Citrus Sinensis ID: 013882

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
MLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGYKRTRHPRLASQQRSSENGNEYQTGSGLKRKKDPESVDQDGPEKRQSISPQKQDSLSPDHLAPSSVRSGTGSNVEPVIPDKRVLNQEIAEGGDVSNSSVITSVTSEVGSCEDVGNESVAGSSEGNNGSVEGSNNPVSSQSDCCDADSQSLLENRHLDGNGAFQDRVHEELELNAGLGSVLQSTSGIDSETVVQKPVMRLSLTSTA
ccHHHHHHHHccccccccEEccccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccHHHHHHcEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccEEEEEEEEEcccccccccccEEccHHHHHHHHHHHHHHccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccHHHcccccccccccccccccccccccccEEEEEccccc
cHHHHHHHHHHcccccccEEEcccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHcEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccEEEEEEEEEEEcccccccccEEEccccHHHHHHHHHHHHccccccEEEEEEEEHHHcccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccHHccccccccccccccccccccccccccEEEEcccccc
MLVSRFFRVYtmwrwpnpvmlcaideaelgfsvwdprknrrdkthhmpiitpaypcmnssynvstSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERdtygklqchpypheyvdtskpcahcaffmglqrkpgevvqegqqfdirgsVEEFKLSINMYMFWKPGMEICVSHirrkqippyvfpegykrtrhprlasqqrssengneyqtgsglkrkkdpesvdqdgpekrqsispqkqdslspdhlapssvrsgtgsnvepvipdkrvlnqeiaeggdvsnssVITSVTsevgscedvgnesvagssegnngsvegsnnpvssqsdccdadsqsllenrhldgngafqDRVHEELELNAGlgsvlqstsgidsetvvqkpvmrlsltsta
MLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKThhmpiitpaypcmnSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGYKRtrhprlasqqrssengneyqtgsglkrkkdpesvdqdgpekrqsispqkqdslspdhlapssvrsgtgsnvepvipdKRVLNQEIaeggdvsnssvITSVTSEVGSCEDVGNESVAgssegnngsvEGSNNPVSSQSDCCDADSQSLLENRHLDGNGAFQDRVHEELELNAGLGSVLqstsgidsetvvqkpvmrlsltsta
MLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGYKRTRHPRLASQQRSSENGNEYQTGSGLKRKKDPESVDQDGPEKRQSISPQKQDSLSPDHLAPSSVRSGTGSNVEPVIPDKRVLNQEIAEGGDvsnssvitsvtsevgsCEDvgnesvagssegnngsvegsnnpvssqsdccdadsqsLLENRHLDGNGAFQDRVHEELELNAGLGSVLQSTSGIDSETVVQKPVMRLSLTSTA
**VSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGY************************************************************************************************************************************************************************************************************
MLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRK*********QFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVF*********************************************************************************************************************************************************************************************************LSLT***
MLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGYKRTRH******************************************************************NVEPVIPDKRVLNQEIAEGGDVSNSSVITSVTSEVGSCEDVG*******************************DSQSLLENRHLDGNGAFQDRVHEELELNAGLGSVLQSTSGIDSETVVQKPVMRLSLTSTA
MLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPE*********************************************************************************************************************************************************************************************ETVVQKPVMR*******
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MLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGYKRTRHPRLASQQRSSENGNEYQTGSGLKRKKDPESVDQDGPEKRQSISPQKQDSLSPDHLAPSSVRSGTGSNVEPVIPDKRVLNQEIAEGGDVSNSSVITSVTSEVGSCEDVGNESVAGSSEGNNGSVEGSNNPVSSQSDCCDADSQSLLENRHLDGNGAFQDRVHEELELNAGLGSVLQSTSGIDSETVVQKPVMRLSLTSTA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query434 2.2.26 [Sep-21-2011]
Q54J73809 Poly(A) polymerase OS=Dic yes no 0.546 0.292 0.379 2e-42
Q9BWT3736 Poly(A) polymerase gamma yes no 0.559 0.330 0.358 1e-39
Q9NRJ5636 Poly(A) polymerase beta O no no 0.502 0.342 0.394 5e-39
Q9WVP6641 Poly(A) polymerase beta O yes no 0.5 0.338 0.401 6e-39
Q6PCL9739 Poly(A) polymerase gamma no no 0.552 0.324 0.363 9e-39
P51005484 Poly(A) polymerase alpha- N/A no 0.525 0.471 0.373 1e-38
Q61183739 Poly(A) polymerase alpha no no 0.523 0.307 0.383 2e-38
P51003745 Poly(A) polymerase alpha no no 0.497 0.289 0.395 2e-38
P25500739 Poly(A) polymerase alpha no no 0.497 0.292 0.395 3e-38
P51004715 Poly(A) polymerase alpha- N/A no 0.525 0.318 0.373 1e-37
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1 Back     alignment and function desciption
 Score =  174 bits (440), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/253 (37%), Positives = 140/253 (55%), Gaps = 16/253 (6%)

Query: 2   LVSRFFRVYTMWRWPNPVMLCAIDEAE-LGFSVWDPRKNRRDKTHHMPIITPAYPCMNSS 60
           ++ RFF+VY +W+WP P++LC I E   LG  VW+P+   RDK H MPIITPAYP MNS+
Sbjct: 302 IIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPK---RDKAHLMPIITPAYPSMNST 358

Query: 61  YNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADD 120
           YNVS STL++M  +F  G  I  ++E  +  W  L E   FF  Y  Y+++D  + N +D
Sbjct: 359 YNVSKSTLQLMKSEFVRGAEITRKIETGECTWKNLLEKCDFFTRYSFYIEIDCYSMNEED 418

Query: 121 LLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVD----TSKPCAHC-AFFMGLQRK 175
              W+GW+ES+LR L   +E     K    PYP  + +     + P   C +FFMGL   
Sbjct: 419 SRKWEGWIESKLRFLISNLESTPKMKFAV-PYPKGFTNNLHKANNPDQICTSFFMGLSFN 477

Query: 176 PGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPG---MEICVSHIRRKQIPPYVFPEGYKR 232
                   +  D+  +V EF   I  ++  +P    M+I V +I++KQ+P +V  EG   
Sbjct: 478 FSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIKKKQLPAFVKDEG--- 534

Query: 233 TRHPRLASQQRSS 245
              P   +++RSS
Sbjct: 535 PEEPVKTTKKRSS 547
Polymerase that creates the 3'-poly(A) tail of mRNA's. May acquire specificity through interaction with a cleavage and polyadenylation factor.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2 Back     alignment and function description
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1 Back     alignment and function description
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2 Back     alignment and function description
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1 Back     alignment and function description
>sp|P51005|PAPO2_XENLA Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-b PE=2 SV=1 Back     alignment and function description
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4 Back     alignment and function description
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4 Back     alignment and function description
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3 Back     alignment and function description
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query434
255549812 712 nucleic acid binding protein, putative [ 0.976 0.595 0.691 1e-173
297743180 677 unnamed protein product [Vitis vinifera] 0.947 0.607 0.679 1e-163
225442450 770 PREDICTED: poly(A) polymerase-like [Viti 0.981 0.553 0.608 1e-158
449480779 758 PREDICTED: poly(A) polymerase-like [Cucu 0.965 0.552 0.586 1e-153
449448062 772 PREDICTED: LOW QUALITY PROTEIN: poly(A) 0.965 0.542 0.586 1e-153
147790301 778 hypothetical protein VITISV_011285 [Viti 0.956 0.533 0.594 1e-151
356522230 766 PREDICTED: poly(A) polymerase-like [Glyc 0.949 0.537 0.594 1e-131
357513525 633 Poly(A) polymerase [Medicago truncatula] 0.951 0.652 0.579 1e-128
356528904 790 PREDICTED: poly(A) polymerase-like [Glyc 0.976 0.536 0.573 1e-126
53792977 740 putative poly(A) polymerase [Oryza sativ 0.967 0.567 0.517 1e-125
>gi|255549812|ref|XP_002515957.1| nucleic acid binding protein, putative [Ricinus communis] gi|223544862|gb|EEF46377.1| nucleic acid binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 305/441 (69%), Positives = 350/441 (79%), Gaps = 17/441 (3%)

Query: 1   MLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSS 60
           MLVSRFFRVYT WRWPNPVMLC I+E ELGFS+WDPRKN RD+THHMPIITPAYPCMNSS
Sbjct: 229 MLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSIWDPRKNPRDRTHHMPIITPAYPCMNSS 288

Query: 61  YNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADD 120
           YNVSTSTLRVMM+QFQYGN ICEE+EL K QW+ LFEPYLFFESY+NYLQVDIVA + DD
Sbjct: 289 YNVSTSTLRVMMEQFQYGNKICEEIELIKTQWATLFEPYLFFESYKNYLQVDIVATDVDD 348

Query: 121 LLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRKPGEVV 180
           L AWKGWVESRLRQLTLMI+RDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRK GE++
Sbjct: 349 LRAWKGWVESRLRQLTLMIDRDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRKQGEMI 408

Query: 181 QEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGYKRTRHPRLAS 240
           QEGQQFDIRG+V+EF+ SINMYMFWKPGMEI VSH+RRKQIP YVFP+GY+R RHPR+ +
Sbjct: 409 QEGQQFDIRGTVDEFRNSINMYMFWKPGMEIYVSHVRRKQIPSYVFPDGYRRARHPRVTA 468

Query: 241 QQRSSE----NGNEYQTGS---GLKRKKDPESVD--QDGPEKRQSISPQKQDSLSPDHL- 290
           QQ+S +    + + Y  GS   G KRKKD + +D   D PEKR SISPQ++DS+SPD   
Sbjct: 469 QQQSDKTCCGDSDAYGNGSSERGHKRKKDSDEIDVKNDMPEKRNSISPQRRDSVSPDIFT 528

Query: 291 ----APSSVRSGTGSNVEPVIPDKRVLNQEIAEGGDVSNSSVITSVTSEVGSCEDVGNES 346
                PSS  S        +  DKR    +  +G   SNSS ITS++SE+ SCED+G ES
Sbjct: 529 HKFGGPSSECSAIAEGKGTLQLDKRTFCPDDVDGVCTSNSSGITSLSSEIVSCEDIGTES 588

Query: 347 VAGSSEGNNGSVEGSNNPVSSQSDCCDADSQSLLENRHLDGNGAFQDRVHEELELNAGLG 406
           VAGSSEGNNGS EGSNN VSSQSD  DA+S+SLLEN + DG G  QD + EELE NA + 
Sbjct: 589 VAGSSEGNNGSAEGSNNLVSSQSDSGDAESESLLENAYADG-GVLQDGLQEELEPNAAV- 646

Query: 407 SVLQSTSGIDSETVVQKPVMR 427
            +   T G+ +E  +QKPV+R
Sbjct: 647 EMAPDTLGVSAEA-LQKPVIR 666

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297743180|emb|CBI36047.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225442450|ref|XP_002277939.1| PREDICTED: poly(A) polymerase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449480779|ref|XP_004155993.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449448062|ref|XP_004141785.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) polymerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147790301|emb|CAN69980.1| hypothetical protein VITISV_011285 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356522230|ref|XP_003529750.1| PREDICTED: poly(A) polymerase-like [Glycine max] Back     alignment and taxonomy information
>gi|357513525|ref|XP_003627051.1| Poly(A) polymerase [Medicago truncatula] gi|355521073|gb|AET01527.1| Poly(A) polymerase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356528904|ref|XP_003533037.1| PREDICTED: poly(A) polymerase-like [Glycine max] Back     alignment and taxonomy information
>gi|53792977|dbj|BAD54151.1| putative poly(A) polymerase [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query434
TAIR|locus:2043560800 PAPS2 "poly(A) polymerase 2" [ 0.679 0.368 0.646 1.2e-108
TAIR|locus:2134113765 nPAP "nuclear poly(a) polymera 0.714 0.405 0.628 5.7e-107
TAIR|locus:2030943713 PAPS1 "poly(A) polymerase 1" [ 0.566 0.345 0.609 1e-82
ZFIN|ZDB-GENE-040426-1256744 papolg "poly(A) polymerase gam 0.562 0.327 0.380 5.5e-41
DICTYBASE|DDB_G0288259809 papA "poly(A) polymerase" [Dic 0.594 0.318 0.363 1.7e-39
UNIPROTKB|J9NS30 813 PAPOLG "Uncharacterized protei 0.700 0.373 0.332 4.6e-38
UNIPROTKB|A5D7N5740 PAPOLG "Uncharacterized protei 0.700 0.410 0.325 5.3e-38
RGD|1310337739 Papolg "poly(A) polymerase gam 0.679 0.399 0.349 1.1e-37
UNIPROTKB|F1SQL7741 PAPOLG "Uncharacterized protei 0.695 0.407 0.336 1.1e-37
UNIPROTKB|Q9NRJ5636 PAPOLB "Poly(A) polymerase bet 0.615 0.419 0.347 1.4e-37
TAIR|locus:2043560 PAPS2 "poly(A) polymerase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1028 (366.9 bits), Expect = 1.2e-108, Sum P(2) = 1.2e-108
 Identities = 199/308 (64%), Positives = 234/308 (75%)

Query:     1 MLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSS 60
             MLVSRFFRVYT WRWPNPVMLCAI+E +L F VWDPRKN RD+ H MPIITPAYPCMNSS
Sbjct:   271 MLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHRDRYHLMPIITPAYPCMNSS 330

Query:    61 YNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADD 120
             YNVS STLRVM +QFQ+GNTIC+E+ELNK  WS+LF+ Y+FFE+Y+NYLQVD++AA+A+D
Sbjct:   331 YNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMFFEAYKNYLQVDVLAADAED 390

Query:   121 LLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRKPGEVV 180
             LLAWKGWVESR RQLTL IERDT G L CHP P+EYVDTSK   HCAFFMGLQR  G   
Sbjct:   391 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTSKQFRHCAFFMGLQRADGFGG 450

Query:   181 QEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGYKRTRHPRLAS 240
             QE QQFDIRG+V+EF+  +NMYMFW+PGM++ VSH+RR+Q+P +VFP GYKR+R  R  S
Sbjct:   451 QECQQFDIRGTVDEFRQEVNMYMFWRPGMDVHVSHVRRRQLPSFVFPNGYKRSRQSRHQS 510

Query:   241 QQRSSENGNEYQTGS-------GLKRKKDPESVDQ--DGPEKRQSISPQKQDSLSPDHLA 291
             QQ   E G+E   GS         KRK D E ++   +  EKR S S    D+ SPD  +
Sbjct:   511 QQ-CREPGDE-GVGSLSDSVERYAKRKNDDEIMNSRPEKREKRASCSLHTLDAASPD--S 566

Query:   292 PSSVRSGT 299
                  SGT
Sbjct:   567 SGITTSGT 574
GO:0003723 "RNA binding" evidence=IEA
GO:0004652 "polynucleotide adenylyltransferase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA;IDA
GO:0006351 "transcription, DNA-dependent" evidence=IEA
GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS
GO:0031123 "RNA 3'-end processing" evidence=IEA
GO:0043631 "RNA polyadenylation" evidence=IEA;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0006397 "mRNA processing" evidence=RCA
TAIR|locus:2134113 nPAP "nuclear poly(a) polymerase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030943 PAPS1 "poly(A) polymerase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1256 papolg "poly(A) polymerase gamma" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288259 papA "poly(A) polymerase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|J9NS30 PAPOLG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7N5 PAPOLG "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1310337 Papolg "poly(A) polymerase gamma" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQL7 PAPOLG "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NRJ5 PAPOLB "Poly(A) polymerase beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.7LOW CONFIDENCE prediction!
4th Layer2.7.7.19LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
PTZ00418593 PTZ00418, PTZ00418, Poly(A) polymerase; Provisiona 3e-69
pfam04928349 pfam04928, PAP_central, Poly(A) polymerase central 3e-51
pfam04926141 pfam04926, PAP_RNA-bind, Poly(A) polymerase predic 6e-50
COG5186552 COG5186, PAP1, Poly(A) polymerase [RNA processing 1e-38
>gnl|CDD|240410 PTZ00418, PTZ00418, Poly(A) polymerase; Provisional Back     alignment and domain information 
 Score =  230 bits (587), Expect = 3e-69
 Identities = 87/314 (27%), Positives = 157/314 (50%), Gaps = 32/314 (10%)

Query: 2   LVSRFFRVYTMWRWPNPVMLCAIDEAE-----LGFSVWDPRKNRRDKTHHMPIITPAYPC 56
           L+ +FFRVY++W W NPV+LC I E       + F VWDPR N +D+ H MPIITPA+P 
Sbjct: 301 LIHKFFRVYSIWNWKNPVLLCKIKEVPNIPGLMNFKVWDPRVNPQDRAHLMPIITPAFPS 360

Query: 57  MNSSYNVSTSTLRVMMDQFQYGNTICEEVELN-KAQWSALFEPYLFFESYRNYLQVDIVA 115
           MNS++NV+ +T RV+ ++F+  + I + +E N +  W+ + EP  FF SY+++L + + A
Sbjct: 361 MNSTHNVTYTTKRVITEEFKRAHEIIKYIEKNSENTWTNVLEPLDFFTSYKHFLVIQVYA 420

Query: 116 ANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHC-AFFMGLQR 174
            N      W+GW+ES++R L   +E  T   L+  PYP  +        +  +FF+GL  
Sbjct: 421 TNEHVHNKWEGWIESKIRFLIKKLE--TLNNLKIRPYPKFFKYQDDGWDYASSFFIGLVF 478

Query: 175 KPGEVVQEGQQFDIRGSVEEFKLSINMYM---FWKPGMEICVSHIRRKQIPPYVFPEGYK 231
                V     FD+R ++ +F   IN +     +   ++I + ++++ Q+P +V  +  +
Sbjct: 479 FSK-NVYNNSTFDLRYAIRDFVDIINNWPEMEKYPDQIDINIKYLKKSQLPAFVLSQTPE 537

Query: 232 RTRHPRLASQQRSSENGNEYQTGSGLKRKKDPESVDQDGPEKRQSISPQKQDSLSPDHLA 291
                +  ++  +S      Q+GS                      +     + S   ++
Sbjct: 538 EPVKTKANTKTNTSSATTSGQSGS-------------------SGSTSNSNSNESSPTMS 578

Query: 292 PSSVRSGTGSNVEP 305
            + + + + ++   
Sbjct: 579 STELLNVSSTSTTG 592

Length = 593
>gnl|CDD|203124 pfam04928, PAP_central, Poly(A) polymerase central domain Back     alignment and domain information
>gnl|CDD|218331 pfam04926, PAP_RNA-bind, Poly(A) polymerase predicted RNA binding domain Back     alignment and domain information
>gnl|CDD|227513 COG5186, PAP1, Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 434
KOG2245562 consensus Poly(A) polymerase and related nucleotid 100.0
PTZ00418593 Poly(A) polymerase; Provisional 100.0
COG5186552 PAP1 Poly(A) polymerase [RNA processing and modifi 100.0
PF04926157 PAP_RNA-bind: Poly(A) polymerase predicted RNA bin 100.0
PF04928254 PAP_central: Poly(A) polymerase central domain; In 99.97
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 90.94
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-67  Score=543.14  Aligned_cols=229  Identities=44%  Similarity=0.825  Sum_probs=211.8

Q ss_pred             ChHHHHHHhhccCCCCCceeccccccccCCccccCCCCCCCCCCCcceEecCCCCCCcchhhcChhhHHHHHHHHHHHHH
Q 013882            1 MLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNT   80 (434)
Q Consensus         1 mLV~kFF~vyS~W~WP~PV~L~~i~~~~lg~~vWdPr~n~rDr~hlMPIITPayP~mNST~NVT~STl~vI~eEf~RG~~   80 (434)
                      +||+|||.+|++|+||+||+|+++++++|+++|||||.|++||+|+|||||||||+||||||||+||++||++||+||++
T Consensus       262 ~Lv~kfF~ifs~W~WP~PVlL~~ie~~~L~~~VWdPr~n~~DryHlMPIITPAyP~~nsthNVS~ST~~Vi~~Ef~~g~~  341 (562)
T KOG2245|consen  262 TLVAKFFRVFSQWNWPNPVLLKPIEEGNLNLPVWDPRVNPSDRYHLMPIITPAYPQMNSTHNVSRSTLKVITEEFKRGLE  341 (562)
T ss_pred             HHHHHHHHHHhhccCCCceEeccccccccCccccCCCCCCCCcceecccccCCcccccccccccHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccchhhhcCCcchhhccccEEEEEEEeCCHhHhHhHHHHHHHHHHHHHHHhhhccCCceeeccCCCCCCCCC
Q 013882           81 ICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTS  160 (434)
Q Consensus        81 I~~~I~~g~~~W~~LFep~~FF~~Yk~YL~I~vsA~see~~~~W~GwVESRLR~Lv~~LE~~~~~~l~ahP~P~~F~d~~  160 (434)
                      ||++|+.++.+|++|||+++||.+|||||+|+++|.++|++.+|.||||||||.|+.+||++. .++.|||+|+.|.++.
T Consensus       342 I~~~i~~~k~~W~~LFE~~~FF~rYk~yl~i~~~A~~~ed~l~w~G~vESriR~Lv~klE~~~-~i~~ahp~P~~f~~~~  420 (562)
T KOG2245|consen  342 ICDDIELNKLDWSDLFELYNFFSRYKHYLQITASAATEEDLLKWVGWVESRIRQLVLKLERNQ-VILIAHPNPKKFKDTY  420 (562)
T ss_pred             HHHHHHhccccHHHHhhhhHHHHHHhhHheeeeeccChHHHhhhhhHHHHHHHHHHHHHHhhc-ceEEecCCcccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999965 5677999999999875


Q ss_pred             C----CCceeeEEEeeeeCCCCccCCCceeehhhHHHHHHHHHh----hhcccCCc--cEEEEEeeccCCCCCCCCCCCc
Q 013882          161 K----PCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSIN----MYMFWKPG--MEICVSHIRRKQIPPYVFPEGY  230 (434)
Q Consensus       161 ~----~~~~~~fFIGL~~~~~~~~~~~~~~DL~~~v~eF~~~I~----~~~~~~~g--M~I~VshVkrsqLP~~Vf~~g~  230 (434)
                      .    ..+...|||||.+..+      .++||+..+++|...++    +...+.+|  |++.+.|+||++|+.+++.+++
T Consensus       421 ~~~~~~~~~~~~~igl~~~e~------~~~Dlt~~iq~f~~~v~~q~~~~~~~~~g~~~~~~~~~~krr~l~~~~~~~~l  494 (562)
T KOG2245|consen  421 NCPLEEDPESLWFIGLEFDEN------VKIDLTKDIQSFKKNVERQAVNLTLIKAGCDVEIDFGHVKRRSLIQTITKEFL  494 (562)
T ss_pred             cCCcccchhHhhhhccccccc------ccchhhhhHHHhhhhhhhcceeeeeeecccccccccccccccccccccCHHHh
Confidence            3    2456789999998754      34999999999999887    44456788  8888889999999999999998


Q ss_pred             cccCCC
Q 013882          231 KRTRHP  236 (434)
Q Consensus       231 kr~r~~  236 (434)
                      ++.|.-
T Consensus       495 ~~~k~~  500 (562)
T KOG2245|consen  495 RLCKQY  500 (562)
T ss_pred             hHHHhh
Confidence            776554

>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>PF04926 PAP_RNA-bind: Poly(A) polymerase predicted RNA binding domain; InterPro: IPR007010 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
1q79_A514 Crystal Structure Of Mammalian Poly(A) Polymerase L 5e-38
1q78_A514 Crystal Structure Of Poly(A) Polymerase In Complex 6e-38
1f5a_A513 Crystal Structure Of Mammalian Poly(A) Polymerase L 6e-32
2hhp_A530 Structure Of Yeast Poly(A) Polymerase In A Closed C 2e-27
1fa0_A537 Structure Of Yeast Poly(A) Polymerase Bound To Mang 3e-27
2o1p_A546 Structure Of Yeast Poly(A) Polymerase In A Somewhat 3e-27
2q66_A525 Structure Of Yeast Poly(A) Polymerase With Atp And 3e-27
>pdb|1Q79|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase Length = 514 Back     alignment and structure 
Iteration: 1

 Score =  155 bits (392), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 91/230 (39%), Positives = 129/230 (56%), Gaps = 14/230 (6%)
Query: 2   LVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSY 61
           LV +FF V++ W WPNPV+L   +E  L   VWDPR N  D+ H MPIITPAYP  NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62  NVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDL 121
           NVS ST  VM+++F+ G  I +E+ L+KA+WS LFE   FF+ Y++Y+ +   A      
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387
Query: 122 LAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTSKPCAHCAFFMGLQRKP 176
           L W G VES++R L   +E++ +  L     Q  P P E  D  K      + +GL  K 
Sbjct: 388 LEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPD--KEEFRTMWVIGLVFKK 445
Query: 177 GEVVQEGQQFDIRGSVEEF-----KLSINMYMFWKPGMEICVSHIRRKQI 221
            E   E    D+   ++ F     + +IN  MF +  M+I   H++RKQ+
Sbjct: 446 TE-NSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDMKIAAMHVKRKQL 493
>pdb|1Q78|A Chain A, Crystal Structure Of Poly(A) Polymerase In Complex With 3'- Datp And Magnesium Chloride Length = 514 Back     alignment and structure
>pdb|1F5A|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase Length = 513 Back     alignment and structure
>pdb|2HHP|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Closed Conformation Length = 530 Back     alignment and structure
>pdb|1FA0|A Chain A, Structure Of Yeast Poly(A) Polymerase Bound To Manganate And 3'-Datp Length = 537 Back     alignment and structure
>pdb|2O1P|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Somewhat Closed State Length = 546 Back     alignment and structure
>pdb|2Q66|A Chain A, Structure Of Yeast Poly(A) Polymerase With Atp And Oligo(A) Length = 525 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 3e-81
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 3e-71
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A* Length = 514 Back     alignment and structure
 Score =  258 bits (660), Expect = 3e-81
 Identities = 86/248 (34%), Positives = 128/248 (51%), Gaps = 12/248 (4%)

Query: 1   MLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSS 60
            LV +FF V++ W WPNPV+L   +E  L   VWDPR N  D+ H MPIITPAYP  NS+
Sbjct: 267 TLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNST 326

Query: 61  YNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADD 120
           YNVS ST  VM+++F+ G  I +E+ L+KA+WS LFE   FF+ Y++Y+ +   A     
Sbjct: 327 YNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQ 386

Query: 121 LLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDT----SKPCAHCAFFMGLQRK- 175
            L W G VES++R L   +E++ +  L  H  P  +        K      + +GL  K 
Sbjct: 387 RLEWVGLVESKIRILVGSLEKNEFITL-AHVNPQSFPAPKENPDKEEFRTMWVIGLVFKK 445

Query: 176 --PGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQ----IPPYVFPEG 229
               E +     +DI+   +           ++  M+I   H++RKQ    +P +V  + 
Sbjct: 446 TENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLLPSHVLQKK 505

Query: 230 YKRTRHPR 237
            K +    
Sbjct: 506 KKHSTEGV 513
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query434
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 100.0
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 100.0
4fh3_A349 Poly(A) RNA polymerase protein CID1; nucleotidyltr 99.19
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 98.93
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 98.71
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 97.83
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 97.55
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 91.28
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 88.95
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A* Back     alignment and structure
Probab=100.00  E-value=2.7e-59  Score=491.75  Aligned_cols=236  Identities=35%  Similarity=0.601  Sum_probs=207.0

Q ss_pred             ChHHHHHHhhccCCCCCceeccccccccCCccccCCCCCCCCCCCcceEecCCCCCCcchhhcChhhHHHHHHHHHHHHH
Q 013882            1 MLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNT   80 (434)
Q Consensus         1 mLV~kFF~vyS~W~WP~PV~L~~i~~~~lg~~vWdPr~n~rDr~hlMPIITPayP~mNST~NVT~STl~vI~eEf~RG~~   80 (434)
                      +||.+||.+|++|+||+||+|+++.++.+++++|||+.|++|+.|+||||||+||++|+|+||+++|+++|++||+||++
T Consensus       267 ~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs~st~~~I~~Ef~rA~~  346 (514)
T 1q79_A          267 TLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLA  346 (514)
T ss_dssp             HHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccchhhhcCCcchhhccccEEEEEEEeCCHhHhHhHHHHHHHHHHHHHHHhhhccCCceeeccCCCCCCCCC
Q 013882           81 ICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTS  160 (434)
Q Consensus        81 I~~~I~~g~~~W~~LFep~~FF~~Yk~YL~I~vsA~see~~~~W~GwVESRLR~Lv~~LE~~~~~~l~ahP~P~~F~d~~  160 (434)
                      ++++|..++.+|++||+|++||.+|+|||+|+++|.+++++.+|.||||||||.||.+||+.. .+..|||||++|.+..
T Consensus       347 il~~i~~~~~~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~~~-~i~~a~~~P~~f~~~~  425 (514)
T 1q79_A          347 ITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNE-FITLAHVNPQSFPAPK  425 (514)
T ss_dssp             HHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTST-TEEEEEECSCCEECCC
T ss_pred             HHHHHhcCCCCHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHHHhccCC-CceeeecCccccCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999864 3445999999998764


Q ss_pred             ----CCCceeeEEEeeeeCCC---CccCCCceeehhhHHHHHHHHHhhhcccCCccEEEEEeeccCCCCCCCCCCCcccc
Q 013882          161 ----KPCAHCAFFMGLQRKPG---EVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGYKRT  233 (434)
Q Consensus       161 ----~~~~~~~fFIGL~~~~~---~~~~~~~~~DL~~~v~eF~~~I~~~~~~~~gM~I~VshVkrsqLP~~Vf~~g~kr~  233 (434)
                          ...|.++|||||.++..   ...+.+.++||+.++++|++.|++|..|++||+|+|+|||+++||++||++|++|.
T Consensus       426 ~~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~~~~~~~~~~~~~~i~v~~vk~~~Lp~~v~~~~~~~~  505 (514)
T 1q79_A          426 ENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLLPSHVLQKK  505 (514)
T ss_dssp             SCTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEEHHHHGGGCC-------
T ss_pred             ccccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHHHHhhccccCCCcEEEEEEechHHCchhhcchhccCC
Confidence                34678999999998752   22235678999999999999999999999999999999999999999999999988


Q ss_pred             CCCc
Q 013882          234 RHPR  237 (434)
Q Consensus       234 r~~~  237 (434)
                      |+.+
T Consensus       506 ~~~~  509 (514)
T 1q79_A          506 KKHS  509 (514)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            7743
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Back     alignment and structure
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A* Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 434
d1q79a3134 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-t 2e-46
d2q66a1150 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, mid 3e-46
d1q79a1150 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, mid 1e-44
d2q66a3178 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-t 2e-40
d2b4va1183 a.160.1.4 (A:289-471) RNA editing terminal uridyl 1e-10
>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 134 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: PAP/Archaeal CCA-adding enzyme, C-terminal domain
family: Poly(A) polymerase, PAP, C-terminal domain
domain: Poly(A) polymerase, PAP, C-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  155 bits (392), Expect = 2e-46
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 101 FFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKL---QCHPYPHEYV 157
           FF+ Y++Y+ +   A      L W G VES++R L   +E++ +  L       +P    
Sbjct: 3   FFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKE 62

Query: 158 DTSKPCAHCAFFMGLQRK---PGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVS 214
           +  K      + +GL  K     E +     +DI+   +           ++  M+I   
Sbjct: 63  NPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAM 122

Query: 215 HIRRKQIPPYV 225
           H++RKQ+   +
Sbjct: 123 HVKRKQLHQLL 133
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Length = 150 Back     information, alignment and structure
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 178 Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 183 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query434
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 100.0
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 100.0
d2q66a3178 Poly(A) polymerase, PAP, C-terminal domain {Baker' 100.0
d1q79a3134 Poly(A) polymerase, PAP, C-terminal domain {Cow (B 100.0
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 98.17
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: Poly(A) polymerase, PAP, middle domain
domain: Poly(A) polymerase, PAP, middle domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-36  Score=270.97  Aligned_cols=98  Identities=54%  Similarity=0.984  Sum_probs=95.8

Q ss_pred             ChHHHHHHhhccCCCCCceeccccccccCCccccCCCCCCCCCCCcceEecCCCCCCcchhhcChhhHHHHHHHHHHHHH
Q 013882            1 MLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNT   80 (434)
Q Consensus         1 mLV~kFF~vyS~W~WP~PV~L~~i~~~~lg~~vWdPr~n~rDr~hlMPIITPayP~mNST~NVT~STl~vI~eEf~RG~~   80 (434)
                      +||.+||.+|++|+||+||+|++++++.+++++||||.|++||.|+|||||||||+||||||||+||+++|++||+||++
T Consensus        53 ~ll~~FF~~ys~W~Wp~PV~l~~~~~~~~~~~~w~pr~~~~dr~~lMpIiTPayP~~Nst~nvt~st~~~i~~E~~ra~~  132 (150)
T d1q79a1          53 TLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLA  132 (150)
T ss_dssp             HHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCeeccCcccccCCCCCCCCCCCCcccccccccccCCCCcccccccccHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccchhhhcCC
Q 013882           81 ICEEVELNKAQWSALFEP   98 (434)
Q Consensus        81 I~~~I~~g~~~W~~LFep   98 (434)
                      |+++|..++.+|++|||.
T Consensus       133 i~~~i~~~~~~W~~Lfe~  150 (150)
T d1q79a1         133 ITDEILLSKAEWSKLFEA  150 (150)
T ss_dssp             HHHHHHTTSSCHHHHTCC
T ss_pred             HHHHHHhCCCCHHHHhcC
Confidence            999999999999999984
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure