCCH
Confidence            998863   55666666          56689999999999998876532        1223457889999999999999


Q ss_pred             HHHHHHHHHh-CCcccccccCccccchhccC-----CCCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCc
Q 013869          318 PVMQQWETIT-GHRLLERYGMTEFVMAISNP-----LRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSL  390 (435)
Q Consensus       318 ~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~-----~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~  390 (435)
                      .+.+.|.+.+ +.++++.||+||++..++..     ........++|+|.++++++|+|+++...+.+ .|||+++|+.+
T Consensus       275 ~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~  354 (503)
T PRK04813        275 KTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQGEIVISGPSV  354 (503)
T ss_pred             HHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCCceEEEEecccc
Confidence            9999999998 78999999999987544321     11124456799999999999999988887766 79999999999


Q ss_pred             cccccCCchhcccccc---cCCccccCceEEEcCCccEEEecccccCC
Q 013869          391 FKEYWKLPKVTKDSFT---ADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       391 ~~gy~~~~~~~~~~~~---~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +.||+++++.+...|.   +.+||+|||+|++ ++|++++.||.+|+|
T Consensus       355 ~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i  401 (503)
T PRK04813        355 SKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQI  401 (503)
T ss_pred             ccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEeccccceE
Confidence            9999999999988763   2359999999999 999999999999975

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.3e-51  Score=377.74  Aligned_cols=412  Identities=23%  Similarity=0.322  Sum_probs=324.4

Q ss_pred             hHHHHHHHhcccCCCeeEEEe-----------------------CCcccCHHHHHHHHHHHHHHHhhCCCCCcccccccc
Q 013869            2 EVFKAAYKKGSMARDSVAIRA-----------------------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNE   58 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~-----------------------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~   58 (435)
                      |+.+.|.+.++.+.++.++=.                       +-..+||.|+..++..+|+.|.+             
T Consensus        42 Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~-------------  108 (678)
T KOG1180|consen   42 TLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVK-------------  108 (678)
T ss_pred             cHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHH-------------
Confidence            567888888888888888742                       12479999999999999999999             


Q ss_pred             ccccccCCCCCe-EEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccC
Q 013869           59 NSAVLAGGCGAR-IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG  137 (435)
Q Consensus        59 ~~~~~g~~~g~~-V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~  137 (435)
                          .|++++++ |+|+++.+.+|+.+++||++.+.++|.+...+.++.+.|-|+++++..+|++.+..+.+....+...
T Consensus       109 ----lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~  184 (678)
T KOG1180|consen  109 ----LGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAK  184 (678)
T ss_pred             ----hCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccC
Confidence                59997777 9999999999999999999999999999999999999999999999999999999987766654433


Q ss_pred             C--ccccCCCCCCCCCccc-------------------cccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHH
Q 013869          138 A--KFSLIPPVPNVSSETT-------------------VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSID  196 (435)
Q Consensus       138 ~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~  196 (435)
                      .  .++.+.+++.......                   ...... .++.+..++|+|+|+|||||||.||||+++|+|++
T Consensus       185 ~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~-~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiV  263 (678)
T KOG1180|consen  185 TVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENE-IPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIV  263 (678)
T ss_pred             ceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCC-CCCCCCCCCceEEEEEcCCCCCCCceEEEecccHH
Confidence            2  1222222111111000                   001111 12344578999999999999999999999999999


Q ss_pred             HHHHHHHHhc-cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceecc
Q 013869          197 AQVQMLTEAW-EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTG  275 (435)
Q Consensus       197 ~~~~~~~~~~-~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~  275 (435)
                      +.+....... .+.+.|+++.++||.|+..+.+ =+.+++.|+.+-..++.+..+.-.-+.+.  -++=+...|||.+.+
T Consensus       264 A~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~a-E~~~ft~G~~iGY~S~~TLtdts~ki~kg--~kGD~~~lkPTiM~~  340 (678)
T KOG1180|consen  264 AGVTGVGENVPELGPKDRYIAYLPLAHILELTA-ELVCFTWGGRIGYSSPLTLTDTSSKIKKG--CKGDLTELKPTIMAA  340 (678)
T ss_pred             hhhhhhcccCcccCCCceEEEechHHHHHHHHH-HHHHHhhCCEeecCCcceecccchhhccC--CcCccccccchhhhh
Confidence            9998887766 6889999999999999999986 45579999999887765443332222111  112266789999999


Q ss_pred             ccHHHHHHHhhhc----cccHHHHH------------------------------HhhhhccccEEEEecCCCCCHHHHH
Q 013869          276 VPTMYTRLIQGYE----AMDTELQA------------------------------ASASAAKQLRLMMCGSSALPLPVMQ  321 (435)
Q Consensus       276 ~P~~~~~l~~~~~----~~~~~~~~------------------------------~~~~~l~~lr~i~~~G~~l~~~l~~  321 (435)
                      +|..++++.+..-    .++.-...                              .+.-....+|.+++||++++++..+
T Consensus       341 VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQr  420 (678)
T KOG1180|consen  341 VPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQR  420 (678)
T ss_pred             hHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHH
Confidence            9999998876521    11110000                              0111235899999999999999999


Q ss_pred             HHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEec--CCCCCCCCc--cceEEEecCCccccccCC
Q 013869          322 QWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE--DESGSDAAG--VGEICVKSPSLFKEYWKL  397 (435)
Q Consensus       322 ~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d--~~~~~~~~~--~Gel~v~~~~~~~gy~~~  397 (435)
                      ++.-.+.+++.+.||.||++...+.........+.+|.|++.++++++|  +.|....+.  .||||++|+.++.||+++
T Consensus       421 F~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn  500 (678)
T KOG1180|consen  421 FMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKN  500 (678)
T ss_pred             HHHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCC
Confidence            9999999999999999998776665444556777999999999999999  445444333  799999999999999999


Q ss_pred             chhccccccc-CC--ccccCceEEEcCCccEEEecccccC
Q 013869          398 PKVTKDSFTA-DG--FFKTGDTGKQDEDGYYIILGRKGIY  434 (435)
Q Consensus       398 ~~~~~~~~~~-~g--~~~TGD~g~~~~dG~l~~~gR~~d~  434 (435)
                      ++.|++.|+. +|  ||+|||+|++.+||.|.+++|++|+
T Consensus       501 ~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdL  540 (678)
T KOG1180|consen  501 EEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDL  540 (678)
T ss_pred             hhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhh
Confidence            9999999987 88  9999999999999999999999996

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=4.9e-51  Score=442.05  Aligned_cols=393  Identities=22%  Similarity=0.351  Sum_probs=313.1

Q ss_pred             hHHHHHHHhcccCC-CeeEEEe-CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCH
Q 013869            2 EVFKAAYKKGSMAR-DSVAIRA-DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (435)
Q Consensus         2 ~i~~~~~~~~~~~p-~~~al~~-~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~   79 (435)
                      ++.+.|.++++++| +++|+.+ +++++||+||+++++++|++|++                  |+++||+|+++++|++
T Consensus       632 ~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~------------------g~~~gd~V~i~~~n~~  693 (1140)
T PRK06814        632 TLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK------------------NTPPGENVGVMLPNAN  693 (1140)
T ss_pred             CHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh------------------cCCCCCeEEEEcCCch
Confidence            46677888888876 6788776 47899999999999999999975                  8899999999999999


Q ss_pred             HHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHH--HHHhccCC--ccccCCCCCC-CCCccc
Q 013869           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ--NVASKSGA--KFSLIPPVPN-VSSETT  154 (435)
Q Consensus        80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~-~~~~~~  154 (435)
                      +++++++||+++|++++|+|+..+.+++.++++++++++++++++..+...  ........  .+..+..... ......
T Consensus       694 ~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  773 (1140)
T PRK06814        694 GAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIGLADK  773 (1140)
T ss_pred             HHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCChHHH
Confidence            999999999999999999999999999999999999999999987654321  11111111  1111111000 000000


Q ss_pred             ccc----chhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHH
Q 013869          155 VFD----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL  230 (435)
Q Consensus       155 ~~~----~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~  230 (435)
                      ..+    ..+........++|+++++|||||||.||+|.++|+++.++.......+++.++|++++.+|++|..++...+
T Consensus       774 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~  853 (1140)
T PRK06814        774 IKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGL  853 (1140)
T ss_pred             HHHHhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHH
Confidence            000    0000011135679999999999999999999999999999998888888999999999999999999987788


Q ss_pred             HHHHHcCCEEEEcCC-cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEE
Q 013869          231 LAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM  309 (435)
Q Consensus       231 ~~~l~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~  309 (435)
                      +.++..|+++++.+. .+.....+.          +.++++|++..+|+++..+.+..          ...+++++|.++
T Consensus       854 ~~~l~~G~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~l~~l~~~~----------~~~~~~~lr~v~  913 (1140)
T PRK06814        854 VLPLLSGVKVFLYPSPLHYRIIPEL----------IYDTNATILFGTDTFLNGYARYA----------HPYDFRSLRYVF  913 (1140)
T ss_pred             HHHHHcCCEEEEecCcccHHHHHHH----------HHhcCCEEEEecHHHHHHHHhhc----------ccccccceeEEE
Confidence            999999999998874 444555555          66799999999999999887631          224578899999


Q ss_pred             ecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCccceEEEecCC
Q 013869          310 CGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPS  389 (435)
Q Consensus       310 ~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~~Gel~v~~~~  389 (435)
                      +||+++++++.+.|.+.++.++++.||+||++..++.......+..++|+|.|++++++.+.++   .++.|||+++|++
T Consensus       914 ~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~g~~~~~~~~~~---~~~~Gel~v~g~~  990 (1140)
T PRK06814        914 AGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVPG---IDEGGRLFVRGPN  990 (1140)
T ss_pred             EcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCCCCCCcCCccCCCCeEEEeecCC---CCCceEEEEeCCC
Confidence            9999999999999999999999999999999876554433345677999999999999987653   2346999999999


Q ss_pred             ccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          390 LFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       390 ~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++.||+++++........+|||+|||+|++|+||++++.||.||+|
T Consensus       991 ~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i 1036 (1140)
T PRK06814        991 VMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFA 1036 (1140)
T ss_pred             cchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCee
Confidence            9999998765433222358999999999999999999999999986

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.2e-51  Score=404.75  Aligned_cols=390  Identities=20%  Similarity=0.250  Sum_probs=304.2

Q ss_pred             HHhcccCCCeeEEEe--CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHHHHHH
Q 013869            8 YKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV   85 (435)
Q Consensus         8 ~~~~~~~p~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~~~~~   85 (435)
                      -.+|+++|+++|++.  +++++||+||.++++++|+.|.++                 |+++||+|+++++|++++++++
T Consensus         4 ~~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~-----------------gv~~gd~V~i~~~n~~~~~~~~   66 (501)
T PRK13390          4 GTHAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDA-----------------GLRTGDVVALLSDNSPEALVVL   66 (501)
T ss_pred             chhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHHHHHH
Confidence            356788999999986  368999999999999999999994                 9999999999999999999999


Q ss_pred             HHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhhhhcc
Q 013869           86 LGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMD  165 (435)
Q Consensus        86 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (435)
                      |||+++|++++|+++.++.+++.++++.+++++++++.................+ .+..  ..................
T Consensus        67 la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~  143 (501)
T PRK13390         67 WAALRSGLYITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLPLRL-SFGG--EIDGFGSFEAALAGAGPR  143 (501)
T ss_pred             HHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccceEE-EecC--cccccccHHHHhcccCCC
Confidence            9999999999999999999999999999999999998765443333222111000 0000  000000000000000001


Q ss_pred             CCCCCCcEEEEecCCCCCCCceEEee--hHHHHHHH----HHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCE
Q 013869          166 GQRGEDPALIVYTSGTTGKPKGVVHT--HKSIDAQV----QMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (435)
Q Consensus       166 ~~~~~~~~~i~~TSGtTG~pK~v~~t--~~~l~~~~----~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~  239 (435)
                      .....+.++++|||||||.||+|.++  |.++....    ......+.+..+++++..+|++|..++.. .+..+..|++
T Consensus       144 ~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~-~~~~~~~g~~  222 (501)
T PRK13390        144 LTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRW-CSMVHALGGT  222 (501)
T ss_pred             CCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHH-HHHHHhcCce
Confidence            11223579999999999999999964  55544321    11233457888999999999999998754 4446778999


Q ss_pred             EEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHH
Q 013869          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (435)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l  319 (435)
                      +++.+.+++..++..          ++++++|++.++|+++..+++.....      .....++++|.++.+|++++.++
T Consensus       223 ~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~~~~l~~v~~~g~~~~~~~  286 (501)
T PRK13390        223 VVLAKRFDAQATLGH----------VERYRITVTQMVPTMFVRLLKLDADV------RTRYDVSSLRAVIHAAAPCPVDV  286 (501)
T ss_pred             EEEcCCcCHHHHHHH----------HHHcCCeEEEecHHHHHHHHhccchh------cccCChhhhheEEEcCCCCCHHH
Confidence            999999998888888          66699999999999999987642111      12234678999999999999999


Q ss_pred             HHHHHHHhCCcccccccCccccchhccCC-CCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccccccCC
Q 013869          320 MQQWETITGHRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKL  397 (435)
Q Consensus       320 ~~~~~~~~~~~l~~~YG~tE~~~~~~~~~-~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~~  397 (435)
                      .+.+.+.++.++++.||+||++.++.... ......+++|+|+++ +++|+|+++..++.+ .|||+++|+.++.||+++
T Consensus       287 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~  365 (501)
T PRK13390        287 KHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICDDDGNELPAGRIGTVYFERDRLPFRYLND  365 (501)
T ss_pred             HHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEECCCCCCCCCCCceEEEEecCCccccccCC
Confidence            99999999999999999999976544322 223456789999999 799999988887666 799999999999999999


Q ss_pred             chhccccccc--CCccccCceEEEcCCccEEEecccccCC
Q 013869          398 PKVTKDSFTA--DGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       398 ~~~~~~~~~~--~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++.+.+.+..  ++|++|||+|++|+||++++.||.||+|
T Consensus       366 ~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i  405 (501)
T PRK13390        366 PEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMI  405 (501)
T ss_pred             hhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccce
Confidence            9999888754  5799999999999999999999999986

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.2e-51  Score=412.11  Aligned_cols=394  Identities=21%  Similarity=0.318  Sum_probs=298.7

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCC---------cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeE
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQ---------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI   71 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~---------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V   71 (435)
                      |++.+.|.+++..+|+++|+++.+         +++||+||.++++++|++|.+.                 | .+||+|
T Consensus         1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~-----------------g-~~gd~V   62 (578)
T PRK05850          1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRH-----------------G-STGDRA   62 (578)
T ss_pred             CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHh-----------------C-CCCCEE
Confidence            789999999999999999998632         6899999999999999999984                 7 589999


Q ss_pred             EEEeCCCHHHHHHHHHHHHhCCeEEeCCC---CCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC-ccccCCCCC
Q 013869           72 GIVAKPSFEFVAGVLGTWFSGCIAVPLAL---SYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFSLIPPVP  147 (435)
Q Consensus        72 ~i~~~~~~~~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~  147 (435)
                      +++++|+++++++++||+++|++++|+++   ..+.+++.++++.+++++++++++..+.+......... ....+...+
T Consensus        63 ~l~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (578)
T PRK05850         63 VILAPQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVD  142 (578)
T ss_pred             EEEcCCcccHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeec
Confidence            99999999999999999999999999997   45788999999999999999999887766543221110 000000000


Q ss_pred             CCCCccccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhc-c-----CCCCCeeEEeecch
Q 013869          148 NVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW-E-----YTSADQFLHCLPLH  221 (435)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~-----~~~~~~~l~~~pl~  221 (435)
                      .....    . ..........++++++++|||||||.||+|.++|+++..++......+ .     ....+++++++|++
T Consensus       143 ~~~~~----~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  217 (578)
T PRK05850        143 LLDLD----S-PRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFY  217 (578)
T ss_pred             ccccc----c-CCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCC
Confidence            00000    0 000112234678999999999999999999999999988776655432 2     34578999999999


Q ss_pred             hhhHHHHHHHHHHHcCCEEEEcCCc----chhHHHHHHHhhcCCCCCccccccceeccccHHHHHHH-hhhccccHHHHH
Q 013869          222 HVHGLFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLI-QGYEAMDTELQA  296 (435)
Q Consensus       222 ~~~g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~-~~~~~~~~~~~~  296 (435)
                      |..|++..++.++..|+++++.++.    ++..++..          +.+++++.+ .+|..+..++ ...+.     ..
T Consensus       218 h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~----------i~~~~~~~~-~~p~~~~~~~~~~~~~-----~~  281 (578)
T PRK05850        218 HDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQL----------LASNPHAFS-AAPNFAFELAVRKTSD-----DD  281 (578)
T ss_pred             CCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHH----------HHHcCCeEE-eCCcHHHHHHHHhcch-----hh
Confidence            9999887899999999999998754    45555555          666888865 5565544433 21110     01


Q ss_pred             HhhhhccccEEEEecCCCCCHHHHHHHHHHhC------CcccccccCccccchhccCCCCC-------------------
Q 013869          297 ASASAAKQLRLMMCGSSALPLPVMQQWETITG------HRLLERYGMTEFVMAISNPLRGA-------------------  351 (435)
Q Consensus       297 ~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~------~~l~~~YG~tE~~~~~~~~~~~~-------------------  351 (435)
                      ....+++++|.++.||+++++++.++|.+.|+      ..+++.||+||++..+.......                   
T Consensus       282 ~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  361 (578)
T PRK05850        282 MAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKR  361 (578)
T ss_pred             hcCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEe
Confidence            12235678999999999999999999999873      36899999999875433211100                   


Q ss_pred             ------CCCCccceecCCCeEEEecCC-CCCCCCc-cceEEEecCCccccccCCchhccccccc-----------CCccc
Q 013869          352 ------RKAGTVGNPLPGVQVKIAEDE-SGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTA-----------DGFFK  412 (435)
Q Consensus       352 ------~~~~~~G~p~~~~~~~i~d~~-~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~-----------~g~~~  412 (435)
                            ....++|.|. +++++++|++ +..++.+ .||||++|+.++.||+++++.+.+.|+.           +|||+
T Consensus       362 ~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~  440 (578)
T PRK05850        362 CETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLR  440 (578)
T ss_pred             cCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeee
Confidence                  0011344443 5789999854 5556655 7999999999999999999999988842           57999


Q ss_pred             cCceEEEcCCccEEEecccccCC
Q 013869          413 TGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       413 TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |||+|+++ ||++++.||++|+|
T Consensus       441 TGDl~~~~-~G~l~~~GR~~d~i  462 (578)
T PRK05850        441 TGDLGFIS-EGELFIVGRIKDLL  462 (578)
T ss_pred             ccceeeEE-CCEEEEEcccccEE
Confidence            99999997 89999999999986

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.8e-51  Score=484.87  Aligned_cols=386  Identities=23%  Similarity=0.353  Sum_probs=327.0

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      +++++|.++++++|+++|+++.++++||+||.++++++|++|.++                 |+++|++|++++++++++
T Consensus      1132 ~l~~~~~~~a~~~p~~~Al~~~~~~lTY~eL~~~~~~lA~~L~~~-----------------gv~~g~~V~i~~~~s~~~ 1194 (4334)
T PRK05691       1132 WLPELLNEQARQTPERIALVWDGGSLDYAELHAQANRLAHYLRDK-----------------GVGPDVCVAIAAERSPQL 1194 (4334)
T ss_pred             CHHHHHHHHHHhCCCCeEEEECCceEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence            578999999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhh
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (435)
                      ++++||++++|++++|+++.++.+++.++++.+++++++++......+....   ......+.   ....    ......
T Consensus      1195 iv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~---~~~~----~~~~~~ 1264 (4334)
T PRK05691       1195 LVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAE---GVSAIALD---SLHL----DSWPSQ 1264 (4334)
T ss_pred             HHHHHHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhccccc---CceEEeec---cccc----cccCCC
Confidence            9999999999999999999999999999999999999999987654432210   00000000   0000    000011


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEE
Q 013869          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (435)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~  241 (435)
                      .+.....++++++++|||||||.||||.++|+++.+.+.+....+++.++++++...|++|..+++ .++.++..|++++
T Consensus      1265 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~-~~~~~L~~G~~l~ 1343 (4334)
T PRK05691       1265 APGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVW-ECFWPLITGCRLV 1343 (4334)
T ss_pred             CCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHH-HHHHHHhCCCEEE
Confidence            112244678999999999999999999999999999999988899999999999999999999886 6999999999999


Q ss_pred             EcCC---cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHH
Q 013869          242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (435)
Q Consensus       242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~  318 (435)
                      +.+.   .++..++..          +.++++|++.++|++++.+.+...          ...++++|.+++||++++++
T Consensus      1344 i~~~~~~~~~~~l~~~----------i~~~~vt~~~~~Ps~l~~l~~~~~----------~~~~~~lr~~~~gGe~l~~~ 1403 (4334)
T PRK05691       1344 LAGPGEHRDPQRIAEL----------VQQYGVTTLHFVPPLLQLFIDEPL----------AAACTSLRRLFSGGEALPAE 1403 (4334)
T ss_pred             EcCccccCCHHHHHHH----------HHHcCCeEEECcHHHHHHHHhCcc----------cccCCcccEEEEeecCCCHH
Confidence            9864   566677777          666999999999999999876321          23578999999999999999


Q ss_pred             HHHHHHHHh-CCcccccccCccccchhccC--CCCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccccc
Q 013869          319 VMQQWETIT-GHRLLERYGMTEFVMAISNP--LRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEY  394 (435)
Q Consensus       319 l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~--~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy  394 (435)
                      +.+.|.+.+ +.+++|.||.||+++.++..  ........++|+|+++++++|+|++++.++.+ .|||+|+|+++++||
T Consensus      1404 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~G~~GEL~i~G~~v~~GY 1483 (4334)
T PRK05691       1404 LRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLDAELNLLPPGVAGELCIGGAGLARGY 1483 (4334)
T ss_pred             HHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEECCCCCCCCCCCceEEEecCcccchhh
Confidence            999999987 67999999999998665521  12234567899999999999999999988877 799999999999999


Q ss_pred             cCCchhccccccc-------CCccccCceEEEcCCccEEEecccccCC
Q 013869          395 WKLPKVTKDSFTA-------DGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       395 ~~~~~~~~~~~~~-------~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +++|+.|.+.|..       .+||+|||+|++++||.++++||+||+|
T Consensus      1484 l~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qi 1531 (4334)
T PRK05691       1484 LGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQV 1531 (4334)
T ss_pred             cCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEE
Confidence            9999999998843       3599999999999999999999999975

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.1e-51  Score=407.40  Aligned_cols=395  Identities=21%  Similarity=0.332  Sum_probs=313.2

Q ss_pred             ChHHHHHHHhcccCCCeeEEEe--C--CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeC
Q 013869            1 MEVFKAAYKKGSMARDSVAIRA--D--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~--~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~   76 (435)
                      +++.++|.++++++||+++++.  +  .+++||+||.++++++|++|.+.                 |+++||+|+++++
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~-----------------g~~~gd~v~i~~~   72 (542)
T PRK06018         10 LLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRD-----------------GIKLGDRVATIAW   72 (542)
T ss_pred             CCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcC
Confidence            5788999999999999999984  2  36899999999999999999994                 9999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC--ccccCCCCCCCCCcc-
Q 013869           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSET-  153 (435)
Q Consensus        77 ~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-  153 (435)
                      |+++++++++||+++|++++|+++.++.+++.++++.+++++++++.++.+.+.+.......  .+..+.......... 
T Consensus        73 ~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (542)
T PRK06018         73 NTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTL  152 (542)
T ss_pred             CchHHHHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCc
Confidence            99999999999999999999999999999999999999999999999888777665443321  111111110000000 


Q ss_pred             ----ccc----cchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHH-H-HHHHHHHhccCCCCCeeEEeecchhh
Q 013869          154 ----TVF----DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSID-A-QVQMLTEAWEYTSADQFLHCLPLHHV  223 (435)
Q Consensus       154 ----~~~----~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~-~-~~~~~~~~~~~~~~~~~l~~~pl~~~  223 (435)
                          ...    ............++++++++|||||||.||+|.+||++.+ . ........+++..+++++...|++|.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~  232 (542)
T PRK06018        153 KNAVAYEEWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHA  232 (542)
T ss_pred             cccccHHHHhccCCcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHH
Confidence                000    0000111123466889999999999999999999999743 2 22333456678899999999999999


Q ss_pred             hHHHHHHHHHHHcCCEEEEcC-CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhc
Q 013869          224 HGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA  302 (435)
Q Consensus       224 ~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l  302 (435)
                      .++.. .+.++..|+++++.. .+++..+++.          ++++++|++.++|+++..+++..+..        ..++
T Consensus       233 ~~~~~-~~~~~~~g~~~v~~~~~~~~~~~~~~----------l~~~~~t~~~~~p~~~~~l~~~~~~~--------~~~~  293 (542)
T PRK06018        233 NSWGI-AFSAPSMGTKLVMPGAKLDGASVYEL----------LDTEKVTFTAGVPTVWLMLLQYMEKE--------GLKL  293 (542)
T ss_pred             hhhHH-HHhhhhcCceEEccCcCCCHHHHHHH----------HHhcCCceeecCcHHHHHHHhccccc--------CCCc
Confidence            88764 567889999998874 5677777777          56689999999999999998754322        2356


Q ss_pred             cccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCC-C-C---------CCCCCccceecCCCeEEEecC
Q 013869          303 KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPL-R-G---------ARKAGTVGNPLPGVQVKIAED  371 (435)
Q Consensus       303 ~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~-~-~---------~~~~~~~G~p~~~~~~~i~d~  371 (435)
                      +++|.++++|+++++++++.|++ ++.++++.||+||++.+++... . .         .....++|+|.++++++|+|+
T Consensus       294 ~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~  372 (542)
T PRK06018        294 PHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDD  372 (542)
T ss_pred             ccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECC
Confidence            78999999999999999999999 8999999999999986544211 0 0         012357899999999999999


Q ss_pred             CCCCCCC---ccceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          372 ESGSDAA---GVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       372 ~~~~~~~---~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++...+.   ..|||+++|+.++.||+++   +...++.+|||+|||+|++++||++++.||.+|+|
T Consensus       373 ~~~~~~~~~~~~Gel~i~g~~~~~gy~~~---~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i  436 (542)
T PRK06018        373 AGKELPWDGKTFGRLKVRGPAVAAAYYRV---DGEILDDDGFFDTGDVATIDAYGYMRITDRSKDVI  436 (542)
T ss_pred             CCCCCCCCCCceeEEEEecCCcchhhhcC---cccEecCCcEEEcCCEEEEcCCccEEEEecCCCeE
Confidence            8877653   2699999999999999983   23445668999999999999999999999999975

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=5.6e-50  Score=403.18  Aligned_cols=398  Identities=18%  Similarity=0.282  Sum_probs=308.4

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +|+...|.+.+..+|+++|+++.+..+||+||.++++++|.+|.+                 .|+++||+|+++++|+++
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~eL~~~~~~lA~~L~~-----------------~g~~~gd~V~i~~~n~~~   82 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAK-----------------RSIGPGSTVAVIAPNIPA   82 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEECCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCcHH
Confidence            357788899999999999999998999999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccC---------CccccCCCCCC---
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG---------AKFSLIPPVPN---  148 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~---  148 (435)
                      ++++++||+++|++++|+++.++.+++.++++.++++.+++++++.+..........         ..+..+.....   
T Consensus        83 ~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (567)
T PLN02479         83 MYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPK  162 (567)
T ss_pred             HHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcc
Confidence            999999999999999999999999999999999999999999987665544322111         01111110000   


Q ss_pred             -CC-----Ccccccc---c-hhh-hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEe
Q 013869          149 -VS-----SETTVFD---Q-SQA-EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHC  217 (435)
Q Consensus       149 -~~-----~~~~~~~---~-~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~  217 (435)
                       ..     ......+   . ... ........++.++++|||||||.||+|.++|+++..........+++..+++++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~  242 (567)
T PLN02479        163 SLQYALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWT  242 (567)
T ss_pred             ccccccccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEe
Confidence             00     0000000   0 000 00112234567889999999999999999999987766666667788899999999


Q ss_pred             ecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHH
Q 013869          218 LPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA  297 (435)
Q Consensus       218 ~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  297 (435)
                      +|++|..++...+..++..|.+++ +..+++..+++.          ++++++|++.++|.++..+.+..+.       .
T Consensus       243 ~p~~h~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~l~~~~~~-------~  304 (567)
T PLN02479        243 LPMFHCNGWCFTWTLAALCGTNIC-LRQVTAKAIYSA----------IANYGVTHFCAAPVVLNTIVNAPKS-------E  304 (567)
T ss_pred             cchhhhhhHHHHHHHHhhcCceEe-ccCCCHHHHHHH----------HHHcCCeEEEecHHHHHHHHhhhhh-------c
Confidence            999999987654445566666554 467888888888          5669999999999999999865221       1


Q ss_pred             hhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccC---CC--------CCCCCCccceecCCCe-
Q 013869          298 SASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP---LR--------GARKAGTVGNPLPGVQ-  365 (435)
Q Consensus       298 ~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~---~~--------~~~~~~~~G~p~~~~~-  365 (435)
                      ....+++++.++++|+++++++.++|.+. +.++++.||+||+++.++..   ..        ......+.|.+.+++. 
T Consensus       305 ~~~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~  383 (567)
T PLN02479        305 TILPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEG  383 (567)
T ss_pred             ccccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCc
Confidence            11246889999999999999999999876 88999999999986433211   00        0011235688888876 


Q ss_pred             EEEecC-CCCCCCC--c-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          366 VKIAED-ESGSDAA--G-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       366 ~~i~d~-~~~~~~~--~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++|+|+ .+..++.  + .|||+++|+.++.||+++++.+.+.|. +|||+|||+|+++++|+++++||.+|+|
T Consensus       384 ~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~-~g~~~TGDl~~~~~~g~l~~~GR~~d~i  456 (567)
T PLN02479        384 LDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFA-NGWFHSGDLGVKHPDGYIEIKDRSKDII  456 (567)
T ss_pred             eeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhc-CCceecceeEEEcCCccEEEeccccceE
Confidence            888884 4555542  2 699999999999999999999999984 7999999999999999999999999975

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.5e-50  Score=399.44  Aligned_cols=392  Identities=20%  Similarity=0.239  Sum_probs=312.6

Q ss_pred             HHhcccCCCeeEEEe--CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHHHHHH
Q 013869            8 YKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV   85 (435)
Q Consensus         8 ~~~~~~~p~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~~~~~   85 (435)
                      ..+++++|+++|++.  .++.+||.||.++++++|.+|.+.                 |+++|++|+++++|++++++++
T Consensus         4 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~-----------------g~~~~~~V~v~~~~~~~~~~~~   66 (511)
T PRK13391          4 GIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSL-----------------GLKRGDHVAIFMENNLRYLEVC   66 (511)
T ss_pred             hhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHHHHHHH
Confidence            467888999999987  578899999999999999999994                 9999999999999999999999


Q ss_pred             HHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCcc--ccCCCCCCCCCccccccchh-hh
Q 013869           86 LGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKF--SLIPPVPNVSSETTVFDQSQ-AE  162 (435)
Q Consensus        86 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~  162 (435)
                      +||+++|++++|+++.++.+++.+++++++++.++++......+...........  ..+................. .+
T Consensus        67 ~a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (511)
T PRK13391         67 WAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAGLP  146 (511)
T ss_pred             HHHHHhccEEeccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCCcccccHHHHhcCCC
Confidence            9999999999999999999999999999999999999987766655544332211  11110000000000000000 01


Q ss_pred             hccCCCCCCcEEEEecCCCCCCCceEEee--hHHHHH---HHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcC
Q 013869          163 KMDGQRGEDPALIVYTSGTTGKPKGVVHT--HKSIDA---QVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG  237 (435)
Q Consensus       163 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~t--~~~l~~---~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G  237 (435)
                      .......++.++++|||||||.||+|.++  |.++..   ........+++.+.++++...|++|..++. ..+.++..|
T Consensus       147 ~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~-~~~~~~~~g  225 (511)
T PRK13391        147 ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQR-AVMLVIRLG  225 (511)
T ss_pred             CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHH-HHHHHHHcC
Confidence            11122345678999999999999999964  555432   233345566788899999999999998886 477889999


Q ss_pred             CEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCH
Q 013869          238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (435)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~  317 (435)
                      +++++.+.+++..+++.          +.++++|++.++|+++..+++....      .....+++++|.+++||+++++
T Consensus       226 ~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~------~~~~~~~~~l~~~~~gg~~~~~  289 (511)
T PRK13391        226 GTVIVMEHFDAEQYLAL----------IEEYGVTHTQLVPTMFSRMLKLPEE------VRDKYDLSSLEVAIHAAAPCPP  289 (511)
T ss_pred             ceEEECCCCCHHHHHHH----------HHHhCCeEEEehHHHHHHHHhCchh------hcccCCccceeEEEEccCCCCH
Confidence            99999999999998888          5669999999999999988764221      1122357899999999999999


Q ss_pred             HHHHHHHHHhCCcccccccCccccchhccCCC-CCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCcccccc
Q 013869          318 PVMQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYW  395 (435)
Q Consensus       318 ~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~  395 (435)
                      ++++.+.+.++..+++.||+||++.++..... ....++++|+|.++ +++++|+++...+.+ .|||+++|+ +..||+
T Consensus       290 ~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d~~~~~~~~g~~Gel~~~g~-~~~gy~  367 (511)
T PRK13391        290 QVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILDDDGAELPPGEPGTIWFEGG-RPFEYL  367 (511)
T ss_pred             HHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEECCCCCCCCCCCceEEEEecC-cceEEc
Confidence            99999999999999999999999865543222 23456789999999 699999888887666 799999999 889999


Q ss_pred             CCchhcccccccC-CccccCceEEEcCCccEEEecccccCC
Q 013869          396 KLPKVTKDSFTAD-GFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       396 ~~~~~~~~~~~~~-g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++++.+...+..+ +||+|||+|++++||.+++.||.+|+|
T Consensus       368 ~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i  408 (511)
T PRK13391        368 NDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMI  408 (511)
T ss_pred             CChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEE
Confidence            9999998888655 899999999999999999999999975

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.6e-50  Score=404.16  Aligned_cols=394  Identities=21%  Similarity=0.320  Sum_probs=308.9

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCC---cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCC
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQ---KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~---~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~   77 (435)
                      +++.++|...++.+|+.+++...+   +.+||.||+.++.++|++|.+.                 |+++||+|+++++|
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~-----------------gi~~gd~V~l~~~n   83 (579)
T PRK09192         21 PTLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLAL-----------------GLKPGDRVALIAET   83 (579)
T ss_pred             hhHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEEcCC
Confidence            368899999999998877664332   6799999999999999999994                 99999999999999


Q ss_pred             CHHHHHHHHHHHHhCCeEEeCCCCCC-------HHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCC
Q 013869           78 SFEFVAGVLGTWFSGCIAVPLALSYP-------ESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS  150 (435)
Q Consensus        78 ~~~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (435)
                      +++++++++||+++|++++|+++..+       .+++.++++.+++++++++.+..+.+......... +. +.......
T Consensus        84 ~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~  161 (579)
T PRK09192         84 DGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPL-LH-VLSHAWFK  161 (579)
T ss_pred             chhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccc-cc-eeehhhhc
Confidence            99999999999999999999976433       57899999999999999999887766554322111 01 10101110


Q ss_pred             CccccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHH-hccCCCCCeeEEeecchhhhHHHHH
Q 013869          151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE-AWEYTSADQFLHCLPLHHVHGLFNA  229 (435)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~~~~l~~~pl~~~~g~~~~  229 (435)
                      ..     ...........++++++++|||||||.||+|.++|++++.++..... .+++.++|+++.++|++|..+++..
T Consensus       162 ~~-----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~  236 (579)
T PRK09192        162 AL-----PEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGF  236 (579)
T ss_pred             cc-----CCCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHH
Confidence            00     00011122356789999999999999999999999999998888777 7889999999999999999998877


Q ss_pred             HHHHHHcCCEEEEcCCc----chhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhcccc
Q 013869          230 LLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL  305 (435)
Q Consensus       230 ~~~~l~~G~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~l  305 (435)
                      ++.++..|+++++.+..    ++..++..          +.+++++.++..|..+..+......     ......+++++
T Consensus       237 ~~~~l~~g~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~~~~~~l~~~~~~~-----~~~~~~~l~~l  301 (579)
T PRK09192        237 LLTPVATQLSVDYLPTRDFARRPLQWLDL----------ISRNRGTISYSPPFGYELCARRVNS-----KDLAELDLSCW  301 (579)
T ss_pred             HHHHHHhCCeeEeeCHHHHHHCHHHHHHH----------HHhcCcEEEeCCcHHHHHHHHhhcc-----ccccccchhhh
Confidence            88889999999877632    45555555          6678999877765555554432211     01122467899


Q ss_pred             EEEEecCCCCCHHHHHHHHHHhC------CcccccccCccccchhccCCCCC----------------------------
Q 013869          306 RLMMCGSSALPLPVMQQWETITG------HRLLERYGMTEFVMAISNPLRGA----------------------------  351 (435)
Q Consensus       306 r~i~~~G~~l~~~l~~~~~~~~~------~~l~~~YG~tE~~~~~~~~~~~~----------------------------  351 (435)
                      |.+++||+++++.+.+.|.+.++      ..+++.||+||++..++......                            
T Consensus       302 r~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (579)
T PRK09192        302 RVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRV  381 (579)
T ss_pred             heeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccc
Confidence            99999999999999999998873      35899999999976544221110                            


Q ss_pred             CCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecc
Q 013869          352 RKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR  430 (435)
Q Consensus       352 ~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR  430 (435)
                      ....++|+|+|+++++|+|+++..++.+ .|||+++|+.++.||+++ +.+.+.+..+|||+|||+|++ ++|+++++||
T Consensus       382 ~~~~~vG~~~p~~~v~i~d~~~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR  459 (579)
T PRK09192        382 RTFVNCGKALPGHEIEIRNEAGMPLPERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGR  459 (579)
T ss_pred             eeEeecCCcCCCcEEEEECCCCCCCCCCCEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEec
Confidence            1124789999999999999888777666 799999999999999999 667777778999999999999 9999999999


Q ss_pred             cccCC
Q 013869          431 KGIYF  435 (435)
Q Consensus       431 ~~d~i  435 (435)
                      ++|+|
T Consensus       460 ~dd~i  464 (579)
T PRK09192        460 AKDLI  464 (579)
T ss_pred             cccEE
Confidence            99986

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-49  Score=398.06  Aligned_cols=397  Identities=22%  Similarity=0.333  Sum_probs=310.7

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +||.++|.++++++|+++|+++.++.+||.||.++++++|.+|.+                 +|+++||+|+++++|+++
T Consensus         3 ~~l~~~~~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~la~~L~~-----------------~g~~~~~~v~v~~~n~~~   65 (533)
T PRK07798          3 WNIADLFEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIA-----------------QGLGPGDHVGIYARNRIE   65 (533)
T ss_pred             ccHHHHHHHHHHhCCCceEEEECCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCCHH
Confidence            578999999999999999999999999999999999999999998                 599999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCc--cccCCCCCCCC------Cc
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPNVS------SE  152 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~  152 (435)
                      +++++|||+++|++++|+++.++.+++.++++++++++++++......+.+........  +..+.......      ..
T Consensus        66 ~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (533)
T PRK07798         66 YVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDY  145 (533)
T ss_pred             HHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccccCCccccH
Confidence            99999999999999999999999999999999999999999988777766654332211  11111110000      00


Q ss_pred             cccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHh---------ccC------CCCCeeEEe
Q 013869          153 TTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---------WEY------TSADQFLHC  217 (435)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---------~~~------~~~~~~l~~  217 (435)
                      ..................+.++++|||||||.||+|.++|+++..........         ..+      ..+++++..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (533)
T PRK07798        146 EDALAAGSPERDFGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA  225 (533)
T ss_pred             HHHHhccCCcCCCCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence            00000000011111233456799999999999999999999987655443221         111      566889999


Q ss_pred             ecchhhhHHHHHHHHHHHcCCEEEEcC--CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHH-HHhhhccccHHH
Q 013869          218 LPLHHVHGLFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR-LIQGYEAMDTEL  294 (435)
Q Consensus       218 ~pl~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~-l~~~~~~~~~~~  294 (435)
                      +|++|..+++ .++.++..|+++++.+  .+++..++..          ++++++|++.++|..+.. +.+...      
T Consensus       226 ~pl~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~~~~~~~~l~~~~~------  288 (533)
T PRK07798        226 PPLMHGAGQW-AAFAALFSGQTVVLLPDVRFDADEVWRT----------IEREKVNVITIVGDAMARPLLDALE------  288 (533)
T ss_pred             cchhhhhhHH-HHHHHHhcCceEEEecCCCcCHHHHHHH----------HHHhCCeEEEechHHHHHHHHHHhc------
Confidence            9999999997 6899999999999999  7888888888          566899999999876643 333221      


Q ss_pred             HHHhhhhccccEEEEecCCCCCHHHHHHHHHHh-CCcccccccCccccchhccCCCCCCCCCccc--eecCCCeEEEecC
Q 013869          295 QAASASAAKQLRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVG--NPLPGVQVKIAED  371 (435)
Q Consensus       295 ~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G--~p~~~~~~~i~d~  371 (435)
                       ......++++|.+++||++++.++.++|.+.+ +..+++.||+||++.+.......  .....|  ++.++..++++|+
T Consensus       289 -~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~--~~~~~g~~~~~~~~~~~i~~~  365 (533)
T PRK07798        289 -ARGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAK--GAVHTGGPRFTIGPRTVVLDE  365 (533)
T ss_pred             -ccccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCC--CCccCCCCccCCCceEEEECC
Confidence             11234578999999999999999999999988 78999999999997655433221  112333  7889999999999


Q ss_pred             CCCCCCCc-c--ceEEEecCCccccccCCchhccccccc---CCccccCceEEEcCCccEEEecccccCC
Q 013869          372 ESGSDAAG-V--GEICVKSPSLFKEYWKLPKVTKDSFTA---DGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       372 ~~~~~~~~-~--Gel~v~~~~~~~gy~~~~~~~~~~~~~---~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++...+.+ .  |+++ +++.++.||+++++.+++.|..   ++||+|||+|++|+||++++.||.+|+|
T Consensus       366 ~~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i  434 (533)
T PRK07798        366 DGNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCI  434 (533)
T ss_pred             CCCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceE
Confidence            88876665 3  5565 5668999999999999888743   4699999999999999999999999975

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.5e-49  Score=390.31  Aligned_cols=354  Identities=25%  Similarity=0.351  Sum_probs=295.3

Q ss_pred             hHHHHH-HHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            2 EVFKAA-YKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         2 ~i~~~~-~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      ++.+.+ .+.++++|+++|+++.++.+||.||.++++++|.+|.+.                 |+++|++|+++++|+++
T Consensus         3 ~~~~~~~~~~a~~~~~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~-----------------g~~~~~~v~l~~~~~~~   65 (458)
T PRK09029          3 IFSDWPWRHWAQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQ-----------------GVVEGSGVALRGKNSPE   65 (458)
T ss_pred             hhhcChHHHHHHhCCCceeeecCCcceeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEecCCCHH
Confidence            344444 345788999999999999999999999999999999995                 99999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchh
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (435)
                      ++++++||+++|++++|+++..+.+++..+++++++++++++++.... ... .       ..   .. .  .     ..
T Consensus        66 ~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~-~-------~~---~~-~--~-----~~  125 (458)
T PRK09029         66 TLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENTF-SAL-T-------SL---HL-Q--L-----VE  125 (458)
T ss_pred             HHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccch-hhc-c-------cc---cc-c--c-----cc
Confidence            999999999999999999999999999999999999999998765321 100 0       00   00 0  0     00


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEE
Q 013869          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (435)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~  240 (435)
                      ........++++++++|||||||.||+|.++|++++..+......+++.++++++..+|++|.+++. .++.++..|+++
T Consensus       126 ~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~G~~v  204 (458)
T PRK09029        126 GAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQG-IVWRWLYAGATL  204 (458)
T ss_pred             ccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhH-HHHHHHhCCceE
Confidence            0112245678999999999999999999999999999999888888999999999999999999986 477889999999


Q ss_pred             EEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHH
Q 013869          241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM  320 (435)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~  320 (435)
                      ++.+.   ..++..          +  .++|.+..+|+++..++.....            ..++|.+++||++++..+.
T Consensus       205 ~~~~~---~~~~~~----------i--~~~t~~~~~P~~~~~l~~~~~~------------~~~l~~i~~gG~~~~~~~~  257 (458)
T PRK09029        205 VVRDK---QPLEQA----------L--AGCTHASLVPTQLWRLLDNRSE------------PLSLKAVLLGGAAIPVELT  257 (458)
T ss_pred             EeCCh---HHHHHH----------H--hhceeeecChHHHHHHHhcccc------------CCcceEEEECCCCCCHHHH
Confidence            99885   233343          2  4789999999999988764221            3469999999999999999


Q ss_pred             HHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCccceEEEecCCccccccCCchh
Q 013869          321 QQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKV  400 (435)
Q Consensus       321 ~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~  400 (435)
                      +.+.+. +.++++.||+||++...+....  ....++|+|++++++++.+          |||+++|+.++.||+++++.
T Consensus       258 ~~~~~~-g~~~~~~YG~tE~~~~~~~~~~--~~~~~~G~~~~~~~~~i~~----------gel~v~g~~~~~gY~~~~~~  324 (458)
T PRK09029        258 EQAEQQ-GIRCWCGYGLTEMASTVCAKRA--DGLAGVGSPLPGREVKLVD----------GEIWLRGASLALGYWRQGQL  324 (458)
T ss_pred             HHHHHc-CCcEeccccccccCcceeccCC--CCCCCCCCCCCCCEEEEeC----------CEEEEecCceeeeeecCccc
Confidence            998865 9999999999999865543222  2345699999999999987          89999999999999999888


Q ss_pred             cccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          401 TKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       401 ~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +.... .+|||+|||+|++| ||++++.||.+|+|
T Consensus       325 ~~~~~-~~~~~~TGD~~~~~-~g~l~~~gR~~d~i  357 (458)
T PRK09029        325 VPLVN-DEGWFATRDRGEWQ-NGELTILGRLDNLF  357 (458)
T ss_pred             ccccc-CCCccCCCCcEEEe-CCEEEEecccccce
Confidence            76543 57999999999998 99999999999986

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=1.3e-49  Score=385.39  Aligned_cols=363  Identities=25%  Similarity=0.412  Sum_probs=299.0

Q ss_pred             CHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHH
Q 013869           28 SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESEL  107 (435)
Q Consensus        28 Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l  107 (435)
                      ||+||.+.++++|++|.+.                .|+++||+|+++++|+++++++++||+.+|++++|+++.++.+++
T Consensus         1 t~~~l~~~~~~~a~~l~~~----------------~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~   64 (408)
T TIGR01733         1 TYRELDERANRLARHLRAA----------------GGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERL   64 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHh----------------hCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHH
Confidence            7999999999999999983                389999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhhhhccCCCCCCcEEEEecCCCCCCCce
Q 013869          108 LHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG  187 (435)
Q Consensus       108 ~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~  187 (435)
                      .+++++++++++++++.....+.....    ....+.. ........  .............+++++++|||||||.||+
T Consensus        65 ~~~l~~~~~~~ii~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~  137 (408)
T TIGR01733        65 AFILEDAGARLLLTDSALASRLAGLVL----PIILVDP-LELAALDD--APAPPPPDAPSGPDDLAYVIYTSGSTGRPKG  137 (408)
T ss_pred             HHHHHhcCCCEEEEcCchhhhccccCC----ceEEech-hhhhhccc--ccccccccCCCCCCCcEEEEEcCCCCCCCCE
Confidence            999999999999999987665433211    1111100 00000000  0000001111457899999999999999999


Q ss_pred             EEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcch---hHHHHHHHhhcCCCCC
Q 013869          188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV---RGIWQRWRESYPVNGN  264 (435)
Q Consensus       188 v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~---~~~~~~~~~~~~~~~~  264 (435)
                      |.++|+++..........+.+.+.+++++..|++|..++. .++.++..|+++++.++...   ..+...          
T Consensus       138 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~~~----------  206 (408)
T TIGR01733       138 VVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVE-EIFGTLLAGATLVVPPEDEERDAALLAAL----------  206 (408)
T ss_pred             EEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHH-HHHHHHhCCCEEEEcChhhccCHHHHHHH----------
Confidence            9999999999999998888999999999999999999986 69999999999999987654   344444          


Q ss_pred             ccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhC-CcccccccCccccch
Q 013869          265 RAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG-HRLLERYGMTEFVMA  343 (435)
Q Consensus       265 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~-~~l~~~YG~tE~~~~  343 (435)
                      ++++++|.+.++|.+++.+++...           ..++++|.+++||+++++++++.|.+.++ +.+++.||+||++.+
T Consensus       207 ~~~~~~t~l~~~p~~~~~l~~~~~-----------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~  275 (408)
T TIGR01733       207 IAEHPVTVLNLTPSLLALLAAALP-----------PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVW  275 (408)
T ss_pred             HHHcCceEEEeCHHHHHHHHHhhh-----------hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEE
Confidence            666899999999999999987522           45789999999999999999999999997 899999999999876


Q ss_pred             hccC-CC--CCC--CCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccccccCCchhcccccccC------C--
Q 013869          344 ISNP-LR--GAR--KAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTAD------G--  409 (435)
Q Consensus       344 ~~~~-~~--~~~--~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~------g--  409 (435)
                      ++.. ..  ...  ...++|+|.++++++|+|+++...+.+ .|||+++|+.++.||+++++.+.+.|..+      |  
T Consensus       276 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~  355 (408)
T TIGR01733       276 STATLVDADDAPRESPVPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGAR  355 (408)
T ss_pred             EEEEEcCccccCCccccccCcccCCceEEEECCCCCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCce
Confidence            6421 11  111  267899999999999999888776666 79999999999999999999998887443      2  


Q ss_pred             ccccCceEEEcCCccEEEecccccCC
Q 013869          410 FFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       410 ~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ||+|||+|++|++|++++.||.+|+|
T Consensus       356 ~~~TGDl~~~d~~g~~~~~gR~~~~i  381 (408)
T TIGR01733       356 LYRTGDLVRYLPDGNLEFLGRIDDQV  381 (408)
T ss_pred             EEECCceEEEcCCCCEEEeeccCCEE
Confidence            99999999999999999999999975

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.2e-49  Score=393.97  Aligned_cols=397  Identities=20%  Similarity=0.267  Sum_probs=307.8

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      |+..+.|.+.++.+|+++|++..+.++||+||.++++++|.+|.+                 .|+++||+|+++++|+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~~L~~~~~~~a~~L~~-----------------~g~~~g~~v~i~~~~~~~   80 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALAR-----------------RGIGRGDTVAVLLPNIPA   80 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEECCeEEEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEECCCchH
Confidence            567889999999999999999999999999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCc-cccCCCCCCCC---------
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FSLIPPVPNVS---------  150 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------  150 (435)
                      ++++++||+++|++++|+++.++.+++..+++.++++.++++++..+.+.......+.. ...+.......         
T Consensus        81 ~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (545)
T PRK08162         81 MVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGAL  160 (545)
T ss_pred             HHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccccCCCcccc
Confidence            99999999999999999999999999999999999999999998877766544332221 11111110000         


Q ss_pred             Cccccccc-hhh-hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHH
Q 013869          151 SETTVFDQ-SQA-EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN  228 (435)
Q Consensus       151 ~~~~~~~~-~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~  228 (435)
                      ........ .+. ......+.++.++++|||||||.||+|.++|+++..........+.+..++++++.+|++|..++..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~  240 (545)
T PRK08162        161 DYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCF  240 (545)
T ss_pred             cHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHH
Confidence            00000000 000 0111223457899999999999999999999998777666666677888899999999999998765


Q ss_pred             HHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEE
Q 013869          229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM  308 (435)
Q Consensus       229 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i  308 (435)
                      .++ ....|++.++...+++..+++.          ++++++|++.++|+++..|++....        ....+...+.+
T Consensus       241 ~~~-~~~~~g~~~~~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~~~~~  301 (545)
T PRK08162        241 PWT-VAARAGTNVCLRKVDPKLIFDL----------IREHGVTHYCGAPIVLSALINAPAE--------WRAGIDHPVHA  301 (545)
T ss_pred             HHH-HHHHccEEEEeCCCCHHHHHHH----------HHHcCCeEEEechHHHHHHHhCccc--------cccCCccceEE
Confidence            444 3445666666677889998888          5669999999999999999875321        11233456677


Q ss_pred             EecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCC-----------CCCCCccceecC-CCeEEEecC-CCCC
Q 013869          309 MCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-----------ARKAGTVGNPLP-GVQVKIAED-ESGS  375 (435)
Q Consensus       309 ~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~-----------~~~~~~~G~p~~-~~~~~i~d~-~~~~  375 (435)
                      +++|+.++.++.+.+.+. +.++++.||+||+++.++.....           .....+.|.+.+ +..++|+|+ ++..
T Consensus       302 ~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~  380 (545)
T PRK08162        302 MVAGAAPPAAVIAKMEEI-GFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQP  380 (545)
T ss_pred             EECCCCCCHHHHHHHHHh-CCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcc
Confidence            899999999999998774 89999999999986433321110           011245566655 345788885 4555


Q ss_pred             CCC--c-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          376 DAA--G-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       376 ~~~--~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      .+.  + .|||+++|+.++.||+++++.+...|. +|||+|||+|++|+||+++++||.+|+|
T Consensus       381 ~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~-~g~~~TGDl~~~d~dg~l~~~GR~~~~i  442 (545)
T PRK08162        381 VPADGETIGEIMFRGNIVMKGYLKNPKATEEAFA-GGWFHTGDLAVLHPDGYIKIKDRSKDII  442 (545)
T ss_pred             cCCCCCceeEEEEecCcchhhhcCChhhhHHHhh-CCCcccCceEEEcCCccEEEEecccceE
Confidence            543  2 599999999999999999999998884 7899999999999999999999999875

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.1e-48  Score=389.28  Aligned_cols=382  Identities=24%  Similarity=0.338  Sum_probs=304.0

Q ss_pred             eEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEe
Q 013869           18 VAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVP   97 (435)
Q Consensus        18 ~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~   97 (435)
                      .|++..++.+||.||.++++++|++|.+.                 |+++|++|+++++|+++++++++||+++|+++++
T Consensus         3 ~~~~~~~~~~Ty~el~~~~~~la~~l~~~-----------------g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~   65 (509)
T PRK12406          3 ATIISGDRRRSFDELAQRAARAAGGLAAL-----------------GVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVP   65 (509)
T ss_pred             eEEEECCeeecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence            46778889999999999999999999994                 9999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCC--------------Cccccccch-hhh
Q 013869           98 LALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS--------------SETTVFDQS-QAE  162 (435)
Q Consensus        98 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~-~~~  162 (435)
                      +++..+.+++.++++.+++++++++......+....... .............              ......... ...
T Consensus        66 l~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (509)
T PRK12406         66 VNWHFKPEEIAYILEDSGARVLIAHADLLHGLASALPAG-VTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE  144 (509)
T ss_pred             cCcccCHHHHHHHHhccCCcEEEEccchhhhhhhhhhcc-cceeecccccccccccccccccccCCCCccCHHHHhcccC
Confidence            999999999999999999999999987766543332111 0010000000000              000000000 001


Q ss_pred             hccCCCCCCcEEEEecCCCCCCCceEEeehHH---HHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCE
Q 013869          163 KMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS---IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (435)
Q Consensus       163 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~---l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~  239 (435)
                      +......+++++++|||||||.||+|.++|..   +..........+++.++++++...|++|..+... .+.++..|++
T Consensus       145 ~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~  223 (509)
T PRK12406        145 PYDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAY-GLRAGRLGGV  223 (509)
T ss_pred             ccCCCCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHH-HHHHHhhheE
Confidence            12234578999999999999999999987654   3444444556678889999999999999988765 4557889999


Q ss_pred             EEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHH
Q 013869          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (435)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l  319 (435)
                      +++.+.+++..+++.          ++++++|.+.++|+++..+++..+.      .....+++++|.++.||+++++++
T Consensus       224 ~~~~~~~~~~~~~~~----------l~~~~~t~~~~~P~~~~~l~~~~~~------~~~~~~~~~l~~v~~gg~~~~~~~  287 (509)
T PRK12406        224 LVLQPRFDPEELLQL----------IERHRITHMHMVPTMFIRLLKLPEE------VRAKYDVSSLRHVIHAAAPCPADV  287 (509)
T ss_pred             EEEccCCCHHHHHHH----------HHHcCCeEEEccHHHHHHHHhCchh------hcccCCCCceeEEEEcCCCCCHHH
Confidence            999998888888888          5669999999999999999864321      112235789999999999999999


Q ss_pred             HHHHHHHhCCcccccccCccccchhccCCC-CCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccc-cccC
Q 013869          320 MQQWETITGHRLLERYGMTEFVMAISNPLR-GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFK-EYWK  396 (435)
Q Consensus       320 ~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~-gy~~  396 (435)
                      ++.+.+.++..+++.||+||++.+++.... ....++++|+|.++++++++|++++.++.+ .|||+++|+.++. ||++
T Consensus       288 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~~~y~~  367 (509)
T PRK12406        288 KRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHN  367 (509)
T ss_pred             HHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEECCCCCCCCCCCceEEEEECCccccccccC
Confidence            999999999999999999999876554322 234567899999999999999988887666 7999999998875 9999


Q ss_pred             CchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          397 LPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       397 ~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +++.+...+ .+|||+|||+|++++||++++.||.+|+|
T Consensus       368 ~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~d~i  405 (509)
T PRK12406        368 KPEKRAEID-RGGFITSGDVGYLDADGYLFLCDRKRDMV  405 (509)
T ss_pred             Cchhccccc-CCCCeEEccEEEEcCCceEEEeecccceE
Confidence            988877665 58999999999999999999999999975

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.6e-49  Score=391.56  Aligned_cols=382  Identities=21%  Similarity=0.255  Sum_probs=304.9

Q ss_pred             eEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEe
Q 013869           18 VAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVP   97 (435)
Q Consensus        18 ~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~   97 (435)
                      .++...++.+||.||.++++++|++|.+.                 |+++||+|+++++|+++++++++||+++|++++|
T Consensus         3 ~~~~~~~~~~ty~el~~~v~~~a~~L~~~-----------------g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~   65 (502)
T PRK08276          3 VIMAPSGEVVTYGELEARSNRLAHGLRAL-----------------GLREGDVVAILLENNPEFFEVYWAARRSGLYYTP   65 (502)
T ss_pred             eEecCCCcEEEHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEe
Confidence            45556789999999999999999999994                 9999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC--ccccCCCCCCCCCccccccch-hhhhccCCCCCCcEE
Q 013869           98 LALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSETTVFDQS-QAEKMDGQRGEDPAL  174 (435)
Q Consensus        98 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  174 (435)
                      +++.++.+++.++++.++++++++++.....+.........  ....+... ............ ..........++.++
T Consensus        66 l~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~  144 (502)
T PRK08276         66 INWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAG-PVPGFRSYEEALAAQPDTPIADETAGAD  144 (502)
T ss_pred             cccccCHHHHHHHHhcCCCCEEEEccchhhHHHHHhhhccccccEEEEeCC-CCCccccHHHHHhcCCCCCCCCCCcceE
Confidence            99999999999999999999999999887766555443321  11111100 000000000000 001112235577899


Q ss_pred             EEecCCCCCCCceEEeehHHHHHHH------HHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcch
Q 013869          175 IVYTSGTTGKPKGVVHTHKSIDAQV------QMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV  248 (435)
Q Consensus       175 i~~TSGtTG~pK~v~~t~~~l~~~~------~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~  248 (435)
                      ++|||||||.||+|.++|.++....      ............+++++..|++|..++.. .+.++..|+++++.+.+++
T Consensus       145 i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~  223 (502)
T PRK08276        145 MLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRF-GMSALALGGTVVVMEKFDA  223 (502)
T ss_pred             EEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHH-HHHHHhccceEEEcCCCCH
Confidence            9999999999999999987754332      11122222346789999999999999875 5678999999999999999


Q ss_pred             hHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhC
Q 013869          249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG  328 (435)
Q Consensus       249 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~  328 (435)
                      ..+++.          ++++++|++.++|+++..+++..+..      ....+++++|.++++|++++.++++.+.+.++
T Consensus       224 ~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~  287 (502)
T PRK08276        224 EEALAL----------IERYRVTHSQLVPTMFVRMLKLPEEV------RARYDVSSLRVAIHAAAPCPVEVKRAMIDWWG  287 (502)
T ss_pred             HHHHHH----------HHHhCCeEEEehHHHHHHHHhCcccc------CCCCCcccceEEEecCCCCCHHHHHHHHHHhC
Confidence            888888          66689999999999999998753211      11235789999999999999999999999999


Q ss_pred             CcccccccCccccchhccCC-CCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccccccCCchhcccccc
Q 013869          329 HRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFT  406 (435)
Q Consensus       329 ~~l~~~YG~tE~~~~~~~~~-~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~  406 (435)
                      ..+++.||+||++.+++... ......+++|+|+ +++++++|+++..++.+ .|||+++|+.++.||+++++.+...+.
T Consensus       288 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~  366 (502)
T PRK08276        288 PIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILDEDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARN  366 (502)
T ss_pred             cHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEECCCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhc
Confidence            99999999999987544322 2234567899999 88999999888877666 799999999999999999999999998


Q ss_pred             cCCccccCceEEEcCCccEEEecccccCC
Q 013869          407 ADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       407 ~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++|||+|||+|+++++|.+++.||.+|+|
T Consensus       367 ~~~~~~TGD~~~~~~~g~~~~~GR~~~~i  395 (502)
T PRK08276        367 PHGWVTVGDVGYLDEDGYLYLTDRKSDMI  395 (502)
T ss_pred             CCCceeecceEEEcCCcCEEEeccCcceE
Confidence            78999999999999999999999999875

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.5e-48  Score=389.94  Aligned_cols=391  Identities=23%  Similarity=0.325  Sum_probs=306.7

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC--CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCH
Q 013869            2 EVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~   79 (435)
                      ++.+.|.+.|..+|+.+++.+.  .+.+||.||+++++++|++|.+.                 |+++||+|+|+++|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~-----------------g~~~gd~V~l~~~~~~   65 (545)
T PRK07768          3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAA-----------------GVGPGDAVAVLAGAPV   65 (545)
T ss_pred             hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHh-----------------CCCCCCEEEEECCCch
Confidence            4778899999999999999764  46899999999999999999994                 9999999999999999


Q ss_pred             HHHHHHHHHHHhCCeEEeCCCCCCHHHH-------HHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCc
Q 013869           80 EFVAGVLGTWFSGCIAVPLALSYPESEL-------LHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSE  152 (435)
Q Consensus        80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (435)
                      +++++++||+++|++++++++..+.+++       .++++.++++.+++++.....+...... ...+..+   .++.. 
T Consensus        66 ~~~~~~la~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~---~~l~~-  140 (545)
T PRK07768         66 EIAPTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEK-GIRVLTV---ADLLA-  140 (545)
T ss_pred             HHHHHHHHHHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhccc-CCceeeh---hhhcc-
Confidence            9999999999999999999988776543       4567889999999988765544332111 1111111   11100 


Q ss_pred             cccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCC-CeeEEeecchhhhHHHHHHH
Q 013869          153 TTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA-DQFLHCLPLHHVHGLFNALL  231 (435)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~-~~~l~~~pl~~~~g~~~~~~  231 (435)
                           ... .......++++++++|||||||.||+|.++|+++...+.......++..+ |++++.+|++|..++...++
T Consensus       141 -----~~~-~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~  214 (545)
T PRK07768        141 -----ADP-IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLT  214 (545)
T ss_pred             -----cCC-CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHH
Confidence                 000 01224567999999999999999999999999999988888888888876 89999999999999887778


Q ss_pred             HHHHcCCEEEEcCCc----chhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEE
Q 013869          232 APLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL  307 (435)
Q Consensus       232 ~~l~~G~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~  307 (435)
                      .++..|+++++.++.    ++..++..          +.+++++++...|..+..+.+..++...    ....+++++|.
T Consensus       215 ~~l~~g~~~v~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~lr~  280 (545)
T PRK07768        215 VPMYFGAELVKVTPMDFLRDPLLWAEL----------ISKYRGTMTAAPNFAYALLARRLRRQAK----PGAFDLSSLRF  280 (545)
T ss_pred             HHHHCCceEEEeCHHHHHHhHHHHHHH----------HHHhCCEEEECchHHHHHHHHHHhcccc----ccCCCchheee
Confidence            889999999988753    34444444          6779999998888877776654322110    11245789999


Q ss_pred             EEecCCCCCHHHHHHHHHH---hCC---cccccccCccccchhccCCCC--------------------------CCCCC
Q 013869          308 MMCGSSALPLPVMQQWETI---TGH---RLLERYGMTEFVMAISNPLRG--------------------------ARKAG  355 (435)
Q Consensus       308 i~~~G~~l~~~l~~~~~~~---~~~---~l~~~YG~tE~~~~~~~~~~~--------------------------~~~~~  355 (435)
                      ++.+|+++++++.+.|.+.   ++.   .+++.||+||++..++.....                          .....
T Consensus       281 ~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (545)
T PRK07768        281 ALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLA  360 (545)
T ss_pred             EEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEE
Confidence            9999999999999999875   455   499999999998654321111                          12345


Q ss_pred             ccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccC
Q 013869          356 TVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIY  434 (435)
Q Consensus       356 ~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~  434 (435)
                      ++|+|.++++++++|++++.++.+ .|||+++|+.++.||++++... ..++.+|||+|||+|++++||+++++||.+|+
T Consensus       361 ~~G~~~~g~~~~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~-~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~  439 (545)
T PRK07768        361 TLGPPLPGLEVRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGFI-PAQDADGWLDTGDLGYLTEEGEVVVCGRVKDV  439 (545)
T ss_pred             eccCCCCCCEEEEECCCCCCCCCCCEEEEEEccCcccccccCCCCCc-ccccCCCeeeccceEEEecCCEEEEEccccce
Confidence            899999999999999888877665 7999999999999999865443 33446789999999999999999999999997


Q ss_pred             C
Q 013869          435 F  435 (435)
Q Consensus       435 i  435 (435)
                      |
T Consensus       440 i  440 (545)
T PRK07768        440 I  440 (545)
T ss_pred             E
Confidence            5

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=1.3e-48  Score=359.45  Aligned_cols=397  Identities=21%  Similarity=0.222  Sum_probs=310.5

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCC--cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQ--KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~--~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~   79 (435)
                      +++++|..+++++|+|+|+++++  +++||+|+.+.++++|+.|..+                 +++.||.|||.++|.+
T Consensus        78 ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~-----------------~l~~GD~VAL~men~p  140 (649)
T KOG1179|consen   78 TIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAE-----------------GLKAGDVVALLMENRP  140 (649)
T ss_pred             cHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHh-----------------hcccCCEEEEecCCCh
Confidence            68999999999999999999977  6999999999999999999996                 8999999999999999


Q ss_pred             HHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCc-cc--cCCCCCCCCCccccc
Q 013869           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK-FS--LIPPVPNVSSETTVF  156 (435)
Q Consensus        80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~  156 (435)
                      +|+..+|+++++|++.+.||++...+.+.|.++.+++++++++++....+.++.+..... +.  ...............
T Consensus       141 efv~lWlGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~g~~~L~  220 (649)
T KOG1179|consen  141 EFVALWLGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPDGIESLL  220 (649)
T ss_pred             hHHHHHHhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCchHHHHH
Confidence            999999999999999999999999999999999999999999999998877773332211 11  111111111111111


Q ss_pred             --------cchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHH
Q 013869          157 --------DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN  228 (435)
Q Consensus       157 --------~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~  228 (435)
                              ++.+..........++++++|||||||.||+.+++|..+......+...++++++|++..++|++|..+.+.
T Consensus       221 ~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~il  300 (649)
T KOG1179|consen  221 AKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGIL  300 (649)
T ss_pred             HhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHH
Confidence                    111112344667789999999999999999999999999888888889999999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEE
Q 013869          229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM  308 (435)
Q Consensus       229 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i  308 (435)
                      ++.+++..|+|+++..+|++.++|+.          ..+|++|+...+-.+++-|++.+....+          +.-+.=
T Consensus       301 Gi~~~l~~GaT~VlrkKFSAS~FW~D----------C~k~~~Tv~QYIGElcRYLl~~p~~~~e----------r~HkVR  360 (649)
T KOG1179|consen  301 GIGGCLLHGATVVLRKKFSASNFWDD----------CRKYNVTVIQYIGELCRYLLNQPPSPEE----------RQHKVR  360 (649)
T ss_pred             HHHHHHhcCceEEEecccchhhhHHH----------HHHhCCeeeehHHHHHHHHHcCCCChhh----------cCceEE
Confidence            99999999999999999999999999          5669999999999999999987543221          122334


Q ss_pred             EecCCCCCHHHHHHHHHHhCCc-ccccccCccccchhccCCCCCCC---CCccceecCCCeEEEecCC---------CCC
Q 013869          309 MCGSSALPLPVMQQWETITGHR-LLERYGMTEFVMAISNPLRGARK---AGTVGNPLPGVQVKIAEDE---------SGS  375 (435)
Q Consensus       309 ~~~G~~l~~~l~~~~~~~~~~~-l~~~YG~tE~~~~~~~~~~~~~~---~~~~G~p~~~~~~~i~d~~---------~~~  375 (435)
                      +.-|..+.+++++.|.++|+.+ +.+.||+||......+.......   .+...+-+.-+++.-+|++         |-+
T Consensus       361 la~GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~C  440 (649)
T KOG1179|consen  361 LAYGNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNYDGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLC  440 (649)
T ss_pred             EEecCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeeecCccccccchhhhhhhccceEEEEecCCCCceeecCCceE
Confidence            4559999999999999999775 99999999987766654332211   1112333334444444433         322


Q ss_pred             --C-CCccceEEEe--cCCc---cccccCCchhccccc-----c-cCCccccCceEEEcCCccEEEecccccCC
Q 013869          376 --D-AAGVGEICVK--SPSL---FKEYWKLPKVTKDSF-----T-ADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       376 --~-~~~~Gel~v~--~~~~---~~gy~~~~~~~~~~~-----~-~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                        + +++.|.+.-+  ....   |.||.++...+++-.     . +|-||.|||+-.+|+.|++||.+|..|+|
T Consensus       441 i~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTF  514 (649)
T KOG1179|consen  441 IPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTF  514 (649)
T ss_pred             EECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCce
Confidence              2 3335654322  2233   899999666665443     2 24599999999999999999999999986

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-48  Score=411.28  Aligned_cols=383  Identities=16%  Similarity=0.219  Sum_probs=292.9

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +++.++|.++++++||++|++++++.+||+||.++++++|+.|.+                 +|+++||+|+|+++|+++
T Consensus       447 ~sl~~ll~~~a~~~pd~~Al~~~~~~lTY~eL~~ra~rlA~~L~~-----------------~Gv~~Gd~VaI~~~n~~e  509 (994)
T PRK07868        447 ISLGRIIAEQARDAPKGEFLLFDGRVHTYEAVNRRINNVVRGLIA-----------------VGVRQGDRVGVLMETRPS  509 (994)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEeCCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCCHH
Confidence            578999999999999999999999999999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCC----------CCC
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVP----------NVS  150 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~  150 (435)
                      ++++++||+++|++++|++|.   +++.++++.++++++|++++..+.+...    ...+..+....          ...
T Consensus       510 ~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~----~~~iiv~~~~~~~~~~~~~~~~~~  582 (994)
T PRK07868        510 ALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL----PGRVLVLGGGESRDLDLPDDADVI  582 (994)
T ss_pred             HHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc----CceEEEecCCccccccCCcchhhh
Confidence            999999999999999999985   6789999999999999998776654332    11122111000          000


Q ss_pred             Cccccccch---hh-hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHH
Q 013869          151 SETTVFDQS---QA-EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL  226 (435)
Q Consensus       151 ~~~~~~~~~---~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~  226 (435)
                      .........   +. .......++++++|+|| ||||.||++.++|.+...........+++.++|++++.+|++|..++
T Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl  661 (994)
T PRK07868        583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGL  661 (994)
T ss_pred             hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHH
Confidence            000000000   00 00112235899999998 57777888888887765555555566788899999999999999998


Q ss_pred             HHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccE
Q 013869          227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLR  306 (435)
Q Consensus       227 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr  306 (435)
                      ...++.++..|+++++.+.+++..+++.          |+++++|++.++|+++..|++...        ....+++++|
T Consensus       662 ~~~l~~~l~gG~~vvl~~~~~~~~~~~~----------I~~~~vT~~~~~Ps~l~~L~~~~~--------~~~~~~~slr  723 (994)
T PRK07868        662 LVSLGGAVVGGSRIALSRGLDPDRFVQE----------VRQYGVTVVSYTWAMLREVVDDPA--------FVLHGNHPVR  723 (994)
T ss_pred             HHHHHHHhccceEEEecCCCCHHHHHHH----------HHHhCCcEEEeHHHHHHHHHhCcC--------CccCCCCceE
Confidence            7656677777788888888999999888          667999999999999999987421        1223567899


Q ss_pred             EEEecCCCCCHHHHHHHHHHhC-CcccccccCccccchhccCCCCCCCCCccceecCCC-eEEEe-----------cCCC
Q 013869          307 LMMCGSSALPLPVMQQWETITG-HRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGV-QVKIA-----------EDES  373 (435)
Q Consensus       307 ~i~~~G~~l~~~l~~~~~~~~~-~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~-----------d~~~  373 (435)
                      .++  |+.++++++++|.+.|+ .++++.||+||++.......  ..+.+++|+|++|+ +++|.           |++|
T Consensus       724 ~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~--~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G  799 (994)
T PRK07868        724 LFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANVS--GAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRG  799 (994)
T ss_pred             EEe--cCCCCHHHHHHHHHHhCchheeeeeecccccccccccC--CCCCcccCCccCCCCceeEEEecCcCCceeecCCc
Confidence            776  34599999999999996 78999999999876544321  24567999999998 66654           3444


Q ss_pred             --CCCCC-ccceEEEecCCccccccCCchhcc--cccc-cCCccccCceEEEcCCccEEEecccccCC
Q 013869          374 --GSDAA-GVGEICVKSPSLFKEYWKLPKVTK--DSFT-ADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       374 --~~~~~-~~Gel~v~~~~~~~gy~~~~~~~~--~~~~-~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                        +..+. +.|||+++++..    + +|+.+.  ..|. ++|||+|||+|++|+||+|+|+||.||+|
T Consensus       800 ~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~I  862 (994)
T PRK07868        800 FVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVI  862 (994)
T ss_pred             eEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEE
Confidence              33443 479999999753    3 343322  2242 47999999999999999999999999986

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=1.6e-48  Score=380.59  Aligned_cols=329  Identities=22%  Similarity=0.291  Sum_probs=268.6

Q ss_pred             ccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccC-CCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCH
Q 013869           26 SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPE  104 (435)
Q Consensus        26 ~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~-~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~  104 (435)
                      -+.|+||.++++++|++|++.                 |+ +.|++|+++++|+++++++++||+++|++++|+++.++.
T Consensus        19 ~~~~~el~~~~~~~a~~L~~~-----------------g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~   81 (452)
T PRK07445         19 GYNSQRFYQLAQQLYLQLQQL-----------------ATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQ   81 (452)
T ss_pred             ecChHHHHHHHHHHHHHHHHh-----------------cCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCH
Confidence            468999999999999999995                 77 579999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhhhhccCCCCCCcEEEEecCCCCCC
Q 013869          105 SELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGK  184 (435)
Q Consensus       105 ~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  184 (435)
                      +++.++++.+++++++++.+.....             .   ....       .    ......+++.++++|||||||.
T Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~-------------~---~~~~-------~----~~~~~~~~~~~~i~~TSGTTG~  134 (452)
T PRK07445         82 QEWQQVLNLVQPDQIWGLDQLKLSH-------------P---PPLP-------S----QGILPNLETGWIMIPTGGSSGQ  134 (452)
T ss_pred             HHHHHHHHhcCCCEEEecCcccccc-------------C---CCCC-------c----cccCCCCCCcEEEEeCCCCCCC
Confidence            9999999999999999987643210             0   0000       0    0112356899999999999999


Q ss_pred             CceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCC
Q 013869          185 PKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGN  264 (435)
Q Consensus       185 pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (435)
                      ||+|.+||+++..++......+++.+ ++.++++|++|.+|+. .++.++..|+++++.+..........          
T Consensus       135 PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~-~~~~~l~~G~t~v~~~~~~~~~~~~~----------  202 (452)
T PRK07445        135 IRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLM-QFMRSFLTGGKLVILPYKRLKSGQEL----------  202 (452)
T ss_pred             CcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHH-HHHHHHHcCCeEEEcChHhccchhhh----------
Confidence            99999999999988888777776654 4678899999999986 58889999999999874333322222          


Q ss_pred             ccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchh
Q 013869          265 RAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAI  344 (435)
Q Consensus       265 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~  344 (435)
                      ..++++|++.++|+++..+++.           ....++++|.+++||+++++++.+++.+ ++.++++.||+||++..+
T Consensus       203 ~~~~~~t~~~~vP~~l~~l~~~-----------~~~~l~~l~~i~~gG~~l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~  270 (452)
T PRK07445        203 PPNPSDFFLSLVPTQLQRLLQL-----------RPQWLAQFRTILLGGAPAWPSLLEQARQ-LQLRLAPTYGMTETASQI  270 (452)
T ss_pred             hhhcCceEEEehHHHHHHHHhh-----------ChhhhhcceEEEECCccCCHHHHHHHHh-cCCeEecCcchhhhcccc
Confidence            3357899999999999998762           1124688999999999999999998876 489999999999987544


Q ss_pred             ccCCC--CCCCCCccceecCCCeEEEecCCCCCCCCccceEEEecCCccccccCCchhcccccccCCccccCceEEEcCC
Q 013869          345 SNPLR--GARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDED  422 (435)
Q Consensus       345 ~~~~~--~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~d  422 (435)
                      +....  ......++|+|.|+++++|+       ++..|||+++|+.++.||++++.      ..+|||+|||+|++|+|
T Consensus       271 ~~~~~~~~~~~~~~~G~~~p~~~v~i~-------~g~~Gel~v~g~~~~~gY~~~~~------~~~g~~~TGDl~~~d~d  337 (452)
T PRK07445        271 ATLKPDDFLAGNNSSGQVLPHAQITIP-------ANQTGNITIQAQSLALGYYPQIL------DSQGIFETDDLGYLDAQ  337 (452)
T ss_pred             cccCchhhccCCCcCCccCCCCeEEEc-------CCCcceEEEeCCccchhhcCCcc------CCCCEEECCCEEEEcCC
Confidence            32211  12345689999999999997       23359999999999999997532      24789999999999999


Q ss_pred             ccEEEecccccCC
Q 013869          423 GYYIILGRKGIYF  435 (435)
Q Consensus       423 G~l~~~gR~~d~i  435 (435)
                      |++++.||.||+|
T Consensus       338 G~l~~~GR~dd~I  350 (452)
T PRK07445        338 GYLHILGRNSQKI  350 (452)
T ss_pred             CCEEEEeecCCEE
Confidence            9999999999976

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1e-46  Score=368.26  Aligned_cols=345  Identities=28%  Similarity=0.417  Sum_probs=282.8

Q ss_pred             CHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHH
Q 013869           28 SYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESEL  107 (435)
Q Consensus        28 Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l  107 (435)
                      ||+||.++++++|..|.+                 .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++
T Consensus         1 Ty~~l~~~~~~~a~~l~~-----------------~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~   63 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKA-----------------QGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENER   63 (436)
T ss_pred             CHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHH
Confidence            899999999999999999                 499999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhhhhccCCCCCCcEEEEecCCCCCCCce
Q 013869          108 LHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG  187 (435)
Q Consensus       108 ~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~  187 (435)
                      ..++++++++.+++++........          .. ......    ...............+++++++|||||||.||+
T Consensus        64 ~~~~~~~~~~~~i~~~~~~~~~~~----------~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~  128 (436)
T TIGR01923        64 TNQLEDLDVQLLLTDSLLEEKDFQ----------AD-SLDRIE----AAGRYETSLSASFNMDQIATLMFTSGTTGKPKA  128 (436)
T ss_pred             HHHHHhcCCCEEEEcCccccccee----------ec-chHhhh----hcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence            999999999999999864221000          00 000000    000000011224456899999999999999999


Q ss_pred             EEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccc
Q 013869          188 VVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAG  267 (435)
Q Consensus       188 v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  267 (435)
                      |.++|+++...+......+++.++++++...|++|..++. .++.++..|+++++.+.++  .+++.          +.+
T Consensus       129 v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~~~~--~~~~~----------l~~  195 (436)
T TIGR01923       129 VPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLS-ILFRWLIEGATLRIVDKFN--QLLEM----------IAN  195 (436)
T ss_pred             EEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHH-HHHHHHhcCceEEecchHH--HHHHH----------HHH
Confidence            9999999999999888888999999999999999999886 5899999999999998764  55565          667


Q ss_pred             cccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccC
Q 013869          268 EAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNP  347 (435)
Q Consensus       268 ~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~  347 (435)
                      +++|++.++|+++..+++....            .+++|.++++|+++++++.+.+.+ +++++++.||+||++..++..
T Consensus       196 ~~~t~~~~~P~~l~~l~~~~~~------------~~~l~~~~~~G~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~  262 (436)
T TIGR01923       196 ERVTHISLVPTQLNRLLDEGGH------------NENLRKILLGGSAIPAPLIEEAQQ-YGLPIYLSYGMTETCSQVTTA  262 (436)
T ss_pred             hCCeEEEeHHHHHHHHHhCcCC------------CCceEEEEECCCCCCHHHHHHHHH-hCCceeeEecCCccchhccCc
Confidence            9999999999999999875221            167999999999999999998876 499999999999998755432


Q ss_pred             CC-CCCCCCccceecCCCeEEEecCCCCCCCCccceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEE
Q 013869          348 LR-GARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYI  426 (435)
Q Consensus       348 ~~-~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~  426 (435)
                      .. ......++|.|++++++++.+++..    +.|||+++|+.++.||+++++.+...+ .+|||+|||+|++++||+++
T Consensus       263 ~~~~~~~~~~~G~~~~~~~~~i~~~~~~----~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~dg~~~  337 (436)
T TIGR01923       263 TPEMLHARPDVGRPLAGREIKIKVDNKE----GHGEIMVKGANLMKGYLYQGELTPAFE-QQGWFNTGDIGELDGEGFLY  337 (436)
T ss_pred             CccccccccCCCccCCCcEEEEEeCCCC----CceEEEEECCccchhhCCChhhhhhhh-cCCCeeccceEEEcCCCCEE
Confidence            22 2222235999999999999443222    569999999999999999887776655 57999999999999999999


Q ss_pred             EecccccCC
Q 013869          427 ILGRKGIYF  435 (435)
Q Consensus       427 ~~gR~~d~i  435 (435)
                      +.||.+|+|
T Consensus       338 ~~GR~~d~i  346 (436)
T TIGR01923       338 VLGRRDDLI  346 (436)
T ss_pred             EeccccCeE
Confidence            999999975

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.2e-46  Score=359.63  Aligned_cols=396  Identities=25%  Similarity=0.372  Sum_probs=317.9

Q ss_pred             HHHhccc-CCCeeEEEeC------CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCH
Q 013869            7 AYKKGSM-ARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (435)
Q Consensus         7 ~~~~~~~-~p~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~   79 (435)
                      +.++.+. .++++|++.+      ...+||.|+.+++.++|+.|.+                 .|+++||+|++++|+.+
T Consensus        70 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~-----------------~g~~kGD~V~~~mPm~~  132 (626)
T KOG1175|consen   70 LDRHIKEKGGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRK-----------------CGLKKGDTVAIYMPMIP  132 (626)
T ss_pred             hhhhhhhcCCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHh-----------------cCCCCCcEEEEeccCCh
Confidence            3444333 4889999874      2348999999999999999997                 59999999999999999


Q ss_pred             HHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHH---------HHHHHhccCCccccCC------
Q 013869           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV---------LQNVASKSGAKFSLIP------  144 (435)
Q Consensus        80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~~~~~~~~~~------  144 (435)
                      +++++.+||.++|++.+++-..+++.++...++.++++++++.......         ..++............      
T Consensus       133 e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~  212 (626)
T KOG1175|consen  133 EAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVS  212 (626)
T ss_pred             HHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEe
Confidence            9999999999999999999999999999999999999999998744322         2222211111000000      


Q ss_pred             -CCCCCCCccccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHH-HHHHHHHHHHhccCCCCCeeEEeecchh
Q 013869          145 -PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLHCLPLHH  222 (435)
Q Consensus       145 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~-l~~~~~~~~~~~~~~~~~~~l~~~pl~~  222 (435)
                       ...+..-........+..++...+.+|+.+|+|||||||.||++.+++.. ++..+......+.++++|++.+.....|
T Consensus       213 ~~~~d~~~~~~~~~a~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GW  292 (626)
T KOG1175|consen  213 RRNRDLFWSLELKKASPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGW  292 (626)
T ss_pred             cccccccHHHHhhhcCCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCe
Confidence             00000000010111112225567789999999999999999999998865 5666666667778999999999999999


Q ss_pred             hhHHHHHHHHHHHcCCEEEEcCC--cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhh
Q 013869          223 VHGLFNALLAPLYAGATVEFMPK--FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS  300 (435)
Q Consensus       223 ~~g~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~  300 (435)
                      +.+.+..++++|.+|+++++.+.  +++...++.          +.+|++|+++..|+.++.+.+...+.      ....
T Consensus       293 i~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~----------v~k~~it~l~t~pt~~r~l~~~~~~~------~~~~  356 (626)
T KOG1175|consen  293 ITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKI----------LDKYKVTVLYTAPTAYRLLRRLGQED------VTSY  356 (626)
T ss_pred             eeccchhhhhhhhcCcEEEEEcCCCCChhhhhhh----------HhhcceEEEEeccHHHHHHHHhcccc------cccc
Confidence            99999889999999999999864  466677776          77899999999999999887754332      2223


Q ss_pred             hccccEEEEecCCCCCHHHHHHHHHHhCC-cccccccCccccchhccCCCCC--CCCCccceecCCCeEEEecCCCCCCC
Q 013869          301 AAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESGSDA  377 (435)
Q Consensus       301 ~l~~lr~i~~~G~~l~~~l~~~~~~~~~~-~l~~~YG~tE~~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~  377 (435)
                      ++++||.+.+.||++.++.++.|.+.++. +|++.||+||+|..+..+....  .++++.++|.+|+.+.|.|++|+..+
T Consensus       357 ~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~~~~  436 (626)
T KOG1175|consen  357 SLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGNELP  436 (626)
T ss_pred             ccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEECCCCCCcC
Confidence            44789999999999999999999999987 6999999999998888666655  78999999999999999999999987


Q ss_pred             C--ccceEEEecC---CccccccCCchhccccccc--CCccccCceEEEcCCccEEEecccccCC
Q 013869          378 A--GVGEICVKSP---SLFKEYWKLPKVTKDSFTA--DGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       378 ~--~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~--~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +  +.|+|+++.+   +.+++|++|++.....+..  .|||.|||.|++|+||+++++||.||+|
T Consensus       437 ~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDvi  501 (626)
T KOG1175|consen  437 PSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVI  501 (626)
T ss_pred             CCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccccc
Confidence            7  5799999973   7799999999965555544  7899999999999999999999999986

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=3.1e-46  Score=370.07  Aligned_cols=343  Identities=19%  Similarity=0.187  Sum_probs=256.7

Q ss_pred             eCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhh------HHHHHHHHhccCCccccCCC-CC
Q 013869           75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY------REVLQNVASKSGAKFSLIPP-VP  147 (435)
Q Consensus        75 ~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~~~~~-~~  147 (435)
                      ++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++..      .+.+.............+.. ..
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE   80 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence            589999999999999999999999999999999999999999999998643      12222221111111111100 00


Q ss_pred             --------CCCCccccc---cch-----hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCC
Q 013869          148 --------NVSSETTVF---DQS-----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA  211 (435)
Q Consensus       148 --------~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~  211 (435)
                              .........   ...     .........++++++|+|||||||.||||.+||++++.........+++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~  160 (499)
T PLN03051         81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPG  160 (499)
T ss_pred             ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCC
Confidence                    000000000   000     0001112356899999999999999999999999988776666666788899


Q ss_pred             CeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCC-cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccc
Q 013869          212 DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM  290 (435)
Q Consensus       212 ~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  290 (435)
                      |++++.+|++|..++. .++.++..|+++++.+. +++..+++.          |+++++|++.++|+++..|++.... 
T Consensus       161 d~~l~~~pl~h~~g~~-~~~~~l~~G~t~v~~~~~~~~~~~~~~----------i~~~~vt~~~~vP~~~~~l~~~~~~-  228 (499)
T PLN03051        161 DVVCWPTNLGWMMGPW-LLYSAFLNGATLALYGGAPLGRGFGKF----------VQDAGVTVLGLVPSIVKAWRHTGAF-  228 (499)
T ss_pred             CEEEEccCcceeeehH-HHHHHHHcCCEEEecCCCCCcHHHHHH----------HHHhCCcEEEeCHHHHHHHHhcCcc-
Confidence            9999999999999975 68899999999999874 677777777          6679999999999999998764210 


Q ss_pred             cHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHh--CCcccccccCccccchhc-cCCCCCCCCCccceecCCCeEE
Q 013869          291 DTELQAASASAAKQLRLMMCGSSALPLPVMQQWETIT--GHRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVK  367 (435)
Q Consensus       291 ~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~--~~~l~~~YG~tE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~  367 (435)
                           .....++++||.+++||+++++++.+.+.+.+  +.++++.||+||++..++ .......+.+++|+|.++++++
T Consensus       229 -----~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~  303 (499)
T PLN03051        229 -----AMEGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFV  303 (499)
T ss_pred             -----ccccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCCCccccCCCCCceEE
Confidence                 01223578999999999999999998777633  478999999999864332 2222233567899999999999


Q ss_pred             EecCCCCCCCCc---cceEEEecCCc--cccccCCchhccccccc--------CCccccCceEEEcCCccEEEecccccC
Q 013869          368 IAEDESGSDAAG---VGEICVKSPSL--FKEYWKLPKVTKDSFTA--------DGFFKTGDTGKQDEDGYYIILGRKGIY  434 (435)
Q Consensus       368 i~d~~~~~~~~~---~Gel~v~~~~~--~~gy~~~~~~~~~~~~~--------~g~~~TGD~g~~~~dG~l~~~gR~~d~  434 (435)
                      |+|++++.++.+   .|||+++|+.+  +.||++++ .++..+++        .+||+|||+|++|+||+|+|+||+||+
T Consensus       304 ivd~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~  382 (499)
T PLN03051        304 LLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDT  382 (499)
T ss_pred             EECCCCCCCCCCCCcceEEEEecCcCCCCccccCCc-ccceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCE
Confidence            999999887665   69999999976  58999765 33322221        127899999999999999999999998


Q ss_pred             C
Q 013869          435 F  435 (435)
Q Consensus       435 i  435 (435)
                      |
T Consensus       383 i  383 (499)
T PLN03051        383 M  383 (499)
T ss_pred             E
Confidence            6

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.3e-45  Score=355.75  Aligned_cols=317  Identities=22%  Similarity=0.277  Sum_probs=272.9

Q ss_pred             EEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHHHHHHHHHHHhCCeEEeC
Q 013869           19 AIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPL   98 (435)
Q Consensus        19 al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l   98 (435)
                      +|+..++++||+||.++++++|+.|..                  ++++|++|+++++|+++++++++|++++|++++|+
T Consensus         1 ~~~~~~~~~ty~el~~~~~~~a~~l~~------------------~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l   62 (414)
T PRK08308          1 MLIVNDEEYSKSDFDLRLQRYEEMEQF------------------QEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPI   62 (414)
T ss_pred             CeEecCceecHHHHHHHHHHHHHHHHc------------------CCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEec
Confidence            467788999999999999999999854                  88999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhhhhccCCCCCCcEEEEec
Q 013869           99 ALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYT  178 (435)
Q Consensus        99 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T  178 (435)
                      ++..+.+++..++++++++.+++++....               .   ..               .....++++++++||
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------------~---~~---------------~~~~~~~~~~~i~~T  109 (414)
T PRK08308         63 HPDTPKEAAIRMAKRAGCHGLLYGESDFT---------------K---LE---------------AVNYLAEEPSLLQYS  109 (414)
T ss_pred             CCCCCHHHHHHHHHhCCCCEEEecCcccc---------------c---cc---------------CCCCCCCCceEEEEC
Confidence            99999999999999999999999763100               0   00               012356889999999


Q ss_pred             CCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhh
Q 013869          179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRES  258 (435)
Q Consensus       179 SGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~  258 (435)
                      |||||.||+|.++|+++..++......++....++++..+|++|.+++...++.++..|+++++.+.+++...++.    
T Consensus       110 SGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~----  185 (414)
T PRK08308        110 SGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNI----  185 (414)
T ss_pred             CCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHH----
Confidence            9999999999999999999988888888888999999999999999987789999999999999999898888887    


Q ss_pred             cCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCc
Q 013869          259 YPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMT  338 (435)
Q Consensus       259 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~t  338 (435)
                            ++++++|.+.++|.++..+.+....            ..+++.++.+|+++++++.++|++. +.++++.||+|
T Consensus       186 ------l~~~~~t~~~~~P~~~~~l~~~~~~------------~~~l~~~~~~G~~l~~~~~~~~~~~-~~~~~~~YG~t  246 (414)
T PRK08308        186 ------LRNTPQHILYAVPLMLHILGRLLPG------------TFQFHAVMTSGTPLPEAWFYKLRER-TTYMMQQYGCS  246 (414)
T ss_pred             ------HHHhCCeEEEcCHHHHHHHHhcCCc------------cccccEEEEccCCCCHHHHHHHHHh-CChhhhccCcc
Confidence                  5668999999999999999874321            1358889999999999999999987 67899999999


Q ss_pred             cccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCccceEEEecCCccccccCCchhcccccccCCccccCceEE
Q 013869          339 EFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGK  418 (435)
Q Consensus       339 E~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~  418 (435)
                      |++.+.....  .....++|+|++++++++.++.     +..||+++++                   .++||+|||+|+
T Consensus       247 E~~~~~~~~~--~~~~~~~G~p~~~~~~~~~~~~-----~~~gel~v~~-------------------~~~~~~TGDl~~  300 (414)
T PRK08308        247 EAGCVSICPD--MKSHLDLGNPLPHVSVSAGSDE-----NAPEEIVVKM-------------------GDKEIFTKDLGY  300 (414)
T ss_pred             ccCCeeecCC--CCCCCccCccCCCeEEEEecCC-----CCCceEEEEc-------------------CCceEECCceEE
Confidence            9986544321  2355789999999999997532     2359999874                   258999999999


Q ss_pred             EcCCccEEEecccccCC
Q 013869          419 QDEDGYYIILGRKGIYF  435 (435)
Q Consensus       419 ~~~dG~l~~~gR~~d~i  435 (435)
                      +++||+++++||.+|+|
T Consensus       301 ~~~dg~l~~~GR~~~~i  317 (414)
T PRK08308        301 KSERGTLHFMGRMDDVI  317 (414)
T ss_pred             ECCCccEEEecccCCeE
Confidence            99999999999999975

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=1.6e-40  Score=351.38  Aligned_cols=372  Identities=13%  Similarity=0.095  Sum_probs=271.9

Q ss_pred             hHHHHHHHhcccCCCeeEEEeC---C--cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeC
Q 013869            2 EVFKAAYKKGSMARDSVAIRAD---Q--KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~---~--~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~   76 (435)
                      |+.+.|.+.++++|+++|+...   +  +++||+|+.++++++|+.|.+                 +|+++||+|+|+++
T Consensus       428 Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~-----------------lGV~~GDrVaIls~  490 (1452)
T PTZ00297        428 SLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLA-----------------LGVRPGDVIGVDCE  490 (1452)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence            6788999999999999999631   2  679999999999999999999                 59999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCC-C----CC
Q 013869           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPN-V----SS  151 (435)
Q Consensus        77 ~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~  151 (435)
                      |+++|+++.+||+++|+++||+++  +.+++.++++.++++++|++.+..+.+.......-..++.+..... .    ..
T Consensus       491 N~~Ewvia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~  568 (1452)
T PTZ00297        491 ASRNIVILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVAR  568 (1452)
T ss_pred             CCHHHHHHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcccCCcEEEEECCCcccccccccc
Confidence            999999999999999999999975  4678999999999999999988877666543321122222221000 0    00


Q ss_pred             --------cccc---ccchhhhhccCCCCCCcEEEEe---cCCCCCCCceEEeehHHHHHHHHHHHHhc---cCCCCCee
Q 013869          152 --------ETTV---FDQSQAEKMDGQRGEDPALIVY---TSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQF  214 (435)
Q Consensus       152 --------~~~~---~~~~~~~~~~~~~~~~~~~i~~---TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~  214 (435)
                              ....   ......+......++|++.|+|   ||||||.||||++||+|++.++.......   ...++|++
T Consensus       569 ~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~  648 (1452)
T PTZ00297        569 DLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLM  648 (1452)
T ss_pred             cCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEE
Confidence                    0000   0000011122346788999986   99999999999999999999998876532   35678999


Q ss_pred             EEeecchhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHH
Q 013869          215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL  294 (435)
Q Consensus       215 l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  294 (435)
                      +.++|++|..+.. ..+.++..|+++..   +++..+++.          +++++||++.++|.+|+.+.+.+.+.....
T Consensus       649 Ls~LPLaHI~er~-~~~~~l~~G~~I~~---~d~~~lled----------L~~~rPTv~~~VPrv~ekI~~~i~~~~~~~  714 (1452)
T PTZ00297        649 VHFTPFAMLFNRV-FVLGLFAHGSAVAT---VDAAHLQRA----------FVKFQPTILVAAPSLFSTSRLQLSRANERY  714 (1452)
T ss_pred             EEechHHHHHHHH-HHHHHHHcCCEEEe---CCHHHHHHH----------HHHHCCEEEEecHHHHHHHHHHHHHHhhhh
Confidence            9999999999975 47788999999874   456677777          666999999999999999987653221110


Q ss_pred             H----------------------------------HHhhhhccccEEEEecCC--CCCHHHHHHHHHHhCCcccccccCc
Q 013869          295 Q----------------------------------AASASAAKQLRLMMCGSS--ALPLPVMQQWETITGHRLLERYGMT  338 (435)
Q Consensus       295 ~----------------------------------~~~~~~l~~lr~i~~~G~--~l~~~l~~~~~~~~~~~l~~~YG~t  338 (435)
                      +                                  +.+......+|.+++||+  +++..+.      .++++...||.|
T Consensus       715 ~~~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~------~~i~i~~g~glT  788 (1452)
T PTZ00297        715 SAVYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLL------EHISVCYVPCLR  788 (1452)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHh------CCceEEEecceE
Confidence            0                                  011112267999999873  4443332      257788899999


Q ss_pred             cccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCccceEEEecCCccccccCCchhcccccccCCccccCceEE
Q 013869          339 EFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGK  418 (435)
Q Consensus       339 E~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~  418 (435)
                      |..  ..+... ..  ...|+|+|+++++|.+++.....+..|||+++       |+++|+.|.+.+  +||+       
T Consensus       789 E~~--~~~~~~-~~--~~~G~PlpgvEvKI~~~~E~~~~~~~GEIlvr-------~~kdpe~T~e~~--~gW~-------  847 (1452)
T PTZ00297        789 EVF--FLPSEG-VF--CVDGTPAPSLQVDLEPFDEPSDGAGIGQLVLA-------KKGEPRRTLPIA--AQWK-------  847 (1452)
T ss_pred             Eee--eecCCC-Cc--ccCCeecCceEEEEcccccccCCCCCCeEEEE-------ECCChHHHHHhh--CcCc-------
Confidence            943  222222 11  23399999999999974322112346999995       457888888743  5664       


Q ss_pred             EcCCccEEEecccccCC
Q 013869          419 QDEDGYYIILGRKGIYF  435 (435)
Q Consensus       419 ~~~dG~l~~~gR~~d~i  435 (435)
                        +||+|+|.||+||+|
T Consensus       848 --~dG~L~IidRkKdli  862 (1452)
T PTZ00297        848 --RDRTLRLLGPPLGIL  862 (1452)
T ss_pred             --cCCeEEEEeccccce
Confidence              689999999999986

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.4e-38  Score=323.69  Aligned_cols=386  Identities=25%  Similarity=0.368  Sum_probs=313.2

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      +++..|.+++...|++.|++..+.++||+|+..+++++|..|.+.                 |+++++.|+++.+.++++
T Consensus       228 ~i~~~f~~~a~~~p~~~a~~~~~~~lty~el~~~a~~la~~l~~~-----------------g~~~~~~V~i~~~rs~~~  290 (642)
T COG1020         228 TIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISL-----------------GVGPGETVAILADRSLEL  290 (642)
T ss_pred             hHHHHHHHHHHhCCCceeEecCCCcccHHHHHHHHHHHHHHHHHc-----------------CCCCCCeEEEEcCCCHHH
Confidence            588999999999999999999999999999999999999999994                 889999999999889999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhh
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (435)
                      ++.++|++++|..++|+++.++.+++.++++.+++..+++..........    .+.    + .......  .  .....
T Consensus       291 i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~----~~~----~-~~~~~~~--~--~~~~~  357 (642)
T COG1020         291 VVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVG----LPG----L-ALDDALS--E--IPDTD  357 (642)
T ss_pred             HHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEecccccccccc----CCc----c-ccccccc--c--CCccC
Confidence            99999999999999999999999999999999999999998432211000    000    0 0000000  0  00000


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEE
Q 013869          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (435)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~  241 (435)
                      +......+++.+|++|||||||.||||..+|+++.+...+....+.+...++++...++.+..+.+ .++.++..|++++
T Consensus       358 ~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~-~~f~~l~~G~~l~  436 (642)
T COG1020         358 PIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVF-EIFGALLEGARLV  436 (642)
T ss_pred             cccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHH-HHHHHHhCCCEEE
Confidence            002244568999999999999999999999999999888888888999999999999998887775 6999999999999


Q ss_pred             EcCCc---chhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHH
Q 013869          242 FMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (435)
Q Consensus       242 ~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~  318 (435)
                      +.+..   ++..+...          +.++++|.+..+|.++..++....      ........+.+|.+++||+.++..
T Consensus       437 ~~~~~~~~~~~~l~~~----------~~~~~vt~~~~~p~~~~~~~~~~~------~~~~~~~~~~lr~~~~gGe~l~~~  500 (642)
T COG1020         437 LAPALLQVDPAALLEL----------LEAQGITVLLLVPLLLRLLLLAAL------APDLISPCERLRQLLSGGEALPLA  500 (642)
T ss_pred             ecCccccCCHHHHHHH----------HHHcCCEEEEecHHHHHHHHhchh------hccccCCcccccEEEEcCCCCCHH
Confidence            99864   44444444          566899999999999999987410      001111233599999999999999


Q ss_pred             HHHHHHHHh--CCcccccccCccccchhccCCCCC--CCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCcccc
Q 013869          319 VMQQWETIT--GHRLLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKE  393 (435)
Q Consensus       319 l~~~~~~~~--~~~l~~~YG~tE~~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~g  393 (435)
                      +.+++....  ...+.+.||.||+...........  ....++|+|++|++++|.|...+.++.+ .||+++.|.+++.|
T Consensus       501 ~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild~~~~~~p~gv~gel~i~g~~~a~g  580 (642)
T COG1020         501 LVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALG  580 (642)
T ss_pred             HHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEECCCCCcCCCCCCeeeEECCcchhhh
Confidence            999998876  468999999999655433211111  1157899999999999999888888888 69999999999999


Q ss_pred             ccCCchhcccccccCCccccCceEEEcCCccEEEecccccC
Q 013869          394 YWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIY  434 (435)
Q Consensus       394 y~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~  434 (435)
                      |++.++.+...|..+.+|+|||++++.+||.+.+.||.|++
T Consensus       581 y~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~q  621 (642)
T COG1020         581 YLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQ  621 (642)
T ss_pred             hcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccce
Confidence            99999999999976559999999999999999999998875

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.5e-32  Score=259.47  Aligned_cols=224  Identities=29%  Similarity=0.446  Sum_probs=184.4

Q ss_pred             CCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEE---
Q 013869          166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF---  242 (435)
Q Consensus       166 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~---  242 (435)
                      ...++++++++|||||||.||+|.++|+++..........+  ...++++..+|++|..++. .++.++..|+++++   
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~-~~~~~l~~g~~~v~~~~  107 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQ-VLVRSVIAGSEPVELDV  107 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHH-HHHHHHHcCCeEEecCc
Confidence            34568999999999999999999999999988877655543  4567899999999999986 47888999999887   


Q ss_pred             cCCcchhHHHHHHHhhcCCCCCccccc--cceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHH
Q 013869          243 MPKFSVRGIWQRWRESYPVNGNRAGEA--ITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM  320 (435)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~i~~~~--~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~  320 (435)
                      ...+++..+++.+          ++++  .++...+|..+..++....         ....++++|.+++||+++++++.
T Consensus       108 ~~~~~~~~~~~~i----------~~~~~~~~~~~~~p~~l~~~~~~~~---------~~~~~~~l~~i~~gG~~l~~~~~  168 (358)
T PRK07824        108 SAGFDPTALPRAV----------AELGGGRRYTSLVPMQLAKALDDPA---------ATAALAELDAVLVGGGPAPAPVL  168 (358)
T ss_pred             CCCcCHHHHHHHH----------HHhCCCceEEEecHHHHHHHHhCcc---------ccCCcccceEEEECCCCCCHHHH
Confidence            3457788887774          4455  5566778888777665321         12357889999999999999999


Q ss_pred             HHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCccceEEEecCCccccccCCchh
Q 013869          321 QQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKV  400 (435)
Q Consensus       321 ~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~  400 (435)
                      +.+.+ +++++++.||+||++..+.          ..|+|++++++++.+          |||+++|+.++.||+++++.
T Consensus       169 ~~~~~-~~~~v~~~YG~TE~~~~~~----------~~G~~~~g~~v~i~~----------Gei~v~g~~~~~gY~~~~~~  227 (358)
T PRK07824        169 DAAAA-AGINVVRTYGMSETSGGCV----------YDGVPLDGVRVRVED----------GRIALGGPTLAKGYRNPVDP  227 (358)
T ss_pred             HHHHh-cCCcEEecccCCccCCCcC----------cCceeCCCCEEEecC----------CEEEEecCccccccCCCccc
Confidence            99886 4899999999999875432          358999999999954          99999999999999998874


Q ss_pred             cccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          401 TKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       401 ~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +  .|..+|||+|||+|++ ++|++++.||.||+|
T Consensus       228 ~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i  259 (358)
T PRK07824        228 D--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAI  259 (358)
T ss_pred             c--cccCCCceecccEEEE-eCCEEEEEeccCCeE
Confidence            3  4556789999999999 899999999999986

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.96  E-value=5.1e-26  Score=223.43  Aligned_cols=410  Identities=15%  Similarity=0.202  Sum_probs=294.5

Q ss_pred             hHHHHHHHhcccCCCeeEEEe------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEe
Q 013869            2 EVFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~   75 (435)
                      +|+|.|+..++.+||++|+..      ..+++||++|+.++.+++..|.++                .-+++||+|++++
T Consensus       771 ~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k----------------~~lk~Gd~V~Lmy  834 (1363)
T KOG3628|consen  771 TILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDK----------------GHLKAGDHVVLMY  834 (1363)
T ss_pred             HHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhc----------------ccCCCCCeEEEEc
Confidence            789999999999999999986      347999999999999999999987                5889999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCeEEeCCCCCC------HHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCC
Q 013869           76 KPSFEFVAGVLGTWFSGCIAVPLALSYP------ESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNV  149 (435)
Q Consensus        76 ~~~~~~~~~~lA~~~~G~~~v~l~~~~~------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (435)
                      ++++|++++++||+.+|.+++|+.|...      ...+..+++.+++.+|+++......+..-..........++.+...
T Consensus       835 ~~sie~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~  914 (1363)
T KOG3628|consen  835 PPSIEFVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVL  914 (1363)
T ss_pred             CChHHHHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcc
Confidence            9999999999999999999999987432      2357888999999999999987776654322221222222222222


Q ss_pred             CCcc--------ccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecch
Q 013869          150 SSET--------TVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLH  221 (435)
Q Consensus       150 ~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~  221 (435)
                      +...        .........++-...++.+|++-+..-++|.-.++.++|+.+++-.+...+...+.+...++.+.+.+
T Consensus       915 ~~~~~t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~  994 (1363)
T KOG3628|consen  915 PKLPETIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPY  994 (1363)
T ss_pred             cccchhhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCc
Confidence            1111        01111111223344568999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhh
Q 013869          222 HVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA  301 (435)
Q Consensus       222 ~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  301 (435)
                      ...|++...+..++.|.+.++.++.+.++...+|.+.      +++|++.-++.+=..+......++....... ....+
T Consensus       995 sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~------i~~~kvkDt~~~~~tln~c~~~l~t~~enl~-~~gnn 1067 (1363)
T KOG3628|consen  995 SGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQI------ISQYKVKDTYPTYSTLNLCQKGLETSVENLS-KRGNN 1067 (1363)
T ss_pred             cchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHH------HhcccccccchhHHHHHHHHhccccccchhh-hhhcc
Confidence            9999998899999999999999998888888888776      8889999999988888888776554333221 22233


Q ss_pred             ccccEEEEecCCCCCHHHHHHHHHHh---CC---cccccccCccccchhccCCCC----------------------CC-
Q 013869          302 AKQLRLMMCGSSALPLPVMQQWETIT---GH---RLLERYGMTEFVMAISNPLRG----------------------AR-  352 (435)
Q Consensus       302 l~~lr~i~~~G~~l~~~l~~~~~~~~---~~---~l~~~YG~tE~~~~~~~~~~~----------------------~~-  352 (435)
                      .++ ..++..-+.....+...|.+.|   ++   .+--.|++----.++.....+                      .. 
T Consensus      1068 ~s~-s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~a 1146 (1363)
T KOG3628|consen 1068 TSS-SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGA 1146 (1363)
T ss_pred             ccc-ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCC
Confidence            333 4444455566667777777766   22   122233332211122210000                      00 


Q ss_pred             ----CCCccceecCCCeEEEecCCCCC-C-CCccceEEEecCCccccccCCch-hccccc---------ccCCccccCce
Q 013869          353 ----KAGTVGNPLPGVQVKIAEDESGS-D-AAGVGEICVKSPSLFKEYWKLPK-VTKDSF---------TADGFFKTGDT  416 (435)
Q Consensus       353 ----~~~~~G~p~~~~~~~i~d~~~~~-~-~~~~Gel~v~~~~~~~gy~~~~~-~~~~~~---------~~~g~~~TGD~  416 (435)
                          .....|+..+++++.|++++.+- + .++.||||+.|.+-+.+|++-.+ .....|         .+.+|-||||+
T Consensus      1147 p~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~L 1226 (1363)
T KOG3628|consen 1147 PHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDL 1226 (1363)
T ss_pred             CCccccccCCcccccceeEEeCCccccccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeee
Confidence                01123777899999999987655 3 34489999999999888875321 222222         12469999999


Q ss_pred             EEEc------CC----ccEEEecccccCC
Q 013869          417 GKQD------ED----GYYIILGRKGIYF  435 (435)
Q Consensus       417 g~~~------~d----G~l~~~gR~~d~i  435 (435)
                      |++.      .+    .-||++|-.++.+
T Consensus      1227 GFl~~t~~t~~~~e~~~~LyVlG~i~Etl 1255 (1363)
T KOG3628|consen 1227 GFLRRTSLTDANVERHDLLYVLGAIDETL 1255 (1363)
T ss_pred             eeeeeeecccccceeeeeEEEeeccccee
Confidence            9983      22    3588888777653

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.95  E-value=2.3e-27  Score=224.71  Aligned_cols=206  Identities=21%  Similarity=0.241  Sum_probs=162.9

Q ss_pred             CCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCC--CCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCC
Q 013869          168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS--ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK  245 (435)
Q Consensus       168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~--~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~  245 (435)
                      ..+..++++|||||||.||+|.++|+++.+.+......++...  .+++++++|++|..++.+.++.++..|+++++.+.
T Consensus        93 ~~~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~  172 (386)
T TIGR02372        93 STPTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAA  172 (386)
T ss_pred             CCCCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCC
Confidence            4467899999999999999999999999998888877777644  46899999999999987778889999999999988


Q ss_pred             cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHH
Q 013869          246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWET  325 (435)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~  325 (435)
                      +++..+++.          +..  .|++.++|++++.+.+..            ..+++++. ++||+++++++++.+.+
T Consensus       173 ~~~~~~l~~----------i~~--~t~~~~~P~~l~~l~~~~------------~~l~slr~-i~gGa~l~~~l~~~~~~  227 (386)
T TIGR02372       173 APASGIMRH----------ARP--GDLIVGTPFIWEQLADLD------------YRLPGVVG-VSSGAPSTAATWRCLLA  227 (386)
T ss_pred             CChHHHHHh----------hcc--CCEEEECcHHHHHHHhhC------------cCCCccee-EecCCCCCHHHHHHHHH
Confidence            888777766          332  389999999999997631            23566775 67899999999999988


Q ss_pred             HhCC-cccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCccceEEEecCCccccccCCchhcccc
Q 013869          326 ITGH-RLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDS  404 (435)
Q Consensus       326 ~~~~-~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~  404 (435)
                      . +. .+++.||+||++++.+..     .+...|.|+|++++++.  +        |..  .|+                
T Consensus       228 ~-g~~~v~~~YG~TEt~~i~~~~-----~~~~~~~~~p~~~~~~~--~--------~~~--~g~----------------  273 (386)
T TIGR02372       228 A-GLARLLEVYGATETGGIGLRE-----APDDPFRLLPDLACFAD--T--------LSS--AGL----------------  273 (386)
T ss_pred             h-cccchhheecccccccccccc-----CCCCCcccCCCccccCC--C--------ccC--CCc----------------
Confidence            6 54 699999999998755432     12345778888776541  1        110  011                


Q ss_pred             cccCCccccCceEEEcCCccEEEecccccCC
Q 013869          405 FTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       405 ~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                         ..|++|||+|++|++|++++.||+||+|
T Consensus       274 ---~~~~~tgD~g~~d~~G~l~i~GR~dd~I  301 (386)
T TIGR02372       274 ---ARRLDLQDRLAWDKDGGFTILGRKDEIL  301 (386)
T ss_pred             ---cceeecCceEEEcCCCcEEEecccCCEE
Confidence               2368999999999999999999999986

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.95  E-value=1.8e-26  Score=223.73  Aligned_cols=236  Identities=18%  Similarity=0.149  Sum_probs=174.4

Q ss_pred             CCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHH---HHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcC
Q 013869          168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML---TEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP  244 (435)
Q Consensus       168 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~---~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~  244 (435)
                      ..++++++++||||||.||++.++|.++.......   ....++.++|++++..+..+..+.+...+.+...|++++.++
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  152 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS  152 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence            45678899999999999999999999886654333   334578899998887766544443334667788999999888


Q ss_pred             CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHH
Q 013869          245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWE  324 (435)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~  324 (435)
                      ..++..+++.          |.++++|++.++|+.+..|++..+...      .....+++|.++++|+++++++.+.++
T Consensus       153 ~~~~~~~~~~----------i~~~~~t~l~~~Ps~l~~L~~~~~~~~------~~~~~~~lr~i~~~ge~l~~~~~~~i~  216 (422)
T TIGR02155       153 GGQTEKQVQL----------IQDFKPDIIMVTPSYMLNLLEELKRMG------IDPAQTSLQVGIFGAEPWTNAMRKEIE  216 (422)
T ss_pred             CCCHHHHHHH----------HHHHCCCEEEEcHHHHHHHHHHHHHcC------CCcccCceEEEEEeCCcCCHHHHHHHH
Confidence            7777777777          666999999999999999987532211      001235899999999999999999999


Q ss_pred             HHhCCcccccccCccccc--hhccCCCCCCCCCccceecCCCeEEEecC-CCCCCCCc-cceEEEecCCccccccCCchh
Q 013869          325 TITGHRLLERYGMTEFVM--AISNPLRGARKAGTVGNPLPGVQVKIAED-ESGSDAAG-VGEICVKSPSLFKEYWKLPKV  400 (435)
Q Consensus       325 ~~~~~~l~~~YG~tE~~~--~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~~~~~~~~-~Gel~v~~~~~~~gy~~~~~~  400 (435)
                      +.|++++++.||+||+++  +......  ...+ ...+.+++.++|+|+ ++..++.+ .|||++++..           
T Consensus       217 ~~~g~~v~~~YG~tE~~~~~~~~~~~~--~~~g-~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~~-----------  282 (422)
T TIGR02155       217 ARLGMKATDIYGLSEVIGPGVAMECVE--TQDG-LHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTLT-----------  282 (422)
T ss_pred             HHhCCceEecccchhhcCCceeecccc--cCCC-ceEecCeeEEEEECCCCCCCCCCCCeeEEEEecCC-----------
Confidence            999999999999999852  2221110  1111 112234577889994 66676666 7999998732           


Q ss_pred             cccccccCCccccCceEEEcCC-c-----cEEEecccccCC
Q 013869          401 TKDSFTADGFFKTGDTGKQDED-G-----YYIILGRKGIYF  435 (435)
Q Consensus       401 ~~~~~~~~g~~~TGD~g~~~~d-G-----~l~~~gR~~d~i  435 (435)
                       ...+ ..+||+|||+|+++++ |     .+++.||.+|+|
T Consensus       283 -~~~~-p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i  321 (422)
T TIGR02155       283 -KEAL-PVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDML  321 (422)
T ss_pred             -cccc-ceeeEEcCcEEEEECCCCCcccccccccCccCCeE
Confidence             2223 3579999999999876 4     578999999986

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.94  E-value=3.4e-26  Score=200.96  Aligned_cols=207  Identities=18%  Similarity=0.176  Sum_probs=157.0

Q ss_pred             HHHhcccCCCeeEEEe--C----CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            7 AYKKGSMARDSVAIRA--D----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         7 ~~~~~~~~p~~~al~~--~----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      |...+.++|+++|++.  +    ++++||+||.++++++|++|++.                .|+++||+|+|+++|+++
T Consensus         2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~----------------~Gv~~GdrV~i~~~n~~~   65 (227)
T TIGR03089         2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDE----------------LDAEPGSRVALDLPAHWQ   65 (227)
T ss_pred             hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHH----------------hCCCCCCEEEEECCCCHH
Confidence            5677888999999974  2    23699999999999999999972                299999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccC-----CC-C--CCCCCc
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLI-----PP-V--PNVSSE  152 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-----~~-~--~~~~~~  152 (435)
                      ++++++||+++|++++|+|             .+++++++++++..+.+...     ..+..+     .. .  ......
T Consensus        66 ~~~~~~a~~~~G~v~vp~n-------------~s~a~~~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  127 (227)
T TIGR03089        66 TAVWLLAAWSTGVEVVLAG-------------DPDADVVVTGPDRLAAAAGS-----GEVVALSLDPLGRRVAGELPPGV  127 (227)
T ss_pred             HHHHHHHHHHcCCEEEeCC-------------CCCCCEEEeCcchhhhcccC-----CceEEEeccccccCCCCCCCCcc
Confidence            9999999999999999995             67899999998877764311     111111     00 0  000000


Q ss_pred             cccccch----hhhhcc-CCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHH
Q 013869          153 TTVFDQS----QAEKMD-GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF  227 (435)
Q Consensus       153 ~~~~~~~----~~~~~~-~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~  227 (435)
                      .......    ....+. ...++|++.++||||+         +|.+++.+.    ...+++++|+++ .+|++|..|+.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~  193 (227)
T TIGR03089       128 IDFAPEVRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFL  193 (227)
T ss_pred             cchhhhhhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHH
Confidence            0111101    111111 3456899999999975         566655544    556789999999 99999999998


Q ss_pred             HHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccc
Q 013869          228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAIT  271 (435)
Q Consensus       228 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t  271 (435)
                      ..++.++..|++++++++|++..+++.          |+++|+|
T Consensus       194 ~~~~~~l~~G~t~v~~~rFd~~~~l~~----------i~~~~vT  227 (227)
T TIGR03089       194 ATLLAPLAAGGSLVLVTHPDPARLDQI----------AETERVT  227 (227)
T ss_pred             HHHHHHhccCceEEEecCCCHHHHHHH----------HHhhcCC
Confidence            889999999999999999999999999          5667876

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.88  E-value=1.4e-21  Score=189.80  Aligned_cols=237  Identities=18%  Similarity=0.128  Sum_probs=165.7

Q ss_pred             CCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHh---ccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEc
Q 013869          167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFM  243 (435)
Q Consensus       167 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~  243 (435)
                      ...++++.+.+||||||.||++.+||.++..........   .++.++|+++...|..+..+.....+++...|++++..
T Consensus        83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~  162 (445)
T TIGR03335        83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE  162 (445)
T ss_pred             CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence            345688899999999999999999999987766554443   48889999999999887766544456677888887654


Q ss_pred             CCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHH
Q 013869          244 PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW  323 (435)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~  323 (435)
                      ..  ....++.          +.++++|.+.++|+.+..+++.+++...      ....+++|.+++||++++.++++.+
T Consensus       163 ~~--~~~~~~~----------i~~~~~t~l~~~ps~ll~La~~~~~~g~------~~~~~~lr~ii~gGE~l~~~~r~~i  224 (445)
T TIGR03335       163 GK--CTFPIRI----------IESYRPTGIVASVFKLLRLARRMKAEGI------DPAESSIRRLVVGGESFADESRNYV  224 (445)
T ss_pred             Cc--hhHHHHH----------HHHhCCCEEEECHHHHHHHHHHHHHcCC------CcccCcceEEEEcCCCCCHHHHHHH
Confidence            43  2334444          6668999999999998888765332110      0123689999999999999999999


Q ss_pred             HHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCC-CCCc-cceEEEecCCccccccCCchhc
Q 013869          324 ETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGS-DAAG-VGEICVKSPSLFKEYWKLPKVT  401 (435)
Q Consensus       324 ~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~-~~~~-~Gel~v~~~~~~~gy~~~~~~~  401 (435)
                      .+.|++++++.||+||++....+.     .......+-+.+.++|+|+++.. ++.| .|||++.+-...      ....
T Consensus       225 e~~~g~~v~~~YG~TE~~~~~~c~-----~~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~------~~r~  293 (445)
T TIGR03335       225 EELWGCEVYNTYGSTEGTMCGECQ-----AVAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKP------GERC  293 (445)
T ss_pred             HHHhCCcEEecCChhhhhheEEec-----CCCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCC------CccC
Confidence            999999999999999986322221     11122233356789999987654 5555 799999864210      0000


Q ss_pred             ccccccCCccccCceEEEcC--C---c----cEEEecccccCC
Q 013869          402 KDSFTADGFFKTGDTGKQDE--D---G----YYIILGRKGIYF  435 (435)
Q Consensus       402 ~~~~~~~g~~~TGD~g~~~~--d---G----~l~~~gR~~d~i  435 (435)
                      ...+.   -|+|||++++..  .   |    .+...||.||++
T Consensus       294 ~~Pli---RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~  333 (445)
T TIGR03335       294 GSLLI---NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETI  333 (445)
T ss_pred             CceEE---EeecCceEEEecCCCCCCCCCcceeCCCcccCceE
Confidence            01111   289999999732  2   2    244569999975

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.83  E-value=5.5e-20  Score=186.56  Aligned_cols=401  Identities=19%  Similarity=0.195  Sum_probs=240.4

Q ss_pred             HHHHHHhcccCCCeeEEEeC--------CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEe
Q 013869            4 FKAAYKKGSMARDSVAIRAD--------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (435)
Q Consensus         4 ~~~~~~~~~~~p~~~al~~~--------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~   75 (435)
                      ...+.+.+.+.|...+....        -.+.||.+....++.++..|.+.                 +...|+.|++++
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~-----------------~~~~~~~v~i~~  101 (1032)
T KOG1178|consen   39 EDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSL-----------------GSLRGTTVAIYM  101 (1032)
T ss_pred             hhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhc-----------------ccccCceEEEec
Confidence            34566667777777766541        25899999999999999999994                 889999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHH---hccCCccccCCCCCCCCCc
Q 013869           76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA---SKSGAKFSLIPPVPNVSSE  152 (435)
Q Consensus        76 ~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  152 (435)
                      ..+.++++..+|.+++|..+++++|.++.-+....+.+......-...+...++....   .....+.... ..  ....
T Consensus       102 ~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~~~~~~~~~~~~sv~-~~--~~~f  178 (1032)
T KOG1178|consen  102 LPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNIIDILLNSLFPKLSVE-TI--ADSF  178 (1032)
T ss_pred             cCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhhHHHHhhccccccchh-hc--cchh
Confidence            9999999999999999999999999999111111111111111111111111111111   0000000000 00  0000


Q ss_pred             cccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHH
Q 013869          153 TTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLA  232 (435)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~  232 (435)
                      ................++..+.+.||||+||.||+|..+|..+.....|....+..+..+++-.....+...... .+..
T Consensus       179 ~~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~i~-~~~~  257 (1032)
T KOG1178|consen  179 QMVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDTIQ-KFIG  257 (1032)
T ss_pred             hhhhccCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccchH-HHHh
Confidence            111111122233455678899999999999999999999999999999988888888888764444443333332 3444


Q ss_pred             HH-HcCCEEEEcCCcch--hHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHH-----hhhhccc
Q 013869          233 PL-YAGATVEFMPKFSV--RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAA-----SASAAKQ  304 (435)
Q Consensus       233 ~l-~~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~-----~~~~l~~  304 (435)
                      ++ .+|..+..+.....  ...+..+         +++|+++....+|++.++++.............     .....+.
T Consensus       258 ~~L~~~~~l~~p~~~~~~~~~~l~~~---------le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~  328 (1032)
T KOG1178|consen  258 ALLFNGNNLLVPTATIKDTPGQLAST---------LERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSC  328 (1032)
T ss_pred             hHhhcCceeecccccCccchhhHHHH---------HHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchh
Confidence            44 55555555544443  2333333         677999999999999999887765531111111     1112358


Q ss_pred             cEEEEecCCCCCHHHHHHHHHHhCC-cccccccCccccchhc----cCCCCCCCCCccceecCC-------CeEEEecCC
Q 013869          305 LRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEFVMAIS----NPLRGARKAGTVGNPLPG-------VQVKIAEDE  372 (435)
Q Consensus       305 lr~i~~~G~~l~~~l~~~~~~~~~~-~l~~~YG~tE~~~~~~----~~~~~~~~~~~~G~p~~~-------~~~~i~d~~  372 (435)
                      |+...++|++...+++..+.+.+.. -...-|+.++..+-++    .+.........++.+..+       +-..+....
T Consensus       329 Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~  408 (1032)
T KOG1178|consen  329 LKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLYRA  408 (1032)
T ss_pred             heeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeeecc
Confidence            9999999999999999977766522 2223488888765443    222211122222222211       222333333


Q ss_pred             CCCCCCcc-----ceEEEecCCccccccCCchhccccc-----ccCCccccCceEEEcCCccEEEecccccCC
Q 013869          373 SGSDAAGV-----GEICVKSPSLFKEYWKLPKVTKDSF-----TADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       373 ~~~~~~~~-----Gel~v~~~~~~~gy~~~~~~~~~~~-----~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +.++.+.+     |.-+.-+..+..|| ..++.....+     ..+.+|+|||+|+..++|.+.+.||.|++|
T Consensus       409 ~~~~~~~v~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qI  480 (1032)
T KOG1178|consen  409 GGEGEGGVGKGCLGAEQNLSSWVVDGY-STPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQI  480 (1032)
T ss_pred             CcccCCcccceeecccccccceeeccc-cchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceE
Confidence            44443332     22222234444553 2222222211     113589999999998999999999999975

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.77  E-value=1.8e-17  Score=153.74  Aligned_cols=237  Identities=19%  Similarity=0.149  Sum_probs=171.3

Q ss_pred             CCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhc---cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEE
Q 013869          166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF  242 (435)
Q Consensus       166 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~  242 (435)
                      ..+.++...|..||||||.|+-+.+++..+......++..+   +...+|++..+.-..-..|-....+++-..|.+++-
T Consensus        86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip  165 (438)
T COG1541          86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIP  165 (438)
T ss_pred             cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEc
Confidence            44556777799999999999999999998777666666654   677888876665532222222335566667777777


Q ss_pred             cCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHH
Q 013869          243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ  322 (435)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~  322 (435)
                      ..+-+.+.....          +..+++|++.++|+.+..|++.+++...      ...-.++|.+++|+|++++++++.
T Consensus       166 ~~~g~~~~~~~l----------~~df~~tvI~~tps~~l~lae~~~~~G~------~~~~~~lk~~i~gaE~~see~R~~  229 (438)
T COG1541         166 ISGGNTERQLEL----------MKDFKPTVIAATPSYLLYLAEEAEEEGI------DPDKLSLKKGIFGAEPWSEEMRKV  229 (438)
T ss_pred             cCCccHHHHHHH----------HHhcCCcEEEEChHHHHHHHHHHHHcCC------ChhhcceeEEEEecccCCHHHHHH
Confidence            766566777777          5669999999999999999998765531      123367999999999999999999


Q ss_pred             HHHHhCCcccccccCccccchh-ccCCCCCCCCCccceecCCCeEEEecCC-CCCCCCc-cceEEEecCCccccccCCch
Q 013869          323 WETITGHRLLERYGMTEFVMAI-SNPLRGARKAGTVGNPLPGVQVKIAEDE-SGSDAAG-VGEICVKSPSLFKEYWKLPK  399 (435)
Q Consensus       323 ~~~~~~~~l~~~YG~tE~~~~~-~~~~~~~~~~~~~G~p~~~~~~~i~d~~-~~~~~~~-~Gel~v~~~~~~~gy~~~~~  399 (435)
                      +.+.|++..++.||+||..+.. ....    ......-+-+...+.|+|++ +...+.+ .|||++..=.  +       
T Consensus       230 ie~~~g~~~~diYGltE~~g~g~~eC~----~~~glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L~--~-------  296 (438)
T COG1541         230 IENRFGCKAFDIYGLTEGFGPGAGECT----ERNGLHIWEDHFIFEIVDPETGEQLPDGERGELVITTLT--K-------  296 (438)
T ss_pred             HHHHhCCceeeccccccccCCcccccc----cccCCCcchhhceeeeecCCcCccCCCCCeeEEEEEecc--c-------
Confidence            9999999999999999986653 2111    11123334466888999955 4556666 5999987522  0       


Q ss_pred             hcccccccCCccccCceEEEcCC----c-----cEEEecccccCC
Q 013869          400 VTKDSFTADGFFKTGDTGKQDED----G-----YYIILGRKGIYF  435 (435)
Q Consensus       400 ~~~~~~~~~g~~~TGD~g~~~~d----G-----~l~~~gR~~d~i  435 (435)
                       ....+.   -|+|||++++.++    |     ...+.||.+|+|
T Consensus       297 -~~~PlI---RYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l  337 (438)
T COG1541         297 -EGMPLI---RYRTGDITVILSDPCGCGRTHRRIERIEGRSDDML  337 (438)
T ss_pred             -cCcceE---EEEcCCeeEecccCCCCCCccccccccCcccccEE
Confidence             001111   3999999999763    3     267789999975

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.72  E-value=1.2e-16  Score=158.22  Aligned_cols=399  Identities=21%  Similarity=0.174  Sum_probs=267.7

Q ss_pred             HHHHHHHhcccCCCeeEEEeC-----CcccCHHHHHHHHHHHHH-HHhhCCCCCccccccccccccccCCCCCeEEEEeC
Q 013869            3 VFKAAYKKGSMARDSVAIRAD-----QKSYSYDQLASSALRISS-LLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (435)
Q Consensus         3 i~~~~~~~~~~~p~~~al~~~-----~~~~Ty~el~~~~~~la~-~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~   76 (435)
                      +...+...-+.++-..|.|.-     ...+||..+..++.+.|+ .|.+                 .|+.++|+|.+++.
T Consensus        96 ~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~k-----------------sgl~~~~~vvL~Y~  158 (1363)
T KOG3628|consen   96 IIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNK-----------------SGLKPGDRVVLYYR  158 (1363)
T ss_pred             hHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhc-----------------cCCCCCcEEEEEEE
Confidence            445555566777777777752     258999999999999999 5555                 49999999999998


Q ss_pred             CC--HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHH-hccCCccccCCCCCCCCCcc
Q 013869           77 PS--FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA-SKSGAKFSLIPPVPNVSSET  153 (435)
Q Consensus        77 ~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  153 (435)
                      .+  .++++..++|...|.+.+|+.+..+-+++..+++..+.+++++.......+.... +....+-..++...+..   
T Consensus       159 ~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~w~t~~~k---  235 (1363)
T KOG3628|consen  159 KCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAWWKTNDFK---  235 (1363)
T ss_pred             hhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHhhhccccc---
Confidence            88  9999999999999999999999999999999999999999999987665543322 10000000000111111   


Q ss_pred             ccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHH--------------------HhccCCCCCe
Q 013869          154 TVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT--------------------EAWEYTSADQ  213 (435)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~--------------------~~~~~~~~~~  213 (435)
                       ..-.......+...-. ..+|-||.+++|.--+++.+|. ++.+.+...                    ..+++..++.
T Consensus       236 -~~~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~  312 (1363)
T KOG3628|consen  236 -GNYTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDV  312 (1363)
T ss_pred             -ceeehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccc
Confidence             0011111122223333 8999999999999999999987 444333322                    1223456777


Q ss_pred             eEEeecchhhhHHHHHHHHHHHcCCEEEEcCC---cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccc
Q 013869          214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM  290 (435)
Q Consensus       214 ~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  290 (435)
                      ++....+....|++.+++.++++|.|.+.+|+   ..+-.+...          +.+++.++++.--..++.....+.+.
T Consensus       313 ~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l----------~~k~R~~~~ltd~~~Lkq~~~ny~~~  382 (1363)
T KOG3628|consen  313 LLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANL----------ITKYRATWSLTDYAGLKQPVYNYQED  382 (1363)
T ss_pred             eeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhh----------hccceeEEEeecccccCcccccccCC
Confidence            88888888888888899999999999999987   333333333          78899999999877777777665544


Q ss_pred             cHHHHH---HhhhhccccEEEEecCCCCCHHHHHHHHHHh----CCc------------------ccccccCccccchhc
Q 013869          291 DTELQA---ASASAAKQLRLMMCGSSALPLPVMQQWETIT----GHR------------------LLERYGMTEFVMAIS  345 (435)
Q Consensus       291 ~~~~~~---~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~----~~~------------------l~~~YG~tE~~~~~~  345 (435)
                      +.+...   ....+++++|.++.....++.+...-....+    |..                  ....-+.+|.+...-
T Consensus       383 p~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~  462 (1363)
T KOG3628|consen  383 PKATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSI  462 (1363)
T ss_pred             cccccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccc
Confidence            332222   2224799999999999999988655544332    211                  111111223222211


Q ss_pred             cCCCC------------------------------CCCCCccceecCC-CeEEEecCCCCC-C-CCccceEEEecCCccc
Q 013869          346 NPLRG------------------------------ARKAGTVGNPLPG-VQVKIAEDESGS-D-AAGVGEICVKSPSLFK  392 (435)
Q Consensus       346 ~~~~~------------------------------~~~~~~~G~p~~~-~~~~i~d~~~~~-~-~~~~Gel~v~~~~~~~  392 (435)
                      .....                              ....-.+|+..|| +.+.+++++.+. + .+++|||||.+++..+
T Consensus       463 r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~  542 (1363)
T KOG3628|consen  463 RRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGK  542 (1363)
T ss_pred             cCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCccc
Confidence            11110                              0001123454444 556777777655 4 4448999999999999


Q ss_pred             cccCCchhccccccc------------CCccccCceEEEcCCccEEEecccccCC
Q 013869          393 EYWKLPKVTKDSFTA------------DGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       393 gy~~~~~~~~~~~~~------------~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +|+.-+..|...|..            ..|.+||=+||+ .+|.+|++|=+.|.+
T Consensus       543 ~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv-~~gki~vl~~k~d~l  596 (1363)
T KOG3628|consen  543 LFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFV-HNGKIYVLGLKEDGL  596 (1363)
T ss_pred             ceeeccccccceEEeeeccccCCCCccchhhhhcceeee-eCCeEEEEEechhhh
Confidence            999877777766611            238999999999 668888888776653

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.41  E-value=5.4e-12  Score=120.38  Aligned_cols=214  Identities=12%  Similarity=0.092  Sum_probs=128.0

Q ss_pred             CcEEEEecCCCCCCCceEEeehHHHHHHHHHH-HHhc--cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCE-EEEcCC-
Q 013869          171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQML-TEAW--EYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT-VEFMPK-  245 (435)
Q Consensus       171 ~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~-~~~~--~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~-~~~~~~-  245 (435)
                      .-..+..||||||.|-.+..+........... ....  +...++++...+.-   .+   .++..+.+... +...+- 
T Consensus       100 ~~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~---~~---~ly~~~~~~~~~~~~~~l~  173 (430)
T TIGR02304       100 GNISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRA---DN---NLYQSVNNRWISLDFFDLL  173 (430)
T ss_pred             CcEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEcc---Ch---hHHHHHHhccceeeecCCC
Confidence            44567789999999999999987653332222 2222  44555554443211   10   12222322211 222211 


Q ss_pred             cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHH
Q 013869          246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWET  325 (435)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~  325 (435)
                      .+.+..++.          |.+++|+.+.+.|+.+..|++..++..        .. ..++.++++||.++++..+.+++
T Consensus       174 ~~~~~~l~~----------L~~~~P~~L~g~pS~l~~LA~~~~~~~--------l~-~~~k~ii~~~E~l~~~~r~~Ie~  234 (430)
T TIGR02304       174 APFQAHIKR----------LNQRKPSIIVAPPSVLRALALEVMEGE--------LT-IKPKKVISVAEVLEPQDRELIRN  234 (430)
T ss_pred             cCHHHHHHH----------HHHhCCCEEEEcHHHHHHHHHHHHhcC--------CC-CCceEEEEccCCCCHHHHHHHHH
Confidence            234445555          677999999999999999998644211        11 36899999999999999999999


Q ss_pred             HhCCcccccccCccccchhccCCCCCCCCCccceecC-C--CeEEEecCCCCCCCCccceEEEecCCccccccCCchhcc
Q 013869          326 ITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLP-G--VQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTK  402 (435)
Q Consensus       326 ~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~-~--~~~~i~d~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~  402 (435)
                      .||+++++.||+|| |.+++....     +.. ...+ .  +|..++|+++.      +..++.+      +.+.    .
T Consensus       235 ~fg~~V~~~YG~tE-g~la~eC~~-----g~l-Hl~ed~~~vE~~ivD~~~~------~~~ViT~------L~n~----~  291 (430)
T TIGR02304       235 VFKNTVHQIYQATE-GFLASTCRC-----GTL-HLNEDLVHIEKQYLDEHKR------FVPIITD------FTRT----T  291 (430)
T ss_pred             HhCCCeeEccCCch-hheEEecCC-----CCE-EEccccEEEEeeEECCCCc------eEEEEec------CCCc----c
Confidence            99999999999999 544433211     111 2222 2  33337887642      2333322      2211    1


Q ss_pred             cccccCCccccCceEEEcCC----cc----E-EEecccccCC
Q 013869          403 DSFTADGFFKTGDTGKQDED----GY----Y-IILGRKGIYF  435 (435)
Q Consensus       403 ~~~~~~g~~~TGD~g~~~~d----G~----l-~~~gR~~d~i  435 (435)
                      ..+.   -|+|||++.+.++    |.    | .+.||.+|+|
T Consensus       292 ~PlI---RYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l  330 (430)
T TIGR02304       292 QPIV---RYRLNDILVESEQPCSCGSATMAIERIEGRQDDIF  330 (430)
T ss_pred             ceEE---eeeCCCEEEeCCCCCCCCCcccccCCccCccCCEE
Confidence            1111   2899999988543    32    3 3789999874

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.84  E-value=7.1e-07  Score=83.58  Aligned_cols=233  Identities=20%  Similarity=0.277  Sum_probs=138.1

Q ss_pred             CCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhcc----CCC-CCeeEEeecchhhh-HH---HHHHHHHHHcC
Q 013869          167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE----YTS-ADQFLHCLPLHHVH-GL---FNALLAPLYAG  237 (435)
Q Consensus       167 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~----~~~-~~~~l~~~pl~~~~-g~---~~~~~~~l~~G  237 (435)
                      ...+++..++.||||||.|.-+.+.+..+..+.......++    ... ...++...|-.... .+   .......+..+
T Consensus        86 ~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~  165 (365)
T PF04443_consen   86 VPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFG  165 (365)
T ss_pred             cChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccC
Confidence            44567888999999999987777776666555544433322    221 22344444442211 11   11233334455


Q ss_pred             CEEEEc-CCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhcc-ccEEEEecC---
Q 013869          238 ATVEFM-PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK-QLRLMMCGS---  312 (435)
Q Consensus       238 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~-~lr~i~~~G---  312 (435)
                      +...+- ..++.+.....+.+.      ..+.++..+++.|.++..++..+++...      ...++ ..+.+..||   
T Consensus       166 ~~~~l~~~~ld~~~~~~~L~~~------~~~~~pv~l~Gftf~~~~~~~~l~~~~~------~~~L~~~s~vi~~GGwK~  233 (365)
T PF04443_consen  166 SRFALDNDELDLEGLIEALFRA------EHSGEPVLLFGFTFFIWFLLDELEERGI------RFRLPKGSIVIHGGGWKG  233 (365)
T ss_pred             ceeeecCCccCHHHHHHHHHHH------HhCCCCEEEECchHHHHHHHHHHHhcCC------cccCCCCCEEEeCCCCCc
Confidence            554442 235667666666543      3557899999999988888776543321      11232 456666665   


Q ss_pred             ---CCCC-HHHHHHHHHHhCC----cccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCC-CCCCCc-cce
Q 013869          313 ---SALP-LPVMQQWETITGH----RLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDES-GSDAAG-VGE  382 (435)
Q Consensus       313 ---~~l~-~~l~~~~~~~~~~----~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~-~~~~~~-~Ge  382 (435)
                         +.++ .++.+.+++.||+    .+++.||+||.....+...... .      +.|.- +.|.|+.+ .+++.| .|-
T Consensus       234 ~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~-~------~~p~w-V~iRDp~tl~~~~~Ge~Gl  305 (365)
T PF04443_consen  234 RRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGH-F------HVPPW-VIIRDPETLEPLPPGETGL  305 (365)
T ss_pred             cccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCCc-c------cCCCe-EEEECCCCCcCCCCCCeeE
Confidence               3354 4667777888887    7899999999865544332111 1      11111 66667654 445555 798


Q ss_pred             EEEecCCccccccCCchhcccccccCCccccCceEEEcCC--------ccEEEeccccc
Q 013869          383 ICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDED--------GYYIILGRKGI  433 (435)
Q Consensus       383 l~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~d--------G~l~~~gR~~d  433 (435)
                      |.+-++... .|             -+...|.|+|.+..+        .++.++||.+.
T Consensus       306 i~vidl~~~-s~-------------p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~  350 (365)
T PF04443_consen  306 IQVIDLANT-SY-------------PGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG  350 (365)
T ss_pred             EEEEccccc-CC-------------CcEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence            988765421 11             244789999988654        27999999864

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PRK09188 serine/threonine protein kinase; Provisional

Probab=97.48  E-value=7.3e-05  Score=70.18  Aligned_cols=26  Identities=15%  Similarity=0.197  Sum_probs=24.4

Q ss_pred             cCCccccCceEEE-cCCccEEEecccc
Q 013869          407 ADGFFKTGDTGKQ-DEDGYYIILGRKG  432 (435)
Q Consensus       407 ~~g~~~TGD~g~~-~~dG~l~~~gR~~  432 (435)
                      ++|||+|||+|++ |+||+|+|.||.+
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~  233 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG  233 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc
Confidence            5899999999998 7999999999987

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=97.16  E-value=0.00089  Score=66.60  Aligned_cols=114  Identities=15%  Similarity=0.165  Sum_probs=60.1

Q ss_pred             hhhccccEEEEecCCCCCHHHHHHHHHHhCC--cccccccCccccchhccCCCCCCCCCccceecCCC-eEEEecCC--C
Q 013869          299 ASAAKQLRLMMCGSSALPLPVMQQWETITGH--RLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGV-QVKIAEDE--S  373 (435)
Q Consensus       299 ~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~--~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~--~  373 (435)
                      ..-+|.|+.+.+.+..-...-.+.+++.++-  .+...|++||+-+.+-..     .....+...++. -.+-++.+  +
T Consensus       263 ~~lWP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~-----~~~~~~~l~~~~~ffEFip~~~~~  337 (528)
T PF03321_consen  263 KRLWPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLD-----PEDPGYVLAPDSGFFEFIPVDEDE  337 (528)
T ss_dssp             HHHSTT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES------CCC--EEE-TTSSEEEEEE-STT-
T ss_pred             HHhCCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecC-----CCCCceEeecCCeEEEEEeccCCc
Confidence            4458999988887777777778888888853  344699999964322221     111222333321 23333322  1


Q ss_pred             -------CC-----C-CCccceEEEecCCccccccCCchhcccccccCCccccCceEEEcC--Cc--cEEEecccccC
Q 013869          374 -------GS-----D-AAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDE--DG--YYIILGRKGIY  434 (435)
Q Consensus       374 -------~~-----~-~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~--dG--~l~~~gR~~d~  434 (435)
                             +.     + .+..-||.+...+   |.|              -|+.||++++..  ++  .+.|.||.+.+
T Consensus       338 ~~~~~~~~~l~~~ele~G~~YelviTt~~---GLy--------------RY~iGDvVrv~gf~~~~P~i~F~~R~~~~  398 (528)
T PF03321_consen  338 QNPSEQPKTLLLHELEVGEEYELVITTNS---GLY--------------RYRIGDVVRVTGFYNQTPRIEFVGRRGQV  398 (528)
T ss_dssp             ------SSSEEGGG--TT-EEEEEEESTT---S-S--------------SEEECEEEEEEEEETTEEEEEEEEETTEE
T ss_pred             ccccCCCceecHHHhcCCCeEEEEEeccc---cee--------------eeecCCEEEEeeccCCCcEEEEeccCCce
Confidence                   11     1 1113455555421   221              289999999943  34  69999999853

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=96.72  E-value=0.047  Score=54.47  Aligned_cols=43  Identities=9%  Similarity=0.028  Sum_probs=31.7

Q ss_pred             hhhccccEEEEecCCCCCHHHHHHHHHHh-CCcccc-cccCcccc
Q 013869          299 ASAAKQLRLMMCGSSALPLPVMQQWETIT-GHRLLE-RYGMTEFV  341 (435)
Q Consensus       299 ~~~l~~lr~i~~~G~~l~~~l~~~~~~~~-~~~l~~-~YG~tE~~  341 (435)
                      ..-+|+++.|-+....-...-...++..+ ++++.. .|++||+.
T Consensus       300 ~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~  344 (612)
T PLN02620        300 TRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECY  344 (612)
T ss_pred             HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceE
Confidence            34578999998877777777777776655 566554 99999964

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=96.67  E-value=0.27  Score=49.32  Aligned_cols=43  Identities=12%  Similarity=0.071  Sum_probs=32.1

Q ss_pred             hhhccccEEEEecCCCCCHHHHHHHHHHh-CCcccc-cccCcccc
Q 013869          299 ASAAKQLRLMMCGSSALPLPVMQQWETIT-GHRLLE-RYGMTEFV  341 (435)
Q Consensus       299 ~~~l~~lr~i~~~G~~l~~~l~~~~~~~~-~~~l~~-~YG~tE~~  341 (435)
                      ..-+|.++.|.+....-...-...++..+ +++++. .|++||+.
T Consensus       289 ~rLWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~  333 (606)
T PLN02247        289 KRLWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECY  333 (606)
T ss_pred             HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceE
Confidence            34678999999877777777777777655 566554 99999964

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=95.73  E-value=0.23  Score=49.99  Aligned_cols=31  Identities=23%  Similarity=0.213  Sum_probs=25.7

Q ss_pred             CCCCCCcEEEEecCCCC-CCCceEEeehHHHH
Q 013869          166 GQRGEDPALIVYTSGTT-GKPKGVVHTHKSID  196 (435)
Q Consensus       166 ~~~~~~~~~i~~TSGtT-G~pK~v~~t~~~l~  196 (435)
                      ...++.+.++..||||| |.+|-|.+|...+-
T Consensus        96 vL~~~pi~~f~~SSGTT~g~~K~IP~T~~~l~  127 (597)
T PLN02249         96 ILSSHPITEFLTSSGTSAGERKLMPTIEEDID  127 (597)
T ss_pred             eeCCCchhhhcccCCCCCCceeEEeccHHHHH
Confidence            35567788999999999 88999999986553

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=95.15  E-value=0.24  Score=47.39  Aligned_cols=93  Identities=16%  Similarity=0.132  Sum_probs=77.7

Q ss_pred             ccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC--HHHHHHHHHHHHhCCeEEeCCCCCC
Q 013869           26 SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLALSYP  103 (435)
Q Consensus        26 ~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~  103 (435)
                      -+|+.|....+..+|+.|..                 +|+.+||+|.....-+  ..-+...+|+.++|+.++|+.+. .
T Consensus       109 ~~t~~D~~~wa~~~aR~~~~-----------------~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~  170 (438)
T COG1541         109 GYTAKDIERWAELLARSLYS-----------------AGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-N  170 (438)
T ss_pred             ecCHHHHHHHHHHHHHHHHH-----------------ccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-c
Confidence            58999999999999999999                 6999999999987722  12267889999999999999884 3


Q ss_pred             HHHHHHHHhcCCccEEEechhhHHHHHHHHhcc
Q 013869          104 ESELLHVMHDSDISMVLSTEDYREVLQNVASKS  136 (435)
Q Consensus       104 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~  136 (435)
                      -+.-..++++.++.++.+.+.+.-.+.+...+.
T Consensus       171 ~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~  203 (438)
T COG1541         171 TERQLELMKDFKPTVIAATPSYLLYLAEEAEEE  203 (438)
T ss_pred             HHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHc
Confidence            445578899999999999999988777766654

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=85.60  E-value=8.6  Score=37.34  Aligned_cols=89  Identities=15%  Similarity=0.205  Sum_probs=65.9

Q ss_pred             ccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCH--HHHHHHHHHHHhCCeEEeCCCCCC
Q 013869           26 SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF--EFVAGVLGTWFSGCIAVPLALSYP  103 (435)
Q Consensus        26 ~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~  103 (435)
                      .+|..++......++..+..                 +|+++||++....+.+.  ......++++..|+.+++++... 
T Consensus        94 ~~t~~~~~~~~~~~~~~~~~-----------------~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-  155 (422)
T TIGR02155        94 GYTQNDIDTWSSVVARSIRA-----------------AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-  155 (422)
T ss_pred             ccCHHHHHHHHHHHHHHHHH-----------------cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-
Confidence            46777777666666666665                 48899999887665442  22334677889999999987654 


Q ss_pred             HHHHHHHHhcCCccEEEechhhHHHHHHH
Q 013869          104 ESELLHVMHDSDISMVLSTEDYREVLQNV  132 (435)
Q Consensus       104 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  132 (435)
                      .+.+...+++.++.+++..+.....+...
T Consensus       156 ~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~  184 (422)
T TIGR02155       156 TEKQVQLIQDFKPDIIMVTPSYMLNLLEE  184 (422)
T ss_pred             HHHHHHHHHHHCCCEEEEcHHHHHHHHHH
Confidence            46788899999999999999887665543

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=84.10  E-value=12  Score=36.66  Aligned_cols=84  Identities=13%  Similarity=0.048  Sum_probs=62.7

Q ss_pred             ccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH--HHHHHHHHHHhCCeEEeCCCCCC
Q 013869           26 SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE--FVAGVLGTWFSGCIAVPLALSYP  103 (435)
Q Consensus        26 ~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~--~~~~~lA~~~~G~~~v~l~~~~~  103 (435)
                      -+|..++...+...+..+..                 +|+.+||++.+..+.+..  .....+|++.+|+.++|...   
T Consensus       105 ~~T~~dl~~~~~~~~r~~~~-----------------~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---  164 (445)
T TIGR03335       105 FLTWDDWKRYAEKYARSFVS-----------------QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---  164 (445)
T ss_pred             eecHHHHHHHHHHHHHHHHH-----------------cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---
Confidence            47889998888888877776                 489999999998876532  23456788899998887643   


Q ss_pred             HHHHHHHHhcCCccEEEechhhHHHH
Q 013869          104 ESELLHVMHDSDISMVLSTEDYREVL  129 (435)
Q Consensus       104 ~~~l~~~l~~~~~~~vi~~~~~~~~~  129 (435)
                      ......++++.++.+++..+...-.+
T Consensus       165 ~~~~~~~i~~~~~t~l~~~ps~ll~L  190 (445)
T TIGR03335       165 CTFPIRIIESYRPTGIVASVFKLLRL  190 (445)
T ss_pred             hhHHHHHHHHhCCCEEEECHHHHHHH
Confidence            23456788999999998877655443

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=80.47  E-value=16  Score=36.24  Aligned_cols=86  Identities=19%  Similarity=0.209  Sum_probs=64.7

Q ss_pred             cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCH--HHHHHHHHHHHhCCeEEeCCCCC
Q 013869           25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF--EFVAGVLGTWFSGCIAVPLALSY  102 (435)
Q Consensus        25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~  102 (435)
                      ..+|+..+...+..+...                    .++++++++....+...  .+...+++++..|+.+++. +..
T Consensus       184 v~~s~~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~-~~~  242 (513)
T PRK07656        184 AMLTHRQLLSNAADWAEY--------------------LGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL-PVF  242 (513)
T ss_pred             EEEecHHHHHHHHHHHHh--------------------hCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec-CcC
Confidence            368888887665554333                    36788999988877542  3345578899999988875 556


Q ss_pred             CHHHHHHHHhcCCccEEEechhhHHHHHH
Q 013869          103 PESELLHVMHDSDISMVLSTEDYREVLQN  131 (435)
Q Consensus       103 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~  131 (435)
                      +.+.+...+++.++.++...+.....+..
T Consensus       243 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~  271 (513)
T PRK07656        243 DPDEVFRLIETERITVLPGPPTMYNSLLQ  271 (513)
T ss_pred             CHHHHHHHHHHhCCeEEechHHHHHHHHc
Confidence            78889999999999999999988776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	435
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		2e-54
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		4e-52
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		1e-47
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		1e-47
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		1e-47
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		2e-28
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		4e-28
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		2e-19
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		9e-19
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		6e-18
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		1e-17
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		2e-17
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		2e-17
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		3e-17
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		3e-17
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		6e-17
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		1e-16
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		1e-16
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		2e-16
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-16
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		6e-16
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		1e-15
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		1e-15
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-15
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		3e-15
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		2e-13
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		2e-13
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		3e-13
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		7e-12
3vnq_A	544	Co-crystal Structure Of Nrps Adenylation Protein Cy		3e-11
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		4e-11
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		5e-11
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		5e-11
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		5e-11
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		5e-11
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		5e-11
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		5e-11
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		2e-10
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		1e-09
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		6e-09
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		6e-09
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		7e-09
3e53_A	480	Crystal Structure Of N-Terminal Domain Of A Fatty A		7e-09
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		7e-09
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		7e-09
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		8e-09
3t5a_A	480	Crystal Structure Of N-Terminal Domain Of Faal28 G3		2e-08
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		6e-08
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		9e-08
4gr4_A	469	Crystal Structure Of Slgn1deltaasub Length = 469		9e-08
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		1e-07
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		2e-07
3l8c_A	521	Structure Of Probable D-Alanine--Poly(Phosphoribito		1e-06
3e7w_A	511	Crystal Structure Of Dlta: Implications For The Rea		5e-05
3dhv_A	512	Crystal Structure Of Dlta Protein In Complex With D		6e-04
3fcc_A	512	Crystal Structure Of Dlta Protein In Complex With A		7e-04

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score =  209 bits (533), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/367 (36%), Positives = 189/367 (51%), Gaps = 37/367 (10%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           R+ + A P+ E    V+    +G  AVPL     + EL H++ DS  S+VL+  D     
Sbjct: 70  RVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE--- 126
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQ-AEKMDGQRGEDPALIVYTSGTTGKPKGV 188
                        +PP         V  +++ A   DG    DPAL+VYTSGTTG PKG 
Sbjct: 127 -------------LPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGA 173
Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
           V   +++   +  L +AW++T  D  +  LPL HVHGL   +L PL  G +V  + +FS 
Sbjct: 174 VIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFST 233
Query: 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM 308
            G  +   +             T   GVPTMY R+ +   A D EL           RL+
Sbjct: 234 EGAARELNDGA-----------TMLFGVPTMYHRIAETLPA-DPELAKALAGA----RLL 277
Query: 309 MCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKI 368
           + GS+ALP+   ++    TG R++ERYGMTE +M  S    G  +AGTVG PLPGV++++
Sbjct: 278 VSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRL 337
Query: 369 AEDE----SGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGY 424
            E++    +  D   VGEI V+ P+LF EY   P  T  +FT DGFF+TGD   +D DGY
Sbjct: 338 VEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGY 397
Query: 425 YIILGRK 431
             I+GRK
Sbjct: 398 VRIVGRK 404

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score =  202 bits (513), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 178/366 (48%), Gaps = 22/366 (6%)
Query: 67  CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
            G R+    + S E +   L T  +G + +PL  +Y   EL + + D++  +V+     R
Sbjct: 52  VGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
           + +  +A+K GA    + P    S        S+A     +  +D A I+YTSGTTG+ K
Sbjct: 112 DGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSK 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
           G   +H ++ +    L + W +T  D  +H LP++H HGLF A    L+A  +  F+PKF
Sbjct: 172 GAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
               I      +            T   GVPT YTRL+Q                    R
Sbjct: 232 DPDKILDLXARA------------TVLXGVPTFYTRLLQS--------PRLTKETTGHXR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
           L + GS+ L     ++W   TGH +LERYG TE     SNP  G R  G VG  LPGV  
Sbjct: 272 LFISGSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALPGVSA 331
Query: 367 KIAEDESGSD--AAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGY 424
           ++ + E+G +     +G I VK P++FK YW+ P+ TK  F  DGFF TGD GK DE GY
Sbjct: 332 RVTDPETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGY 391
Query: 425 YIILGR 430
             ILGR
Sbjct: 392 VHILGR 397

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score =  187 bits (475), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 178/366 (48%), Gaps = 22/366 (6%)
Query: 67  CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
            G R+    + S E +   L T  +G + +PL  +Y   EL + + D++  +V+     R
Sbjct: 52  VGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
           + +  +A+  GA    + P    S        S+A     +  +D A I+YTSGTTG+  
Sbjct: 112 DGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSX 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
           G + +H ++ +    L + W +T  D  +H LP++H HGLF A    L+A  ++ F+P F
Sbjct: 172 GAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
               I      +            T   GVPT YTRL+Q                   +R
Sbjct: 232 DPDXILDLMARA------------TVLMGVPTFYTRLLQS--------PRLTXETTGHMR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
           L + GS+ L     ++W   TGH +LERYGMTE  M  SNP  G R  G VG  LPGV  
Sbjct: 272 LFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSA 331
Query: 367 KIAEDESGSDA--AGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGY 424
           ++ + E+G +     +G I V  P++F  YW++P+ T   F  DGFF TGD G  DE GY
Sbjct: 332 RVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGY 391
Query: 425 YIILGR 430
             ILGR
Sbjct: 392 VHILGR 397

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score =  187 bits (474), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 178/366 (48%), Gaps = 22/366 (6%)
Query: 67  CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
            G R+    + S E +   L T  +G + +PL  +Y   EL + + D++  +V+     R
Sbjct: 52  VGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
           + +  +A+  GA    + P    S        S+A     +  +D A I+YTSGTTG+  
Sbjct: 112 DGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSX 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
           G + +H ++ +    L + W +T  D  +H LP++H HGLF A    L+A  ++ F+P F
Sbjct: 172 GAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
               I      +            T   GVPT YTRL+Q                   +R
Sbjct: 232 DPDXILDLMARA------------TVLMGVPTFYTRLLQS--------PRLTXETTGHMR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
           L + GS+ L     ++W   TGH +LERYGMTE  M  SNP  G R  G VG  LPGV  
Sbjct: 272 LFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSA 331
Query: 367 KIAEDESGSDA--AGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGY 424
           ++ + E+G +     +G I V  P++F  YW++P+ T   F  DGFF TGD G  DE GY
Sbjct: 332 RVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGY 391
Query: 425 YIILGR 430
             ILGR
Sbjct: 392 VHILGR 397

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score =  187 bits (474), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 178/366 (48%), Gaps = 22/366 (6%)
Query: 67  CGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126
            G R+    + S E +   L T  +G + +PL  +Y   EL + + D++  +V+     R
Sbjct: 52  VGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXR 111
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
           + +  +A+  GA    + P    S        S+A     +  +D A I+YTSGTTG+  
Sbjct: 112 DGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSX 171
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246
           G + +H ++ +    L + W +T  D  +H LP++H HGLF A    L+A  ++ F+P F
Sbjct: 172 GAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXF 231
Query: 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
               I      +            T   GVPT YTRL+Q                   +R
Sbjct: 232 DPDXILDLMARA------------TVLMGVPTFYTRLLQS--------PRLTXETTGHMR 271
Query: 307 LMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQV 366
           L + GS+ L     ++W   TGH +LERYGMTE  M  SNP  G R  G VG  LPGV  
Sbjct: 272 LFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSA 331
Query: 367 KIAEDESGSDA--AGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGY 424
           ++ + E+G +     +G I V  P++F  YW++P+ T   F  DGFF TGD G  DE GY
Sbjct: 332 RVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGY 391
Query: 425 YIILGR 430
             ILGR
Sbjct: 392 VHILGR 397

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 166/383 (43%), Gaps = 59/383 (15%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ ++   S EF     G    G +AVP+       E+  ++ DS   +V+       
Sbjct: 68  GDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP 127
Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFD----QSQAEKMDGQRGEDPAL--------- 174
           V+  + +++       PP        TV D     S AE++     ++PA+         
Sbjct: 128 VIDAIRAQAD------PP-------GTVTDWIGADSLAERLRSAAADEPAVECGGDDNLF 174
Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           I+YTSGTTG PKGVVHTH+S+ +         +    D+ L  LP+ HV  L   + + +
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM 234
Query: 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM--YTRLIQGYEAMDT 292
             G T+  MP+F    +W    E          E +     VP +  + R +  +  +D 
Sbjct: 235 R-GVTLISMPQFDATKVWSLIVE----------ERVCIGGAVPAILNFMRQVPEFAELDA 283
Query: 293 ELQXXXXXXXKQLRLMMCGSSALPLPVMQQW-----ETITGHRLLERYGMTEFVMAISNP 347
                        R  + G + +P  +++ +     E + G+ L E  G    +++    
Sbjct: 284 ----------PDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSED-- 331
Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTA 407
               RKAG+ G       V +  D+      G GE+ +KS  L KEYW  P+ T+D+F  
Sbjct: 332 --ALRKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD- 388
Query: 408 DGFFKTGDTGKQDEDGYYIILGR 430
           +G+F+TGD G+ D++GY  I  R
Sbjct: 389 NGWFRTGDIGEIDDEGYLYIKDR 411

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score =  122 bits (306), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 165/380 (43%), Gaps = 59/380 (15%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ ++   S EF     G    G +AVP+       E+  ++ DS   +V+       
Sbjct: 54  GDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP 113
Query: 128 VLQNVASKSGAKFSLIPPVPNVSSETTVFD----QSQAEKMDGQRGEDPAL--------- 174
           V+  + +++       PP        TV D     S AE++     ++PA+         
Sbjct: 114 VIDAIRAQAD------PP-------GTVTDWIGADSLAERLRSAAADEPAVECGGDDNLF 160
Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           I+YTSGTTG PKGVVHTH+S+ +         +    D+ L  LP+ HV  L   + + +
Sbjct: 161 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM 220
Query: 235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTM--YTRLIQGYEAMDT 292
             G T+  MP+F    +W    E          E +     VP +  + R +  +  +D 
Sbjct: 221 R-GVTLISMPQFDATKVWSLIVE----------ERVCIGGAVPAILNFMRQVPEFAELDA 269
Query: 293 ELQXXXXXXXKQLRLMMCGSSALPLPVMQQW-----ETITGHRLLERYGMTEFVMAISNP 347
                        R  + G + +P  +++ +     E + G+ L E  G    +++    
Sbjct: 270 ----------PDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSED-- 317
Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTA 407
               RKAG+ G       V +  D+      G GE+ +KS  L KEYW  P+ T+D+F  
Sbjct: 318 --ALRKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD- 374
Query: 408 DGFFKTGDTGKQDEDGYYII 427
           +G+F+TGD G+ D++GY  I
Sbjct: 375 NGWFRTGDIGEIDDEGYLYI 394

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 139/294 (47%), Gaps = 39/294 (13%)
Query: 156 FDQSQAEKMDGQRGEDPAL--IVYTSGTTGKPKGVVHTHKSI--DAQVQMLTEAWEYTSA 211
           ++++  E+ D  R  + A   + YT+GTTG PKGVV++H+++   +    L +    +  
Sbjct: 160 YEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEK 219
Query: 212 DQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAIT 271
           D  L  +P+ HV+       A L     V   P+     + + +           GE +T
Sbjct: 220 DVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFD----------GEGVT 269
Query: 272 AFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRL 331
              GVPT++  L    E+    L        K LR ++ G SA P  ++ ++E + G  +
Sbjct: 270 FTAGVPTVWLALADYLESTGHRL--------KTLRRLVVGGSAAPRSLIARFERM-GVEV 320
Query: 332 LERYGMTE--------FVMA----ISNPLRGARKAGTVGNPLPGVQVKIAEDESG---SD 376
            + YG+TE        FV +    +S   +   KA T G P+P V++++A++E      D
Sbjct: 321 RQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKT-GLPIPLVRLRVADEEGRPVPKD 379
Query: 377 AAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
              +GE+ +K P +   Y+   + T+ + T DGFF+TGD    DE+GY  I  R
Sbjct: 380 GKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDR 433

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 153/373 (41%), Gaps = 32/373 (8%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCI-AVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
           RI +V   +       LG  ++G +  V   L  P   +  + H    +++ S    + V
Sbjct: 75  RILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNV 134
Query: 129 LQNVASKSGAKFSLIPPVPNVSSETT------VFDQSQAEKMDGQRG-EDPALIVYTSGT 181
            Q + S       LI   P  S          + D +         G +D A  +Y+SG+
Sbjct: 135 TQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGS 194
Query: 182 TGKPKGVVHTHKSIDAQVQMLTEA-WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240
           TGKPKG VHTH ++    ++  +        D       L   +GL N L  PL  GAT 
Sbjct: 195 TGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATA 254
Query: 241 EFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXX 299
             M  + +   I+ R  E  P          T F GVPT+Y  ++               
Sbjct: 255 ILMAERPTADAIFARLVEHRP----------TVFYGVPTLYANMLVS--------PNLPA 296
Query: 300 XXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGN 359
                +R+      ALP  + +++    G  +L+  G TE +    +   GA + GT G 
Sbjct: 297 RADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGR 356
Query: 360 PLPGVQVKIAEDESGSDAAG--VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTG 417
           P+PG ++++  DE+G       VG++ +K PS    YW   + ++ +F  + + ++GD  
Sbjct: 357 PVPGYEIEL-RDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKY 414
Query: 418 KQDEDGYYIILGR 430
            +  +G Y+  GR
Sbjct: 415 CRLPNGCYVYAGR 427

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 158/359 (44%), Gaps = 50/359 (13%)
Query: 78  SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG 137
           S EFV   LG    G I          +EL      S   ++++   Y E +++ A +S 
Sbjct: 84  SPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD 143
Query: 138 AKFSLIPPVPNVS---SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK- 193
            K   +   P+     SE T  D+++A ++D    +D   + Y+SGTTG PKGV+ THK 
Sbjct: 144 VKVMCVDSAPDGCLHFSELTQADENEAPQVD-ISPDDVVALPYSSGTTGLPKGVMLTHKG 202
Query: 194 ---SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF---S 247
              S+  QV        + S D  L  LP+ H++ L + +L  L  GA +  MPKF   S
Sbjct: 203 LITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGS 262
Query: 248 VRGIWQRWRESY-PVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR 306
           + G+ ++++ S  PV              VP +   + +  +    +L          LR
Sbjct: 263 LLGLIEKYKVSIAPV--------------VPPVMMSIAKSPDLDKHDLS--------SLR 300
Query: 307 LMMCGSSALPLPVMQQWE-TITGH----RLLERYGMTEFVMAISNPLRGAR-----KAGT 356
           ++  G +    P+ ++ E T+       RL + YGMTE    ++  L  A+     K G 
Sbjct: 301 MIKSGGA----PLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGA 356
Query: 357 VGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKT 413
            G  +   ++KI + E+G+       GEIC++   + K Y   P+ T  +   +G+  T
Sbjct: 357 CGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHT 415

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 159/387 (41%), Gaps = 70/387 (18%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G R+ I+++   E +  +      G I +P+       E+  V+ D   S+V++  DYR+
Sbjct: 56  GDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRD 115
Query: 128 VLQNV-ASKSGAKFSL--------IPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYT 178
           ++  V  S  G K +           P  +++S+T  F   +    DG       +I++T
Sbjct: 116 IVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLASDTP-FSAPEFGAADG------FVIIHT 168
Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238
           +   G+P+G + +  ++      L +AW  T AD  L  LPL HV GL   L      GA
Sbjct: 169 AAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGA 228
Query: 239 TV---EFMPKFSVRGIWQR----WRESYPVNGNRAGEA-------ITAFTGVPTMYTRLI 284
           +V   +F P  + R I         E  P+ GN   +A       + A TG+ T  T  I
Sbjct: 229 SVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDTPET--I 286
Query: 285 QGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAI 344
           + +EA                    C       P    W T       E  G++ F    
Sbjct: 287 ERFEA-------------------TC-------PNATFWATFGQS---ETSGLSTFA--- 314
Query: 345 SNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKD 403
             P R   K  + G PL    V + + E      G VGEI ++ P++FK YW     T+ 
Sbjct: 315 --PYRDRPK--SAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQH 370
Query: 404 SFTADGFFKTGDTGKQDEDGYYIILGR 430
           +F  +G+  TGD G+ D DGY    GR
Sbjct: 371 AFR-NGWHHTGDMGRFDADGYLFYAGR 396

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 154/381 (40%), Gaps = 55/381 (14%)
Query: 66  GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
           G    +GI+ + S +   G+L    +G   VP+ + YP+  + +++ DS   M+L+ +  
Sbjct: 87  GKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHL 146
Query: 126 REVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDG------QRGEDPALIVYTS 179
             ++ N+                 + +  +F++   +  +G       +  D A ++YTS
Sbjct: 147 VHLIHNI---------------QFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTS 191
Query: 180 GTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239
           GTTG PKG +  HK I         +   T  D+      +     ++   +A L  GA+
Sbjct: 192 GTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMA-LLTGAS 250
Query: 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXX 299
           +  + K ++    +   E Y +N     + IT  T  PT    L       D E      
Sbjct: 251 LYIILKDTINDFVK--FEQY-IN----QKEITVITLPPTYVVHL-------DPERILSIQ 296
Query: 300 XXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAG---T 356
                  L+  GS+  P  V +  E +T    +  YG TE  +  +  +      G    
Sbjct: 297 T------LITAGSATSPSLVNKWKEKVT---YINAYGPTETTICATTWVATKETIGHSVP 347
Query: 357 VGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGF----- 410
           +G P+   Q+ I ++     + G  GE+C+    L + YWK P++T   F  + F     
Sbjct: 348 IGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEK 407
Query: 411 -FKTGDTGKQDEDGYYIILGR 430
            +KTGD  +   DG    LGR
Sbjct: 408 LYKTGDQARWLSDGNIEYLGR 428

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 161/393 (40%), Gaps = 64/393 (16%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           RI + ++ S +F   VLG  F G    P    Y E ELL+ M+ S  ++V  ++   + +
Sbjct: 82  RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 141
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
            NV  K      +I  +  + S+T                   F++         R +  
Sbjct: 142 LNVQKK----LPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 197
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF------LHCLPLHHVHGL 226
           ALI+ +SG+TG PKGV   H++   +    + A +    +Q       L  +P HH  G+
Sbjct: 198 ALIMNSSGSTGLPKGVALPHRTACVR---FSHARDPIFGNQIIPDTAILSVVPFHHGFGM 254
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT----- 281
           F  L   L  G  V  M +F    ++ R  + Y          I +   VPT+++     
Sbjct: 255 FTTL-GYLICGFRVVLMYRFE-EELFLRSLQDY---------KIQSALLVPTLFSFFAKS 303
Query: 282 RLIQGYEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF 340
            LI  Y+  +  E+        K++   +     LP           G R  + YG+TE 
Sbjct: 304 TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTET 350
Query: 341 VMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV---GEICVKSPSLFKEYWKL 397
             AI     G  K G VG  +P  + K+ + ++G    GV   GE+CV+ P +   Y   
Sbjct: 351 TSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGK-TLGVNQRGELCVRGPMIMSGYVNN 409
Query: 398 PKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
           P+ T      DG+  +GD    DED ++ I+ R
Sbjct: 410 PEATNALIDKDGWLHSGDIAYWDEDEHFFIVDR 442

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 158/388 (40%), Gaps = 54/388 (13%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           RI + ++ S +F   VLG  F G    P    Y E ELL+ M+ S  ++V  ++   + +
Sbjct: 77  RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 136
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
            NV  K      +I  +  + S+T                   F++         R +  
Sbjct: 137 LNVQKK----LPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 192
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF------LHCLPLHHVHGL 226
           ALI+ +SG+TG PKGV   H++   +    + A +    +Q       L  +P HH  G+
Sbjct: 193 ALIMNSSGSTGLPKGVALPHRTACVR---FSHARDPIFGNQIIPDTAILSVVPFHHGFGM 249
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
           F  L   L  G  V  M +F    ++ R  + Y +        + +F    T    LI  
Sbjct: 250 FTTL-GYLICGFRVVLMYRFE-EELFLRSLQDYKIQSALLVPTLFSFFAKST----LIDK 303
Query: 287 YEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS 345
           Y+  +  E+        K++   +     LP           G R  + YG+TE   AI 
Sbjct: 304 YDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTETTSAIL 350
Query: 346 NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV---GEICVKSPSLFKEYWKLPKVTK 402
               G  K G VG  +P  + K+ + ++G    GV   GE+CV+ P +   Y   P+ T 
Sbjct: 351 ITPEGDDKPGAVGKVVPFFEAKVVDLDTGK-TLGVNQRGELCVRGPMIMSGYVNNPEATN 409
Query: 403 DSFTADGFFKTGDTGKQDEDGYYIILGR 430
                DG+  +GD    DED ++ I+ R
Sbjct: 410 ALIDKDGWLHSGDIAYWDEDEHFFIVDR 437

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 158/388 (40%), Gaps = 54/388 (13%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           RI + ++ S +F   VLG  F G    P    Y E ELL+ M+ S  ++V  ++   + +
Sbjct: 77  RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 136
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
            NV  K      +I  +  + S+T                   F++         R +  
Sbjct: 137 LNVQKK----LPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 192
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF------LHCLPLHHVHGL 226
           ALI+ +SG+TG PKGV   H++   +    + A +    +Q       L  +P HH  G+
Sbjct: 193 ALIMNSSGSTGLPKGVALPHRTACVR---FSHARDPIFGNQIIPDTAILSVVPFHHGFGM 249
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
           F  L   L  G  V  M +F    ++ R  + Y +        + +F    T    LI  
Sbjct: 250 FTTL-GYLICGFRVVLMYRFE-EELFLRSLQDYKIQSALLVPTLFSFFAKST----LIDK 303
Query: 287 YEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS 345
           Y+  +  E+        K++   +     LP           G R  + YG+TE   AI 
Sbjct: 304 YDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTETTSAIL 350
Query: 346 NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV---GEICVKSPSLFKEYWKLPKVTK 402
               G  K G VG  +P  + K+ + ++G    GV   GE+CV+ P +   Y   P+ T 
Sbjct: 351 ITPEGDDKPGAVGKVVPFFEAKVVDLDTGK-TLGVNQRGELCVRGPMIMSGYVNNPEATN 409
Query: 403 DSFTADGFFKTGDTGKQDEDGYYIILGR 430
                DG+  +GD    DED ++ I+ R
Sbjct: 410 ALIDKDGWLHSGDIAYWDEDEHFFIVDR 437

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 160/388 (41%), Gaps = 54/388 (13%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
           RI + ++ S +F   VLG  F G    P    Y E ELL+ M+ S  ++V  ++   + +
Sbjct: 82  RIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKI 141
Query: 130 QNVASKSGAKFSLIPPVPNVSSETTV-----------------FDQSQAEKMDGQRGEDP 172
            NV  K      +I  +  + S+T                   F++         R +  
Sbjct: 142 LNVQKK----LPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI 197
Query: 173 ALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF------LHCLPLHHVHGL 226
           ALI+ +SG+TG PKGV   H+++  +    + A +    +Q       L  +P HH  G+
Sbjct: 198 ALIMNSSGSTGLPKGVALPHRALAVR---FSHARDPIFGNQIAPDTAILSVVPFHHGFGM 254
Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
           F  L   L +G  V  M +F    ++ R  + Y +        + +F    T    LI  
Sbjct: 255 FTTL-GYLISGFRVVLMYRFE-EELFLRSLQDYKIQSALLVPTLFSFLAKST----LIDK 308
Query: 287 YEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS 345
           Y+  +  E+        K++   +     LP           G R  + YG+TE   AI 
Sbjct: 309 YDLSNLHEIASGGAPLSKEVGEAVAKRFHLP-----------GIR--QGYGLTETTSAIL 355
Query: 346 NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV---GEICVKSPSLFKEYWKLPKVTK 402
              +G  K G VG  +P  + K+ + ++G    GV   GE+ V+ P +   Y   P+ T 
Sbjct: 356 ITPKGDDKPGAVGKVVPFFEAKVVDLDTGK-TLGVNQRGELSVRGPMIMSGYVNNPEATN 414
Query: 403 DSFTADGFFKTGDTGKQDEDGYYIILGR 430
                DG+  +GD    DED ++ I+ R
Sbjct: 415 ALIDKDGWLHSGDIAYWDEDEHFFIVDR 442

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 153/379 (40%), Gaps = 46/379 (12%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127
           G  +G+    S ++V  +   W      VP+   Y   EL H+++DS+ + ++      E
Sbjct: 77  GEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYE 136
Query: 128 VLQNVASKSGA-KFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
             + V  K+G  +  ++    N  SE         E +     ED ALI YT GTTG PK
Sbjct: 137 NFKPVLEKTGVERVFVVGGEVNSLSEVXDSGSEDFENVKVNPEEDVALIPYTGGTTGXPK 196
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHV--HGLFNALLAPLYAGATVEFMP 244
           GV  TH ++ A    L  A   +  D  + C P  H    GL N           V    
Sbjct: 197 GVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXFHSAEFGLVN---------LXVTVGN 247
Query: 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTG-----VPTMYTRLIQGYEAMDTELQXXXX 299
           ++ V G +         N     E I  + G     VP     L+   E+ +        
Sbjct: 248 EYVVXGXF---------NQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSY- 297
Query: 300 XXXKQLRLMMCGSSALPLPVMQQW-----ETITGHRLLER--YGMTEFVMAI-SNPLRGA 351
                L++   G+  +   ++++      E     RL     +G TE    + +NP    
Sbjct: 298 -----LKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVTTNPPLRL 352
Query: 352 RKAGTVGNPLPGVQVKIAEDESGSD--AAGVGEICVKSPSLFKEYWKLPKVTKDSFTAD- 408
            K+ T G P   +++K+   E G +      GEI ++ P++FK YWK  K  ++ +  D 
Sbjct: 353 DKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDE 412
Query: 409 ---GFFKTGDTGKQDEDGY 424
               FF+TGD G  DE+G+
Sbjct: 413 KGRKFFRTGDVGFIDEEGF 431

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 161/404 (39%), Gaps = 60/404 (14%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYP--ESELL----HVMHDSDISMVLS 121
           G R+ ++  P    +   LG  ++GCIAVP+   YP  + +LL     ++ +S   +VL 
Sbjct: 65  GDRVLLLFAPGLPLIQAFLGCLYAGCIAVPI---YPPAQEKLLDKAQRIVTNSKPVIVLX 121
Query: 122 TEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGT 181
             D+ +        +  KF  IP +   + E+   ++S + +    +  D A + YTSG+
Sbjct: 122 IADHIKKFTADELNTNPKFLKIPAI---ALESIELNRSSSWQPTSIKSNDIAFLQYTSGS 178
Query: 182 TGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG---- 237
           T  PKGV  +H ++   +  +  ++           LP HH  GL   +L P+Y G    
Sbjct: 179 TXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAI 238
Query: 238 ----------------------ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTG 275
                                 AT+   P F+     +R RE     G      +TAF G
Sbjct: 239 XXSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKK-EGLDLSSWVTAFNG 297
Query: 276 VPTMYTRLIQGYEAMDTELQXXXXXX-----XKQLRLMMCGSSALPLPVMQQWETITGHR 330
              +     + +     E               +  L++ G +         ++T+T  +
Sbjct: 298 AEPVREETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTP-----GSSYKTLTLAK 352
Query: 331 LLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSL 390
             E++       A  N   G+ K  + GNP+  V++   +     D   VGEI V+S S+
Sbjct: 353 --EQFQDHRVHFADDNS-PGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSV 409
Query: 391 FKEYWKLPKVTKDSFT--------ADGFFKTGDTGKQDEDGYYI 426
            K YW  P+ T+ +F         +  + +TGD G   E+  Y+
Sbjct: 410 AKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELYV 453

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 147/360 (40%), Gaps = 48/360 (13%)
Query: 80  EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK 139
           EFV   L   F G  A      +  +E+      S+  ++++   Y + ++ + +  G  
Sbjct: 125 EFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVV 184
Query: 140 FSLIP-----PVPNVSSETTVFDQSQAEKMDGQRG-----EDPALIVYTSGTTGKPKGVV 189
              I      P+P      T   QS  E  +         +D   + Y+SGTTG PKGV+
Sbjct: 185 IVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVM 244
Query: 190 HTHK----SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK 245
            THK    S+  QV        + S D  L  LP+ H++ L + +L  L  GA +  MPK
Sbjct: 245 LTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPK 304
Query: 246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQL 305
           F +  + +  +             +T    VP +   + +  E    +L          +
Sbjct: 305 FEINLLLELIQRC----------KVTVAPMVPPIVLAIAKSSETEKYDLS--------SI 346
Query: 306 RLMMCGSSALPLPVMQQWE-----TITGHRLLERYGMTEFVMAISNPLRGAR-----KAG 355
           R++  G++    P+ ++ E          +L + YGMTE    ++  L  A+     K+G
Sbjct: 347 RVVKSGAA----PLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSG 402
Query: 356 TVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKT 413
             G  +   ++KI + ++G   +    GEIC++   + K Y   P  T ++   DG+  T
Sbjct: 403 ACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHT 462

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 158/389 (40%), Gaps = 54/389 (13%)
Query: 69  ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
            RI + ++   EF   V+   F G    P    Y   EL+H +  S  ++V S++   + 
Sbjct: 78  GRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDK 137
Query: 129 LQNVASKSGAKFSLIPPVPNVSS------ETTV-------FDQSQAEKMDGQRGEDPALI 175
           +  V        +++     V        +T +       F  S  + ++  R E  ALI
Sbjct: 138 VITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALI 197
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF------LHCLPLHHVHGLFNA 229
           + +SG+TG PKGV  TH++I   V   + A +    +Q       L  +P HH  G+F  
Sbjct: 198 MNSSGSTGLPKGVQLTHENI---VTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTT 254
Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-----TRLI 284
           L   L  G  V  + KF      +  ++             T+   VPT++     + L+
Sbjct: 255 L-GYLICGFRVVMLTKFDEETFLKTLQDY----------KCTSVILVPTLFAILNKSELL 303
Query: 285 QGYEAMD-TELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA 343
             Y+  +  E+        K++   +     LP           G R  + YG+TE   A
Sbjct: 304 NKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP-----------GVR--QGYGLTETTSA 350
Query: 344 ISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKVT 401
           I     G  K G  G  +P  + K+ + ++         GE+CVK P L K Y   P+ T
Sbjct: 351 IIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEAT 410
Query: 402 KDSFTADGFFKTGDTGKQDEDGYYIILGR 430
           K+    +G+  TGD G  DE+ ++ I+ R
Sbjct: 411 KELIDEEGWLHTGDIGYYDEEKHFFIVDR 439

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 158/389 (40%), Gaps = 54/389 (13%)
Query: 69  ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
            RI + ++   EF   V+   F G    P    Y   EL+H +  S  ++V S++   + 
Sbjct: 78  GRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDK 137
Query: 129 LQNVASKSGAKFSLIPPVPNVSS------ETTV-------FDQSQAEKMDGQRGEDPALI 175
           +  V        +++     V        +T +       F  S  + ++  R E  ALI
Sbjct: 138 VITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALI 197
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF------LHCLPLHHVHGLFNA 229
           + +SG+TG PKGV  TH++I   V   + A +    +Q       L  +P HH  G+F  
Sbjct: 198 MNSSGSTGLPKGVQLTHENI---VTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTT 254
Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY-----TRLI 284
           L   L  G  V  + KF      +  ++             T+   VPT++     + L+
Sbjct: 255 L-GYLICGFRVVMLTKFDEETFLKTLQDY----------KCTSVILVPTLFAILNKSELL 303
Query: 285 QGYEAMD-TELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA 343
             Y+  +  E+        K++   +     LP           G R  + YG+TE   A
Sbjct: 304 NKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP-----------GVR--QGYGLTETTSA 350
Query: 344 ISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKVT 401
           I     G  K G  G  +P  + K+ + ++         GE+CVK P L K Y   P+ T
Sbjct: 351 IIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEAT 410
Query: 402 KDSFTADGFFKTGDTGKQDEDGYYIILGR 430
           K+    +G+  TGD G  DE+ ++ I+ R
Sbjct: 411 KELIDEEGWLHTGDIGYYDEEKHFFIVDR 439

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 154/393 (39%), Gaps = 55/393 (13%)
Query: 66  GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY 125
           G    I + ++ S +F   V G  F G    P    Y E EL + +  S  ++V  ++  
Sbjct: 107 GLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDIYNERELYNSLSISQPTIVFCSKRA 166
Query: 126 REVLQNVASKSGAKFSLIPPVPNV----SSETTVFDQSQAEKMDGQ-------------- 167
            + +  V  K       +P +  +    S E  +  QS    ++                
Sbjct: 167 LQKILGVQKK-------LPIIQKIVILDSREDYMGKQSMYSFIESHLPAGFNEYDYIPDS 219
Query: 168 --RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLHH 222
             R    ALI+ +SG+TG PKGV  THK+I  +     +     +       L  +P HH
Sbjct: 220 FDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHH 279
Query: 223 VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
             G+F  L   L  G  +  M +F    ++ R  + Y +        + +F    T    
Sbjct: 280 GFGMFTTL-GYLTCGFRIVLMYRFE-EELFLRSLQDYKIQSALLVPTLFSFFAKST---- 333
Query: 283 LIQGYEAMDT-ELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFV 341
           L+  Y+  +  E+        K++   +     LP           G R  + YG+TE  
Sbjct: 334 LVDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLP-----------GIR--QGYGLTETT 380
Query: 342 MAISNPLRGAR-KAGTVGNPLPGVQVKIAEDESGSDAAGV---GEICVKSPSLFKEYWKL 397
            AI    RG   K G  G  +P    KI + ++G    GV   GE+CVK P + K Y   
Sbjct: 381 SAIIITPRGRDDKPGACGKVVPFFSAKIVDLDTGK-TLGVNQRGELCVKGPMIMKGYVNN 439
Query: 398 PKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
           P+ T      DG+  +GD    D+DGY+ I+ R
Sbjct: 440 PEATSALIDKDGWLHSGDIAYYDKDGYFFIVDR 472

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 157/378 (41%), Gaps = 41/378 (10%)
Query: 65  GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124
            G G+ + +  K S E V G+LG   +G   +P+    PE  + +++ DS  + +L+ ++
Sbjct: 511 AGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQE 570
Query: 125 YREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGK 184
            +E    +       F           + T F++  ++        DPA I+YTSGTTGK
Sbjct: 571 MKEQAAELPYTGTTLFI---------DDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGK 621
Query: 185 PKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244
           PKG + TH +I   V+ + +   ++  D FL        +  F+A     YA        
Sbjct: 622 PKGNITTHANIQGLVKHV-DYMAFSDQDTFLSV-----SNYAFDAFTFDFYASMLN---- 671
Query: 245 KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQ 304
             + R I     E   ++  R  + I     V  M+        A+   L        K 
Sbjct: 672 --AARLIIA--DEHTLLDTERLTDLILQ-ENVNVMF-----ATTALFNLLTDAGEDWMKG 721
Query: 305 LRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTE---FVMA-ISNPLRGARKAGTVGN 359
           LR ++ G     +P +++   I G  +L+  YG TE   F  A + + L  +  +  +G 
Sbjct: 722 LRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGK 781
Query: 360 PLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGF------FK 412
           P+    V I  ++S     G VGE+C+    + K Y     +TK+ F  + F      ++
Sbjct: 782 PISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYR 841
Query: 413 TGDTGKQDEDGYYIILGR 430
           TGD  +   DG     GR
Sbjct: 842 TGDLARWLPDGTIEYAGR 859

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 156/404 (38%), Gaps = 84/404 (20%)
Query: 69  ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE----- 123
            RI + ++   EF   V+   F G    P    Y   EL+H +  S  ++V S++     
Sbjct: 78  GRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDK 137
Query: 124 ---------------------DYR--EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160
                                DYR  + L     ++       PP    SS  TV     
Sbjct: 138 VITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN------TPPGYQASSFKTV----- 186
Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQF------ 214
               +  R E  ALI+ +SG+TG PKGV  TH++I   V   + A +    +Q       
Sbjct: 187 ----EVDRKEQVALIMNSSGSTGLPKGVQLTHENI---VTRFSHARDPIYGNQVSPGTAV 239
Query: 215 LHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFT 274
           L  +P HH  G+F  L   L  G  V  + KF      +  ++             T   
Sbjct: 240 LTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLKTLQDY----------KCTNVI 288
Query: 275 GVPTMY-----TRLIQGYEAMD-TELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITG 328
            VPT++     + L+  Y+  +  E+        K++   +     LP           G
Sbjct: 289 LVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP-----------G 337
Query: 329 HRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVK 386
            R  + YG+TE   AI     G  K G  G  +P  + K+ + ++         GE+CVK
Sbjct: 338 VR--QGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395
Query: 387 SPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
            P L K Y   P+ TK+    +G+  TGD G  DE+ ++ I+ R
Sbjct: 396 GPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDR 439

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 170/409 (41%), Gaps = 51/409 (12%)
Query: 47  DLKTTSEKTKNENSAVLAG-GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPES 105
           DLK  S+K  N    V  G G G  + +  K  ++F   +LG    G IAVP        
Sbjct: 91  DLKYYSDKAAN--FFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTR 148
Query: 106 ELLHVMHDSDISMV--LSTEDYREVLQNVASKSG------AKFS------LIPPVPNVSS 151
           ++++ +  + + M+  ++ +D  E +    ++ G      AK         I     +  
Sbjct: 149 DIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEE 208
Query: 152 ETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSA 211
            + +F++   E     + ED  L+ ++SGT G PK V H +      +  LT  +     
Sbjct: 209 SSPIFERPTGEV--STKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHI--LTAKYWQNVE 264
Query: 212 DQFLHCLPLHHVHG--LFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAG 267
           D  LH        G  ++  L     AG  V      +F  + + ++         ++ G
Sbjct: 265 DDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK--------ASKYG 316
Query: 268 EAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETIT 327
             +T F   PT+Y  LI+         +         L+  +     L   V  ++   T
Sbjct: 317 --VTTFCAPPTIYRFLIK---------EDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT 365
Query: 328 GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAAGVGEICV- 385
           G +L+E +G TE V+ I+       K G++G P PG ++++ + D    +    GEI + 
Sbjct: 366 GIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVIN 425
Query: 386 ----KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
               K   LF  Y K P+ T++++  DG++ TGD    DEDGY   +GR
Sbjct: 426 TMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGR 473

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 166/403 (41%), Gaps = 45/403 (11%)
Query: 47  DLKTTSEKTKNENSAVLAGGCGA----RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSY 102
           +L   S++  N    VL+G CG     R+ +V     E+   +LG   +G I +P  +  
Sbjct: 78  ELSENSQQAAN----VLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 103 PESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFSLIPPVPN----VSSETTVFD 157
             +++L+ +  S    +++ ++  + +  VAS+  + +  L+    +    ++ +  + +
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNE 193
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHC 217
            S          ++ + I +TSGT+G PK   H++ S+  + +M    W    A   +  
Sbjct: 194 ASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKM-DAGWTGLQASDIMWT 252
Query: 218 LP-LHHVHGLFNALLAPLYAGAT--VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFT 274
           +     +  +  +L+ P   GA   V  +PKF    I +    SYP         I +  
Sbjct: 253 ISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT-LSSYP---------IKSMM 302
Query: 275 GVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR-LMMCGSSALPLPVMQQWETITGHRLLE 333
           G P +Y  L+Q         Q         L+  +  G S LP   ++ W   TG  + E
Sbjct: 303 GAPIVYRMLLQ---------QDLSSYKFPHLQNCVTVGESLLP-ETLENWRAQTGLDIRE 352
Query: 334 RYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSP---- 388
            YG TE  +          K G +G       V+I +D+      G  G+I ++      
Sbjct: 353 SYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRP 412
Query: 389 -SLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
             +F  Y   P  T  +   D F+  GD G +DEDGY+  +GR
Sbjct: 413 IGIFSGYVDNPDKTAANIRGD-FWLLGDRGIKDEDGYFQFMGR 454

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 166/403 (41%), Gaps = 45/403 (11%)
Query: 47  DLKTTSEKTKNENSAVLAGGCGA----RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSY 102
           +L   S++  N    VL+G CG     R+ +V     E+   +LG   +G I +P  +  
Sbjct: 78  ELSENSQQAAN----VLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 103 PESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFSLIPPVPN----VSSETTVFD 157
             +++L+ +  S    +++ ++  + +  VAS+  + +  L+    +    ++ +  + +
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNE 193
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHC 217
            S          ++ + I +TSGT+G PK   H++ S+  + +M    W    A   +  
Sbjct: 194 ASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKM-DAGWTGLQASDIMWT 252
Query: 218 LP-LHHVHGLFNALLAPLYAGAT--VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFT 274
           +     +  +  +L+ P   GA   V  +PKF    I +    SYP         I +  
Sbjct: 253 ISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT-LSSYP---------IKSMM 302
Query: 275 GVPTMYTRLIQGYEAMDTELQXXXXXXXKQLR-LMMCGSSALPLPVMQQWETITGHRLLE 333
           G P +Y  L+Q         Q         L+  +  G S LP   ++ W   TG  + E
Sbjct: 303 GAPIVYRMLLQ---------QDLSSYKFPHLQNCVTVGESLLP-ETLENWRAQTGLDIRE 352
Query: 334 RYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSP---- 388
            YG TE  +          K G +G       V+I +D+      G  G+I ++      
Sbjct: 353 SYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRP 412
Query: 389 -SLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
             +F  Y   P  T  +   D F+  GD G +DEDGY+  +GR
Sbjct: 413 IGIFSGYVDNPDKTAANIRGD-FWLLGDRGIKDEDGYFQFMGR 454

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 147/380 (38%), Gaps = 48/380 (12%)
Query: 69  ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV 128
           +R+G+    S + +  +   W +      +      +E+ + M   D+ ++  T      
Sbjct: 49  SRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELR 108
Query: 129 LQNVASKSGAKFSLIPPVPN------------VSSETTVFDQSQAEKMDGQRG-EDPALI 175
              + S    +F+      N             S+ET V  +S +  ++     +D A I
Sbjct: 109 GFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASI 168
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLY 235
           ++TSGTTG  K V  T ++  A      E+  +     +L  LP++H+ GL + LL  + 
Sbjct: 169 MFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGL-SVLLRAVI 227
Query: 236 AGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQ 295
            G TV  + KF+   I    +           E IT  + VP     L+Q        LQ
Sbjct: 228 EGFTVRIVDKFNAEQILTMIK----------NERITHISLVPQTLNWLMQQGLHEPYNLQ 277
Query: 296 XXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE----FVMAISNPLRGA 351
                  K    M+  +    LP+               +GMTE    F+ A    L   
Sbjct: 278 KILLGGAKLSATMIETALQYNLPIYNS------------FGMTETCSQFLTATPEMLHA- 324
Query: 352 RKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFF 411
            +  TVG P   V VKI       +  G GE+ +K  ++   Y   P     +F  +G+F
Sbjct: 325 -RPDTVGMPSANVDVKI----KNPNKEGHGELMIKGANVMNGYL-YPTDLTGTF-ENGYF 377
Query: 412 KTGDTGKQDEDGYYIILGRK 431
            TGD  + D +GY +I  R+
Sbjct: 378 NTGDIAEIDHEGYVMIYDRR 397

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 97/429 (22%), Positives = 169/429 (39%), Gaps = 109/429 (25%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYP-------ESELLHVMHDSDISMVL 120
           G R+ ++A+ S EFV       ++G +AVPLA+           ++L  ++     + ++
Sbjct: 73  GDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXGVGQRDSWSAKLQGLLASCQPAAII 132
Query: 121 STEDYREVLQNVASK--------SGAKFSLIP--------PVPNVSSETTVFDQSQAEKM 164
           + +++  ++ N A+         S A F  +P        PVPN                
Sbjct: 133 TGDEWLPLV-NAATHDNPELHVLSHAWFKALPEADVALQRPVPN---------------- 175
Query: 165 DGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFLHCLPLHHV 223
                 D A + YTSG+T  P+GV+ TH+ + A ++ ++ +  +    D+ +  LP +H 
Sbjct: 176 ------DIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVSWLPFYHD 229
Query: 224 HGLFNALLAPLYAGATVEFM--PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT 281
            GL   LL P+    +V+++    F+ R +  +W +   ++ NR   ++      P    
Sbjct: 230 XGLVGFLLTPVATQLSVDYLRTQDFAXRPL--QWLKL--ISKNRGTVSVA-----PPF-- 278
Query: 282 RLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLE-------- 333
               GYE     +              + G  A P+   Q  +     R +         
Sbjct: 279 ----GYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXP 334
Query: 334 RYGMTEFVMAIS-------------------------NPLRGARKAGT---VGNPLP--G 363
            YG+ E  +A+S                          P    R   T    G  LP  G
Sbjct: 335 CYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHG 394
Query: 364 VQVKIAEDESGSDAAG--VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDE 421
           ++++   +E+G   A   VG IC+  PSL   Y+   +V++D   A G+  TGD G    
Sbjct: 395 IEIR---NEAGXPVAERVVGHICISGPSLXSGYFG-DQVSQDEIAATGWLDTGDLGYL-L 449
Query: 422 DGYYIILGR 430
           DGY  + GR
Sbjct: 450 DGYLYVTGR 458

>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 153/387 (39%), Gaps = 59/387 (15%)
Query: 68  GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL-STEDYR 126
           G R+ +   P  E +  +L     G   VP+ L  P S    ++ DS  S ++    +  
Sbjct: 85  GDRVALRMSPGAEAIVAILAILKCGAAYVPVDLRNPVSRSDFILADSGASALIGEPHEGC 144
Query: 127 EVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
            V + V + + A+     P P   +              G   ED A ++YTSGTTG PK
Sbjct: 145 AVTRVVRTAAVAECKDAEPGPVTGAP-------------GPGAEDMAYVIYTSGTTGNPK 191
Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFL--HCLPLH----HVHGLFNALLAPLYAGATV 240
           GV   H ++ A +      ++++  D++L  H L        + G F+        GA +
Sbjct: 192 GVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLSFDFSVWEIWGAFS-------TGAEL 244
Query: 241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXX 300
             +P ++ R   Q       V  +R    +T     PT +  L        TE       
Sbjct: 245 VVLPHWAARTPEQ----YLAVIIDR---GVTVINQTPTAFLAL--------TEAAVRGGR 289
Query: 301 XXKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLRG----ARK 353
               LR ++ G   L  P+++ W    G    RL+  YG+TE  +  +         A+ 
Sbjct: 290 DVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITETTVFTTFEEITEAYLAQD 349
Query: 354 AGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSF------- 405
           A  +G  LP    ++  D+    A G  GE+ +    L + Y + P++T + F       
Sbjct: 350 ASIIGRALPSFGTRVVGDDGRDVAPGETGELWLSGAQLAEGYLRRPELTAEKFPEVTDEK 409
Query: 406 TADG--FFKTGDTGKQDEDGYYIILGR 430
           T +   +++TGD   +  DG +   GR
Sbjct: 410 TGESVRYYRTGDLVSELPDGRFAYEGR 436

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 126/291 (43%), Gaps = 40/291 (13%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPL-PVMQQ--WETITGHR 330
           T +  +     +  E  D             LR++  GS+  P+ P   +  W+ I   +
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRIL--GSAGEPINPEAWEWYWKKIGKEK 406
Query: 331 --LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESG-SDAAGVGEICV 385
             +++ +  TE    +  PL GA   KAG+   P  GVQ  + ++E    + A  G + +
Sbjct: 407 CPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVI 466
Query: 386 ------KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
                 ++ +LF ++ +  +    +F     + +GD  ++DEDGYY I GR
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGR 515

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 121/289 (41%), Gaps = 36/289 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
           T +  +     +  E  D             LR++   G    P      W+ I   +  
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESG-SDAAGVGEICV-- 385
           +++ +  TE    +  PL GA   KAG+   P  GVQ  + ++E    + A  G + +  
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITD 468
Query: 386 ----KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
               ++ +LF ++ +  +    +F     + +GD  ++DEDGYY I GR
Sbjct: 469 SWPGQARTLFGDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGR 515

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 121/289 (41%), Gaps = 36/289 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
           T +  +     +  E  D             LR++   G    P      W+ I   +  
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESG-SDAAGVGEICV-- 385
           +++ +  TE    +  PL GA   KAG+   P  GVQ  + ++E    + A  G + +  
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITD 468
Query: 386 ----KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
               ++ +LF ++ +  +    +F     + +GD  ++DEDGYY I GR
Sbjct: 469 SWPGQARTLFGDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGR 515

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 121/289 (41%), Gaps = 36/289 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
           T +  +     +  E  D             LR++   G    P      W+ I   +  
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESG-SDAAGVGEICV-- 385
           +++ +  TE    +  PL GA   KAG+   P  GVQ  + ++E    + A  G + +  
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITD 468
Query: 386 ----KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
               ++ +LF ++ +  +    +F     + +GD  ++DEDGYY I GR
Sbjct: 469 SWPGQARTLFGDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGR 515

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 121/289 (41%), Gaps = 36/289 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
           T +  +     +  E  D             LR++   G    P      W+ I   +  
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESG-SDAAGVGEICV-- 385
           +++ +  TE    +  PL GA   KAG+   P  GVQ  + ++E    + A  G + +  
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITD 468
Query: 386 ----KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
               ++ +LF ++ +  +    +F     + +GD  ++DEDGYY I GR
Sbjct: 469 SWPGQARTLFGDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGR 515

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 121/289 (41%), Gaps = 36/289 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
           T +  +     +  E  D             LR++   G    P      W+ I   +  
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESG-SDAAGVGEICV-- 385
           +++ +  TE    +  PL GA   KAG+   P  GVQ  + ++E    + A  G + +  
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITD 468
Query: 386 ----KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
               ++ +LF ++ +  +    +F     + +GD  ++DEDGYY I GR
Sbjct: 469 SWPGQARTLFGDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGR 515

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 121/289 (41%), Gaps = 36/289 (12%)
Query: 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLH 216
           + Q E M+    EDP  I+YTSG+TGKPKGV+HT    +          ++Y   D +  
Sbjct: 247 EHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWC 303
Query: 217 CLPLHHVHGLFNALLAPLYAGATV---EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAF 273
              +  V G    L  PL  GAT    E +P +         R    V+ ++     TA 
Sbjct: 304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPA-----RMCQVVDKHQVNILYTAP 358
Query: 274 TGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLM-MCGSSALPLPVMQQWETITGHR-- 330
           T +  +     +  E  D             LR++   G    P      W+ I   +  
Sbjct: 359 TAIRALMAEGDKAIEGTD----------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCP 408
Query: 331 LLERYGMTEFVMAISNPLRGA--RKAGTVGNPLPGVQVKIAEDESG-SDAAGVGEICV-- 385
           +++ +  TE    +  PL GA   KAG+   P  GVQ  + ++E    + A  G + +  
Sbjct: 409 VVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITD 468
Query: 386 ----KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
               ++ +LF ++ +  +    +F     + +GD  ++DEDGYY I GR
Sbjct: 469 SWPGQARTLFGDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGR 515

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 111/258 (43%), Gaps = 20/258 (7%)
Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLAPLYA 236
           + GTTG PK +  TH      V+   E  ++T   ++L  +P  H + + +   L    A
Sbjct: 192 SGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLA 251
Query: 237 GATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQX 296
           G TV      S    +    E + VN       +TA   VP   +  +Q     ++  Q 
Sbjct: 252 GGTVVLAADPSATLCFP-LIEKHQVN-------VTAL--VPPAVSLWLQALIEGESRAQL 301
Query: 297 XXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKA-G 355
                   L+L+  G + L   +  +     G +L + +GM E ++  +     A K   
Sbjct: 302 A------SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIH 355
Query: 356 TVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKT 413
           T G P+ P  +V +A+ E      G VG +  + P  F+ Y+K P+    +F A+GF+ +
Sbjct: 356 TQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCS 415
Query: 414 GDTGKQDEDGYYIILGRK 431
           GD    D +GY  + GR+
Sbjct: 416 GDLISIDPEGYITVQGRE 433

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 147/364 (40%), Gaps = 35/364 (9%)
Query: 80  EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSD-----ISMVLSTEDYREVLQNVAS 134
           EF   +   +  G + V    S+  SE+ +    ++     I    S  DYR + + V S
Sbjct: 87  EFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQS 146
Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAE--KMDGQRGEDPALIVYTSGTTGKPKGVVHTH 192
           K     ++I  V   + E    +    E  K+   +  D A +  + G+TG  K +  TH
Sbjct: 147 KLPTLKNII--VAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTH 204
Query: 193 KSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLAPLYAGATVEFMPKFSVRGI 251
                 ++   E      +  +L  LP+ H + L +  +L  LYAG  V   P  S    
Sbjct: 205 DDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPD-- 262
Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCG 311
                +++P+   R    ITA   VP +    +    +   +L          L+++  G
Sbjct: 263 -----DAFPLI-EREKVTITAL--VPPLAMVWMDAASSRRDDLS--------SLQVLQVG 306
Query: 312 SSALPLPVMQQWETITGHRLLERYGMTEFVM---AISNPLRGARKAGTVGNPL-PGVQVK 367
            +       ++ + + G  L + +GM E ++    + +P        T G P+ P  + +
Sbjct: 307 GAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEII--VNTQGKPMSPYDESR 364
Query: 368 IAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYI 426
           + +D       G  G +  + P   + Y+K  +    SFT DGF++TGD  +   DGY +
Sbjct: 365 VWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIV 424
Query: 427 ILGR 430
           + GR
Sbjct: 425 VEGR 428

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 148/388 (38%), Gaps = 70/388 (18%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
           R+ +VA  S + V  +L     G +   L      +EL  ++   +++  +         
Sbjct: 56  RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
               S    R +      + G  +S  PP+ +   E                   PA I 
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PK  +   ++ +++V  ++      +   +  L  +PL+HV G F  L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATV----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
               T     EF P  +++ + Q              E +T+    PT    L       
Sbjct: 220 ALDGTYVVVEEFRPVDALQLVQQ--------------EQVTSLFATPTHLDALAAAAAHA 265
Query: 291 DTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLER---YGMTEFVMAISNP 347
            + L+         LR +    + +P  V+   ET+  H   E+   YG TE   A+++ 
Sbjct: 266 GSSLK------LDSLRHVTFAGATMPDAVL---ETVHQHLPGEKVNGYGTTE---AMNSL 313
Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSD---AAG-VGEICV-KSPSLFKEYWKLPKVTK 402
                K GT   P    +V+I     G D   A G  GE+ V  S S F  Y   P+ T 
Sbjct: 314 YMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATA 373
Query: 403 DSFTADGFFKTGDTGKQDEDGYYIILGR 430
           +    DG+++T D      +G   ILGR
Sbjct: 374 EKLQ-DGWYRTSDVAVWTPEGTVRILGR 400

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 113/281 (40%), Gaps = 38/281 (13%)
Query: 170 EDPALIVYTSGTTGKPKGVVH-THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
           EDP  ++YTSG+TG PKGV H T   +   +  +   ++    D F     +  + G   
Sbjct: 262 EDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTY 321
Query: 229 ALLAPL-YAGATVEF-----MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
            +  PL Y  AT+ F      P +S    W    E            +T F   PT   R
Sbjct: 322 VVYGPLLYGCATLVFEGTPAYPNYS--RYWDIIDE----------HKVTQFYVAPTAL-R 368
Query: 283 LIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHR---LLERYGMTE 339
           L++   A D+ ++       K LR +      +   V + +    G     +++ Y  TE
Sbjct: 369 LLK--RAGDSYIENHSL---KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTE 423
Query: 340 FVMAISNPLRGA---RKAGTVGNPLPGVQVKIAEDESG-----SDAAGVGEICVKSPSLF 391
               +  PL G     K G+   P  G+   + +  +G     S A GV  +    PS  
Sbjct: 424 SGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFA 483
Query: 392 KEYWKLPKVTKDSFTAD--GFFKTGDTGKQDEDGYYIILGR 430
           +  WK      D++     G++ TGD   +D+DGY  ILGR
Sbjct: 484 RTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGR 524

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 148/388 (38%), Gaps = 70/388 (18%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
           R+ +VA  S + V  +L     G +   L      +EL  ++   +++  +         
Sbjct: 56  RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
               S    R +      + G  +S  PP+ +   E                   PA I 
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PK  +   ++ +++V  ++      +   +  L  +PL+HV G F  L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATV----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
               T     EF P  +++ + Q              E +T+    PT    L       
Sbjct: 220 ALDGTYVVVEEFRPVDALQLVQQ--------------EQVTSLFATPTHLDALAAAAAHA 265
Query: 291 DTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLER---YGMTEFVMAISNP 347
            + L+         LR +    + +P  V+   ET+  H   E+   YG TE   A+++ 
Sbjct: 266 GSSLK------LDSLRHVTFAGATMPDAVL---ETVHQHLPGEKVNAYGTTE---AMNSL 313
Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSD---AAG-VGEICV-KSPSLFKEYWKLPKVTK 402
                K GT   P    +V+I     G D   A G  GE+ V  S S F  Y   P+ T 
Sbjct: 314 YMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATA 373
Query: 403 DSFTADGFFKTGDTGKQDEDGYYIILGR 430
           +    DG+++T D      +G   ILGR
Sbjct: 374 EKLQ-DGWYRTSDVAVWTPEGTVRILGR 400

>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp Ligase Faal28 From Mycobacterium Tuberculosis Length = 480

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 97/424 (22%), Positives = 156/424 (36%), Gaps = 80/424 (18%)
Query: 65  GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLH-----VMHDSDISMV 119
           G  G R+ I A    E+V   LG   +G IAVPL  S P+  +       V+ DS    +
Sbjct: 79  GSTGDRVVISAPQGLEYVVAFLGALQAGRIAVPL--SVPQGGVTDERSDSVLSDSSPVAI 136
Query: 120 LSTED-YREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDP--ALIV 176
           L+T     +V+Q+VA + G         P    E  + D         +  E P  A + 
Sbjct: 137 LTTSSAVDDVVQHVARRPGES-------PPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQ 189
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD-------QFLHCLPLHHVHGLFNA 229
           YTSG+T  P GVV +H+++    + L   + +   D         +  LP +H  GL   
Sbjct: 190 YTSGSTRTPAGVVXSHQNVRVNFEQLXSGY-FADTDGIPPPNSALVSWLPFYHDXGLVIG 248
Query: 230 LLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289
           + AP+  G         S      RW        +       AF+  P     L     A
Sbjct: 249 ICAPILGGYPAVLTSPVSFLQRPARWX-------HLXASDFHAFSAAPNFAFEL----AA 297
Query: 290 MDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQW-ETITGHRLLER-----YGMTEFVMA 343
             T            +  ++ GS  +    ++++ +      L ER     YG+ E  + 
Sbjct: 298 RRTTDDDXAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYGLAEATVY 357
Query: 344 ISN-----------------------PLRGARKAGTVGNPLPGVQ-VKIAEDESGSDA-- 377
           ++                        P  G      +   LP    V+I + ++  +   
Sbjct: 358 VATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYXLPRSPIVRIVDSDTCIECPD 417
Query: 378 AGVGEICVKSPSLFKEYWKLPKVTKDSF----------TADG-FFKTGDTGKQDEDGYYI 426
             VGEI V   ++   YW+ P  ++ +F          T +G + +TGD+G    DG   
Sbjct: 418 GTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFV-TDGKXF 476
Query: 427 ILGR 430
           I+GR
Sbjct: 477 IIGR 480

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 145/388 (37%), Gaps = 70/388 (18%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
           R+ +VA  S + V  +L     G +   L      +EL  ++   +++  +         
Sbjct: 56  RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
               S    R +      + G  +S  PP+ +   E                   PA I 
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PK  +   ++ +++V  ++      +   +  L  +PL+HV G F  L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATV----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
               T     EF P  +++ + Q              E +T+    PT    L       
Sbjct: 220 ALDGTYVVVEEFRPVDALQLVQQ--------------EQVTSLFATPTHLDALAAAAAHA 265
Query: 291 DTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLER---YGMTEFVMAISNP 347
            + L+         LR +    + +P  V+   ET+  H   E+   YG TE   A+++ 
Sbjct: 266 GSSLK------LDSLRHVTFAGATMPDAVL---ETVHQHLPGEKVNIYGTTE---AMNSL 313
Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSD-AAGVGE----ICVKSPSLFKEYWKLPKVTK 402
                K GT   P    +V+I     G D     GE    I   S S F  Y   P+ T 
Sbjct: 314 YMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATA 373
Query: 403 DSFTADGFFKTGDTGKQDEDGYYIILGR 430
           +    DG+++T D      +G   ILGR
Sbjct: 374 EKLQ-DGWYRTSDVAVWTPEGTVRILGR 400

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 145/388 (37%), Gaps = 70/388 (18%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
           R+ +VA  S + V  +L     G +   L      +EL  ++   +++  +         
Sbjct: 56  RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
               S    R +      + G  +S  PP+ +   E                   PA I 
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PK  +   ++ +++V  ++      +   +  L  +PL+HV G F  L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATV----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
               T     EF P  +++ + Q              E +T+    PT    L       
Sbjct: 220 ALDGTYVVVEEFRPVDALQLVQQ--------------EQVTSLFATPTHLDALAAAAAHA 265
Query: 291 DTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLER---YGMTEFVMAISNP 347
            + L+         LR +    + +P  V+   ET+  H   E+   YG TE   A+++ 
Sbjct: 266 GSSLK------LDSLRHVTFAGATMPDAVL---ETVHQHLPGEKVNIYGTTE---AMNSL 313
Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSD-AAGVGE----ICVKSPSLFKEYWKLPKVTK 402
                K GT   P    +V+I     G D     GE    I   S S F  Y   P+ T 
Sbjct: 314 YMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATA 373
Query: 403 DSFTADGFFKTGDTGKQDEDGYYIILGR 430
           +    DG+++T D      +G   ILGR
Sbjct: 374 EKLQ-DGWYRTSDVAVWTPEGTVRILGR 400

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 148/388 (38%), Gaps = 70/388 (18%)
Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL--------- 120
           R+ +VA  S + V  +L     G +   L      +EL  ++   +++  +         
Sbjct: 56  RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 121 ----STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIV 176
               S    R +      + G  +S  PP+ +   E                   PA I 
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA----------------QPAFIF 159
Query: 177 YTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPL 234
           YTSGTTG PK  +   ++ +++V  ++      +   +  L  +PL+HV G F  L+A L
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 235 YAGATV----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAM 290
               T     EF P  +++ + Q              E +T+    PT    L       
Sbjct: 220 ALDGTYVVIEEFRPVDALQLVQQ--------------EQVTSLFATPTHLDALAAAAAHA 265
Query: 291 DTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLER---YGMTEFVMAISNP 347
            + L+         LR +    + +P  V+   ET+  H   E+   YG TE   A+++ 
Sbjct: 266 GSSLK------LDSLRHVTFAGATMPDAVL---ETVHQHLPGEKVNIYGTTE---AMNSL 313
Query: 348 LRGARKAGTVGNPLPGVQVKIAEDESGSD---AAG-VGEICV-KSPSLFKEYWKLPKVTK 402
                K GT   P    +V+I     G D   A G  GE+ V  S S F  Y   P+ T 
Sbjct: 314 YMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPEATA 373
Query: 403 DSFTADGFFKTGDTGKQDEDGYYIILGR 430
           +    DG+++T D      +G   ILGR
Sbjct: 374 EKLQ-DGWYRTSDVAVWTPEGTVRILGR 400

>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w Mutant From Mycobacterium Tuberculosis Length = 480

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 80/189 (42%), Gaps = 25/189 (13%)
Query: 64  AGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLH-----VMHDSDISM 118
            G  G R+ I A    E+V   LG   +G IAVPL  S P+  +       V+ DS    
Sbjct: 78  CGSTGDRVVISAPQGLEYVVAFLGALQAGRIAVPL--SVPQGGVTDERSDSVLSDSSPVA 135
Query: 119 VLSTED-YREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDP--ALI 175
           +L+T     +V+Q+VA + G         P    E  + D         +  E P  A +
Sbjct: 136 ILTTSSAVDDVVQHVARRPGES-------PPSIIEVDLLDLDAPNGYTFKEDEYPSTAYL 188
Query: 176 VYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSAD-------QFLHCLPLHHVHGLFN 228
            YTSG+T  P GVV +H+++    + L   + +   D         +  LP +H  GL  
Sbjct: 189 QYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FADTDGIPPPNSALVSWLPFYHDMGLVI 247
Query: 229 ALLAPLYAG 237
            + AP+  G
Sbjct: 248 GICAPILGG 256

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 143/363 (39%), Gaps = 33/363 (9%)
Query: 80  EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSD-----ISMVLSTEDYREVLQNVAS 134
           EF   +   +  G + V    S+  SE+ +    ++     I    S  DYR + + V S
Sbjct: 87  EFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQS 146
Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAE--KMDGQRGEDPALIVYTSGTTGKPKGVVHTH 192
           K     ++I  V   + E    +    E  K+   +  D A +  + G+TG  K +  TH
Sbjct: 147 KLPTLKNII--VAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTH 204
Query: 193 KSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLAPLYAGATVEFMPKFSVRGI 251
                 ++   E      +  +L  LP  H + L +  +L  LYAG  V   P  S    
Sbjct: 205 DDYIYSLKRSVEVCWLDHSTVYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPD-- 262
Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCG 311
                +++P+   R    ITA   VP +         +   +L          L+++  G
Sbjct: 263 -----DAFPLI-EREKVTITAL--VPPLAXVWXDAASSRRDDLS--------SLQVLQVG 306
Query: 312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARK--AGTVGNPL-PGVQVKI 368
            +       ++ + + G  L + +G  E ++  +  L    +    T G P  P  + ++
Sbjct: 307 GAKFSAEAARRVKAVFGCTLQQVFGXAEGLVNYTR-LDDPEEIIVNTQGKPXSPYDESRV 365
Query: 369 AEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYII 427
            +D       G  G +  + P   + Y+K  +    SFT DGF++TGD  +   DGY ++
Sbjct: 366 WDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425
Query: 428 LGR 430
            GR
Sbjct: 426 EGR 428

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 115/281 (40%), Gaps = 47/281 (16%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ-FLHCLPLH-HVHG-- 225
           ED A +++TSG+TG+PKGV+  H+++      L + +     D+ FL C P+     G  
Sbjct: 214 EDVACVMFTSGSTGRPKGVMSPHRALTG--TYLGQDYAGFGPDEVFLQCSPVSWDAFGLE 271
Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
           LF ALL              F  R + Q  +   P+     GE + A  GV      ++Q
Sbjct: 272 LFGALL--------------FGARCVLQSGQNPDPLE---IGE-LVARHGV-----TMLQ 308
Query: 286 GYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQ-------WETITGHRLLERYGMT 338
              ++   L        + +R  + G     +P + +            G+   E  G T
Sbjct: 309 LSASLFNFLVDEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFT 368
Query: 339 EFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKL 397
                ++  L G   A  +G PL G +  + +D+    A G +GE+ V    L   Y   
Sbjct: 369 THHAVVAGDLSG--TALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSR 426
Query: 398 PKVTKDSFTADGF--------FKTGDTGKQDEDGYYIILGR 430
           P +T + F AD F        ++TGD  ++  DG    +GR
Sbjct: 427 PALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467

>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 115/281 (40%), Gaps = 47/281 (16%)
Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQ-FLHCLPLH-HVHG-- 225
           ED A +++TSG+TG+PKGV+  H+++      L + +     D+ FL C P+     G  
Sbjct: 214 EDVACVMFTSGSTGRPKGVMSPHRALTG--TYLGQDYAGFGPDEVFLQCSPVSWDAFGLE 271
Query: 226 LFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
           LF ALL              F  R + Q  +   P+     GE + A  GV      ++Q
Sbjct: 272 LFGALL--------------FGARCVLQSGQNPDPLE---IGE-LVARHGV-----TMLQ 308
Query: 286 GYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQ-------WETITGHRLLERYGMT 338
              ++   L        + +R  + G     +P + +            G+   E  G T
Sbjct: 309 LSASLFNFLVDEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFT 368
Query: 339 EFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKL 397
                ++  L G   A  +G PL G +  + +D+    A G +GE+ V    L   Y   
Sbjct: 369 THHAVVAGDLSG--TALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSR 426
Query: 398 PKVTKDSFTADGF--------FKTGDTGKQDEDGYYIILGR 430
           P +T + F AD F        ++TGD  ++  DG    +GR
Sbjct: 427 PALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 108/269 (40%), Gaps = 28/269 (10%)
Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
            ++ A    + G+TG PK +  TH   D  V+   E     S  + L  LP  H   L +
Sbjct: 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSS 249
Query: 229 -ALLAPLYAGATVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLI 284
              L  L+AG  V   P     +   I QR +             +   + VP+     +
Sbjct: 250 PGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQ-------------VNMASLVPSAVIMWL 296
Query: 285 QGYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAI 344
           +       ++Q         L+L+  G ++ P  + +Q   +   +L + +GM E ++  
Sbjct: 297 EKAAQYKDQIQS--------LKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNY 348
Query: 345 SNPLRGARKAGTV-GNPLPGV-QVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVT 401
           +       +  T  G P+    ++KI +++      G +G +  + P  F  Y++ P+  
Sbjct: 349 TRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHN 408
Query: 402 KDSFTADGFFKTGDTGKQDEDGYYIILGR 430
              F  D ++ +GD  ++  DG   ++GR
Sbjct: 409 SQVFDEDNYYYSGDLVQRTPDGNLRVVGR 437

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 110/273 (40%), Gaps = 41/273 (15%)
Query: 172 PALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNA 229
           PA I YTSGTTG PK  +   ++ +++V   +      +   +  L   PL+HV G F  
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVVGFFAV 214
Query: 230 LLAPLYAGATV----EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
           L+A L    T     EF P  +++ + Q              E +T+    PT    L  
Sbjct: 215 LVAALALDGTYVVVEEFRPVDALQLVQQ--------------EQVTSLFATPTHLDALAA 260
Query: 286 GYEAMDTELQXXXXXXXKQLRLMMCGSSALPLPVMQQWETITGHRLLER---YGMTEFVM 342
                 + L+         LR +    +  P  V+   ET+  H   E+   YG TE   
Sbjct: 261 AAAHAGSSLK------LDSLRHVTFAGATXPDAVL---ETVHQHLPGEKVNIYGTTE--- 308
Query: 343 AISNPLRGARKAGTVGNPLPGVQVKIAEDESGSD---AAG-VGEICV-KSPSLFKEYWKL 397
           A ++      K GT   P    +V+I     G D   A G  GE+ V  S S F  Y   
Sbjct: 309 AXNSLYXRQPKTGTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQ 368
Query: 398 PKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
           P+ T +    DG+++T D      +G   ILGR
Sbjct: 369 PQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGR 400

>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/365 (20%), Positives = 146/365 (40%), Gaps = 39/365 (10%)
Query: 78  SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG 137
           +++ +A  +    SG   +P+ +      +L ++  +  S++++ E++   ++ ++  S 
Sbjct: 64  TYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGISLVSL 123
Query: 138 AKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA 197
           ++            E+    +   E+    +G+D   I++TSGTTG+PKGV  +H ++ +
Sbjct: 124 SEI-----------ESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLS 172
Query: 198 QVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPLYA-GATVEFMPKFSVRGIWQR 254
               + E  A++     Q L   P  +   L     AP  A G T+  +PK  V    Q 
Sbjct: 173 FTNWMIEDAAFDVPKQPQMLAQPP--YSFDLSVMYWAPTLALGGTLFALPKELVADFKQL 230
Query: 255 WRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSA 314
           +          A   +  +T  P+     +   +    ++            L +  +  
Sbjct: 231 FT-------TIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARK 283
Query: 315 LPLPVMQQWETITGHRLLERYGMTEFVMA-----ISNPLRGARKAGTVGNPLPGVQVKIA 369
           L       +E     +++  YG TE  +A     I+  +        +G P P     I 
Sbjct: 284 L-------FERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYII 336
Query: 370 EDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKD---SFTADGFFKTGDTGKQDEDGYY 425
           +++    ++G  GEI V  P++ K Y   P+ T +   +F     + TGD G   ED   
Sbjct: 337 DEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNIL 396
Query: 426 IILGR 430
           +  GR
Sbjct: 397 LYGGR 401

>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 147/363 (40%), Gaps = 46/363 (12%)
Query: 82  VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFS 141
           +   LG+  +G   +P+ LS P   +  ++  S   +++        +  V  +      
Sbjct: 66  IVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLS--IDAVGQQ------ 117
Query: 142 LIPPVPNVSSETTVFDQSQAEKMDGQRGEDPAL-IVYTSGTTGKPKGVVHTHKSIDAQVQ 200
               +  VS+E  + ++  +   D    E     I+YTSG+TG PKGV  +  ++ +   
Sbjct: 118 ----IQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTD 173
Query: 201 MLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV---RGIWQRWRE 257
            +   +  +    FL+  P      + + L   L +G T+  + K +V   + +++  ++
Sbjct: 174 WICADFPVSGGKIFLNQAPFSFDLSVMD-LYPCLQSGGTLHCVTKDAVNKPKVLFEELKK 232
Query: 258 SYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSALPL 317
           S           +  +T  P+     +     MD                M CG   LP+
Sbjct: 233 S----------GLNVWTSTPSFVQMCL-----MDPGFSQDLLPHAD--TFMFCGE-VLPV 274
Query: 318 PVMQQW-ETITGHRLLERYGMTEFVMA-----ISNPLRGARKAGTVGNPLPGVQVKIAED 371
            V +   E     ++   YG TE  +A     I+N +    ++  VG   P + + I ++
Sbjct: 275 SVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDE 334
Query: 372 ESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDS-FTADG--FFKTGDTGKQDEDGYYII 427
           E      G  GEI +  PS+ + Y   P++T+ + F+ +G   ++TGD G   +DG    
Sbjct: 335 EGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGF-IQDGQIFC 393
Query: 428 LGR 430
            GR
Sbjct: 394 QGR 396

>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 145/366 (39%), Gaps = 46/366 (12%)
Query: 80  EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE--DYREVLQNVASKSG 137
           E +   LG   +G   +P+ LS P   +  +  +S   ++LS       ++   + S+  
Sbjct: 63  EMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDN 122
Query: 138 AK---FSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
            K   F+     PN   E  V            +G++   I+YTSG+TG PKGV  T+  
Sbjct: 123 LKDIFFTHKGNTPN--PEHAV------------KGDENFYIIYTSGSTGNPKGVQITYNC 168
Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQR 254
           + +  +   E +   +   FL+  P      + + +   L  G T+  + K     +  R
Sbjct: 169 LVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMD-IYPSLVTGGTLWAIDK----DMIAR 223
Query: 255 WRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSA 314
            ++ +    +     I  +T  P+     +     M+           K    + CG   
Sbjct: 224 PKDLF---ASLEQSDIQVWTSTPSFAEMCL-----MEASFSESMLPNMKT--FLFCG-EV 272
Query: 315 LPLPVMQQW-ETITGHRLLERYGMTEFVMA-----ISNPLRGARKAGTVGNPLPGVQVKI 368
           LP  V ++  E      ++  YG TE  +A     ++  +    K+  VG      ++ I
Sbjct: 273 LPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLI 332
Query: 369 -AEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTA-DG--FFKTGDTGKQDEDGY 424
             ED + +     GEI +  PS+   Y   P++T+ +FT  DG   +KTGD G   E+G 
Sbjct: 333 MKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGL 391
Query: 425 YIILGR 430
               GR
Sbjct: 392 LFYNGR 397

>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 145/366 (39%), Gaps = 46/366 (12%)
Query: 80  EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE--DYREVLQNVASKSG 137
           E +   LG   +G   +P+ LS P   +  +  +S   ++LS       ++   + S+  
Sbjct: 63  EMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDN 122
Query: 138 AK---FSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
            K   F+     PN   E  V            +G++   I+YTSG+TG PKGV  T+  
Sbjct: 123 LKDIFFTHKGNTPN--PEHAV------------KGDENFYIIYTSGSTGNPKGVQITYNC 168
Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQR 254
           + +  +   E +   +   FL+  P      + + +   L  G T+  + K     +  R
Sbjct: 169 LVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMD-IYPSLVTGGTLWAIDK----DMIAR 223
Query: 255 WRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQXXXXXXXKQLRLMMCGSSA 314
            ++ +    +     I  +T  P+     +     M+           K    + CG   
Sbjct: 224 PKDLF---ASLEQSDIQVWTSTPSFAEMCL-----MEASFSESMLPNMKT--FLFCG-EV 272
Query: 315 LPLPVMQQW-ETITGHRLLERYGMTEFVMA-----ISNPLRGARKAGTVGNPLPGVQVKI 368
           LP  V ++  E      ++  YG TE  +A     ++  +    K+  VG      ++ I
Sbjct: 273 LPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLI 332
Query: 369 -AEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTA-DG--FFKTGDTGKQDEDGY 424
             ED + +     GEI +  PS+   Y   P++T+ +FT  DG   +KTGD G   E+G 
Sbjct: 333 MKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGL 391
Query: 425 YIILGR 430
               GR
Sbjct: 392 LFYNGR 397

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	435
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-144
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-124
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	2e-98
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	1e-95
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	1e-93
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	2e-93
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	4e-89
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	7e-89
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	3e-85
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	5e-82
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-81
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	2e-80
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	2e-80
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	3e-80
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	4e-72
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	4e-61
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	1e-51
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	3e-50
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	3e-49
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-48
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	4e-43
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	2e-33
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-31
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	2e-29
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	5e-29
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	9e-29
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	7e-28
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-26
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	3e-23
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	6e-09
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	1e-07
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	8e-09
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	5e-08
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	1e-06
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	1e-06
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	2e-06

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  419 bits (1079), Expect = e-144
 Identities = 142/421 (33%), Positives = 204/421 (48%), Gaps = 59/421 (14%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A+R  ++S +Y +LA++A   +  +                      G   R+ + A
Sbjct: 38  DRPALRFGERSLTYAELAAAAGATAGRI----------------------GGAGRVAVWA 75

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
            P+ E    V+    +G  AVPL     + EL H++ DS  S+VL+  D           
Sbjct: 76  TPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPD----------- 124

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                 L P +  +           A   DG    DPAL+VYTSGTTG PKG V   +++
Sbjct: 125 ----AELPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRAL 180

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRW 255
              +  L +AW++T  D  +  LPL HVHGL   +L PL  G +V  + +FS  G  +  
Sbjct: 181 ATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL 240

Query: 256 RESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315
            +             T   GVPTMY R+ +   A     +A +       RL++ GS+AL
Sbjct: 241 NDG-----------ATMLFGVPTMYHRIAETLPADPELAKALAG-----ARLLVSGSAAL 284

Query: 316 PLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGS 375
           P+   ++    TG R++ERYGMTE +M  S    G  +AGTVG PLPGV++++  +E G+
Sbjct: 285 PVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLV-EEDGT 343

Query: 376 DAA-----GVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
             A      VGEI V+ P+LF EY   P  T  +FT DGFF+TGD   +D DGY  I+GR
Sbjct: 344 PIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGR 403

Query: 431 K 431
           K
Sbjct: 404 K 404

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  369 bits (949), Expect = e-124
 Identities = 138/420 (32%), Positives = 202/420 (48%), Gaps = 40/420 (9%)

Query: 15  RDSVAIR-ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
              +AI  A     SY +L + A R++++L +  L+                  G R+  
Sbjct: 16  PHKLAIETAAGDKISYAELVARAGRVANVLVARGLQV-----------------GDRVAA 58

Query: 74  VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
             + S E +   L T  +G + +PL  +Y   EL + + D++  +V+     R+ +  +A
Sbjct: 59  QTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIA 118

Query: 134 SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK 193
           +K GA    + P    S        S+A     +  +D A I+YTSGTTG+ KG + +H 
Sbjct: 119 AKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHD 178

Query: 194 SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQ 253
           ++ +    L + W +T  D  +H LP++H HGLF A    L+A  ++ F+PKF    I  
Sbjct: 179 NLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILD 238

Query: 254 RWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313
                            T   GVPT YTRL+Q                   +RL + GS+
Sbjct: 239 LM------------ARATVLMGVPTFYTRLLQSPRLTKETTGH--------MRLFISGSA 278

Query: 314 ALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDES 373
            L     ++W   TGH +LERYGMTE  M  SNP  G R  G VG  LPGV  ++ + E+
Sbjct: 279 PLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPET 338

Query: 374 GSDAAG--VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
           G +     +G I VK P++FK YW++P+ TK  F  DGFF TGD GK DE GY  ILGR 
Sbjct: 339 GKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRG 398

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  302 bits (776), Expect = 2e-98
 Identities = 88/431 (20%), Positives = 157/431 (36%), Gaps = 64/431 (14%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
             +AI   Q+SY+Y  L   A  ++                      L     +R+G+  
Sbjct: 16  HHIAITDGQESYTYQNLYCEASLLA--------------------KRLKAYQQSRVGLYI 55

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S + +  +   W +      +      +E+ + M   D+ ++  T         + S 
Sbjct: 56  DNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL 115

Query: 136 SGAKF---SLIPPVPNVSSETTVFDQSQAEKMDGQR----------GEDPALIVYTSGTT 182
              +F    +       ++    +D S    +  +            +D A I++TSGTT
Sbjct: 116 DDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTT 175

Query: 183 GKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF 242
           G  K V  T ++  A      E+  +     +L  LP++H+ GL + LL  +  G TV  
Sbjct: 176 GPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGL-SVLLRAVIEGFTVRI 234

Query: 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302
           + KF+   I    +           E IT  + VP     L+Q       +      +  
Sbjct: 235 VDKFNAEQILTMIKN----------ERITHISLVPQTLNWLMQ-------QGLHEPYN-- 275

Query: 303 KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF--VMAISNPLRGARKAGTVGNP 360
             L+ ++ G + L   +++         +   +GMTE       + P     +  TVG P
Sbjct: 276 --LQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMP 332

Query: 361 LPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQD 420
              V VKI          G GE+ +K  ++   Y         +F  +G+F TGD  + D
Sbjct: 333 SANVDVKIKNPNKE----GHGELMIKGANVMNGYLYPTD-LTGTF-ENGYFNTGDIAEID 386

Query: 421 EDGYYIILGRK 431
            +GY +I  R+
Sbjct: 387 HEGYVMIYDRR 397

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  296 bits (759), Expect = 1e-95
 Identities = 99/421 (23%), Positives = 171/421 (40%), Gaps = 44/421 (10%)

Query: 16  DSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
              A    +     +Y Q+ + A R + +L +  +                   G R+ +
Sbjct: 31  RLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAK-----------------GDRVAL 73

Query: 74  VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
           +   S EF     G    G +AVP+       E+  ++ DS   +V+       V+  + 
Sbjct: 74  LMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIR 133

Query: 134 SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK 193
           +++    ++   +   S    +   +  E      G+D   I+YTSGTTG PKGVVHTH+
Sbjct: 134 AQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHE 193

Query: 194 SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQ 253
           S+ +         +    D+ L  LP+ HV  L   ++     G T+  MP+F    +W 
Sbjct: 194 SVHSAASSWASTIDVRYRDRLLLPLPMFHVAAL-TTVIFSAMRGVTLISMPQFDATKVWS 252

Query: 254 RWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313
              E          E +     VP +   + Q  E  + +            R  + G +
Sbjct: 253 LIVE----------ERVCIGGAVPAILNFMRQVPEFAELDAPD--------FRYFITGGA 294

Query: 314 ALPLPVMQQWETITGHRLLERYGMTEF--VMAISNPLRGARKAGTVGNPLPGVQVKIAED 371
            +P  +++ +       +++ Y +TE      +       RKAG+ G       V +   
Sbjct: 295 PMPEALIKIYAA-KNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVR-G 352

Query: 372 ESGSD-AAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
           + G     G GE+ +KS  L KEYW  P+ T+D+F  +G+F+TGD G+ D++GY  I  R
Sbjct: 353 DDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGYLYIKDR 411

Query: 431 K 431
            
Sbjct: 412 L 412

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  291 bits (746), Expect = 1e-93
 Identities = 97/429 (22%), Positives = 168/429 (39%), Gaps = 51/429 (11%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
              A   D  S +Y +L   A R +S L +  +                     RI +V 
Sbjct: 38  GKTAYIDDTGSTTYGELEERARRFASALRTLGVH-----------------PEERILLVM 80

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             +       LG  ++G + V        ++ ++++  S    V+++    + +      
Sbjct: 81  LDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALES 140

Query: 136 SGAKFSLI--------PPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKG 187
           +      +         P      E  +   + A K      +D A  +Y+SG+TGKPKG
Sbjct: 141 AEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKG 200

Query: 188 VVHTHKSIDAQVQMLTEAW-EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP-K 245
            VHTH ++    ++  +        D       L   +GL N L  PL  GAT   M  +
Sbjct: 201 TVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAER 260

Query: 246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305
            +   I+ R  E             T F GVPT+Y  ++           A        +
Sbjct: 261 PTADAIFARLVE----------HRPTVFYGVPTLYANMLVSPNLPARADVA--------I 302

Query: 306 RLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVM-AISNPLRGARKAGTVGNPLPGV 364
           R+      ALP  + +++    G  +L+  G TE +   +SN   GA + GT G P+PG 
Sbjct: 303 RICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRA-GAVEYGTTGRPVPGY 361

Query: 365 QVKIAEDESGSD-AAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDED 422
           ++++  DE+G     G VG++ +K PS    YW   + ++ +F    + ++GD   +  +
Sbjct: 362 EIELR-DEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPN 419

Query: 423 GYYIILGRK 431
           G Y+  GR 
Sbjct: 420 GCYVYAGRS 428

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  289 bits (743), Expect = 2e-93
 Identities = 88/419 (21%), Positives = 148/419 (35%), Gaps = 47/419 (11%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D  A   D    ++    + A R++S L  + + T                 G R+ I++
Sbjct: 21  DRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHT-----------------GDRVAILS 63

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           +   E +  +      G I +P+       E+  V+ D   S+V++  DYR+++  V   
Sbjct: 64  QNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPS 123

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR--GEDPALIVYTSGTTGKPKGVVHTHK 193
            G                   D +             D  +I++T+   G+P+G + +  
Sbjct: 124 LGGVKKAYAIGDGSGPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQG 183

Query: 194 SIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQ 253
           ++      L +AW  T AD  L  LPL HV GL   +L    AG       KF      +
Sbjct: 184 NLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGL-GLMLTLQQAGGASVIAAKFDPAQAAR 242

Query: 254 RWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313
                           +T       M   +          L  A+ +    LR +    +
Sbjct: 243 DIEA----------HKVTVMAEFAPMLGNI----------LDQAAPAQLASLRAVTGLDT 282

Query: 314 ALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDES 373
              +   +   T         +G +E     +       +  + G PL    V +  D  
Sbjct: 283 PETIERFE--ATCPNATFWATFGQSETSGLSTF-APYRDRPKSAGRPLFWRTVAVV-DAE 338

Query: 374 GSD-AAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
                 G VGEI ++ P++FK YW     T+ +F  +G+  TGD G+ D DGY    GR
Sbjct: 339 DRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGR 396

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  281 bits (722), Expect = 4e-89
 Identities = 84/430 (19%), Positives = 156/430 (36%), Gaps = 46/430 (10%)

Query: 14  ARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
           A DS+A+   ++  SY +L  +A  ++  L    +K                  G    +
Sbjct: 38  ASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKP-----------------GETALV 80

Query: 74  VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE-----DYREV 128
                 E           G   V    S+  SEL       + +++++          + 
Sbjct: 81  QLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDF 140

Query: 129 LQNVASKSGA--KFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
           L    ++  +     L+      + +  +   ++         ++ A    + GTTG PK
Sbjct: 141 LNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPK 200

Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA-LLAPLYAGATVEFMPK 245
            +  TH      V+   E  ++T   ++L  +P  H + + +   L    AG TV     
Sbjct: 201 LIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAAD 260

Query: 246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305
            S    +    +            +     VP   +  +Q     ++  Q AS      L
Sbjct: 261 PSATLCFPLIEK----------HQVNVTALVPPAVSLWLQALIEGESRAQLAS------L 304

Query: 306 RLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-FVMAISNPLRGARKAGTVGNPL-PG 363
           +L+  G + L   +  +     G +L + +GM E  V          +   T G P+ P 
Sbjct: 305 KLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPD 364

Query: 364 VQVKIAEDESGSD-AAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDE 421
            +V +A D  G+    G VG +  + P  F+ Y+K P+    +F A+GF+ +GD    D 
Sbjct: 365 DEVWVA-DAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDP 423

Query: 422 DGYYIILGRK 431
           +GY  + GR+
Sbjct: 424 EGYITVQGRE 433

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  279 bits (716), Expect = 7e-89
 Identities = 91/434 (20%), Positives = 171/434 (39%), Gaps = 55/434 (12%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           +        +S ++ ++     +++S +    ++                  G  +G+  
Sbjct: 42  EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRK-----------------GEHVGVCI 84

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             S ++V  +   W      VP+   Y   EL H+++DS+ + ++      E  + V  K
Sbjct: 85  PNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK 144

Query: 136 SGAKFSLIPPVPNVS-SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
           +G +   +      S SE         E +     ED ALI YT GTTG PKGV+ TH +
Sbjct: 145 TGVERVFVVGGEVNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFN 204

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI--- 251
           + A    L  A   +  D  + C+P+ H       +   +  G     M  F+   +   
Sbjct: 205 LAANALQLAVATGLSHMDTIVGCMPMFHSAEF-GLVNLMVTVGNEYVVMGMFNQEMLAEN 263

Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
            ++++              T    VP     L+   E+ +     +       L++   G
Sbjct: 264 IEKYK-------------GTFSWAVPPALNVLVNTLESSNKTYDWSY------LKVFATG 304

Query: 312 SSALPLPVMQQWETITGHR-------LLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPG 363
           +  +   ++++   +   +         + +GMTE    ++ NP     K+ T G P+  
Sbjct: 305 AWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSD 364

Query: 364 VQVKIAEDESGSD-AAG-VGEICVKSPSLFKEYWKLPKVTKDSFT----ADGFFKTGDTG 417
           +++K+   E G +   G  GEI ++ P++FK YWK  K  ++ +        FF+TGD G
Sbjct: 365 IELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVG 424

Query: 418 KQDEDGYYIILGRK 431
             DE+G+     R 
Sbjct: 425 FIDEEGFLHFQDRV 438

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  268 bits (688), Expect = 3e-85
 Identities = 89/426 (20%), Positives = 159/426 (37%), Gaps = 51/426 (11%)

Query: 16  DSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGI 73
           D  A+   A     ++ +L +    +++ L ++ L+                    R+ +
Sbjct: 17  DHCALAVPARGLRLTHAELRARVEAVAARLHADGLRP-----------------QQRVAV 59

Query: 74  VAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA 133
           VA  S + V  +L     G +   L      +EL  ++   +++  +     +       
Sbjct: 60  VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ 119

Query: 134 SKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHK 193
           S SGA+   +  +     +   +      +   +    PA I YTSGTTG PK  +   +
Sbjct: 120 SGSGARIIFLGDLV---RDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQR 176

Query: 194 SIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGI 251
           + +++V  ++      +   +  L  +PL+HV G F  L+A L    T   + +F     
Sbjct: 177 AAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDA 236

Query: 252 WQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG 311
            Q  ++          E +T+    PT    L        + L+  S      LR +   
Sbjct: 237 LQLVQQ----------EQVTSLFATPTHLDALAAAAAHAGSSLKLDS------LRHVTFA 280

Query: 312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAE 370
            + +P  V++          +  YG TE + ++         K GT   P    +V+I  
Sbjct: 281 GATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQ----PKTGTEMAPGFFSEVRIVR 336

Query: 371 DESGSD---AAG-VGEICVK-SPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYY 425
              G D   A G  GE+ V  S S F  Y   P+ T +    DG+++T D      +G  
Sbjct: 337 IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTV 395

Query: 426 IILGRK 431
            ILGR 
Sbjct: 396 RILGRV 401

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  261 bits (669), Expect = 5e-82
 Identities = 95/448 (21%), Positives = 167/448 (37%), Gaps = 61/448 (13%)

Query: 3   VFKAAYKKGSMARDSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           V +              +   A+   Y+Y  +  +A R++S L    ++           
Sbjct: 28  VLENLSNHS----SKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQ---------- 73

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                  G  I +    S EFV   LG    G I          +EL      S   +++
Sbjct: 74  -------GDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLI 126

Query: 121 STEDYREVLQNVASKSGAK-FSLIPPVPNVSSETTVFDQSQAEKMDGQRG-EDPALIVYT 178
           +   Y E +++ A +S  K   +          + +    + E        +D   + Y+
Sbjct: 127 TQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALPYS 186

Query: 179 SGTTGKPKGVVHTHKSIDAQVQMLTEAW----EYTSADQFLHCLPLHHVHGLFNALLAPL 234
           SGTTG PKGV+ THK +   V    +       + S D  L  LP+ H++ L + +L  L
Sbjct: 187 SGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGL 246

Query: 235 YAGATVEFMPKFSVRGIW---QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD 291
             GA +  MPKF +  +    ++++             ++    VP +   + +  +   
Sbjct: 247 RVGAPILIMPKFEIGSLLGLIEKYK-------------VSIAPVVPPVMMSIAKSPDLDK 293

Query: 292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWE-TITGHRLLERYGMTE-----FVMAIS 345
            +L +        LR++  G + L   +           RL + YGMTE      +    
Sbjct: 294 HDLSS--------LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAF 345

Query: 346 NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKVTKD 403
                  K G  G  +   ++KI + E+G+       GEIC++   + K Y   P+ T  
Sbjct: 346 AKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSR 405

Query: 404 SFTADGFFKTGDTGKQDEDGYYIILGRK 431
           +   +G+  TGD G  D+D    I+ R 
Sbjct: 406 TIDKEGWLHTGDIGYIDDDDELFIVDRL 433

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  260 bits (667), Expect = 1e-81
 Identities = 97/454 (21%), Positives = 169/454 (37%), Gaps = 63/454 (13%)

Query: 2   EVFKAAYKKGSMARDSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNEN 59
           E    A K+ ++   ++A      + + +Y +    ++R++  +    L T         
Sbjct: 24  EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNT--------- 74

Query: 60  SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
                     RI + ++ S +F   VLG  F G    P    Y E ELL+ M+ S  ++V
Sbjct: 75  --------NHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 126

Query: 120 LSTEDYREVLQNVASKSGAKFSLI--------PPVPNV-----SSETTVFDQSQAEKMDG 166
             ++   + + NV  K      +I            ++     S     F++        
Sbjct: 127 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESF 186

Query: 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHV 223
            R +  ALI+ +SG+TG PKGV   H++   +     +     +       L  +P HH 
Sbjct: 187 DRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHG 246

Query: 224 HGLFNALLAPLYAGATVEFMPKFSVRGIW---QRWRESYPVNGNRAGEAITAFTGVPTMY 280
            G+    L  L  G  V  M +F         Q ++             I +   VPT++
Sbjct: 247 FGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYK-------------IQSALLVPTLF 292

Query: 281 TRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTE 339
           +   +       +L          L  +  G + L   V +          + + YG+TE
Sbjct: 293 SFFAKSTLIDKYDLSN--------LHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 344

Query: 340 FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKL 397
              AI     G  K G VG  +P  + K+ + ++G        GE+CV+ P +   Y   
Sbjct: 345 TTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNN 404

Query: 398 PKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
           P+ T      DG+  +GD    DED ++ I+ R 
Sbjct: 405 PEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRL 438

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  257 bits (658), Expect = 2e-80
 Identities = 94/430 (21%), Positives = 160/430 (37%), Gaps = 63/430 (14%)

Query: 25  KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAG 84
             YSY +    +  +   L +  L                     RI + ++   EF   
Sbjct: 51  VDYSYAEYLEKSCCLGKALQNYGLVV-----------------DGRIALCSENCEEFFIP 93

Query: 85  VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLI- 143
           V+   F G    P    Y   EL+H +  S  ++V S++   + +  V        +++ 
Sbjct: 94  VIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVI 153

Query: 144 -------PPVPNVSS-----ETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
                       + +         F  S  + ++  R E  ALI+ +SG+TG PKGV  T
Sbjct: 154 LDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLT 213

Query: 192 HKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV 248
           H++I  +     +     + +     L  +P HH  G+    L  L  G  V  + KF  
Sbjct: 214 HENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDE 272

Query: 249 ----RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ 304
               + + Q ++              T+   VPT++  L +       +L          
Sbjct: 273 ETFLKTL-QDYK-------------CTSVILVPTLFAILNKSELLNKYDLSN-------- 310

Query: 305 LRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPLRGARKAGTVGNPLPG 363
           L  +  G + L   V +          + + YG+TE   AI     G  K G  G  +P 
Sbjct: 311 LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPL 370

Query: 364 VQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDE 421
            + K+ + ++         GE+CVK P L K Y   P+ TK+    +G+  TGD G  DE
Sbjct: 371 FKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE 430

Query: 422 DGYYIILGRK 431
           + ++ I+ R 
Sbjct: 431 EKHFFIVDRL 440

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  257 bits (658), Expect = 2e-80
 Identities = 72/430 (16%), Positives = 146/430 (33%), Gaps = 50/430 (11%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
            S+AI   ++  SY +L   +  +++ L    L                   G    +  
Sbjct: 45  HSLAIICGERQLSYIELDRLSTNLATRLAEKGLGK-----------------GDTALVQL 87

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE-----DYREVLQ 130
               EF         +G + +    S+ + EL   +      +++ +         + + 
Sbjct: 88  PNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFID 147

Query: 131 NVASKSGAKFSLI----PPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPK 186
           ++   + +   ++            +                 ++ A    + G+TG PK
Sbjct: 148 SLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPK 207

Query: 187 GVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL-FNALLAPLYAGATVEFMPK 245
            +  TH   D  V+   E     S  + L  LP  H   L     L  L+AG  V   P 
Sbjct: 208 LIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPN 267

Query: 246 FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305
                 +   +             +   + VP+     ++       ++Q+        L
Sbjct: 268 PEPLNCFSIIQR----------HQVNMASLVPSAVIMWLEKAAQYKDQIQS--------L 309

Query: 306 RLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-FVMAISNPLRGARKAGTVGNPLPGV 364
           +L+  G ++ P  + +Q   +   +L + +GM E  V          +   T G P+   
Sbjct: 310 KLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSD 369

Query: 365 -QVKIAEDESGSD-AAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDE 421
            ++KI  DE   +   G +G +  + P  F  Y++ P+     F  D ++ +GD  ++  
Sbjct: 370 DEIKIV-DEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP 428

Query: 422 DGYYIILGRK 431
           DG   ++GR 
Sbjct: 429 DGNLRVVGRI 438

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  256 bits (657), Expect = 3e-80
 Identities = 86/433 (19%), Positives = 159/433 (36%), Gaps = 60/433 (13%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D +AI      +SY +L + A R+++      ++                    R+ +  
Sbjct: 40  DRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQ-----------------KDRVVVQL 82

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE-----DYREVLQ 130
               EF   +   +  G + V    S+  SE+ +    ++ +  +  +     DYR + +
Sbjct: 83  PNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLAR 142

Query: 131 NVASKSGAKFSLIPPVPNV-----SSETTVFDQSQAEKMDGQR--GEDPALIVYTSGTTG 183
            V SK       +P + N+     + E    +    E +        D A +  + G+TG
Sbjct: 143 QVQSK-------LPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTG 195

Query: 184 KPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGL-FNALLAPLYAGATVEF 242
             K +  TH      ++   E      +  +L  LP+ H + L    +L  LYAG  V  
Sbjct: 196 LSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255

Query: 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302
            P  S    +               E +T    VP +    +    +   +L +      
Sbjct: 256 SPSPSPDDAFPLIER----------EKVTITALVPPLAMVWMDAASSRRDDLSS------ 299

Query: 303 KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTE-FVMAISNPLRGARKAGTVGNPL 361
             L+++  G +       ++ + + G  L + +GM E  V              T G P+
Sbjct: 300 --LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPM 357

Query: 362 -PGVQVKIAEDESGSD-AAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGK 418
            P  + ++  D+   D   G  G +  + P   + Y+K  +    SFT DGF++TGD  +
Sbjct: 358 SPYDESRVW-DDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR 416

Query: 419 QDEDGYYIILGRK 431
              DGY ++ GR 
Sbjct: 417 LTRDGYIVVEGRA 429

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  243 bits (622), Expect = 4e-72
 Identities = 89/457 (19%), Positives = 165/457 (36%), Gaps = 71/457 (15%)

Query: 3   VFKAAYKKGSMARDSVAI--RADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           +F+   +          +        Y+Y  +   + +I++      +            
Sbjct: 67  IFQNISEFA----TKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQ---------- 112

Query: 61  AVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVL 120
                     + ++     EFV   L   F G  A      +  +E+      S+  +++
Sbjct: 113 -------NDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLII 165

Query: 121 STEDYREVLQNVASKSGAKFSLIPPVPNVSSETTV--FDQSQAEKMDGQRG--------E 170
           +   Y + ++ + +  G     I    +V        F +      +            +
Sbjct: 166 TEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPD 225

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW----EYTSADQFLHCLPLHHVHGL 226
           D   + Y+SGTTG PKGV+ THK +   V    +       + S D  L  LP+ H++ L
Sbjct: 226 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYAL 285

Query: 227 FNALLAPLYAGATVEFMPKFSV----RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTR 282
            + +L  L  GA +  MPKF +      I QR +             +T    VP +   
Sbjct: 286 NSIMLCGLRVGAAILIMPKFEINLLLELI-QRCK-------------VTVAPMVPPIVLA 331

Query: 283 LIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ-WETITGHRLLERYGMTE-- 339
           + +  E    +L +        +R++  G++ L   +           +L + YGMTE  
Sbjct: 332 IAKSSETEKYDLSS--------IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAG 383

Query: 340 ---FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEY 394
               +           K+G  G  +   ++KI + ++G   +    GEIC++   + K Y
Sbjct: 384 PVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGY 443

Query: 395 WKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
              P  T ++   DG+  TGD G  D+D    I+ R 
Sbjct: 444 LNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRL 480

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  207 bits (528), Expect = 4e-61
 Identities = 89/451 (19%), Positives = 173/451 (38%), Gaps = 70/451 (15%)

Query: 6   AAYKKGSMARDSVAIR-----ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           A  +K      S A+        +  +++ +L+ ++ + +                    
Sbjct: 48  ADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAA-------------------- 87

Query: 61  AVLAGGCGA----RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDI 116
            VL+G CG     R+ +V     E+   +LG   +G I +P  +    +++L+ +  S  
Sbjct: 88  NVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKA 147

Query: 117 SMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ--------- 167
             +++ ++  + +  VAS+  +    +     VS ++     +  + ++           
Sbjct: 148 KAIVAGDEVIQEVDTVASECPS----LRIKLLVSEKSCDGWLNFKKLLNEASTTHHCVET 203

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
             ++ + I +TSGT+G PK   H++ S+  + +M        ++D          +  + 
Sbjct: 204 GSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNIL 263

Query: 228 NALLAPLYAGATVEF--MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285
            +L+ P   GA      +PKF    I +    SYP+          +  G P +Y  L+Q
Sbjct: 264 CSLMEPWALGACTFVHLLPKFDPLVILKTL-SSYPI---------KSMMGAPIVYRMLLQ 313

Query: 286 GYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAIS 345
                    Q  S+     L+  +    +L    ++ W   TG  + E YG TE  +   
Sbjct: 314 ---------QDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCM 364

Query: 346 NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKS-----PSLFKEYWKLPK 399
                  K G +G       V+I +D+      G  G+I ++        +F  Y   P 
Sbjct: 365 VSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPD 424

Query: 400 VTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
            T  +     F+  GD G +DEDGY+  +GR
Sbjct: 425 KTAANI-RGDFWLLGDRGIKDEDGYFQFMGR 454

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  182 bits (463), Expect = 1e-51
 Identities = 92/467 (19%), Positives = 161/467 (34%), Gaps = 112/467 (23%)

Query: 26  SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV 85
           + +Y+QL   A  I++ L +   K                  G R+ ++  P    +   
Sbjct: 40  TMTYEQLDQHAKAIAATLQAEGAKP-----------------GDRVLLLFAPGLPLIQAF 82

Query: 86  LGTWFSGCIAVPLALSYPESE---LLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL 142
           LG  ++GCIAVP+     E        ++ +S   +VL   D+ +      +        
Sbjct: 83  LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIK---KFTADELNTNPK 139

Query: 143 IPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML 202
              +P ++ E+   ++S + +    +  D A + YTSG+T  PKGV+ +H ++   +  +
Sbjct: 140 FLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKI 199

Query: 203 TEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP--KFSVR-GIWQRWRESY 259
             ++           LP HH  GL   +L P+Y G     M    F      W +    Y
Sbjct: 200 FTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKY 259

Query: 260 PVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL-----RLMMCGSSA 314
                         +G P           A D  ++       + L          G+  
Sbjct: 260 KAT----------ISGSP---------NFAYDYCVKRIREEKKEGLDLSSWVTAFNGAE- 299

Query: 315 LPLPVMQQWETITGHRLLER--------------YGMTEFVMAISNPLRGAR-------- 352
              PV  + ET+      +               YG+ E  + ++    G+         
Sbjct: 300 ---PV--REETM--EHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAK 352

Query: 353 ---KAGTV----------------GNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLF 391
              +   V                GNP+    VKI + ++        VGEI V+S S+ 
Sbjct: 353 EQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVA 410

Query: 392 KEYWKLPKVTKDSFTA--------DGFFKTGDTGKQDEDGYYIILGR 430
           K YW  P+ T+ +F            + +TGD G    +    + GR
Sbjct: 411 KGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGR 456

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  173 bits (440), Expect = 3e-49
 Identities = 86/474 (18%), Positives = 147/474 (31%), Gaps = 120/474 (25%)

Query: 26  SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGV 85
           + ++ QL    L ++  L                     G  G R+ I A    E+V   
Sbjct: 58  TLTWSQLYRRTLNVAQELSR------------------CGSTGDRVVISAPQGLEYVVAF 99

Query: 86  LGTWFSGCIAVPLALSYPESE---LLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL 142
           LG   +G IAVPL++            V+ DS    +L+T    + +    ++   +   
Sbjct: 100 LGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGE--- 156

Query: 143 IPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML 202
             P   +  +    D               A + YTSG+T  P GVV +H+++    + L
Sbjct: 157 -SPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQL 215

Query: 203 TEAWEYTS------ADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR---GIWQ 253
              +   +          +  LP +H  GL   + AP+  G         S       W 
Sbjct: 216 MSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWM 275

Query: 254 RWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL-----RLM 308
               S             AF+  P         +E      +  +              +
Sbjct: 276 HLMASDFH----------AFSAAPNF------AFELA---ARRTTDDDMAGRDLGNILTI 316

Query: 309 MCGSSALPLPVMQQWETITGHRLLER--------------YGMTEFVMAISNPLRG---- 350
           + GS      V  Q  TI   R  +R              Y + E  + ++    G    
Sbjct: 317 LSGSE----RV--QAATI--KRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPE 368

Query: 351 ---------------------ARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKS 387
                                A    +   P   + V+I + ++  +     VGEI V  
Sbjct: 369 TVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPI-VRIVDSDTCIECPDGTVGEIWVHG 427

Query: 388 PSLFKEYWKLPKVTKDSFTA-----------DGFFKTGDTGKQDEDGYYIILGR 430
            ++   YW+ P  ++ +F               + +TGD+G    DG   I+GR
Sbjct: 428 DNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  173 bits (441), Expect = 1e-48
 Identities = 90/458 (19%), Positives = 168/458 (36%), Gaps = 96/458 (20%)

Query: 15  RDSVAIR-----ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA 69
            + +A+       ++K +++  L   + + ++    + +                   G 
Sbjct: 70  PEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGK-----------------GD 112

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR--- 126
            + +  K  ++F   +LG    G IAVP        ++++ +  + + M++   +     
Sbjct: 113 YVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPE 172

Query: 127 ---EVLQNVASKSGAKFSLIPPVPN---------VSSETTVFDQSQAEKMDGQRGEDPAL 174
              E           K  +   V             S       +          ED  L
Sbjct: 173 QVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKN---EDICL 229

Query: 175 IVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVH---------- 224
           + ++SGT G PK V H +      +  +  A       ++   +    +H          
Sbjct: 230 VYFSSGTAGFPKMVEHDNT---YPLGHILTA-------KYWQNVEDDGLHYTVADSGWGK 279

Query: 225 GLFNALLAPLYAGATVEFM---PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYT 281
            ++  L     AG  V F+    +F  + + ++    Y V         T F   PT+Y 
Sbjct: 280 CVWGKLYGQWIAGCAV-FVYDYDRFEAKNMLEKA-SKYGV---------TTFCAPPTIYR 328

Query: 282 RLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL-P-VMQQWETITGHRLLERYGMTE 339
            LI+         +  S      L+      +  PL P V  ++   TG +L+E +G TE
Sbjct: 329 FLIK---------EDLSHYNFSTLKY--AVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTE 377

Query: 340 FVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGS--DAAGVGEICVKSP-----SLFK 392
            V+ I+       K G++G P PG ++++  D  G   +    GEI + +       LF 
Sbjct: 378 TVVTIATFPWMEPKPGSIGKPTPGYKIELM-DRDGRLCEVGEEGEIVINTMEGKPVGLFV 436

Query: 393 EYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
            Y K P+ T++++  DG++ TGD    DEDGY   +GR
Sbjct: 437 HYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGR 473

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  157 bits (400), Expect = 4e-43
 Identities = 74/277 (26%), Positives = 122/277 (44%), Gaps = 37/277 (13%)

Query: 171 DPALIVYTSGTTGKPKGVVHTHKSI--DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN 228
               + YT+GTTG PKGVV++H+++   +    L +    +  D  L  +P+ HV+    
Sbjct: 177 AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL 236

Query: 229 ALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE 288
              A L     V   P+     + + +            E +T   GVPT++  L    E
Sbjct: 237 PYAATLVGAKQVLPGPRLDPASLVELFDG----------EGVTFTAGVPTVWLALADYLE 286

Query: 289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF--VMAISN 346
           +    L        K LR ++ G SA P  ++ ++E + G  + + YG+TE   V+  + 
Sbjct: 287 STGHRL--------KTLRRLVVGGSAAPRSLIARFERM-GVEVRQGYGLTETSPVVVQNF 337

Query: 347 PLRG---------ARKAGTVGNPLPGVQVKIAEDESGS----DAAGVGEICVKSPSLFKE 393
                               G P+P V++++A DE G     D   +GE+ +K P +   
Sbjct: 338 VKSHLESLSEEEKLTLKAKTGLPIPLVRLRVA-DEEGRPVPKDGKALGEVQLKGPWITGG 396

Query: 394 YWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
           Y+   + T+ + T DGFF+TGD    DE+GY  I  R
Sbjct: 397 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDR 433

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score =  132 bits (335), Expect = 2e-33
 Identities = 92/444 (20%), Positives = 163/444 (36%), Gaps = 92/444 (20%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIV 74
           D+ A+    ++ SY +L   A RI+  L                     G G G+ + + 
Sbjct: 479 DAPALTYSGQTLSYRELDEEANRIARRLQK------------------HGAGKGSVVALY 520

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
            K S E V G+LG   +G   +P+    PE  + +++ DS  + +L+ ++ +E    +  
Sbjct: 521 TKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPY 580

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
                      +     + T F++  ++        DPA I+YTSGTTGKPKG + TH +
Sbjct: 581 T-------GTTL--FIDDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHAN 631

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPK---FS 247
           I   V+   +   ++  D FL           F+A      A +   A +    +     
Sbjct: 632 IQGLVKH-VDYMAFSDQDTFLSVSNYA-----FDAFTFDFYASMLNAARLIIADEHTLLD 685

Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
              +     +          E +        ++  L             A     K LR 
Sbjct: 686 TERLTDLILQ----------ENVNVMFATTALFNLLTD-----------AGEDWMKGLRC 724

Query: 308 MMCGSSALPLPVMQQW-ETITGHRLLERYGMTEF-VMAISNPLRGARKAGTV---GNPLP 362
           ++ G     +P +++    +   +L+  YG TE  V A ++ +     + +    G P+ 
Sbjct: 725 ILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPIS 784

Query: 363 GVQVKIAEDESGSDAAG-------VGEICVKSPSLFKEYWKLPKVTKDSFTADGF----- 410
              V I       +          VGE+C+    + K Y     +TK+ F  + F     
Sbjct: 785 NASVYIL------NEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGET 838

Query: 411 -FKTGDTGKQDEDG---YYIILGR 430
            ++TGD  +   DG   Y    GR
Sbjct: 839 LYRTGDLARWLPDGTIEY---AGR 859

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score =  125 bits (316), Expect = 1e-31
 Identities = 81/438 (18%), Positives = 154/438 (35%), Gaps = 78/438 (17%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D        +  +Y QL   +  I++ + S  L                    + + +  
Sbjct: 19  DFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLA-----------------KSPVLVFG 61

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
             +++ +A  +    SG   +P+ +      +L ++  +  S++++ E++   ++ +   
Sbjct: 62  AQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI--- 118

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                     V     E+    +   E+    +G+D   I++TSGTTG+PKGV  +H ++
Sbjct: 119 --------SLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNL 170

Query: 196 DAQVQMLTEAWEY--TSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPKFSVR 249
            +    + E   +      Q L   P       F+         L  G T+  +PK  V 
Sbjct: 171 LSFTNWMIEDAAFDVPKQPQMLAQPPYS-----FDLSVMYWAPTLALGGTLFALPKELVA 225

Query: 250 ---GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLR 306
               ++    +            +  +T  P+     +   +    ++ A        L 
Sbjct: 226 DFKQLFTTIAQ----------LPVGIWTSTPSFADMAMLSDDFCQAKMPA--------LT 267

Query: 307 LMMCGSSALPLPVMQQW-ETITGHRLLERYGMTE---FVMAISNPLRGARKAGTV--GNP 360
                   L +   ++  E     +++  YG TE    + AI            +  G P
Sbjct: 268 HFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYP 327

Query: 361 LPGVQVKIAEDESGSDA-AGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGF---FKTGD 415
            P     I  DE G +  +G  GEI V  P++ K Y   P+ T ++F        + TGD
Sbjct: 328 KPDSPTYII-DEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGD 386

Query: 416 TGKQDEDG---YYIILGR 430
            G   ED    Y    GR
Sbjct: 387 IGSLTEDNILLY---GGR 401

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score =  119 bits (300), Expect = 2e-29
 Identities = 88/448 (19%), Positives = 159/448 (35%), Gaps = 106/448 (23%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIV 74
           ++VAI  + +  +Y +L   A +++ +                      G G    +GI+
Sbjct: 54  NNVAIVCENEQLTYHELNVKANQLARIFIEK------------------GIGKDTLVGIM 95

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
            + S +   G+L    +G   VP+ + YP+  + +++ DS   M+L+ +    ++     
Sbjct: 96  MEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI----- 150

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ------RGEDPALIVYTSGTTGKPKGV 188
                          + +  +F++   +  +G       +  D A ++YTSGTTG PKG 
Sbjct: 151 ----------HNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGT 200

Query: 189 VHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMP 244
           +  HK I         +   T  D+      +      F+A    +   L  GA++  + 
Sbjct: 201 MLEHKGISNLKVFFENSLNVTEKDRIGQFASIS-----FDASVWEMFMALLTGASLYIIL 255

Query: 245 K---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301
           K          Q   +          + IT  T  PT               +       
Sbjct: 256 KDTINDFVKFEQYINQ----------KEITVITLPPTY--------------VVHLDPER 291

Query: 302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF-VMAISNPLRGARKAGTV--G 358
              ++ ++   SA    ++ +W        +  YG TE  + A +          +V  G
Sbjct: 292 ILSIQTLITAGSATSPSLVNKW--KEKVTYINAYGPTETTICATTWVATKETIGHSVPIG 349

Query: 359 NPLPGVQVKIAEDESGSDAAG-------VGEICVKSPSLFKEYWKLPKVTKDSFTADGF- 410
            P+   Q+ I       D           GE+C+    L + YWK P++T   F  + F 
Sbjct: 350 APIQNTQIYIV------DENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFV 403

Query: 411 -----FKTGDTGKQDEDG---YYIILGR 430
                +KTGD  +   DG   Y   LGR
Sbjct: 404 PGEKLYKTGDQARWLSDGNIEY---LGR 428

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score =  118 bits (299), Expect = 5e-29
 Identities = 77/440 (17%), Positives = 129/440 (29%), Gaps = 89/440 (20%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIV 74
              AIR    S  Y QL  SA ++S  L                  +      G  +G+ 
Sbjct: 42  HREAIRDRFGSVDYRQLLDSAEQLSDYL------------------LEHYPQPGVCLGVY 83

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
            + S E +  +L    SG   + + L  P +    +    D  ++L           +  
Sbjct: 84  GEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGLP- 142

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
                               +     +        +  A I ++SGTTG+PK +  TH  
Sbjct: 143 --------------CVPVRHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAG 188

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPK--FSV 248
           I            +    +FL   PL      F+A    +   L  G             
Sbjct: 189 ITRLCLG-QSFLAFAPQMRFLVNSPLS-----FDAATLEIWGALLNGGCCVLNDLGPLDP 242

Query: 249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM 308
             + Q   E              +     +++  L+                    LR +
Sbjct: 243 GVLRQLIGE----------RGADSAWLTASLFNTLVD-----------LDPDCLGGLRQL 281

Query: 309 MCGSSALPLPVMQQW-ETITGHRLLERYGMTEF-VMAISNPLRGARKAGTV---GNPLPG 363
           + G   L +P +++         L+  YG TE       + +            G  + G
Sbjct: 282 LTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAG 341

Query: 364 VQVKIAEDESGSD--AAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGF-------FKT 413
             V +  DE G +       GEI      L + Y      T+ SF    +       ++T
Sbjct: 342 TAVLLL-DEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRT 400

Query: 414 GDTGKQDEDG---YYIILGR 430
           GD  + DE G   +   +GR
Sbjct: 401 GDRARYDEQGRLRF---IGR 417

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score =  117 bits (295), Expect = 9e-29
 Identities = 65/383 (16%), Positives = 119/383 (31%), Gaps = 60/383 (15%)

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
            I +    S    A ++G   SG   VP+    P      ++ DS  +M    ++  + +
Sbjct: 81  AIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV 140

Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVV 189
           +           L     +     +  D S             A ++YTSG+TG PKGV 
Sbjct: 141 EL----PPETKVLDTKNQSFIENLSTQDTSDILN--NYPENLDAYLLYTSGSTGTPKGVR 194

Query: 190 HTHKSI--------DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAG 237
            +  ++             +  ++ E     +FL           F+     +      G
Sbjct: 195 VSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRA-----FDVHIGEMFLAWRFG 249

Query: 238 ATVEFMPKFSVR-GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQA 296
                  + S+   + + +RE            +T    VP++  +              
Sbjct: 250 LCAVTGERLSMLDDLPRTFRE----------LGVTHAGIVPSLLDQTGL----------- 288

Query: 297 ASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEF-VMAISNPLRGARKAG 355
                A  L  +  G   +     Q W +     L+  YG TE  +   +  +       
Sbjct: 289 -VPEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTR 347

Query: 356 TVGNPLPGVQVKIAEDESGSDA-AGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGF--- 410
            +G+PL      +    S      G+ GE+ ++   +   Y   P      F        
Sbjct: 348 CIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKG--FCDINGRKM 405

Query: 411 FKTGDTGKQDEDG---YYIILGR 430
           ++TGD  + D D    +   LGR
Sbjct: 406 YRTGDIVRMDADSSILF---LGR 425

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score =  114 bits (288), Expect = 7e-28
 Identities = 71/424 (16%), Positives = 149/424 (35%), Gaps = 81/424 (19%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
            + A R+  +S +Y +L   + R ++ +                   ++G   + I +  
Sbjct: 16  QTDAFRSQGQSLTYQELWEQSDRAAAAIQKR----------------ISGEKKSPILVYG 59

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
                 +   LG+  +G   +P+ LS P   +  ++  S   +++               
Sbjct: 60  HMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQ-- 117

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ-RGEDPALIVYTSGTTGKPKGVVHTHKS 194
                     +  VS+E  + ++  +   D   +  +   I+YTSG+TG PKGV  +  +
Sbjct: 118 ----------IQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAAN 167

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPKFSVR- 249
           + +    +   +  +    FL+  P       F+     L   L +G T+  + K +V  
Sbjct: 168 LQSFTDWICADFPVSGGKIFLNQAPFS-----FDLSVMDLYPCLQSGGTLHCVTKDAVNK 222

Query: 250 --GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
              +++  ++            +  +T  P+     +             S         
Sbjct: 223 PKVLFEELKK----------SGLNVWTSTPSFVQMCLM--------DPGFSQDLLPHADT 264

Query: 308 MMCGSSALPLPVMQQW-ETITGHRLLERYGMTE---FVMAISNPLRGARKAGTV--GNPL 361
            M     LP+ V +   E     ++   YG TE    V ++        ++ ++  G   
Sbjct: 265 FMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAK 324

Query: 362 PGVQVKIAEDESGSDAAG-------VGEICVKSPSLFKEYWKLPKVTKDSFTADGF---F 411
           P + + I       D  G        GEI +  PS+ + Y   P++T+ +F +      +
Sbjct: 325 PDMNIFIM------DEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAY 378

Query: 412 KTGD 415
           +TGD
Sbjct: 379 RTGD 382

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score =  111 bits (279), Expect = 1e-26
 Identities = 75/424 (17%), Positives = 136/424 (32%), Gaps = 80/424 (18%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAG-GCGARIGIV 74
           D  A        +Y QL   +  ++  + S                        + I + 
Sbjct: 16  DQTAFVWRDAKITYKQLKEDSDALAHWISS------------------EYPDDRSPIMVY 57

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
                E +   LG   +G   +P+ LS P   +  +  +S   ++LS          V  
Sbjct: 58  GHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVR- 116

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
                   I    N+         +        +G++   I+YTSG+TG PKGV  T+  
Sbjct: 117 --------IVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNC 168

Query: 195 IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA----LLAPLYAGATVEFMPKFSVR- 249
           + +  +   E +   +   FL+  P       F+     +   L  G T+  + K  +  
Sbjct: 169 LVSFTKWAVEDFNLQTGQVFLNQAPFS-----FDLSVMDIYPSLVTGGTLWAIDKDMIAR 223

Query: 250 --GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
              ++    +            I  +T  P+     +           + S S    ++ 
Sbjct: 224 PKDLFASLEQ----------SDIQVWTSTPSFAEMCLM--------EASFSESMLPNMKT 265

Query: 308 MMCGSSALPLPVMQQW-ETITGHRLLERYGMTE---FVMAISNPLRGARKAGTV--GNPL 361
            +     LP  V ++  E      ++  YG TE    V  I        +  ++  G   
Sbjct: 266 FLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCK 325

Query: 362 PGVQVKIAEDESGSDAAG-------VGEICVKSPSLFKEYWKLPKVTKDSFTADGF---F 411
              ++ I          G        GEI +  PS+   Y   P++T+ +FT       +
Sbjct: 326 SDCRLLIM------KEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAY 379

Query: 412 KTGD 415
           KTGD
Sbjct: 380 KTGD 383

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 99.4 bits (247), Expect = 3e-23
 Identities = 39/249 (15%), Positives = 78/249 (31%), Gaps = 30/249 (12%)

Query: 166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLH- 221
           G   +    +  + GTTG PK VV     I+A +              +   L  +P   
Sbjct: 87  GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGP 146

Query: 222 HVHGLFNALLAPLYAGA--TVEFMPKFSVRGIWQRWRESYPVNGNRAGEA---------I 270
           H+ G  N   A    G   +++  P++  R + +    +     +   +          I
Sbjct: 147 HIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDI 206

Query: 271 TAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW--ETITG 328
                 P +   L++  E +    Q+        L  +  G + L L  ++    E +  
Sbjct: 207 RFLVTTPPVLRELLKRPEVVLQMKQS--------LAQITLGGTELNLDEIKFIASEILPD 258

Query: 329 HRLLERYGMTEFV-MAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSD-AAG-VGEICV 385
                 YG T  + ++ S  +    +     +  P +   + +  +      G  G + V
Sbjct: 259 CEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIV 318

Query: 386 KSPSLFKEY 394
               L    
Sbjct: 319 T--HLSPWA 325

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 1e-11
 Identities = 66/477 (13%), Positives = 136/477 (28%), Gaps = 145/477 (30%)

Query: 1   MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENS 60
           M   K   ++ SM      I    + Y+ +Q+ +    +S L     L+    + +   +
Sbjct: 95  MSPIKTEQRQPSMMTRMY-IEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKN 152

Query: 61  AVLAG--GCG--------AR-IGIVAKPSFEFVAGVLGTWFS-GCIAVPLALSYPESELL 108
            ++ G  G G             +  K  F     +   W +      P  +     +LL
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDF----KIF--WLNLKNCNSPETVLEMLQKLL 206

Query: 109 HVM-------HDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPV-PNVSSETTV--FD- 157
           + +        D   ++ L     +  L+ +      +  L+  V  NV +      F+ 
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNL 264

Query: 158 QSQAEKMDGQRGEDPALIVYT--SGTTGKPKGVVHTHKSIDAQVQMLT--EAWEYTSADQ 213
             +             +++ T     T        TH S+D     LT  E        +
Sbjct: 265 SCK-------------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--K 309

Query: 214 FLHC----LP--LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAG 267
           +L C    LP  +   +    +++A        E +        W  W+    VN ++  
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIA--------ESIRDGLAT--WDNWKH---VNCDKLT 356

Query: 268 EAITAFTGVPTMYTRLIQGYEAMD-TELQAASASAAKQLRLMMCG----SSALPLPVMQQ 322
             I +                 ++  E +                    S+ +P  ++  
Sbjct: 357 TIIESS-------------LNVLEPAEYRK---------MFDRLSVFPPSAHIPTILLSL 394

Query: 323 -WETITGHRLLERYGMTEFVMAISNPLRGA------RKAGTVGNPLPGVQVKIAEDESGS 375
            W  +              VM + N L          K  T+   +P + +++       
Sbjct: 395 IWFDVI----------KSDVMVVVNKLHKYSLVEKQPKESTIS--IPSIYLELKVK---- 438

Query: 376 DAAGVGEICVKSPSLFK---EYWKLPKVTKDSFTADGFFKTGDTGKQDEDGY---YI 426
                        +L +   +++ +PK           F + D      D Y   +I
Sbjct: 439 --------LENEYALHRSIVDHYNIPKT----------FDSDDLIPPYLDQYFYSHI 477

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 56.8 bits (138), Expect = 6e-09
 Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 3/36 (8%)

Query: 157 DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTH 192
            + Q E M+    EDP  I+YTSG+TGKPKGV+HT 
Sbjct: 246 PEHQPEAMNA---EDPLFILYTSGSTGKPKGVLHTT 278

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 347 PLRGA--RKAGTVGNPLPGVQVKIAEDESGSDAAGVGE--ICVKS--PSLFKEYWKLPKV 400
           PL GA   KAG+   P  GVQ  +  D  G    G  E  + +    P   +  +   + 
Sbjct: 425 PLPGAIELKAGSATRPFFGVQPALV-DNEGHPQEGATEGNLVITDSWPGQARTLFGDHER 483

Query: 401 TKDSF--TADGFFKTGDTGKQDEDGYYIILGR 430
            + ++  T    + +GD  ++DEDGYY I GR
Sbjct: 484 FEQTYFSTFKNMYFSGDGARRDEDGYYWITGR 515

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 56.4 bits (137), Expect = 8e-09
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)

Query: 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHT 191
              +D    EDP  ++YTSG+TG PKGV H+
Sbjct: 256 CTPVDS---EDPLFLLYTSGSTGAPKGVQHS 283

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 54.1 bits (131), Expect = 5e-08
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 10/94 (10%)

Query: 347 PLRGAR---KAGTVGNPLPGVQVKIAEDESGSD---AAGVGEICVKS--PSLFKEYWKLP 398
           PL G     K G+   P  G+   + +  +G +   +   G + VK+  PS  +  WK  
Sbjct: 431 PLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNH 490

Query: 399 KVTKDSF--TADGFFKTGDTGKQDEDGYYIILGR 430
               D++     G++ TGD   +D+DGY  ILGR
Sbjct: 491 DRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGR 524

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 34/190 (17%), Positives = 57/190 (30%), Gaps = 53/190 (27%)

Query: 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE---YTSADQFLHCLPLHHVHGL 226
           +  + I  +SGTTGKP  V +T   ID    ++  +         D+          +GL
Sbjct: 90  DRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYG----YGL 145

Query: 227 FNALLAPLYA----GATV------------EFMPKFSVRGIWQRWRESYPVNGNRAGEAI 270
           F   L   Y     G TV            + +  F                        
Sbjct: 146 FTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRP---------------------- 183

Query: 271 TAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGH 329
                 P+    +    E    +   +S      LR+ + G+       M+   E   G 
Sbjct: 184 DIIMVTPSYMLSIADEIERQGLDPVQSS------LRIGIFGAEPWT-NDMRVAIEQRMGI 236

Query: 330 RLLERYGMTE 339
             ++ YG++E
Sbjct: 237 DAVDIYGLSE 246

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 53/182 (29%)

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWE---YTSADQFLHCLPLHHVHGLFNALLAPL 234
           +SGTTG P  +VH+   +D+   ++            D F +       +G+F   L   
Sbjct: 94  SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSG----YGMFTGGLGFQ 149

Query: 235 YA----GATV------------EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278
           Y     G               +F+  F                        TA   +P+
Sbjct: 150 YGAERLGCLTVPAAAGNSKRQIKFISDFKT----------------------TALHAIPS 187

Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGM 337
              RL + ++    + +  +      L+ ++ G+        ++  E +   +    +GM
Sbjct: 188 YAIRLAEVFQEEGIDPRETT------LKTLVIGAEPHT-DEQRRKIERMLNVKAYNSFGM 240

Query: 338 TE 339
           TE
Sbjct: 241 TE 242

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 33/182 (18%), Positives = 54/182 (29%), Gaps = 53/182 (29%)

Query: 178 TSGTTGKPKGVVHTHKSIDAQVQMLTEAWE---YTSADQFLHCLPLHHVHGLFNALLAPL 234
           +SGTTGKP  V +T + ID    +   +         D   +       +GLF   L   
Sbjct: 100 SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFG----YGLFTGGLGIH 155

Query: 235 YA----GATV------------EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPT 278
           Y     G  V            + +  F                              P+
Sbjct: 156 YGAERLGCMVVPMSGGQTEKQVQLIRDFEP----------------------KIILVTPS 193

Query: 279 MYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW-ETITGHRLLERYGM 337
               LI        +   +S      L++ + G+       ++   ET  G   L+ YG+
Sbjct: 194 YMLNLIDEMVRQGMDPAESS------LKIGIFGAEPWT-QALRNEVETRVGIDALDIYGL 246

Query: 338 TE 339
           +E
Sbjct: 247 SE 248

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	435
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.96
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	97.78
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	97.68
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	97.65
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	91.59
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	91.23
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	90.33
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	87.71
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	81.86
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	81.62
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	80.68

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=4.8e-66  Score=515.11  Aligned_cols=400  Identities=23%  Similarity=0.317  Sum_probs=340.0

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeC--CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869            1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~   78 (435)
                      +|+++.|.++++++|+++|+++.  ++++||+||.++++++|++|++.                 |+++||+|+++++|+
T Consensus        22 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~   84 (536)
T 3ni2_A           22 LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKI-----------------GIQQGDVIMLFLPSS   84 (536)
T ss_dssp             CCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSS
T ss_pred             CcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCc
Confidence            57899999999999999999985  68999999999999999999994                 999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCC-Ccccc-c
Q 013869           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS-SETTV-F  156 (435)
Q Consensus        79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~  156 (435)
                      +++++++|||+++|++++|+++.++.+++.++++.++++++|++....+.+..........+..+....... ..... .
T Consensus        85 ~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (536)
T 3ni2_A           85 PEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQ  164 (536)
T ss_dssp             HHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCEETHHHHT
T ss_pred             HHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCccCHHHHhh
Confidence            999999999999999999999999999999999999999999999888777766544333333332211100 00000 0


Q ss_pred             cchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHH----hccCCCCCeeEEeecchhhhHHHHHHHH
Q 013869          157 DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVHGLFNALLA  232 (435)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~l~~~pl~~~~g~~~~~~~  232 (435)
                      ......+.....++++++++|||||||.||+|.++|+++.+.+.....    .+.+.+.+++++.+|++|..++...++.
T Consensus       165 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~  244 (536)
T 3ni2_A          165 ADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLC  244 (536)
T ss_dssp             SCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHH
T ss_pred             ccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHH
Confidence            011112233567899999999999999999999999999888776554    3457889999999999999998777899


Q ss_pred             HHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecC
Q 013869          233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (435)
Q Consensus       233 ~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G  312 (435)
                      ++..|+++++.+.+++..+++.          ++++++|++.++|+++..+++...        ....+++++|.+++||
T Consensus       245 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~lr~i~~gG  306 (536)
T 3ni2_A          245 GLRVGAPILIMPKFEIGSLLGL----------IEKYKVSIAPVVPPVMMSIAKSPD--------LDKHDLSSLRMIKSGG  306 (536)
T ss_dssp             HHHHTCCEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHTCSC--------GGGSCCTTCCEEEEES
T ss_pred             HHhcCCEEEEcCCCCHHHHHHH----------HHHhCCeEEEccHHHHHHHHhCcc--------cccCCCccceEEEECC
Confidence            9999999999999999998888          566899999999999999987643        2344689999999999


Q ss_pred             CCCCHHHHHHHHHHh-CCcccccccCccccchhccC-----CCCCCCCCccceecCCCeEEEec-CCCCCCCCc-cceEE
Q 013869          313 SALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNP-----LRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-VGEIC  384 (435)
Q Consensus       313 ~~l~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~-----~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~~-~Gel~  384 (435)
                      +++++++.+.|++.| ++++++.||+||++.+++..     .......+++|+|+++++++|+| ++++.++.+ .|||+
T Consensus       307 e~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~  386 (536)
T 3ni2_A          307 APLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEIC  386 (536)
T ss_dssp             SCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEE
T ss_pred             CCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEE
Confidence            999999999999999 88999999999998654421     22234678899999999999999 557777766 79999


Q ss_pred             EecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          385 VKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       385 v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++|++++.||+++|+.+.+.|+.+|||+|||+|++|+||++++.||+||+|
T Consensus       387 v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~i  437 (536)
T 3ni2_A          387 IRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELI  437 (536)
T ss_dssp             EESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCE
T ss_pred             EeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceE
Confidence            999999999999999999999889999999999999999999999999986

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=3e-66  Score=512.41  Aligned_cols=395  Identities=34%  Similarity=0.551  Sum_probs=334.9

Q ss_pred             HHHHHHhcccCCCeeEEE---eCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            4 FKAAYKKGSMARDSVAIR---ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         4 ~~~~~~~~~~~p~~~al~---~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      .++|.++++++|+++|+.   ++++++||+||.++++++|++|+++                 |+++||+|+++++|+++
T Consensus         3 ~~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~~~   65 (503)
T 4fuq_A            3 ANLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVAR-----------------GLQVGDRVAAQTEKSVE   65 (503)
T ss_dssp             CCHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSCHH
T ss_pred             hhHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCCHH
Confidence            457888999999999998   4678999999999999999999995                 99999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchh
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (435)
                      +++++|||+++|++++|+++.++.+++.++++.++++++|++++..+.+..........+..+.................
T Consensus        66 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (503)
T 4fuq_A           66 ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASE  145 (503)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCS
T ss_pred             HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCC
Confidence            99999999999999999999999999999999999999999987765554444333322222211110000000000011


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEE
Q 013869          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (435)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~  240 (435)
                      ........++++++++|||||||.||+|.++|+++.+........+++.+++++++.+|++|..+++..++.++..|+++
T Consensus       146 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~  225 (503)
T 4fuq_A          146 AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSM  225 (503)
T ss_dssp             CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEE
T ss_pred             CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEE
Confidence            11223456799999999999999999999999999999999999999999999999999999998766678899999999


Q ss_pred             EEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHH
Q 013869          241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM  320 (435)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~  320 (435)
                      ++.+.+++..+++.          +.  ++|++.++|+++..+++....        ....++++|.+++||+++++++.
T Consensus       226 ~~~~~~~~~~~~~~----------i~--~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~lr~~~~gg~~l~~~~~  285 (503)
T 4fuq_A          226 IFLPKFDPDKILDL----------MA--RATVLMGVPTFYTRLLQSPRL--------TKETTGHMRLFISGSAPLLADTH  285 (503)
T ss_dssp             EECSSCCHHHHHHH----------HT--TCCEEEECHHHHHHHHTCTTC--------STTTTTTCCEEEECSSCCCHHHH
T ss_pred             EEcCCCCHHHHHHH----------Hh--hcCEEEEHHHHHHHHHhCCCc--------cccchhhcEEEEECCCCCCHHHH
Confidence            99999999998888          44  799999999999999886432        23457899999999999999999


Q ss_pred             HHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEec-CCCCCCCCc-cceEEEecCCccccccCCc
Q 013869          321 QQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-VGEICVKSPSLFKEYWKLP  398 (435)
Q Consensus       321 ~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~~-~Gel~v~~~~~~~gy~~~~  398 (435)
                      +.|.+.++.++++.||+||+++.++.........+++|+|+++++++|+| ++++.++.+ .|||+++|++++.||+++|
T Consensus       286 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~  365 (503)
T 4fuq_A          286 REWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMP  365 (503)
T ss_dssp             HHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCH
T ss_pred             HHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCCh
Confidence            99999999999999999999887766555566778999999999999999 777877777 7999999999999999999


Q ss_pred             hhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          399 KVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       399 ~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +.+.+.|+.+|||+|||+|++|+||++++.||+||+|
T Consensus       366 ~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~i  402 (503)
T 4fuq_A          366 EKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLV  402 (503)
T ss_dssp             HHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCE
T ss_pred             hhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEE
Confidence            9999999989999999999999999999999999986

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=1.4e-65  Score=511.93  Aligned_cols=397  Identities=20%  Similarity=0.281  Sum_probs=333.6

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +|+.+.|.++++++||++|+++.++++||+||.++++++|++|++                 .|+++||+|+++++|+++
T Consensus        25 ~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~~~   87 (539)
T 1mdb_A           25 ETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQK-----------------LGIQQKDRVVVQLPNIKE   87 (539)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEECCCSSHH
T ss_pred             CCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCcHH
Confidence            378999999999999999999999999999999999999999999                 599999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhh-----HHHHHHHHhccCC-c-cccCCCCCCCCCcc
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSGA-K-FSLIPPVPNVSSET  153 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~  153 (435)
                      +++++|||+++|++++|+++.++.+++.++++.++++++|++++.     ...+.......+. . +.......   ...
T Consensus        88 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  164 (539)
T 1mdb_A           88 FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE---EFL  164 (539)
T ss_dssp             HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT---TSE
T ss_pred             HHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc---chh
Confidence            999999999999999999999999999999999999999998753     1222222222221 1 11111100   001


Q ss_pred             ccccc-hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHH-HHH
Q 013869          154 TVFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALL  231 (435)
Q Consensus       154 ~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~  231 (435)
                      ...+. ..........++++++++|||||||.||||.++|+++.+.+......+++.+++++++.+|++|.+++.. .++
T Consensus       165 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~  244 (539)
T 1mdb_A          165 PLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVL  244 (539)
T ss_dssp             EGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHH
T ss_pred             hhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHH
Confidence            11000 0011123456789999999999999999999999999999998888889999999999999999999865 689


Q ss_pred             HHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEec
Q 013869          232 APLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (435)
Q Consensus       232 ~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~  311 (435)
                      .++..|+++++.+.+++..+++.          ++++++|++.++|+++..+++..        .....+++++|.+++|
T Consensus       245 ~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~--------~~~~~~l~~lr~~~~g  306 (539)
T 1mdb_A          245 GVLYAGGRVVLSPSPSPDDAFPL----------IEREKVTITALVPPLAMVWMDAA--------SSRRDDLSSLQVLQVG  306 (539)
T ss_dssp             HHHHTTCEEEECSSSSHHHHHHH----------HHHHTCSEEEECHHHHHHHHHHH--------HHCCCCCTTCCEEEEE
T ss_pred             HHHHhCCEEEECCCCCHHHHHHH----------HHHcCCeEEEccHHHHHHHHhCc--------cccCCCccceeEEEEc
Confidence            99999999999999999998888          56689999999999999998753        2234578999999999


Q ss_pred             CCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCC-CCCCCccceecCC-CeEEEecCCCCCCCCc-cceEEEecC
Q 013869          312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-ARKAGTVGNPLPG-VQVKIAEDESGSDAAG-VGEICVKSP  388 (435)
Q Consensus       312 G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~-~~~~~~~G~p~~~-~~~~i~d~~~~~~~~~-~Gel~v~~~  388 (435)
                      |+++++++.++|.+.+++++++.||+||++..++..... .....++|+|+++ .+++|+|++++.++.+ .|||+++|+
T Consensus       307 G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~  386 (539)
T 1mdb_A          307 GAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGP  386 (539)
T ss_dssp             SSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECT
T ss_pred             CCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEeeCc
Confidence            999999999999999999999999999976544332111 1234689999976 5899999999888777 799999999


Q ss_pred             CccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          389 SLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       389 ~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +++.||+++|+.|.+.|+.+|||+|||+|++|+||+|++.||+||+|
T Consensus       387 ~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~i  433 (539)
T 1mdb_A          387 YTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQI  433 (539)
T ss_dssp             TSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCE
T ss_pred             ccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceE
Confidence            99999999999999999889999999999999999999999999986

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=1.5e-65  Score=509.02  Aligned_cols=396  Identities=25%  Similarity=0.385  Sum_probs=334.6

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCc--ccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQK--SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~--~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~   78 (435)
                      +|+.++|.++++++|+++|+++.++  ++||+||.++++++|++|++.                 |+++||+|+++++|+
T Consensus        16 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~   78 (517)
T 3r44_A           16 KNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTAL-----------------GIAKGDRVALLMPNS   78 (517)
T ss_dssp             GCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSS
T ss_pred             cCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHc-----------------CCCCcCEEEEEcCCC
Confidence            4789999999999999999998766  999999999999999999994                 999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccc-ccc
Q 013869           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETT-VFD  157 (435)
Q Consensus        79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  157 (435)
                      +++++++|||+++|++++|+++.++.+++.++++.++++++|++....+.+.............+. ......... ...
T Consensus        79 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  157 (517)
T 3r44_A           79 VEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTD-WIGADSLAERLRS  157 (517)
T ss_dssp             HHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCE-EEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEE-ccCcccHHHHhhc
Confidence            999999999999999999999999999999999999999999999988877766543321110000 000000000 000


Q ss_pred             chhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcC
Q 013869          158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG  237 (435)
Q Consensus       158 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G  237 (435)
                      .....+.....++++++++|||||||.||+|.++|+++.+.+......+++.+++++++.+|++|..++.. .+.++..|
T Consensus       158 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~~~~G  236 (517)
T 3r44_A          158 AAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTT-VIFSAMRG  236 (517)
T ss_dssp             CCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHH-HHHHHHHT
T ss_pred             cCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHH-HHHHHhcC
Confidence            01111233556899999999999999999999999999999999999999999999999999999999875 44445599


Q ss_pred             CEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCH
Q 013869          238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (435)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~  317 (435)
                      +++++.+.+++..+++.          +.++++|++.++|+++..+.+..        .....+++++|.+++||+++++
T Consensus       237 ~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~--------~~~~~~~~~lr~i~~gGe~l~~  298 (517)
T 3r44_A          237 VTLISMPQFDATKVWSL----------IVEERVCIGGAVPAILNFMRQVP--------EFAELDAPDFRYFITGGAPMPE  298 (517)
T ss_dssp             CEEEECSSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHSH--------HHHHCCCTTCCEEEECSSCCCH
T ss_pred             eEEEEeCCCCHHHHHHH----------HHHhCCeEEEeHHHHHHHHHhCc--------ccccCCCCcccEEEECCCCCCH
Confidence            99999999999999998          56689999999999999998752        2344578899999999999999


Q ss_pred             HHHHHHHHHhCCcccccccCccccchhcc--CCCCCCCCCccceecCCCeEEEecCCCCCCCCccceEEEecCCcccccc
Q 013869          318 PVMQQWETITGHRLLERYGMTEFVMAISN--PLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYW  395 (435)
Q Consensus       318 ~l~~~~~~~~~~~l~~~YG~tE~~~~~~~--~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~~Gel~v~~~~~~~gy~  395 (435)
                      ++.+.|.+. ++++++.||+||+++.++.  ........+++|+|.++++++|+|+++...+.+.|||+++|++++.||+
T Consensus       299 ~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~GEl~v~g~~v~~GY~  377 (517)
T 3r44_A          299 ALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYW  377 (517)
T ss_dssp             HHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSEEEEEEEEETTSCSEET
T ss_pred             HHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCCCeEEEEeCcchhhhhC
Confidence            999999987 9999999999999765442  2222456789999999999999999998888789999999999999999


Q ss_pred             CCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          396 KLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       396 ~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++|+.+.+.| .+|||+|||+|++|+||++++.||+||+|
T Consensus       378 ~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~i  416 (517)
T 3r44_A          378 NRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMI  416 (517)
T ss_dssp             TCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCE
T ss_pred             CChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEE
Confidence            9999999999 58999999999999999999999999986

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=3.9e-65  Score=509.99  Aligned_cols=400  Identities=23%  Similarity=0.349  Sum_probs=334.1

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCC--------cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQ--------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~--------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~   72 (435)
                      +|+.+.|.++++++||++|+++.+        +++||+||.++++++|++|++.                 |+++||+|+
T Consensus        19 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~   81 (549)
T 3g7s_A           19 ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRK-----------------GVRKGEHVG   81 (549)
T ss_dssp             CCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEE
T ss_pred             CCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEE
Confidence            578999999999999999999876        8999999999999999999994                 999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCc
Q 013869           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSE  152 (435)
Q Consensus        73 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (435)
                      |+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++....+.+.............+... .....
T Consensus        82 i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  160 (549)
T 3g7s_A           82 VCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGG-EVNSL  160 (549)
T ss_dssp             EECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETC-SSSCH
T ss_pred             EECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCC-CCcCH
Confidence            99999999999999999999999999999999999999999999999999998887776655443221111110 11110


Q ss_pred             cccccc-hhhhhccCCC-CCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHH
Q 013869          153 TTVFDQ-SQAEKMDGQR-GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL  230 (435)
Q Consensus       153 ~~~~~~-~~~~~~~~~~-~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~  230 (435)
                      ...... .......... ++++++|+|||||||.||+|.++|+++.+.+......+++.+.++++.++|++|..++.. +
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~  239 (549)
T 3g7s_A          161 SEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL-V  239 (549)
T ss_dssp             HHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-H
T ss_pred             HHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-H
Confidence            000000 0001112223 389999999999999999999999999999999999999999999999999999999875 8


Q ss_pred             HHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEe
Q 013869          231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC  310 (435)
Q Consensus       231 ~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~  310 (435)
                      +.++..|+++++.+.+++..+++.          +.++++|++.++|+++..|++..+...      ...+++++|.+++
T Consensus       240 ~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~------~~~~~~~lr~~~~  303 (549)
T 3g7s_A          240 NLMVTVGNEYVVMGMFNQEMLAEN----------IEKYKGTFSWAVPPALNVLVNTLESSN------KTYDWSYLKVFAT  303 (549)
T ss_dssp             TTHHHHCCEEEEESSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHHHSC------CCCCCTTCCEEEE
T ss_pred             HHHHhcCceEEEcCCCCHHHHHHH----------HHHhCCeEEEeCCHHHHHHHhhhhhhc------ccCCccceeEEEe
Confidence            889999999999999999999888          566999999999999999987532111      1246789999999


Q ss_pred             cCCCCCHHHHHHHHHH----hC---CcccccccCccccchhccCC-CCCCCCCccceecCCCeEEEec-CCCCCCCCc-c
Q 013869          311 GSSALPLPVMQQWETI----TG---HRLLERYGMTEFVMAISNPL-RGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-V  380 (435)
Q Consensus       311 ~G~~l~~~l~~~~~~~----~~---~~l~~~YG~tE~~~~~~~~~-~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~~-~  380 (435)
                      ||+++++++.+.|.+.    ++   +++++.||+||++.+++... .......++|+|+++++++|+| ++++.++.+ .
T Consensus       304 gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~  383 (549)
T 3g7s_A          304 GAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGES  383 (549)
T ss_dssp             ESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCC
T ss_pred             CCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCc
Confidence            9999999999999988    56   89999999999987665433 2335678899999999999999 777777766 7


Q ss_pred             ceEEEecCCccccccCCchhcccccc--cCC--ccccCceEEEcCCccEEEecccccCC
Q 013869          381 GEICVKSPSLFKEYWKLPKVTKDSFT--ADG--FFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       381 Gel~v~~~~~~~gy~~~~~~~~~~~~--~~g--~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |||+++|++++.||+++++.+++.|.  .+|  ||+|||+|++|+||+++|.||.||+|
T Consensus       384 GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~i  442 (549)
T 3g7s_A          384 GEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVI  442 (549)
T ss_dssp             EEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC----
T ss_pred             eEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceE
Confidence            99999999999999999999999984  567  99999999999999999999999986

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=4.3e-65  Score=509.82  Aligned_cols=399  Identities=22%  Similarity=0.299  Sum_probs=325.9

Q ss_pred             ChHHHHHHHhcccCCCeeEEE---e--CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEe
Q 013869            1 MEVFKAAYKKGSMARDSVAIR---A--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA   75 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~---~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~   75 (435)
                      +|+.++|.++++++|+++|++   +  .++++||+||.++++++|++|++                 .|+++||+|+|++
T Consensus        20 ~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~   82 (550)
T 3rix_A           20 GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-----------------YGLNTNHRIVVCS   82 (550)
T ss_dssp             SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEEC
T ss_pred             CCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEc
Confidence            478999999999999999986   3  46899999999999999999999                 5999999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC--ccccCCCCCCCCCcc
Q 013869           76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSET  153 (435)
Q Consensus        76 ~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  153 (435)
                      +|++++++++|||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.......+.  .+..+..........
T Consensus        83 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (550)
T 3rix_A           83 ENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ  162 (550)
T ss_dssp             SSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBC
T ss_pred             CCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcc
Confidence            999999999999999999999999999999999999999999999999988877766554432  112221111111100


Q ss_pred             ccccch-----------hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHh---ccCCCCCeeEEeec
Q 013869          154 TVFDQS-----------QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLP  219 (435)
Q Consensus       154 ~~~~~~-----------~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~l~~~p  219 (435)
                      ...+..           ...+.....++++++|+|||||||.||+|.++|+++...+......   .++.+.+++++.+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  242 (550)
T 3rix_A          163 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP  242 (550)
T ss_dssp             BHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred             cHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEech
Confidence            000000           0011122245789999999999999999999999998887776554   46788999999999


Q ss_pred             chhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhh
Q 013869          220 LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA  299 (435)
Q Consensus       220 l~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  299 (435)
                      ++|..+++ .++.++..|+++++.+.+++..+++.          ++++++|++.++|+++..+++...        ...
T Consensus       243 ~~~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~  303 (550)
T 3rix_A          243 FHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRS----------LQDYKIQSALLVPTLFSFFAKSTL--------IDK  303 (550)
T ss_dssp             TTSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHH----------HHHTTCSEEEECHHHHHHHHHCCG--------GGG
T ss_pred             HHHHHHHH-HHHHHHHcCCEEEEeCCCCHHHHHHH----------HHHcCCeEEEeCcHHHHHHHhCcc--------ccc
Confidence            99999986 58889999999999999999998888          566999999999999999987532        233


Q ss_pred             hhccccEEEEecCCCCCHHHHHHHHHHhCCc-ccccccCccccchhccCCCCCCCCCccceecCCCeEEEec-CCCCCCC
Q 013869          300 SAAKQLRLMMCGSSALPLPVMQQWETITGHR-LLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDA  377 (435)
Q Consensus       300 ~~l~~lr~i~~~G~~l~~~l~~~~~~~~~~~-l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~  377 (435)
                      .+++++|.+++||+++++++.+.|.+.++.. +++.||+||+++.++.........+++|+|+++++++|+| ++++.++
T Consensus       304 ~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~  383 (550)
T 3rix_A          304 YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLG  383 (550)
T ss_dssp             SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBCC
T ss_pred             cCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcCCC
Confidence            4688999999999999999999999999875 8999999999877665555556788999999999999999 4566666


Q ss_pred             Cc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          378 AG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       378 ~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      .+ .|||+++|++++.||+++|+.+.+.|+.+|||+|||+|++|+||++++.||+||+|
T Consensus       384 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~i  442 (550)
T 3rix_A          384 VNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLI  442 (550)
T ss_dssp             TTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-------
T ss_pred             CCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchhee
Confidence            66 79999999999999999999999999889999999999999999999999999986

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=3.2e-65  Score=509.87  Aligned_cols=400  Identities=17%  Similarity=0.246  Sum_probs=331.5

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +|+.++|.++++++||++|+++.++++||+||.++++++|++|+++                 |+++||+|+++++|+++
T Consensus        30 ~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~~   92 (544)
T 3o83_A           30 QPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEK-----------------GLGKGDTALVQLPNVAE   92 (544)
T ss_dssp             CCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEECCCSSHH
T ss_pred             CCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHC-----------------CCCCCCEEEEECCCCHH
Confidence            4688999999999999999999999999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhH-----HHHHHHHhccCC--ccccCCCCCCCCCcc
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSGA--KFSLIPPVPNVSSET  153 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~  153 (435)
                      +++++|||+++|++++|+++.++.+++.++++.+++++++++....     ............  .+.............
T Consensus        93 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (544)
T 3o83_A           93 FYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLL  172 (544)
T ss_dssp             HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHH
T ss_pred             HHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchh
Confidence            9999999999999999999999999999999999999999987653     222222222111  111111100000000


Q ss_pred             cccc--chhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHH-HH
Q 013869          154 TVFD--QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-AL  230 (435)
Q Consensus       154 ~~~~--~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~  230 (435)
                      ....  ...........++++++++|||||||.||+|.++|+++...+......+++.+++++++.+|++|.+++.. .+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~  252 (544)
T 3o83_A          173 DWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGA  252 (544)
T ss_dssp             HHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHH
T ss_pred             hhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHH
Confidence            0000  00001113456799999999999999999999999999999999999999999999999999999998764 58


Q ss_pred             HHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEe
Q 013869          231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC  310 (435)
Q Consensus       231 ~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~  310 (435)
                      +.++..|+++++.+.+++..+++.          ++++++|++.++|+++..+++....        ...+++++|.+++
T Consensus       253 ~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~--------~~~~~~~lr~i~~  314 (544)
T 3o83_A          253 LGVLHAGGCVVMAPNPEPLNCFSI----------IQRHQVNMASLVPSAVIMWLEKAAQ--------YKDQIQSLKLLQV  314 (544)
T ss_dssp             HHHHHTTCEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHHHTT--------THHHHTTCCEEEE
T ss_pred             HHHHHcCCEEEECCCCCHHHHHHH----------HHHHCCCEEEechHHHHHHHhchhh--------ccccCCcceEEEE
Confidence            899999999999999999998888          5668999999999999999886432        2346789999999


Q ss_pred             cCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCC-CCCCCccceec-CCCeEEEecCCCCCCCCc-cceEEEec
Q 013869          311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-ARKAGTVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKS  387 (435)
Q Consensus       311 ~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~-~~~~~~~G~p~-~~~~~~i~d~~~~~~~~~-~Gel~v~~  387 (435)
                      ||+++++++.+.|.+.+++++++.||+||++..++..... .....++|+|+ ++++++|+|++++.++.+ .|||+++|
T Consensus       315 gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g  394 (544)
T 3o83_A          315 GGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRG  394 (544)
T ss_dssp             ESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEEC
T ss_pred             cCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEEec
Confidence            9999999999999999999999999999987655432221 22346789996 899999999999988777 79999999


Q ss_pred             CCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          388 PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       388 ~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++++.||+++|+.+.+.|+.+|||+|||+|++|+||++++.||+||+|
T Consensus       395 ~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~i  442 (544)
T 3o83_A          395 PYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQI  442 (544)
T ss_dssp             TTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC---
T ss_pred             CCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEE
Confidence            999999999999999999889999999999999999999999999986

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=2.3e-64  Score=503.32  Aligned_cols=397  Identities=20%  Similarity=0.312  Sum_probs=329.2

Q ss_pred             ChHHHHHHHhcccCCCeeEEE----eCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeC
Q 013869            1 MEVFKAAYKKGSMARDSVAIR----ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~----~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~   76 (435)
                      +|+.+.|.++++++||++|++    ..++++||+||.++++++|++|++.                 |+++||+|+++++
T Consensus        18 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~   80 (541)
T 1v25_A           18 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRAL-----------------GVGVGDRVATLGF   80 (541)
T ss_dssp             CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECC
T ss_pred             CCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcC
Confidence            478899999999999999999    4568999999999999999999994                 9999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC--ccccCCCCCCCCCccc
Q 013869           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSETT  154 (435)
Q Consensus        77 ~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  154 (435)
                      |++++++++|||+++|++++|+++.++.+++.++++.++++++|++++..+.+.......+.  .+..+..... .....
T Consensus        81 n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  159 (541)
T 1v25_A           81 NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP-EGYLA  159 (541)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC-TTCEE
T ss_pred             CcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC-ccccc
Confidence            99999999999999999999999999999999999999999999999888777665443322  1111111100 00000


Q ss_pred             cccch-hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHH--HHhccCCCCCeeEEeecchhhhHHHHHHH
Q 013869          155 VFDQS-QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQML--TEAWEYTSADQFLHCLPLHHVHGLFNALL  231 (435)
Q Consensus       155 ~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~--~~~~~~~~~~~~l~~~pl~~~~g~~~~~~  231 (435)
                      ..+.. .........++++++++|||||||.||+|.++|+++.......  ...+++.+.|++++.+|++|..++. .++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~~  238 (541)
T 1v25_A          160 YEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC-LPY  238 (541)
T ss_dssp             HHHHCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT-HHH
T ss_pred             HHHHhhccCCcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHH-HHH
Confidence            00000 0001134567899999999999999999999999998766552  2455788999999999999999985 478


Q ss_pred             HHHHcCCEEEEcCC-cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEe
Q 013869          232 APLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC  310 (435)
Q Consensus       232 ~~l~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~  310 (435)
                      .++..|+++++.+. +++..+++.          +.++++|++.++|+++..|++..+        ....+++++|.+++
T Consensus       239 ~~l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~lr~i~~  300 (541)
T 1v25_A          239 AATLVGAKQVLPGPRLDPASLVEL----------FDGEGVTFTAGVPTVWLALADYLE--------STGHRLKTLRRLVV  300 (541)
T ss_dssp             HHHHHTCEEEECTTCCSHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHH--------HHTCCCSSCCEEEE
T ss_pred             HHHhcCceEEeeCCCCCHHHHHHH----------HHhcCeeEEecchHHHHHHHhhhh--------ccCCcchhccEEEE
Confidence            89999999999874 688888888          566999999999999999987532        23456899999999


Q ss_pred             cCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCC-----------CCCCCccceecCCCeEEEecCCCCCCCC-
Q 013869          311 GSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-----------ARKAGTVGNPLPGVQVKIAEDESGSDAA-  378 (435)
Q Consensus       311 ~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~-----------~~~~~~~G~p~~~~~~~i~d~~~~~~~~-  378 (435)
                      ||+++++++.+.| +.+++++++.||+||++.+++.....           .....++|+|+++++++|+|++++.++. 
T Consensus       301 gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~  379 (541)
T 1v25_A          301 GGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKD  379 (541)
T ss_dssp             CSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSS
T ss_pred             CCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCC
Confidence            9999999999999 66899999999999998765533211           0234689999999999999999888763 


Q ss_pred             -c-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          379 -G-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       379 -~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                       + .|||+++|++++.||+++|+.|++.|+.+|||+|||+|++|+||++++.||+||+|
T Consensus       380 ~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~i  438 (541)
T 1v25_A          380 GKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLI  438 (541)
T ss_dssp             SCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEE
T ss_pred             CCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeeccccee
Confidence             3 79999999999999999999999999889999999999999999999999999986

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=4.3e-64  Score=501.84  Aligned_cols=397  Identities=23%  Similarity=0.317  Sum_probs=332.4

Q ss_pred             hHHH-HHHHhcccCCCeeEEEe--CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869            2 EVFK-AAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (435)
Q Consensus         2 ~i~~-~~~~~~~~~p~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~   78 (435)
                      |+.+ .|.++++++ +++|+++  .++++||+||.++++++|++|++                 .|+++||+|+|+++|+
T Consensus        26 ~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~   87 (548)
T 2d1s_A           26 GTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-----------------YGLVVDGRIALCSENC   87 (548)
T ss_dssp             HHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECSSC
T ss_pred             cHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCc
Confidence            6788 888899999 9999997  57899999999999999999999                 5999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccC--CccccCCCCCC---CCCcc
Q 013869           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AKFSLIPPVPN---VSSET  153 (435)
Q Consensus        79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~  153 (435)
                      +++++++|||+++|++++|+++.++.+++.++++.++++++|++++..+.+.......+  ..+..+.....   .....
T Consensus        88 ~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (548)
T 2d1s_A           88 EEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLD  167 (548)
T ss_dssp             TTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHH
T ss_pred             hhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHH
Confidence            99999999999999999999999999999999999999999999988777665543332  12222211100   00000


Q ss_pred             ccccch-hh-hhccCC------CCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHh---ccCCCCCeeEEeecchh
Q 013869          154 TVFDQS-QA-EKMDGQ------RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHH  222 (435)
Q Consensus       154 ~~~~~~-~~-~~~~~~------~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~l~~~pl~~  222 (435)
                      ...... .. .+....      .++++++++|||||||.||+|.++|+++.+.+......   +++.+++++++.+|++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h  247 (548)
T 2d1s_A          168 TFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH  247 (548)
T ss_dssp             HHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred             HHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHH
Confidence            000000 00 011111      23899999999999999999999999999888877666   67889999999999999


Q ss_pred             hhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhc
Q 013869          223 VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA  302 (435)
Q Consensus       223 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l  302 (435)
                      ..++...++.++ .|+++++.+.+++..+++.          ++++++|++.++|+++..|++...        ....++
T Consensus       248 ~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l  308 (548)
T 2d1s_A          248 GFGMFTTLGYLI-CGFRVVMLTKFDEETFLKT----------LQDYKCTSVILVPTLFAILNKSEL--------LNKYDL  308 (548)
T ss_dssp             HHHHHHHHHHHH-TTCEEEECCCCCHHHHHHH----------HHHTTEEEEEECHHHHHHHHHCSC--------GGGSCC
T ss_pred             HHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhCcc--------cccccc
Confidence            999876567777 9999999999999998888          566999999999999999987532        123467


Q ss_pred             cccEEEEecCCCCCHHHHHHHHHHh-CCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEec-CCCCCCCCc-
Q 013869          303 KQLRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-  379 (435)
Q Consensus       303 ~~lr~i~~~G~~l~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~~-  379 (435)
                      +++|.+++||+++++++.+.|.+.| +.++++.||+||++.+++.........+++|+|+++++++|+| ++++.++.+ 
T Consensus       309 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~  388 (548)
T 2d1s_A          309 SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNR  388 (548)
T ss_dssp             TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTC
T ss_pred             cceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCccCCCCC
Confidence            8999999999999999999999999 6789999999999876654443445678999999999999999 677777666 


Q ss_pred             cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          380 VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       380 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      .|||+++|++++.||+++|+.+.+.|+.+|||+|||+|++|+||++++.||+||+|
T Consensus       389 ~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~i  444 (548)
T 2d1s_A          389 RGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLI  444 (548)
T ss_dssp             CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCB
T ss_pred             CeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceE
Confidence            79999999999999999999999999889999999999999999999999999986

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=7.2e-64  Score=502.70  Aligned_cols=394  Identities=21%  Similarity=0.333  Sum_probs=331.7

Q ss_pred             HHHHHHhcccCCCeeEEEe-----CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869            4 FKAAYKKGSMARDSVAIRA-----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (435)
Q Consensus         4 ~~~~~~~~~~~p~~~al~~-----~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~   78 (435)
                      ++.|.++|+++||++|+++     .++++||+||.++++++|++|++.                 |+++||+|+|+++|+
T Consensus        59 ~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~-----------------Gv~~Gd~V~l~~~~~  121 (580)
T 3etc_A           59 YDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKH-----------------GIGKGDYVMLTLKSR  121 (580)
T ss_dssp             HHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECTTC
T ss_pred             HHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCC
Confidence            4899999999999999996     346899999999999999999994                 999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhH--HHHHHHHhccCC---ccccCCCCCCCCCcc
Q 013869           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR--EVLQNVASKSGA---KFSLIPPVPNVSSET  153 (435)
Q Consensus        79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~  153 (435)
                      +++++++|||+++|++++|+++.++.+++.++++.++++++|++.+..  +.+.......+.   .+..+.. .......
T Consensus       122 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  200 (580)
T 3etc_A          122 YDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGG-DVLEGWI  200 (580)
T ss_dssp             THHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESS-SCCTTCE
T ss_pred             HHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCC-ccccccc
Confidence            999999999999999999999999999999999999999999987654  555444433322   1121111 0011111


Q ss_pred             ccccch----h----hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhH
Q 013869          154 TVFDQS----Q----AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHG  225 (435)
Q Consensus       154 ~~~~~~----~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  225 (435)
                      ...+..    .    ........++++++++|||||||.||+|.++|.+++..........++.+.+++++..|++|..+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (580)
T 3etc_A          201 DFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKC  280 (580)
T ss_dssp             EHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHH
T ss_pred             cHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHH
Confidence            100000    0    00012467899999999999999999999999998888777666778899999999999999998


Q ss_pred             HHHHHHHHHHcCCEEEEc--CCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhcc
Q 013869          226 LFNALLAPLYAGATVEFM--PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK  303 (435)
Q Consensus       226 ~~~~~~~~l~~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~  303 (435)
                      ++..++.++..|+++++.  +.+++..+++.          +.++++|++.++|++++.|++..         ....+++
T Consensus       281 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~---------~~~~~l~  341 (580)
T 3etc_A          281 VWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK----------ASKYGVTTFCAPPTIYRFLIKED---------LSHYNFS  341 (580)
T ss_dssp             HHHTTHHHHHTTCEEEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHTSC---------C---CCT
T ss_pred             HHHHHHHHHhCCcEEEEecCCCCCHHHHHHH----------HHHHCCeEEEccHHHHHHHHhcc---------cccCCCc
Confidence            876788999999999988  57888888888          56689999999999999998741         2234678


Q ss_pred             ccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCc-cce
Q 013869          304 QLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGE  382 (435)
Q Consensus       304 ~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Ge  382 (435)
                      +||.+++||+++++++.++|.+.+++++++.||+||+++.++.......+.+++|+|+++++++|+|++++.++.+ .||
T Consensus       342 ~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~GE  421 (580)
T 3etc_A          342 TLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGE  421 (580)
T ss_dssp             TCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEECTTSCBCCTTCCEE
T ss_pred             cceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCccccCCCCCEEEEECCCCCCCCCCCceE
Confidence            9999999999999999999999999999999999999877766555566788999999999999999999988777 799


Q ss_pred             EEEec-----CCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          383 ICVKS-----PSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       383 l~v~~-----~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |+++|     +.++.||+++|+.+.+.|. +|||+|||+|++|+||+|+|.||+||+|
T Consensus       422 l~v~~~~g~~~~~~~gY~~~p~~t~~~f~-~gwy~TGDlg~~d~dG~l~~~GR~dd~I  478 (580)
T 3etc_A          422 IVINTMEGKPVGLFVHYGKDPERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRADDII  478 (580)
T ss_dssp             EEEECTTCCCTTCCCEETTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEESSSCE
T ss_pred             EEEecCCCCCCeeeccccCCHhHHHhhcC-CCEEecCcEEEECCCCcEEEEecCCCEE
Confidence            99997     7899999999999999995 8999999999999999999999999986

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=1.4e-63  Score=493.75  Aligned_cols=393  Identities=22%  Similarity=0.290  Sum_probs=325.0

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeC--CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869            1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~   78 (435)
                      ||+.+.|.++++++||++|+++.  ++++||+||.++++++|++|++.                 |+++||+|+++++|+
T Consensus         2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~-----------------Gv~~gd~V~i~~~~~   64 (504)
T 1t5h_X            2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHAD-----------------GLRPQQRVAVVAPNS   64 (504)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSC
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCC
Confidence            57999999999999999999987  88999999999999999999994                 999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEe--chhhHHHHHHHHhccCCccccCCCCCCCCCccccc
Q 013869           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS--TEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVF  156 (435)
Q Consensus        79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (435)
                      +++++++|||+++|++++|+++.++.+++.++++.++++++++  +.+..+.+.....  ...+..+   ..........
T Consensus        65 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~  139 (504)
T 1t5h_X           65 ADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS--GARIIFL---GDLVRDGEPY  139 (504)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCC--CCEEEEG---GGTEETTEEC
T ss_pred             HHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccc--cceeEEe---cchhhcCccc
Confidence            9999999999999999999999999999999999999999999  7776554411111  1111100   0000000000


Q ss_pred             cchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccC--CCCCeeEEeecchhhhHHHHHHHHHH
Q 013869          157 DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEY--TSADQFLHCLPLHHVHGLFNALLAPL  234 (435)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~--~~~~~~l~~~pl~~~~g~~~~~~~~l  234 (435)
                      ............++++++++|||||||.||+|.++|+++.+.+......+++  .+.+++++.+|++|..++...++.++
T Consensus       140 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l  219 (504)
T 1t5h_X          140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL  219 (504)
T ss_dssp             CCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHH
T ss_pred             ccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHH
Confidence            0000011134567899999999999999999999999999998888888888  88899999999999999865689999


Q ss_pred             HcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCC
Q 013869          235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSA  314 (435)
Q Consensus       235 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~  314 (435)
                      ..|+++++.+.+++..+++.          ++++++|++.++|+++..|++.....      .....++++|.+++||++
T Consensus       220 ~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~l~~lr~~~~gG~~  283 (504)
T 1t5h_X          220 ALDGTYVVVEEFRPVDALQL----------VQQEQVTSLFATPTHLDALAAAAAHA------GSSLKLDSLRHVTFAGAT  283 (504)
T ss_dssp             HTTCEEEECSSCCHHHHHHH----------HHHHTCCEEECCHHHHHHHHHHHCCT------TCCCCCTTCCEEEECCTT
T ss_pred             HcCceEEeCCCCCHHHHHHH----------HHHhCCeEEEeChHHHHHHHhhhccc------cccccCccccEEEEcCCc
Confidence            99999999999999998888          56689999999999999998753210      122357899999999999


Q ss_pred             CCHHHHHHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCC---CCCCCc-cceEEEe-cCC
Q 013869          315 LPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDES---GSDAAG-VGEICVK-SPS  389 (435)
Q Consensus       315 l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~---~~~~~~-~Gel~v~-~~~  389 (435)
                      +++++.+.|.+.++.++++.||+||++......   ....+++|+|.++++++++|+++   +.++.+ .|||+++ |+.
T Consensus       284 l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~---~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~  360 (504)
T 1t5h_X          284 MPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMR---QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDS  360 (504)
T ss_dssp             CCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEE---SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTT
T ss_pred             CCHHHHHHHHHhcCcceeeeecccccccccccc---CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCce
Confidence            999999999999999999999999994333222   24567899999999999999887   666666 7999999 999


Q ss_pred             ccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          390 LFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       390 ~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++.||+++|+.+.+.| .+|||+|||+|++|+||++++.||+||+|
T Consensus       361 ~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~i  405 (504)
T 1t5h_X          361 AFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMI  405 (504)
T ss_dssp             SCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCE
T ss_pred             eeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcccCEE
Confidence            9999999999999999 58999999999999999999999999986

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=5.2e-63  Score=490.54  Aligned_cols=392  Identities=21%  Similarity=0.326  Sum_probs=324.4

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +|+.++|.++++++||++|+++.++++||+||.++++++|++|++.                 |+++||+|+++++|+++
T Consensus         6 ~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~~~~~   68 (509)
T 3ivr_A            6 FTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRD-----------------GVHTGDRVAILSQNCSE   68 (509)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSCHH
T ss_pred             CCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCCHH
Confidence            5899999999999999999999999999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccc--cc
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVF--DQ  158 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  158 (435)
                      +++++|||+++|++++|+++.++.+++.++++.+++++++++.+..+.+.............+.............  ..
T Consensus        69 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (509)
T 3ivr_A           69 MIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLAS  148 (509)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGTCC
T ss_pred             HHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhccC
Confidence            9999999999999999999999999999999999999999999888775444333222111111111100101110  11


Q ss_pred             hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCC
Q 013869          159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA  238 (435)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~  238 (435)
                      ..........++++++++|||||||.||+|.++|+++.+.+......+++.++|++++.+|++|..++.. .+.++..|+
T Consensus       149 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~~~~g  227 (509)
T 3ivr_A          149 DTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGL-MLTLQQAGG  227 (509)
T ss_dssp             CSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHHTC
T ss_pred             CCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHH-HHHHHHhCC
Confidence            1112234567899999999999999999999999999999999999999999999999999999999875 555556666


Q ss_pred             EEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHH
Q 013869          239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (435)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~  318 (435)
                      +.++...+++..+++.          +.++++|++.++|+++..+++..          ....++++|.++.+|++   +
T Consensus       228 ~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~----------~~~~l~~lr~~~~~g~~---~  284 (509)
T 3ivr_A          228 ASVIAAKFDPAQAARD----------IEAHKVTVMAEFAPMLGNILDQA----------APAQLASLRAVTGLDTP---E  284 (509)
T ss_dssp             EEEECSSCCHHHHHHH----------HHHHTCCEEEEETTHHHHHHHHC----------CGGGGTTCCEEEEECCH---H
T ss_pred             cEEEecccCHHHHHHH----------HHHHCCcEEEecHHHHHHHHhcc----------cccchhhhheecccCCh---H
Confidence            6666668899998888          56689999999999999998753          33467899999999987   8


Q ss_pred             HHHHHHHHh-CCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccccccC
Q 013869          319 VMQQWETIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWK  396 (435)
Q Consensus       319 l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~  396 (435)
                      +.+.|.+.+ ++++++.||+||++++++..... ....++|+|+++++++|+|++++.++.+ .|||+++|++++.||++
T Consensus       285 ~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~  363 (509)
T 3ivr_A          285 TIERFEATCPNATFWATFGQSETSGLSTFAPYR-DRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWN  363 (509)
T ss_dssp             HHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG-GSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEETT
T ss_pred             HHHHHHHhcCCCeEEcccCccccccccccCccc-cCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEecCCccccccC
Confidence            889999998 89999999999998765533221 2334599999999999999999888777 79999999999999999


Q ss_pred             CchhcccccccCCccccCceEEEcCCccEEEeccc--ccCC
Q 013869          397 LPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRK--GIYF  435 (435)
Q Consensus       397 ~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~--~d~i  435 (435)
                      +|+.+.+.|. +|||+|||+|++|+||++++.||.  +|+|
T Consensus       364 ~~~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~d~~d~i  403 (509)
T 3ivr_A          364 NAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKELI  403 (509)
T ss_dssp             CHHHHHHHTG-GGSEEEEEEEEECTTSCEEEEEEC------
T ss_pred             CHHHhHHHhh-cCCcccccEEEECCCceEEEeCCCCcceeE
Confidence            9999999996 899999999999999999999999  8765

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=4.4e-64  Score=498.56  Aligned_cols=389  Identities=20%  Similarity=0.288  Sum_probs=324.9

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      ||+.+.|.++++++||++|+++.++++||+||.++++++|++|.+                 .|+++||+|+++++|+++
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~g~~~gd~V~i~~~n~~e   63 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISS-----------------EYPDDRSPIMVYGHMQPE   63 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HSTTCCCCEEEEESSCHH
T ss_pred             CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEeCCCHH
Confidence            899999999999999999999999999999999999999999999                 499999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchh
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (435)
                      +++++|||+++|++++|+++.++.+++.++++.+++++++++.....      ..........   ..............
T Consensus        64 ~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~------~~~~~~~~~~---~~~~~~~~~~~~~~  134 (512)
T 3fce_A           64 MIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV------TDLPVRIVSE---DNLKDIFFTHKGNT  134 (512)
T ss_dssp             HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS------SCCSSEEEET---HHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc------cccccceech---hhhhhhcccccccC
Confidence            99999999999999999999999999999999999999999753210      0000000000   00000000000001


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEE
Q 013869          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (435)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~  240 (435)
                      ..+.....++++++++|||||||.||+|.++|+++.+.+......+++.+++++++.+|++|..+++ .++.++..|+++
T Consensus       135 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~  213 (512)
T 3fce_A          135 PNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVM-DIYPSLVTGGTL  213 (512)
T ss_dssp             CCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHH-HHHHHHHTTCEE
T ss_pred             CCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHH-HHHHHHhCCCEE
Confidence            1122356789999999999999999999999999999999999999999999999999999999986 599999999999


Q ss_pred             EEcCC---cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCH
Q 013869          241 EFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (435)
Q Consensus       241 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~  317 (435)
                      ++.+.   +++..+++.          +.++++|++.++|+++..+++...        .....++++|.+++||+++++
T Consensus       214 ~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~~G~~l~~  275 (512)
T 3fce_A          214 WAIDKDMIARPKDLFAS----------LEQSDIQVWTSTPSFAEMCLMEAS--------FSESMLPNMKTFLFCGEVLPN  275 (512)
T ss_dssp             EECCHHHHHSHHHHHHH----------HHHHCCCEEEECHHHHHHHTTSTT--------CSTTTSTTCCEEEECSSCCCH
T ss_pred             EECCHHHhhCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhhcc--------ccchhCccccEEEEecCcCCH
Confidence            99987   677777777          566899999999999999987532        233468899999999999999


Q ss_pred             HHHHHHHHHh-CCcccccccCccccchhccCCC-----CCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCc
Q 013869          318 PVMQQWETIT-GHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSL  390 (435)
Q Consensus       318 ~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~-----~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~  390 (435)
                      ++.+.|.+.| ++++++.||+||+++.++....     ......++|+|.++++++|+|+++..++.+ .|||+++|+++
T Consensus       276 ~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v  355 (512)
T 3fce_A          276 EVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSV  355 (512)
T ss_dssp             HHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEESTTS
T ss_pred             HHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEecccc
Confidence            9999999999 8899999999999876552211     123567899999999999999999988777 79999999999


Q ss_pred             cccccCCchhccccc---ccCCccccCceEEEcCCccEEEecccccCC
Q 013869          391 FKEYWKLPKVTKDSF---TADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       391 ~~gy~~~~~~~~~~~---~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +.||+++|+.+++.|   +++|||+|||+|++ +||++++.||+||+|
T Consensus       356 ~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~i  402 (512)
T 3fce_A          356 SVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQI  402 (512)
T ss_dssp             CSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCE
T ss_pred             ChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEE
Confidence            999999999999988   45679999999999 799999999999986

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=1.4e-63  Score=500.80  Aligned_cols=381  Identities=22%  Similarity=0.315  Sum_probs=315.9

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      +|+++|.++++++||++|+++.++++||+||.++++++|++|++.                 |+++||+|+|+++|++++
T Consensus        76 ~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~~~  138 (570)
T 4gr5_A           76 CVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGL-----------------GVAPGTLVGVHLERGFDM  138 (570)
T ss_dssp             CHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSHHH
T ss_pred             CHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHHH
Confidence            688999999999999999999999999999999999999999994                 999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhh
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (435)
                      ++++|||+++|++++|+++.++.+++.++++.+++++++++.+....+..      .....+  ...     ........
T Consensus       139 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~------~~~~~~--~~~-----~~~~~~~~  205 (570)
T 4gr5_A          139 VVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTG------TTTLYV--EDE-----AASDAPAG  205 (570)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCS------SEEEEC--CC------------CC
T ss_pred             HHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccC------Ccceee--ecc-----cccccccc
Confidence            99999999999999999999999999999999999999999865322110      000000  000     00001111


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEE
Q 013869          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (435)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~  241 (435)
                      .......++++++|+|||||||.||+|.++|+++.+.... ....++.++++++..+|++|..+.+ .++.++..|++++
T Consensus       206 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v  283 (570)
T 4gr5_A          206 NLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGL-ELFGALLFGARCV  283 (570)
T ss_dssp             CCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHH-HHHHHHTTTCEEE
T ss_pred             ccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHH-HHHHHHhcCCEEE
Confidence            1223567899999999999999999999999998766544 3445788899999999999877665 6889999999999


Q ss_pred             EcCC--cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHH
Q 013869          242 FMPK--FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (435)
Q Consensus       242 ~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l  319 (435)
                      +.+.  +++..+++.          ++++++|++.++|+++..|++..           ...++++|.+++||++++.++
T Consensus       284 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~-----------~~~~~~lr~~~~gG~~l~~~~  342 (570)
T 4gr5_A          284 LQSGQNPDPLEIGEL----------VARHGVTMLQLSASLFNFLVDEV-----------PEAFEGVRYAITGGEPASVPH  342 (570)
T ss_dssp             ECSSSSCCHHHHHHH----------HHHHTCCEEEEEHHHHHHHHHHC-----------GGGGTTCSEEEEESSCCCHHH
T ss_pred             EcCCccCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhhc-----------hhhCCCceEEEEecccCCHHH
Confidence            9874  577788787          66699999999999999998642           235789999999999999999


Q ss_pred             HHHHHHHh-CCcccccccCccccchhccCC----CCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCcccc
Q 013869          320 MQQWETIT-GHRLLERYGMTEFVMAISNPL----RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKE  393 (435)
Q Consensus       320 ~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~----~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~g  393 (435)
                      .+++.+.+ ++++++.||+||++++++...    .......++|+|+++++++|+|++++.++.+ .|||+++|++++.|
T Consensus       343 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~G  422 (570)
T 4gr5_A          343 VAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHG  422 (570)
T ss_dssp             HHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCE
T ss_pred             HHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeecccchh
Confidence            99999987 789999999999987655221    1223456799999999999999999888777 79999999999999


Q ss_pred             ccCCchhcccccccC--------CccccCceEEEcCCccEEEecccccCC
Q 013869          394 YWKLPKVTKDSFTAD--------GFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       394 y~~~~~~~~~~~~~~--------g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |+++++.+.+.|+.+        |||+|||+|++|+||+|+|.||+||+|
T Consensus       423 Y~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~I  472 (570)
T 4gr5_A          423 YVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQV  472 (570)
T ss_dssp             ETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-----
T ss_pred             cCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEE
Confidence            999999999998543        799999999999999999999999987

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=8.3e-63  Score=491.39  Aligned_cols=396  Identities=23%  Similarity=0.354  Sum_probs=322.5

Q ss_pred             HHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHHH
Q 013869            3 VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV   82 (435)
Q Consensus         3 i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~~   82 (435)
                      +.+.|.++++ +|+++|+++.++++||+||.++++++|++|++.                 |+++||+|+++++|+++++
T Consensus        26 ~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~~~~   87 (529)
T 2v7b_A           26 AAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTL-----------------GVHPEERILLVMLDTVALP   87 (529)
T ss_dssp             HHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSTHHH
T ss_pred             HHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcCCcHHHH
Confidence            6788888899 999999999899999999999999999999994                 9999999999999999999


Q ss_pred             HHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccC---CccccCCCCCCCC----Ccccc
Q 013869           83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG---AKFSLIPPVPNVS----SETTV  155 (435)
Q Consensus        83 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~  155 (435)
                      +++|||+++|++++|+++.++.+++.++++.++++++|++++..+.+........   ..+..........    .....
T Consensus        88 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (529)
T 2v7b_A           88 VAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEEL  167 (529)
T ss_dssp             HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHH
T ss_pred             HHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhh
Confidence            9999999999999999999999999999999999999999988776655433211   1111111110000    00000


Q ss_pred             cc-chhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHH-HHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHH
Q 013869          156 FD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI-DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP  233 (435)
Q Consensus       156 ~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~  233 (435)
                      .. ...........++++++++|||||||.||+|.++|+++ ..........+++.+.+++++.+|++|..++...++.+
T Consensus       168 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~  247 (529)
T 2v7b_A          168 IDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFP  247 (529)
T ss_dssp             HHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHH
T ss_pred             hccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHH
Confidence            00 00011123456799999999999999999999999998 55554444456788999999999999999987667889


Q ss_pred             HHcCCEEEEc-CCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecC
Q 013869          234 LYAGATVEFM-PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (435)
Q Consensus       234 l~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G  312 (435)
                      +..|+++++. +.+++..+++.          +.++++|++.++|+++..+++..+..        .....++|.+++||
T Consensus       248 l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~--------~~~~~~lr~~~~gG  309 (529)
T 2v7b_A          248 LSVGATAILMAERPTADAIFAR----------LVEHRPTVFYGVPTLYANMLVSPNLP--------ARADVAIRICTSAG  309 (529)
T ss_dssp             HHHTCEEECCCSCCCHHHHHHH----------HHHSCCSEEEECHHHHHHHHTCTTCC--------CGGGCCCCEEEECS
T ss_pred             HhcCcEEEEecCCCCHHHHHHH----------HHHhCCEEEEecHHHHHHHHhCcccc--------cccCCceEEEEEcC
Confidence            9999999988 66788888888          56689999999999999998753211        11124799999999


Q ss_pred             CCCCHHHHHHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCcc
Q 013869          313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLF  391 (435)
Q Consensus       313 ~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~  391 (435)
                      +++++++.+.|.+.+++++++.||+||++.+++.........+++|+|+++++++|+|++++.++.+ .|||+++|++++
T Consensus       310 e~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~  389 (529)
T 2v7b_A          310 EALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAA  389 (529)
T ss_dssp             SCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECTTCC
T ss_pred             CCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecCCcc
Confidence            9999999999999999999999999999655443333335678999999999999999999888777 799999999999


Q ss_pred             ccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          392 KEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       392 ~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      .||+++++.+...|. +|||+|||+|++++||++++.||.||+|
T Consensus       390 ~gY~~~~~~t~~~f~-~~~~~TGDl~~~~~~G~l~~~GR~dd~i  432 (529)
T 2v7b_A          390 VMYWNNREKSRATFL-GEWIRSGDKYCRLPNGCYVYAGRSDDML  432 (529)
T ss_dssp             CCBTTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCB
T ss_pred             cccCCChHHHHHhhh-cCCcccCceEEECCCccEEEeCccCCeE
Confidence            999999999999995 7999999999999999999999999986

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=5.5e-63  Score=499.05  Aligned_cols=379  Identities=19%  Similarity=0.222  Sum_probs=319.4

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      |++++|.++++++||++|+++.++++||+||.++++++|++|++                 .|+++||+|+++++|++++
T Consensus        28 tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~-----------------~Gv~~g~~V~i~~~~s~~~   90 (620)
T 4dg8_A           28 TVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLE-----------------HYPQPGVCLGVYGEYSRES   90 (620)
T ss_dssp             CHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HCCSSCCEEEEESSSCHHH
T ss_pred             CHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHH
Confidence            68999999999999999999999999999999999999999999                 4999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhh
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (435)
                      ++++|||+++|++++|+++.++.+++.++++.+++++++++........      ......+         .........
T Consensus        91 vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~------~~~~~~~---------~~~~~~~~~  155 (620)
T 4dg8_A           91 ITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN------GLPCVPV---------RHLPAAPAS  155 (620)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT------TSCEEEG---------GGCCCCCCC
T ss_pred             HHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc------CCceeee---------ccCCcCCcc
Confidence            9999999999999999999999999999999999999996653211000      0000000         000000011


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEE
Q 013869          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (435)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~  241 (435)
                      .......++++++++|||||||.||||.++|+++.+.... ...+++.+.++++...|++|..+++ .++.++..|++++
T Consensus       156 ~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v  233 (620)
T 4dg8_A          156 VARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATL-EIWGALLNGGCCV  233 (620)
T ss_dssp             SSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred             ccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHH-HHHHHHhcCCEEE
Confidence            1122456899999999999999999999999998776655 4556788999999999999999986 5999999999999


Q ss_pred             EcC--CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHH
Q 013869          242 FMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (435)
Q Consensus       242 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l  319 (435)
                      +.+  .+++..+++.          +.++++|++.++|+++..+++.           ....++++|.+++||++++.++
T Consensus       234 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~~~~l~~~-----------~~~~l~~lr~v~~gGe~l~~~~  292 (620)
T 4dg8_A          234 LNDLGPLDPGVLRQL----------IGERGADSAWLTASLFNTLVDL-----------DPDCLGGLRQLLTGGDILSVPH  292 (620)
T ss_dssp             ECCSSSCCHHHHHHH----------HHTTCCCEEEEEHHHHHHHHHH-----------CGGGGTTCSEEEEESSCCCHHH
T ss_pred             eCccccCCHHHHHHH----------HHHhCCcEEEccHHHHHHHHhc-----------ChhhCCCccEEEEEeCcCCHHH
Confidence            964  5778888887          6679999999999999999763           2346789999999999999999


Q ss_pred             HHHHHHHh-CCcccccccCccccchhcc----CCCCCCCCCccceecCCCeEEEecCCCCC-CCCc-cceEEEecCCccc
Q 013869          320 MQQWETIT-GHRLLERYGMTEFVMAISN----PLRGARKAGTVGNPLPGVQVKIAEDESGS-DAAG-VGEICVKSPSLFK  392 (435)
Q Consensus       320 ~~~~~~~~-~~~l~~~YG~tE~~~~~~~----~~~~~~~~~~~G~p~~~~~~~i~d~~~~~-~~~~-~Gel~v~~~~~~~  392 (435)
                      .+++.+.+ ++++++.||+||++++++.    .........++|+|+++++++|+|+++.. ++.+ .|||+++|+++++
T Consensus       293 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~  372 (620)
T 4dg8_A          293 VRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQ  372 (620)
T ss_dssp             HHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCS
T ss_pred             HHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEecccccc
Confidence            99988876 7899999999999876542    11223456789999999999999998887 5555 7999999999999


Q ss_pred             cccCCchhcccccccC-------CccccCceEEEcCCccEEEecccccCC
Q 013869          393 EYWKLPKVTKDSFTAD-------GFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       393 gy~~~~~~~~~~~~~~-------g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ||+++|+.|++.|..+       +||+|||+|++++||+|+|+||+||+|
T Consensus       373 GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~I  422 (620)
T 4dg8_A          373 GYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQV  422 (620)
T ss_dssp             EETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEE
T ss_pred             ccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEE
Confidence            9999999999999653       799999999999999999999999986

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=1e-62  Score=498.72  Aligned_cols=400  Identities=19%  Similarity=0.273  Sum_probs=332.5

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      ++++++|.++++  ||++|+++.++++||+||.++++++|++|+++                 |+++||+|+++++|+++
T Consensus        27 ~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------Gv~~gd~V~l~~~~s~~   87 (617)
T 3rg2_A           27 LPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQ-----------------GIKPGETALVQLGNVAE   87 (617)
T ss_dssp             CCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSHH
T ss_pred             CCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEECCCcHH
Confidence            478899999998  99999999999999999999999999999995                 99999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhH-----HHHHHHHhccCC-ccccCCCCCCCCCccc
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSGA-KFSLIPPVPNVSSETT  154 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  154 (435)
                      +++++|||+++|++++|+++.++.+++.++++.+++++++++....     ..+......... ....+...........
T Consensus        88 ~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (617)
T 3rg2_A           88 LYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQD  167 (617)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHH
T ss_pred             HHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhh
Confidence            9999999999999999999999999999999999999999997653     222222221111 1111100000000000


Q ss_pred             -cccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHH-HHHH
Q 013869          155 -VFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLA  232 (435)
Q Consensus       155 -~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~  232 (435)
                       ..............++++++++|||||||.||||.++|+++.+.+......+++.+.+++++.+|++|.+++.. .++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~  247 (617)
T 3rg2_A          168 AINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLG  247 (617)
T ss_dssp             HHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHH
T ss_pred             hhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHH
Confidence             00001111223456789999999999999999999999999999999999999999999999999999988764 5889


Q ss_pred             HHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecC
Q 013869          233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS  312 (435)
Q Consensus       233 ~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G  312 (435)
                      ++..|+++++.+.+++..++..          +.++++|++.++|+++..+++.....      .....++++|.+++||
T Consensus       248 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~l~~lr~i~~gG  311 (617)
T 3rg2_A          248 VFLAGGTVVLAADPSATLCFPL----------IEKHQVNVTALVPPAVSLWLQALIEG------ESRAQLASLKLLQVGG  311 (617)
T ss_dssp             HHHHTCEEEECSSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHHTT------CCTTTTTTCCEEEEES
T ss_pred             HHHcCCEEEEeCCCCHHHHHHH----------HHHhCCcEEEcchHHHHHHHHhhhcc------cccccCCCccEEEEcC
Confidence            9999999999999888888887          56699999999999999998753221      1123678999999999


Q ss_pred             CCCCHHHHHHHHHHhCCcccccccCccccchhccCCCC-CCCCCccceec-CCCeEEEecCCCCCCCCc-cceEEEecCC
Q 013869          313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRG-ARKAGTVGNPL-PGVQVKIAEDESGSDAAG-VGEICVKSPS  389 (435)
Q Consensus       313 ~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~-~~~~~~~G~p~-~~~~~~i~d~~~~~~~~~-~Gel~v~~~~  389 (435)
                      +++++++.++|.+.+++++++.||+||++..++..... .....++|+|+ ++++++|+|++++.++.+ .|||+++|++
T Consensus       312 e~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~  391 (617)
T 3rg2_A          312 ARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPY  391 (617)
T ss_dssp             SCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECSS
T ss_pred             CcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEecCcc
Confidence            99999999999999999999999999998655532221 12235789997 788999999999998887 7999999999


Q ss_pred             ccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          390 LFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       390 ~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +++||+++|+.|.+.|+.++||+|||+|++++||.++++||+||+|
T Consensus       392 v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~i  437 (617)
T 3rg2_A          392 TFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQI  437 (617)
T ss_dssp             SCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEE
T ss_pred             ccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEE
Confidence            9999999999999999999999999999999999999999999985

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=3.3e-63  Score=488.99  Aligned_cols=387  Identities=20%  Similarity=0.311  Sum_probs=314.5

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCC---------cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeE
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQ---------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI   71 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~---------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V   71 (435)
                      +|+.+.|.++++++||++|+++.+         +++||+||.++++++|++|++.                 |+ +||+|
T Consensus        24 ~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-----------------g~-~gd~V   85 (480)
T 3t5a_A           24 RSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC-----------------GS-TGDRV   85 (480)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS-----------------SC-TTCEE
T ss_pred             ccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc-----------------CC-CCCEE
Confidence            578999999999999999999754         7999999999999999999994                 85 99999


Q ss_pred             EEEeCCCHHHHHHHHHHHHhCCeEEeCCC---CCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCC----ccccCC
Q 013869           72 GIVAKPSFEFVAGVLGTWFSGCIAVPLAL---SYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA----KFSLIP  144 (435)
Q Consensus        72 ~i~~~~~~~~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~----~~~~~~  144 (435)
                      +|+++|++++++++|||+++|++++|+++   .++.+++.++++.++++++|++.+..+.+.........    .+..+.
T Consensus        86 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (480)
T 3t5a_A           86 VISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVD  165 (480)
T ss_dssp             EEECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGG
T ss_pred             EEEcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEec
Confidence            99999999999999999999999999999   77899999999999999999999887766554332211    111110


Q ss_pred             CCCCCCCccccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCC------CCeeEEee
Q 013869          145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS------ADQFLHCL  218 (435)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~------~~~~l~~~  218 (435)
                      .   ..     .............++++++|+|||||||.||||.++|+++.+++......+.+..      .+++++.+
T Consensus       166 ~---~~-----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~  237 (480)
T 3t5a_A          166 L---LD-----LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWL  237 (480)
T ss_dssp             G---SC-----TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECC
T ss_pred             c---cc-----cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeC
Confidence            0   00     0011112234567789999999999999999999999999999998888888877      89999999


Q ss_pred             cchhhhHHHHHHHHHHHcCCEEEEcCCc----chhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHH
Q 013869          219 PLHHVHGLFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL  294 (435)
Q Consensus       219 pl~~~~g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  294 (435)
                      |++|..++...++.++..|+++++.++.    ++..+++.          ++++++| +..+|+++..++......    
T Consensus       238 pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~~t-~~~~p~~~~~l~~~~~~~----  302 (480)
T 3t5a_A          238 PFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHL----------MASDFHA-FSAAPNFAFELAARRTTD----  302 (480)
T ss_dssp             CTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHH----------TTSSSEE-EEEECHHHHHHHHHHCCT----
T ss_pred             CCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHH----------HHhhcee-EeeChHHHHHHHHhhcCc----
Confidence            9999999877789999999999999864    77777777          7889999 889999998887642211    


Q ss_pred             HHHhhhhccccEEEEecCCCCCHHHHHHHHHHhC------CcccccccCccccchhccCCCC------------------
Q 013869          295 QAASASAAKQLRLMMCGSSALPLPVMQQWETITG------HRLLERYGMTEFVMAISNPLRG------------------  350 (435)
Q Consensus       295 ~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~------~~l~~~YG~tE~~~~~~~~~~~------------------  350 (435)
                      ......++++||.+++||+++++++.++|.+.++      .++++.||+||++.+++.....                  
T Consensus       303 ~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  382 (480)
T 3t5a_A          303 DDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHA  382 (480)
T ss_dssp             GGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBC
T ss_pred             ccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCce
Confidence            1223457899999999999999999999999984      3799999999998766533221                  


Q ss_pred             -------CCCCCccceecCCCeEEEecCC-CCCCCCc-cceEEEecCCccccccCCchhcccccc-----------cCCc
Q 013869          351 -------ARKAGTVGNPLPGVQVKIAEDE-SGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFT-----------ADGF  410 (435)
Q Consensus       351 -------~~~~~~~G~p~~~~~~~i~d~~-~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------~~g~  410 (435)
                             .....++|+|++ ++++|+|++ ++.++.+ .|||+|+|++++.||+++|+.|++.|+           ++||
T Consensus       383 ~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w  461 (480)
T 3t5a_A          383 KPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPW  461 (480)
T ss_dssp             CCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCB
T ss_pred             eecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCe
Confidence                   123458999999 999999977 5666666 799999999999999999999999995           5679


Q ss_pred             cccCceEEEcCCccEEEecc
Q 013869          411 FKTGDTGKQDEDGYYIILGR  430 (435)
Q Consensus       411 ~~TGD~g~~~~dG~l~~~gR  430 (435)
                      |+|||+|+++ ||+|+|.||
T Consensus       462 ~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          462 LRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             EEEEEEEEEE-TTEEEECC-
T ss_pred             eeccceeeEE-CCEEEEeCC
Confidence            9999999996 999999999

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=4.7e-63  Score=489.52  Aligned_cols=382  Identities=37%  Similarity=0.590  Sum_probs=319.8

Q ss_pred             ChHHHHHHHhcccCCC-eeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCH
Q 013869            1 MEVFKAAYKKGSMARD-SVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~-~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~   79 (435)
                      +|+++.|.++++++|+ ++|+++.++++||+||.++++++|.+|..                      |++|+++++|++
T Consensus        22 ~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~----------------------~~~V~i~~~~~~   79 (505)
T 3nyq_A           22 SSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIGG----------------------AGRVAVWATPAM   79 (505)
T ss_dssp             --CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC-------------------------CEEEECCSSH
T ss_pred             chhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhccC----------------------CCEEEEEcCCCH
Confidence            4677888899999887 99999999999999999999999987753                      789999999999


Q ss_pred             HHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccch
Q 013869           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQS  159 (435)
Q Consensus        80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (435)
                      ++++++|||+++|++++|+++.++.+++.++++.+++++++++.+...  .....  ......+..           ...
T Consensus        80 ~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~--~~~~~--~~~~~~~~~-----------~~~  144 (505)
T 3nyq_A           80 ETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL--PPALG--ALERVDVDV-----------RAR  144 (505)
T ss_dssp             HHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC--CGGGT--TSEEEECCT-----------TCC
T ss_pred             HHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc--chhhc--ccccccccc-----------ccc
Confidence            999999999999999999999999999999999999999999875210  00000  000000000           000


Q ss_pred             hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCE
Q 013869          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT  239 (435)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~  239 (435)
                      ...+.....++++++++|||||||.||+|.++|+++.+.+......+++.+.+++++.+|++|..++...++.++..|++
T Consensus       145 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~  224 (505)
T 3nyq_A          145 GAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGS  224 (505)
T ss_dssp             CCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCE
T ss_pred             cCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCE
Confidence            11122345678999999999999999999999999999999999999999999999999999999987778999999999


Q ss_pred             EEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHH
Q 013869          240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV  319 (435)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l  319 (435)
                      +++.+.+++...++.          + ++++|+++++|+++..+++.....+.     ....++++|.+++||+++++++
T Consensus       225 ~~~~~~~~~~~~~~~----------i-~~~~t~~~~~P~~~~~l~~~~~~~~~-----~~~~l~~lr~i~~gg~~l~~~~  288 (505)
T 3nyq_A          225 VRHLGRFSTEGAARE----------L-NDGATMLFGVPTMYHRIAETLPADPE-----LAKALAGARLLVSGSAALPVHD  288 (505)
T ss_dssp             EEECSSCCHHHHHHH----------H-TTTCCEEEECHHHHHHHHHHGGGCHH-----HHHHHHHCSEEEECSSCCCHHH
T ss_pred             EEECCCCChHHHHHH----------H-hhCCeEEEehHHHHHHHHHhhhcCch-----hhcccccceEEEECCCCCCHHH
Confidence            999999999988887          4 47999999999999999886543221     3346788999999999999999


Q ss_pred             HHHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCC----ccceEEEecCCcccccc
Q 013869          320 MQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA----GVGEICVKSPSLFKEYW  395 (435)
Q Consensus       320 ~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~----~~Gel~v~~~~~~~gy~  395 (435)
                      .+.|.+.++.++++.||+||+++.++..........++|+|+++++++|+|++++.++.    ..|||+++|++++.||+
T Consensus       289 ~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY~  368 (505)
T 3nyq_A          289 HERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYL  368 (505)
T ss_dssp             HHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEET
T ss_pred             HHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhhC
Confidence            99999999999999999999987776655555677899999999999999999887653    47999999999999999


Q ss_pred             CCchhcccccccCCccccCceEEEcCCccEEEecccc-cCC
Q 013869          396 KLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKG-IYF  435 (435)
Q Consensus       396 ~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~-d~i  435 (435)
                      ++|+.+.+.|+.+|||+|||+|++|+||++++.||++ |+|
T Consensus       369 ~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~i  409 (505)
T 3nyq_A          369 NRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLI  409 (505)
T ss_dssp             TCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCE
T ss_pred             CChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceE
Confidence            9999999999989999999999999999999999984 764

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=3e-62  Score=490.28  Aligned_cols=394  Identities=20%  Similarity=0.259  Sum_probs=328.4

Q ss_pred             HHHHHHHhccc-----CCCeeEEEeC-----CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 013869            3 VFKAAYKKGSM-----ARDSVAIRAD-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG   72 (435)
Q Consensus         3 i~~~~~~~~~~-----~p~~~al~~~-----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~   72 (435)
                      +.+.|.+++++     +||++|+++.     ++++||+||.++++++|++|++.                +|+++||+|+
T Consensus        40 ~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~----------------~Gv~~gd~V~  103 (570)
T 3c5e_A           40 ASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGA----------------CGLQRGDRVA  103 (570)
T ss_dssp             HHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTT----------------TCCCTTCEEE
T ss_pred             HHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHc----------------cCCCCCCEEE
Confidence            45788888888     9999999972     37899999999999999999983                3999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCc--cccCCCCCCCC
Q 013869           73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPNVS  150 (435)
Q Consensus        73 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  150 (435)
                      |+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++++..+.+.......+..  +..+... ...
T Consensus       104 i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  182 (570)
T 3c5e_A          104 VVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEK-SCD  182 (570)
T ss_dssp             EECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSS-CCT
T ss_pred             EEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEeccc-Ccc
Confidence            9999999999999999999999999999999999999999999999999998887776654443321  1111110 000


Q ss_pred             Cccccccc----hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHH--HHHHHHHhccCCCCCeeEEeecchhhh
Q 013869          151 SETTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA--QVQMLTEAWEYTSADQFLHCLPLHHVH  224 (435)
Q Consensus       151 ~~~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~--~~~~~~~~~~~~~~~~~l~~~pl~~~~  224 (435)
                      ......+.    ..........++++++|+|||||||.||+|.++|+ ++.  ..... ..+++.+.|++++..|++|..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~  260 (570)
T 3c5e_A          183 GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWIL  260 (570)
T ss_dssp             TSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHH
T ss_pred             ccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHH
Confidence            00000000    00011234567899999999999999999999999 444  33333 566788999999999999999


Q ss_pred             HHHHHHHHHHHcCCEEEEcC--CcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhc
Q 013869          225 GLFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA  302 (435)
Q Consensus       225 g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l  302 (435)
                      +++..++.++..|+++++.+  .+++..+++.          +.++++|++.++|+++..+++..         ....++
T Consensus       261 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~---------~~~~~~  321 (570)
T 3c5e_A          261 NILCSLMEPWALGACTFVHLLPKFDPLVILKT----------LSSYPIKSMMGAPIVYRMLLQQD---------LSSYKF  321 (570)
T ss_dssp             HHHHTTHHHHHHTCEEEEECCSSCCHHHHHHH----------HHHSCCCEEEECHHHHHHHHTSC---------TTTCCC
T ss_pred             HHHHHHHHHHHhCceEEEecCCCCCHHHHHHH----------HHHhCCeEEeccHHHHHHHHhcc---------cccccc
Confidence            98767899999999999987  6888888888          56699999999999999998741         123357


Q ss_pred             cccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCc-cc
Q 013869          303 KQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VG  381 (435)
Q Consensus       303 ~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~G  381 (435)
                      +++|.+++||+++++++.+.|.+.+++++++.||+||++..++.........+++|+|+++++++|+|++++.++.+ .|
T Consensus       322 ~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~G  401 (570)
T 3c5e_A          322 PHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEG  401 (570)
T ss_dssp             TTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEECTTSCBCCTTCCE
T ss_pred             ccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCcccccCCCceEEEECCCCCCCCCCCCC
Confidence            89999999999999999999999999999999999999876655443345678999999999999999999888777 79


Q ss_pred             eEEEe-----cCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          382 EICVK-----SPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       382 el~v~-----~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ||+++     |++++.||+++|+.+.+.|. +|||+|||+|++|+||+++|.||+||+|
T Consensus       402 El~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~~~~~TGDlg~~d~dG~l~~~GR~dd~I  459 (570)
T 3c5e_A          402 DIGIRVKPIRPIGIFSGYVDNPDKTAANIR-GDFWLLGDRGIKDEDGYFQFMGRADDII  459 (570)
T ss_dssp             EEEEECSSBCCTTCCCEETTCHHHHHHTEE-TTEEEEEEEEEECTTSCEEEEEEGGGCE
T ss_pred             eeEEeccCCCCchhhccccCChhHhhhhhc-CCccccceeEEEcCCceEEEEecCCCEE
Confidence            99999     99999999999999999995 7999999999999999999999999986

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=1.1e-62  Score=492.61  Aligned_cols=382  Identities=21%  Similarity=0.382  Sum_probs=318.0

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +++.+.|.++++++||++|+++.++++||+||.++++++|++|++.                 |+++||+|+++++|+++
T Consensus        39 ~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~n~~e  101 (563)
T 1amu_A           39 KTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEK-----------------GIGKDTLVGIMMEKSID  101 (563)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSHH
T ss_pred             CcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHH
Confidence            3689999999999999999999999999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchh
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (435)
                      +++++|||+++|++++|+++.++.+++.++++.++++++|++++....+.....  ...+..+.. .....      ...
T Consensus       102 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~------~~~  172 (563)
T 1amu_A          102 LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF--NGQVEIFEE-DTIKI------REG  172 (563)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC--CSEEEECCC-STTTT------SCC
T ss_pred             HHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc--cCceeeecc-hhhcc------ccC
Confidence            999999999999999999999999999999999999999999987654432211  011111110 00000      000


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEE
Q 013869          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (435)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~  240 (435)
                      ........++++++++|||||||.||||.++|+++.+........+++.++|++++.+|++|..+++ .++.++..|+++
T Consensus       173 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~  251 (563)
T 1amu_A          173 TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW-EMFMALLTGASL  251 (563)
T ss_dssp             SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEE
T ss_pred             ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHH-HHHHHHHCCCEE
Confidence            1112244678999999999999999999999999999888888888999999999999999999886 588999999999


Q ss_pred             EEcCC---cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCH
Q 013869          241 EFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (435)
Q Consensus       241 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~  317 (435)
                      ++.+.   +++..+++.          +.++++|++.++|+++..+...              .++++|.+++||+++++
T Consensus       252 v~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~--------------~~~~lr~~~~gG~~l~~  307 (563)
T 1amu_A          252 YIILKDTINDFVKFEQY----------INQKEITVITLPPTYVVHLDPE--------------RILSIQTLITAGSATSP  307 (563)
T ss_dssp             EECCHHHHTCHHHHHHH----------HHHTTCCEEEECHHHHTTSCTT--------------TCCSCSEEEEESSCCCH
T ss_pred             EEcChHhhcCHHHHHHH----------HHHcCCcEEEeCHHHHHHHHhc--------------ccccccEEEEEEecCCH
Confidence            99886   466666666          6669999999999998777432              35789999999999999


Q ss_pred             HHHHHHHHHhCCcccccccCccccchhccCC---CCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCcccc
Q 013869          318 PVMQQWETITGHRLLERYGMTEFVMAISNPL---RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKE  393 (435)
Q Consensus       318 ~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~---~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~g  393 (435)
                      ++.++|.+.  +++++.||+||++.+++...   .......++|+|+++++++|+|++++.++.+ .|||+++|++++.|
T Consensus       308 ~~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~G  385 (563)
T 1amu_A          308 SLVNKWKEK--VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARG  385 (563)
T ss_dssp             HHHHHHTTT--SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCE
T ss_pred             HHHHHHHhC--CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChh
Confidence            999999874  78999999999986655321   1123567899999999999999999888777 79999999999999


Q ss_pred             ccCCchhccccccc------CCccccCceEEEcCCccEEEecccccCC
Q 013869          394 YWKLPKVTKDSFTA------DGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       394 y~~~~~~~~~~~~~------~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |+++|+.|.+.|..      ++||+|||+|++|+||+|+|.||+||+|
T Consensus       386 Y~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~I  433 (563)
T 1amu_A          386 YWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQV  433 (563)
T ss_dssp             ETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEE
T ss_pred             hCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEE
Confidence            99999999998853      4699999999999999999999999986

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=3.7e-62  Score=496.81  Aligned_cols=400  Identities=20%  Similarity=0.274  Sum_probs=326.7

Q ss_pred             HHHHHHHhcccCCCeeEEEe------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeC
Q 013869            3 VFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (435)
Q Consensus         3 i~~~~~~~~~~~p~~~al~~------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~   76 (435)
                      ++++|.++++++||++|+++      ..+++||+||.++++++|++|++                 +|+++||+|+|+++
T Consensus        78 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-----------------~Gv~~Gd~V~i~~~  140 (652)
T 1pg4_A           78 AANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-----------------LGIKKGDVVAIYMP  140 (652)
T ss_dssp             HHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECC
T ss_pred             HHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeC
Confidence            56778889999999999997      34789999999999999999999                 59999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhh---------HHHHHHHHhccC----CccccC
Q 013869           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSG----AKFSLI  143 (435)
Q Consensus        77 ~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~----~~~~~~  143 (435)
                      |++++++++|||+++|++++|+++.++.+++.++++.+++++||+++..         .+.+........    ..+..+
T Consensus       141 ~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~  220 (652)
T 1pg4_A          141 MVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL  220 (652)
T ss_dssp             SSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEE
T ss_pred             CCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEE
Confidence            9999999999999999999999999999999999999999999998753         233333333221    112221


Q ss_pred             CCCC-CCC--C--ccccccc----hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHH-HHHHhccCCCCCe
Q 013869          144 PPVP-NVS--S--ETTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQ  213 (435)
Q Consensus       144 ~~~~-~~~--~--~~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~~~  213 (435)
                      .... ...  .  .....+.    ..........++++++|+|||||||.||||.++|++++.... .....+++.++|+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~  300 (652)
T 1pg4_A          221 KRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDI  300 (652)
T ss_dssp             CSSCCCCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCE
T ss_pred             eCCCCcccccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCE
Confidence            1110 000  0  0000000    000112234578999999999999999999999999877664 4456678999999


Q ss_pred             eEEeecchhhhHHHHHHHHHHHcCCEEEEcCC----cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhcc
Q 013869          214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA  289 (435)
Q Consensus       214 ~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  289 (435)
                      +++..|++|..++...++.+|..|+++++.+.    +++..+++.          ++++++|+++++|++++.|++....
T Consensus       301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~  370 (652)
T 1pg4_A          301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV----------VDKHQVNILYTAPTAIRALMAEGDK  370 (652)
T ss_dssp             EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHH----------HHHHTCSEEEECHHHHHHHHTTGGG
T ss_pred             EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHhcCcc
Confidence            99999999999986678999999999999875    578888888          6669999999999999999875331


Q ss_pred             ccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhC---CcccccccCccccchhccCCC--CCCCCCccceecCCC
Q 013869          290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGV  364 (435)
Q Consensus       290 ~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~~--~~~~~~~~G~p~~~~  364 (435)
                            .....++++||.+++||+++++++++.|.+.++   +++++.||+||+++.++....  ...+.+++|+|++|+
T Consensus       371 ------~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~  444 (652)
T 1pg4_A          371 ------AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGV  444 (652)
T ss_dssp             ------GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTC
T ss_pred             ------ccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCC
Confidence                  112346899999999999999999999999988   899999999999876554322  235678999999999


Q ss_pred             eEEEecCCCCCCCCc-cceEEEec--CCccccccCCchhcccccc--cCCccccCceEEEcCCccEEEecccccCC
Q 013869          365 QVKIAEDESGSDAAG-VGEICVKS--PSLFKEYWKLPKVTKDSFT--ADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       365 ~~~i~d~~~~~~~~~-~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +++|+|++++.++.+ .|||+++|  |+++.||+++++.+.+.|.  .+|||+|||+|++|+||+|+|+||+||+|
T Consensus       445 ~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~I  520 (652)
T 1pg4_A          445 QPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVL  520 (652)
T ss_dssp             CEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEE
T ss_pred             eEEEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEE
Confidence            999999999988877 69999999  7999999999998887763  37899999999999999999999999986

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=2.2e-62  Score=486.13  Aligned_cols=386  Identities=19%  Similarity=0.333  Sum_probs=326.2

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      ||+.+.|.++|+++|+++|+++.++++||+||.++++++|++|.++                .+.++|++|+++++|+++
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~----------------~~~~~g~~V~i~~~n~~~   64 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKR----------------ISGEKKSPILVYGHMEPH   64 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTT----------------SCSSSCCCEEEEESSCHH
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHh----------------cCCCCCCeEEEEecCCHH
Confidence            8999999999999999999999999999999999999999999985                478899999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccc--cc
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVF--DQ  158 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  158 (435)
                      +++++|||+++|++++|+++.++.+++.++++.++++++|++.....      .........+      . .....  ..
T Consensus        65 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~------~~~~~~~~~~------~-~~~~~~~~~  131 (511)
T 3e7w_A           65 MIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSI------DAVGQQIQTV------S-AEELLENEG  131 (511)
T ss_dssp             HHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCT------TCCCCSSCEE------E-HHHHHTSCS
T ss_pred             HHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccc------hhccccccee------c-Hhhhhcccc
Confidence            99999999999999999999999999999999999999999754210      0000000000      0 00000  00


Q ss_pred             hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCC
Q 013869          159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA  238 (435)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~  238 (435)
                      ..........++++++++|||||||.||+|.++|+++.+.+.+....+++.+++++++.+|++|..+++ .++.++..|+
T Consensus       132 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~  210 (511)
T 3e7w_A          132 GSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVM-DLYPCLQSGG  210 (511)
T ss_dssp             CCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHH-HHHHHHHTTC
T ss_pred             CCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHH-HHHHHHhcCC
Confidence            001112345678999999999999999999999999999999999999999999999999999999986 5999999999


Q ss_pred             EEEEcCC---cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCC
Q 013869          239 TVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL  315 (435)
Q Consensus       239 ~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l  315 (435)
                      ++++.+.   +++..+++.          +.++++|++.++|+++..+++...        .....++++|.+++||+++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l~~~~~~G~~l  272 (511)
T 3e7w_A          211 TLHCVTKDAVNKPKVLFEE----------LKKSGLNVWTSTPSFVQMCLMDPG--------FSQDLLPHADTFMFCGEVL  272 (511)
T ss_dssp             EEEECCHHHHHSHHHHHHH----------HHHHCCSEEEECHHHHHHHHTSTT--------CSTTTCTTCCEEEECSSCC
T ss_pred             EEEEcChhhhcCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhccc--------cccccCCcccEEEEecCCC
Confidence            9999987   567777777          566899999999999999987532        2334678999999999999


Q ss_pred             CHHHHHHHHHHh-CCcccccccCccccchhccCCC-----CCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecC
Q 013869          316 PLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSP  388 (435)
Q Consensus       316 ~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~-----~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~  388 (435)
                      ++++.+.|.+.| ++++++.||+||+++.++....     ......++|+|+++++++|+|++++.++.+ .|||+++|+
T Consensus       273 ~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~  352 (511)
T 3e7w_A          273 PVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGP  352 (511)
T ss_dssp             CHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEEEST
T ss_pred             CHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEEecC
Confidence            999999999999 8899999999999876553211     223556799999999999999999988777 799999999


Q ss_pred             CccccccCCchhccccccc-CC--ccccCceEEEcCCccEEEecccccCC
Q 013869          389 SLFKEYWKLPKVTKDSFTA-DG--FFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       389 ~~~~gy~~~~~~~~~~~~~-~g--~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +++.||+++|+.+++.|.. +|  ||+|||+|++ +||++++.||.||+|
T Consensus       353 ~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~i  401 (511)
T 3e7w_A          353 SVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQI  401 (511)
T ss_dssp             TSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEE
T ss_pred             ccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEE
Confidence            9999999999999999842 23  7999999999 699999999999986

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=5e-62  Score=518.13  Aligned_cols=400  Identities=22%  Similarity=0.322  Sum_probs=336.4

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeC--CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869            1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~   78 (435)
                      +|++++|.++++++||++|+++.  ++++||+||.++++++|++|++.                 |+++||+|+|+++|+
T Consensus        61 ~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~-----------------Gv~~gd~V~i~~~ns  123 (979)
T 3tsy_A           61 LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKL-----------------GVNQNDVVMLLLPNC  123 (979)
T ss_dssp             SCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECSSC
T ss_pred             CCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHc-----------------CCCCcCEEEEEeCCC
Confidence            57899999999999999999985  78999999999999999999994                 999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCc------
Q 013869           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSE------  152 (435)
Q Consensus        79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  152 (435)
                      +++++++|||+++|++++|++|.++.+++.++++.++++++|++.+..+.+..........+..+.........      
T Consensus       124 ~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (979)
T 3tsy_A          124 PEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRF  203 (979)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEG
T ss_pred             HHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccH
Confidence            99999999999999999999999999999999999999999999887766555544333322222211110000      


Q ss_pred             cccc----cchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHH----hccCCCCCeeEEeecchhhh
Q 013869          153 TTVF----DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVH  224 (435)
Q Consensus       153 ~~~~----~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~l~~~pl~~~~  224 (435)
                      ....    ......+.....++++++|+|||||||.||+|.++|+++.+.+.....    .+.+.+.+++++.+|++|..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~  283 (979)
T 3tsy_A          204 TELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY  283 (979)
T ss_dssp             GGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHH
T ss_pred             HHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHH
Confidence            0000    001112233567899999999999999999999999999988777654    34577899999999999999


Q ss_pred             HHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccc
Q 013869          225 GLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ  304 (435)
Q Consensus       225 g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~  304 (435)
                      ++...++.++..|+++++.+++++..+++.          +.++++|++.++|+++..+++..+        ....++++
T Consensus       284 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~  345 (979)
T 3tsy_A          284 ALNSIMLCGLRVGAAILIMPKFEINLLLEL----------IQRCKVTVAPMVPPIVLAIAKSSE--------TEKYDLSS  345 (979)
T ss_dssp             HHHHTHHHHHHHTCEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHCGG--------GGTSCCTT
T ss_pred             HHHHHHHHHHhcCcEEEEeCCCCHHHHHHH----------HHHhCCeEEEcHHHHHHHHHhCcc--------ccCCCccc
Confidence            997778899999999999999999988888          566899999999999999987633        23346899


Q ss_pred             cEEEEecCCCCCHHHHHHHHHHh-CCcccccccCccccchhccC-----CCCCCCCCccceecCCCeEEEecC-CCCCCC
Q 013869          305 LRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEFVMAISNP-----LRGARKAGTVGNPLPGVQVKIAED-ESGSDA  377 (435)
Q Consensus       305 lr~i~~~G~~l~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~-----~~~~~~~~~~G~p~~~~~~~i~d~-~~~~~~  377 (435)
                      +|.+++||+++++++.+.|.+.| ++++++.||+||++.+++..     .......+++|+|+++++++|+|+ +++.++
T Consensus       346 lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~  425 (979)
T 3tsy_A          346 IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLS  425 (979)
T ss_dssp             CCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCC
Confidence            99999999999999999999998 88999999999998654422     222346778999999999999994 467766


Q ss_pred             Cc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          378 AG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       378 ~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      .+ .|||+++|++++.||+++|+.+.+.|+.+|||+|||+|++|+||+|+|.||+||+|
T Consensus       426 ~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~i  484 (979)
T 3tsy_A          426 RNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELI  484 (979)
T ss_dssp             TTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC--
T ss_pred             CCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEE
Confidence            66 79999999999999999999999999999999999999999999999999999986

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=1.3e-62  Score=489.14  Aligned_cols=388  Identities=19%  Similarity=0.294  Sum_probs=322.3

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +|+.+.|.++++++|+++|+++.++++||+||.++++++|++|.+.                 |+++||+|+++++|+++
T Consensus         4 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~-----------------g~~~gd~V~i~~~n~~~   66 (521)
T 3l8c_A            4 KDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSL-----------------ALLAKSPVLVFGAQTYD   66 (521)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------CCCTTCCEEEEECSSHH
T ss_pred             HHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEeCCCHH
Confidence            4689999999999999999999999999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchh
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (435)
                      +++++|||+++|++++|+++.++.+++.++++.+++++++++++....+..      .....+   ...  ........+
T Consensus        67 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~------~~~~~~---~~~--~~~~~~~~~  135 (521)
T 3l8c_A           67 MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEG------ISLVSL---SEI--ESAKLAEMP  135 (521)
T ss_dssp             HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTT------SEEEEH---HHH--HHHHHHTCC
T ss_pred             HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccccc------Ccccch---hhh--hhcccccCC
Confidence            999999999999999999999999999999999999999998754211000      000000   000  000000001


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHh--ccCCCCCeeEEeecchhhhHHHHHHHHHHHcCC
Q 013869          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA--WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA  238 (435)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~  238 (435)
                      ........++++++++|||||||.||+|.++|+++.+...+....  +++...++++...|++|..++. .++.++..|+
T Consensus       136 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~  214 (521)
T 3l8c_A          136 YERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM-YWAPTLALGG  214 (521)
T ss_dssp             CCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH-HHHHHHHTTC
T ss_pred             cccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH-HHHHHHhcCC
Confidence            112234567999999999999999999999999999888877665  6778899999999999999876 5889999999


Q ss_pred             EEEEcCCc---chhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCC
Q 013869          239 TVEFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL  315 (435)
Q Consensus       239 ~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l  315 (435)
                      ++++.+.+   ++..++..          +.++++|++.++|+++..++...+        .....++++|.+++||+++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gG~~l  276 (521)
T 3l8c_A          215 TLFALPKELVADFKQLFTT----------IAQLPVGIWTSTPSFADMAMLSDD--------FCQAKMPALTHFYFDGEEL  276 (521)
T ss_dssp             EEEECCGGGTTCHHHHHHH----------HHHSCCSEEEECHHHHHHHHTSTT--------CSTTTCTTCCEEEECSSCC
T ss_pred             EEEEcCHHHhhCHHHHHHH----------HHHcCCcEEEeCCCHHHHHhhhhc--------cccccCccceEEEEecccC
Confidence            99999876   56666666          667999999999999998876532        2234678999999999999


Q ss_pred             CHHHHHHHHHHh-CCcccccccCccccchhccCCC-----CCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecC
Q 013869          316 PLPVMQQWETIT-GHRLLERYGMTEFVMAISNPLR-----GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSP  388 (435)
Q Consensus       316 ~~~l~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~-----~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~  388 (435)
                      ++++.+++.+.+ ++++++.||+||++++++....     ......++|+|+++++++|+|++++.++.+ .|||+++|+
T Consensus       277 ~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~  356 (521)
T 3l8c_A          277 TVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGP  356 (521)
T ss_dssp             CHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEEST
T ss_pred             CHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEEeccc
Confidence            999999999998 8899999999999876553211     123556899999999999999999888777 799999999


Q ss_pred             CccccccCCchhccccc---ccCCccccCceEEEcCCccEEEecccccCC
Q 013869          389 SLFKEYWKLPKVTKDSF---TADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       389 ~~~~gy~~~~~~~~~~~---~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +++.||+++++.+.+.|   +++|||+|||+|++|+||++++.||+||+|
T Consensus       357 ~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i  406 (521)
T 3l8c_A          357 AVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQI  406 (521)
T ss_dssp             TSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBC
T ss_pred             ccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceE
Confidence            99999999999999988   557899999999999999999999999987

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.5e-61  Score=492.53  Aligned_cols=401  Identities=19%  Similarity=0.300  Sum_probs=325.9

Q ss_pred             hHHHHHHHhcccCCCeeEEEe------CCcccCHHHHHHHHHHHHHHHh-hCCCCCccccccccccccccCCCCCeEEEE
Q 013869            2 EVFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLC-SNDLKTTSEKTKNENSAVLAGGCGARIGIV   74 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~------~~~~~Ty~el~~~~~~la~~L~-~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~   74 (435)
                      ++.++|.++++++||++|+++      ..+++||+||.++++++|+.|+ +                 +|+++||+|+|+
T Consensus        83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~-----------------~Gv~~Gd~V~i~  145 (663)
T 1ry2_A           83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS-----------------MGVRKGDTVAVY  145 (663)
T ss_dssp             HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT-----------------SCCCTTCEEEEC
T ss_pred             HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEE
Confidence            457788899999999999997      3478999999999999999999 7                 499999999999


Q ss_pred             eCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhh---------HHHHHHHHhccCC--ccccC
Q 013869           75 AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSGA--KFSLI  143 (435)
Q Consensus        75 ~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~--~~~~~  143 (435)
                      ++|++++++++|||+++|++++|+++.++.+++.++++.+++++||+++..         .+.+.......+.  .+..+
T Consensus       146 ~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~  225 (663)
T 1ry2_A          146 MPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVY  225 (663)
T ss_dssp             CCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEE
T ss_pred             cCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEE
Confidence            999999999999999999999999999999999999999999999998754         2333333332221  12211


Q ss_pred             CCCC--CCC--C--ccccccc----hhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHH-HHHHhccCCCCC
Q 013869          144 PPVP--NVS--S--ETTVFDQ----SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSAD  212 (435)
Q Consensus       144 ~~~~--~~~--~--~~~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~~  212 (435)
                      ....  ...  .  .....+.    ....+.....++++++|+|||||||.||||.++|++++.... .....+++.++|
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d  305 (663)
T 1ry2_A          226 RKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQED  305 (663)
T ss_dssp             CSSCCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSC
T ss_pred             ecCCCCccccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCc
Confidence            1110  000  0  0000000    000112344678999999999999999999999999876664 345567899999


Q ss_pred             eeEEeecchhhhHHHHHHHHHHHcCCEEEEcCC----cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhc
Q 013869          213 QFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYE  288 (435)
Q Consensus       213 ~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  288 (435)
                      ++++..|++|..+....++.+|..|+++++.+.    +++..+++.          |+++++|+++++|++++.|.+...
T Consensus       306 ~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~~~~l~~~~~  375 (663)
T 1ry2_A          306 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI----------IDEHKVTQFYVAPTALRLLKRAGD  375 (663)
T ss_dssp             EEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHH----------HHHTTCSEEEECHHHHHHHTTSCT
T ss_pred             EEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHH----------HHHcCCCEEEecHHHHHHHHhcCc
Confidence            999999999999986678999999999999875    577888888          666999999999999999987532


Q ss_pred             cccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhC---CcccccccCccccchhccCCC---CCCCCCccceecC
Q 013869          289 AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLR---GARKAGTVGNPLP  362 (435)
Q Consensus       289 ~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~~---~~~~~~~~G~p~~  362 (435)
                      ..      ....++++||.+++||+++++++++.+.+.++   +++++.||+||+++.++....   ...+.+++|+|++
T Consensus       376 ~~------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~  449 (663)
T 1ry2_A          376 SY------IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFF  449 (663)
T ss_dssp             TS------SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECT
T ss_pred             cc------cccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcC
Confidence            10      12346899999999999999999999999987   899999999999865553322   2356789999999


Q ss_pred             CCeEEEecC-CCCCCCC-c-cceEEEec--CCccccccCCchhccccccc--CCccccCceEEEcCCccEEEecccccCC
Q 013869          363 GVQVKIAED-ESGSDAA-G-VGEICVKS--PSLFKEYWKLPKVTKDSFTA--DGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       363 ~~~~~i~d~-~~~~~~~-~-~Gel~v~~--~~~~~gy~~~~~~~~~~~~~--~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |++++|+|+ +++.++. + .|||+++|  |+++.||+++++.+.+.|..  +|||+|||+|++|+||+++|+||+||+|
T Consensus       450 g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~I  529 (663)
T 1ry2_A          450 GIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVV  529 (663)
T ss_dssp             TCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCB
T ss_pred             CCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEE
Confidence            999999998 8888765 4 79999999  58999999999998888743  7899999999999999999999999986

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=7.9e-62  Score=481.28  Aligned_cols=386  Identities=24%  Similarity=0.330  Sum_probs=317.5

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      |||.+.|.++++++||++|+++.++++||+||.++++++|++|++                 .   +||+|+++++|+++
T Consensus         1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~---~gd~V~i~~~n~~e   60 (501)
T 3ipl_A            1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKA-----------------Y---QQSRVGLYIDNSIQ   60 (501)
T ss_dssp             --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHT-----------------T---CCSEEEEECCSSHH
T ss_pred             CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHH-----------------c---CCCEEEEEcCCCHH
Confidence            789999999999999999999999999999999999999999987                 2   79999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCcccc-CCCCCC-------C---
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL-IPPVPN-------V---  149 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~---  149 (435)
                      +++++|||+++|++++|+++.++.+++.++++.++++++|++.+.................. ......       .   
T Consensus        61 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (501)
T 3ipl_A           61 SIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYD  140 (501)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC-----------------------
T ss_pred             HHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccc
Confidence            99999999999999999999999999999999999999999876533211100000000000 000000       0   


Q ss_pred             CCcccc--ccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHH
Q 013869          150 SSETTV--FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF  227 (435)
Q Consensus       150 ~~~~~~--~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~  227 (435)
                      ......  .............++++++++|||||||.||+|.++|+++.+........+++.+++++++.+|++|..++.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~  220 (501)
T 3ipl_A          141 TSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLS  220 (501)
T ss_dssp             ---------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHH
T ss_pred             cchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHH
Confidence            000000  011111223456789999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEE
Q 013869          228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL  307 (435)
Q Consensus       228 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~  307 (435)
                      . ++.++..|+++++.+.+++..+++.          ++++++|++.++|+++..|++.....           ..++|.
T Consensus       221 ~-~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~-----------~~~lr~  278 (501)
T 3ipl_A          221 V-LLRAVIEGFTVRIVDKFNAEQILTM----------IKNERITHISLVPQTLNWLMQQGLHE-----------PYNLQK  278 (501)
T ss_dssp             H-HHHHHHHTCEEEECSSCCHHHHHHH----------HHHSCCCEEEECHHHHHHHHHHTCCS-----------CTTCCE
T ss_pred             H-HHHHHHcCceEEeCCCCCHHHHHHH----------HHHcCCcEEEchHHHHHHHHhcCCCC-----------cCcccE
Confidence            5 8899999999999999999999998          56699999999999999998753321           127999


Q ss_pred             EEecCCCCCHHHHHHHHHHhCCcccccccCccccchhccCCC--CCCCCCccceecCCCeEEEecCCCCCCCCccceEEE
Q 013869          308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICV  385 (435)
Q Consensus       308 i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~~Gel~v  385 (435)
                      +++||+++++++.+.+.+ +++++++.||+||+++.++....  ......++|+|+++++++|+|++    +++.|||++
T Consensus       279 i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~----~~~~GEl~v  353 (501)
T 3ipl_A          279 ILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN----KEGHGELMI  353 (501)
T ss_dssp             EEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC----SSCCEEEEE
T ss_pred             EEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC----CCCccEEEE
Confidence            999999999999999988 59999999999998764442221  22466789999999999999976    345799999


Q ss_pred             ecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          386 KSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       386 ~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +|+.++.||+++++.+.. | .+|||+|||+|++|+||++++.||.||+|
T Consensus       354 ~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~i  401 (501)
T 3ipl_A          354 KGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLI  401 (501)
T ss_dssp             ESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCE
T ss_pred             eccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceE
Confidence            999999999999999887 5 58999999999999999999999999986

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=2.3e-61  Score=487.66  Aligned_cols=396  Identities=21%  Similarity=0.340  Sum_probs=323.8

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeC----CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeC
Q 013869            1 MEVFKAAYKKGSMARDSVAIRAD----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~   76 (435)
                      +|+.+.|.++|+++||++|+++.    ++++||+||.++++++|++|++.                 |+++||+|+++++
T Consensus        11 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------gv~~gd~V~i~~~   73 (590)
T 3kxw_A           11 QSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAE-----------------GAKPGDRVLLLFA   73 (590)
T ss_dssp             SSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECC
T ss_pred             ccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHc-----------------CCCCCCEEEEEcC
Confidence            57899999999999999999873    58999999999999999999994                 9999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCeEEeCCCCCC---HHHHHHHHhcCCccEEEechhhHHHHHHHH-hccCCccccCCCCCCCCCc
Q 013869           77 PSFEFVAGVLGTWFSGCIAVPLALSYP---ESELLHVMHDSDISMVLSTEDYREVLQNVA-SKSGAKFSLIPPVPNVSSE  152 (435)
Q Consensus        77 ~~~~~~~~~lA~~~~G~~~v~l~~~~~---~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  152 (435)
                      |++++++++|||+++|++++|+++..+   .+++.++++.+++++++++.+....+.... ...+. ...+   ......
T Consensus        74 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~  149 (590)
T 3kxw_A           74 PGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPK-FLKI---PAIALE  149 (590)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCE-ETTE---EEEEGG
T ss_pred             CchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccc-cccc---ceeech
Confidence            999999999999999999999999884   468899999999999999998776544322 11110 0000   000000


Q ss_pred             cccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHH
Q 013869          153 TTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLA  232 (435)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~  232 (435)
                      ................++++++|+|||||||.||+|.++|+++.+.+......+++.+.+++++++|++|..|+...++.
T Consensus       150 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~  229 (590)
T 3kxw_A          150 SIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILT  229 (590)
T ss_dssp             GCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHH
T ss_pred             hccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHH
Confidence            00001111122345678999999999999999999999999999999999999999999999999999999998766899


Q ss_pred             HHHcCCEEEEcCCc----chhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEE
Q 013869          233 PLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLM  308 (435)
Q Consensus       233 ~l~~G~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i  308 (435)
                      ++..|+++++.+++    ++..+++.          +.++++|++.++|.++..+++.....     .....+++++|.+
T Consensus       230 ~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~~-----~~~~~~l~~lr~~  294 (590)
T 3kxw_A          230 PIYGGIQAIMMSPFSFLQNPLSWLKH----------ITKYKATISGSPNFAYDYCVKRIREE-----KKEGLDLSSWVTA  294 (590)
T ss_dssp             HHHHTCEEEECCHHHHHHCTHHHHHH----------HHHHTCSEEEECTHHHHHHHHHCCGG-----GGTTCCCTTCCEE
T ss_pred             HHhcCceEEEeCHHHHHHCHHHHHHH----------HHHhCCeeecCChhHHHHHHHHhhhh-----hccCCCchhhHHH
Confidence            99999999999876    67777777          66699999999999999998754321     1234578999999


Q ss_pred             EecCCCCCHHHHHHHHHHhC------CcccccccCccccchhccCCC---------------------------CCCCCC
Q 013869          309 MCGSSALPLPVMQQWETITG------HRLLERYGMTEFVMAISNPLR---------------------------GARKAG  355 (435)
Q Consensus       309 ~~~G~~l~~~l~~~~~~~~~------~~l~~~YG~tE~~~~~~~~~~---------------------------~~~~~~  355 (435)
                      ++||+++++++.+.|.+.|+      .++++.||+||++++++....                           ......
T Consensus       295 ~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (590)
T 3kxw_A          295 FNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLV  374 (590)
T ss_dssp             EECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEE
T ss_pred             hhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEe
Confidence            99999999999999999883      379999999999876553211                           112346


Q ss_pred             ccceecCCCeEEEecCC-CCCCCCc-cceEEEecCCccccccCCchhccccccc------CC--ccccCceEEEcCCccE
Q 013869          356 TVGNPLPGVQVKIAEDE-SGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTA------DG--FFKTGDTGKQDEDGYY  425 (435)
Q Consensus       356 ~~G~p~~~~~~~i~d~~-~~~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~g--~~~TGD~g~~~~dG~l  425 (435)
                      ++|+|+++  ++|+|++ +..++.+ .|||+++|++++.||+++|+.|++.|..      +|  ||+|||+|++| ||+|
T Consensus       375 ~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l  451 (590)
T 3kxw_A          375 SSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENEL  451 (590)
T ss_dssp             CCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEE
T ss_pred             ccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEE
Confidence            78999998  7888877 6666666 7999999999999999999999999864      24  99999999998 9999


Q ss_pred             EEecccccCC
Q 013869          426 IILGRKGIYF  435 (435)
Q Consensus       426 ~~~gR~~d~i  435 (435)
                      +|.||+||+|
T Consensus       452 ~~~GR~dd~I  461 (590)
T 3kxw_A          452 YVTGRIKDLI  461 (590)
T ss_dssp             EEEEESSCHH
T ss_pred             EEEcCccceE
Confidence            9999999986

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=6.8e-60  Score=473.80  Aligned_cols=388  Identities=18%  Similarity=0.228  Sum_probs=305.2

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCC----------cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCe
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQ----------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGAR   70 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~----------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~   70 (435)
                      ||+.+.|.++|+++||++|+++.+          +++||+||.++++++|++|.+.                 |+ +||+
T Consensus        20 ~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-----------------g~-~gd~   81 (562)
T 3ite_A           20 VPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHA-----------------SL-HGRA   81 (562)
T ss_dssp             CCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHT-----------------TC-SSCE
T ss_pred             CCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhc-----------------CC-CCCE
Confidence            688999999999999999999642          7899999999999999999994                 88 7999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCC
Q 013869           71 IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS  150 (435)
Q Consensus        71 V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (435)
                      |+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+     ........+. .....
T Consensus        82 V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~-~~~~~  155 (562)
T 3ite_A           82 IAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLD-TKNQS  155 (562)
T ss_dssp             EEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEE-TTCHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeec-ccchh
Confidence            99999999999999999999999999999999999999999999999999987543211     0000000000 00000


Q ss_pred             CccccccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHh--------ccCCCCCeeEEeecchh
Q 013869          151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA--------WEYTSADQFLHCLPLHH  222 (435)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--------~~~~~~~~~l~~~pl~~  222 (435)
                      ..................++++++|+|||||||.||+|.++|+++.+........        ..+...+++++..|++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (562)
T 3ite_A          156 FIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAF  235 (562)
T ss_dssp             HHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTS
T ss_pred             hhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchh
Confidence            0000000001111234457888999999999999999999999998887766543        34678899999999999


Q ss_pred             hhHHHHHHHHHHHcCCEEEEcCCcch-hHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhh
Q 013869          223 VHGLFNALLAPLYAGATVEFMPKFSV-RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA  301 (435)
Q Consensus       223 ~~g~~~~~~~~l~~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  301 (435)
                      ..++. .++.++..|+++++.+.+.. ..+++.          ++++++|++.++|++++.+...            ..+
T Consensus       236 ~~~~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~~~~~------------~~~  292 (562)
T 3ite_A          236 DVHIG-EMFLAWRFGLCAVTGERLSMLDDLPRT----------FRELGVTHAGIVPSLLDQTGLV------------PED  292 (562)
T ss_dssp             THHHH-HHHHHHHTTCEEEECCHHHHHHSHHHH----------HHHTTCCEEEECHHHHHHHTCC------------GGG
T ss_pred             hhhHH-HHHHHHhcccEEEecchhhCHHHHHHH----------HHHcCCCEEEcCHHHHhhcccC------------ccc
Confidence            88875 58889999999999887553 445555          6669999999999988776432            236


Q ss_pred             ccccEEEEecCCCCCHHHHHHHHHHhCCcccccccCccccchhcc-CCCCCCCCCccceecCCCeEEEecCC-CCCCCCc
Q 013869          302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISN-PLRGARKAGTVGNPLPGVQVKIAEDE-SGSDAAG  379 (435)
Q Consensus       302 l~~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~-~~~~~~~~~~~G~p~~~~~~~i~d~~-~~~~~~~  379 (435)
                      ++++|.+++||+++++++.+.|.+.+++++++.||+||+++.++. .........++|+|+++++++|+|++ +..++.+
T Consensus       293 ~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g  372 (562)
T 3ite_A          293 APHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKG  372 (562)
T ss_dssp             STTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTT
T ss_pred             cCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCC
Confidence            789999999999999999999999889999999999999865553 22334566789999999999999965 4546655


Q ss_pred             -cceEEEecCCccccccCCchhcccccc-cCCccccCceEEEcCCccEEEecccccCC
Q 013869          380 -VGEICVKSPSLFKEYWKLPKVTKDSFT-ADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       380 -~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                       .|||+++|++++.||+++|+.+...+. +++||+|||+|++|+||+|+|.||+||+|
T Consensus       373 ~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~I  430 (562)
T 3ite_A          373 MAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQV  430 (562)
T ss_dssp             SCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC----
T ss_pred             CceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEE
Confidence             799999999999999999998887653 23499999999999999999999999987

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=1.1e-58  Score=504.25  Aligned_cols=385  Identities=23%  Similarity=0.349  Sum_probs=320.9

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      +++++|.++++++||++|+++.++++||+||.++++++|++|+++                 |+++|++|+|+++|++++
T Consensus       465 ~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~-----------------Gv~~g~~V~i~~~~s~~~  527 (1304)
T 2vsq_A          465 PLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKH-----------------GAGKGSVVALYTKRSLEL  527 (1304)
T ss_dssp             CHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEECCCSSHHH
T ss_pred             CHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhc-----------------CcCCcCEEEEEeCCCHHH
Confidence            588999999999999999999999999999999999999999995                 999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchhh
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA  161 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (435)
                      ++++|||+++|+++||++|.++.+++.++++.+++++++++.+....+....  .......+.   ..   ... .....
T Consensus       528 vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~--~~~~~~~~~---~~---~~~-~~~~~  598 (1304)
T 2vsq_A          528 VIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP--YTGTTLFID---DQ---TRF-EEQAS  598 (1304)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC--CCSEEEESS---CG---GGG-GSCSS
T ss_pred             HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccC--CCCcEEEec---cc---ccc-ccccC
Confidence            9999999999999999999999999999999999999999986533211100  000001110   00   000 00111


Q ss_pred             hhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEE
Q 013869          162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE  241 (435)
Q Consensus       162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~  241 (435)
                      .+.....+++++|++|||||||.||||.++|+++.+. .+....+++.+.++++...|++|..+.+ .++.++..|++++
T Consensus       599 ~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~  676 (1304)
T 2vsq_A          599 DPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTF-DFYASMLNAARLI  676 (1304)
T ss_dssp             CCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred             CCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHH-HHHHHHHcCCEEE
Confidence            1223456899999999999999999999999998765 3444556788999999999999988875 6999999999999


Q ss_pred             EcCC---cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHH
Q 013869          242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP  318 (435)
Q Consensus       242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~  318 (435)
                      +.+.   .++..+.+.          +.++++|++.++|+++..+.+..           ...++++|.+++||++++.+
T Consensus       677 ~~~~~~~~~~~~l~~~----------i~~~~vt~~~~~p~~~~~l~~~~-----------~~~~~~lr~~~~gGe~l~~~  735 (1304)
T 2vsq_A          677 IADEHTLLDTERLTDL----------ILQENVNVMFATTALFNLLTDAG-----------EDWMKGLRCILFGGERASVP  735 (1304)
T ss_dssp             ECCGGGTTCHHHHHHH----------HHHHTCCEEEEEHHHHHHHHHHC-----------SHHHHTCSEEEEESSCCCHH
T ss_pred             ECChhhcCCHHHHHHH----------HHHcCCcEEEccHHHHHHHHhhc-----------hhcCCCccEEEEecCCCCHH
Confidence            9985   567777777          56689999999999999997631           22467899999999999999


Q ss_pred             HHHHHHHHhC-CcccccccCccccchhccCC----CCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccc
Q 013869          319 VMQQWETITG-HRLLERYGMTEFVMAISNPL----RGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFK  392 (435)
Q Consensus       319 l~~~~~~~~~-~~l~~~YG~tE~~~~~~~~~----~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~  392 (435)
                      +.++|.+.++ .+++|.||+||+++.++...    .......++|+|++|++++|+|++++.++.+ .|||+|+|+++++
T Consensus       736 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~  815 (1304)
T 2vsq_A          736 HVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSK  815 (1304)
T ss_dssp             HHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCC
T ss_pred             HHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEeccccCc
Confidence            9999999884 68999999999987655321    1223456899999999999999999998888 7999999999999


Q ss_pred             cccCCchhccccccc------CCccccCceEEEcCCccEEEecccccCC
Q 013869          393 EYWKLPKVTKDSFTA------DGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       393 gy~~~~~~~~~~~~~------~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ||+++|+.|+++|..      ++||+|||+|++++||.|+|+||+||+|
T Consensus       816 GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qv  864 (1304)
T 2vsq_A          816 GYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQV  864 (1304)
T ss_dssp             CBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEE
T ss_pred             cccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEE
Confidence            999999999999853      4599999999999999999999999975

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=3.1e-38  Score=297.60  Aligned_cols=218  Identities=18%  Similarity=0.255  Sum_probs=188.2

Q ss_pred             CCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcch
Q 013869          169 GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV  248 (435)
Q Consensus       169 ~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~  248 (435)
                      .++++||+|||||||.||+|.+||+++.+++......+++.++|++++++|++|..|+. .++.++..|+++++.++.. 
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~~~~~-  113 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLM-MLVRGMELDWELTVTEPTA-  113 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEECCCS-
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHH-HHHHHHHhCcEEEecCccc-
Confidence            48999999999999999999999999999999999999999999999999999999987 4888999999999886531 


Q ss_pred             hHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhC
Q 013869          249 RGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG  328 (435)
Q Consensus       249 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~  328 (435)
                       +.++.          ++++++|++.++|+++..+++...         ...+++++|.+++||+++++++.+++++ ++
T Consensus       114 -~~~~~----------i~~~~~t~~~~~P~~l~~ll~~~~---------~~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~  172 (358)
T 4gs5_A          114 -NPLAG----------LDHADFDFVAMVPMQLQSILENSA---------TSGQVDRLGKVLLGGAPVNHALAMQISD-LA  172 (358)
T ss_dssp             -CTTTT----------CSSCCCSEEEECHHHHHHHHHCTT---------TGGGGGGGCSEEECSSCCCHHHHHHHHT-CS
T ss_pred             -cHHHH----------HHHhCCeEEEcChHHHHHhhcccc---------ccccCCcceEEEEcccCCCchheecccc-cC
Confidence             22222          788999999999999999987532         2346899999999999999999999987 48


Q ss_pred             CcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCccceEEEecCCccccccCCchhcccccccC
Q 013869          329 HRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTAD  408 (435)
Q Consensus       329 ~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~  408 (435)
                      +++++.||+||++..++.........+++|.+.||+++.+.+.         ||++++|+..                .+
T Consensus       173 ~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~~---------Gel~~~g~~~----------------~~  227 (358)
T 4gs5_A          173 MPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDER---------GCLHISGAVT----------------NG  227 (358)
T ss_dssp             SCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECTT---------SEEEEESGGG----------------TT
T ss_pred             ceEEeccccccccceeecccccccccceeeccCCCeEEEecCc---------CceEEecccc----------------cC
Confidence            9999999999998766654444566788999999999998765         9999998642                47


Q ss_pred             CccccCceEEEcCCccEEEecccccCC
Q 013869          409 GFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       409 g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      |||+|||+|++|+|| ++++||+||+|
T Consensus       228 g~~~TGDlg~~d~~g-~~~~GR~dd~I  253 (358)
T 4gs5_A          228 QTVQTNDLVEIHGNA-FQWIGRADNVI  253 (358)
T ss_dssp             CCEEEEEEEEECSSE-EEEEEEGGGEE
T ss_pred             cceecCCccccccCc-eEEcccccCeE
Confidence            899999999999988 66779999986

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=1.3e-35  Score=288.31  Aligned_cols=237  Identities=16%  Similarity=0.169  Sum_probs=195.0

Q ss_pred             CCC-CCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHH---hccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEE
Q 013869          167 QRG-EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF  242 (435)
Q Consensus       167 ~~~-~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~  242 (435)
                      ..+ +++++++|||||||.||+|.++|+++.+.......   ..++.++++++...|++|..+.+..++.++..|+++++
T Consensus        82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~  161 (436)
T 3qov_A           82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP  161 (436)
T ss_dssp             SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred             CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence            445 88999999999999999999999999777666543   45889999999999998777766678899999999999


Q ss_pred             cCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHHH
Q 013869          243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ  322 (435)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~  322 (435)
                      .+.+++..+++.          +.++++|++.++|+++..|++..+...      ....++++|.+++||+++++++.+.
T Consensus       162 ~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~------~~~~~~~lr~i~~gGe~l~~~~~~~  225 (436)
T 3qov_A          162 AAAGNSKRQIKF----------ISDFKTTALHAIPSYAIRLAEVFQEEG------IDPRETTLKTLVIGAEPHTDEQRRK  225 (436)
T ss_dssp             CCSCCHHHHHHH----------HHHHTCCEEECCHHHHHHHHHHHHHTT------CCTTSSSCCEEEEESSCCCHHHHHH
T ss_pred             CCCCCHHHHHHH----------HHHHCCCEEEECHHHHHHHHHHHHHcC------CCcccCCccEEEEeCCcCCHHHHHH
Confidence            999999888888          566899999999999999988643211      1113789999999999999999999


Q ss_pred             HHHHhCCcccccccCccccch-hccCCCCCCCCCccceecCCCeEEEec-CCCCCCCCc-cceEEEecCCccccccCCch
Q 013869          323 WETITGHRLLERYGMTEFVMA-ISNPLRGARKAGTVGNPLPGVQVKIAE-DESGSDAAG-VGEICVKSPSLFKEYWKLPK  399 (435)
Q Consensus       323 ~~~~~~~~l~~~YG~tE~~~~-~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~~-~Gel~v~~~~~~~gy~~~~~  399 (435)
                      |.+.|++++++.||+||+++. +....   ......+.|.++++++|+| ++++.++.+ .|||+++|..          
T Consensus       226 ~~~~~g~~v~~~YG~TE~~~~~~~~~~---~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~----------  292 (436)
T 3qov_A          226 IERMLNVKAYNSFGMTEMNGPGVAFEC---QEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD----------  292 (436)
T ss_dssp             HHHHHTSEEEEEEEEGGGTEEEEEEEC---TTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS----------
T ss_pred             HHHHhCccEEecCcchhhcCCeeEEec---CCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC----------
Confidence            999999999999999999543 33221   1223477888899999999 678777776 7999999842          


Q ss_pred             hcccccccCCccccCceEEEcCCc------c---EEEecccccCC
Q 013869          400 VTKDSFTADGFFKTGDTGKQDEDG------Y---YIILGRKGIYF  435 (435)
Q Consensus       400 ~~~~~~~~~g~~~TGD~g~~~~dG------~---l~~~gR~~d~i  435 (435)
                        ...+ ..+||+|||+|+++++|      +   +++.||.||+|
T Consensus       293 --~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~i  334 (436)
T 3qov_A          293 --REMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMF  334 (436)
T ss_dssp             --CCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCE
T ss_pred             --cCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEE
Confidence              2333 47899999999999998      6   69999999986

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=2.6e-35  Score=286.71  Aligned_cols=237  Identities=19%  Similarity=0.117  Sum_probs=190.7

Q ss_pred             CCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHH---hccCCCCCeeEEeecch-hhhHHHHHHHHHHHcCCEEE
Q 013869          166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLH-HVHGLFNALLAPLYAGATVE  241 (435)
Q Consensus       166 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~-~~~g~~~~~~~~l~~G~~~~  241 (435)
                      ...++++++++|||||||.||+|.++|+++.........   .+++.++++++...|++ |..++. .++.++..|++++
T Consensus        88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~~~~~G~~~~  166 (443)
T 2y4o_A           88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLG-IHYGAERLGCMVV  166 (443)
T ss_dssp             SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHHTCEEE
T ss_pred             CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHH-HHHHHHHcCCEEE
Confidence            446789999999999999999999999998776555443   56889999999999994 555554 5888999999999


Q ss_pred             EcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHH
Q 013869          242 FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQ  321 (435)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~  321 (435)
                      +.+.+++..+++.          +.++++|++.++|+++..|++..+...      ....++++|.+++||+++++++++
T Consensus       167 ~~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~------~~~~~~~lr~i~~gGe~l~~~~~~  230 (443)
T 2y4o_A          167 PMSGGQTEKQVQL----------IRDFEPKIILVTPSYMLNLIDEMVRQG------MDPAESSLKIGIFGAEPWTQALRN  230 (443)
T ss_dssp             CCCSCCHHHHHHH----------HHHHCCSEEEECHHHHHHHHHHHHHTT------CCGGGSSCCEEEEESSCCCHHHHH
T ss_pred             ECCCCCHHHHHHH----------HHHhCCcEEEECHHHHHHHHHHHHHcC------CCcccCCceEEEECCCcCCHHHHH
Confidence            9998898888888          566899999999999999987533211      011358999999999999999999


Q ss_pred             HHHHHhCCcccccccCccc-cc-hhccCCCCCCCCCccceecCCCeEEEecC-CCCCCCCc-cceEEEecCCccccccCC
Q 013869          322 QWETITGHRLLERYGMTEF-VM-AISNPLRGARKAGTVGNPLPGVQVKIAED-ESGSDAAG-VGEICVKSPSLFKEYWKL  397 (435)
Q Consensus       322 ~~~~~~~~~l~~~YG~tE~-~~-~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~~~~~~~~-~Gel~v~~~~~~~gy~~~  397 (435)
                      .|++.|++++++.||+||+ +. +......   .....+.|.++++++|+|+ +++.++.+ .|||+++|.         
T Consensus       231 ~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~---------  298 (443)
T 2y4o_A          231 EVETRVGIDALDIYGLSEVMGPGVACECVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL---------  298 (443)
T ss_dssp             HHHHHHTCEEEEEEEETTTTEEEEEEECTT---TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES---------
T ss_pred             HHHHHhCcCEEeccCchhhcCCeEEeccCC---CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC---------
Confidence            9999999999999999997 43 3322211   1113566778999999995 57777766 799999973         


Q ss_pred             chhcccccccCCccccCceEEEcCC-ccE-----EEecccccCC
Q 013869          398 PKVTKDSFTADGFFKTGDTGKQDED-GYY-----IILGRKGIYF  435 (435)
Q Consensus       398 ~~~~~~~~~~~g~~~TGD~g~~~~d-G~l-----~~~gR~~d~i  435 (435)
                         +.+.| ..+||+|||+|++++| |++     ++.||.||+|
T Consensus       299 ---t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i  338 (443)
T 2y4o_A          299 ---TKEAM-PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDML  338 (443)
T ss_dssp             ---SCSSS-CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCE
T ss_pred             ---CcccC-hhheeecCCEEEEcCCCCCCccccCccccccCCeE
Confidence               22334 4789999999999999 987     8999999986

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=6.6e-34  Score=276.29  Aligned_cols=237  Identities=19%  Similarity=0.109  Sum_probs=191.0

Q ss_pred             CCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHH---HhccCCCCCeeEEeecc-hhhhHHHHHHHHHHHcCCEEE
Q 013869          166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPL-HHVHGLFNALLAPLYAGATVE  241 (435)
Q Consensus       166 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~l~~~pl-~~~~g~~~~~~~~l~~G~~~~  241 (435)
                      ...++++++++|||||||.||+|.++|+++........   ..+++.++|+++...|+ +|..++. .++.++..|++++
T Consensus        86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~  164 (437)
T 2y27_A           86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLG-AHYGAERAGLTVI  164 (437)
T ss_dssp             SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHTTCEEE
T ss_pred             cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchH-HHHHHHHcCCEEE
Confidence            34668999999999999999999999999877665443   35678899999999998 5666664 5888999999999


Q ss_pred             EcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHHH
Q 013869          242 FMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQ  321 (435)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~  321 (435)
                      +.+.+++..+++.          +.++++|++.++|+++..|++..+...      ....++++|.+++||+++++++.+
T Consensus       165 ~~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~------~~~~~~~lr~i~~gGe~l~~~~~~  228 (437)
T 2y27_A          165 PFGGGQTEKQVQL----------IQDFRPDIIMVTPSYMLSIADEIERQG------LDPVQSSLRIGIFGAEPWTNDMRV  228 (437)
T ss_dssp             CCCSCCHHHHHHH----------HHHHCCSEEEECHHHHHHHHHHHHHTT------CCGGGSSCCEEEEESSCCCHHHHH
T ss_pred             eCCCCCHHHHHHH----------HHHhCCCEEEECHHHHHHHHHHHHHcC------CCcccCCeeEEEEcCccCCHHHHH
Confidence            9998888888888          566899999999999999987533211      011358899999999999999999


Q ss_pred             HHHHHhCCcccccccCccc-cc-hhccCCCCCCCCCccceecCCCeEEEecC-CCCCCCCc-cceEEEecCCccccccCC
Q 013869          322 QWETITGHRLLERYGMTEF-VM-AISNPLRGARKAGTVGNPLPGVQVKIAED-ESGSDAAG-VGEICVKSPSLFKEYWKL  397 (435)
Q Consensus       322 ~~~~~~~~~l~~~YG~tE~-~~-~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~~~~~~~~-~Gel~v~~~~~~~gy~~~  397 (435)
                      .|++.|++++++.||+||+ +. ++.....   .....+.|.+++.++|+|+ +++.++.+ .|||+++|.         
T Consensus       229 ~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~---------  296 (437)
T 2y27_A          229 AIEQRMGIDAVDIYGLSEVMGPGVASECVE---TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL---------  296 (437)
T ss_dssp             HHHHHHTSEEEEEEEETTTTEEEEEECCTT---TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES---------
T ss_pred             HHHHHHCcCEEecCCchhhcCCeeEEecCC---CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC---------
Confidence            9999999999999999997 43 3332221   1123667778999999995 47777766 799999983         


Q ss_pred             chhcccccccCCccccCceEEEcC-CccE-----EEecccccCC
Q 013869          398 PKVTKDSFTADGFFKTGDTGKQDE-DGYY-----IILGRKGIYF  435 (435)
Q Consensus       398 ~~~~~~~~~~~g~~~TGD~g~~~~-dG~l-----~~~gR~~d~i  435 (435)
                         +.+.| .++||+|||+|++++ ||++     ++.||.||+|
T Consensus       297 ---t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i  336 (437)
T 2y27_A          297 ---TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMM  336 (437)
T ss_dssp             ---SCSSS-CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCE
T ss_pred             ---CcCCc-hhheeecCCEEEEeCCCCCCccccCccccccCCeE
Confidence               22334 478999999999999 6986     8999999986

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.96  E-value=2.3e-29  Score=238.81  Aligned_cols=198  Identities=19%  Similarity=0.229  Sum_probs=161.2

Q ss_pred             CCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHH---HhccCCCCCeeEEeecc-hhhhHHHHHHHHHHHcCCEEE
Q 013869          166 GQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPL-HHVHGLFNALLAPLYAGATVE  241 (435)
Q Consensus       166 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~l~~~pl-~~~~g~~~~~~~~l~~G~~~~  241 (435)
                      ...++++++++|||||||.||+|.++|+++.....+..   ...++.+++++++..|+ +|..++.. .+.++..|+ ++
T Consensus        87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v  164 (369)
T 3hgu_A           87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MF  164 (369)
T ss_dssp             TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CE
T ss_pred             cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHH-HHHHHHcCC-EE
Confidence            34778999999999999999999999999988887544   44567889999999999 99988864 666799999 67


Q ss_pred             EcCCcchh-----------------------HHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHh
Q 013869          242 FMPKFSVR-----------------------GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAAS  298 (435)
Q Consensus       242 ~~~~~~~~-----------------------~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  298 (435)
                      ++..+++.                       .+++.          ++++++|++.++|+++..|++..+        ..
T Consensus       165 ~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~~--------~~  226 (369)
T 3hgu_A          165 FSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNT----------LMNQDIRFLVTTPPVLRELLKRPE--------VV  226 (369)
T ss_dssp             ECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------HHHSCEEEEEECHHHHHHHTTCHH--------HH
T ss_pred             ECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHH----------HHhCCCCEEEeCHHHHHHHHhhhh--------hh
Confidence            77776766                       44445          667999999999999999988622        23


Q ss_pred             hhhccccEEEEecCCCCCHHHHHHHH-HHh-CCcccccccCccccchhccCCCCCCCCCcccee------cCCCeEEEec
Q 013869          299 ASAAKQLRLMMCGSSALPLPVMQQWE-TIT-GHRLLERYGMTEFVMAISNPLRGARKAGTVGNP------LPGVQVKIAE  370 (435)
Q Consensus       299 ~~~l~~lr~i~~~G~~l~~~l~~~~~-~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p------~~~~~~~i~d  370 (435)
                      ...++++|.+++||++++++++++|. +.| ++++++.||+||+++++.....     .++|+|      .++++++|+|
T Consensus       227 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~~~G~~~~~~~~~~~~~v~ivD  301 (369)
T 3hgu_A          227 LQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----TSESQQVIYDSFSPFITYDVVD  301 (369)
T ss_dssp             HHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----CTTCSSCEEECCTTTEEEEEEC
T ss_pred             ccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----ccCCCcccccCCCCCeEEEEEC
Confidence            34678899999999999999999999 899 8999999999999876543221     158888      9999999999


Q ss_pred             C-CCCCCCCc-cceEEEecC
Q 013869          371 D-ESGSDAAG-VGEICVKSP  388 (435)
Q Consensus       371 ~-~~~~~~~~-~Gel~v~~~  388 (435)
                      + +++.++.+ .|||++++.
T Consensus       302 ~~~g~~vp~G~~GEl~vt~l  321 (369)
T 3hgu_A          302 SITAQTVEYGERGNVIVTHL  321 (369)
T ss_dssp             TTTCSBCCTTCEEEEEEEEE
T ss_pred             CCCCcCCCCCCceEEEEEEc
Confidence            7 78887777 799999873

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=97.78  E-value=7.6e-05  Score=72.99  Aligned_cols=114  Identities=14%  Similarity=0.100  Sum_probs=63.0

Q ss_pred             hhccc---cEEEEecCCCCCHHHHHHHHHHh-CCccc-ccccCccccchhccCCCCCCCCCccc-eecCC-CeEEEecCC
Q 013869          300 SAAKQ---LRLMMCGSSALPLPVMQQWETIT-GHRLL-ERYGMTEFVMAISNPLRGARKAGTVG-NPLPG-VQVKIAEDE  372 (435)
Q Consensus       300 ~~l~~---lr~i~~~G~~l~~~l~~~~~~~~-~~~l~-~~YG~tE~~~~~~~~~~~~~~~~~~G-~p~~~-~~~~i~d~~  372 (435)
                      .-+|+   +..+..||-   ..-...++..+ +.+++ ..|++||+. +..+... ...+...+ ...++ +-.+-++.+
T Consensus       294 ~lWPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p-~~~~~~~~~~L~~~~~ffEFip~~  368 (581)
T 4eql_A          294 RLWPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT-FGINLDP-LCKPEDVSYTFMPNMSYFEFIPMD  368 (581)
T ss_dssp             HHSTTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE-EEECSCT-TSCGGGCCEEECTTSSEEEEEECS
T ss_pred             HhCCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce-eeeccCC-CCCcccCceeecCCcEEEEEEecc
Confidence            45677   555555562   33345555555 66777 899999963 2222211 11111222 22232 333444422


Q ss_pred             C----CC-----CCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcC----CccEEEecccccCC
Q 013869          373 S----GS-----DAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDE----DGYYIILGRKGIYF  435 (435)
Q Consensus       373 ~----~~-----~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~----dG~l~~~gR~~d~i  435 (435)
                      .    +.     +..| .+||++.+..   |.|              -|++||+++++.    ...+.|.||.+|+|
T Consensus       369 ~~~~~~~v~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l  428 (581)
T 4eql_A          369 GGDKNDVVDLEDVKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVL  428 (581)
T ss_dssp             TTCCSSCEEGGGCCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEE
T ss_pred             ccCCCcEeCHHHcCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEE
Confidence            1    11     2223 5888887642   222              189999999975    46899999999875

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=97.68  E-value=0.00042  Score=67.98  Aligned_cols=33  Identities=18%  Similarity=0.190  Sum_probs=27.1

Q ss_pred             cCCCCCCcEEEEecCCCC-CCCceEEeehHHHHH
Q 013869          165 DGQRGEDPALIVYTSGTT-GKPKGVVHTHKSIDA  197 (435)
Q Consensus       165 ~~~~~~~~~~i~~TSGtT-G~pK~v~~t~~~l~~  197 (435)
                      ....++.+.++..||||| |.||-|.+|...+-.
T Consensus        94 ~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~  127 (609)
T 4b2g_A           94 AILSAHPISEFLTSSGTSAGERKLMPTIQEELDR  127 (609)
T ss_dssp             SSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred             CccCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence            345667788999999999 779999999887644

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=97.65  E-value=0.00029  Score=68.80  Aligned_cols=116  Identities=12%  Similarity=0.147  Sum_probs=62.4

Q ss_pred             hhhccccEEE--EecCCCCCHHHHHHHHHHh-CCccc-ccccCccccchhccCCCCCCCCCc-cceecCCC-eEEEe--c
Q 013869          299 ASAAKQLRLM--MCGSSALPLPVMQQWETIT-GHRLL-ERYGMTEFVMAISNPLRGARKAGT-VGNPLPGV-QVKIA--E  370 (435)
Q Consensus       299 ~~~l~~lr~i--~~~G~~l~~~l~~~~~~~~-~~~l~-~~YG~tE~~~~~~~~~~~~~~~~~-~G~p~~~~-~~~i~--d  370 (435)
                      ..-+|+++.+  +.+|. + ..-...++..+ +.++. ..|++||+- +..+... ...++. ....+|+. -.+-+  +
T Consensus       298 ~~lWPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p-~~~~~~~~~~L~p~~~ffEFiP~~  373 (581)
T 4epl_A          298 PALFPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEGW-IAANVTP-RLSPEEATFAVIPNLGYFEFLPVS  373 (581)
T ss_dssp             HHHCTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTEE-EEECCCT-TSCTTTCCEEECTTSCEEEEEEC-
T ss_pred             HHhCCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceecccee-eeeecCC-CCCccccceeecCCcEEEEEEecc
Confidence            3467888644  33442 2 33335565555 66777 899999963 3322221 112211 22233332 22333  2


Q ss_pred             CCCC---------CCCCc-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCC----ccEEEecccccCC
Q 013869          371 DESG---------SDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDED----GYYIILGRKGIYF  435 (435)
Q Consensus       371 ~~~~---------~~~~~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~d----G~l~~~gR~~d~i  435 (435)
                      +.++         ++..| .+||++..-.   |.|              -|++||++++..-    ..+.|.||.+++|
T Consensus       374 ~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l  435 (581)
T 4epl_A          374 ETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLIL  435 (581)
T ss_dssp             ------CCCEEGGGCCTTCEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCB
T ss_pred             cccCCCCceeeHHHcCCCCeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeE
Confidence            2211         12333 6888887642   222              1899999999642    5799999999875

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=91.59  E-value=1.5  Score=41.30  Aligned_cols=91  Identities=10%  Similarity=0.138  Sum_probs=73.0

Q ss_pred             cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCC--CHHHHHHHHHHHHhCCeEEeCCCCC
Q 013869           25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP--SFEFVAGVLGTWFSGCIAVPLALSY  102 (435)
Q Consensus        25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~--~~~~~~~~lA~~~~G~~~v~l~~~~  102 (435)
                      ..+|.+.+...+..++..+..                 .++.++|++....+.  +...+...++++..|+.+++++.. 
T Consensus       108 v~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-  169 (437)
T 2y27_A          108 VGYTAADIDTWANLVARSIRA-----------------AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-  169 (437)
T ss_dssp             EEECHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-
T ss_pred             EecCHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-
Confidence            358999998888777777766                 488999999998885  344555678889999999987654 


Q ss_pred             CHHHHHHHHhcCCccEEEechhhHHHHHHHH
Q 013869          103 PESELLHVMHDSDISMVLSTEDYREVLQNVA  133 (435)
Q Consensus       103 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~  133 (435)
                      ..+.+...+++.++.+++..+.....+....
T Consensus       170 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~  200 (437)
T 2y27_A          170 QTEKQVQLIQDFRPDIIMVTPSYMLSIADEI  200 (437)
T ss_dssp             CHHHHHHHHHHHCCSEEEECHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCEEEECHHHHHHHHHHH
Confidence            7888899999999999999998887766543

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=91.23  E-value=1.8  Score=40.92  Aligned_cols=89  Identities=16%  Similarity=0.180  Sum_probs=72.4

Q ss_pred             ccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC--HHHHHHHHHHHHhCCeEEeCCCCCC
Q 013869           26 SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLALSYP  103 (435)
Q Consensus        26 ~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~  103 (435)
                      .+|.+.+...+..++..+..                 +++.++|++...++-+  ...+...++++..|+.+++++.. .
T Consensus       111 ~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~  172 (443)
T 2y4o_A          111 GYTARDIDTWANVTARSIRA-----------------AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-Q  172 (443)
T ss_dssp             EECHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-C
T ss_pred             ecCHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-C
Confidence            58999998888877777766                 4889999999988853  44556678888999999987664 7


Q ss_pred             HHHHHHHHhcCCccEEEechhhHHHHHHH
Q 013869          104 ESELLHVMHDSDISMVLSTEDYREVLQNV  132 (435)
Q Consensus       104 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  132 (435)
                      .+.+...+++.++.+++..+.....+...
T Consensus       173 ~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~  201 (443)
T 2y4o_A          173 TEKQVQLIRDFEPKIILVTPSYMLNLIDE  201 (443)
T ss_dssp             HHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCcEEEECHHHHHHHHHH
Confidence            78888999999999999999887766554

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=90.33  E-value=2.1  Score=40.35  Aligned_cols=91  Identities=16%  Similarity=0.069  Sum_probs=73.7

Q ss_pred             cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC--HHHHHHHHHHHHhCCeEEeCCCCC
Q 013869           25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLALSY  102 (435)
Q Consensus        25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~  102 (435)
                      ..+|.+.+...+..++..+..                 .++.++|++....+-+  ...+..+++++..|+.+++.+.. 
T Consensus       104 v~~th~~~~~~~~~~~~~~~~-----------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-  165 (436)
T 3qov_A          104 IVHSQHDLDSWANLVARCLYM-----------------VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-  165 (436)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-
T ss_pred             EEECHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-
Confidence            358999998888888887776                 4889999999988753  44556778889999999987654 


Q ss_pred             CHHHHHHHHhcCCccEEEechhhHHHHHHHH
Q 013869          103 PESELLHVMHDSDISMVLSTEDYREVLQNVA  133 (435)
Q Consensus       103 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~  133 (435)
                      ..+.+...+++.++.+++..+.....+....
T Consensus       166 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  196 (436)
T 3qov_A          166 NSKRQIKFISDFKTTALHAIPSYAIRLAEVF  196 (436)
T ss_dssp             CHHHHHHHHHHHTCCEEECCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCEEEECHHHHHHHHHHH
Confidence            6788899999999999999998887766553

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=87.71  E-value=5.9  Score=37.97  Aligned_cols=98  Identities=11%  Similarity=0.051  Sum_probs=74.3

Q ss_pred             CCCeeEEEe---------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC-HHHHH
Q 013869           14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS-FEFVA   83 (435)
Q Consensus        14 ~p~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~-~~~~~   83 (435)
                      .|+.+|++.         ++..+|.+.+...+......                    .++.++|++...+|-. ...+.
T Consensus       161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~--------------------~~~~~~d~~l~~~p~~~~~g~~  220 (501)
T 3ipl_A          161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES--------------------LGFDRDTNWLSVLPIYHISGLS  220 (501)
T ss_dssp             CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH--------------------TCCCTTCEEEECSCTTSHHHHH
T ss_pred             CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh--------------------hCCCccCEEEEeCcHHHHHHHH
Confidence            567777764         12468888887776665543                    3778899999888765 33444


Q ss_pred             HHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHH
Q 013869           84 GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV  132 (435)
Q Consensus        84 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  132 (435)
                      .+++++..|+..+..+. ..++.+...+++.++.+++..+.....+...
T Consensus       221 ~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  268 (501)
T 3ipl_A          221 VLLRAVIEGFTVRIVDK-FNAEQILTMIKNERITHISLVPQTLNWLMQQ  268 (501)
T ss_dssp             HHHHHHHHTCEEEECSS-CCHHHHHHHHHHSCCCEEEECHHHHHHHHHH
T ss_pred             HHHHHHHcCceEEeCCC-CCHHHHHHHHHHcCCcEEEchHHHHHHHHhc
Confidence            57788899999888754 6788899999999999999999888776554

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=81.86  E-value=8.7  Score=37.34  Aligned_cols=97  Identities=12%  Similarity=0.118  Sum_probs=70.0

Q ss_pred             CeeEEEe---------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH--HHHH
Q 013869           16 DSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE--FVAG   84 (435)
Q Consensus        16 ~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~--~~~~   84 (435)
                      +.+|++.         ++..+|.+.+...+......+..                 .++.++|++...+|-.-.  +...
T Consensus       192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~p~~h~~g~~~~  254 (548)
T 2d1s_A          192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG-----------------NQVSPGTAVLTVVPFHHGFGMFTT  254 (548)
T ss_dssp             TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTS-----------------CCCCTTCEEEECSCTTSHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhc-----------------cCCCccceEEEeccHHHHHHHHHH
Confidence            7777764         23468998887666555443322                 377889999888876522  2334


Q ss_pred             HHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHH
Q 013869           85 VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN  131 (435)
Q Consensus        85 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~  131 (435)
                      +++++ .|+..+..+ ...++.+...+++.++.+++..+.....+..
T Consensus       255 ~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  299 (548)
T 2d1s_A          255 LGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNK  299 (548)
T ss_dssp             HHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred             HHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence            56777 999988775 4678889999999999999999988776654

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=81.62  E-value=8  Score=37.63  Aligned_cols=86  Identities=15%  Similarity=0.101  Sum_probs=64.1

Q ss_pred             EEeehHHHHHHHHHHHHhc---cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCCcch-hHHHHHHHhhcCCCC
Q 013869          188 VVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSV-RGIWQRWRESYPVNG  263 (435)
Q Consensus       188 v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~~~-~~~~~~~~~~~~~~~  263 (435)
                      ..+|++.+...+..++..+   ++.++|++...+|-+.-.  +..+++++..|+..+..+...+ ..+...         
T Consensus        49 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~vpl~~~~~~~~l~~~---------  117 (550)
T 3rix_A           49 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF--FMPVLGALFIGVAVAPANDIYNERELLNS---------  117 (550)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT--HHHHHHHHHHTCEEEECCTTCCHHHHHHH---------
T ss_pred             cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH--HHHHHHHHHcCCEEeecCCcCCHHHHHHH---------
Confidence            3789999988877776654   788999999998876544  3468999999999998876444 444444         


Q ss_pred             CccccccceeccccHHHHHHHh
Q 013869          264 NRAGEAITAFTGVPTMYTRLIQ  285 (435)
Q Consensus       264 ~i~~~~~t~~~~~P~~~~~l~~  285 (435)
                       +...+++.++..+..+..+.+
T Consensus       118 -l~~~~~~~vi~~~~~~~~~~~  138 (550)
T 3rix_A          118 -MNISQPTVVFVSKKGLQKILN  138 (550)
T ss_dssp             -HHHHCCSEEEECGGGHHHHHH
T ss_pred             -HHhcCCeEEEEcHHHHHHHHH
Confidence             444688889888887766654

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=80.68  E-value=16  Score=35.41  Aligned_cols=99  Identities=14%  Similarity=0.094  Sum_probs=72.4

Q ss_pred             CCCeeEEEe---------CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCH--HHH
Q 013869           14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF--EFV   82 (435)
Q Consensus        14 ~p~~~al~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~--~~~   82 (435)
                      .|+.+|++.         ++..+|.+.+...+......+                    ++.++|++...+|-+-  .+.
T Consensus       180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~h~~~~~  239 (539)
T 1mdb_A          180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC--------------------WLDHSTVYLAALPMAHNYPLS  239 (539)
T ss_dssp             CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH--------------------TCCTTCEEEECSCTTSHHHHH
T ss_pred             CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh--------------------CCCCCCEEEEeecccccchhh
Confidence            456677763         224689988877766554433                    6788999988887652  222


Q ss_pred             H-HHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHH
Q 013869           83 A-GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVA  133 (435)
Q Consensus        83 ~-~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~  133 (435)
                      . .+++++..|+..+..+ ...++.+...+++.++.+++..+.....+....
T Consensus       240 ~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  290 (539)
T 1mdb_A          240 SPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAA  290 (539)
T ss_dssp             SSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCc
Confidence            2 4788889999998765 457888999999999999999998887765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	435
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	2e-73
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	9e-61
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	2e-58
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	5e-54
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	4e-46
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	2e-39
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	2e-35

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  240 bits (613), Expect = 2e-73
 Identities = 86/455 (18%), Positives = 147/455 (32%), Gaps = 68/455 (14%)

Query: 16  DSVAI------RADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA 69
           D  AI       +  K  SY +L     R ++ L    +K                  G 
Sbjct: 87  DRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIK-----------------KGD 129

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
            + I      E    +L     G +   +   +    +   + DS   +V++ ++     
Sbjct: 130 VVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAG 189

Query: 130 QNVASKSGAKFSLIPPVPNVSSETTVFD----------------------QSQAEKMDGQ 167
           +++  K     +L  P         V                         S   + +  
Sbjct: 190 RSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAM 249

Query: 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQV-QMLTEAWEYTSADQFLHCLPLHHVHGL 226
             EDP  I+YTSG+TGKPKGV+HT               ++Y   D +     +  V G 
Sbjct: 250 NAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGH 309

Query: 227 FNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQG 286
              L  PL  GAT              R  +            +      PT    L+  
Sbjct: 310 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVV------DKHQVNILYTAPTAIRALMAE 363

Query: 287 YEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH---RLLERYGMTEFVMA 343
            +        +S      LR++      +     + +    G     +++ +  TE    
Sbjct: 364 GDKAIEGTDRSS------LRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGF 417

Query: 344 ISNPLRGA--RKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKS--PSLFKEYWKLP 398
           +  PL GA   KAG+   P  GVQ  + ++E         G + +    P   +  +   
Sbjct: 418 MITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDH 477

Query: 399 KVTKDSF--TADGFFKTGDTGKQDEDGYYIILGRK 431
           +  + ++  T    + +GD  ++DEDGYY I GR 
Sbjct: 478 ERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRV 512

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  206 bits (525), Expect = 9e-61
 Identities = 80/457 (17%), Positives = 151/457 (33%), Gaps = 69/457 (15%)

Query: 16  DSVAI------RADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA 69
           +  AI           S +Y +L     +++ +L  +                +    G 
Sbjct: 74  NKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS----------------MGVRKGD 117

Query: 70  RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129
            + +      E +  +L     G I   +   +  + L   ++D D  +V++T++     
Sbjct: 118 TVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGG 177

Query: 130 QNVASK---------------------SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQR 168
           + + +K                     +           ++   T               
Sbjct: 178 KVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVD 237

Query: 169 GEDPALIVYTSGTTGKPKGVVHTHKS-IDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227
            EDP  ++YTSG+TG PKGV H+    +   +  +   ++    D F     +  + G  
Sbjct: 238 SEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHT 297

Query: 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGY 287
             +  PL  G              + R+ +            +T F   PT    L +  
Sbjct: 298 YVVYGPLLYGCATLVFEGTPAYPNYSRYWDII------DEHKVTQFYVAPTALRLLKRAG 351

Query: 288 EAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHR---LLERYGMTEFVMAI 344
           ++        S      LR +      +   V + +    G     +++ Y  TE    +
Sbjct: 352 DSYIENHSLKS------LRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHL 405

Query: 345 SNPLRGA---RKAGTVGNPLPGVQVKIAEDESGSDAAGV---GEICVKS--PSLFKEYWK 396
             PL G     K G+   P  G+   + +  +G +       G + VK+  PS  +  WK
Sbjct: 406 VTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWK 465

Query: 397 LPKVTKDSFTA--DGFFKTGDTGKQDEDGYYIILGRK 431
                 D++     G++ TGD   +D+DGY  ILGR 
Sbjct: 466 NHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRV 502

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  198 bits (503), Expect = 2e-58
 Identities = 84/438 (19%), Positives = 166/438 (37%), Gaps = 58/438 (13%)

Query: 16  DSVAIRA----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI 71
               +      +    +Y ++   A R+   L +  +                   G R+
Sbjct: 26  RKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGV-----------------GDRV 68

Query: 72  GIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131
             +    F  +         G +           E+ ++++ ++  ++L   +   +++ 
Sbjct: 69  ATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128

Query: 132 VASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGE--DPALIVYTSGTTGKPKGVV 189
           +  +       +            ++++  E+ D  R        + YT+GTTG PKGVV
Sbjct: 129 IRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVV 188

Query: 190 HTHKSI--DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFS 247
           ++H+++   +    L +    +  D  L  +P+ HV+       A L     V   P+  
Sbjct: 189 YSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLD 248

Query: 248 VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307
              + + +            E +T   GVPT++  L    E+    L        K LR 
Sbjct: 249 PASLVELFDG----------EGVTFTAGVPTVWLALADYLESTGHRL--------KTLRR 290

Query: 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISN-----------PLRGARKAGT 356
           ++ G SA P  ++ ++E + G  + + YG+TE    +                       
Sbjct: 291 LVVGGSAAPRSLIARFERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAK 349

Query: 357 VGNPLPGVQVKIAEDESGS---DAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKT 413
            G P+P V++++A++E      D   +GE+ +K P +   Y+   + T+ + T DGFF+T
Sbjct: 350 TGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 409

Query: 414 GDTGKQDEDGYYIILGRK 431
           GD    DE+GY  I  R 
Sbjct: 410 GDIAVWDEEGYVEIKDRL 427

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  186 bits (472), Expect = 5e-54
 Identities = 92/450 (20%), Positives = 168/450 (37%), Gaps = 55/450 (12%)

Query: 2   EVFKAAYKKGSMARDSVAIR--ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNEN 59
           E    A K+ ++   ++A      + + +Y +    ++R++  +    L T         
Sbjct: 21  EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNT--------- 71

Query: 60  SAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMV 119
                     RI + ++ S +F   VLG  F G    P    Y E ELL+ M+ S  ++V
Sbjct: 72  --------NHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 123

Query: 120 LSTEDYREVLQNVASK--SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQ---------- 167
             ++   + + NV  K     K  ++    +     +++    +    G           
Sbjct: 124 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESF 183

Query: 168 -RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHV 223
            R +  ALI+ +SG+TG PKGV   H++   +     +     +       L  +P HH 
Sbjct: 184 DRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHG 243

Query: 224 HGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL 283
            G+F   L  L  G  V  M +F      +  ++    +             VPT+++  
Sbjct: 244 FGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQS----------ALLVPTLFSFF 292

Query: 284 IQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEFVMA 343
            +       +L       +    +   G+           +      + + YG+TE   A
Sbjct: 293 AKSTLIDKYDL-------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA 345

Query: 344 ISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAA--GVGEICVKSPSLFKEYWKLPKVT 401
           I     G  K G VG  +P  + K+ + ++G        GE+CV+ P +   Y   P+ T
Sbjct: 346 ILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEAT 405

Query: 402 KDSFTADGFFKTGDTGKQDEDGYYIILGRK 431
                 DG+  +GD    DED ++ I+ R 
Sbjct: 406 NALIDKDGWLHSGDIAYWDEDEHFFIVDRL 435

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  164 bits (416), Expect = 4e-46
 Identities = 76/423 (17%), Positives = 145/423 (34%), Gaps = 54/423 (12%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           ++VAI  + +  +Y +L   A +++ +     +                      +GI+ 
Sbjct: 38  NNVAIVCENEQLTYHELNVKANQLARIFIEKGIGK-----------------DTLVGIMM 80

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
           + S +   G+L    +G   VP+ + YP+  + +++ DS   M+L+ +    ++ N+   
Sbjct: 81  EKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-- 138

Query: 136 SGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI 195
                        +  E T+  +         +  D A ++YTSGTTG PKG +  HK I
Sbjct: 139 -------FNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGI 191

Query: 196 DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRW 255
                    +   T  D+      +     ++   +A L   +    +            
Sbjct: 192 SNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILK----------- 240

Query: 256 RESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315
                +N     E       +  +              + +          L+  GS+  
Sbjct: 241 ---DTINDFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQ-------TLITAGSATS 290

Query: 316 PLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGS 375
           P  V +  E +T          T               +  +G P+   Q+ I ++    
Sbjct: 291 PSLVNKWKEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQL 350

Query: 376 DAAG-VGEICVKSPSLFKEYWKLPKVTKDSF------TADGFFKTGDTGKQDEDGYYIIL 428
            + G  GE+C+    L + YWK P++T   F        +  +KTGD  +   DG    L
Sbjct: 351 KSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYL 410

Query: 429 GRK 431
           GR 
Sbjct: 411 GRI 413

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  146 bits (369), Expect = 2e-39
 Identities = 74/425 (17%), Positives = 145/425 (34%), Gaps = 44/425 (10%)

Query: 16  DSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75
           D +AI      +SY +L + A R+++      ++                    R+ +  
Sbjct: 40  DRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQ-----------------KDRVVVQL 82

Query: 76  KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASK 135
               EF   +   +  G + V    S+  SE+ +    ++ +  +  + Y        ++
Sbjct: 83  PNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLAR 142

Query: 136 SGAKFSLIPPVPNVSSETTVFD-----QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVH 190
                        V+ E   F       ++  K+   +  D A +  + G+TG  K +  
Sbjct: 143 QVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPR 202

Query: 191 THKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALL-APLYAGATVEFMPKFSVR 249
           TH      ++   E      +  +L  LP+ H + L +  +   LYAG  V   P  S  
Sbjct: 203 THDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPD 262

Query: 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309
             +                            T L+     +  +  ++       L+++ 
Sbjct: 263 DAFPLIEREKV------------------TITALVPPLAMVWMDAASSRRDDLSSLQVLQ 304

Query: 310 CGSSALPLPVMQQWETITGHRLLERYGMTEFVMA-ISNPLRGARKAGTVGNPLPGVQVKI 368
            G +       ++ + + G  L + +GM E ++              T G P+       
Sbjct: 305 VGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESR 364

Query: 369 AEDESGSDAAG--VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYI 426
             D+   D      G +  + P   + Y+K  +    SFT DGF++TGD  +   DGY +
Sbjct: 365 VWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIV 424

Query: 427 ILGRK 431
           + GR 
Sbjct: 425 VEGRA 429

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  135 bits (339), Expect = 2e-35
 Identities = 82/421 (19%), Positives = 155/421 (36%), Gaps = 41/421 (9%)

Query: 15  RDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIV 74
             ++A+ A     ++ +L +    +++ L ++ L+                    R+ +V
Sbjct: 18  HCALAVPARGLRLTHAELRARVEAVAARLHADGLRP-----------------QQRVAVV 60

Query: 75  AKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVAS 134
           A  S + V  +L     G +   L      +EL  ++   +++  +     +       S
Sbjct: 61  APNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS 120

Query: 135 KSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKS 194
            SGA+   I  + ++  +   +      +   +    PA I YTSGTTG PK  +   ++
Sbjct: 121 GSGAR---IIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRA 177

Query: 195 IDAQVQMLTEA--WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIW 252
            +++V  ++      +   +  L  +PL+HV G F  L+A L    T   + +F      
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL 237

Query: 253 QRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312
           Q  ++          E +T+    PT    L        + L+  S      LR +    
Sbjct: 238 QLVQQ----------EQVTSLFATPTHLDALAAAAAHAGSSLKLDS------LRHVTFAG 281

Query: 313 SALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKI--AE 370
           + +P  V++          +  YG TE + ++             G       V+I    
Sbjct: 282 ATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGV 341

Query: 371 DESGSDAAGVGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGR 430
           DE  ++      I   S S F  Y   P+ T +    DG+++T D      +G   ILGR
Sbjct: 342 DEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGR 400

Query: 431 K 431
            
Sbjct: 401 V 401

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	435
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	88.74

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=3e-61  Score=486.64  Aligned_cols=398  Identities=20%  Similarity=0.268  Sum_probs=320.1

Q ss_pred             HHHHHhcccCCCeeEEEeC------CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCC
Q 013869            5 KAAYKKGSMARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS   78 (435)
Q Consensus         5 ~~~~~~~~~~p~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~   78 (435)
                      ++|+++++.+||++|++..      .+++||+||.++++++|++|++                 +|+++||+|+++++|+
T Consensus        76 n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~-----------------~Gv~~Gd~V~i~~~n~  138 (643)
T d1pg4a_          76 NCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-----------------LGIKKGDVVAIYMPMV  138 (643)
T ss_dssp             HHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECCSS
T ss_pred             HHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEecccc
Confidence            4566888889999999953      2579999999999999999999                 5999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhh---------HHHHHHHHhcc--C--CccccCCC
Q 013869           79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKS--G--AKFSLIPP  145 (435)
Q Consensus        79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~--~--~~~~~~~~  145 (435)
                      +++++++|||+++|++++|+++.++.+++.+++++++++++|++++.         ...+.......  .  ..+..+..
T Consensus       139 ~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~  218 (643)
T d1pg4a_         139 PEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKR  218 (643)
T ss_dssp             HHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECS
T ss_pred             hHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEecc
Confidence            99999999999999999999999999999999999999999997642         12222222110  0  11111111


Q ss_pred             CCCCCCcccc---------ccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHH-HHHhccCCCCCeeE
Q 013869          146 VPNVSSETTV---------FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM-LTEAWEYTSADQFL  215 (435)
Q Consensus       146 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~l  215 (435)
                      ..........         ............+++++++|+|||||||.||||+++|++++..... ....+++.++|+++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~  298 (643)
T d1pg4a_         219 TGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYW  298 (643)
T ss_dssp             SCCCCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred             CCcccccccccchhhhhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEE
Confidence            1111100000         0011112233456789999999999999999999999997655444 45567899999999


Q ss_pred             EeecchhhhHHHHHHHHHHHcCCEEEEcCC----cchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhcccc
Q 013869          216 HCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD  291 (435)
Q Consensus       216 ~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  291 (435)
                      +.+|++|.+++...++++|..|+++++.+.    +++..+++.          ++++++|+++++|++++.|++....  
T Consensus       299 ~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~l~~l~~~~~~--  366 (643)
T d1pg4a_         299 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV----------VDKHQVNILYTAPTAIRALMAEGDK--  366 (643)
T ss_dssp             ECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHH----------HHHHTCSEEEECHHHHHHHHTTGGG--
T ss_pred             EeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHH----------HHHHCCcEEEehHHHHHHHHhCcch--
Confidence            999999999987778899999999999764    367778887          6669999999999999999876432  


Q ss_pred             HHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhC---CcccccccCccccchhccCCC--CCCCCCccceecCCCeE
Q 013869          292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLR--GARKAGTVGNPLPGVQV  366 (435)
Q Consensus       292 ~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~~--~~~~~~~~G~p~~~~~~  366 (435)
                          .....++++||.++++|+++++++++.+.+.++   +++++.||+||+|++++....  ...+.+++|+|++|+++
T Consensus       367 ----~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v  442 (643)
T d1pg4a_         367 ----AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQP  442 (643)
T ss_dssp             ----GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCE
T ss_pred             ----hccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccCCCEE
Confidence                123457899999999999999999999999984   679999999999876654332  34567899999999999


Q ss_pred             EEecCCCCCCCCc-cceEEEec--CCccccccCCchhccccc--ccCCccccCceEEEcCCccEEEecccccCC
Q 013869          367 KIAEDESGSDAAG-VGEICVKS--PSLFKEYWKLPKVTKDSF--TADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       367 ~i~d~~~~~~~~~-~Gel~v~~--~~~~~gy~~~~~~~~~~~--~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +|+|++|+.++.+ .|||+++|  |+++.||+++++.+.+.+  ..+|||+|||+|++|+||+|+++||+||+|
T Consensus       443 ~ivd~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i  516 (643)
T d1pg4a_         443 ALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVL  516 (643)
T ss_dssp             EEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEE
T ss_pred             EEECCCCCCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEE
Confidence            9999999988777 69999999  568899999998887765  347899999999999999999999999986

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2e-59  Score=465.97  Aligned_cols=398  Identities=20%  Similarity=0.297  Sum_probs=327.6

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCC----cccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeC
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQ----KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~----~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~   76 (435)
                      +|++++|.++|+++||++|+++..    +++||+||++++.++|++|.+.                 |+++||+|+|+++
T Consensus        11 ~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~-----------------Gv~~gd~V~i~~~   73 (534)
T d1v25a_          11 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRAL-----------------GVGVGDRVATLGF   73 (534)
T ss_dssp             CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECC
T ss_pred             CCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHC-----------------CcCCCCEEEEEeC
Confidence            579999999999999999999732    4699999999999999999994                 9999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCcccc-
Q 013869           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTV-  155 (435)
Q Consensus        77 ~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  155 (435)
                      |++++++++|||+++|++++|+++.++.+++.++++.++++.++++....................+............ 
T Consensus        74 n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (534)
T d1v25a_          74 NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAY  153 (534)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEH
T ss_pred             CCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecccccccccc
Confidence            9999999999999999999999999999999999999999999999999988887766544322222111111111111 


Q ss_pred             -ccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHH--hccCCCCCeeEEeecchhhhHHHHHHHH
Q 013869          156 -FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE--AWEYTSADQFLHCLPLHHVHGLFNALLA  232 (435)
Q Consensus       156 -~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~--~~~~~~~~~~l~~~pl~~~~g~~~~~~~  232 (435)
                       .............++++++++|||||||.||+|.++|.+++........  .......++++..+|++|..++...+. 
T Consensus       154 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~-  232 (534)
T d1v25a_         154 EEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYA-  232 (534)
T ss_dssp             HHHCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHH-
T ss_pred             cccccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccce-
Confidence             1111122234566789999999999999999999999999876655433  335678899999999999999876444 


Q ss_pred             HHHcCCEE-EEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEec
Q 013869          233 PLYAGATV-EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCG  311 (435)
Q Consensus       233 ~l~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~  311 (435)
                      ++..|+++ .+.+.+++...+..          +.++++|++.++|.++..+++..        ......+++||.+++|
T Consensus       233 ~~~~g~~~v~~~~~~~~~~~~~~----------~~~~~vt~~~~~p~~~~~~~~~~--------~~~~~~~~~lr~~~~g  294 (534)
T d1v25a_         233 ATLVGAKQVLPGPRLDPASLVEL----------FDGEGVTFTAGVPTVWLALADYL--------ESTGHRLKTLRRLVVG  294 (534)
T ss_dssp             HHHHTCEEEECTTCCSHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHH--------HHHTCCCSSCCEEEEC
T ss_pred             eeeecceeeeccccccccccchh----------hhhccccccccCchhhhhhhhhh--------ccccccccceeEEEEe
Confidence            45555544 44566788888887          56689999999999999998752        3345678999999999


Q ss_pred             CCCCCHHHHHHHHHHhCCcccccccCccccchhccCCCCC-----------CCCCccceecCCCeEEEecCCCCCCCC--
Q 013869          312 SSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPLRGA-----------RKAGTVGNPLPGVQVKIAEDESGSDAA--  378 (435)
Q Consensus       312 G~~l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~-----------~~~~~~G~p~~~~~~~i~d~~~~~~~~--  378 (435)
                      |++++....+.|++ ++.++++.||+||++.+++......           ...+++|+|++|++++|+|++++..+.  
T Consensus       295 G~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~  373 (534)
T d1v25a_         295 GSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDG  373 (534)
T ss_dssp             SSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSS
T ss_pred             cCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEECCCCCCCCCCC
Confidence            99999999998886 4889999999999987766432211           234689999999999999999988654  


Q ss_pred             c-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          379 G-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       379 ~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      + .|||+++|++++.||+++++.+.+.|..+|||+|||+|++++||.+++.||++|+|
T Consensus       374 ~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i  431 (534)
T d1v25a_         374 KALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLI  431 (534)
T ss_dssp             CCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEE
T ss_pred             CeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCccEEEecccccEE
Confidence            3 79999999999999999999999999999999999999999999999999999986

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-59  Score=472.20  Aligned_cols=400  Identities=20%  Similarity=0.308  Sum_probs=319.6

Q ss_pred             HHHHHHhcccCCCeeEEEeC------CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCC
Q 013869            4 FKAAYKKGSMARDSVAIRAD------QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP   77 (435)
Q Consensus         4 ~~~~~~~~~~~p~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~   77 (435)
                      +++|++||+++||++|++..      .+++||+||.++++++|++|++.                +|+++||+|+|+++|
T Consensus        62 ~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~----------------~Gv~~Gd~V~i~~~n  125 (640)
T d1ry2a_          62 YNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS----------------MGVRKGDTVAVYMPM  125 (640)
T ss_dssp             HHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT----------------SCCCTTCEEEECCCS
T ss_pred             HHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHh----------------cCCCCCCEEEEEeCC
Confidence            56788999999999999953      36899999999999999999742                599999999999999


Q ss_pred             CHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhh---------HHHHHHHHhccCCcc--ccCCCC
Q 013869           78 SFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSGAKF--SLIPPV  146 (435)
Q Consensus        78 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~--~~~~~~  146 (435)
                      ++++++++|||+++|++++|+++.++.+++.++++.+++++++++...         ...+...........  ......
T Consensus       126 ~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (640)
T d1ry2a_         126 VPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKT  205 (640)
T ss_dssp             SHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSS
T ss_pred             CHHHHHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccc
Confidence            999999999999999999999999999999999999999999998643         233333322221110  000000


Q ss_pred             CC--CCCcc--cc------ccchhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHH-HhccCCCCCeeE
Q 013869          147 PN--VSSET--TV------FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT-EAWEYTSADQFL  215 (435)
Q Consensus       147 ~~--~~~~~--~~------~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~~l  215 (435)
                      ..  .....  ..      .............++++++|+|||||||.||||+++|++++.+..... ....+.++|+++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l  285 (640)
T d1ry2a_         206 NNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFF  285 (640)
T ss_dssp             CCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEE
T ss_pred             ccccccccccccccccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCccccee
Confidence            00  00000  00      000111223345678999999999999999999999999777655544 466889999999


Q ss_pred             EeecchhhhHHHHHHHHHHHcCCEEEEcCCc----chhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhcccc
Q 013869          216 HCLPLHHVHGLFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMD  291 (435)
Q Consensus       216 ~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  291 (435)
                      +.+|++|..+....++.++..|+++++.+..    ++..+++.          ++++++|++.++|++++.|.+..... 
T Consensus       286 ~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~~-  354 (640)
T d1ry2a_         286 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI----------IDEHKVTQFYVAPTALRLLKRAGDSY-  354 (640)
T ss_dssp             ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHH----------HHHTTCSEEEECHHHHHHHTTSCTTS-
T ss_pred             eccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHH----------HHHhCccEEEcChHHHHHHHhccccc-
Confidence            9999999999877788999999999988754    67778887          66799999999999999987753321 


Q ss_pred             HHHHHHhhhhccccEEEEecCCCCCHHHHHHHHHHhC---CcccccccCccccchhccCCC---CCCCCCccceecCCCe
Q 013869          292 TELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEFVMAISNPLR---GARKAGTVGNPLPGVQ  365 (435)
Q Consensus       292 ~~~~~~~~~~l~~lr~i~~~G~~l~~~l~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~~---~~~~~~~~G~p~~~~~  365 (435)
                           ....++++||.+++||+++++++.+.|.+.++   .++++.||+||++..+.....   ...+.+++|+|++|++
T Consensus       355 -----~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~  429 (640)
T d1ry2a_         355 -----IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGID  429 (640)
T ss_dssp             -----SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCC
T ss_pred             -----cccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCce
Confidence                 23457899999999999999999999999985   468999999999876654332   2356789999999999


Q ss_pred             EEEecCCCCCC--CCc-cceEEEec--CCccccccCCchhccccc--ccCCccccCceEEEcCCccEEEecccccCC
Q 013869          366 VKIAEDESGSD--AAG-VGEICVKS--PSLFKEYWKLPKVTKDSF--TADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       366 ~~i~d~~~~~~--~~~-~Gel~v~~--~~~~~gy~~~~~~~~~~~--~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++|+|+++...  +.+ .|||++++  |+++.||+++++.+.+.|  +.+|||+|||+|++|+||+|+|.||+||+|
T Consensus       430 ~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~I  506 (640)
T d1ry2a_         430 AVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVV  506 (640)
T ss_dssp             EEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCB
T ss_pred             EEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEE
Confidence            99999876553  223 69999998  689999999999998887  346999999999999999999999999987

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=2.4e-58  Score=458.70  Aligned_cols=398  Identities=22%  Similarity=0.313  Sum_probs=320.5

Q ss_pred             hHHHHHHHhcccC---CCeeEEEeC--CcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeC
Q 013869            2 EVFKAAYKKGSMA---RDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK   76 (435)
Q Consensus         2 ~i~~~~~~~~~~~---p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~   76 (435)
                      |+.+.|.+.++++   |+++|+++.  ++++||+||++++.++|++|++                 +|+++||+|+|+++
T Consensus        18 t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~-----------------~Gi~~Gd~Vai~~~   80 (541)
T d1lcia_          18 TAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-----------------YGLNTNHRIVVCSE   80 (541)
T ss_dssp             CHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECS
T ss_pred             CHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHH-----------------cCcCCCCEEEEEeC
Confidence            4667777777665   888899874  5689999999999999999999                 59999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCcccc--CCCCCCCCCccc
Q 013869           77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSL--IPPVPNVSSETT  154 (435)
Q Consensus        77 ~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  154 (435)
                      |+++++++++||+++|++++|+++.++.+++.++|+.++++++|++++..+.+.......+.....  +...........
T Consensus        81 ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (541)
T d1lcia_          81 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQS  160 (541)
T ss_dssp             SCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBEE
T ss_pred             CCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccccccch
Confidence            999999999999999999999999999999999999999999999999988887777665543222  211111111111


Q ss_pred             ccc-----------chhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhc---cCCCCCeeEEeecc
Q 013869          155 VFD-----------QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPL  220 (435)
Q Consensus       155 ~~~-----------~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl  220 (435)
                      ...           .....+.....++++++++|||||||.||+|.++|++++..........   ...+.++++..+|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~  240 (541)
T d1lcia_         161 MYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPF  240 (541)
T ss_dssp             HHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred             hhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccc
Confidence            110           0111122345568899999999999999999999999987766655443   46778999999999


Q ss_pred             hhhhHHHHHHHHHHHcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhh
Q 013869          221 HHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS  300 (435)
Q Consensus       221 ~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~  300 (435)
                      +|..+... .+..+..++.++.....+....+..          +.++++|.+..+|.++..+++...        ....
T Consensus       241 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~t~~~~~p~~~~~~~~~~~--------~~~~  301 (541)
T d1lcia_         241 HHGFGMFT-TLGYLICGFRVVLMYRFEEELFLRS----------LQDYKIQSALLVPTLFSFFAKSTL--------IDKY  301 (541)
T ss_dssp             TSHHHHHH-HHHHHHHTCEEEECSSCCHHHHHHH----------HHHTTCSEEECCHHHHHHHHHCSC--------GGGS
T ss_pred             cccccccc-cccccccccccccccccccchhHHH----------HhhhhccccccCcccccccccccc--------cccc
Confidence            99999864 7788889999999988888888877          555899999999999999987643        2344


Q ss_pred             hccccEEEEecCCCCCHHHHHHHHHHhCC-cccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCC-CCCCCC
Q 013869          301 AAKQLRLMMCGSSALPLPVMQQWETITGH-RLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDE-SGSDAA  378 (435)
Q Consensus       301 ~l~~lr~i~~~G~~l~~~l~~~~~~~~~~-~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-~~~~~~  378 (435)
                      +++++|.+++||++++.++.+.+.+.++. .+++.||+||+++.++.........+++|+|+||++++|+|++ ++.++.
T Consensus       302 ~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~svG~p~~~~~~~i~d~d~~~~~~~  381 (541)
T d1lcia_         302 DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV  381 (541)
T ss_dssp             CCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC---CCCCBEECTTCEEEEECTTTCCBCCT
T ss_pred             ccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcccCCCCccccccCCCEEEEEECCCCcCCCC
Confidence            67899999999999999999999999865 6889999999998877666667778899999999999999954 566665


Q ss_pred             c-cceEEEecCCccccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          379 G-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       379 ~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      + .|||+|+|++++.||+++++.+...+..+|||+|||+|++++||.+++.||.+|+|
T Consensus       382 g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i  439 (541)
T d1lcia_         382 NQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLI  439 (541)
T ss_dssp             TCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CE
T ss_pred             CCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEE
Confidence            5 79999999999999999999999988889999999999999999999999999986

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=4e-57  Score=447.16  Aligned_cols=385  Identities=21%  Similarity=0.371  Sum_probs=315.9

Q ss_pred             ChHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHH
Q 013869            1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE   80 (435)
Q Consensus         1 ~~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~   80 (435)
                      +||.++|.++|+++||++|++++++++||+||.++++++|++|++.                 |+++||+|+++++|+++
T Consensus        23 ~tl~~l~~~~a~~~Pd~~Al~~~~~~~Ty~eL~~~v~~lA~~L~~~-----------------Gv~~gd~Vai~~~n~~~   85 (514)
T d1amua_          23 KTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEK-----------------GIGKDTLVGIMMEKSID   85 (514)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSSHH
T ss_pred             CcHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHHc-----------------CcCCcCEEEEEeCCCHH
Confidence            4799999999999999999999999999999999999999999994                 99999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccchh
Q 013869           81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ  160 (435)
Q Consensus        81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (435)
                      +++++|||+++|++++|+++.++.+++.++++.+++++++++....+.+.......   ...........      ....
T Consensus        86 ~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~  156 (514)
T d1amua_          86 LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNG---QVEIFEEDTIK------IREG  156 (514)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCS---EEEECCCSTTT------TSCC
T ss_pred             HHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccc---ccccccccccc------cccc
Confidence            99999999999999999999999999999999999999999998877654332111   00000000000      0011


Q ss_pred             hhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEE
Q 013869          161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV  240 (435)
Q Consensus       161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~  240 (435)
                      .....+..++++++++|||||||.||++.++|.++..........+.....++++...|++|..++. .++.++..|+++
T Consensus       157 ~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~~~~~  235 (514)
T d1amua_         157 TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW-EMFMALLTGASL  235 (514)
T ss_dssp             SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEE
T ss_pred             ccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceeccccccccc-cccccccccccc
Confidence            1112345678999999999999999999999999999999999999999999999999999999987 588899999999


Q ss_pred             EEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCHHHH
Q 013869          241 EFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVM  320 (435)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~~l~  320 (435)
                      ++.+.....+....+..       +..+.++.+..+|......              ....+++++.++.+|+.+++++.
T Consensus       236 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~G~~~~~~~~  294 (514)
T d1amua_         236 YIILKDTINDFVKFEQY-------INQKEITVITLPPTYVVHL--------------DPERILSIQTLITAGSATSPSLV  294 (514)
T ss_dssp             EECCHHHHTCHHHHHHH-------HHHTTCCEEEECHHHHTTS--------------CTTTCCSCSEEEEESSCCCHHHH
T ss_pred             cccccccccchhhhhhh-------hhhhhcccccceeeecccc--------------cccccccccEEEEecccCCHHHh
Confidence            99876544433333322       5567888888888754322              23467899999999999999998


Q ss_pred             HHHHHHhCCcccccccCccccchhccCCC---CCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEecCCccccccC
Q 013869          321 QQWETITGHRLLERYGMTEFVMAISNPLR---GARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWK  396 (435)
Q Consensus       321 ~~~~~~~~~~l~~~YG~tE~~~~~~~~~~---~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~~gy~~  396 (435)
                      +++.+  +..+++.||+||++.+++....   ......+.|.+.+++++.+.|++++..+.+ .|||+|+|+.+++||++
T Consensus       295 ~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~~GEl~v~~~~~~~gY~~  372 (514)
T d1amua_         295 NKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWK  372 (514)
T ss_dssp             HHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETT
T ss_pred             hhhcc--ceeEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeecccceecCCCCeeEEEEccCcccccccc
Confidence            88766  6789999999999887663222   234556889999999999999999988777 79999999999999999


Q ss_pred             Cchhccccc------ccCCccccCceEEEcCCccEEEecccccCC
Q 013869          397 LPKVTKDSF------TADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       397 ~~~~~~~~~------~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      +++.+.+.|      +.+|||+|||+|++|+||+|++.||++|+|
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i  417 (514)
T d1amua_         373 RPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQV  417 (514)
T ss_dssp             CHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEE
T ss_pred             cccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEE
Confidence            999888876      347899999999999999999999999986

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=9.3e-55  Score=432.22  Aligned_cols=398  Identities=20%  Similarity=0.275  Sum_probs=325.7

Q ss_pred             hHHHHHHHhcccCCCeeEEEeCCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCHHH
Q 013869            2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF   81 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~~~   81 (435)
                      |+.++|.++|+++||++|+++.++++||+||.++++++|++|++                 +|+++||+|+|+++|++++
T Consensus        26 tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~el~~~v~~~A~~L~~-----------------~Gv~~gd~V~i~~~n~~~~   88 (536)
T d1mdba_          26 TFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQK-----------------LGIQQKDRVVVQLPNIKEF   88 (536)
T ss_dssp             CHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEECCCSSHHH
T ss_pred             CHHHHHHHHHHHCCCCeEEEECCEeEcHHHHHHHHHHHHHHHHH-----------------cCcCCcCEEEEEeCCCHHH
Confidence            68999999999999999999999999999999999999999999                 5999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHH-----HHHHHhccCCccccCCCCCCCCCccccc
Q 013869           82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREV-----LQNVASKSGAKFSLIPPVPNVSSETTVF  156 (435)
Q Consensus        82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (435)
                      ++++|||+++|++++|+++.++.+++.++++.++++++++++.....     ..............+..... .......
T Consensus        89 ~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  167 (536)
T d1mdba_          89 FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA-EEFLPLE  167 (536)
T ss_dssp             HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC-TTSEEGG
T ss_pred             HHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeecc-ccccchh
Confidence            99999999999999999999999999999999999999998633321     11111111110000000000 0000010


Q ss_pred             c-chhhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhccCCCCCeeEEeecchhhhHHHHH-HHHHH
Q 013869          157 D-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA-LLAPL  234 (435)
Q Consensus       157 ~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~-~~~~l  234 (435)
                      + ...........++|+++|+|||||||.||+|.+||+++..++......+++.+.+++++..|++|..++... +...+
T Consensus       168 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~  247 (536)
T d1mdba_         168 DLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVL  247 (536)
T ss_dssp             GCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHH
T ss_pred             hcccCCcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeeccccccc
Confidence            1 111122345678999999999999999999999999999999999999999999999999999999987543 44445


Q ss_pred             HcCCEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCC
Q 013869          235 YAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSA  314 (435)
Q Consensus       235 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~  314 (435)
                      ..|.+++..+.+++..++..          +.+++++.+..+|..+..+...        .......+++++.+++||++
T Consensus       248 ~~g~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~gG~~  309 (536)
T d1mdba_         248 YAGGRVVLSPSPSPDDAFPL----------IEREKVTITALVPPLAMVWMDA--------ASSRRDDLSSLQVLQVGGAK  309 (536)
T ss_dssp             HTTCEEEECSSSSHHHHHHH----------HHHHTCSEEEECHHHHHHHHHH--------HHHCCCCCTTCCEEEEESSC
T ss_pred             cccccccccCCCCHHHHHHH----------Hhhhccccccccchhhhhhhhh--------ccccccccCcceeEEEeccc
Confidence            55788888888899888888          5668999999999999998774        34455678999999999999


Q ss_pred             CCHHHHHHHHHHhCCcccccccCccccchhcc-CCCCCCCCCccceecC-CCeEEEecCCCCCCCCc-cceEEEecCCcc
Q 013869          315 LPLPVMQQWETITGHRLLERYGMTEFVMAISN-PLRGARKAGTVGNPLP-GVQVKIAEDESGSDAAG-VGEICVKSPSLF  391 (435)
Q Consensus       315 l~~~l~~~~~~~~~~~l~~~YG~tE~~~~~~~-~~~~~~~~~~~G~p~~-~~~~~i~d~~~~~~~~~-~Gel~v~~~~~~  391 (435)
                      +++.+.+.+.+.++......|+.+|.+..+.. .........++|.|++ +..+.+.+++++.++.+ .|||+++|+.++
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~  389 (536)
T d1mdba_         310 FSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTI  389 (536)
T ss_dssp             CCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSC
T ss_pred             cccccccchhhccCceeeeccccccccccccccccccccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCccc
Confidence            99999999999999999999999987654443 3323345568899986 55677777778777666 799999999999


Q ss_pred             ccccCCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          392 KEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       392 ~gy~~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      .||+++++.+...++++|||+|||+|++++||+|++.||.||+|
T Consensus       390 ~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i  433 (536)
T d1mdba_         390 RGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQI  433 (536)
T ss_dssp             SSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCE
T ss_pred             cccccccccccccccccCccccCccccccCCCceecCCCcceEE
Confidence            99999999999999999999999999999999999999999975

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=8.5e-51  Score=399.83  Aligned_cols=397  Identities=21%  Similarity=0.262  Sum_probs=318.7

Q ss_pred             hHHHHHHHhcccCCCeeEEEe--CCcccCHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEeCCCH
Q 013869            2 EVFKAAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF   79 (435)
Q Consensus         2 ~i~~~~~~~~~~~p~~~al~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~g~~~g~~V~i~~~~~~   79 (435)
                      ||+++|.++|+++||++|+++  +++++||+||.+++.++|++|++.                 |+++||+|+|+++|++
T Consensus         3 ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~-----------------Gv~~gd~V~i~~~n~~   65 (503)
T d3cw9a1           3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHAD-----------------GLRPQQRVAVVAPNSA   65 (503)
T ss_dssp             CHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHT-----------------TCCTTCEEEEECCSCH
T ss_pred             CHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHc-----------------CcCCCCEEEEEeCCCH
Confidence            789999999999999999997  456999999999999999999994                 9999999999999999


Q ss_pred             HHHHHHHHHHHhCCeEEeCCCCCCHHHHHHHHhcCCccEEEechhhHHHHHHHHhccCCccccCCCCCCCCCccccccch
Q 013869           80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQS  159 (435)
Q Consensus        80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (435)
                      ++++++|||+++|++++|+++.++.+++.++++++++++++++.................+..+.....   ........
T Consensus        66 ~~~~~~lA~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~  142 (503)
T d3cw9a1          66 DVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVR---DGEPYSYG  142 (503)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHTTCCCEEEEHHHHEE---TTEECCCS
T ss_pred             HHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhhccccccccchhhhh---hhcccccC
Confidence            999999999999999999999999999999999999999999876543322222222222221110000   00000111


Q ss_pred             hhhhccCCCCCCcEEEEecCCCCCCCceEEeehHHHHHHHHHHHHhcc--CCCCCeeEEeecchhhhHHHHHHHHHHHcC
Q 013869          160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWE--YTSADQFLHCLPLHHVHGLFNALLAPLYAG  237 (435)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G  237 (435)
                      .........++++++++|||||||.||++.++|+++...+......+.  ....++++..+|++|..+.....+.+...+
T Consensus       143 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  222 (503)
T d3cw9a1         143 PPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALD  222 (503)
T ss_dssp             CCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTT
T ss_pred             CccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccccc
Confidence            112233567789999999999999999999999999999988877654  456689999999988888877788888999


Q ss_pred             CEEEEcCCcchhHHHHHHHhhcCCCCCccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCCCH
Q 013869          238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL  317 (435)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l~~  317 (435)
                      +++++.+.+++......          +.+++++++..+|..+..+......      ......+++||.+++||+++++
T Consensus       223 ~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Lr~i~~gG~~~~~  286 (503)
T d3cw9a1         223 GTYVVVEEFRPVDALQL----------VQQEQVTSLFATPTHLDALAAAAAH------AGSSLKLDSLRHVTFAGATMPD  286 (503)
T ss_dssp             CEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHHHHH------TCTTCCCTTCCEEEECSSCCCH
T ss_pred             cccccccccChHHhhhh----------hhhceeecccccccccccccccccc------ccccccccceEEEEeccccccc
Confidence            99999999999998888          5558999999999999988765322      1233457899999999999999


Q ss_pred             HHHHHHHHHhCCcccccccCccccchhccCCCCCCCCCccceecCCCeEEEecCCCCCCCCc-cceEEEe-cCCcccccc
Q 013869          318 PVMQQWETITGHRLLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVK-SPSLFKEYW  395 (435)
Q Consensus       318 ~l~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-~Gel~v~-~~~~~~gy~  395 (435)
                      ++...+...++..+.+.||.+|++..+...........+.+.+.+.....+.+..++..+.+ .|++.+. +.....+|+
T Consensus       287 ~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~  366 (503)
T d3cw9a1         287 AVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYL  366 (503)
T ss_dssp             HHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBT
T ss_pred             cccccccccccccccccccccccceeeeeccccccccccccccccceeeeeecccCcccCCCcccccccccccccccccc
Confidence            99999999999999999999999877765554444445555555555555666666665555 6876555 466677888


Q ss_pred             CCchhcccccccCCccccCceEEEcCCccEEEecccccCC
Q 013869          396 KLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRKGIYF  435 (435)
Q Consensus       396 ~~~~~~~~~~~~~g~~~TGD~g~~~~dG~l~~~gR~~d~i  435 (435)
                      ++++.+.+.| .+|||+|||+|++++||+|+++||+||+|
T Consensus       367 ~~~~~t~~~~-~~g~~~TgD~g~~~~dG~l~~~GR~~d~i  405 (503)
T d3cw9a1         367 NQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMI  405 (503)
T ss_dssp             TCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSCCE
T ss_pred             CChhhhHHHh-cCCceecccccccccCCeEEeCCCcCCeE
Confidence            9988888888 58999999999999999999999999986

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=88.74  E-value=1.3  Score=40.47  Aligned_cols=104  Identities=13%  Similarity=0.094  Sum_probs=74.0

Q ss_pred             EEeehHHHHHHHHHHHHhc---cCCCCCeeEEeecchhhhHHHHHHHHHHHcCCEEEEcCC-cchhHHHHHHHhhcCCCC
Q 013869          188 VVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNG  263 (435)
Q Consensus       188 v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~  263 (435)
                      ..+|++.+...+..++..+   ++.++|++..+++-+.-.  ...+++++..|+..+.++. ++.+.....         
T Consensus        46 ~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~--~v~~lA~~~~G~i~vpl~~~~~~~~l~~~---------  114 (541)
T d1lcia_          46 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF--FMPVLGALFIGVAVAPANDIYNERELLNS---------  114 (541)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSST--HHHHHHHHHHTCEEEECCTTCCHHHHHHH---------
T ss_pred             eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHH--HHHHHHHHHhCeEEEecCCCCCHHHHHHH---------
Confidence            4689999988888776554   789999998888775433  3468899999999988875 444555444         


Q ss_pred             CccccccceeccccHHHHHHHhhhccccHHHHHHhhhhccccEEEEecCCCC
Q 013869          264 NRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL  315 (435)
Q Consensus       264 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~l~~lr~i~~~G~~l  315 (435)
                       ++..+++.++.....+..+.+.            ...++.++.++......
T Consensus       115 -l~~~~~~~vi~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~  153 (541)
T d1lcia_         115 -MNISQPTVVFVSKKGLQKILNV------------QKKLPIIQKIIIMDSKT  153 (541)
T ss_dssp             -HHHHCCSEEEECGGGHHHHHHH------------HHHCTTCCEEEETTCSS
T ss_pred             -HHhccceEEeeeccccccchhc------------cccccccceeeeecCCc
Confidence             4557999999988887776553            12456677777655443