Citrus Sinensis ID: 013883
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 434 | 2.2.26 [Sep-21-2011] | |||||||
| P77806 | 386 | Methionine aminotransfera | N/A | no | 0.792 | 0.891 | 0.4 | 5e-78 | |
| O53870 | 397 | Probable N-succinyldiamin | yes | no | 0.792 | 0.866 | 0.435 | 3e-75 | |
| Q71RI9 | 455 | Kynurenine--oxoglutarate | yes | no | 0.792 | 0.756 | 0.390 | 1e-71 | |
| Q58FK9 | 454 | Kynurenine--oxoglutarate | yes | no | 0.797 | 0.762 | 0.385 | 7e-71 | |
| Q6YP21 | 454 | Kynurenine--oxoglutarate | yes | no | 0.794 | 0.759 | 0.381 | 8e-69 | |
| Q0P5G4 | 455 | Kynurenine--oxoglutarate | yes | no | 0.794 | 0.758 | 0.372 | 2e-67 | |
| Q16773 | 422 | Kynurenine--oxoglutarate | no | no | 0.806 | 0.829 | 0.358 | 3e-65 | |
| Q7T3E5 | 450 | Kynurenine--oxoglutarate | yes | no | 0.887 | 0.855 | 0.342 | 1e-64 | |
| Q54KM6 | 435 | Kynurenine--oxoglutarate | yes | no | 0.799 | 0.797 | 0.367 | 2e-64 | |
| Q08415 | 457 | Kynurenine--oxoglutarate | no | no | 0.799 | 0.759 | 0.356 | 5e-63 |
| >sp|P77806|YBDL_ECOLI Methionine aminotransferase OS=Escherichia coli (strain K12) GN=ybdL PE=1 SV=1 | Back alignment and function desciption |
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Score = 291 bits (746), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 213/345 (61%), Gaps = 1/345 (0%)
Query: 90 RLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVP 149
+L + TTIFTQMS LA +H AINL QGFP+FDGP ++++ + G NQYA GV
Sbjct: 11 KLPQLGTTIFTQMSALAQQHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQ 70
Query: 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA 209
AIA + ++ G + D + ++TVT+G TEA+ A I L+ GDEVI F P YDSY
Sbjct: 71 ALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAP 130
Query: 210 TLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIAS 269
++++G +K + L+PP F + +E + +S+ TR +++NTPHNP+ ++ + + +
Sbjct: 131 AIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQ 190
Query: 270 LCIENDVLVFSDEVYDKLAF-EMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA 328
+++ V SDEVY+ + F + H S+ + P + ER V ++S GKT+ +TGWK+G+ +A
Sbjct: 191 AIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVA 250
Query: 329 PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG 388
P ++ +R+ H +LTF+ +TP Q A LRA +Y L Y K+ ILV LN
Sbjct: 251 PAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNESR 310
Query: 389 FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
++ P GTYF++VD++ D+ FC++L +E GV AIP SVF
Sbjct: 311 LEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVF 355
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Shows aminotransferase activity with methionine and histidine as substrates, and to a lesser extent also with phenylalanine. Escherichia coli (strain K12) (taxid: 83333) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 8EC: 8 |
| >sp|O53870|DAPC_MYCTU Probable N-succinyldiaminopimelate aminotransferase DapC OS=Mycobacterium tuberculosis GN=dapC PE=1 SV=1 | Back alignment and function description |
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Score = 282 bits (722), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 151/347 (43%), Positives = 209/347 (60%), Gaps = 3/347 (0%)
Query: 90 RLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVP 149
RL + TT+F +MS LA + GA+NLGQGFP+ DGP + AA AI G NQY G G
Sbjct: 5 RLRPYATTVFAEMSALATRIGAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPPGPGSA 64
Query: 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA 209
AIA++ ++ G++ DPE EV VT G TEAIAA +LGL+ PG EV+L PFYDSY
Sbjct: 65 PLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSP 124
Query: 210 TLSMAGAKIKCITLRPP--DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267
++MAGA + L P FA+ + L+ ++ TRA+++N+PHNPTG + + EL I
Sbjct: 125 VVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAI 184
Query: 268 ASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWA 326
A + + +++V +DEVY+ L F+ H+ +A GM ERT+T++S K F+ TGWKIGWA
Sbjct: 185 AEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWA 244
Query: 327 IAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA 386
P L GVR A +L++ P Q A AL + + L+ A++ L GL
Sbjct: 245 CGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTE 304
Query: 387 VGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
+GF V S GTYF+ D P G++ FC L ++VGV AIP S F
Sbjct: 305 IGFAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAF 351
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Involved in the lysine biosynthetic pathways. It catalyzes the transfer of an amino group from L-glutamate to N-succinyl-2-l-amino-6-oxoheptanedioate (N-succinyl-2-l-amino-6-ketopimelate) in a PLP-dependent reaction, yielding as products N-succinyl-l-2,6-diaminoheptanedioate (N-succinyl-diaminopimelate) and 2-oxoglutarate. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 EC: 7 |
| >sp|Q71RI9|KAT3_MOUSE Kynurenine--oxoglutarate transaminase 3 OS=Mus musculus GN=Ccbl2 PE=1 SV=1 | Back alignment and function description |
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Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 212/376 (56%), Gaps = 32/376 (8%)
Query: 88 AKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQA-IRDGKNQYARGH 146
AKR+E + ++ + + LA +NLGQGFP+ P +VK+ +A D NQY RG
Sbjct: 43 AKRIEGLDSNVWVEFTKLAADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGF 102
Query: 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDS 206
G P A++ + K ++DP +E+ V G ++ +I GL++PGDEVI+ PFYD
Sbjct: 103 GHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDC 162
Query: 207 YEATLSMAGAKIKCITLRPP----------DFAIPIEELKSTISKNTRAILMNTPHNPTG 256
YE + MAGA I LR D+ EL+S S T+AI++NTPHNP G
Sbjct: 163 YEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLG 222
Query: 257 KMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKT 315
K++TR+EL VIA LC+++D L SDEVY+ L + H+ IA+LPGM+ERT+T+ S GKT
Sbjct: 223 KVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKT 282
Query: 316 FSLTGWKIGWAIAPPHLTWGVR--QAHSFLTFATSTPMQ-------WAATAALRAPETYY 366
FS+TGWK+GW+I P HL ++ Q +SF T A TP+Q W + PE Y+
Sbjct: 283 FSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTCA--TPLQAALAEAFWIDIKRMDDPECYF 340
Query: 367 EELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHET---------DIAFCE 417
L ++ K+ +V LN+VG K G YF++ D + G + D F +
Sbjct: 341 NSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVK 400
Query: 418 YLIKEVGVVAIPTSVF 433
++ K + AIP S F
Sbjct: 401 WMTKHKKLTAIPVSAF 416
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Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). May catalyze the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond (By similarity). Has transaminase activity towards L-kynurenine, tryptophan, phenylalanine, serine, cysteine, methionine, histidine, glutamine and asparagine with glyoxylate as an amino group acceptor (in vitro). Has lower activity with 2-oxoglutarate as amino group acceptor (in vitro). Mus musculus (taxid: 10090) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 3 |
| >sp|Q58FK9|KAT3_RAT Kynurenine--oxoglutarate transaminase 3 OS=Rattus norvegicus GN=Ccbl2 PE=2 SV=1 | Back alignment and function description |
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Score = 268 bits (684), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 144/374 (38%), Positives = 207/374 (55%), Gaps = 28/374 (7%)
Query: 88 AKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQA-IRDGKNQYARGH 146
AKR+E ++ + + LA +NLGQGFP+ P +V++ +A D NQY RG
Sbjct: 42 AKRIEGLDQNVWVEFTKLAADPSVVNLGQGFPDITLPSYVQEELSKAAFIDNLNQYTRGF 101
Query: 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDS 206
G P A++ + K ++DP +E+ VT G ++ I GL++PGDEVI+ PFYD
Sbjct: 102 GHPSLVKALSCLYGKIYQKQIDPNEEILVTVGGYGSLFNAIQGLVDPGDEVIIMVPFYDC 161
Query: 207 YEATLSMAGAKIKCITLRPP----------DFAIPIEELKSTISKNTRAILMNTPHNPTG 256
YE + MAGA I LR D+ +EL+S S T+AI++NTPHNP G
Sbjct: 162 YEPMVKMAGAVPVFIPLRSKRTDGMKWTSSDWTFNPQELESKFSSKTKAIILNTPHNPIG 221
Query: 257 KMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKT 315
K++TREEL VIA LCI++D L SDEVY+ L + HI +ASLPGM++RT+T+ S GKT
Sbjct: 222 KVYTREELQVIADLCIKHDTLCISDEVYEWLVYTGHKHIKVASLPGMWDRTLTIGSAGKT 281
Query: 316 FSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQ-------WAATAALRAPETYYEE 368
FS+TGWK+GW+I P HL +R + +TP+Q W + PE Y+
Sbjct: 282 FSVTGWKLGWSIGPGHLIKHLRTVQQTSVYTCATPLQAALAEAFWIDIKRMDDPECYFNS 341
Query: 369 LKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHET---------DIAFCEYL 419
L ++ K+ + LN+VG K G YF++ D + G + D F +++
Sbjct: 342 LPKELEVKRDRMACLLNSVGLKPIIPDGGYFIIADVSSLGVDLSDVKSDEPYDYKFVKWM 401
Query: 420 IKEVGVVAIPTSVF 433
K + AIP S F
Sbjct: 402 TKNKKLSAIPVSAF 415
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Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). May catalyze the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond (By similarity). Has transaminase activity towards L-kynurenine, tryptophan, phenylalanine, serine, cysteine, methionine, histidine, glutamine and asparagine with glyoxylate as an amino group acceptor (in vitro). Has lower activity with 2-oxoglutarate as amino group acceptor (in vitro). Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 3 |
| >sp|Q6YP21|KAT3_HUMAN Kynurenine--oxoglutarate transaminase 3 OS=Homo sapiens GN=CCBL2 PE=1 SV=1 | Back alignment and function description |
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Score = 261 bits (667), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 143/375 (38%), Positives = 207/375 (55%), Gaps = 30/375 (8%)
Query: 88 AKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKD--AAIQAIRDGKNQYARG 145
AKR+E + ++ + + LA +NLGQGFP+ P +VK+ + I AI D NQY RG
Sbjct: 42 AKRIEGLDSNVWIEFTKLAADPSVVNLGQGFPDISPPTYVKEELSKIAAI-DSLNQYTRG 100
Query: 146 HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYD 205
G P A++ ++K ++D KE+ VT G ++ TI LI+ GDEVIL PFYD
Sbjct: 101 FGHPSLVKALSYLYEKLYQKQIDSNKEILVTVGAYGSLFNTIQALIDEGDEVILIVPFYD 160
Query: 206 SYEATLSMAGAKIKCITLRPP----------DFAIPIEELKSTISKNTRAILMNTPHNPT 255
YE + MAGA I LR D+ + +EL+S + T+AI++NTPHNP
Sbjct: 161 CYEPMVRMAGATPVFIPLRSKPVYGKRWSSSDWTLDPQELESKFNSKTKAIILNTPHNPL 220
Query: 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGK 314
GK++ REEL VIA LCI+ D L SDEVY+ L + + H+ IA+ PGM+ERT+T+ S GK
Sbjct: 221 GKVYNREELQVIADLCIKYDTLCISDEVYEWLVYSGNKHLKIATFPGMWERTITIGSAGK 280
Query: 315 TFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQ-------WAATAALRAPETYYE 367
TFS+TGWK+GW+I P HL ++ + +TP+Q W + PE Y+
Sbjct: 281 TFSVTGWKLGWSIGPNHLIKHLQTVQQNTIYTCATPLQEALAQAFWIDIKRMDDPECYFN 340
Query: 368 ELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHET---------DIAFCEY 418
L ++ K+ +V L +VG K G YF++ D + + D F ++
Sbjct: 341 SLPKELEVKRDRMVRLLESVGLKPIVPDGGYFIIADVSLLDPDLSDMKNNEPYDYKFVKW 400
Query: 419 LIKEVGVVAIPTSVF 433
+ K + AIP S F
Sbjct: 401 MTKHKKLSAIPVSAF 415
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Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). May catalyze the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond (By similarity). Has transaminase activity towards L-kynurenine, tryptophan, phenylalanine, serine, cysteine, methionine, histidine, glutamine and asparagine with glyoxylate as an amino group acceptor (in vitro). Has lower activity with 2-oxoglutarate as amino group acceptor (in vitro). Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 3 |
| >sp|Q0P5G4|KAT3_BOVIN Kynurenine--oxoglutarate transaminase 3 OS=Bos taurus GN=CCBL2 PE=2 SV=1 | Back alignment and function description |
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Score = 256 bits (654), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 140/376 (37%), Positives = 208/376 (55%), Gaps = 31/376 (8%)
Query: 88 AKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKD--AAIQAIRDGKNQYARG 145
AKR+E + I+ + + LA +NLGQG P+ P +VK+ + I AI D NQY RG
Sbjct: 42 AKRIEGLDSNIWIEFTKLAADPSVVNLGQGLPDISPPVYVKEELSKIAAI-DNLNQYTRG 100
Query: 146 HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYD 205
G P A++ ++K +++P +E+ VT G ++ I GLI+ GDEVI+ PF+D
Sbjct: 101 FGHPSLVKALSCLYEKFYHNKINPNEEILVTVGAYGSLFNAIQGLIDEGDEVIVIVPFFD 160
Query: 206 SYEATLSMAGAKIKCITLR----------PPDFAIPIEELKSTISKNTRAILMNTPHNPT 255
YE+ + MAGA + LR D+ + +EL S + T+AI++NTPHNP
Sbjct: 161 CYESMVRMAGATPVFVPLRCKPVDGKKCSSSDWTLDPQELASKFNSKTKAIILNTPHNPL 220
Query: 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGK 314
GK++T+EEL VIA LCI+ D L SDEVY+ L + + H IA+ PGM+ERT+T+ S GK
Sbjct: 221 GKVYTKEELQVIADLCIKYDTLCISDEVYEWLVYTGNKHFKIATFPGMWERTITIGSAGK 280
Query: 315 TFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQ-------WAATAALRAPETYYE 367
TFS+TGWK+GW+I P HL ++ + +TP+Q W + PE Y+
Sbjct: 281 TFSVTGWKLGWSIGPKHLIKHLQTVQQNTVYTCATPLQEALAQAFWIDIKRMDDPECYFN 340
Query: 368 ELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHET----------DIAFCE 417
L ++ K+ +V L +VG K G YF++ D + + D F +
Sbjct: 341 SLPKELEVKRDRMVHLLESVGLKSIVPDGGYFIIADVSLLDVDLLDMKDSNEPYDYKFVK 400
Query: 418 YLIKEVGVVAIPTSVF 433
++IK + AIP S F
Sbjct: 401 WMIKNKKLSAIPVSAF 416
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Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). May catalyze the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond (By similarity). Has transaminase activity towards L-kynurenine, tryptophan, phenylalanine, serine, cysteine, methionine, histidine, glutamine and asparagine with glyoxylate as an amino group acceptor (in vitro). Has lower activity with 2-oxoglutarate as amino group acceptor (in vitro). Bos taurus (taxid: 9913) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 3 |
| >sp|Q16773|KAT1_HUMAN Kynurenine--oxoglutarate transaminase 1 OS=Homo sapiens GN=CCBL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (636), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 137/382 (35%), Positives = 206/382 (53%), Gaps = 32/382 (8%)
Query: 85 QQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDG--KNQY 142
Q A+RL+ + + LA +H +NLGQGFP+F PDF +A A+ NQY
Sbjct: 4 QLQARRLDGIDYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQY 63
Query: 143 ARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAP 202
+ G P +AS F + G E+DP + V VT G A+ L++ GDEVI+ P
Sbjct: 64 TKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEP 123
Query: 203 FYDSYEATLSMAGAKIKCITLRP-----------PDFAIPIEELKSTISKNTRAILMNTP 251
F+D YE MAG + ++L+P ++ + EL + T+A+++NTP
Sbjct: 124 FFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTP 183
Query: 252 HNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMN 310
+NP GK+F+REEL ++ASLC ++DV+ +DEVY + ++ HISIASLPGM+ERT+T+
Sbjct: 184 NNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIG 243
Query: 311 SLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAA-------LRAPE 363
S GKTFS TGWK+GW + P H+ +R H F T Q A + R P
Sbjct: 244 SAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPS 303
Query: 364 TYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHET-----------D 412
+Y+ + + + ++ L +VG K G+YF++ D + F + D
Sbjct: 304 SYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYD 363
Query: 413 IAFCEYLIKEVGVVAIPTSVFY 434
F +++IK G+VAIP S+FY
Sbjct: 364 RRFVKWMIKNKGLVAIPVSIFY 385
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Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). Metabolizes the cysteine conjugates of certain halogenated alkenes and alkanes to form reactive metabolites. Catalyzes the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 4 |
| >sp|Q7T3E5|KAT3_DANRE Kynurenine--oxoglutarate transaminase 3 OS=Danio rerio GN=ccbl2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 248 bits (632), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 146/426 (34%), Positives = 220/426 (51%), Gaps = 41/426 (9%)
Query: 36 LHTISITDSANTRRRGISTTCPRYPSLMASLSTVSTNQSDTIQKTNLQPQQVAKRLEKFK 95
+H I + ++ RR + T R S S+ N + K A+R+E
Sbjct: 1 MHPIHLLRIVSSVRRLLQTNRCR------SFSSCQHNMASIKHKN-------ARRIEGLD 47
Query: 96 TTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQA-IRDGKNQYARGHGVPEFNSA 154
++ + +A +NLGQG+P+ P +VK+ QA + D NQY RG G P A
Sbjct: 48 KNVWVAFTSVAADPSIVNLGQGYPDIPPPSYVKEGLAQAAMVDRLNQYTRGFGHPTLVKA 107
Query: 155 IASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMA 214
++ + K ++DP KE+ VT G ++ +T+ L+ GDEVI+ PF+D Y + MA
Sbjct: 108 LSKVYGKVYDRQLDPFKEILVTVGGYGSLFSTMQALVEEGDEVIIIEPFFDCYVPMVKMA 167
Query: 215 GAKIKCITLR----------PPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL 264
GAK I LR D+ + EEL S + T+AI++NTP+NP GK+F+R EL
Sbjct: 168 GAKPVLIPLRLKSTATTGISSADWVLDQEELASKFNSKTKAIIVNTPNNPIGKIFSRSEL 227
Query: 265 NVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKI 323
IA LCI++D L FSDEVY+ L ++ +H+ IA+LPGM++RT+T+ S GKTFS+TGWK+
Sbjct: 228 QAIADLCIKHDTLCFSDEVYEWLIYKGHEHVKIATLPGMWDRTITVGSAGKTFSVTGWKL 287
Query: 324 GWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALR-------APETYYEELKRDYSAK 376
GW+I P HL ++ + TP+Q A L P+ Y+ L + K
Sbjct: 288 GWSIGPEHLIRHLQTVMQNSLYTCPTPLQEAVGRGLLRDFELMGQPDCYFSALALELEGK 347
Query: 377 KAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHET---------DIAFCEYLIKEVGVVA 427
+ + L G G YF++VD T + D F +++IKE + A
Sbjct: 348 RDRMAAMLAQTGMTPVVPEGGYFMIVDVTALNQDLTHMGDDEPYDYKFVKWMIKEKKLAA 407
Query: 428 IPTSVF 433
IP + F
Sbjct: 408 IPVTAF 413
|
Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). May catalyze the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond (By similarity). Has transaminase activity towards L-kynurenine, tryptophan, phenylalanine, serine, cysteine, methionine, histidine, glutamine and asparagine with glyoxylate as an amino group acceptor (in vitro). Has lower activity with 2-oxoglutarate as amino group acceptor (in vitro). Danio rerio (taxid: 7955) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 3 |
| >sp|Q54KM6|KAT_DICDI Kynurenine--oxoglutarate transaminase OS=Dictyostelium discoideum GN=ccbl PE=3 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/384 (36%), Positives = 205/384 (53%), Gaps = 37/384 (9%)
Query: 88 AKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIR-DGKNQYARGH 146
+K+ F +++ + S LAIK+ A+NLGQGFPNF+ P FVKDA I+ I G NQY R
Sbjct: 17 SKQTSSFGPSVWLEFSPLAIKYNAVNLGQGFPNFEPPKFVKDAMIKTIEVGGFNQYTRSP 76
Query: 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDS 206
G A++S + G E++ E+ V G +E++ A I ++N GDEVIL PF+D
Sbjct: 77 GHIRLVKALSSVYSPYFGRELNAMTEIMVGVGASESLFAAISSIVNEGDEVILIEPFFDI 136
Query: 207 YEATLSMAGAKIKCITLRPPD---------------FAIPIEELKSTISKNTRAILMNTP 251
Y + MAG K +TL+ + + I EEL + + T+ I++N P
Sbjct: 137 YIGPILMAGGIPKFVTLKEEESSQAGSSDKKRSSKHWKINKEELAAAFTDKTKLIILNNP 196
Query: 252 HNPTGKMFTREELNVIASLCIEN--DVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVT 308
HNP GK++++EEL IA + ++ + V SDEVY+ + F+ +H A+LPGM+ERT+T
Sbjct: 197 HNPVGKVYSKEELQEIADVVAKHGPNTTVISDEVYEWMTFDGEEHHRFATLPGMWERTIT 256
Query: 309 MNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYY 366
+ S GKTFS+TGWK+GW I P ++ + H ++ F+ TP Q A AL P + Y+
Sbjct: 257 IGSAGKTFSITGWKVGWCIGPSNIIGAIANTHQYVPFSVPTPTQEAVAIALEQPNIKDYF 316
Query: 367 EELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFG----------------HE 410
+EL Y K+ L+ L G GTYF++ D + H
Sbjct: 317 KELATMYQNKRDTLLNSLTQAGLDPVIPQGTYFIMGDTSSIHLQGDQGKDTSITGMGLHL 376
Query: 411 TDIAFCEYLIKEVGVVAIPTSVFY 434
D YL E GV IP S FY
Sbjct: 377 RDWNIARYLTTEYGVTTIPPSAFY 400
|
Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). Metabolizes the cysteine conjugates of certain halogenated alkenes and alkanes to form reactive metabolites. Catalyzes the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 4 |
| >sp|Q08415|KAT1_RAT Kynurenine--oxoglutarate transaminase 1, mitochondrial OS=Rattus norvegicus GN=Ccbl1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 242 bits (617), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 135/379 (35%), Positives = 203/379 (53%), Gaps = 32/379 (8%)
Query: 88 AKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDG--KNQYARG 145
A+RL+ ++ + L ++ +NLGQGFP+F PDF A QA NQY R
Sbjct: 41 ARRLDGIDQNLWVEFGKLTKEYDVVNLGQGFPDFSPPDFATQAFQQATSGNFMLNQYTRA 100
Query: 146 HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYD 205
G P + +AS F K G E+DP V VT G A+ L++ GDEVI+ P +D
Sbjct: 101 FGYPPLTNVLASFFGKLLGQEMDPLTNVLVTVGAYGALFTRFQALVDEGDEVIIMEPAFD 160
Query: 206 SYEATLSMAGAKIKCITLRPP-----------DFAIPIEELKSTISKNTRAILMNTPHNP 254
YE MAG +TL+P D+ + EL S + T+ +++NTP+NP
Sbjct: 161 CYEPMTMMAGGCPVFVTLKPSPAPKGKLGASNDWQLDPAELASKFTPRTKILVLNTPNNP 220
Query: 255 TGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLG 313
GK+F+R EL ++A+LC ++DV+ SDEVY L ++ H+SIASLPGM++RT+T+ S G
Sbjct: 221 LGKVFSRMELELVANLCQQHDVVCISDEVYQWLVYDGHQHVSIASLPGMWDRTLTIGSAG 280
Query: 314 KTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALR-------APETYY 366
K+FS TGWK+GW + P ++ +R H F T Q A P +Y+
Sbjct: 281 KSFSATGWKVGWVMGPDNIMKHLRTVHQNSIFHCPTQAQAAVAQCFEREQQHFGQPSSYF 340
Query: 367 EELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPF--------GHET---DIAF 415
+L + + ++ L +VG K++ S G+YF++ D + F G E D F
Sbjct: 341 LQLPQAMELNRDHMIRSLQSVGLKLWISQGSYFLIADISDFKSKMPDLPGAEDEPYDRRF 400
Query: 416 CEYLIKEVGVVAIPTSVFY 434
+++IK +G+V IP S F+
Sbjct: 401 AKWMIKNMGLVGIPVSTFF 419
|
Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). Metabolizes the cysteine conjugates of certain halogenated alkenes and alkanes to form reactive metabolites. Catalyzes the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 434 | ||||||
| 255545444 | 462 | Aminotransferase ybdL, putative [Ricinus | 0.956 | 0.898 | 0.791 | 0.0 | |
| 225459507 | 911 | PREDICTED: uncharacterized protein LOC10 | 0.868 | 0.413 | 0.873 | 0.0 | |
| 302141843 | 409 | unnamed protein product [Vitis vinifera] | 0.857 | 0.909 | 0.876 | 0.0 | |
| 388518759 | 453 | unknown [Lotus japonicus] | 0.963 | 0.922 | 0.763 | 0.0 | |
| 224066857 | 409 | predicted protein [Populus trichocarpa] | 0.852 | 0.904 | 0.858 | 0.0 | |
| 357461581 | 396 | Kynurenine-oxoglutarate transaminase [Me | 0.831 | 0.911 | 0.875 | 0.0 | |
| 388501844 | 403 | unknown [Lotus japonicus] | 0.845 | 0.910 | 0.864 | 0.0 | |
| 224082262 | 413 | predicted protein [Populus trichocarpa] | 0.857 | 0.900 | 0.851 | 0.0 | |
| 356515870 | 439 | PREDICTED: aminotransferase YbdL-like [G | 0.919 | 0.908 | 0.787 | 0.0 | |
| 356509440 | 450 | PREDICTED: aminotransferase YbdL-like [G | 0.919 | 0.886 | 0.792 | 0.0 |
| >gi|255545444|ref|XP_002513782.1| Aminotransferase ybdL, putative [Ricinus communis] gi|223546868|gb|EEF48365.1| Aminotransferase ybdL, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/446 (79%), Positives = 378/446 (84%), Gaps = 31/446 (6%)
Query: 1 MQCQCTWTCCESKM---LKPSAFGSSFSSSALLSFSKHLHTISITDSANTRRRGISTTCP 57
MQ QCTWT + LKPS F S KHL T R ST P
Sbjct: 1 MQSQCTWTGTRMPLPIILKPSTF----------SILKHLPT--------KRTNLFSTRSP 42
Query: 58 --RYPSLMASLSTVST-------NQSDTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIK 108
YPSLMA+ ST ST Q+D+ QK+ QP QVAKRLEKFKTTIFTQMS LAIK
Sbjct: 43 ISNYPSLMATFSTASTTEKDAPSGQNDSTQKSQ-QPLQVAKRLEKFKTTIFTQMSSLAIK 101
Query: 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVD 168
HGAINLGQGFPNFDGP+FVK+AAIQAIRDGKNQYARG+GVP+FNSAI RFKKD+GL VD
Sbjct: 102 HGAINLGQGFPNFDGPEFVKEAAIQAIRDGKNQYARGYGVPDFNSAIVDRFKKDTGLVVD 161
Query: 169 PEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDF 228
PEKEVTVTSGCTEAIAATILGLI+PGDEVILFAPFYDSYEATLSMAGAKIKC+TL+PPDF
Sbjct: 162 PEKEVTVTSGCTEAIAATILGLIDPGDEVILFAPFYDSYEATLSMAGAKIKCVTLQPPDF 221
Query: 229 AIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLA 288
A+PI+ELKS ISKNTRAIL+NTPHNPTGKMFTREEL IAS CIENDVLVF+DEVYDKLA
Sbjct: 222 AVPIDELKSIISKNTRAILINTPHNPTGKMFTREELTTIASCCIENDVLVFTDEVYDKLA 281
Query: 289 FEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348
FEMDHIS+ASLPGMYERTVT+NSLGKTFSLTGWKIGWAIAPPHLTWGVRQAH+FLTFATS
Sbjct: 282 FEMDHISMASLPGMYERTVTLNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHAFLTFATS 341
Query: 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFG 408
TPMQWAA+ ALRAP++Y+EELKRDY AKKAILVEGL AVGFKVFPSSGTYFVVVDHTPFG
Sbjct: 342 TPMQWAASVALRAPDSYFEELKRDYMAKKAILVEGLKAVGFKVFPSSGTYFVVVDHTPFG 401
Query: 409 HETDIAFCEYLIKEVGVVAIPTSVFY 434
E DIAFCE+LIKEVGVVAIPTSVFY
Sbjct: 402 LENDIAFCEHLIKEVGVVAIPTSVFY 427
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459507|ref|XP_002284432.1| PREDICTED: uncharacterized protein LOC100245359 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/378 (87%), Positives = 354/378 (93%), Gaps = 1/378 (0%)
Query: 58 RYPSLMASLSTVSTNQSDTIQKTNL-QPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQ 116
+YPS MAS STVS ++ Q N QP QVAKRLEKFKTTIFTQMSMLAIKHGAINLGQ
Sbjct: 37 KYPSFMASASTVSAPNTEAEQTHNPPQPLQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQ 96
Query: 117 GFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVT 176
GFPNFDGP+FVK+AAIQAI+DGKNQYARG+GVP+ NSA+A RFKKD+GL VDPEKEVTVT
Sbjct: 97 GFPNFDGPEFVKEAAIQAIKDGKNQYARGYGVPDLNSAVADRFKKDTGLVVDPEKEVTVT 156
Query: 177 SGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELK 236
SGCTEAIAAT+LGLINPGDEVILFAPFYDSYEATLSMAGA+IK ITLRPPDFA+P++ELK
Sbjct: 157 SGCTEAIAATMLGLINPGDEVILFAPFYDSYEATLSMAGAQIKSITLRPPDFAVPMDELK 216
Query: 237 STISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISI 296
S ISKNTRAIL+NTPHNPTGKMFTREELNVIASLCIENDVLVF+DEVYDKLAFEMDHIS+
Sbjct: 217 SAISKNTRAILINTPHNPTGKMFTREELNVIASLCIENDVLVFTDEVYDKLAFEMDHISM 276
Query: 297 ASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAAT 356
ASLPGMYERTVTMNSLGKTFSLTGWKIGW +APPHLTWGVRQAHSFLTFAT TPMQWAA
Sbjct: 277 ASLPGMYERTVTMNSLGKTFSLTGWKIGWTVAPPHLTWGVRQAHSFLTFATCTPMQWAAA 336
Query: 357 AALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFC 416
ALRAP++YYEELKRDYSAKKAILVEGL AVGF+V+PSSGTYFVVVDHTPFG + DIAFC
Sbjct: 337 TALRAPDSYYEELKRDYSAKKAILVEGLKAVGFRVYPSSGTYFVVVDHTPFGLKDDIAFC 396
Query: 417 EYLIKEVGVVAIPTSVFY 434
EYLIKEVGVVAIPTSVFY
Sbjct: 397 EYLIKEVGVVAIPTSVFY 414
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302141843|emb|CBI19046.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/373 (87%), Positives = 350/373 (93%), Gaps = 1/373 (0%)
Query: 63 MASLSTVSTNQSDTIQKTNL-QPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNF 121
MAS STVS ++ Q N QP QVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNF
Sbjct: 1 MASASTVSAPNTEAEQTHNPPQPLQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNF 60
Query: 122 DGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181
DGP+FVK+AAIQAI+DGKNQYARG+GVP+ NSA+A RFKKD+GL VDPEKEVTVTSGCTE
Sbjct: 61 DGPEFVKEAAIQAIKDGKNQYARGYGVPDLNSAVADRFKKDTGLVVDPEKEVTVTSGCTE 120
Query: 182 AIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK 241
AIAAT+LGLINPGDEVILFAPFYDSYEATLSMAGA+IK ITLRPPDFA+P++ELKS ISK
Sbjct: 121 AIAATMLGLINPGDEVILFAPFYDSYEATLSMAGAQIKSITLRPPDFAVPMDELKSAISK 180
Query: 242 NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPG 301
NTRAIL+NTPHNPTGKMFTREELNVIASLCIENDVLVF+DEVYDKLAFEMDHIS+ASLPG
Sbjct: 181 NTRAILINTPHNPTGKMFTREELNVIASLCIENDVLVFTDEVYDKLAFEMDHISMASLPG 240
Query: 302 MYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRA 361
MYERTVTMNSLGKTFSLTGWKIGW +APPHLTWGVRQAHSFLTFAT TPMQWAA ALRA
Sbjct: 241 MYERTVTMNSLGKTFSLTGWKIGWTVAPPHLTWGVRQAHSFLTFATCTPMQWAAATALRA 300
Query: 362 PETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIK 421
P++YYEELKRDYSAKKAILVEGL AVGF+V+PSSGTYFVVVDHTPFG + DIAFCEYLIK
Sbjct: 301 PDSYYEELKRDYSAKKAILVEGLKAVGFRVYPSSGTYFVVVDHTPFGLKDDIAFCEYLIK 360
Query: 422 EVGVVAIPTSVFY 434
EVGVVAIPTSVFY
Sbjct: 361 EVGVVAIPTSVFY 373
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388518759|gb|AFK47441.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/435 (76%), Positives = 368/435 (84%), Gaps = 17/435 (3%)
Query: 1 MQCQCTWTCCESKMLKPSAFGSSFSSSALLSFSKHLHTISITDSANTRRRGISTTCPRYP 60
MQ T TC GS F S+ L S + IT S + P++P
Sbjct: 1 MQVYRTCTCPH--------LGSRFMPSSKLLLSLNFTNHFITPS--------NLPTPKFP 44
Query: 61 S-LMASLSTVSTNQSDTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFP 119
S + A++ST + Q+DT + P QVAKRLEKFKTTIFTQ+S LA+KHGAINLGQGFP
Sbjct: 45 SSIAATMSTTVSTQNDTTAQKTHHPVQVAKRLEKFKTTIFTQISTLAVKHGAINLGQGFP 104
Query: 120 NFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGC 179
NFDGP+FVK+AAIQAIRDGKNQYARG+GVP+ N AIA RFKKD+GL+VDPEKEVTVTSGC
Sbjct: 105 NFDGPEFVKEAAIQAIRDGKNQYARGYGVPDLNIAIAERFKKDTGLDVDPEKEVTVTSGC 164
Query: 180 TEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTI 239
TEAIAAT+LGLINPGD VILFAPFYDSYEATLSMAGAK+K ITLRPPDFA+PIEEL+STI
Sbjct: 165 TEAIAATMLGLINPGDGVILFAPFYDSYEATLSMAGAKVKSITLRPPDFAVPIEELRSTI 224
Query: 240 SKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASL 299
SKNTRAIL+NTPHNPTGKMFTREELN IASLCIENDVLVF+DEVYDKLAF+M+HIS+ASL
Sbjct: 225 SKNTRAILLNTPHNPTGKMFTREELNTIASLCIENDVLVFTDEVYDKLAFDMEHISLASL 284
Query: 300 PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAAL 359
PGM+ERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAH+FLTFATS QWAA AL
Sbjct: 285 PGMFERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHAFLTFATSNANQWAAAVAL 344
Query: 360 RAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYL 419
RAP++Y+ +LKRDY AK+AILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHE D+AFCEYL
Sbjct: 345 RAPDSYFVDLKRDYLAKRAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHENDVAFCEYL 404
Query: 420 IKEVGVVAIPTSVFY 434
IKEVGV AIPTSVFY
Sbjct: 405 IKEVGVAAIPTSVFY 419
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224066857|ref|XP_002302248.1| predicted protein [Populus trichocarpa] gi|222843974|gb|EEE81521.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/375 (85%), Positives = 351/375 (93%), Gaps = 5/375 (1%)
Query: 60 PSLMASLSTVSTNQSDTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFP 119
PSL ++ST Q+++ QKT QP QVAKRLEKFKTTIFTQMS LAIKHGAINLGQGFP
Sbjct: 5 PSLKDAVST----QNESTQKTQ-QPLQVAKRLEKFKTTIFTQMSSLAIKHGAINLGQGFP 59
Query: 120 NFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGC 179
NFDGP+FVK+AAIQAI+DGKNQYARG+GVP+F+SAIA RFKKD+GL VDPEKE+TVTSGC
Sbjct: 60 NFDGPEFVKEAAIQAIKDGKNQYARGYGVPDFSSAIAERFKKDTGLVVDPEKEITVTSGC 119
Query: 180 TEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTI 239
TEAIAAT+LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITL PPDFA+PI+ELKS I
Sbjct: 120 TEAIAATMLGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLHPPDFAVPIDELKSAI 179
Query: 240 SKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASL 299
+++TRA+L+NTPHNPTGKMF+REEL+ IASLCIENDVLVF+DEVYDKLAFE+DHIS+ASL
Sbjct: 180 TQDTRAVLINTPHNPTGKMFSREELSTIASLCIENDVLVFTDEVYDKLAFELDHISMASL 239
Query: 300 PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAAL 359
PGMYERTVT+NSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAA AL
Sbjct: 240 PGMYERTVTLNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAAAVAL 299
Query: 360 RAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYL 419
RAPE+Y+ ELKRDY AKK ILVEGL AVGFKVFPSSGTYFVVVDHTPFG E DIAFCEYL
Sbjct: 300 RAPESYFVELKRDYMAKKEILVEGLKAVGFKVFPSSGTYFVVVDHTPFGLENDIAFCEYL 359
Query: 420 IKEVGVVAIPTSVFY 434
IKEVGVVAIPTSVFY
Sbjct: 360 IKEVGVVAIPTSVFY 374
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357461581|ref|XP_003601072.1| Kynurenine-oxoglutarate transaminase [Medicago truncatula] gi|355490120|gb|AES71323.1| Kynurenine-oxoglutarate transaminase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/361 (87%), Positives = 339/361 (93%)
Query: 74 SDTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQ 133
S + N+ P QVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVK+AAIQ
Sbjct: 2 STAVSTDNITPLQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKEAAIQ 61
Query: 134 AIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINP 193
AIRDG NQYARG+GVP+ N AI+ R+KKD+GL VDPEKE+TVTSGCTEAIAAT+LGLINP
Sbjct: 62 AIRDGNNQYARGYGVPDLNIAISERYKKDTGLAVDPEKEITVTSGCTEAIAATVLGLINP 121
Query: 194 GDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHN 253
GDEVI+FAPFYDSYEATLSMAGAK+K ITLRPPDFA+PIEELKSTISKNTRAIL+NTPHN
Sbjct: 122 GDEVIVFAPFYDSYEATLSMAGAKVKGITLRPPDFALPIEELKSTISKNTRAILLNTPHN 181
Query: 254 PTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLG 313
PTGKMFT EELN IASLCIENDVLVFSDEVYDKLAF+M+HISIASLPGM+ERTVTMNSLG
Sbjct: 182 PTGKMFTPEELNTIASLCIENDVLVFSDEVYDKLAFDMEHISIASLPGMFERTVTMNSLG 241
Query: 314 KTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDY 373
KTFSLTGWKIGWAIAPPHLTWGVRQAH+FLTFATS PMQWAA ALRAP++YY ELKRDY
Sbjct: 242 KTFSLTGWKIGWAIAPPHLTWGVRQAHAFLTFATSNPMQWAAAVALRAPDSYYTELKRDY 301
Query: 374 SAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
AK++ILVEGL AVGFKVFPSSGTYFVVVDHTPFGHE DIAFCEYL+KEVGVVAIPTSVF
Sbjct: 302 MAKRSILVEGLKAVGFKVFPSSGTYFVVVDHTPFGHENDIAFCEYLVKEVGVVAIPTSVF 361
Query: 434 Y 434
Y
Sbjct: 362 Y 362
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388501844|gb|AFK38988.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/368 (86%), Positives = 345/368 (93%), Gaps = 1/368 (0%)
Query: 67 STVSTNQSDTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDF 126
+TVST T QKT+ P QVAKRLEKFKTTIFTQ+S LA+KHGAINLGQGFPNFDGP+F
Sbjct: 3 TTVSTQNDTTAQKTH-HPVQVAKRLEKFKTTIFTQISTLAVKHGAINLGQGFPNFDGPEF 61
Query: 127 VKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186
VK+AAIQAIRDGKNQYARG+GVP+ N AIA RFKKD+GL+VDPEKEVTVTSGCTEAIAAT
Sbjct: 62 VKEAAIQAIRDGKNQYARGYGVPDLNIAIAERFKKDTGLDVDPEKEVTVTSGCTEAIAAT 121
Query: 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAI 246
+LGLINPGDEVILFAPFYDSYEATLSMAGAK+K ITLRPPDFA+PIEEL+STISKNTRAI
Sbjct: 122 MLGLINPGDEVILFAPFYDSYEATLSMAGAKVKSITLRPPDFAVPIEELRSTISKNTRAI 181
Query: 247 LMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERT 306
L+NTPHNPTGKMFTREELN IASLCIENDVLVF+DEVYDKLAF+M+HIS+ASLPGM+ERT
Sbjct: 182 LLNTPHNPTGKMFTREELNTIASLCIENDVLVFTDEVYDKLAFDMEHISLASLPGMFERT 241
Query: 307 VTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYY 366
VTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAH+FLTFATS QWAA ALRAP++Y+
Sbjct: 242 VTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHAFLTFATSNANQWAAAVALRAPDSYF 301
Query: 367 EELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426
+LKRDY AK+AILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHE D+AFCEYLIKEVGV
Sbjct: 302 VDLKRDYLAKRAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHENDVAFCEYLIKEVGVA 361
Query: 427 AIPTSVFY 434
AIPTSVFY
Sbjct: 362 AIPTSVFY 369
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082262|ref|XP_002306622.1| predicted protein [Populus trichocarpa] gi|222856071|gb|EEE93618.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/378 (85%), Positives = 343/378 (90%), Gaps = 6/378 (1%)
Query: 63 MASLSTVSTNQSDTIQKTN------LQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQ 116
MAS +VST Q D N QP QVAKRLEKFKTTIFTQMS LAIK+GAINLGQ
Sbjct: 1 MASSPSVSTTQKDAFSTQNDSTRKTQQPLQVAKRLEKFKTTIFTQMSSLAIKYGAINLGQ 60
Query: 117 GFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVT 176
GFPNFDGP+FVK+AAIQAI+DGKNQYARG+GVP+ NSAIA RFKKD+GL VDP+KE+TVT
Sbjct: 61 GFPNFDGPEFVKEAAIQAIKDGKNQYARGYGVPDLNSAIAERFKKDTGLVVDPDKEITVT 120
Query: 177 SGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELK 236
SGCTEAIAATILGLINPGDEVI+FAPFYDSYEATLSMAGAKIK ITL PP F++PI+ELK
Sbjct: 121 SGCTEAIAATILGLINPGDEVIVFAPFYDSYEATLSMAGAKIKGITLCPPAFSVPIDELK 180
Query: 237 STISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISI 296
S I+KNTRAIL+NTPHNPTGKMFTREEL+ IASLCIENDVLVF+DEVYDKLAFE DHIS+
Sbjct: 181 SAITKNTRAILINTPHNPTGKMFTREELSTIASLCIENDVLVFTDEVYDKLAFETDHISM 240
Query: 297 ASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAAT 356
ASLPGMYERTVT+NSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAA
Sbjct: 241 ASLPGMYERTVTLNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAAA 300
Query: 357 AALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFC 416
ALRAPE+YY ELKRDY AKK ILVEGL AVGFKVFPSSGTYFVVVDHTPFG E DIAFC
Sbjct: 301 VALRAPESYYVELKRDYMAKKEILVEGLKAVGFKVFPSSGTYFVVVDHTPFGLENDIAFC 360
Query: 417 EYLIKEVGVVAIPTSVFY 434
EYLIKEVGVVAIPTSVFY
Sbjct: 361 EYLIKEVGVVAIPTSVFY 378
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515870|ref|XP_003526620.1| PREDICTED: aminotransferase YbdL-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/410 (78%), Positives = 364/410 (88%), Gaps = 11/410 (2%)
Query: 26 SSALLSFSKHLHTISITDSANTRRRGISTTCPRYPS-LMASLSTVSTNQSDTIQKTNLQP 84
SS L FS H H++ + T P++ S A++ST+ST Q+DT+ QP
Sbjct: 6 SSKFLGFSNHFHSLLAPSFSPT---------PKFSSSFSATMSTLST-QNDTVTHKTQQP 55
Query: 85 QQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYAR 144
Q+AKRLEKF+TTIFTQMS+LAIKHGAINLGQGFPNFDGP+FVK+AAIQAIRDGKNQYAR
Sbjct: 56 LQIAKRLEKFQTTIFTQMSLLAIKHGAINLGQGFPNFDGPEFVKEAAIQAIRDGKNQYAR 115
Query: 145 GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFY 204
G+GVP+ N AIA RFKKD+GL VDPEKE+TVTSGCTEAIAAT++GLINPGDEVI+FAPFY
Sbjct: 116 GYGVPDLNIAIAERFKKDTGLVVDPEKEITVTSGCTEAIAATMIGLINPGDEVIMFAPFY 175
Query: 205 DSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL 264
DSYEATLSMAGAK+K ITLRPPDFA+P+EELKSTISKNTRAIL+NTPHNPTGKMFTREEL
Sbjct: 176 DSYEATLSMAGAKVKGITLRPPDFAVPLEELKSTISKNTRAILINTPHNPTGKMFTREEL 235
Query: 265 NVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIG 324
N IASLCIENDVLVF+DEVYDKLAF+M+HIS+ASLPGM+ERTVT+NSLGKTFSLTGWKIG
Sbjct: 236 NCIASLCIENDVLVFTDEVYDKLAFDMEHISMASLPGMFERTVTLNSLGKTFSLTGWKIG 295
Query: 325 WAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGL 384
WAIAPPHL+WGVRQAH+FLTFAT+ P Q AA AALRAP++YY ELKRDY AK+AIL+EGL
Sbjct: 296 WAIAPPHLSWGVRQAHAFLTFATAHPFQCAAAAALRAPDSYYVELKRDYMAKRAILIEGL 355
Query: 385 NAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
AVGFKVFPSSGTYFVVVDHTPFG E D+AFCEYL+KEVGVVAIPTSVFY
Sbjct: 356 KAVGFKVFPSSGTYFVVVDHTPFGLENDVAFCEYLVKEVGVVAIPTSVFY 405
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509440|ref|XP_003523457.1| PREDICTED: aminotransferase YbdL-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/410 (79%), Positives = 362/410 (88%), Gaps = 11/410 (2%)
Query: 26 SSALLSFSKHLHTISITDSANTRRRGISTTCPRYPS-LMASLSTVSTNQSDTIQKTNLQP 84
SS L FS H + + T P++ S + A++ST ST Q+DT+ QP
Sbjct: 17 SSKFLGFSNLFHYLIAPSFSPT---------PKFSSSISATMSTFST-QNDTVIHKTQQP 66
Query: 85 QQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYAR 144
Q+AKRLEKF+TTIFTQMS+LAIKHGAINLGQGFPNFDGP+FVK+AAIQAIRDGKNQYAR
Sbjct: 67 LQIAKRLEKFQTTIFTQMSLLAIKHGAINLGQGFPNFDGPEFVKEAAIQAIRDGKNQYAR 126
Query: 145 GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFY 204
G+GVP+ N AIA RFKKD+GL VDPEKE+TVTSGCTEAIAAT++GLINPGDEVI+FAPFY
Sbjct: 127 GYGVPDLNIAIADRFKKDTGLVVDPEKEITVTSGCTEAIAATMIGLINPGDEVIMFAPFY 186
Query: 205 DSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL 264
DSYEATLSMAGAK+K ITLRPPDFA+P+EELKSTISKNTRAIL+NTPHNPTGKMFTREEL
Sbjct: 187 DSYEATLSMAGAKVKGITLRPPDFAVPLEELKSTISKNTRAILINTPHNPTGKMFTREEL 246
Query: 265 NVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIG 324
N IASLCIENDVLVF+DEVYDKLAF+MDHIS+ASLPGM+ERTVTMNSLGKTFSLTGWKIG
Sbjct: 247 NCIASLCIENDVLVFTDEVYDKLAFDMDHISMASLPGMFERTVTMNSLGKTFSLTGWKIG 306
Query: 325 WAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGL 384
WAIAPPHL+WGVRQAH+FLTFAT+ P Q AA AALRAP++YY ELKRDY AK+AILVEGL
Sbjct: 307 WAIAPPHLSWGVRQAHAFLTFATAHPFQCAAAAALRAPDSYYVELKRDYMAKRAILVEGL 366
Query: 385 NAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
AVGFKVFPSSGTYFVVVDHTPFG E D+AFCEYL+KEVGVVAIPTSVFY
Sbjct: 367 KAVGFKVFPSSGTYFVVVDHTPFGLENDVAFCEYLVKEVGVVAIPTSVFY 416
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 434 | ||||||
| TAIR|locus:2204660 | 440 | AT1G77670 [Arabidopsis thalian | 0.843 | 0.831 | 0.838 | 1.5e-168 | |
| UNIPROTKB|O53870 | 397 | dapC "Probable N-succinyldiami | 0.792 | 0.866 | 0.435 | 6.5e-74 | |
| UNIPROTKB|P77806 | 386 | ybdL "methionine-oxo-acid tran | 0.813 | 0.914 | 0.397 | 2.3e-71 | |
| UNIPROTKB|Q4K6V4 | 382 | ybdL "Aminotransferase YbdL" [ | 0.801 | 0.910 | 0.394 | 6.3e-69 | |
| UNIPROTKB|Q48LY9 | 382 | PSPPH_1325 "Aminotransferase, | 0.801 | 0.910 | 0.385 | 1.9e-67 | |
| MGI|MGI:2677849 | 455 | Ccbl2 "cysteine conjugate-beta | 0.822 | 0.784 | 0.392 | 9.7e-64 | |
| RGD|1359262 | 454 | Kat3 "kynurenine aminotransfer | 0.739 | 0.707 | 0.4 | 3e-62 | |
| UNIPROTKB|Q6YP21 | 454 | CCBL2 "Kynurenine--oxoglutarat | 0.774 | 0.740 | 0.393 | 2.1e-61 | |
| UNIPROTKB|E1C934 | 419 | CCBL2 "Uncharacterized protein | 0.723 | 0.749 | 0.401 | 8.1e-60 | |
| UNIPROTKB|Q0P5G4 | 455 | CCBL2 "Kynurenine--oxoglutarat | 0.725 | 0.692 | 0.392 | 1e-59 |
| TAIR|locus:2204660 AT1G77670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1639 (582.0 bits), Expect = 1.5e-168, P = 1.5e-168
Identities = 311/371 (83%), Positives = 344/371 (92%)
Query: 64 ASLSTVSTNQSDTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDG 123
A+++TVST Q+++ QK P QVAKRLEKFKTTIFTQMS+LA+KHGAINLGQGFPNFDG
Sbjct: 39 ATMTTVST-QNESTQK----PVQVAKRLEKFKTTIFTQMSILAVKHGAINLGQGFPNFDG 93
Query: 124 PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183
PDFVK+AAIQAI+DGKNQYARG+G+P+ NSAIA+RF++D+GL VDPEKEVTVTSGCTEAI
Sbjct: 94 PDFVKEAAIQAIKDGKNQYARGYGIPQLNSAIAARFREDTGLVVDPEKEVTVTSGCTEAI 153
Query: 184 AATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNT 243
AA +LGLINPGDEVILFAPFYDSYEATLSMAGAK+K ITLRPPDF+IP+EELK+ ++ T
Sbjct: 154 AAAMLGLINPGDEVILFAPFYDSYEATLSMAGAKVKGITLRPPDFSIPLEELKAAVTNKT 213
Query: 244 RAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303
RAILMNTPHNPTGKMFTREEL IASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY
Sbjct: 214 RAILMNTPHNPTGKMFTREELETIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 273
Query: 304 ERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPE 363
ERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHS+LTFATSTP QWAA AAL+APE
Sbjct: 274 ERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSYLTFATSTPAQWAAVAALKAPE 333
Query: 364 TYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEV 423
+Y++ELKRDY+ KK LV+GL VGF VFPSSGTYFVV DHTPFG E D+AFCEYLI+EV
Sbjct: 334 SYFKELKRDYNVKKETLVKGLKEVGFTVFPSSGTYFVVADHTPFGMENDVAFCEYLIEEV 393
Query: 424 GVVAIPTSVFY 434
GVVAIPTSVFY
Sbjct: 394 GVVAIPTSVFY 404
|
|
| UNIPROTKB|O53870 dapC "Probable N-succinyldiaminopimelate aminotransferase DapC" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 151/347 (43%), Positives = 209/347 (60%)
Query: 90 RLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVP 149
RL + TT+F +MS LA + GA+NLGQGFP+ DGP + AA AI G NQY G G
Sbjct: 5 RLRPYATTVFAEMSALATRIGAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPPGPGSA 64
Query: 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA 209
AIA++ ++ G++ DPE EV VT G TEAIAA +LGL+ PG EV+L PFYDSY
Sbjct: 65 PLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSP 124
Query: 210 TLSMAGAKIKCITLRPPD--FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267
++MAGA + L P FA+ + L+ ++ TRA+++N+PHNPTG + + EL I
Sbjct: 125 VVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAI 184
Query: 268 ASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWA 326
A + + +++V +DEVY+ L F+ H+ +A GM ERT+T++S K F+ TGWKIGWA
Sbjct: 185 AEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWA 244
Query: 327 IAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA 386
P L GVR A +L++ P Q A AL + + L+ A++ L GL
Sbjct: 245 CGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTE 304
Query: 387 VGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
+GF V S GTYF+ D P G++ FC L ++VGV AIP S F
Sbjct: 305 IGFAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAF 351
|
|
| UNIPROTKB|P77806 ybdL "methionine-oxo-acid transaminase, PLP-dependent" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
Identities = 141/355 (39%), Positives = 216/355 (60%)
Query: 80 TNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGK 139
TN P +L + TTIFTQMS LA +H AINL QGFP+FDGP ++++ + G
Sbjct: 2 TN-NPLIPQSKLPQLGTTIFTQMSALAQQHQAINLSQGFPDFDGPRYLQERLAHHVAQGA 60
Query: 140 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVIL 199
NQYA GV AIA + ++ G + D + ++TVT+G TEA+ A I L+ GDEVI
Sbjct: 61 NQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVIC 120
Query: 200 FAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMF 259
F P YDSY ++++G +K + L+PP F + +E + +S+ TR +++NTPHNP+ ++
Sbjct: 121 FDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVW 180
Query: 260 TREELNVIASLCIENDVLVFSDEVYDKLAF-EMDHISIASLPGMYERTVTMNSLGKTFSL 318
+ + + +++ V SDEVY+ + F + H S+ + P + ER V ++S GKT+ +
Sbjct: 181 QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHM 240
Query: 319 TGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKA 378
TGWK+G+ +AP ++ +R+ H +LTF+ +TP Q A LRA +Y L Y K+
Sbjct: 241 TGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRD 300
Query: 379 ILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
ILV LN ++ P GTYF++VD++ D+ FC++L +E GV AIP SVF
Sbjct: 301 ILVNALNESRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVF 355
|
|
| UNIPROTKB|Q4K6V4 ybdL "Aminotransferase YbdL" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 138/350 (39%), Positives = 216/350 (61%)
Query: 87 VAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGH 146
+ +L TTIFTQMS LA++ GA+NL QGFP+FDGP ++DA +G NQYA
Sbjct: 2 IISKLPNVGTTIFTQMSQLAVETGALNLSQGFPDFDGPQALRDALGWHAANGHNQYAPMT 61
Query: 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDS 206
G+P +A++ + G++VD + EVT+T G T+AI I +I GDEVI+F P YDS
Sbjct: 62 GLPALRQQVAAKIARSYGVQVDADAEVTITPGATQAIFCAIQAVIQRGDEVIVFDPSYDS 121
Query: 207 YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266
YE ++ +AG + + L FA+ ++L +S TR I++N+PHNP+G + +R EL+
Sbjct: 122 YEPSVELAGGRCVHVPLAGQGFALDWQKLGEALSPRTRMIILNSPHNPSGALISRAELDQ 181
Query: 267 IASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGW 325
+A+L + D+ + SDEVY+ L F+ + H+S+ + +Y+R ++S GKT+ +TGWK G+
Sbjct: 182 LAALIRDRDIYLVSDEVYEHLVFDGVPHVSVLAHEELYQRAFVVSSFGKTYHVTGWKTGY 241
Query: 326 AIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLN 385
+APP L+ +R+ H +++F TP+Q+A + + EEL Y AK+ + + L+
Sbjct: 242 VVAPPALSAELRKVHQYVSFCGVTPLQYALADFMAEHPEHVEELPAFYQAKRDLFCDLLS 301
Query: 386 AVGFKVFPSSGTYFVVVDHTPFGHE-TDIAFCEYLIKEVGVVAIPTSVFY 434
A F SGTYF +VD++ + D+ ++ +E GV AIP SVFY
Sbjct: 302 ASRFSFNRVSGTYFQLVDYSQIRPDLNDVDMAIWMTREHGVAAIPVSVFY 351
|
|
| UNIPROTKB|Q48LY9 PSPPH_1325 "Aminotransferase, classes I and II" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 135/350 (38%), Positives = 209/350 (59%)
Query: 87 VAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGH 146
+ +L TTIFT MS LA + GAINL QGFP+FDGP ++DA + + G NQY+
Sbjct: 2 IDSKLPNVGTTIFTVMSQLAAETGAINLSQGFPDFDGPQALRDAVCRHVTQGHNQYSPMT 61
Query: 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDS 206
G+P +A++ + G EV+P+ E+T+T G T+AI I +I GDEVI+F P YDS
Sbjct: 62 GLPALRQQVAAKIARSYGREVNPDSEITITPGATQAIFCAIHSVIRTGDEVIIFDPCYDS 121
Query: 207 YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266
YE + +AG + + L DF+I ++L +S TR I++N+PHNP+G + +R EL+
Sbjct: 122 YEPAVELAGGRCVHVQLGLDDFSIDWQKLSDALSPRTRMIVINSPHNPSGALISRAELDR 181
Query: 267 IASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGW 325
+A+L + D+ + SDEVY+ L F+ ++S+ +Y+R ++S GKT+ +TGWK G+
Sbjct: 182 LAALIADRDIYLLSDEVYEHLVFDGARNVSVLDHEALYQRAFVVSSFGKTYHVTGWKTGY 241
Query: 326 AIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLN 385
+APP LT +R+ H +++F TP+Q+A + + +EL Y AK+ L
Sbjct: 242 VVAPPALTSELRKVHQYVSFCGVTPLQYALADFMAEHPEHVDELPGFYQAKRDFFCGHLA 301
Query: 386 AVGFKVFPSSGTYFVVVDHTPFGHE-TDIAFCEYLIKEVGVVAIPTSVFY 434
F P GTYF +VD++ + D+ ++ +E GV +IP SVFY
Sbjct: 302 ESRFSFRPVGGTYFQLVDYSQIRPDLNDVDMALWMTREHGVASIPISVFY 351
|
|
| MGI|MGI:2677849 Ccbl2 "cysteine conjugate-beta lyase 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 150/382 (39%), Positives = 215/382 (56%)
Query: 48 RRRGISTTCPRYPSLMASLSTVSTNQSDTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAI 107
+RR IS C P + S+ T K L+ + AKR+E + ++ + + LA
Sbjct: 5 QRRLISLGCRSKP-IKTIYSSSKVLGLCTSAKMALKFKN-AKRIEGLDSNVWVEFTKLAA 62
Query: 108 KHGAINLGQGFPNFDGPDFVKDAAIQA-IRDGKNQYARGHGVPEFNSAIASRFKKDSGLE 166
+NLGQGFP+ P +VK+ +A D NQY RG G P A++ + K +
Sbjct: 63 DPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQ 122
Query: 167 VDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP- 225
+DP +E+ V G ++ +I GL++PGDEVI+ PFYD YE + MAGA I LR
Sbjct: 123 IDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSK 182
Query: 226 P---------DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDV 276
P D+ EL+S S T+AI++NTPHNP GK++TR+EL VIA LC+++D
Sbjct: 183 PTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDT 242
Query: 277 LVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG 335
L SDEVY+ L + H+ IA+LPGM+ERT+T+ S GKTFS+TGWK+GW+I P HL
Sbjct: 243 LCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPAHLIKH 302
Query: 336 VR--QAHSFLTFATSTPMQ-------WAATAALRAPETYYEELKRDYSAKKAILVEGLNA 386
++ Q +SF T AT P+Q W + PE Y+ L ++ K+ +V LN+
Sbjct: 303 LQTVQQNSFYTCAT--PLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNS 360
Query: 387 VGFKVFPSSGTYFVVVDHTPFG 408
VG K G YF++ D + G
Sbjct: 361 VGLKPIVPDGGYFIIADVSSLG 382
|
|
| RGD|1359262 Kat3 "kynurenine aminotransferase III" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 136/340 (40%), Positives = 194/340 (57%)
Query: 88 AKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQA-IRDGKNQYARGH 146
AKR+E ++ + + LA +NLGQGFP+ P +V++ +A D NQY RG
Sbjct: 42 AKRIEGLDQNVWVEFTKLAADPSVVNLGQGFPDITLPSYVQEELSKAAFIDNLNQYTRGF 101
Query: 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDS 206
G P A++ + K ++DP +E+ VT G ++ I GL++PGDEVI+ PFYD
Sbjct: 102 GHPSLVKALSCLYGKIYQKQIDPNEEILVTVGGYGSLFNAIQGLVDPGDEVIIMVPFYDC 161
Query: 207 YEATLSMAGAKIKCITLRPP----------DFAIPIEELKSTISKNTRAILMNTPHNPTG 256
YE + MAGA I LR D+ +EL+S S T+AI++NTPHNP G
Sbjct: 162 YEPMVKMAGAVPVFIPLRSKRTDGMKWTSSDWTFNPQELESKFSSKTKAIILNTPHNPIG 221
Query: 257 KMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKT 315
K++TREEL VIA LCI++D L SDEVY+ L + HI +ASLPGM++RT+T+ S GKT
Sbjct: 222 KVYTREELQVIADLCIKHDTLCISDEVYEWLVYTGHKHIKVASLPGMWDRTLTIGSAGKT 281
Query: 316 FSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQ-------WAATAALRAPETYYEE 368
FS+TGWK+GW+I P HL +R + +TP+Q W + PE Y+
Sbjct: 282 FSVTGWKLGWSIGPGHLIKHLRTVQQTSVYTCATPLQAALAEAFWIDIKRMDDPECYFNS 341
Query: 369 LKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFG 408
L ++ K+ + LN+VG K G YF++ D + G
Sbjct: 342 LPKELEVKRDRMACLLNSVGLKPIIPDGGYFIIADVSSLG 381
|
|
| UNIPROTKB|Q6YP21 CCBL2 "Kynurenine--oxoglutarate transaminase 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 142/361 (39%), Positives = 206/361 (57%)
Query: 66 LSTVSTNQS---DTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFD 122
L T+S+++ T K +L+ AKR+E + ++ + + LA +NLGQGFP+
Sbjct: 18 LKTISSSKILGFSTSAKMSLKFTN-AKRIEGLDSNVWIEFTKLAADPSVVNLGQGFPDIS 76
Query: 123 GPDFVKD--AAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180
P +VK+ + I AI D NQY RG G P A++ ++K ++D KE+ VT G
Sbjct: 77 PPTYVKEELSKIAAI-DSLNQYTRGFGHPSLVKALSYLYEKLYQKQIDSNKEILVTVGAY 135
Query: 181 EAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-P---------DFAI 230
++ TI LI+ GDEVIL PFYD YE + MAGA I LR P D+ +
Sbjct: 136 GSLFNTIQALIDEGDEVILIVPFYDCYEPMVRMAGATPVFIPLRSKPVYGKRWSSSDWTL 195
Query: 231 PIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE 290
+EL+S + T+AI++NTPHNP GK++ REEL VIA LCI+ D L SDEVY+ L +
Sbjct: 196 DPQELESKFNSKTKAIILNTPHNPLGKVYNREELQVIADLCIKYDTLCISDEVYEWLVYS 255
Query: 291 MD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATST 349
+ H+ IA+ PGM+ERT+T+ S GKTFS+TGWK+GW+I P HL ++ + +T
Sbjct: 256 GNKHLKIATFPGMWERTITIGSAGKTFSVTGWKLGWSIGPNHLIKHLQTVQQNTIYTCAT 315
Query: 350 PMQ-------WAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVV 402
P+Q W + PE Y+ L ++ K+ +V L +VG K G YF++
Sbjct: 316 PLQEALAQAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLESVGLKPIVPDGGYFIIA 375
Query: 403 D 403
D
Sbjct: 376 D 376
|
|
| UNIPROTKB|E1C934 CCBL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 134/334 (40%), Positives = 196/334 (58%)
Query: 89 KRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIR-DGKNQYARGHG 147
+R+E + ++ + + +A +NLGQG P+ P +VK+ +A D NQY RG G
Sbjct: 9 RRIEGLDSNVWVEFTKVAADPSIVNLGQGLPDICPPSYVKEELAKAAAVDRLNQYTRGFG 68
Query: 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSY 207
P A++ +++ G ++DP ++ VT G ++ +TI LI GDEVI+ PFYD Y
Sbjct: 69 HPSLVKALSQVYERVCGRKIDPLTDILVTVGGYGSLFSTIQALIEEGDEVIIIEPFYDCY 128
Query: 208 EATLSMAGAKIKCITLR---------PPDFAIPIEELKSTISKNTRAILMNTPHNPTGKM 258
E + MAGAK I LR D+ + EL S + T+AI++NTPHNP GK+
Sbjct: 129 EPMVKMAGAKPVFIPLRYKNGGNSASSADWILDPAELASKFNSKTKAIILNTPHNPIGKV 188
Query: 259 FTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFS 317
FTREEL VIA LCI++D L SDEVY+ L ++ + HI IA+LPGM+ERT+T+ S GKT+S
Sbjct: 189 FTREELQVIADLCIKHDTLCISDEVYEWLVYKGNKHIKIATLPGMWERTITIGSAGKTYS 248
Query: 318 LTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRA-------PETYYEELK 370
+TGWK+GW+I P +L ++ H + TP+Q A AL P+ Y+ L
Sbjct: 249 VTGWKLGWSIGPQNLIKHLQVVHQNTLYTCPTPLQEALAQALWVDYKRMDDPDCYFYSLP 308
Query: 371 RDYSAKKAILVEGLNAVGFK-VFPSSGTYFVVVD 403
R+ +K+ + + L VG V P G YF++VD
Sbjct: 309 RELESKRDRMAQLLQEVGLTPVIPEGG-YFMIVD 341
|
|
| UNIPROTKB|Q0P5G4 CCBL2 "Kynurenine--oxoglutarate transaminase 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 132/336 (39%), Positives = 194/336 (57%)
Query: 88 AKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKD--AAIQAIRDGKNQYARG 145
AKR+E + I+ + + LA +NLGQG P+ P +VK+ + I AI D NQY RG
Sbjct: 42 AKRIEGLDSNIWIEFTKLAADPSVVNLGQGLPDISPPVYVKEELSKIAAI-DNLNQYTRG 100
Query: 146 HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYD 205
G P A++ ++K +++P +E+ VT G ++ I GLI+ GDEVI+ PF+D
Sbjct: 101 FGHPSLVKALSCLYEKFYHNKINPNEEILVTVGAYGSLFNAIQGLIDEGDEVIVIVPFFD 160
Query: 206 SYEATLSMAGAKIKCITLR-PP---------DFAIPIEELKSTISKNTRAILMNTPHNPT 255
YE+ + MAGA + LR P D+ + +EL S + T+AI++NTPHNP
Sbjct: 161 CYESMVRMAGATPVFVPLRCKPVDGKKCSSSDWTLDPQELASKFNSKTKAIILNTPHNPL 220
Query: 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGK 314
GK++T+EEL VIA LCI+ D L SDEVY+ L + + H IA+ PGM+ERT+T+ S GK
Sbjct: 221 GKVYTKEELQVIADLCIKYDTLCISDEVYEWLVYTGNKHFKIATFPGMWERTITIGSAGK 280
Query: 315 TFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQ-------WAATAALRAPETYYE 367
TFS+TGWK+GW+I P HL ++ + +TP+Q W + PE Y+
Sbjct: 281 TFSVTGWKLGWSIGPKHLIKHLQTVQQNTVYTCATPLQEALAQAFWIDIKRMDDPECYFN 340
Query: 368 ELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVD 403
L ++ K+ +V L +VG K G YF++ D
Sbjct: 341 SLPKELEVKRDRMVHLLESVGLKSIVPDGGYFIIAD 376
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7T3E5 | KAT3_DANRE | 2, ., 6, ., 1, ., 6, 3 | 0.3427 | 0.8870 | 0.8555 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 434 | |||
| PLN00175 | 413 | PLN00175, PLN00175, aminotransferase family protei | 0.0 | |
| PRK07777 | 387 | PRK07777, PRK07777, aminotransferase; Validated | 1e-160 | |
| PRK08912 | 387 | PRK08912, PRK08912, hypothetical protein; Provisio | 1e-149 | |
| PRK09082 | 386 | PRK09082, PRK09082, methionine aminotransferase; V | 1e-133 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 1e-113 | |
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 9e-96 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 3e-95 | |
| PRK12414 | 384 | PRK12414, PRK12414, putative aminotransferase; Pro | 3e-94 | |
| PRK07683 | 387 | PRK07683, PRK07683, aminotransferase A; Validated | 7e-66 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 3e-65 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 1e-64 | |
| PRK07309 | 391 | PRK07309, PRK07309, aromatic amino acid aminotrans | 3e-64 | |
| PRK06348 | 384 | PRK06348, PRK06348, aspartate aminotransferase; Pr | 8e-61 | |
| TIGR03540 | 383 | TIGR03540, DapC_direct, LL-diaminopimelate aminotr | 8e-58 | |
| PRK08361 | 391 | PRK08361, PRK08361, aspartate aminotransferase; Pr | 1e-55 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 1e-55 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 1e-54 | |
| PRK08363 | 398 | PRK08363, PRK08363, alanine aminotransferase; Vali | 3e-53 | |
| PRK06107 | 402 | PRK06107, PRK06107, aspartate aminotransferase; Pr | 2e-52 | |
| PRK06108 | 382 | PRK06108, PRK06108, aspartate aminotransferase; Pr | 1e-51 | |
| PRK07681 | 399 | PRK07681, PRK07681, aspartate aminotransferase; Pr | 1e-47 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 9e-46 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 2e-45 | |
| PRK05942 | 394 | PRK05942, PRK05942, aspartate aminotransferase; Pr | 4e-44 | |
| TIGR01265 | 403 | TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine | 2e-42 | |
| PRK09148 | 405 | PRK09148, PRK09148, aminotransferase; Validated | 4e-41 | |
| PRK08960 | 387 | PRK08960, PRK08960, hypothetical protein; Provisio | 5e-41 | |
| PRK08175 | 395 | PRK08175, PRK08175, aminotransferase; Validated | 7e-41 | |
| PRK08068 | 389 | PRK08068, PRK08068, transaminase; Reviewed | 7e-40 | |
| PRK07337 | 388 | PRK07337, PRK07337, aminotransferase; Validated | 2e-38 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 6e-37 | |
| PRK07550 | 386 | PRK07550, PRK07550, hypothetical protein; Provisio | 2e-35 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 3e-35 | |
| TIGR03537 | 350 | TIGR03537, DapC, succinyldiaminopimelate transamin | 5e-35 | |
| PRK07366 | 388 | PRK07366, PRK07366, succinyldiaminopimelate transa | 3e-34 | |
| TIGR04350 | 384 | TIGR04350, C_S_lyase_PatB, putative C-S lyase | 4e-34 | |
| PRK06290 | 410 | PRK06290, PRK06290, aspartate aminotransferase; Pr | 6e-34 | |
| TIGR01264 | 401 | TIGR01264, tyr_amTase_E, tyrosine aminotransferase | 1e-31 | |
| PRK00950 | 361 | PRK00950, PRK00950, histidinol-phosphate aminotran | 1e-29 | |
| PRK09265 | 404 | PRK09265, PRK09265, aminotransferase AlaT; Validat | 2e-29 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 3e-29 | |
| TIGR01141 | 346 | TIGR01141, hisC, histidinol-phosphate aminotransfe | 3e-29 | |
| COG1168 | 388 | COG1168, MalY, Bifunctional PLP-dependent enzyme w | 3e-28 | |
| PRK06225 | 380 | PRK06225, PRK06225, aspartate aminotransferase; Pr | 8e-28 | |
| PRK08636 | 403 | PRK08636, PRK08636, aspartate aminotransferase; Pr | 3e-27 | |
| TIGR03539 | 357 | TIGR03539, DapC_actino, succinyldiaminopimelate tr | 6e-26 | |
| PTZ00433 | 412 | PTZ00433, PTZ00433, tyrosine aminotransferase; Pro | 9e-26 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 2e-25 | |
| PLN00145 | 430 | PLN00145, PLN00145, tyrosine/nicotianamine aminotr | 9e-25 | |
| PRK13355 | 517 | PRK13355, PRK13355, bifunctional HTH-domain contai | 6e-24 | |
| TIGR03538 | 393 | TIGR03538, DapC_gpp, succinyldiaminopimelate trans | 2e-23 | |
| PRK07865 | 364 | PRK07865, PRK07865, N-succinyldiaminopimelate amin | 1e-22 | |
| TIGR01140 | 330 | TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha | 2e-22 | |
| PLN00143 | 409 | PLN00143, PLN00143, tyrosine/nicotianamine aminotr | 2e-22 | |
| PLN02187 | 462 | PLN02187, PLN02187, rooty/superroot1 | 9e-22 | |
| PLN02656 | 409 | PLN02656, PLN02656, tyrosine transaminase | 2e-20 | |
| PRK02731 | 367 | PRK02731, PRK02731, histidinol-phosphate aminotran | 1e-19 | |
| PRK03321 | 352 | PRK03321, PRK03321, putative aminotransferase; Pro | 6e-18 | |
| PRK09147 | 396 | PRK09147, PRK09147, succinyldiaminopimelate transa | 4e-16 | |
| TIGR03542 | 402 | TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr | 4e-16 | |
| PRK07392 | 360 | PRK07392, PRK07392, threonine-phosphate decarboxyl | 4e-16 | |
| PLN03026 | 380 | PLN03026, PLN03026, histidinol-phosphate aminotran | 6e-15 | |
| PRK07908 | 349 | PRK07908, PRK07908, hypothetical protein; Provisio | 7e-15 | |
| PRK05839 | 374 | PRK05839, PRK05839, hypothetical protein; Provisio | 2e-14 | |
| PLN02450 | 468 | PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl | 2e-14 | |
| PLN02607 | 447 | PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl | 3e-14 | |
| PRK06358 | 354 | PRK06358, PRK06358, threonine-phosphate decarboxyl | 3e-14 | |
| PRK03158 | 359 | PRK03158, PRK03158, histidinol-phosphate aminotran | 3e-14 | |
| PTZ00377 | 481 | PTZ00377, PTZ00377, alanine aminotransferase; Prov | 8e-13 | |
| PRK06207 | 405 | PRK06207, PRK06207, aspartate aminotransferase; Pr | 3e-12 | |
| PRK14807 | 351 | PRK14807, PRK14807, histidinol-phosphate aminotran | 4e-12 | |
| PRK05166 | 371 | PRK05166, PRK05166, histidinol-phosphate aminotran | 5e-11 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 3e-10 | |
| PRK08354 | 311 | PRK08354, PRK08354, putative aminotransferase; Pro | 4e-10 | |
| PRK05387 | 353 | PRK05387, PRK05387, histidinol-phosphate aminotran | 5e-10 | |
| PRK07590 | 409 | PRK07590, PRK07590, L,L-diaminopimelate aminotrans | 8e-10 | |
| PRK06855 | 433 | PRK06855, PRK06855, aminotransferase; Validated | 1e-09 | |
| PLN02376 | 496 | PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl | 2e-09 | |
| PRK14808 | 335 | PRK14808, PRK14808, histidinol-phosphate aminotran | 3e-09 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 4e-09 | |
| PRK04635 | 354 | PRK04635, PRK04635, histidinol-phosphate aminotran | 5e-09 | |
| PLN02368 | 407 | PLN02368, PLN02368, alanine transaminase | 6e-09 | |
| PRK08637 | 388 | PRK08637, PRK08637, hypothetical protein; Provisio | 8e-09 | |
| PRK01533 | 366 | PRK01533, PRK01533, histidinol-phosphate aminotran | 8e-09 | |
| PRK14809 | 357 | PRK14809, PRK14809, histidinol-phosphate aminotran | 9e-09 | |
| PRK03967 | 337 | PRK03967, PRK03967, histidinol-phosphate aminotran | 9e-09 | |
| cd00614 | 369 | cd00614, CGS_like, CGS_like: Cystathionine gamma-s | 2e-08 | |
| PRK01688 | 351 | PRK01688, PRK01688, histidinol-phosphate aminotran | 4e-08 | |
| PRK02610 | 374 | PRK02610, PRK02610, histidinol-phosphate aminotran | 1e-07 | |
| PRK09105 | 370 | PRK09105, PRK09105, putative aminotransferase; Pro | 2e-07 | |
| PRK03317 | 368 | PRK03317, PRK03317, histidinol-phosphate aminotran | 3e-07 | |
| PRK04781 | 364 | PRK04781, PRK04781, histidinol-phosphate aminotran | 3e-07 | |
| TIGR01328 | 391 | TIGR01328, met_gam_lyase, methionine gamma-lyase | 3e-07 | |
| cd00616 | 352 | cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid s | 8e-07 | |
| pfam01053 | 382 | pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP | 2e-06 | |
| PRK08056 | 356 | PRK08056, PRK08056, threonine-phosphate decarboxyl | 4e-06 | |
| COG1448 | 396 | COG1448, TyrB, Aspartate/tyrosine/aromatic aminotr | 6e-06 | |
| COG0626 | 396 | COG0626, MetC, Cystathionine beta-lyases/cystathio | 1e-05 | |
| COG0399 | 374 | COG0399, WecE, Predicted pyridoxal phosphate-depen | 2e-05 | |
| PLN02231 | 534 | PLN02231, PLN02231, alanine transaminase | 2e-05 | |
| pfam01041 | 362 | pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS a | 2e-05 | |
| COG0075 | 383 | COG0075, COG0075, Serine-pyruvate aminotransferase | 6e-05 | |
| PRK07503 | 403 | PRK07503, PRK07503, methionine gamma-lyase; Provis | 7e-05 | |
| TIGR01977 | 376 | TIGR01977, am_tr_V_EF2568, cysteine desulfurase fa | 9e-05 | |
| PRK09440 | 416 | PRK09440, avtA, valine--pyruvate transaminase; Pro | 1e-04 | |
| TIGR01976 | 397 | TIGR01976, am_tr_V_VC1184, cysteine desulfurase fa | 1e-04 | |
| TIGR01979 | 403 | TIGR01979, sufS, cysteine desulfurases, SufSfamily | 4e-04 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 4e-04 | |
| PRK06425 | 332 | PRK06425, PRK06425, histidinol-phosphate aminotran | 5e-04 | |
| TIGR03235 | 353 | TIGR03235, DNA_S_dndA, cysteine desulfurase DndA | 7e-04 | |
| TIGR02379 | 376 | TIGR02379, ECA_wecE, TDP-4-keto-6-deoxy-D-glucose | 7e-04 | |
| PRK04870 | 356 | PRK04870, PRK04870, histidinol-phosphate aminotran | 8e-04 | |
| PRK06767 | 386 | PRK06767, PRK06767, methionine gamma-lyase; Provis | 0.001 | |
| PRK05664 | 330 | PRK05664, PRK05664, threonine-phosphate decarboxyl | 0.001 | |
| PRK06234 | 400 | PRK06234, PRK06234, methionine gamma-lyase; Provis | 0.001 | |
| PRK08247 | 366 | PRK08247, PRK08247, cystathionine gamma-synthase; | 0.002 | |
| cd06451 | 356 | cd06451, AGAT_like, Alanine-glyoxylate aminotransf | 0.002 | |
| COG3977 | 417 | COG3977, COG3977, Alanine-alpha-ketoisovalerate (o | 0.002 | |
| PRK15481 | 431 | PRK15481, PRK15481, transcriptional regulatory pro | 0.003 | |
| cd06453 | 373 | cd06453, SufS_like, Cysteine desulfurase (SufS)-li | 0.003 | |
| PRK06959 | 339 | PRK06959, PRK06959, putative threonine-phosphate d | 0.004 |
| >gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Score = 743 bits (1919), Expect = 0.0
Identities = 316/379 (83%), Positives = 335/379 (88%), Gaps = 6/379 (1%)
Query: 62 LMASLSTVSTNQSDTI------QKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLG 115
+ A+ ST D + QP QVAKRLEKFKTTIFTQMS LAIKHGAINLG
Sbjct: 1 MAATSQKASTVGKDAASAQAAATASTQQPLQVAKRLEKFKTTIFTQMSSLAIKHGAINLG 60
Query: 116 QGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTV 175
QGFPNFDGPDFVK+AAIQAIRDGKNQYARG GVPE NSAIA RFKKD+GL VDPEKEVTV
Sbjct: 61 QGFPNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTV 120
Query: 176 TSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEEL 235
TSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIK +TLRPPDFA+P +EL
Sbjct: 121 TSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDEL 180
Query: 236 KSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHIS 295
K+ + TRAIL+NTPHNPTGKMFTREEL +IASLC ENDVL F+DEVYDKLAFE DHIS
Sbjct: 181 KAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHIS 240
Query: 296 IASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAA 355
+ASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT+TPMQWAA
Sbjct: 241 MASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAA 300
Query: 356 TAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAF 415
AALRAPE+YYEELKRDYSAKK ILVEGL VGFKV+PSSGTYFV+VDHTPFG E DIAF
Sbjct: 301 VAALRAPESYYEELKRDYSAKKDILVEGLKEVGFKVYPSSGTYFVMVDHTPFGFENDIAF 360
Query: 416 CEYLIKEVGVVAIPTSVFY 434
CEYLI+EVGV AIP SVFY
Sbjct: 361 CEYLIEEVGVAAIPPSVFY 379
|
Length = 413 |
| >gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 456 bits (1176), Expect = e-160
Identities = 169/348 (48%), Positives = 228/348 (65%), Gaps = 3/348 (0%)
Query: 90 RLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVP 149
RL F TTIF +MS LA++ GA+NLGQGFP+ DGP + +AA +AI G NQY G G+P
Sbjct: 5 RLRPFGTTIFAEMSALAVRTGAVNLGQGFPDEDGPPEMLEAAQEAIAGGVNQYPPGPGIP 64
Query: 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA 209
E +AIA++ ++ GLE DP+ EV VT G TEAIAA +LGL+ PGDEV+L P+YDSY A
Sbjct: 65 ELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAA 124
Query: 210 TLSMAGAKIKCITLRPPD--FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267
++MAGA + L P FA+ ++ L++ ++ TRA+++N+PHNPTG + T EL I
Sbjct: 125 VIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAI 184
Query: 268 ASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWA 326
A L +E+D+LV +DEVY+ L F+ H+ +A+LPGM ERTVT++S KTF++TGWKIGWA
Sbjct: 185 AELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWA 244
Query: 327 IAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA 386
P L VR A +LT+ P Q A AL + + L+ AK+ L GL
Sbjct: 245 CGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAE 304
Query: 387 VGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
GF+V S+GTYF+ D P G++ FC L + VGV AIP SVFY
Sbjct: 305 AGFEVHDSAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFY 352
|
Length = 387 |
| >gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 428 bits (1103), Expect = e-149
Identities = 162/341 (47%), Positives = 216/341 (63%), Gaps = 2/341 (0%)
Query: 96 TTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAI 155
TTIF MS LA +HGAINLGQGFP+ GP+ V+ AA A+ DG NQY G+PE A+
Sbjct: 13 TTIFEVMSQLAREHGAINLGQGFPDDPGPEDVRRAAADALLDGSNQYPPMMGLPELRQAV 72
Query: 156 ASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAG 215
A+ + + GL++DPE EV VTSG TEA+AA +L L+ PGDEV+LF P YD+Y + AG
Sbjct: 73 AAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRAG 132
Query: 216 AKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIEND 275
+ + L PP + +P L + S T+A+L+N P NP GK+F REEL ++A C +D
Sbjct: 133 GVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHD 192
Query: 276 VLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTW 334
+ DEV++ + F+ HI + +LPGM ERTV + S GK FSLTGWK+G+ A P L
Sbjct: 193 AVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPLLR 252
Query: 335 GVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPS 394
+ +AH FLTF T +Q A L P+ Y+E ++ D + + L GL +GF V PS
Sbjct: 253 VLAKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRIGFPVLPS 312
Query: 395 SGTYFVVVDHTPFGH-ETDIAFCEYLIKEVGVVAIPTSVFY 434
GTYF+ VD P G E D+AFC L++E GV AIP S FY
Sbjct: 313 QGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFY 353
|
Length = 387 |
| >gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 387 bits (997), Expect = e-133
Identities = 148/352 (42%), Positives = 209/352 (59%), Gaps = 1/352 (0%)
Query: 84 PQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYA 143
P +L TTIFT MS LA +HGAINL QGFP+FDGP ++ +A A+ G NQY
Sbjct: 5 PLIPQSKLPNVGTTIFTVMSALAAEHGAINLSQGFPDFDGPPYLVEALAYAMAAGHNQYP 64
Query: 144 RGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPF 203
GV AIA++ + G + D + E+TVT+G TEA+ A IL L+ PGDEVI+F P
Sbjct: 65 PMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPS 124
Query: 204 YDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREE 263
YDSY + +AG + + L+PPDF + + + IS TR I++NTPHNP+G +++ +
Sbjct: 125 YDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAAD 184
Query: 264 LNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWK 322
+ + L D+ V SDEVY+ + F+ H S+ P + ER ++S GKT+ +TGWK
Sbjct: 185 MRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWK 244
Query: 323 IGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVE 382
+G+ +AP L+ R+ H + TF +TP Q A LRA +Y EL Y AK+
Sbjct: 245 VGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRA 304
Query: 383 GLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
L FK+ P GTYF +VD++ D+ FC++L +E GV AIP SVFY
Sbjct: 305 ALANSRFKLLPCEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFY 356
|
Length = 386 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 336 bits (863), Expect = e-113
Identities = 130/338 (38%), Positives = 204/338 (60%), Gaps = 10/338 (2%)
Query: 105 LAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSG 164
L K I+L G P+F P+ + +AAI+A+ +G Y G+PE AIA ++K+ G
Sbjct: 24 LKGKEDVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYG 83
Query: 165 LEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLR 224
L+VDPE+E+ VT+G EA+ L L+NPGDEV++ P Y SYEA + +AG K + L
Sbjct: 84 LDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLD 143
Query: 225 PP--DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDE 282
F +E+L++ I+ T+AI++N+P+NPTG ++++EEL I L E+D+++ SDE
Sbjct: 144 EEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDE 203
Query: 283 VYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP-HLTWGVRQAH 340
+Y++L ++ +H SI L G +RT+T+NS KT+ +TGW+IGW + PP L +R+
Sbjct: 204 IYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLK 263
Query: 341 SFLTFATSTPMQWAATAALRAPET--YYEELKRDYSAKKAILVEGLNAV-GFKVF-PSSG 396
S+LT TP Q+AA AAL P++ EE++ +Y ++ +LVE LN + G V P G
Sbjct: 264 SYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEG 323
Query: 397 TYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
+++ F + L++E GV +P S F
Sbjct: 324 AFYLFPKIPELL--DSEEFAKKLLEEAGVAVVPGSGFG 359
|
Length = 393 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 292 bits (751), Expect = 9e-96
Identities = 117/332 (35%), Positives = 203/332 (61%), Gaps = 14/332 (4%)
Query: 112 INLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEK 171
I+LG G P+FD P+ +K+AAI+A+ DGK +Y G+PE AIA++ K+D+GL+ DP
Sbjct: 34 ISLGAGEPDFDTPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPS- 92
Query: 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD-FAI 230
+V VT+G +A+ + L++PGDEVI+ AP++ SY + +AG + + F +
Sbjct: 93 QVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKL 152
Query: 231 PIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE 290
+E+L++ I+ T+A+++N+P NPTG +++ EEL IA + +E+D+ V SDE+Y+KL ++
Sbjct: 153 TVEQLEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYD 212
Query: 291 -MDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA---HSFLTF 345
+ SIASL P + +RT+T+N K +++TGW++G+A P L ++ S T
Sbjct: 213 GAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGPKEL---IKAMSKLQSHSTS 269
Query: 346 ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDH 404
++ Q+AA AAL P+ EE+++ + ++ ++V+GLN + G + G ++V +
Sbjct: 270 NPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNV 329
Query: 405 TPFG---HETDIAFCEYLIKEVGVVAIPTSVF 433
+ + F E L++E GV +P F
Sbjct: 330 SKLLGKSITDSLEFAEALLEEAGVAVVPGIAF 361
|
Length = 393 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 290 bits (743), Expect = 3e-95
Identities = 116/327 (35%), Positives = 175/327 (53%), Gaps = 8/327 (2%)
Query: 112 INLGQGFPNFDGPDFVKDAAIQ-AIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPE 170
I+L G P+F P V +A A+R G Y G+PE AIA + G++V PE
Sbjct: 1 IDLSIGEPDFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPE 60
Query: 171 KEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD-FA 229
E+ VT+G EA++ + L+NPGDEV++ P Y YEA +AGA++ + L F
Sbjct: 61 -EIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFL 119
Query: 230 IPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAF 289
+ +E L++ + T+ + +N P+NPTG + + EEL +A L ++ +L+ SDE Y +L +
Sbjct: 120 LDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVY 179
Query: 290 EMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP-HLTWGVRQAHSFLTFATS 348
+ + +L YER + + S KTF L G +IG+ IAPP L +++ + T S
Sbjct: 180 DGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPS 239
Query: 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVF-PSSGTYFVVVDHTPF 407
T Q AA AAL E + EEL+ Y ++ L+E L +G V SG +F+ +D
Sbjct: 240 TLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPE- 298
Query: 408 GHETDIAFCEYLIKEVGVVAIPTSVFY 434
D F E L+ E GVV P S F
Sbjct: 299 --GDDEEFLERLLLEAGVVVRPGSAFG 323
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 288 bits (738), Expect = 3e-94
Identities = 130/352 (36%), Positives = 197/352 (55%), Gaps = 2/352 (0%)
Query: 84 PQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYA 143
+L TTIFT + LA +H A+NL QG PNF + + +A+RDG NQYA
Sbjct: 4 ATAPRSKLPDVGTTIFTVIGQLAAQHDALNLSQGAPNFAPDPALVEGVARAMRDGHNQYA 63
Query: 144 RGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPF 203
G+ A+A + ++ G DP EVTV + +E + A I L++PGDEVI F P
Sbjct: 64 PMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFEPS 123
Query: 204 YDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREE 263
+DSY + + GA I L P DF + +E+ + I+ TR I++NTPHNP+ +F+ +
Sbjct: 124 FDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAAD 183
Query: 264 LNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWK 322
L +A L D+++ SDEVY+ + F+ H S+A + ER+V ++S GK++ +TGW+
Sbjct: 184 LARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWR 243
Query: 323 IGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVE 382
+G+ +AP L +R+ H F+ F+ TPMQ A AL P +Y L Y K+ +L
Sbjct: 244 VGYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYL-GLGAFYQRKRDLLAR 302
Query: 383 GLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
L F++ PS G++F++ F E+D F LI++ V IP S FY
Sbjct: 303 ELAGSRFELLPSEGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFY 354
|
Length = 384 |
| >gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 7e-66
Identities = 109/334 (32%), Positives = 172/334 (51%), Gaps = 2/334 (0%)
Query: 101 QMSMLAIKH-GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRF 159
Q S + + I+L G P+F P VK+AA +AI + Y G+ E A +
Sbjct: 19 QFSNMVQNYDNLISLTIGQPDFPTPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFV 78
Query: 160 KKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIK 219
K L PE E+ VT G +EAI ++ PG EVIL AP Y YE + + GAK
Sbjct: 79 KDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKPV 138
Query: 220 CITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVF 279
I R F + E L++ I++ TR +++ P NPTG ++EEL IA + + ++ V
Sbjct: 139 FIDTRSTGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVL 198
Query: 280 SDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA 339
SDE+Y +L +E H SIA P M E+T+ +N L K+ S+TGW+IG+ AP +L + +
Sbjct: 199 SDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSYLAKHILKV 258
Query: 340 HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYF 399
H + S+ Q+AA AL A + + ++ Y ++ + L ++G V +G ++
Sbjct: 259 HQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISMGLDVEKPTGAFY 318
Query: 400 VVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
+ F + F L++E G+ +P S F
Sbjct: 319 LFPSIGHFT-MSSFDFALDLVEEAGLAVVPGSAF 351
|
Length = 387 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 3e-65
Identities = 101/335 (30%), Positives = 154/335 (45%), Gaps = 17/335 (5%)
Query: 112 INLGQGFPNFDGPDF--VKDAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSGLEVD 168
INLG D V A A+ G N Y G+PE A+A + L++D
Sbjct: 4 INLGSNEYLGDSGTLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLGRSPVLKLD 63
Query: 169 PEKEVTVTSGCTEAI-AATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP- 226
E V SG I A L +NPGD +++ AP Y SY +AG ++ L
Sbjct: 64 REAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVVRYPLYSSN 123
Query: 227 DFAIPIEELKSTISKNT---RAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEV 283
DF + + L++ + + T + +L +PHNPTG + T EEL + L E+++L+ DE
Sbjct: 124 DFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEA 183
Query: 284 YDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSF 342
Y F +D ++ +L + + S K F L GW++G+ + + +R+
Sbjct: 184 YAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAVISQLRKLARP 243
Query: 343 LTFATSTPMQWAATAALRAPETYYEELK--RDYSAKKA-ILVEGLNAVGFKVFPSSGTYF 399
ST +Q AA AAL P EL+ R ++ L +GL A G V PS +F
Sbjct: 244 FYS--STHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAAGLSVLPSQAGFF 301
Query: 400 VVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
++ P E +A + L++EVGV P S F
Sbjct: 302 LLTGLDP---EAALALAQVLLEEVGVYVTPGSSFG 333
|
Length = 357 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 1e-64
Identities = 105/334 (31%), Positives = 174/334 (52%), Gaps = 20/334 (5%)
Query: 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDP 169
G I+LG G P+F P V++A+I+++ G Y G+ E IA KK + DP
Sbjct: 21 GVISLGVGEPDFVTPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDP 80
Query: 170 EKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAK-IKCITLRPPDF 228
E+ VT G ++A+ + +INPGDEV++ P + SY +++AG + T +F
Sbjct: 81 NDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEF 140
Query: 229 AIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLA 288
+ ++++ I+ T+AIL+ +P+NPTG + + EL IA + ++D++V SDE+Y +L
Sbjct: 141 KVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELT 200
Query: 289 FEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348
++ + S AS+ GM ERT+ ++ K F++TGW++G+ AP + + + + H +
Sbjct: 201 YDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQYSMMCAP 260
Query: 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG---------FKVFPSSGTYF 399
T Q+AA ALRA ++ Y ++ V N +G F FPS
Sbjct: 261 TMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEIGLTCHVPGGAFYAFPS----- 315
Query: 400 VVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
+ T E F E L+ E V +P SVF
Sbjct: 316 --ISSTGLSSE---EFAEQLLLEEKVAVVPGSVF 344
|
Length = 378 |
| >gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 211 bits (538), Expect = 3e-64
Identities = 107/329 (32%), Positives = 181/329 (55%), Gaps = 8/329 (2%)
Query: 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDP 169
G + L G P+F PD VK+AA +AI ++ Y G+ E A A K+ L+ P
Sbjct: 31 GILKLTLGEPDFTTPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAP 90
Query: 170 EKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFA 229
E E+ VT G TEA++A++ ++ PGD+V+L AP Y YE +++ GA+I I DF
Sbjct: 91 ENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFV 150
Query: 230 IPIEELKSTISK---NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDK 286
+ E L+ I + +A+++N P NPTG ++RE++ +A + + D+ V SDEVY +
Sbjct: 151 LTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSE 210
Query: 287 LAF-EMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTF 345
L + H+SIA + ++T+ +N L K+ ++TGW+IG AP T + ++H +L
Sbjct: 211 LTYTGEPHVSIAEY--LPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQYLVT 268
Query: 346 ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHT 405
A +T Q+AA AL + +K++Y ++ ++E + +GFK+ G +++
Sbjct: 269 AATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDLGFKIIKPDGAFYIFAK-I 327
Query: 406 PFGHETD-IAFCEYLIKEVGVVAIPTSVF 433
P G+ D F + ++ V IP + F
Sbjct: 328 PAGYNQDSFKFLQDFARKKAVAFIPGAAF 356
|
Length = 391 |
| >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (514), Expect = 8e-61
Identities = 105/350 (30%), Positives = 185/350 (52%), Gaps = 5/350 (1%)
Query: 87 VAKRLEKFKTTIFTQMSMLAIKH-GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARG 145
+AK+ ++ + I +++ LA K I+L G P+ + + +AA + + G +Y
Sbjct: 6 LAKKYQQMEVNIMAEIATLAKKFPDIIDLSLGDPDLITDESIINAAFEDAKKGHTRYTDS 65
Query: 146 HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYD 205
G E I + K+ L E+ T G + + +++PGDEVI+ P++
Sbjct: 66 GGDVELIEEIIKYYSKNYDLSFKR-NEIMATVGACHGMYLALQSILDPGDEVIIHEPYFT 124
Query: 206 SYEATLSMAGAK-IKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL 264
Y+ + M G K I T F I +++L++ I+ T+AI++N+P+NPTG +F++E L
Sbjct: 125 PYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETL 184
Query: 265 NVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIG 324
IA + IE D+ + SDEVYD +F D + +A+L GM ERT+T S K F++TGW+IG
Sbjct: 185 EEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIG 244
Query: 325 WAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGL 384
+ IAP ++ + + + F+ T Q AA AL+ +T +K ++ + + +
Sbjct: 245 YVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRI 304
Query: 385 NAVGF-KVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
++ + P G+ + ++ G + + FCE L+KE V+ IP F
Sbjct: 305 ESIPNLSLHPPKGSIYAFINIKKTG-LSSVEFCEKLLKEAHVLVIPGKAF 353
|
Length = 384 |
| >gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 8e-58
Identities = 102/357 (28%), Positives = 173/357 (48%), Gaps = 20/357 (5%)
Query: 86 QVAKRLEKFKTTIFTQMSML---AIKHGA--INLGQGFPNFDGPDFVKDAAIQAIRDGKN 140
++A R+E +F ++ G I+LG G P+ P + +A +A + +N
Sbjct: 1 KLADRIENLPPYLFAEIDKKKAEKKAEGVDVISLGIGDPDLPTPKHIVEALCKAAENPEN 60
Query: 141 -QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVIL 199
+Y G+ + A+A +K+ G+E+DPE EV G E IA L +NPGD V++
Sbjct: 61 HRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLV 120
Query: 200 FAPFYDSYEATLSMAGAKIKCITLRP-----PDF-AIPIEELKSTISKNTRAILMNTPHN 253
P Y Y AG + + L+ PDF AIP I+K + + +N P+N
Sbjct: 121 PDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIP-----EDIAKKAKLMFINYPNN 175
Query: 254 PTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSL 312
PTG + + + E +++V D Y ++ F+ S + G + + +SL
Sbjct: 176 PTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSL 235
Query: 313 GKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRD 372
KT+++TGW+IG A+ L G+ + + + +Q+AA AAL P+ +E+++
Sbjct: 236 SKTYNMTGWRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKI 295
Query: 373 YSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429
Y ++ +L+E L +G V T++V V P G+ T F L++E GVV P
Sbjct: 296 YQRRRDLLLEALKKIGIDVEKPKATFYVWVP-VPEGY-TSAEFAARLLEETGVVVTP 350
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 |
| >gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 1e-55
Identities = 107/328 (32%), Positives = 180/328 (54%), Gaps = 11/328 (3%)
Query: 112 INLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEK 171
I+LG G P+FD P +K+AA +A+ +G Y G+PE AIA +KK G++VD +
Sbjct: 36 ISLGIGEPDFDTPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVD- 94
Query: 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAI 230
V VT+G EA L+ GDEVI+ P + Y +A AK I LR +F
Sbjct: 95 NVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQP 154
Query: 231 PIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE 290
+EL I+K TR I++N P+NPTG +E IA + + ++ + SDE Y+ +E
Sbjct: 155 DPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYE 214
Query: 291 --MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348
+ I P + T+ NS KTF++TGW++G+ IAP + + + H+++ +
Sbjct: 215 GAKHYPMIKYAP---DNTILANSFSKTFAMTGWRLGFVIAPEQVIKDMIKLHAYIIGNVA 271
Query: 349 TPMQWAATAALRAPETY--YEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHT 405
+ +Q A ALR+ E++ EE++++Y+ ++ ++++ L + KVF G ++V +
Sbjct: 272 SFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANID 331
Query: 406 PFGHETDIAFCEYLIKEVGVVAIPTSVF 433
G ++ F E+L+++ VV IP + F
Sbjct: 332 ETGMSSE-DFAEWLLEKARVVVIPGTAF 358
|
Length = 391 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 1e-55
Identities = 92/299 (30%), Positives = 171/299 (57%), Gaps = 19/299 (6%)
Query: 113 NLGQGFPNFDGPDFVKDAAIQAIRDGKNQ---YARGHGVPEFNSAIASRFKKDSGLEVDP 169
N+GQ P+ P+ +AI++ + Y+ G+PE A A +KK G++V+P
Sbjct: 36 NIGQ--PDIKTPE----VFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKKW-GIDVEP 88
Query: 170 EKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD-F 228
+ E+ +T+G +EAI ++ + +PGDE+++ PFY +Y + AG KI +T + + F
Sbjct: 89 D-EILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGF 147
Query: 229 AIP-IEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKL 287
+P EE++ I+ T+AIL++ P NPTG ++T+EEL ++A + ++D+ + SDEVY +
Sbjct: 148 HLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREF 207
Query: 288 AFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA--PPHLTWGVRQAHSFLT 344
++ + + S SL G+ +R + ++S+ K +S G +IG I+ + ++ + L
Sbjct: 208 VYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQARL- 266
Query: 345 FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVV 402
+ T Q A A L PE+Y++E++ +Y ++ IL E LN + G G ++++
Sbjct: 267 -SPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFYIIA 324
|
Length = 397 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 1e-54
Identities = 111/357 (31%), Positives = 180/357 (50%), Gaps = 20/357 (5%)
Query: 86 QVAKRLEKFKTTIFTQMSML---AIKHGA--INLGQGFPNFDGPDFVKDAAIQAIRDGKN 140
++A R++ +F ++ I G I+LG G P+ PD + +A +A+ D +N
Sbjct: 3 KLADRIKNLPPYLFAEIDKKKAEKIARGVDVISLGIGDPDLPTPDHIIEAMCKAVEDPEN 62
Query: 141 -QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVIL 199
QY G+ EF A+A +K+ G+E+DPE EV G E IA L +NPGD V++
Sbjct: 63 HQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLV 122
Query: 200 FAPFYDSYEATLSMAGAKIKCITLRP-----PDF-AIPIEELKSTISKNTRAILMNTPHN 253
P Y Y+ AG + + L+ PD AIP + ++K + + +N P+N
Sbjct: 123 PDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPED-----VAKKAKLMFINYPNN 177
Query: 254 PTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH-ISIASLPGMYERTVTMNSL 312
PTG + E + + D++V D Y ++A++ S +PG + + +SL
Sbjct: 178 PTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSL 237
Query: 313 GKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRD 372
KT+++TGW+IG+A+ L G+ + S + +Q A AAL P+ EEL++
Sbjct: 238 SKTYNMTGWRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEVVEELRKI 297
Query: 373 YSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429
Y ++ ILVEGL +G +V P T++V P G+ T F L+ + GVV P
Sbjct: 298 YQERRDILVEGLRKLGLEVEPPKATFYVWAP-VPKGY-TSAEFATLLLDKAGVVVTP 352
|
Length = 385 |
| >gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 3e-53
Identities = 102/341 (29%), Positives = 169/341 (49%), Gaps = 30/341 (8%)
Query: 112 INLGQGFP---NFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVD 168
I L G P +F P+ +K+A +AI++G N Y G+PE AI R K+ +G+++
Sbjct: 33 IRLNIGDPVKFDFQPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDIT 92
Query: 169 PEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAK-IKCITLRPPD 227
P +V VT+ TEA+ L++PGDE+++ P Y Y + G ++ T+
Sbjct: 93 P-DDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEG 151
Query: 228 FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKL 287
+ I++++ I++ T+AI + P+NPTG ++ ++ L I + E+D+ V SDE+YD +
Sbjct: 152 WQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLM 211
Query: 288 AFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWA--IAPPHLTWGVRQAHSFLT- 344
+E H+S SL + MN L K + TGW++G+ + P VR+A L
Sbjct: 212 TYEGKHVSPGSLTKD-VPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLAR 270
Query: 345 --FATSTPMQWAATAALRAPETYYEELK------RDYSAKKAILVEGLNAV----GFKVF 392
+TP Q+AA A L P Y EE RDY K+ + G++ F +F
Sbjct: 271 IRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIF 330
Query: 393 PSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
P ++ P+ D F ++ E V+ + S F
Sbjct: 331 PR-------IEEGPWK--DDKEFVLDVLHEAHVLFVHGSGF 362
|
Length = 398 |
| >gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 2e-52
Identities = 102/340 (30%), Positives = 178/340 (52%), Gaps = 23/340 (6%)
Query: 112 INLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEK 171
++L G P+FD PD +K AA+ AI G+ +Y +G P AI ++ ++ +GL
Sbjct: 36 VDLTVGEPDFDTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYAD-N 94
Query: 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSY-EATLSMAGAKIKCITLRPPD--- 227
E+TV G +AI ++ + GDEVI+ AP++ SY + L+ G + + P+
Sbjct: 95 EITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLANDG---TPVIVACPEEQG 151
Query: 228 FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIEN-DVLVFSDEVYDK 286
F + E L++ I+ TR +++N P NPTG +++R EL +A + + + VLV +D++YD
Sbjct: 152 FKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDH 211
Query: 287 LAFE---MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL 343
+ F+ H+ +A+ P + +R + N + KT+++TGW+IG+A P L + + S
Sbjct: 212 IRFDDEPTPHL-LAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINKLQSQS 270
Query: 344 TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVV 402
+ S+ Q AA AAL +++ E Y ++ + LNA+ G G +++ V
Sbjct: 271 SSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGAFYLYV 330
Query: 403 D-------HTPFGH--ETDIAFCEYLIKEVGVVAIPTSVF 433
+ TP G ETD YL+ GV + + +
Sbjct: 331 NCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAY 370
|
Length = 402 |
| >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 177 bits (452), Expect = 1e-51
Identities = 95/320 (29%), Positives = 161/320 (50%), Gaps = 18/320 (5%)
Query: 124 PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183
PDF++DAA A+ DG+ Y G+PE A+A + G+ PE + VTS +A+
Sbjct: 39 PDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPE-RIAVTSSGVQAL 97
Query: 184 AATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD--FAIPIEELKSTISK 241
L+ PGDEV+ P + + A + GA++ C+ L + + ++ L + I+
Sbjct: 98 MLAAQALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITP 157
Query: 242 NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-----HISI 296
TRA+ +N+P+NPTG +R++L I + C + + + +DEVY++L + + I
Sbjct: 158 RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDI 217
Query: 297 ASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAAT 356
A P +R + +NS K +++TGW++GW +APP L + + + T + +Q AA
Sbjct: 218 AE-PD--DRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAV 274
Query: 357 AALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTY--FVVVDHTPFGHETDI 413
AAL E + EL + LV+ L A+ G +V G F + G +
Sbjct: 275 AALDEGEDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFFRIP----GVTDSL 330
Query: 414 AFCEYLIKEVGVVAIPTSVF 433
A + L+ E G+ P + F
Sbjct: 331 ALAKRLVDEAGLGLAPGTAF 350
|
Length = 382 |
| >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 1e-47
Identities = 96/354 (27%), Positives = 169/354 (47%), Gaps = 11/354 (3%)
Query: 88 AKRLEKFKTTIFTQMSML-----AIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQY 142
A R++ F+++IF+++ A H I+L G P+ DFV++ + K Y
Sbjct: 6 ATRMKAFQSSIFSELGAYKKEKIAAGHKMIDLSIGNPDMPPADFVREEMVHTANQ-KESY 64
Query: 143 ARG-HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFA 201
G+ EF+ A+ + + ++ +KEV + G + + + NPGD +++
Sbjct: 65 GYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPD 124
Query: 202 PFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFT 260
P Y +YE + MAGA + L+ DF +E + I+ + +++N P NP M
Sbjct: 125 PGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAH 184
Query: 261 REELNVIASLCIENDVLVFSDEVYDKLAFEMDH-ISIASLPGMYERTVTMNSLGKTFSLT 319
+ + + +++++V D Y + F+ + IS S+PG E V +NSL K++SL
Sbjct: 185 EDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLA 244
Query: 320 GWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAI 379
G +IG+ I + + Q S + P+Q AA AALR + E+ + Y ++
Sbjct: 245 GSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDT 304
Query: 380 LVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
LV+G G+ V +G+ FV + P G T ++F L+ VV P F
Sbjct: 305 LVDGFRTFGWNVDKPAGSMFVWAE-IPKGW-TSLSFAYALMDRANVVVTPGHAF 356
|
Length = 399 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 9e-46
Identities = 90/331 (27%), Positives = 171/331 (51%), Gaps = 13/331 (3%)
Query: 110 GAINLGQGFPNFDGPDFVKDAAIQAIRD-GKNQYARGHGVPEFNSAIASRFKKDSGLEVD 168
G I+LGQG ++ P +A + + ++Y G+P AI + ++D+G+E++
Sbjct: 28 GTISLGQGVVSYPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELN 87
Query: 169 PEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD- 227
E+ + VT+G A IL + +PGDE+IL P+Y ++E ++MAG + + P D
Sbjct: 88 NEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILV---PTDD 144
Query: 228 -FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDK 286
+ + E ++ I+ TRAI+ +P+NPTG ++ L + +C E+ + SDE Y+
Sbjct: 145 NYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEY 204
Query: 287 LAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTF 345
++ + H S S+PG T+++ SL K + W+IG+ + P HL +++ +
Sbjct: 205 FTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKIQDTILI 264
Query: 346 ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVF--PSSGTYFVVVD 403
Q+AA AL+ ++Y ++ + + + IL++ L + + P++G ++ +
Sbjct: 265 CPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLK 324
Query: 404 -HTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
+T D + LI+E V IP + F
Sbjct: 325 VNTDL---NDFELVKQLIREYRVAVIPGTTF 352
|
Length = 389 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 2e-45
Identities = 92/353 (26%), Positives = 159/353 (45%), Gaps = 41/353 (11%)
Query: 105 LAIKHGAIN-----LGQGFPNFDGPDFVKDAAIQAIRDGKNQ---YARGHGVPEFNSAIA 156
L ++GA N LG P+ P VK+A + + Y G PE AIA
Sbjct: 26 LKAEYGADNVFDFSLGN--PSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIA 83
Query: 157 SRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGA 216
+ G + + + +T G A+ + ++NPGDEVI+FAP++ Y + G
Sbjct: 84 ESLNRRFGTPLTAD-HIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVDNHGG 142
Query: 217 KIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLC----- 271
K+ + F ++ L++ I+ T+A+++N+P+NPTG +++ E L +A+L
Sbjct: 143 KLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSK 202
Query: 272 -IENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP 330
+ + SDE Y ++ + D + + Y+ ++ + S K+ SL G +IG+ P
Sbjct: 203 EYGRPIYLISDEPYREIVY--DGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNP 260
Query: 331 HLTWGVRQAHSFLTFATST------P--MQWAATAALRAPE--TYYEELKRDYSAKKAIL 380
+ + L FA P MQ L A + Y+ RD +L
Sbjct: 261 EME-DADDLVAALVFANRILGFVNAPALMQRVVAKCLDATVDVSIYKR-NRD------LL 312
Query: 381 VEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
+GL +GF+ G +++ +P E D+AFCE K ++ +P S F
Sbjct: 313 YDGLTELGFECVKPQGAFYLFP-KSPE--EDDVAFCEKAKKH-NLLLVPGSGF 361
|
Length = 394 |
| >gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 4e-44
Identities = 99/354 (27%), Positives = 180/354 (50%), Gaps = 10/354 (2%)
Query: 88 AKRLEKFKTTIFTQMSML---AIKHGA--INLGQGFPNFDGPDFVKDAAIQAIRDGKNQ- 141
A RL+ +F ++ L A + G I+LG G P+ P V +AAI A+ D +N
Sbjct: 9 ADRLQALPPYVFARLDELKARAREQGLDLIDLGMGNPDGAAPQPVIEAAIAALADPQNHG 68
Query: 142 YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFA 201
Y G F AI + + G+E+DP+ E G E + L +NPGD V++ +
Sbjct: 69 YPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPS 128
Query: 202 PFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFT 260
P Y ++ +AGA+I I L+P D+ I + + +++ + + N P NPT
Sbjct: 129 PAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAP 188
Query: 261 REELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLT 319
RE I + + ++++ D Y +LAF+ S+ +PG + V ++L KT+++
Sbjct: 189 REFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMA 248
Query: 320 GWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAI 379
GW++G+ + H+ G+R + L + + +Q AA AL+ P++Y ++++ Y ++
Sbjct: 249 GWRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDF 308
Query: 380 LVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
L++GL +G+ + P+ T ++ V TD A ++++ GVV P + F
Sbjct: 309 LIQGLGELGWNIPPTKATMYLWVPCPVGMGSTDFAL--NVLQKTGVVVTPGNAF 360
|
Length = 394 |
| >gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 2e-42
Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 22/341 (6%)
Query: 112 INLGQG----FPNFDGPDFVKDAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSGLE 166
I L G F N ++A A+R GK N YA G A+A D +
Sbjct: 34 IPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGK 93
Query: 167 VDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP- 225
+ + +V +TSGC++AI I L NPG +++ P + Y+ + +G +++ L P
Sbjct: 94 LTAD-DVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPE 152
Query: 226 PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYD 285
D+ I ++ L+S + T AI++ P NP G +F+R+ L IA + + + + +DE+Y
Sbjct: 153 KDWEIDLDGLESLADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVAEKLGIPIIADEIYG 212
Query: 286 KLAF-EMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGW-AIAPPH--LTWGVRQA-- 339
+ F + I +AS + +++ + K + + GW++GW I PH V Q
Sbjct: 213 HMVFGDAPFIPMASFASIVPV-LSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLK 271
Query: 340 -HSFLTFATSTPMQWAATAAL-RAPETYYEELKRDYSAKKAILV-EGLNAVG--FKVFPS 394
+T +Q A L P+ +++ K A L E L + P
Sbjct: 272 NLLQRILGPATIVQGALPDILENTPQEFFDG-KISVLKSNAELCYEELKDIPGLVCPKPE 330
Query: 395 SGTY-FVVVDHTPFGH-ETDIAFCEYLIKEVGVVAIPTSVF 433
Y V ++ F + D+ FCE L +E V+ +P S F
Sbjct: 331 GAMYLMVKLELELFPEIKDDVDFCEKLAREESVICLPGSAF 371
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403 |
| >gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 4e-41
Identities = 86/323 (26%), Positives = 161/323 (49%), Gaps = 6/323 (1%)
Query: 112 INLGQGFPNFDGPDFVKDAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSGLEVDPE 170
I+LG G P+ P + D + +D + ++Y+ G+P A A+ + + G++++P+
Sbjct: 33 IDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPD 92
Query: 171 KEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFA 229
+V T G E A + PGD ++ P Y + MAG I+ + P +F
Sbjct: 93 TQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEFF 152
Query: 230 IPIEE-LKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLA 288
+E ++ +I K A+++N P NPT + + + + ++D+++ SD Y ++
Sbjct: 153 PALERAVRHSIPKPI-ALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIY 211
Query: 289 FEMDHI-SIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT 347
F+ + S+ +PG + TV S+ KTFS+ GW++G+A+ L + + S+L +
Sbjct: 212 FDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNERLIAALTRVKSYLDYGA 271
Query: 348 STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVD-HTP 406
TP+Q AATAAL P+ E++ Y ++ +LVE G+ + P + + F
Sbjct: 272 FTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRAGWDIPPPAASMFAWAPIPEA 331
Query: 407 FGHETDIAFCEYLIKEVGVVAIP 429
F H + F + L+++ V P
Sbjct: 332 FRHLGSLEFSKLLVEKADVAVAP 354
|
Length = 405 |
| >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 5e-41
Identities = 92/357 (25%), Positives = 164/357 (45%), Gaps = 19/357 (5%)
Query: 84 PQQVAKRLEKFKTTIFTQMSML-------AIKHGAINLGQGFPNFDGPDFVKDAAIQAIR 136
Q ++R + F M++L A H I+L G P+F + + A A+
Sbjct: 2 AQGYSRRSRDIEP--FHVMALLARANELEAAGHDVIHLEIGEPDFTTAEPIVAAGQAALA 59
Query: 137 DGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDE 196
G +Y G+P AIA + + G++VDPE+ + VT G + A+ L++PG
Sbjct: 60 AGHTRYTAARGLPALREAIAGFYAQRYGVDVDPER-ILVTPGGSGALLLASSLLVDPGKH 118
Query: 197 VILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPT 255
+L P Y L + + + + P + + ++ + +T L+ +P NPT
Sbjct: 119 WLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPT 178
Query: 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKT 315
G + +R+EL ++ + DE+Y L + +D AS+ + + +NS K
Sbjct: 179 GTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD---AASVLEVDDDAFVLNSFSKY 235
Query: 316 FSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETY--YEELKRDY 373
F +TGW++GW +APP + + L + STP Q AA A PET E + ++
Sbjct: 236 FGMTGWRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFE-PETLAILEARRAEF 294
Query: 374 SAKKAILVEGLNAVGFKV-FPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429
+ ++ L+ L +GF + G +++ D + FG + AFC + ++ V P
Sbjct: 295 ARRRDFLLPALRELGFGIAVEPQGAFYLYADISAFGGDA-FAFCRHFLETEHVAFTP 350
|
Length = 387 |
| >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 7e-41
Identities = 88/348 (25%), Positives = 162/348 (46%), Gaps = 8/348 (2%)
Query: 89 KRLEKFKTTIFTQMSMLAIKHGA--INLGQGFPNFDGPDFVKDAAIQAI-RDGKNQYARG 145
RL + I ++ M A + G I+ G P+ P + + + R + Y+
Sbjct: 7 DRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGPTPPHIVEKLCEVAQRPDTHGYSTS 66
Query: 146 HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYD 205
G+P AI+ ++ +++DPE E VT G E +A +L ++ GD V++ P Y
Sbjct: 67 RGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYP 126
Query: 206 SYEATLSMAGAKIKCITLRPP-DFAIPIEE-LKSTISKNTRAILMNTPHNPTGKMFTREE 263
+ +AGA+++ + L DF +E ++ + K + +++ P NPT + E
Sbjct: 127 IHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPK-PKMMILGFPSNPTAQCVELEF 185
Query: 264 LNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWK 322
+ +L DVLV D Y + ++ SI +PG + V +L K++++ GW+
Sbjct: 186 FEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWR 245
Query: 323 IGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVE 382
IG+ + P L + + S+ + T TP+Q AA AAL + ++ Y ++ +LV+
Sbjct: 246 IGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVK 305
Query: 383 GLNAVGFKVFPSSGTYFVVVD-HTPFGHETDIAFCEYLIKEVGVVAIP 429
GL+ G+ V + +V P+ + F + L+ E V P
Sbjct: 306 GLHEAGWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSP 353
|
Length = 395 |
| >gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 7e-40
Identities = 88/373 (23%), Positives = 173/373 (46%), Gaps = 32/373 (8%)
Query: 73 QSDTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGA--INLGQGFPNFDGPDFVKDA 130
S+ ++ L Q A + K + G INLGQG P+ P+ + +A
Sbjct: 5 PSELLK--QLPKQFFASLVAKVNK---------KVAEGHDVINLGQGNPDQPTPEHIVEA 53
Query: 131 AIQAIRDGKN-QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189
+A + N +Y+ G P A A +K++ G+ +DPE EV + G +
Sbjct: 54 LQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQC 113
Query: 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-----PDFAIPIEELKSTISKNTR 244
L+NPGD +++ P Y Y + +++A A+ + + L PD+ ++ +++ +
Sbjct: 114 LMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDY----TKIPEEVAEKAK 169
Query: 245 AILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH-ISIASLPGMY 303
+ +N P+NPTG + T+ + ++++ V D Y + F+ +S PG
Sbjct: 170 LMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAK 229
Query: 304 ERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVR--QAHSFLT-FATSTPMQWAATAALR 360
+ + + +L KTF++ GW++ +A+ + + Q H F++ F +Q AA AL
Sbjct: 230 DVGIELYTLSKTFNMAGWRVAFAVGNESVIEAINLLQDHLFVSLFGA---IQDAAIEALL 286
Query: 361 APETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLI 420
+ ++ EL Y +++ + +G++V G++F + P G+ T F + L+
Sbjct: 287 SDQSCVAELVARYESRRNAFISACREIGWEVDAPKGSFFAWMP-VPKGY-TSEQFADLLL 344
Query: 421 KEVGVVAIPTSVF 433
++ V P + F
Sbjct: 345 EKAHVAVAPGNGF 357
|
Length = 389 |
| >gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 2e-38
Identities = 94/326 (28%), Positives = 159/326 (48%), Gaps = 14/326 (4%)
Query: 112 INLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEK 171
I++G G P+F P+ V +AA +A+R G QY G+ AIA+ + + GL+V PE+
Sbjct: 33 IHMGIGEPDFTAPEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPER 92
Query: 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD-FAI 230
+ VT+G + A+ L L+ GDEV++ P Y ++ A + + P + F +
Sbjct: 93 -IVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQL 151
Query: 231 PIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE 290
++++ + TR +L+ +P NPTG +EL I DE+Y L+++
Sbjct: 152 TAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYD 211
Query: 291 MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTP 350
+S SL + +T+NS K F++TGW++GW + P L + L S
Sbjct: 212 AAPVSALSLG---DDVITINSFSKYFNMTGWRLGWLVVPEALVGTFEKLAQNLFICASAL 268
Query: 351 MQWAATAALRAPETY--YEELKRDYSAKKAILVEGLNAVGFKVFP--SSGTYFVVVDHTP 406
Q AA A P+T YE + ++ ++ +V L ++GFKV P G ++V D
Sbjct: 269 AQHAALACF-EPDTLAIYERRRAEFKRRRDFIVPALESLGFKV-PVMPDGAFYVYADCRG 326
Query: 407 FGH---ETDIAFCEYLIKEVGVVAIP 429
H A + ++ + GVV +P
Sbjct: 327 VAHPAAGDSAALTQAMLHDAGVVLVP 352
|
Length = 388 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 6e-37
Identities = 84/308 (27%), Positives = 135/308 (43%), Gaps = 32/308 (10%)
Query: 124 PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183
P V +A A+ N+Y E +A+A + V + V V +G E I
Sbjct: 37 PPKVIEAIRAALDKL-NRYPDPDY-RELRAALAEYYG------VVDPENVLVGNGSDELI 88
Query: 184 AATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNT 243
+ + PGD V++ P + YE +AGA++ + L+ +F + ++ + + I T
Sbjct: 89 ELLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLK--EFRLDLDAILAAIRDKT 146
Query: 244 RAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303
+ + + P+NPTG + REEL + LV DE Y ++ +SL +
Sbjct: 147 KLVFLCNPNNPTGTLLPREELRALLEAL-PEGGLVVIDEAY------IEFSPESSLELLK 199
Query: 304 ER--TVTMNSLGKTFSLTGWKIGWAIAPPHL--TWGVRQAHSFLTFATSTPMQWAATAAL 359
+ + + K F L G ++G+AIA P L + F S+P AA AAL
Sbjct: 200 YPPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRPP----FNVSSPALAAAIAAL 255
Query: 360 RAPETYYEELKRDYSAKKAILVEGLNAVG-FKVFPSSGTYFVVVDHTPFGHETDIAFCEY 418
R + Y EE ++ L L A+G F VFPS FV+V A E
Sbjct: 256 RDAD-YLEESVERIREERERLYAALKALGLFGVFPSQAN-FVLVRV---PDAEAAALAEA 310
Query: 419 LIKEVGVV 426
L+K+ G++
Sbjct: 311 LLKK-GIL 317
|
Length = 356 |
| >gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 2e-35
Identities = 89/332 (26%), Positives = 150/332 (45%), Gaps = 19/332 (5%)
Query: 112 INLGQGFPNFDGPDFVKDAAIQAIRDGKNQ-YARGHGVPEFNSAIASRFKKDSGLEVDPE 170
I+L Q P + P + A +A D Y G+PE A A+ + + G + PE
Sbjct: 32 IDLSQAVPGYPPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPE 91
Query: 171 KEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP---PD 227
+V +TSGC +A A ++ L GDEVIL P+Y +++ L M G I+ + L P
Sbjct: 92 -QVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDMLG--IRPVYLPCDEGPG 148
Query: 228 FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYD-- 285
++ I+ TRAI + TP+NPTG ++ E L+ + L + + + DE Y
Sbjct: 149 LLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDF 208
Query: 286 KLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL-T 344
H + + P + V + S K+++LTG ++G +A P + + F+ T
Sbjct: 209 DSGGGAPH-DLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPAR---IAEIEKFMDT 264
Query: 345 FATSTPM--QWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVV 401
A P Q A L + + + + ++ + G+++ +SG YF
Sbjct: 265 VAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARLPGWELL-ASGAYFAY 323
Query: 402 VDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
V H PF L KE G++ +P ++F
Sbjct: 324 VRH-PFPDRPSREVARRLAKEAGILCLPGTMF 354
|
Length = 386 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 3e-35
Identities = 94/312 (30%), Positives = 142/312 (45%), Gaps = 21/312 (6%)
Query: 128 KDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187
+A Q + K Y G PEF A+AS ++ V PE + T+G T A +
Sbjct: 44 PEAFYQELGQKKLTYGWIEGSPEFKEAVASLYQN-----VKPE-NILQTNGATGANFLVL 97
Query: 188 LGLINPGDEVILFAPFYDS-YEATLSMAGAKIKCITLRPPDFAIP-IEELKSTISKNTRA 245
L+ PGD VI P Y Y+ S+ GA++ L+ + +P ++EL+ + NT+
Sbjct: 98 YALVEPGDHVISVYPTYQQLYDIPESL-GAEVDYWQLKEENGWLPDLDELRRLVRPNTKL 156
Query: 246 ILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYER 305
I +N +NPTG + R L I + D V SDEVY L + SIA L YE+
Sbjct: 157 ICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADL---YEK 213
Query: 306 TVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETY 365
++ NS+ KT+SL G ++GW A + +R+ + A+ AL +
Sbjct: 214 GISTNSMSKTYSLPGIRVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAI 273
Query: 366 YEELKRDYSAKKAIL---VEGLNAVGFKVFPSSG-TYFVVVDHTPFGHETDIAFCEYLIK 421
E ++ AIL V V + V P + T FV +D FC L+K
Sbjct: 274 LERNRKIVRTNLAILDEWVAKEPRVSY-VKPKAVSTSFVKLD-VD---MPSEDFCLKLLK 328
Query: 422 EVGVVAIPTSVF 433
E GV+ +P + F
Sbjct: 329 ETGVLLVPGNRF 340
|
Length = 373 |
| >gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 5e-35
Identities = 86/320 (26%), Positives = 153/320 (47%), Gaps = 10/320 (3%)
Query: 113 NLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKE 172
+ G G P P F++ A I A+ + +QY G AI+ F++ G+++DP+ +
Sbjct: 4 DFGTGDPKEPTPPFIRKALIDAVPE-VSQYPSALGTKALREAISGWFERRFGVKLDPDAQ 62
Query: 173 VTVTSGCTEAIAATILGLINPGDE---VILFAPFYDSYEATLSMAGAKIKCITLRPPD-F 228
V ++G EAI L I+P ++ VI P Y YE AG + + L+ D F
Sbjct: 63 VLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGF 122
Query: 229 AIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLA 288
+ +E+++ +I + T+ + +N PHNPTG R L ++C E+ +++ SDE Y ++
Sbjct: 123 LLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIY 182
Query: 289 FEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348
F S L E + +SL K +TG++ G+ L +R+ + A+
Sbjct: 183 FGEPPHSA--LEVGIENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFGVASP 240
Query: 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFG 408
+Q AA AA + + + E ++ + K+ + +E N VG + T+++ V P G
Sbjct: 241 DFVQAAAKAAW-SDDNHVLERRKIFKRKRDLFIEFFNKVGLEYLYPDATFYLWV-KVPSG 298
Query: 409 HETDIAFCEYLIKEVGVVAI 428
+ L++ VVA
Sbjct: 299 I-DAKDYALRLLENGIVVAP 317
|
The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350 |
| >gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 3e-34
Identities = 92/357 (25%), Positives = 166/357 (46%), Gaps = 9/357 (2%)
Query: 86 QVAKRLEKFKTTIFTQMSM---LAIKHG--AINLGQGFPNFDGPDFVKDAAIQAIRDGKN 140
Q A+RL+ ++ +F M A G I+L G + P +A Q++ D
Sbjct: 2 QFAQRLQPLQSNVFADMDRAKAQARAAGKELIDLSLGSSDLPAPAHALEAIAQSLHDPST 61
Query: 141 Q-YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVIL 199
Y HG +F A A +++ GL VDPE EV G E A L ++NPGD +L
Sbjct: 62 HGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALL 121
Query: 200 FAPFYDSYEATLSMAGAKIKCITLRPPDFAIPI-EELKSTISKNTRAILMNTPHNPTGKM 258
P Y S+ + +AG +I + LR + +P+ ++ + + R ++++ PHNPT +
Sbjct: 122 LDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAI 181
Query: 259 FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMN--SLGKTF 316
+ C ++D+++ D Y L F+ + + L E++V++ +L K++
Sbjct: 182 APLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSY 241
Query: 317 SLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAK 376
++ G++IG+AI L +RQ + + F + A AAL P+ ++ + + +
Sbjct: 242 NMGGFRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQR 301
Query: 377 KAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
+ + L+ +G+ V T +V + FC L+ + GV A P S F
Sbjct: 302 RDAFINALHQIGWPVPLPEATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGF 358
|
Length = 388 |
| >gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 4e-34
Identities = 91/314 (28%), Positives = 149/314 (47%), Gaps = 14/314 (4%)
Query: 121 FDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180
F P V +A Q + Y +A+ + + G ++DPE + G
Sbjct: 37 FATPPAVLEALKQRLEHPVFGYT--LPPDSLYAAVINWLAQRHGWQIDPE-WIVFLPGVV 93
Query: 181 EAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLR--PPDFAIPIEELKST 238
++ A + L PG+ VI+ P Y + + + G ++ L+ P + +E+L+
Sbjct: 94 PSLFAAVRALTAPGEGVIVQTPVYPPFLSAVKSNGRELVLNPLKLDPGRYRFDLEDLEDA 153
Query: 239 ISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAF-EMDHISIA 297
I++ R +L+ +PHNP G+++TREEL +A LC+ ++V+V SDE++ L + HI +A
Sbjct: 154 ITEKARLLLLCSPHNPVGRVWTREELTRLAELCLRHNVVVVSDEIHADLVYPPNKHIPLA 213
Query: 298 SL-PGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAA 355
SL P + ERTVT+ S GKTF++ G I +AI P P L ++A + + A
Sbjct: 214 SLSPEIAERTVTLLSPGKTFNIAGLNISFAIIPNPELRRAFQEAAQRVHIQHGNLFGYVA 273
Query: 356 T-AALRAPETYYEELKRDYSAKKAILVEGLNAV---GFKVFPSSGTYFVVVDHTPFGHET 411
AA R E + + L Y LVE A +V P TY +D G
Sbjct: 274 FEAAYREGEPWLDAL-LAYLRGNRDLVEEFIAKRLPQIRVRPPEATYLAWLDCRALGL-D 331
Query: 412 DIAFCEYLIKEVGV 425
D + I++ G+
Sbjct: 332 DADLRAFFIEQAGL 345
|
Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384 |
| >gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 6e-34
Identities = 94/337 (27%), Positives = 159/337 (47%), Gaps = 32/337 (9%)
Query: 112 INLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLE-VDPE 170
I++G G P+ + V + + + +N+ +G+ EF A A +K G++ +DP
Sbjct: 47 IDMGVGEPDEMADESVVEVLCEEAKKPENRGYADNGIQEFKEAAARYMEKVFGVKDIDPV 106
Query: 171 KEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP----- 225
EV + G A+A INPGD ++ P Y G ++ + L
Sbjct: 107 TEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFL 166
Query: 226 PDF-AIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVY 284
PD +IP + I + + + +N P+NPTG + T+E + EN+++V D Y
Sbjct: 167 PDLDSIPKD-----IKEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAY 221
Query: 285 DKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT 344
L F+ +S S+PG E V ++SL K +++TGW++ + + + V+ +F T
Sbjct: 222 AALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNELI---VK---AFAT 275
Query: 345 FATST------PMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTY 398
+ +Q A AL PE E+++ YS + LV+ LN VGFK GT+
Sbjct: 276 VKDNNDSGQFIAIQKAGIYALDHPEI-TEKIREKYSRRLDKLVKILNEVGFKAEMPGGTF 334
Query: 399 FVVVDHTPFGHETDIAF------CEYLIKEVGVVAIP 429
++ V P G ++ I F +YLIKE + +P
Sbjct: 335 YLYVK-APKGTKSGIKFENAEEFSQYLIKEKLISTVP 370
|
Length = 410 |
| >gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-31
Identities = 96/341 (28%), Positives = 150/341 (43%), Gaps = 24/341 (7%)
Query: 112 INLGQGFPNFDGPDFVKDAAIQAIRD----GK-NQYARGHGVPEFNSAIASRFKK-DSGL 165
I L G P G +QA++D GK N YA G AIAS + D +
Sbjct: 34 IKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDGPI 93
Query: 166 EVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP 225
E D +V + SGC+ AI I L N G +++ P + Y G ++K L P
Sbjct: 94 EAD---DVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYRTLAESMGIEVKLYNLLP 150
Query: 226 -PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVY 284
+ I +++L+S I + T A+++N P NP G +F+R+ L I ++ + + +DE+Y
Sbjct: 151 DKSWEIDLKQLESLIDEKTAALVVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIY 210
Query: 285 DKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH--LTWGVR---Q 338
+ F +ASL ++ L K + + GW++GW I + +R
Sbjct: 211 GDMVFSGATFEPVASLSSNVPI-LSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLV 269
Query: 339 AHSFLTFATSTPMQWAATAAL-RAPETYYEELKRDYSAKKAILVEGLNA--VGFK-VFPS 394
S T +Q A + L R P+ Y++ A+L G A G + V PS
Sbjct: 270 KLSQRILGPCTIVQGALPSILLRTPQEYFDGT-LSVLESNAMLCYGALAAVPGLQPVMPS 328
Query: 395 SGTY-FVVVDHTPFGH-ETDIAFCEYLIKEVGVVAIPTSVF 433
Y V ++ F + D+ F E LI E V +P S F
Sbjct: 329 GAMYMMVGIEMEHFPEFKNDVEFTERLIAEQSVFCLPGSCF 369
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401 |
| >gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-29
Identities = 89/303 (29%), Positives = 129/303 (42%), Gaps = 35/303 (11%)
Query: 130 AAIQAIR---DGKNQY--ARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184
A++AI ++Y PE A++ V E + G E I
Sbjct: 51 KAVEAIEKELSKIHRYPEPD---APELREALSKY------TGVPVENIIVGGDGMDEVID 101
Query: 185 ATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTR 244
+ I+PGDEVI+ P + YE + GAK R DF++ ++ + + I++ T+
Sbjct: 102 TLMRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAK-REEDFSLDVDSVLNAITEKTK 160
Query: 245 AILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYE 304
I + TP+NPTG + E++ I D LVF DE Y E L Y+
Sbjct: 161 VIFLCTPNNPTGNLIPEEDIRKILE---STDALVFVDEAY----VEFAEYDYTPLALEYD 213
Query: 305 RTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT-FATSTPMQWAATAALRAPE 363
+ + K F L G +IG+ P W + T F+ + Q AA AAL E
Sbjct: 214 NLIIGRTFSKVFGLAGLRIGYGFVPE---WLIDYYMRAKTPFSLTRLSQAAAIAALSDKE 270
Query: 364 TYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEV 423
Y E+ + L L FKV+P S FV+VD TP T FCE L+K
Sbjct: 271 -YIEKSIEHGIKSREYLYNELP---FKVYP-SEANFVLVDVTPM---TAKEFCEELLKR- 321
Query: 424 GVV 426
GV+
Sbjct: 322 GVI 324
|
Length = 361 |
| >gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Score = 117 bits (297), Expect = 2e-29
Identities = 73/262 (27%), Positives = 134/262 (51%), Gaps = 42/262 (16%)
Query: 121 FDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180
F+ PD + I+ + + Y+ G+ AI +++ +VD + ++ + +G +
Sbjct: 48 FEAPDEILRDVIRNLPTAQG-YSDSKGLFSARKAIMQYYQQKGIPDVDVD-DIYIGNGVS 105
Query: 181 EAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP------------PDF 228
E I + L+N GDEV++ AP Y + A +S++G K P PD
Sbjct: 106 ELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSGGK-------PVHYLCDEEAGWFPD- 157
Query: 229 AIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLA 288
+++++S I+ T+AI++ P+NPTG ++++E L I + ++++++F+DE+YDK+
Sbjct: 158 ---LDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKIL 214
Query: 289 FE-MDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSF---L 343
++ HISIASL P + VT N L K + + G+++GW + L+ + A + L
Sbjct: 215 YDGAVHISIASLAPDLL--CVTFNGLSKAYRVAGFRVGWMV----LSGPKKHAKGYIEGL 268
Query: 344 TFATST------PMQWAATAAL 359
S P Q A AL
Sbjct: 269 DMLASMRLCANVPAQHAIQTAL 290
|
Length = 404 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 3e-29
Identities = 75/304 (24%), Positives = 126/304 (41%), Gaps = 22/304 (7%)
Query: 135 IRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPG 194
RDG + G +AIA R++ D V T G +EAI + L+ PG
Sbjct: 45 FRDGPSL-----GGEGLRAAIADRWRGG-----DAHV-VMTTHGSSEAIYLVLTALLRPG 93
Query: 195 DEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHN 253
DEV++ P Y S G +++ L F ++ L++ ++ TRA+++N PHN
Sbjct: 94 DEVVVVDPAYHSLSHLAVATGCEVRPWPLLAVRGFRPDLDALRALLTPRTRAVVVNFPHN 153
Query: 254 PTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLG 313
PTG T EL+ + + ++ D + L D + +Y+R ++ +L
Sbjct: 154 PTGASVTPRELDELLERAARSGAVLLWDNAFADLVH--DAPPLPDPSALYDRVISFGTLS 211
Query: 314 KTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDY 373
K F L G ++GW + P L + + + T + S ++ A A+ + +
Sbjct: 212 KAFGLPGLRVGWCVGPADLLAELVRLRDYTTLSLSPLVELLAEVAVEHADALIGPRLAEA 271
Query: 374 SAKKAILVEGLNAVGFKV---FPSSG-TYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429
A + L++ A V P G F GH C L+ GV+ +P
Sbjct: 272 RANRRRLLDWAAAHPDVVRCTPPEGGVAAFPRF----PGHADVTDLCRRLLARHGVLLVP 327
Query: 430 TSVF 433
S F
Sbjct: 328 GSCF 331
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 3e-29
Identities = 76/285 (26%), Positives = 135/285 (47%), Gaps = 21/285 (7%)
Query: 121 FDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180
F P K+A ++A D ++Y E A+A + VDPE ++ + +G
Sbjct: 31 FGPPPKAKEA-LRAEADKLHRYPDPDP-AELKQALADYYG------VDPE-QILLGNGSD 81
Query: 181 EAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS 240
E I I + PGD V++ P Y YE + + GA++ + L D + +E++ I
Sbjct: 82 EIIELLIRAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLD-EDGQLDLEDILVAID 140
Query: 241 KNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLP 300
+ + + +P+NPTG + +R ++ + D LV DE Y + + E + + +
Sbjct: 141 DKPKLVFLCSPNNPTGNLLSRSDIEAVLER-TPEDALVVVDEAYGEFSGEPSTLPLLA-- 197
Query: 301 GMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT-FATSTPMQWAATAAL 359
Y + + +L K F L G +IG+AIA + + + F S Q AA AAL
Sbjct: 198 -EYPNLIVLRTLSKAFGLAGLRIGYAIANAEI---IDALNKVRAPFNLSRLAQAAAIAAL 253
Query: 360 RAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVD 403
R + + E+ + +A++ L +GL + G +V+PS FV++
Sbjct: 254 RDDD-FIEKTVEEINAERERLYDGLKKLPGLEVYPSDAN-FVLIR 296
|
Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346 |
| >gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 3e-28
Identities = 94/331 (28%), Positives = 135/331 (40%), Gaps = 34/331 (10%)
Query: 125 DFVKDAAIQAIRDGKNQYARGHGV-------PEFNSAIASRFKKDSGLEVDPEKEVTVTS 177
DF I + + HGV E +AIA FK+ E+ PE +
Sbjct: 36 DF---PTPPEIIEALRERVD-HGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEW-IVFVP 90
Query: 178 GCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD--FAIPIEEL 235
G I+ I L PGD V++ P Y + + + G K+ L D + I + L
Sbjct: 91 GVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDAL 150
Query: 236 KSTISKNTRA--ILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD- 292
+ IL N PHNPTG+++T+EEL IA LC+ + V V SDE++ L
Sbjct: 151 EKAFVDERVKLFILCN-PHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHK 209
Query: 293 HISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLT---WGVRQA---HSFLT 344
HI ASL + ++T+ S KTF+L G K + I L + H
Sbjct: 210 HIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSA 269
Query: 345 FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA--VGFKVFPSSGTYFVVV 402
+ A AA E + +EL + + + LN G KV GTY +
Sbjct: 270 LG----II-ATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTYLAWL 324
Query: 403 DHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
D G D E+L++E V P S F
Sbjct: 325 DCRELG-LDDSELAEFLLEEAKVALSPGSTF 354
|
Length = 388 |
| >gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 8e-28
Identities = 85/322 (26%), Positives = 143/322 (44%), Gaps = 26/322 (8%)
Query: 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSGLEVD 168
I +GQ + + V++A I+ I +G+ +Y G PE I KD GL
Sbjct: 29 EMIWMGQNTNHLGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELIL----KDLGL--- 81
Query: 169 PEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-- 226
+ E +T+G TE++ + ++PGD + P Y + S GA++ + +
Sbjct: 82 DDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEEC 141
Query: 227 DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDK 286
++ + E +K + +NTR I + P NP G +T EE+ A + +ND + D Y
Sbjct: 142 NYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRD 201
Query: 287 LAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA 346
A E ++ P E TVT S K F + G +IG +A P L V+
Sbjct: 202 FARE-HTLAAEYAP---EHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKSI-VINDLG 256
Query: 347 TSTPMQWAATAALRAPETYYEELKRDYSAKKAIL---VEGLNAVGFKVFPSSGTYFVVVD 403
T+ Q AA A L+ + + + ++R + ++ V+ + V V+PS G +V+D
Sbjct: 257 TNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGN-MMVID 315
Query: 404 HTPFGHETDI---AFCEYLIKE 422
E I EYL++
Sbjct: 316 I----SEAGIDPEDLVEYLLER 333
|
Length = 380 |
| >gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 86/354 (24%), Positives = 158/354 (44%), Gaps = 13/354 (3%)
Query: 89 KRLEKFKTTIFTQMSMLAIKHGA--INLGQGFPNFDGPDFVKDAAIQAIRDGKNQ-YARG 145
KRL K+ ++ M A + G I+ G P+ P + D ++ + K Y+
Sbjct: 11 KRLPKYVFAEVNELKMAARRAGEDIIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSVS 70
Query: 146 HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYD 205
G+ + AI + +K+ +++DPE EV T G E + + NPGD I+ P Y
Sbjct: 71 KGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYP 130
Query: 206 SYEATLSMAGAKIKCITLR-PPDFAIPIEELKSTISKNTRA-------ILMNTPHNPTGK 257
+ +AG + + L DF + ++ + K R +++N PHNPT
Sbjct: 131 IHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTA 190
Query: 258 MFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTF 316
+ + +L + + SD Y + F+ SI + G + V +L K++
Sbjct: 191 TVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSY 250
Query: 317 SLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAK 376
++ GW++G+ + L +++ S+L + TP+Q AAT AL ++ EE++ Y +
Sbjct: 251 NMAGWRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDGDQSCVEEIRETYRKR 310
Query: 377 KAILVEGLNAVGFKVFPSSGTYFVVVD-HTPFGHETDIAFCEYLIKEVGVVAIP 429
+ +L+E G+++ + FV P H + F + L+ E V P
Sbjct: 311 RDVLIESFANAGWELQKPRASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSP 364
|
Length = 403 |
| >gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 80/299 (26%), Positives = 125/299 (41%), Gaps = 24/299 (8%)
Query: 106 AIKH--GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDS 163
A H G ++L G P P ++ A A Y + G PE AI ++
Sbjct: 16 AASHPDGIVDLSVGTPVDPVPPLIRAALAAAA--DAPGYPQTWGTPELREAIVDWLERRR 73
Query: 164 GLEVDPEKEVTVTSGCTEAIA--ATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCI 221
G+ V G E +A T+LGL PGD V++ Y +YE +AGA
Sbjct: 74 GVPGLDPTAVLPVIGTKELVAWLPTLLGL-GPGDTVVIPELAYPTYEVGALLAGATP--- 129
Query: 222 TLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSD 281
+ ++ I +N+P NPTG++ + +EL I + E +V SD
Sbjct: 130 --------VAADDPTELDPVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASD 181
Query: 282 EVYDKLAFEMDHISIASLP----GMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVR 337
E Y +L +E +SI P G + + ++SL K +L G++ G+ P L +
Sbjct: 182 ECYLELGWEGRPVSILD-PRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELL 240
Query: 338 QAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSG 396
P+Q A AAL + + E K Y+A++A L L GF++ S
Sbjct: 241 TVRKHAGLMVPAPVQAAMVAAL-GDDGHVAEQKARYAARRAQLKPALEKAGFRIDHSEA 298
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357 |
| >gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 9e-26
Identities = 83/347 (23%), Positives = 148/347 (42%), Gaps = 25/347 (7%)
Query: 110 GAINLGQGFPNFDG----PDFVKDAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSG 164
I L G P DG P A ++A+ + N Y G PE A+A+ ++
Sbjct: 34 SIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFV 93
Query: 165 LEVDPEKE-----VTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIK 219
+ + V + SG + AI + L + GD +++ AP + YE G +++
Sbjct: 94 HKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMR 153
Query: 220 CITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLV 278
RP D+ ++E++ + T+A++M P NP G F+R+ + I LC E + +
Sbjct: 154 FYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPL 213
Query: 279 FSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI-APPH----- 331
SDE+Y + F S+A R + + K + GW++GW + PH
Sbjct: 214 ISDEIYAGMVFNGATFTSVADFDTTVPRVI-LGGTAKNLVVPGWRLGWLLLVDPHGNGGD 272
Query: 332 LTWGVRQAHSFLTFATSTPMQWA-ATAALRAPETYYEELKRDYSAKKAILVEGL-NAVGF 389
G+++ L + +Q A A L P+ + E++ +L + +G
Sbjct: 273 FLDGMKRL-GMLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGL 331
Query: 390 KVFPSSGTYF--VVVDHTPFGH-ETDIAFCEYLIKEVGVVAIPTSVF 433
G+ F +D F ++D+ F E L++E V +P +F
Sbjct: 332 SPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIF 378
|
Length = 412 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-25
Identities = 81/343 (23%), Positives = 144/343 (41%), Gaps = 30/343 (8%)
Query: 110 GAINLGQGFPNFDGPDF--VKDAAIQAIRDGKN----QYARGHGVPEFNSAIASRFKKDS 163
I+ G P+ ++ A + +R+ QY G+PE AIA+
Sbjct: 90 SVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARR 149
Query: 164 GLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITL 223
G+ +PE ++ +TSG +A+ + L++PGD V++ P Y L GA++ I +
Sbjct: 150 GISCEPE-QIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARV--IPV 206
Query: 224 RPPDFAIPIEELKSTISKNTRAILMNTP--HNPTGKMFTREELNVIASLCIENDVLVFSD 281
+ I E L+ +++ + TP NPTG + E + +L + DVL+ D
Sbjct: 207 PVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIED 266
Query: 282 EVYDKLAFEMDHISIASLPGMY--ERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA 339
+ Y D L + R + + S KT + G ++G+ +APP L + +
Sbjct: 267 DYYG--ELRYDGPPPPPLKALDAPGRVIYLGSFSKTLA-PGLRLGYVVAPPELIEKLLRL 323
Query: 340 HSFLTFATSTPMQWAATAALRAPETYYEE----LKRDYSAKKAILVEGLNAVGFKVF--- 392
S+ Q A A L + +Y+ L+R+Y+ ++ L+E L ++
Sbjct: 324 KQAADLGPSSLSQAALAAFLLSG--HYDRHLRRLRREYARRRDALLEALAEYLPELATWT 381
Query: 393 -PSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
P G F+ ++ P G + E GVV P +
Sbjct: 382 RPEGG-LFLWLE-LPEGIDARELL--AAALEKGVVVTPLGSAF 420
|
Length = 459 |
| >gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 9e-25
Identities = 95/340 (27%), Positives = 158/340 (46%), Gaps = 20/340 (5%)
Query: 112 INLGQG----FPNFDGPDFVKDAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSGLE 166
+ LG G FP F +DA A+R GK N Y+ G+ AIA +D E
Sbjct: 55 LPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYE 114
Query: 167 VDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP 226
+ + ++ +T+GC +AI + L PG ++L P Y YEA +G +++ L P
Sbjct: 115 LSTD-DIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPE 173
Query: 227 -DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYD 285
+ + +E +++ +NT A+++ P+NP G +++ E L IA + +LV +DEVYD
Sbjct: 174 RGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYD 233
Query: 286 KLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGW-AIAPPH----LTWGVRQAH 340
L F + G +T+ S+ K + + GW++GW A P+ T V
Sbjct: 234 HLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIR 293
Query: 341 SFLTFAT--STPMQWAATAAL-RAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSS-- 395
++L +T +T +Q A + E ++ + I E + + P
Sbjct: 294 NYLNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPE 353
Query: 396 GTYFVVV--DHTPF-GHETDIAFCEYLIKEVGVVAIPTSV 432
G+ FV+V D + G + D+ FC L KE VV +P S
Sbjct: 354 GSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSA 393
|
Length = 430 |
| >gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 6e-24
Identities = 70/235 (29%), Positives = 123/235 (52%), Gaps = 38/235 (16%)
Query: 112 INLGQGFP-NFDGPD-FVKDAAIQ--------------AIRDGKNQYARGHGVPEFNSAI 155
+N+G P F PD V D A Q + R QYA+ G+P
Sbjct: 151 LNIGNPAPFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLP------ 204
Query: 156 ASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAG 215
++VD ++ +G +E I ++ L++ GDEV++ +P Y + A +++AG
Sbjct: 205 --------NVDVD---DIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAG 253
Query: 216 AK-IKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIEN 274
+ ++ I++++S I+ T+AI++ P+NPTG ++ RE L I + E+
Sbjct: 254 GTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREH 313
Query: 275 DVLVFSDEVYDKLAFE-MDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAI 327
+++FSDE+YD+L + ++H SIASL P ++ VT + L K+ + G++IGW I
Sbjct: 314 QLIIFSDEIYDRLVMDGLEHTSIASLAPDLF--CVTFSGLSKSHMIAGYRIGWMI 366
|
Length = 517 |
| >gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 92/338 (27%), Positives = 143/338 (42%), Gaps = 33/338 (9%)
Query: 111 AINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIAS----RFKKDSGLE 166
I L G P P FV +A + + G + Y G+PE AIA RF +G
Sbjct: 30 PIALSIGEPKHPTPAFVLEALRENL-HGLSTYPTTKGLPELRQAIARWLERRFDLPTG-- 86
Query: 167 VDPEKEVTVTSGCTEAIAATILGLINPGDE--VILFAPFYDSYEATLSMAGAKIKCITLR 224
VDPE+ V +G EA+ A +INPG V++ PFY YE +AGA+ +
Sbjct: 87 VDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCT 146
Query: 225 P-----PDF-AIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLV 278
PDF A+P ++ + + + + +P NPTG + + + L + L + ++
Sbjct: 147 AENGFLPDFDAVP-----ESVWRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFII 201
Query: 279 FSDEVYDKLAFEMDHISIASLP-------GMYERTVTMNSLGKTFSLTGWKIGWAIAPPH 331
SDE Y +L F+ + L + R + +SL K +L G + G+
Sbjct: 202 ASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAE 261
Query: 332 LTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKV 391
+ + ++ A P Q A+ AA E + E + Y K A ++E L V
Sbjct: 262 ILKAFLRYRTYHGCAMPIPTQLASIAAW-NDEQHVRENRALYREKFAAVLEILGQVLDLE 320
Query: 392 FPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429
P +G Y P D AF L +E V +P
Sbjct: 321 LPDAGFYLWP--KVPG---DDEAFARALYEEENVTVLP 353
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393 |
| >gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 1e-22
Identities = 80/294 (27%), Positives = 129/294 (43%), Gaps = 34/294 (11%)
Query: 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQ--YARGHGVPEFNSAIASRFKKDSGLEV 167
G ++L G P D V +A+ + Y G PE AI + G+
Sbjct: 28 GIVDLSVGTP----VDPVPPVIQEALAAAADAPGYPTTAGTPELREAIVGWLARRRGVTG 83
Query: 168 DPEKEVTVTSGCTEAIA--ATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP 225
V G E +A T+LGL PGD V++ Y +YE +AGA + +R
Sbjct: 84 LDPAAVLPVIGSKELVAWLPTLLGL-GPGDVVVIPELAYPTYEVGARLAGATV----VRA 138
Query: 226 PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYD 285
EL I +N+P NPTG++ + L + + E +V SDE Y
Sbjct: 139 DSLT----ELGPQ---RPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYL 191
Query: 286 KLAFEMDHISIASLP----GMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT---WGVRQ 338
+L ++ + +SI P G + + ++SL K +L G++ G+ P L VR+
Sbjct: 192 ELGWDAEPVSILD-PRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAELLEVRK 250
Query: 339 AHSFLTFATSTPMQWAATAALRAPETYYEELKRD-YSAKKAILVEGLNAVGFKV 391
H+ + P+Q A AAL + + +R+ Y+ ++A+L L A GF+V
Sbjct: 251 -HAGMM--VPAPVQAAMVAALG--DDAHVREQRERYARRRAVLRPALEAAGFRV 299
|
Length = 364 |
| >gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 2e-22
Identities = 59/259 (22%), Positives = 104/259 (40%), Gaps = 30/259 (11%)
Query: 149 PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYE 208
E +A A+ + + V +G EAI L + V++ AP Y Y
Sbjct: 50 DELRAAAAAYYG------LPAA-SVLPVNGAQEAIYL--LPRLLAPGRVLVLAPTYSEYA 100
Query: 209 ATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268
AG ++ + ++ L + + + ++ N P+NPTG++ E L +A
Sbjct: 101 RAWRAAGHEVVELP--------DLDRLPAALEEADLLVVCN-PNNPTGRLIPPETLLALA 151
Query: 269 SLCIENDVLVFSDEVYDKLAFE--MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWA 326
+ + DE AF S+A + V + SL K F L G ++G+
Sbjct: 152 ARLRARGGWLVVDE-----AFIDFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFV 206
Query: 327 IAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA 386
+A P L +R+A + + P A AAL A + + +A++A L L
Sbjct: 207 VAHPALIARLREA--LGPWTVNGPALAAGRAAL-ADTAWQAATRARLAAERARLAALLAR 263
Query: 387 VGF-KVFPSSGTYFVVVDH 404
+G +V + F++V
Sbjct: 264 LGGLRVVGGT-ALFLLVRT 281
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330 |
| >gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 2e-22
Identities = 87/338 (25%), Positives = 145/338 (42%), Gaps = 20/338 (5%)
Query: 111 AINLGQGFPN----FDGPDFVKDAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSGL 165
AI+ G G P+ F + +DA ++A+R K N YA G+ AIA D
Sbjct: 34 AISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPY 93
Query: 166 EVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP 225
++ P+ +V +T GC A I L P ++L P + E +I+ L P
Sbjct: 94 QLSPD-DVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLP 152
Query: 226 PD-FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVY 284
+ + ++ +++ +NT A+++ P NP G +++ E LN IA + +LV +DEVY
Sbjct: 153 EKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVY 212
Query: 285 DKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA--PPHLTWGVRQAHSF 342
+ F L +T+ S+ K + + GW +GW + P L A S
Sbjct: 213 GHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSI 272
Query: 343 ---LTFATSTP--MQWAATAAL-RAPETYYEELKRDYSAKKAILVEGLNAVGFKVFP--S 394
L A P +Q A L + E ++ + A A + L + + P +
Sbjct: 273 KKALNPAPFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKA 332
Query: 395 SGTYFVVVDHTPF---GHETDIAFCEYLIKEVGVVAIP 429
G +F +V E D+ FC L KE ++ +P
Sbjct: 333 EGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILP 370
|
Length = 409 |
| >gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1 | Back alignment and domain information |
|---|
Score = 96.7 bits (240), Expect = 9e-22
Identities = 60/226 (26%), Positives = 117/226 (51%), Gaps = 8/226 (3%)
Query: 103 SMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKK 161
++L + HG ++ +P F +DA + +R GK N Y G G+ A+A +
Sbjct: 67 TILPLGHGDPSV---YPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNR 123
Query: 162 DSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCI 221
D ++ PE ++ +T+GC + I L P ++L P + Y+A + +G +++
Sbjct: 124 DLPHKLTPE-DIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKF 182
Query: 222 TLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFS 280
L P ++ I +E +++ +NT A+++ P+NP G +++ + L +A + ++V S
Sbjct: 183 DLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVIS 242
Query: 281 DEVYDKLAF-EMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGW 325
DEVYD+ F + +S+ + +T+ + K + + GWKIGW
Sbjct: 243 DEVYDRTIFGDNPFVSMGKFASIVP-VLTLAGISKGWVVPGWKIGW 287
|
Length = 462 |
| >gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase | Back alignment and domain information |
|---|
Score = 92.7 bits (230), Expect = 2e-20
Identities = 63/220 (28%), Positives = 113/220 (51%), Gaps = 7/220 (3%)
Query: 112 INLGQGFPN----FDGPDFVKDAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSGLE 166
I+LG G P F ++A + A++ K N YA G+P+ AIA +D +
Sbjct: 34 ISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYK 93
Query: 167 VDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP 226
+ + +V +TSGCT+AI + L PG ++L P + YE + +++ + L P
Sbjct: 94 LSLD-DVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPE 152
Query: 227 D-FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYD 285
+ + ++ +++ +NT A+++ P NP G +++ + L IA + +LV +DEVY
Sbjct: 153 KGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYG 212
Query: 286 KLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGW 325
LAF + + G +T+ SL K + + GW++GW
Sbjct: 213 HLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGW 252
|
Length = 409 |
| >gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 89.4 bits (223), Expect = 1e-19
Identities = 89/317 (28%), Positives = 138/317 (43%), Gaps = 53/317 (16%)
Query: 129 DAAIQAIRDGKNQYAR---GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185
AI+AIR ++ R G G E +A+A +F VDPE + + +G E
Sbjct: 48 PKAIEAIRAAADELHRYPDGSGF-ELKAALAEKFG------VDPE-RIILGNGSDE---- 95
Query: 186 TILGLI-----NPGDEVIL----FAPFYDSYE-ATLSMAGAKIKCITLRPPDFAIPIEEL 235
IL L+ PGDEVI FA Y A GAK + + D+ ++ +
Sbjct: 96 -ILELLARAYLGPGDEVIYSEHGFA----VYPIAAQ-AVGAKP--VEVPAKDYGHDLDAM 147
Query: 236 KSTISKNTRAILMNTPHNPTGKMFTREEL-NVIASLCIENDVLVFSDEVYDK-LAFEMDH 293
+ ++ TR + + P+NPTG EE+ +A + DVLV DE Y + + +
Sbjct: 148 LAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLAG--VPPDVLVVLDEAYAEYVRRKDYE 205
Query: 294 ISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT---WGVRQAHSFLTFATSTP 350
+ L + V + K + L G ++G+ IAPP + VRQ F ++
Sbjct: 206 DGLE-LVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQP-----FNVNSL 259
Query: 351 MQWAATAALRAPETYYEELKRDYSAK-KAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGH 409
AA AAL + E R +A+ A L E L +G + PS G F++VD
Sbjct: 260 ALAAAVAALDDDA--FVEKSRALNAEGMAWLTEFLAELGLEYIPSVGN-FILVDFDD--G 314
Query: 410 ETDIAFCEYLIKEVGVV 426
+ + L+K GV+
Sbjct: 315 KDAAEAYQALLKR-GVI 330
|
Length = 367 |
| >gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 6e-18
Identities = 97/320 (30%), Positives = 141/320 (44%), Gaps = 59/320 (18%)
Query: 130 AAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSG----CTEAIAA 185
AAI G N+Y G E +A+A V PE V V G C + + A
Sbjct: 42 AAIARAAAGVNRYP-DMGAVELRAALAEHL------GVPPE-HVAVGCGSVALCQQLVQA 93
Query: 186 TILGLINPGDEVILFAPFYDSYEA---TLSMAGAKIKCITLRPPDFAIPIEELKSTISKN 242
T PGDEVI FA + S+EA + +AGA + L P D ++ + + I+
Sbjct: 94 TA----GPGDEVI-FA--WRSFEAYPILVQVAGATPVQVPLTP-DHTHDLDAMAAAITDR 145
Query: 243 TRAILMNTPHNPTGKMFTREEL-NVIASLCIENDVLVFSDEVY----------DKLAFEM 291
TR I + P+NPTG + T EL + + + DVLV DE Y D L
Sbjct: 146 TRLIFVCNPNNPTGTVVTPAELARFLDA--VPADVLVVLDEAYVEYVRDDDVPDGLELVR 203
Query: 292 DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPM 351
DH ++ L RT + K + L G ++G+A+ P + +R+ + F+ ++
Sbjct: 204 DHPNVVVL-----RTFS-----KAYGLAGLRVGYAVGHPEVIAALRKVA--VPFSVNSLA 251
Query: 352 QWAATAALRAPETYYEELKR--DYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGH 409
Q AA A+L A + E L+R A++ + L A G+ V PS FV + P G
Sbjct: 252 QAAAIASLAAED---ELLERVDAVVAERDRVRAALRAAGWTVPPSQAN-FVWL---PLGE 304
Query: 410 ETDIAFCEYLIKEVGVVAIP 429
T F E GVV P
Sbjct: 305 RTA-DFAAAA-AEAGVVVRP 322
|
Length = 352 |
| >gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 4e-16
Identities = 86/341 (25%), Positives = 139/341 (40%), Gaps = 35/341 (10%)
Query: 111 AINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGL-EVDP 169
I+L G P P F+KDA + DG Y G+P AIA+ ++ GL +DP
Sbjct: 31 PISLSIGEPKHPTPAFIKDALAANL-DGLASYPTTAGLPALREAIAAWLERRYGLPALDP 89
Query: 170 EKEVTVTSGCTEAIAATILGLINPGDE---VILFAPFYDSYE-ATLSMAGAKIKCITLRP 225
+V +G EA+ A +I+ V+ PFY YE A L +AGA+ + P
Sbjct: 90 ATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAAL-LAGAEPYFLNCDP 148
Query: 226 P-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVY 284
+FA + + + + T+ + + +P NPTG + ++ + +L ++ SDE Y
Sbjct: 149 ANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECY 208
Query: 285 DKLAFEMDHISIASLP-------GMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVR 337
++ F+ + L ++R V +SL K ++ G + G+ L
Sbjct: 209 SEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALL---- 264
Query: 338 QAHSFLTF------ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKV 391
FL + A +Q A+ AA E + E + Y K + L V V
Sbjct: 265 --KKFLLYRTYHGCAMPPAVQAASIAAW-NDEAHVRENRALYREKFDAVTPILAPV-LDV 320
Query: 392 -FPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431
P +G Y P D F L + V +P S
Sbjct: 321 QLPDAGFYLWA--KVP---GDDTEFARRLYADYNVTVLPGS 356
|
Length = 396 |
| >gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 4e-16
Identities = 100/363 (27%), Positives = 143/363 (39%), Gaps = 59/363 (16%)
Query: 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRD-GKNQYARGHGVPEFNS-----AIASRFKK 161
I LG G P V +A A+ + + RG+G PE AIA +
Sbjct: 32 SADIIRLGIGDTTQPLPASVIEAFHNAVDELASPETFRGYG-PEQGYPFLREAIAENDYR 90
Query: 162 DSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGA----- 216
+DPE E+ ++ G + + L P + V + P Y +Y + MAG
Sbjct: 91 G---RIDPE-EIFISDGAKCDVF-RLQSLFGPDNTVAVQDPVYPAYLDSNVMAGRAGVLD 145
Query: 217 ---KIKCITLRP--------PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELN 265
+ IT P P+ EE + I + +P+NPTG + T+E+L
Sbjct: 146 DDGRYSKITYLPCTAENNFIPELP---EE------PHIDIIYLCSPNNPTGTVLTKEQLK 196
Query: 266 VIASLCIENDVLVFSDEVYDKLAFEMD-HI--SIASLPGMYERTVTMNSLGKTFSLTGWK 322
+ E+ L+ D Y AF D + SI +PG + S KT TG +
Sbjct: 197 ELVDYANEHGSLILFDAAYS--AFISDPSLPHSIFEIPGARFCAIEFRSFSKTAGFTGVR 254
Query: 323 IGWAIAPPHLT----------WGVRQAHSFLTFATSTPMQWAATAALRAPETYYE--ELK 370
+GW + P LT W RQ F S P+Q AA A A E E
Sbjct: 255 LGWTVVPKELTYADGHSVIQDWERRQCTKF--NGASYPVQRAAEAGY-AGEGLQPILEAI 311
Query: 371 RDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430
Y IL + L A GFKV+ ++ V TP G + F ++L+ E VV P
Sbjct: 312 SYYMENARILRKALEAAGFKVYGGEHAPYLWV-KTPEG-ISSWDFFDFLLYEYHVVGTPG 369
Query: 431 SVF 433
S F
Sbjct: 370 SGF 372
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402 |
| >gnl|CDD|236009 PRK07392, PRK07392, threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 27/220 (12%)
Query: 194 GDEVILFAPFYDSYEATLSMAGAKIKCITLRP----PDFAIPIEELKSTISKNTRAILMN 249
V L P + Y L GA +K + L P + ++ L ++ N +L+N
Sbjct: 97 LRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQLTPN-DGLLLN 155
Query: 250 TPHNPTGKMFTREELNVIASLCIENDVLVFSDEVY-DKLAFEMDHISIASLPGMYERTVT 308
PHNPTGK+++RE I L +E LV DE + D L + + I L Y +
Sbjct: 156 NPHNPTGKLWSREA---ILPL-LEQFALVVVDEAFMDFLPPDAEQSLIPCLAE-YPNLII 210
Query: 309 MNSLGKTFSLTGWKIGWAIAPP-HL----TWGVRQAHSFLTFATSTPMQWAATAALRAPE 363
+ SL K +SL G ++G+AIA P L W R A AA AAL +
Sbjct: 211 LRSLTKFYSLPGLRLGYAIAHPDRLQRWQQW--RDPWPVNGLA-----AAAAIAALADRD 263
Query: 364 TYYEELKRDY-SAKKAILVEGLNAV-GFKVFPSSGTYFVV 401
+++ + + L +GL ++ G PS+ + +V
Sbjct: 264 --FQQQTWAWLPPAREALFQGLASLPGLTPLPSAANFLLV 301
|
Length = 360 |
| >gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 6e-15
Identities = 58/240 (24%), Positives = 112/240 (46%), Gaps = 24/240 (10%)
Query: 161 KDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKC 220
+DSGLE + + V G E I + +++PGD++I P + Y ++ GA++
Sbjct: 97 EDSGLESE---NILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEV-- 151
Query: 221 ITL-RPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLV 278
I + R PDF++ + + + + + + +P+NP G + + ++L I L +LV
Sbjct: 152 IKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILEL----PILV 207
Query: 279 FSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT---WG 335
DE Y + + + + Y+ + + + K L G ++G+ P + W
Sbjct: 208 VLDEAYIEFSTQESRMKWVK---KYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWR 264
Query: 336 VRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGF-KVFPS 394
+Q ++ ++ A AA AAL P+ Y E++K ++ L L V F + +PS
Sbjct: 265 AKQPYN-VSVAAEV----AACAALSNPK-YLEDVKNALVEERERLFGLLKEVPFLEPYPS 318
|
Length = 380 |
| >gnl|CDD|236128 PRK07908, PRK07908, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 7e-15
Identities = 70/252 (27%), Positives = 107/252 (42%), Gaps = 45/252 (17%)
Query: 169 PEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-- 226
EV + +G E A +L + P ++ P + EA L AG + + L PP
Sbjct: 74 TPDEVLLLAGAAEGFA--LLARLRPRRAAVV-HPSFTEPEAALRAAGIPVHRVVLDPPFR 130
Query: 227 -DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYD 285
D A + + +++ P NPT + E+L +L +LV DE
Sbjct: 131 LDPA--------AVPDDADLVVIGNPTNPTSVLHPAEQL---LALRRPGRILVV-DE--- 175
Query: 286 KLAFEMDHI-----SIA--SLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT--WGV 336
AF D + S+A LPG+ + + SL KT+SL G ++G+A+ P +
Sbjct: 176 --AF-ADAVPGEPESLAGDDLPGV----LVLRSLTKTWSLAGLRVGYALGAPDVLARLTR 228
Query: 337 RQAHSFLTFATSTPMQWAATAALRAPETYYE--ELKRDYSAKKAILVEGLNAVGFKVFPS 394
+AH + T Q A AA AP E +A +A +V GL AVG +V
Sbjct: 229 GRAH----WPVGTL-QLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAVGARVVDP 283
Query: 395 SGTYFVVVDHTP 406
+ FV+V P
Sbjct: 284 AAAPFVLV-RVP 294
|
Length = 349 |
| >gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 76/332 (22%), Positives = 138/332 (41%), Gaps = 36/332 (10%)
Query: 114 LGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEV 173
L G P F+ P F++DA N+Y + G A FK+ +E+ E+
Sbjct: 29 LTIGEPQFETPKFIQDALKNNAHL-LNKYPKSAGEESLREAQRGFFKRRFKIELKEN-EL 86
Query: 174 TVTSGCTEAI----AATILGLINPGDEVILFA-PFYDSYEATLSMAGAKIKCITLRPP-D 227
T G E + + NP I + PFY YE + AK+ + L D
Sbjct: 87 IPTFGTREVLFNFPQFVLFDKQNP---TIAYPNPFYQIYEGAAIASRAKVLLMPLTKEND 143
Query: 228 FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKL 287
F + E + + +++N+P+NPTG+ + EEL L +++D ++ +DE Y ++
Sbjct: 144 FTPSLNEKEL---QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEI 200
Query: 288 AFEMDHISI--ASLP---GMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSF 342
S+ AS+ ++ + +NS+ K S G + G+ + + ++
Sbjct: 201 YENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDASILKKYKAYRTY 260
Query: 343 LTFATSTPMQWAATAA---LRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYF 399
L A+ P+Q AA A E + ++ + IL G + P++ +
Sbjct: 261 LGCASPLPLQKAAAVAWLDDEHAEFFRNIYAKNLKLAREIL-------GITIPPATFYVW 313
Query: 400 VVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431
+ VD+ D F + L + G+ +P S
Sbjct: 314 LPVDN-------DEEFTKKLYQNEGIKVLPGS 338
|
Length = 374 |
| >gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 76/281 (27%), Positives = 119/281 (42%), Gaps = 26/281 (9%)
Query: 146 HGVPEFNSAIASRFKKDSGLEV--DPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPF 203
HG+P F +A+A + G +V DP K V +T+G T A + L PGD +L P+
Sbjct: 86 HGLPAFKNALAEFMSEIRGNKVTFDPNKLV-LTAGATSANETLMFCLAEPGDAFLLPTPY 144
Query: 204 YDSYEATLS-MAGAKIKCITLRPP-DFAIPIEELKSTISK------NTRAILMNTPHNPT 255
Y ++ L G +I I F I L+ + + +L+ P NP
Sbjct: 145 YPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPL 204
Query: 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAF-EMDHISIASL--------PGMYERT 306
G TR ELN++ ++ + SDE+Y F +S+ + + R
Sbjct: 205 GTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRV 264
Query: 307 VTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA-TSTPMQWAATAAL---RAP 362
+ SL K L G+++G AI V A +F S+ Q+ +A L +
Sbjct: 265 HIVYSLSKDLGLPGFRVG-AIYSNDEMV-VSAATKMSSFGLVSSQTQYLLSALLSDKKFT 322
Query: 363 ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVD 403
+ Y EE ++ ++ LV GL A G K S+ F VD
Sbjct: 323 KNYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLFCWVD 363
|
Length = 468 |
| >gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 3e-14
Identities = 70/309 (22%), Positives = 132/309 (42%), Gaps = 24/309 (7%)
Query: 146 HGVPEFNSAIASRFKKDSG--LEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPF 203
HG+ F A+AS ++ G DP++ + +T+G T A L +PGD +++ P+
Sbjct: 95 HGLKSFRQAMASFMEQIRGGKARFDPDR-IVLTAGATAANELLTFILADPGDALLVPTPY 153
Query: 204 YDSYEATLS-MAGAKIKCITLRPPD-FAIPIEELKST------ISKNTRAILMNTPHNPT 255
Y ++ L G KI I + F + + L++ + R +L+ P NP
Sbjct: 154 YPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPL 213
Query: 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM-DHISIASL------PGMYERTVT 308
G R L I + ++ + SDE+Y F + +S+A + G+ ER
Sbjct: 214 GATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHI 273
Query: 309 MNSLGKTFSLTGWKIGWAIA-PPHLTWGVRQAHSFLTFATSTPMQWAATAALRA-PETYY 366
+ SL K L G+++G + + R+ SF ++ T A+ + E Y
Sbjct: 274 VYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLVSSQTQHLLASMLSDEEFTENYI 333
Query: 367 EELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPF----GHETDIAFCEYLIKE 422
+ + ++V+GL G + + F ++ +P E ++A + +++E
Sbjct: 334 RTNRERLRKRYEMIVQGLRRAGIECLKGNAGLFCWMNLSPLLETPTREGELALWDSILRE 393
Query: 423 VGVVAIPTS 431
V + P S
Sbjct: 394 VKLNISPGS 402
|
Length = 447 |
| >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 3e-14
Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 13/231 (5%)
Query: 173 VTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPI 232
V + +G TE I + P +V++ AP + YE L A+I+ L
Sbjct: 74 VILGNGATELIFNIVKVT-KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN 131
Query: 233 EELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD 292
E + I + + + P+NPTG++ ++EE+ I C + ++ + DE + E +
Sbjct: 132 EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENE 191
Query: 293 HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL----TWGVRQAHSFLTFATS 348
IS+ + ++ + + + K F++ G ++G+ + +R+ S TFA
Sbjct: 192 TISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMREPWSINTFAD- 250
Query: 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTY 398
A L + Y ++ + +K L GL+ G KV+ S +
Sbjct: 251 -----LAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVNF 296
|
Length = 354 |
| >gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 3e-14
Identities = 77/305 (25%), Positives = 126/305 (41%), Gaps = 22/305 (7%)
Query: 130 AAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189
AI A D Y G PE + +A L VD E ++ +G E I
Sbjct: 49 EAIAAHLDELALYPDG-YAPELRTKVAKH------LGVDEE-QLLFGAGLDEVIQMISRA 100
Query: 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMN 249
L+NPG ++ P + Y + GA+++ + L+ D +E + I + T+ + +
Sbjct: 101 LLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK--DGGHDLEAMLKAIDEQTKIVWIC 158
Query: 250 TPHNPTGKMFTREEL-NVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVT 308
P+NPTG EEL + + S + + VLV DE Y + D+ L YE +
Sbjct: 159 NPNNPTGTYVNHEELLSFLES--VPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIV 216
Query: 309 MNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEE 368
+ + K + L ++G+ IA L + A F T+ Q+AA AAL + + +E
Sbjct: 217 LRTFSKAYGLAALRVGYGIASEELIEKLNIAR--PPFNTTRIAQYAAIAALE-DQAFLKE 273
Query: 369 LKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428
+ G +PS T F+ VD G + + F E L+K G +
Sbjct: 274 CVEKNAEGLEQYYAFCKEYGLFYYPSQ-TNFIFVD---TGRDANELF-EALLK-KGYIVR 327
Query: 429 PTSVF 433
+
Sbjct: 328 SGAAL 332
|
Length = 359 |
| >gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 8e-13
Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 11/162 (6%)
Query: 132 IQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI 191
+ AI G Y G P A+A+ ++ G+ DP ++ +T G + I +L L+
Sbjct: 101 LNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPS-DIFLTDGASSGIK-LLLQLL 158
Query: 192 --NPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD-FAIPIEELKSTISK------N 242
+P D V++ P Y Y A +++ G K L +++ EEL+ +
Sbjct: 159 IGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGIT 218
Query: 243 TRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVY 284
RA+++ P NPTG++ TR+ + I C E +++ +DEVY
Sbjct: 219 PRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVY 260
|
Length = 481 |
| >gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 3e-12
Identities = 47/202 (23%), Positives = 90/202 (44%), Gaps = 5/202 (2%)
Query: 136 RDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGD 195
R G Y G + +A+R +G VD E+ +T G A+ + + GD
Sbjct: 68 RGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGD 127
Query: 196 EVILFAPFYDSYEATLSMAGAKIKCITL----RPPDFAIPIEELKSTISKNTRAILMNTP 251
+V + P Y + + ++ + L + +++L+ R L + P
Sbjct: 128 KVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNP 187
Query: 252 HNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMN 310
+NP G +++ EE+ IA+L V D++Y +L ++ + + +LP E +T+
Sbjct: 188 NNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIM 247
Query: 311 SLGKTFSLTGWKIGWAIAPPHL 332
KT SL+G+++G A P +
Sbjct: 248 GPSKTESLSGYRLGVAFGSPAI 269
|
Length = 405 |
| >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 14/233 (6%)
Query: 171 KEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAI 230
+ V +G E I +L IN GD VI P + Y +AGA + L+ D+
Sbjct: 77 TNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKE-DYTY 135
Query: 231 PIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAF 289
+ I K + + + P+NPTG + RE+ I + ++ +V DE Y F
Sbjct: 136 DVGSFIKVIEKYQPKLVFLCNPNNPTGSVIERED---IIKIIEKSRGIVVVDEAY----F 188
Query: 290 EMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATST 349
E +I + +E + + +L K F L G ++G+A+A ++ + S + ++
Sbjct: 189 EFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKS--PYNINS 246
Query: 350 PMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVV 401
Q A LR E + + ++ L++ L+ + G KV+PS + +V
Sbjct: 247 LSQVIALKVLRT-GVLKERVNYILNERER-LIKELSKIPGIKVYPSKTNFILV 297
|
Length = 351 |
| >gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 5e-11
Identities = 63/271 (23%), Positives = 117/271 (43%), Gaps = 29/271 (10%)
Query: 169 PEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDF 228
P + + +G + IA ++ PGD V+ P + +E +M GA+++ +T+ P D
Sbjct: 87 PADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTP-DL 145
Query: 229 AIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLA 288
++ L + +++ R ++ + P NP G T ++L + ++V DE Y + A
Sbjct: 146 GFDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVV-DEAYAEYA 204
Query: 289 FEMDHISIA------SLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHS 341
D+ S LP + RT + K + L G ++G+ + P L + + +
Sbjct: 205 AGDDYPSALTLLKARGLPWIVLRTFS-----KAYGLAGLRVGYGLVSDPELVGLLDRVRT 259
Query: 342 FLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAI---LVEGLNAVGFKVFPSSGTY 398
F + Q AA AAL E L + + A L + L +G+++ PS +
Sbjct: 260 --PFNVNGAAQAAALAALDDE----EHLAKGVALALAERERLKKELAEMGYRIAPSRANF 313
Query: 399 FVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429
P A E L+++ GV+ P
Sbjct: 314 LFFDARRPAS-----AVAEALLRQ-GVIVKP 338
|
Length = 371 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-10
Identities = 33/149 (22%), Positives = 49/149 (32%), Gaps = 10/149 (6%)
Query: 171 KEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDS-YEATLSMAGAKIKCI-TLRPPDF 228
+ T A A +L L+ PGDEVI+ A + S Y +AGAK +
Sbjct: 18 DKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYG 77
Query: 229 AIPIEEL-KSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKL 287
+ + L + N I++ G L I + E +L+ D
Sbjct: 78 GLDVAILEELKAKPNVALIVITPNTTSGGV---LVPLKEIRKIAKEYGILLLVDAAS--A 132
Query: 288 AFEMDHISIASLPGMYERTVTMNSLGKTF 316
+P VT SL K
Sbjct: 133 GGASP-APGVLIPEGGADVVTF-SLHKNL 159
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 4e-10
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 29/191 (15%)
Query: 149 PEFNSAIASRFKKDSG-------LEVDPEK----EVTVTSGCTEAIAATILG-LINPGDE 196
PE+ + R K+ SG LE + K + +T+G TEA+ ++G L +
Sbjct: 22 PEWLDEMFERAKEISGRYTYYEWLEEEFSKLFGEPIVITAGITEAL--YLIGILALRDRK 79
Query: 197 VILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTG 256
VI+ Y YE A+I P D E+L+ + +N+ N P+NP G
Sbjct: 80 VIIPRHTYGEYERVARFFAARIIK---GPNDP----EKLEELVERNSVVFFCN-PNNPDG 131
Query: 257 KMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTF 316
K + +EL + + + L+ DE AF +D + P E + + + K++
Sbjct: 132 KFYNFKELKPLLDAVEDRNALLILDE-----AF-IDFVKKPESPE-GENIIKLRTFTKSY 184
Query: 317 SLTGWKIGWAI 327
L G ++G+
Sbjct: 185 GLPGIRVGYVK 195
|
Length = 311 |
| >gnl|CDD|235440 PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 5e-10
Identities = 81/261 (31%), Positives = 111/261 (42%), Gaps = 39/261 (14%)
Query: 154 AIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFA----PFYDSYEA 209
AIA+ + +DPE +V V +G E +A L N D +LF FY Y
Sbjct: 68 AIAAYYG------LDPE-QVFVGNGSDEVLAHAFLAFFNH-DRPLLFPDITYSFYPVY-- 117
Query: 210 TLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIAS 269
+ G + I L DF+I +E+ N I N P+ PTG E I
Sbjct: 118 -AGLYGIPYEEIPLDD-DFSIDVEDYLRP---NGGIIFPN-PNAPTGIALPLAE---IER 168
Query: 270 LCIEN-DVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA 328
+ N D +V DE Y E S L Y + + + K+ SL G ++G+AI
Sbjct: 169 ILAANPDSVVVIDEAYVDFGGE----SAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIG 224
Query: 329 PPHLTWG-VRQAHSFLTFATSTPM----QWAATAALRAPETYYEELKRDYSAKKAILVEG 383
P L R +SF S P+ Q A AA+ E Y+EE + A + LVE
Sbjct: 225 HPELIEALNRVKNSF----NSYPLDRLAQAGAIAAIE-DEAYFEETRAKVIATRERLVEE 279
Query: 384 LNAVGFKVFPSSGTYFVVVDH 404
L A+GF+V PS FV H
Sbjct: 280 LEALGFEVLPSK-ANFVFARH 299
|
Length = 353 |
| >gnl|CDD|181053 PRK07590, PRK07590, L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 8e-10
Identities = 92/355 (25%), Positives = 136/355 (38%), Gaps = 69/355 (19%)
Query: 124 PDFVKDAAIQAIRD-GKNQYARGHGVPEFNS-----AIASRFKKDSGLEVDPEKEVTVTS 177
P V +A +A+ + G + RG+G PE IA + G ++ + E+ ++
Sbjct: 49 PPAVIEAMHKAVDEMGTAETFRGYG-PEQGYDFLREKIAENDYQARGCDISAD-EIFISD 106
Query: 178 G--CTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGA--------KIKCITLRP-- 225
G C IL + P + + + P Y Y T MAG + I P
Sbjct: 107 GAKCD---TGNILDIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCT 163
Query: 226 --PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEV 283
+F + E K I I + P+NPTG + T+E+L EN L+ D
Sbjct: 164 AENNFVPELPEEKVDI------IYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAA 217
Query: 284 YDKLAFEMD----HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT------ 333
Y+ AF D H SI + G E + S KT TG + + + P L
Sbjct: 218 YE--AFISDPSLPH-SIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVPKELKGKTSDG 274
Query: 334 --------WGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRD-------YSAKKA 378
W RQ+ F S +Q AA A Y E K Y
Sbjct: 275 EGVSLNSLWNRRQSTKF--NGVSYIVQRAAEA------VYSPEGKAQIKELIDYYMENAK 326
Query: 379 ILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
I+ EGL + GF+V+ ++ V TP + F + L++E VV P S F
Sbjct: 327 IIREGLESAGFEVYGGVNAPYIWV-KTP-DGMSSWDFFDKLLQEANVVGTPGSGF 379
|
Length = 409 |
| >gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 21/214 (9%)
Query: 124 PDFVKDAAIQAIRDGKN-QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182
PD++K+ + + D K+ Y GV E +A K G ++ P+ ++ +G +A
Sbjct: 50 PDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPD-DIIFFNGLGDA 108
Query: 183 IAATILGLINPGDEVILFAPFYD---SYEATLSMAGAKIKCITLRPPDFAIP-IEELKST 238
IA I GL+ VI +P Y S EA + AG L P + P +++L++
Sbjct: 109 IA-KIYGLLRREARVIGPSPAYSTHSSAEA--AHAGYPPVTYRLDPENNWYPDLDDLENK 165
Query: 239 ISKNTR--AILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAF---EMDH 293
+ N IL+ P NPTG ++ +E L I + E D+ + DE+Y+ + + +
Sbjct: 166 VKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVP 225
Query: 294 IS--IASLPGMYERTVTMNSLGKTFSLTGWKIGW 325
+S I +PG+ + + K G + GW
Sbjct: 226 LSEVIGDVPGI-----ALKGISKELPWPGSRCGW 254
|
Length = 433 |
| >gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 2e-09
Identities = 67/313 (21%), Positives = 128/313 (40%), Gaps = 26/313 (8%)
Query: 146 HGVPEFNSAIASRFKKDSGLEV--DPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPF 203
HG+ +F AIA K G +V DPE+ V ++ G T A + L +PGD ++ +P+
Sbjct: 94 HGLKKFRQAIAHFMGKARGGKVTFDPER-VVMSGGATGANETIMFCLADPGDVFLIPSPY 152
Query: 204 YDSYEATLS-MAGAKIKCITLRPPD-FAIPIEELK------STISKNTRAILMNTPHNPT 255
Y +++ L G +I + D F + ++ +K + +++ P NP
Sbjct: 153 YAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPL 212
Query: 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPG---MYERTVTM-- 309
G M ++ L + ++ + DE+Y F D +S+A + + E V +
Sbjct: 213 GTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIH 272
Query: 310 --NSLGKTFSLTGWKIGWAIA-PPHLTWGVRQAHSFLTFATSTPMQWAATAA-LRAPETY 365
SL K L G+++G + + R+ SF ++ T + A+ + + + +
Sbjct: 273 IVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSFGLVSSQTQLMLASMLSDDQFVDNF 332
Query: 366 YEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPF-----GHETDIAFCEYLI 420
E R + + G+ S+ F +D E++I +I
Sbjct: 333 LMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIII 392
Query: 421 KEVGVVAIPTSVF 433
+V + P S F
Sbjct: 393 DKVKLNVSPGSSF 405
|
Length = 496 |
| >gnl|CDD|173269 PRK14808, PRK14808, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 3e-09
Identities = 58/235 (24%), Positives = 92/235 (39%), Gaps = 22/235 (9%)
Query: 170 EKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFA 229
+ V+V +G E I +L D + F P Y Y GAK + L D
Sbjct: 76 KNNVSVGNGADEIIYVMMLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVPL-TKDLR 130
Query: 230 IPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAF 289
IP + + + P+NPTG +F REE+ I ++ V DE Y +
Sbjct: 131 IPEVNVGEG-----DVVFIPNPNNPTGHVFEREEIERI----LKTGAFVALDEAY----Y 177
Query: 290 EMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATST 349
E S L YE + + K FSL +IG+ ++ + L F S
Sbjct: 178 EFHGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVR--LPFNVSY 235
Query: 350 PMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTY-FVVVD 403
Q A AL E + E K ++ + L +G+++ S G + F+ ++
Sbjct: 236 VSQMFAKVALDHREIFEERTKFIVEERER-MKSALREMGYRITDSRGNFVFIFME 289
|
Length = 335 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 43/173 (24%), Positives = 66/173 (38%), Gaps = 24/173 (13%)
Query: 124 PDFVKDAAIQAIRDGKNQYARGHGVP--------EFNSAIASRFKKDSGLEVDPEKEVTV 175
P V DA + R RG E +RF L D E+
Sbjct: 35 PQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARF-----LNADSSDEIVF 89
Query: 176 TSGCTEAI---AATILGLINPGDEVILFAPFYDSYEATLSMA----GAKIKCITLRPPDF 228
T G TEA+ A + + PGDE+++ + S GAK++ I L
Sbjct: 90 TRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGL 149
Query: 229 AIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSD 281
+ ++ L+ I+ T+ + ++ N TG T + IA L E+ LV D
Sbjct: 150 -LDLDALEKLITPKTKLVALSHVSNVTG---TVNPVKEIAELAHEHGALVLVD 198
|
Length = 405 |
| >gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 5e-09
Identities = 63/241 (26%), Positives = 105/241 (43%), Gaps = 20/241 (8%)
Query: 167 VDPEKEVTVTSGCTEAIAATILGLINPGDEVIL-FAPFYDSYEATLSMAGAKIKCITLRP 225
V PE+ +T + G EAI I PG + I F P Y Y + +K + L
Sbjct: 75 VAPEQILT-SRGADEAIELLIRAFCEPGQDSIACFGPTYGMYAISAETFNVGVKALPL-T 132
Query: 226 PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL-NVIASLCIENDVLVFSDEVY 284
D+ +P++ ++ + + + P+NPTG + R ++ +I D +V DE Y
Sbjct: 133 ADYQLPLDYIEQL--DGAKLVFICNPNNPTGTVIDRADIEQLIEMT---PDAIVVVDEAY 187
Query: 285 DKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT 344
+ F ++ S+A L Y V + +L K F+L G + G+ +A L + +
Sbjct: 188 --IEFCPEY-SVADLLASYPNLVVLRTLSKAFALAGARCGFTLANEELIEILMRV--IAP 242
Query: 345 FATSTPMQWAATAALRAPETYYEELKR---DYSAKKAILVEGLNAVGF-KVFPSSGTYFV 400
+ P+ AT AL E +K D +A+ A L L+ G KV +G Y +
Sbjct: 243 YPVPLPVSEIATQALS--EAGLARMKFQVLDLNAQGARLQAALSMYGGAKVLEGNGNYVL 300
Query: 401 V 401
Sbjct: 301 A 301
|
Length = 354 |
| >gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 6e-09
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 19/160 (11%)
Query: 138 GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI-NPGDE 196
G Y+ G+P +A ++ G DPE + +T G ++ + + +I D
Sbjct: 99 GLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQILNAVIRGEKDG 157
Query: 197 VILFAPFYDSYEATLSMAGAKIKCITLRP------PDFAIPIEELKSTIS------KNTR 244
V++ P Y Y AT+S+ G TL P ++ + + L+ +++ R
Sbjct: 158 VLVPVPQYPLYSATISLLGG-----TLVPYYLEESENWGLDVNNLRQSVAQARSKGITVR 212
Query: 245 AILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVY 284
A+++ P NPTG+ + L I C + +++ DEVY
Sbjct: 213 AMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVY 252
|
Length = 407 |
| >gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 8e-09
Identities = 63/295 (21%), Positives = 113/295 (38%), Gaps = 43/295 (14%)
Query: 142 YARGHGVPEFNSAIASR-FKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILF 200
YA G+PE + +++ L VT+ T ++ ++ GD V+L
Sbjct: 40 YAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLLP 99
Query: 201 APFYDSYEATLS-MAGAKIKCITLRPPDFAIPIEELKSTI---SKNTRAILM-NTPHNPT 255
+ +Y+ T + GA+I + D + LK + + I++ N P+NPT
Sbjct: 100 DHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPT 159
Query: 256 GKMFTREELNVIASLCIE-----NDVLVFSDEVYDKLAFEMD-HISI-ASLPGMYER--T 306
G T +E I E V+ D+ Y L +E S+ A+L ++
Sbjct: 160 GYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILA 219
Query: 307 VTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA----------------TSTP 350
V ++ K + G+++G+ +T+G + S P
Sbjct: 220 VKLDGATKEEFVWGFRVGF------ITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHP 273
Query: 351 MQWAATAALRAPET------YYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYF 399
Q A AL +PE ++ LK Y K +L +G ++ +P + YF
Sbjct: 274 SQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYF 328
|
Length = 388 |
| >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 8e-09
Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 6/201 (2%)
Query: 171 KEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAI 230
++V SG E I ++ GD ++ + Y + G ++K + L +
Sbjct: 82 EQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN--NGVY 139
Query: 231 PIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE 290
++E+ S + +T+ + + P+NPTG +L EN ++V DE Y +
Sbjct: 140 DLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENTLIVI-DEAYYEYVTA 198
Query: 291 MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTP 350
D L ++ + + + K + L +++G+A+ L + L F S+
Sbjct: 199 KDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVR--LPFNVSSL 256
Query: 351 MQWAATAALRAPETYYEELKR 371
Q AAT A E + EE+ R
Sbjct: 257 AQKAATIAFGDDE-FIEEIVR 276
|
Length = 366 |
| >gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 9e-09
Identities = 57/237 (24%), Positives = 103/237 (43%), Gaps = 25/237 (10%)
Query: 130 AAIQAIRD---GKNQYARG-HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185
AA++AIR+ + Y + H + +A+A R+ +V PE +V + +G A+
Sbjct: 47 AAVEAIREAAERVHSYPKASHA--DLTAALADRW------DVSPE-QVWLANGGDGALDY 97
Query: 186 TILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKN--- 242
+++PGD V++ P + Y + +++ + D E+ T+
Sbjct: 98 LARAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKAD---DFEQTADTVLDAYDG 154
Query: 243 TRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM 302
R + + +PHNPTG +E+ +A + + LV DE Y + A + S +L
Sbjct: 155 ERIVYLTSPHNPTGSEIPLDEVEALAER-TDEETLVVVDEAYGEFA---ERPSAVALVEE 210
Query: 303 YERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAAL 359
+ + + K + L G ++G+A+ P W A FA S A AAL
Sbjct: 211 RDDVAVLRTFSKAYGLAGLRLGYAVVPE--EWADAYARVNTPFAASELACRAGLAAL 265
|
Length = 357 |
| >gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 9e-09
Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 21/209 (10%)
Query: 121 FDGPDFVKDAAIQAIRD-GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGC 179
FD P+ +K+ + ++ N+Y AIA +D E + V +G
Sbjct: 30 FDLPEELKEEIFEELKRVPFNRYPH-ITSDPLREAIAEF------YGLDAEN-IAVGNGS 81
Query: 180 TEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTI 239
E I+ ++ L G +++ P + Y + G + + L+ DF I E +
Sbjct: 82 DELIS-YLVKLFE-GKHIVITPPTFGMYSFYAKLNGIPVIDVPLKE-DFTIDGERIAE-K 137
Query: 240 SKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASL 299
+KN A+ + +P+NPTG + EE+ + +E V DE Y E S+ L
Sbjct: 138 AKNASAVFICSPNNPTGNLQPEEEILKV----LETGKPVVLDEAY----AEFSGKSLIGL 189
Query: 300 PGMYERTVTMNSLGKTFSLTGWKIGWAIA 328
Y + + + K F L G + G+AIA
Sbjct: 190 IDEYPNLILLRTFSKAFGLAGIRAGYAIA 218
|
Length = 337 |
| >gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 24/163 (14%)
Query: 121 FDGPDFVKDAAIQAIRDGKNQYARGHGVP---EFNSAIASRFKKDSGLEVDPEKEVTVTS 177
F P D A+R+G Y+R G P +A+ LE E + +S
Sbjct: 15 FPSPAEAADL--FALREGGYIYSR-IGNPTVDALEKKLAA-------LEGG-EAALAFSS 63
Query: 178 GCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIK--CITLRPPDFAIPIEEL 235
G AI+ +L L+ GD V+ D Y T + + I + D P E L
Sbjct: 64 G-MAAISTVLLALLKAGDHVVASD---DLYGGTYRLFERLLPKLGIEVTFVDPDDP-EAL 118
Query: 236 KSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLV 278
++ I T+ + + +P NPT K+ E IA L E+ L+
Sbjct: 119 EAAIKPETKLVYVESPTNPTLKVVDIEA---IAELAHEHGALL 158
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369 |
| >gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-08
Identities = 57/246 (23%), Positives = 102/246 (41%), Gaps = 27/246 (10%)
Query: 167 VDPEKEVTVTSGCTEAIAATILGLINPGDEVILFA-PFYDSYEATLSMAGAKIKCITLRP 225
V PE +V V+ G E I I PG + IL+ P Y Y + G +I+ +
Sbjct: 72 VKPE-QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTL- 129
Query: 226 PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYD 285
++ + + + + + + + +P+NPTG + ++L + L +V +DE Y
Sbjct: 130 DNWQLDLPAIADNLD-GVKVVYVCSPNNPTGNLINPQDLRTLLEL-TRGKAIVVADEAY- 186
Query: 286 KLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT 344
E S+A Y V + +L K F+L G + G+ +A + + L
Sbjct: 187 ---IEFCPQASLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVI-------NLLL 236
Query: 345 -----FATSTPMQWAATAALRAPE--TYYEELKRDYSAKKAILVEGLNAVGF--KVFPSS 395
+ STP+ A AL +P+ E + +A + L+ L + +VF S
Sbjct: 237 KVIAPYPLSTPVADIAAQAL-SPQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDSE 295
Query: 396 GTYFVV 401
Y +
Sbjct: 296 TNYILA 301
|
Length = 351 |
| >gnl|CDD|235053 PRK02610, PRK02610, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 71/277 (25%), Positives = 106/277 (38%), Gaps = 47/277 (16%)
Query: 140 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKE-VTVTSGCTEAI----AATILGLINPG 194
N+Y G AIA + + ++V +G E I AT LG G
Sbjct: 61 NRYPDGGHEA-LKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLG----G 115
Query: 195 DEVILFAPFYDSYEATLSMAGAKIKCITL---------RPPDFAIPIEELKSTISKNT-- 243
+ IL A E T SM G I TL P F I + +S I +
Sbjct: 116 EGSILVA------EPTFSMYG--ILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNP 167
Query: 244 --RAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPG 301
R + + P++PTG T EL + SL D+LV DE Y FE ++
Sbjct: 168 PVRVVFVVHPNSPTGNPLTAAELEWLRSL--PEDILVVIDEAY----FEFSQTTLVGELA 221
Query: 302 MYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTW---GVRQAHSFLTFATSTPMQWAATAA 358
+ V + + K F L ++G+AI P L VR ++ +F+ Q AA A
Sbjct: 222 QHPNWVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVRLPYNLPSFS-----QLAAQLA 276
Query: 359 LRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPS 394
L + + + L + L + +V+PS
Sbjct: 277 LEHRQELLAAIPEILQERDR-LYQALQELPQLRVWPS 312
|
Length = 374 |
| >gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 59/272 (21%), Positives = 106/272 (38%), Gaps = 15/272 (5%)
Query: 130 AAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189
AA A R E + + F GL P V +G +E + +L
Sbjct: 60 AARDAAARSAALSGRYD--LELEDDLRTLFAAQEGL---PADHVMAYAGSSEPLNYAVLA 114
Query: 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMN 249
+P ++ P Y++ GA + + LR D A ++ + + N I +
Sbjct: 115 FTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLR-ADGAHDVKAMLAA-DPNAGLIYIC 172
Query: 250 TPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTM 309
P+NPTG + R ++ + + VL+ DE Y + D S+ L + + +
Sbjct: 173 NPNNPTGTVTPRADIEWLLANKPAGSVLLV-DEAYIHFS---DAPSVVDLVAQRKDLIVL 228
Query: 310 NSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEEL 369
+ K + + G ++G A A P L + + F P A A+LR P+ +
Sbjct: 229 RTFSKLYGMAGMRLGLAAARPDL---LAKLARFGHNPLPVPAAAAGLASLRDPKLVPQRR 285
Query: 370 KRDYSAKKAILVEGLNAVGFKVFPSSGTYFVV 401
+ + ++ + L G+K PS F+V
Sbjct: 286 AENAAVREDT-IAWLKKKGYKCTPSQANCFMV 316
|
Length = 370 |
| >gnl|CDD|235115 PRK03317, PRK03317, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 31/215 (14%)
Query: 224 RPPDFAIPIEELKSTISKNTRAI-LMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDE 282
R DF + ++ + I+++ + + +P+NPTG T L+ + ++ +V DE
Sbjct: 141 RAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTG---TALPLDDVEAILDAAPGIVVVDE 197
Query: 283 VYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSF 342
Y + ++ LP Y R V ++ K F+ G ++G+ A P + +R
Sbjct: 198 AYAEFRRSGTPSALTLLPE-YPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRLVR-- 254
Query: 343 LTFATSTPMQWAATAALR-APET--YYEELK--RDYSAKKAILVEGLNAVGFKVFPSSGT 397
L + S Q AA AALR A E L+ RD +V L +G +V P S
Sbjct: 255 LPYHLSAVTQAAARAALRHADELLASVAALRAERDR------VVAWLRELGLRVAP-SDA 307
Query: 398 YFVVVDHTPFGHETD--IAFCEY-----LIKEVGV 425
FV+ FG D + LI++VG+
Sbjct: 308 NFVL-----FGRFADRHAVWQGLLDRGVLIRDVGI 337
|
Length = 368 |
| >gnl|CDD|235311 PRK04781, PRK04781, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 3e-07
Identities = 54/233 (23%), Positives = 93/233 (39%), Gaps = 17/233 (7%)
Query: 178 GCTEAIAATILGLINPG-DEVILFAPFYDSYEATLSMAGAKIKCITL--RPPDFAIPIEE 234
G EAI + L PG D V++ P + Y + A + + L F +
Sbjct: 84 GSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPA 143
Query: 235 L-KSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH 293
+ + ++ N + + + +P NP G +++ ++ LV DE Y + + D
Sbjct: 144 IVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQ-ALQGKALVVVDEAYGEFS---DV 199
Query: 294 ISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQW 353
S L Y+ + +L K +L +IG IA L +R+ + + TP
Sbjct: 200 PSAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRCQA--PYPVPTPCAA 257
Query: 354 AATAALRAP-----ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVV 401
A AL AP E++ + A L L V +V+PS G + +V
Sbjct: 258 LAEQALSAPALAVTARRVAEVRAERERLHAALA-QLPGVR-RVYPSQGNFLLV 308
|
Length = 364 |
| >gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 3e-07
Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 170 EKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFA 229
E V +SG AIAAT+L ++ GD +I Y A L A K I + + A
Sbjct: 75 EAAVATSSG-MGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFG-IQVDFINMA 132
Query: 230 IPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVY 284
IP EE+K+ I NT+ + TP NPT K+ E + A V V D +
Sbjct: 133 IP-EEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAH---SQGVKVIVDNTF 183
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine [Energy metabolism, Amino acids and amines]. Length = 391 |
| >gnl|CDD|99740 cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 8e-07
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 26/159 (16%)
Query: 128 KDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA--IAA 185
+A + + G G V EF A A + + V V+SG T A +A
Sbjct: 2 LEAVEEVLDSG--WLTLGPKVREFEKAFAEY--------LGVKYAVAVSSG-TAALHLAL 50
Query: 186 TILGLINPGDEVILFAPFYDSYEAT---LSMAGAKIKCITLRPPDFAIPIEELKSTISKN 242
LG I PGDEVI+ F ++ AT + + GA + + P + I E +++ I+
Sbjct: 51 RALG-IGPGDEVIV-PSF--TFVATANAILLLGATPVFVDIDPDTYNIDPELIEAAITPR 106
Query: 243 TRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSD 281
T+AI+ P + G + + IA + + V D
Sbjct: 107 TKAII---PVHLYGNPADMDAIMAIAK---RHGLPVIED 139
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD. Length = 352 |
| >gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 14/113 (12%)
Query: 173 VTVTSGCTEAIAATILGLINPGDEVI----LFAPFYDSYEATLSMAGAKIKCITLRPPDF 228
+ +SG AI A +L L+ GD V+ L+ Y +E L G I + D
Sbjct: 71 LAFSSG-MAAIFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFG-----IEVTFVDP 124
Query: 229 AIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSD 281
+ + L++ I NT+A+ + TP NP K+ ++ IA + ++ LV D
Sbjct: 125 SDL-DALEAAIKPNTKAVFLETPTNPLLKVV---DIEAIAKIAKKHGALVVVD 173
|
This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382 |
| >gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 169 PEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDF 228
P + +G TE+I A + GL P +I+ P + Y L G +I+ +LR D
Sbjct: 71 PASWILAGNGETESIFAVVSGL-KPRRAMIV-TPGFAEYRRALQQVGCEIRRYSLREADG 128
Query: 229 AIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVY-DKL 287
+ + ++ + + + TP+NPTG + R+ L IA C ++ + DE + D +
Sbjct: 129 WQLTDAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFI 188
Query: 288 AFEMDHI-SIASLPGMYERTVTMNSLGKTFSLTGWKIGW 325
E I +A P ++ + SL K +++ G ++G+
Sbjct: 189 PDETGFIPQLADNPHLW----VLRSLTKFYAIPGLRLGY 223
|
Length = 356 |
| >gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 6e-06
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 13/198 (6%)
Query: 142 YARGHGVPEFNSAIASR-FKKDSGLEVDPEKEVTV-TSGCTEA--IAATILGLINPGDEV 197
Y G+PEF A+ F DS + ++ TV T G T A +AA L P V
Sbjct: 65 YLPIEGLPEFLEAVQKLLFGADSPA-LAEDRVATVQTLGGTGALRVAADFLARFFPDATV 123
Query: 198 ILFAPFYDSYEATLSMAGAKIKCITL-----RPPDFAIPIEELKSTISKNTRAILMNTPH 252
+ P + +++A AG +++ + DF + +LK T + + +L H
Sbjct: 124 WISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLK-TAPEGSVVLLHGCCH 182
Query: 253 NPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLA--FEMDHISIASLPGMYERTVTMN 310
NPTG T E+ +A L E ++ F D Y A E D ++ + + +
Sbjct: 183 NPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVAS 242
Query: 311 SLGKTFSLTGWKIGWAIA 328
S K F L G ++G
Sbjct: 243 SFSKNFGLYGERVGALSV 260
|
Length = 396 |
| >gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 8/105 (7%)
Query: 182 AIAATILGLINPGDEVILFAPFYDSYEATLSMAGA--KIKCITLRPPDFAIPIEELKSTI 239
AI+ +L L+ GD V+L D Y T + + + + D +
Sbjct: 90 AISTALLALLKAGDHVLLPD---DLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIK 146
Query: 240 SKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVY 284
NT+ + + TP NP ++ ++ IA L LV D +
Sbjct: 147 EPNTKLVFLETPSNPLLEVP---DIPAIARLAKAYGALVVVDNTF 188
|
Length = 396 |
| >gnl|CDD|223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 26/174 (14%)
Query: 112 INLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEK 171
+ P+ + A + ++ G G V F A A +
Sbjct: 4 NKIPFSRPSIGEEE--LAAVQEVLKSGW--LTGGPFVRRFEQAFAEYLG--------VKY 51
Query: 172 EVTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSM---AGAKIKCITLRPPD 227
V V+SG T A+ +L L I PGDEVI+ F ++ AT + GAK + + P
Sbjct: 52 AVAVSSG-TAALHLALLALAIGPGDEVIV-PSF--TFVATANAVLLVGAKPVFVDIDPDT 107
Query: 228 FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSD 281
I + +++ I+ T+AI+ P + G+ +++ I +L + + V D
Sbjct: 108 LNIDPDLIEAAITPRTKAII---PVHLAGQPC---DMDAIMALAKRHGLPVIED 155
|
Length = 374 |
| >gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 9/151 (5%)
Query: 142 YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI-NPGDEVILF 200
Y+ G+ AIA+ + G DP ++ +T G + A+ + LI + D ++
Sbjct: 164 YSHSQGIKGLRDAIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSEKDGILCP 222
Query: 201 APFYDSYEATLSMAGAKIKCITL-RPPDFAIPIEELKSTISK------NTRAILMNTPHN 253
P Y Y A++++ G + L + + I ELK + RA+++ P N
Sbjct: 223 IPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGN 282
Query: 254 PTGKMFTREELNVIASLCIENDVLVFSDEVY 284
PTG++ E I C + +++ +DEVY
Sbjct: 283 PTGQVLAEENQRDIVEFCKQEGLVLLADEVY 313
|
Length = 534 |
| >gnl|CDD|216261 pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase family | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 173 VTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMA---GAKIKCITLRPPDF 228
+ V+SG T A+ + L I PGDEVI+ F ++ AT + GA + + P +
Sbjct: 43 LAVSSG-TSALHLALRALGIGPGDEVIV-PAF--TFVATANAVLQLGATPVFVDVDPDTY 98
Query: 229 AIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSD 281
I +++ I+ T+AI+ P + G+ + + IA+ E+ + V D
Sbjct: 99 NIDPAAIEAAITPRTKAIM---PVHLYGQPADMDAIRAIAA---EHGLPVIED 145
|
The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA, StsC and StsS. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase EC:2.6.1.50, which catalyzes the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin. Length = 362 |
| >gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 54/257 (21%), Positives = 96/257 (37%), Gaps = 48/257 (18%)
Query: 123 GPDFVKDAAIQAIRDGKNQYAR---GHGVPEFNSAIASRFKKDSG-LEVDPEKEVTVTSG 178
GP V + A+ AR GH P+F + +K + V ++
Sbjct: 12 GPVPVPPRVLLAM-------ARPMVGHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGS 64
Query: 179 CTEAIAATILGLINPGDEVILFA--PFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELK 236
T A+ A + L+ PGD+V++ F + + GA++ + + A+ EE++
Sbjct: 65 GTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEV-EWGEAVDPEEVE 123
Query: 237 STISKNTRAILMNTPHN--PTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHI 294
+ K+ + HN TG L IA E+ L+ D
Sbjct: 124 EALDKDPDIKAVAVVHNETSTG---VLNPLKEIAKAAKEHGALLIVD------------- 167
Query: 295 SIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWA 354
+++SL G + ++ G ++TG + APP G L F +
Sbjct: 168 AVSSLGGEPLK---VDEWGIDVAITGSQKALG-APP----G-------LAFVAVSERALE 212
Query: 355 ATAALRAPETYYEELKR 371
A R ++Y +LK+
Sbjct: 213 AIEE-RKHPSFYLDLKK 228
|
Length = 383 |
| >gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 7e-05
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 170 EKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFA 229
E V + SG AI AT+ L+ PGDEVI+ Y A L + +T+R D
Sbjct: 81 EAAVALASG-MGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFG-VTVRHVDLT 138
Query: 230 IPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVY 284
P LK+ IS TR + TP NP ++ ++ +A + V D Y
Sbjct: 139 DP-AALKAAISDKTRMVYFETPANPNMRLV---DIAAVAEIAHGAGAKVVVDNTY 189
|
Length = 403 |
| >gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 9e-05
Identities = 40/173 (23%), Positives = 64/173 (36%), Gaps = 21/173 (12%)
Query: 121 FDGPDFVKDAAIQAIRDGKNQYARG---------HGVPEFNSAIASRFKKDSGLEVDPEK 171
+ PD V +A ++ RG V E +A F S
Sbjct: 10 YPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPS------SA 63
Query: 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAK--IKCITLRP-PDF 228
V T+ T A+ + GL+ GD VI ++S L + ++ ++ +
Sbjct: 64 HVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEG 123
Query: 229 AIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSD 281
I E +K I NT+ I+++ N TG + EE I L EN + D
Sbjct: 124 LISPERIKRAIKTNTKLIVVSHASNVTGTILPIEE---IGELAQENGIFFILD 173
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown [Unknown function, Enzymes of unknown specificity]. Length = 376 |
| >gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 51/207 (24%), Positives = 79/207 (38%), Gaps = 48/207 (23%)
Query: 110 GAINLGQG----FPNFDGPDFVKDAAIQAIRDGK-----NQYARGHGVPEFNSAIASRFK 160
GAI LG G P + D+ +D + GK Y G E A+A+
Sbjct: 31 GAIMLGGGNPAHIPEME--DYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLN 88
Query: 161 KDSGLEVDPEKEVTVTSGCTEA--IAATILGLINPGDEV--ILF--APFY---------- 204
+ G + P+ + +T+G A + + ILF AP Y
Sbjct: 89 ERYGWNISPQ-NIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEE 147
Query: 205 DSYEATLSMAGAKIKCITLRP-------PDFAIPIEELKSTISKNTRAILMNTPHNPTGK 257
D + + I L P DF E L I ++T AI ++ P NPTG
Sbjct: 148 DLFVSYRPN-------IELLPEGQFKYHVDF----EHLH--IDEDTGAICVSRPTNPTGN 194
Query: 258 MFTREELNVIASLCIENDVLVFSDEVY 284
+ T EEL + +L ++++ + D Y
Sbjct: 195 VLTDEELEKLDALARQHNIPLLIDNAY 221
|
Length = 416 |
| >gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 183 IAATILGLINPGDEVILFAPFYDS----YEATLSMAGAKIKCITLRPPDFAIPIEELKST 238
++ I PGDEVI+ +++ + AGAK+K + + ++L S
Sbjct: 93 LSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASL 152
Query: 239 ISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEV 283
+S TR + + N G + +L I L LV D V
Sbjct: 153 LSPRTRLVAVTAASNTLGSI---VDLAAITELVHAAGALVVVDAV 194
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase [Unknown function, Enzymes of unknown specificity]. Length = 397 |
| >gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 24/128 (18%)
Query: 168 DPEKEVTVTSGCTEAI--AATILGL--INPGDEVIL--------FAPFYDSYEATLSMAG 215
++E+ T G TE+I A G + GDE+++ P+ E T G
Sbjct: 78 ASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERT----G 133
Query: 216 AKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPH--NPTGKMFTREELNVIASLCIE 273
A +K I L D + +++L+ +++ T+ L+ H N G T + IA L +
Sbjct: 134 ATLKFIPLD-DDGTLDLDDLEKLLTEKTK--LVAITHVSNVLG---TVNPVEEIAKLAHQ 187
Query: 274 NDVLVFSD 281
V D
Sbjct: 188 VGAKVLVD 195
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 167 VDPEKEVTVTSGCTEAIAATILGL---INPGDEVIL--------FAPFYDSYEATLSMAG 215
++E+ TSG TEAI + L + PGDE+++ P+ + + T G
Sbjct: 58 APSDEEIIFTSGTTEAINLVAISLGRSLKPGDEILVTEMEHHANLVPWQELAKRT----G 113
Query: 216 AKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIEND 275
A ++ I + P+ + ++ L+ ++ T+ + + N TG T + I L E
Sbjct: 114 ATVRVIPVD-PNGLLDLDALEKLLTPRTKLVAITHVSNVTG---TVNPVEEIGKLAHEYG 169
Query: 276 VLVFSD 281
LV D
Sbjct: 170 ALVVVD 175
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 55/258 (21%), Positives = 96/258 (37%), Gaps = 62/258 (24%)
Query: 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKST--ISKNTR 244
+L IN G+ +I+ P ++ Y+ G +I A+P + + I N
Sbjct: 73 LLSYINVGNIIIV-EPNFNEYKGYAFTHGIRIS---------ALPFNLINNNPEILNNYN 122
Query: 245 --AILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM 302
I + +P NP G + +R+ L I+ +C + L+F DE + +D +P
Sbjct: 123 FDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAF------IDF-----VPNR 171
Query: 303 YERTVTMN----------SLGKTFSLTGWKIGWAIAPPHLT---------WGVRQAHSFL 343
E V +N SL K + +IG+ + W V +
Sbjct: 172 AEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMKISRKITEPWSVCD--PAI 229
Query: 344 TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVD 403
F S + + A +L E +++ L+ L A+GF+ F+
Sbjct: 230 DFIRSIDLDYVAKHSLDIME-----------NERSYLINNLEAMGFRAAGDPSANFITF- 277
Query: 404 HTPFGHETDIAFCEYLIK 421
P H+ F YL+K
Sbjct: 278 MIPDAHD----FYSYLLK 291
|
Length = 332 |
| >gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 7e-04
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 15/148 (10%)
Query: 165 LEVDPEKEVTVTSGCTEAIAATILGLINPGDE-----VILFAPFYDSYEATLSMAGAKIK 219
L D E EV TSG TE+ ILGL G++ +I A + + +
Sbjct: 55 LGADTE-EVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGF 113
Query: 220 CITLRPPDFA--IPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVL 277
+T P D + I ++EL I +T + + +N TG + + + IA + ++
Sbjct: 114 TVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETG---SIQPIREIAEVLEAHEAF 170
Query: 278 VFSD--EVYDKLAFEM--DHISIASLPG 301
D +V K+ ++ D I + S G
Sbjct: 171 FHVDAAQVVGKITVDLSADRIDLISCSG 198
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase [DNA metabolism, Restriction/modification]. Length = 353 |
| >gnl|CDD|131432 TIGR02379, ECA_wecE, TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 7e-04
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 171 KEVTVTSGCTEAIA-ATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFA 229
K+ +T CT A+ A +L I PGDEVI+ + + S + GAKI + +RP
Sbjct: 47 KKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMN 106
Query: 230 IPIEELKSTISKNTRAI 246
I ++S I+ T+AI
Sbjct: 107 IDETLIESAITHRTKAI 123
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 376 |
| >gnl|CDD|179888 PRK04870, PRK04870, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 8e-04
Identities = 57/250 (22%), Positives = 102/250 (40%), Gaps = 31/250 (12%)
Query: 163 SGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCIT 222
+ + V +V + +G E I L PG V+ P + Y + +AG + +
Sbjct: 74 AAMGVPAGADVLLGNGSDELIQLLALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVP 133
Query: 223 LRPPDFAIPIEELKSTISKNTRAIL-MNTPHNPTGKMFTREELNVIASLCIE-NDVLVFS 280
L DF + + + + I+++ A++ + P+NPTG +F ++ I IE LV
Sbjct: 134 LTA-DFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERI----IEAAPGLVVV 188
Query: 281 DEVYDKLAFE--MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTW---- 334
DE Y A + + + + + M ++ K L G ++G+ P W
Sbjct: 189 DEAYQPFAGDSWLPRL------ARFPNLLVMRTVSK-LGLAGLRLGYLAGHP--AWIAEL 239
Query: 335 -GVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVF 392
VR + + Q A AL + + A++ L L A+ G VF
Sbjct: 240 DKVR-----PPYNVNVLTQATALFALEHVDV-LDAQAAQLRAERTRLAAALAALPGVTVF 293
Query: 393 PSSGTYFVVV 402
PS+ F++V
Sbjct: 294 PSAAN-FILV 302
|
Length = 356 |
| >gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 182 AIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK 241
AI+AT++G + GD +I Y L + K IT D ++++ I
Sbjct: 88 AISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFM-ITHSFCDME-TEADIENKIRP 145
Query: 242 NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVY 284
NT+ I + TP NPT K+ +L + + N +LV D +
Sbjct: 146 NTKLIFVETPINPTMKLI---DLKQVIRVAKRNGLLVIVDNTF 185
|
Length = 386 |
| >gnl|CDD|180188 PRK05664, PRK05664, threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 37/113 (32%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 251 PHNPTGKMFTREEL-NVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERT--V 307
P+NPTG+ F L A L LV DE AF MD+ SL R +
Sbjct: 133 PNNPTGRRFDPARLLAWHARLAARGGWLVV-DE-----AF-MDNTPQHSLAACAHRPGLI 185
Query: 308 TMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALR 360
+ S GK F L G ++G+ +A P L + + + S P +W A AAL
Sbjct: 186 VLRSFGKFFGLAGARLGFVLAEPALLRALAELLG--PWTVSGPTRWLAQAALA 236
|
Length = 330 |
| >gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 170 EKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT----LSMAGAKIKCITLRP 225
E V SG AI++++ + GD V+ Y A L+ G ++ +
Sbjct: 80 EAAVVAASG-MGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSN 138
Query: 226 PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVY 284
EE+++ + NT+ + + TP NPT K+ + ++ IA + + LVF D +
Sbjct: 139 L------EEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNK-ECLVFVDNTF 190
|
Length = 400 |
| >gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 15/109 (13%)
Query: 179 CTEAIAA--TILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP--DFAIPIEE 234
C+ +AA ++ L GDE+I+ + D Y T + K +R + A ++
Sbjct: 73 CSSGMAAIQLVMSLFRSGDELIVSS---DLYGGTYRLFEEHWKKWNVRFVYVNTA-SLKA 128
Query: 235 LKSTISKNTRAILMNTPHNPTGKMFTREELNV--IASLCIENDVLVFSD 281
++ I+ NT+AI + TP NP M +E ++ IA + ++ +L+ D
Sbjct: 129 IEQAITPNTKAIFIETPTNPL--M---QETDIAAIAKIAKKHGLLLIVD 172
|
Length = 366 |
| >gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 71/343 (20%), Positives = 114/343 (33%), Gaps = 69/343 (20%)
Query: 123 GPDFVKDAAIQAIRDGKNQYARGHGVPEF---NSAIASRFKKDSGLEVDPEKEVTVTSGC 179
GP V ++A+ N+ GH PEF I + + SG
Sbjct: 6 GPSNVPPRVLKAM----NRPMLGHRSPEFLALMDEILEGLRYVFQ---TENGLTFLLSGS 58
Query: 180 -TEAIAATILGLINPGDEVILFA--PFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELK 236
T A+ A + L+ PGD+V++ F D + GA + + +P A+ EE+
Sbjct: 59 GTGAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAERYGADVDVVE-KPWGEAVSPEEIA 117
Query: 237 STISKNTRAILMNTPHN--PTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHI 294
+ ++ + T HN TG + E I +L ++D L+ D
Sbjct: 118 EALEQHDIKAVTLT-HNETSTGVLNPLEG---IGALAKKHDALLIVD------------- 160
Query: 295 SIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGV-------------RQAHS 341
+++SL G R M+ G + TG + APP L +
Sbjct: 161 AVSSLGGEPFR---MDEWGVDVAYTGSQKALG-APPGLGPIAFSERALERIKKKTKPKGF 216
Query: 342 FL--------------TFAT-STPMQWAATAALR-APETYYEELKRDYSAKKAILVEGLN 385
+ T + +A AL E E + L EGL
Sbjct: 217 YFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLE 276
Query: 386 AVGFKVFPSSGTYFVVVDH--TPFGHETDIAFCEYLIKEVGVV 426
A+G K+ V P G + D L+K +
Sbjct: 277 ALGLKLLAKPELRSPTVTAVLVPEGVDGD-EVVRRLMKRYNIE 318
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. Length = 356 |
| >gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 65/255 (25%), Positives = 101/255 (39%), Gaps = 49/255 (19%)
Query: 110 GAINLGQG----FPNFDGPDFVKDAAIQAIRDGK-----NQYARGHGVPEFNSAIASRFK 160
GAI LG G P D D+ +D + + GK Y G A+A +
Sbjct: 31 GAIMLGGGNPARIPEMD--DYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLR 88
Query: 161 KDSGLEVDPEKEVTVTSGCTEA---IAATILGLINPGDE-VILF--APFYDSYEATLSMA 214
++ G + + + +T+G A + G + G E IL AP Y Y A
Sbjct: 89 REYGWNITA-QNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGY------A 141
Query: 215 GAKIK---CITLRP-------------PDFAIPIEELKSTISKNTRAILMNTPHNPTGKM 258
A ++ ++ +P DF E L I ++T AI ++ P NPTG +
Sbjct: 142 DAGLEEDLFVSAKPNIELLPAGQFKYHVDF----EHLH--IGESTGAICVSRPTNPTGNV 195
Query: 259 FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSL 318
T EEL + +L ++ + + D Y + F S A+ P E + SL K L
Sbjct: 196 LTDEELAKLDALARQHGIPLIIDNAY-GVPFPGIIFSDAT-PLWNENIILCMSLSK-LGL 252
Query: 319 TGWKIGWAIAPPHLT 333
G + G IA +
Sbjct: 253 PGSRCGIIIANEKVI 267
|
Length = 417 |
| >gnl|CDD|185378 PRK15481, PRK15481, transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 55/270 (20%), Positives = 101/270 (37%), Gaps = 37/270 (13%)
Query: 144 RGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPF 203
R +G + + + + + E+ +TSG +AI + + PGD V + P
Sbjct: 115 RLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPC 174
Query: 204 YDSYEATLSMAGAKIKCITLRPPDFAI-----PIEELKSTISKNTRAILMNTP--HNPTG 256
+ S L AG ++ E+L+ +++ RA+++ TP HNPTG
Sbjct: 175 FLSSINMLRYAG-------FSASPVSVDAEGMQPEKLERALAQGARAVIL-TPRAHNPTG 226
Query: 257 KMFTREELNVIASLCIEN-DVLVFSDEVYDKLAFEMDHISIAS-------LPGMYERTVT 308
+ + +L VLV D DH ++ S +P +R
Sbjct: 227 CSLSARRAAALRNLLARYPQVLVIID----------DHFALLSSSPYHSVIPQTTQRWAL 276
Query: 309 MNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYE- 367
+ S+ K ++ + + + +R + T S +Q A L PE
Sbjct: 277 IRSVSKALG-PDLRLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARL 335
Query: 368 -ELKRDYSAKKAILVEGLNAVGFKVFPSSG 396
+ + Y+ ++ L L G + PS G
Sbjct: 336 AQARLFYAQRRQKLARALQQYGIAI-PSPG 364
|
Length = 431 |
| >gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.003
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 19/122 (15%)
Query: 171 KEVTVTSGCTEAI---AATILGLINPGDEVIL--------FAPFYDSYEATLSMAGAKIK 219
E+ T TEAI A + PGDE++ P+ E T GAK+K
Sbjct: 62 DEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERT----GAKLK 117
Query: 220 CITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVF 279
+ + D + +E L+ +++ T+ + + N G + +E I + E V V
Sbjct: 118 VVPVD-DDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKE---IGEIAHEAGVPVL 173
Query: 280 SD 281
D
Sbjct: 174 VD 175
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373 |
| >gnl|CDD|235897 PRK06959, PRK06959, putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.004
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 20/144 (13%)
Query: 226 PDFA------IPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL-NVIASLCIENDVLV 278
P FA +P++E T+ +++ P+NPT + L A L L+
Sbjct: 108 PAFARHGHRVVPLDEAADTLPAALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLI 167
Query: 279 FSDEVYDKLAFEMDHISIASL---PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG 335
DE + A + S+A+ PG+ V + S+GK F L G + G+ +A P L
Sbjct: 168 V-DEAF---ADTLPAASLAAHTDRPGL----VVLRSVGKFFGLAGVRAGFVLAAPALLAA 219
Query: 336 VRQAHSFLTFATSTPMQWAATAAL 359
+R A T S P + A AA
Sbjct: 220 LRDALGAWT--VSGPARHAVRAAF 241
|
Length = 339 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 434 | |||
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 100.0 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 100.0 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 100.0 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 100.0 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 100.0 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 100.0 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 100.0 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.97 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.97 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.97 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.97 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.97 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.97 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.97 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.97 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.96 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.96 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.96 | |
| PLN02721 | 353 | threonine aldolase | 99.96 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.96 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.96 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.96 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.95 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.95 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.95 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.95 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.95 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.95 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.95 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.94 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.94 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.94 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.94 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.94 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.94 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.94 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.94 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.94 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.94 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.94 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.94 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.94 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.94 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.93 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.93 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.93 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.93 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.93 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.93 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.93 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.93 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.93 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.93 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.93 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.92 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.92 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.92 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.92 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.92 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.92 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.91 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.91 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.91 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.91 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.91 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.91 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.91 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.91 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.91 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.91 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.9 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.9 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.9 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.9 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.9 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.9 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.9 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.89 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.89 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.89 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.89 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.89 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.88 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.88 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.88 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.88 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.88 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.88 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.88 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.88 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.87 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.87 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.87 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.87 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.87 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.87 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.87 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.87 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.87 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.87 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.87 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.87 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.87 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.87 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.86 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.86 | |
| PLN02651 | 364 | cysteine desulfurase | 99.86 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.86 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.86 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.86 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.86 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.86 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.85 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.85 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.85 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.85 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.85 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.85 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.85 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.84 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.84 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.83 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.83 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.83 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.82 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.82 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.82 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.82 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.82 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.82 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.81 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.81 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.81 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.81 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.81 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.8 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.8 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.8 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.8 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.8 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.8 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.8 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.79 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.79 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.79 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.79 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.78 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.77 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.77 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.76 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.76 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.75 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.75 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.75 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.75 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.75 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.74 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.73 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.73 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.72 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.72 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.72 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.71 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.71 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.71 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.7 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.7 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.7 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.7 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.69 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.69 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.69 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.69 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.69 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.68 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.68 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.68 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.68 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.67 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.67 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.67 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.67 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.67 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.66 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.66 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.66 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.65 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.65 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.65 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.65 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.65 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.65 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.65 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.64 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.64 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.64 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.63 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.63 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.63 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.63 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.63 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.63 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.63 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.62 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.62 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.62 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.62 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.62 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.61 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.61 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.61 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.6 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.6 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.6 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.6 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.59 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.59 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.59 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.59 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.57 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.57 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.57 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.56 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.56 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.56 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.56 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.56 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.56 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.56 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.55 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.54 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.54 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.53 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.52 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.51 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.51 | |
| PLN02263 | 470 | serine decarboxylase | 99.49 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.47 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.46 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.46 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.46 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.46 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.46 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.45 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.45 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.44 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.44 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.44 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.43 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.41 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.39 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.38 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.38 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.35 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.34 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.34 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.34 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.32 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 99.31 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.27 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 99.26 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.24 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.22 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.2 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.14 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.13 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.1 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.98 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.98 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.95 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 98.91 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 98.87 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.86 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.86 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.85 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 98.82 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 98.81 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.65 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.39 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.31 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.01 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 97.86 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 97.74 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 97.55 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 96.95 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 96.5 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 96.08 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 95.45 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 94.99 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 92.24 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 87.43 | |
| COG2102 | 223 | Predicted ATPases of PP-loop superfamily [General | 84.74 |
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-61 Score=472.95 Aligned_cols=324 Identities=39% Similarity=0.738 Sum_probs=302.9
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
.++|||++|+|++++|+.+.+++.+++.++...|.+..|+++||+++++++.+.+|..++++++|++|+|+++++..++.
T Consensus 28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~ 107 (393)
T COG0436 28 EDVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFL 107 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHH
Confidence 37999999999999999999999999988644777999999999999999999999999998569999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC--CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP--PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~--~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
++++|||+|++++|.|+.|...+..+|++++.++++. .+|.+|++.+++++++++|+|++++||||||.+++++++++
T Consensus 108 a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~ 187 (393)
T COG0436 108 ALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKA 187 (393)
T ss_pred HhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHH
Confidence 9999999999999999999999999999999999864 37999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeC-hhhHHHHHHHhhccc
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLT 344 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~~ 344 (434)
|+++|++||++||.||+|.+|.|++. +.++..+.+..+++|.++||||.++|+|||+||++++ +++++.+.+++....
T Consensus 188 i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~~~~~ 267 (393)
T COG0436 188 IVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLT 267 (393)
T ss_pred HHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChHHHHHHHHHHHHhcc
Confidence 99999999999999999999999984 7777777665689999999999999999999999999 889999999999999
Q ss_pred cCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhC-CCEeec-CCeeEEEeeecCCCCCCCHHHHHHHHH
Q 013883 345 FATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAV-GFKVFP-SSGTYFVVVDHTPFGHETDIAFCEYLI 420 (434)
Q Consensus 345 ~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ll 420 (434)
++++.+.|.++..+|+.. .++++.+++.|++||+.+.+.|.+. ||.+.. ++|+||+|++++.. .++.+|+.+|+
T Consensus 268 ~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~--~d~~~f~~~Ll 345 (393)
T COG0436 268 SCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPEL--LDSEEFAKKLL 345 (393)
T ss_pred cCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCC--CCHHHHHHHHH
Confidence 999999999999999987 3588889999999999999999987 599988 89999999998654 47899999999
Q ss_pred HhcCeEEECCCCCC
Q 013883 421 KEVGVVAIPTSVFY 434 (434)
Q Consensus 421 ~~~GV~v~pG~~F~ 434 (434)
+++||.|+||+.|+
T Consensus 346 ~~~gV~v~PG~~Fg 359 (393)
T COG0436 346 EEAGVAVVPGSGFG 359 (393)
T ss_pred HhCCEEEecccccC
Confidence 99999999999995
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-60 Score=443.47 Aligned_cols=345 Identities=46% Similarity=0.810 Sum_probs=317.3
Q ss_pred HhhhccccHHHHHHHHhhcCCeeE-eCCCCCCCCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCC
Q 013883 90 RLEKFKTTIFTQMSMLAIKHGAIN-LGQGFPNFDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEV 167 (434)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~i~-l~~g~p~~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~ 167 (434)
+++.....++.++.+++...+..+ |++|.|++++|+.+.+++++++.+. .++|.+.+|+++|+++|++.+...+|..+
T Consensus 11 ~l~~~~~~vw~e~~~la~e~~~~~~LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~ 90 (420)
T KOG0257|consen 11 NLSTSKPYVWTEINRLAAEHKVPNPLGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLL 90 (420)
T ss_pred cccccCCcHHHHHHHHHHhcCCCCcccCCCCCCCCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhcccc
Confidence 344445567778888877777778 9999999999999999999999885 78999999999999999999999999999
Q ss_pred CCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcC-------CCCCCCCHHHHHhhcc
Q 013883 168 DPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLR-------PPDFAIPIEELKSTIS 240 (434)
Q Consensus 168 ~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~-------~~~~~~d~~~l~~~i~ 240 (434)
+++++|++|.|+.+++..++++++++||+|++.+|.|..|...+.++|..++.|+.. .++|.+|++.++.+++
T Consensus 91 ~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t 170 (420)
T KOG0257|consen 91 DPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKIT 170 (420)
T ss_pred CCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhcc
Confidence 998899999999999999999999999999999999999999999999999999988 4679999999999999
Q ss_pred cCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccc
Q 013883 241 KNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLT 319 (434)
Q Consensus 241 ~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~ 319 (434)
++||+|++|+||||||.++++|++++|+++|++||+++|.||+|..+.|++. +..+..+++++++++.++||+|+||++
T Consensus 171 ~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~T 250 (420)
T KOG0257|consen 171 EKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVT 250 (420)
T ss_pred CCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeee
Confidence 9999999999999999999999999999999999999999999999999985 788999999999999999999999999
Q ss_pred cceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCCh--------HHHHHHHHHHHHHHHHHHHHhhhCCCEe
Q 013883 320 GWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPE--------TYYEELKRDYSAKKAILVEGLNAVGFKV 391 (434)
Q Consensus 320 G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~--------~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 391 (434)
|||+||+++++.+...++.++....+..+++.|.|.++++.... .+..++...|+++|+.|.+.|.++|+++
T Consensus 251 GWrlGW~igp~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg~~v 330 (420)
T KOG0257|consen 251 GWRLGWAIGPKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEELGLKV 330 (420)
T ss_pred eeeeeeeechHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999988887643 4456699999999999999999999999
Q ss_pred ecCCeeEEEeeecC-----CC--C---CCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 392 FPSSGTYFVVVDHT-----PF--G---HETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 392 ~~~~~~~~~~~~~~-----~~--~---~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
..++|++|+|++++ ++ + ..++..++..|+++.||.+.|++.||
T Consensus 331 ~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~ 383 (420)
T KOG0257|consen 331 TGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFG 383 (420)
T ss_pred ccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcC
Confidence 99999999999987 11 1 11456789999999999999999998
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-57 Score=451.25 Aligned_cols=353 Identities=88% Similarity=1.358 Sum_probs=320.9
Q ss_pred CCchHHHHHhhhccccHHHHHHHHhhcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHh
Q 013883 82 LQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKK 161 (434)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 161 (434)
...+.+.+++...+...+..+......++.|||+.|.|++++++.+.+++.+++.++...|++..|.++||+++++++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~ 106 (413)
T PLN00175 27 QQPLQVAKRLEKFKTTIFTQMSSLAIKHGAINLGQGFPNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKK 106 (413)
T ss_pred CcccchhHHhhcCCCCHHHHHHHHhhcCCeEecCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHH
Confidence 44455677777777777888877777789999999999999999999999998887667899999999999999999999
Q ss_pred hcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc
Q 013883 162 DSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK 241 (434)
Q Consensus 162 ~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~ 241 (434)
.+|.+++++++|++|+|+++++.+++.+++++||+|++++|+|..|...++..|++++.++++++++++|++.+++.+.+
T Consensus 107 ~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~ 186 (413)
T PLN00175 107 DTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTS 186 (413)
T ss_pred HhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCc
Confidence 99998988756999999999999999999999999999999999999999999999999999876789999999999988
Q ss_pred CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccc
Q 013883 242 NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGW 321 (434)
Q Consensus 242 ~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~ 321 (434)
++++|++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++.+.++..+.+..+++|+++||||.|+++|+
T Consensus 187 ~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~ 266 (413)
T PLN00175 187 KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGW 266 (413)
T ss_pred CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcch
Confidence 99999999999999999999999999999999999999999999999876656666666556899999999999999999
Q ss_pred eeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEe
Q 013883 322 KIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVV 401 (434)
Q Consensus 322 R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 401 (434)
|+||+++++++++.+...+....++.+.+.|.++..+|++.+.+++++++.|+++++.+.+.|++.|+.+.+++|+||+|
T Consensus 267 RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~g~~f~~ 346 (413)
T PLN00175 267 KIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEVGFKVYPSSGTYFVM 346 (413)
T ss_pred heeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEE
Confidence 99999999999999998888778999999999999999887788999999999999999999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 402 VDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 402 ~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+++.+.+..++.+++++|++++||.+.||+.||
T Consensus 347 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~ 379 (413)
T PLN00175 347 VDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFY 379 (413)
T ss_pred EeccccCCCCHHHHHHHHHHhCCEEEeCchHhC
Confidence 997554544578999999988899999999885
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-52 Score=412.93 Aligned_cols=344 Identities=29% Similarity=0.558 Sum_probs=299.7
Q ss_pred HHhhhccccHHHHHHHHh-hcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCC
Q 013883 89 KRLEKFKTTIFTQMSMLA-IKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEV 167 (434)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~ 167 (434)
+++.........++.... ..++.|||+.|.|++++++.+.+.+..........|++..|.++||+++++++.+.+|..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~ 87 (384)
T PRK06348 8 KKYQQMEVNIMAEIATLAKKFPDIIDLSLGDPDLITDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSF 87 (384)
T ss_pred HHHhcCCccHHHHHHHHHHhcCCcEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCC
Confidence 334344444444444433 2357899999999998888877766666555567899999999999999999998899999
Q ss_pred CCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEE
Q 013883 168 DPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAI 246 (434)
Q Consensus 168 ~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i 246 (434)
+++ +|++|+|+++++..++.+++++||+|++++|+|..+...+...|++++.+++++ +++.+|++.+++++++++++|
T Consensus 88 ~~~-~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v 166 (384)
T PRK06348 88 KRN-EIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAI 166 (384)
T ss_pred Chh-hEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEE
Confidence 998 899999999999999999999999999999999999999999999999998753 467899999999998899999
Q ss_pred EecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeE
Q 013883 247 LMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWA 326 (434)
Q Consensus 247 ~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~ 326 (434)
++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++...++..+.+..+++++++||||.+|++|+|+||+
T Consensus 167 ~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~ 246 (384)
T PRK06348 167 ILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYV 246 (384)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceee
Confidence 99999999999999999999999999999999999999999887655555566544689999999999999999999999
Q ss_pred EeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecC
Q 013883 327 IAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHT 405 (434)
Q Consensus 327 ~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 405 (434)
++++++++.+...+....++.+.+.|.++..+|.+.+++++++++.++++++.+.+.|++. ++.+.+++||||+|++++
T Consensus 247 v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~~~~~~ 326 (384)
T PRK06348 247 IAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKGSIYAFINIK 326 (384)
T ss_pred ecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEecc
Confidence 9999999999888877778899999999999998878889999999999999999999886 788889999999999985
Q ss_pred CCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 406 PFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 406 ~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
..+. ++.++++++++++||.+.||+.|+
T Consensus 327 ~~~~-~~~~l~~~l~~~~gv~v~pg~~f~ 354 (384)
T PRK06348 327 KTGL-SSVEFCEKLLKEAHVLVIPGKAFG 354 (384)
T ss_pred cCCC-CHHHHHHHHHHhCCEEEcCchhhc
Confidence 4333 578899999888899999999884
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-52 Score=415.09 Aligned_cols=348 Identities=42% Similarity=0.740 Sum_probs=308.3
Q ss_pred HHHHhhhccccHHHHHHHHhhcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCC
Q 013883 87 VAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLE 166 (434)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~ 166 (434)
.+.++.+.+..++..+..+....++|+|+.|.|++++++.+.+++.+.+......|.+..|.++||+++++++.+.+|..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~ 87 (386)
T PRK09082 8 PQSKLPNVGTTIFTVMSALAAEHGAINLSQGFPDFDGPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQ 87 (386)
T ss_pred hhhHhhccCccHHHHHHHHHhhCCEEEecCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCC
Confidence 34455555566666666655566899999999999988999999998887766789999999999999999999888988
Q ss_pred CCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEE
Q 013883 167 VDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAI 246 (434)
Q Consensus 167 ~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i 246 (434)
.+++++|++|+|+++++.+++..++++||+|++++|+|..+...++..|++++.++.+++++.+|++.+++.++++++++
T Consensus 88 ~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v 167 (386)
T PRK09082 88 YDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISPRTRLI 167 (386)
T ss_pred CCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcCccceEE
Confidence 77754799999999999999999999999999999999999999999999999999986678999999999998899999
Q ss_pred EecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeee
Q 013883 247 LMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGW 325 (434)
Q Consensus 247 ~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~ 325 (434)
++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+.+..+++++++||||.+|++|+|+||
T Consensus 168 ~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~ 247 (386)
T PRK09082 168 ILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGY 247 (386)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhh
Confidence 9999999999999999999999999999999999999999998653 445555655568999999999999999999999
Q ss_pred EEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecC
Q 013883 326 AIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHT 405 (434)
Q Consensus 326 ~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 405 (434)
+++++++++.+++......++++.+.|.++..+|+..++++++++..++++++.+.+.|++.|+.+.+++|+||+|++++
T Consensus 248 iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~ 327 (386)
T PRK09082 248 CVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANSRFKLLPCEGTYFQLVDYS 327 (386)
T ss_pred hhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCeeEEEEEecc
Confidence 99999999999988877788999999999999998557788999999999999999999999999999999999999986
Q ss_pred CCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 406 PFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 406 ~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+....++.+++++|++++||.+.||+.|+
T Consensus 328 ~~~~~~~~~~~~~l~~~~~v~v~pg~~f~ 356 (386)
T PRK09082 328 AISDLDDVEFCQWLTREHGVAAIPLSVFY 356 (386)
T ss_pred ccCCCCHHHHHHHHHHhCCEEEeCcHHhC
Confidence 43223578899998888999999999884
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-52 Score=411.29 Aligned_cols=328 Identities=38% Similarity=0.682 Sum_probs=290.3
Q ss_pred hhcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 106 AIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 106 ~~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
....+.|+|+.|.|++++++.+.+++.+++.+....|++..|.++||+++++++.+.+|..++++++|++|+|+++++..
T Consensus 26 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~ 105 (384)
T PRK12414 26 AAQHDALNLSQGAPNFAPDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYA 105 (384)
T ss_pred HHhCCeEEcCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHH
Confidence 34457899999999999899999999888776667899999999999999999999889877763379999999999999
Q ss_pred HHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHH
Q 013883 186 TILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 186 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
++++++++||+|++++|+|..+...++..|++++.++++++++.+|++.+++++++++++|++++||||||.+++.++++
T Consensus 106 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~ 185 (384)
T PRK12414 106 AISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLA 185 (384)
T ss_pred HHHHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHH
Confidence 99999999999999999999999999999999999999866788999999999988999999999999999999999999
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccc
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT 344 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~ 344 (434)
+|+++|++||++||+||+|.++.|++. ..++..+....+++++++||||.||++|+|+||+++++++++.+........
T Consensus 186 ~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~~~~~~~~ 265 (384)
T PRK12414 186 RLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQFMV 265 (384)
T ss_pred HHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCHHHHHHHHHHHhhee
Confidence 999999999999999999999988763 2344444444578999999999999999999999999999999998887778
Q ss_pred cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcC
Q 013883 345 FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVG 424 (434)
Q Consensus 345 ~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~G 424 (434)
++.+.+.|.++..+|+++.. ..++++.|+++++.+.+.|++.|+.+.+++|+||+|+++.+....++.+++.++++++|
T Consensus 266 ~~~s~~~q~a~~~~l~~~~~-~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~g 344 (384)
T PRK12414 266 FSADTPMQHAFAEALAEPAS-YLGLGAFYQRKRDLLARELAGSRFELLPSEGSFFMLARFRHFSDESDSDFVLRLIRDAR 344 (384)
T ss_pred cCCCcHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHHHHHHhCCCeecCCCcceEEEEcccccCCCCHHHHHHHHHHhCC
Confidence 89999999999999987553 44678899999999999999999999999999999998754322246788878888889
Q ss_pred eEEECCCCCC
Q 013883 425 VVAIPTSVFY 434 (434)
Q Consensus 425 V~v~pG~~F~ 434 (434)
|.+.||+.|+
T Consensus 345 V~v~pg~~f~ 354 (384)
T PRK12414 345 VATIPLSAFY 354 (384)
T ss_pred EEEecchhhc
Confidence 9999999874
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-52 Score=412.44 Aligned_cols=327 Identities=26% Similarity=0.424 Sum_probs=284.7
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
+.++|+|+.|.|++++++.+.+++.+.+.+. ...|++..|.++||+++++++.+.+|+.++++++|++|+|+++++.++
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~ 108 (388)
T PRK07366 29 GKELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHL 108 (388)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHH
Confidence 4578999999999999999999998887643 467999999999999999999998999898874599999999999999
Q ss_pred HHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC-CCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHH
Q 013883 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 187 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
+.+++++||+|++++|+|+.|...++..|++++.+|++++ ++.+|++.+++.+.+++++|++++||||||.+++.++++
T Consensus 109 ~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s~~~~~ 188 (388)
T PRK07366 109 PLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQ 188 (388)
T ss_pred HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCCccCCHHHHH
Confidence 9999999999999999999999999999999999999853 477899999888877899999999999999999999999
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCC--CccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcc
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMD--HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL 343 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~--~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~ 343 (434)
+|+++|++||++||+||+|.+|.+++. ..++..+....+++++++||||.||++|+|+||+++++++++++.+.+...
T Consensus 189 ~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~li~~l~~~~~~~ 268 (388)
T PRK07366 189 EAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNAQLIQALRQVKAVV 268 (388)
T ss_pred HHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcCCHHHHHHHHHHHhhc
Confidence 999999999999999999999998764 334555544456789999999999999999999999999999998888766
Q ss_pred ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhc
Q 013883 344 TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEV 423 (434)
Q Consensus 344 ~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~ 423 (434)
..+.....+.++..+|.+.+++++++++.++++++.+.+.|++.|+.+..+++++|+|+++++....++.+++++|++++
T Consensus 269 ~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~l~~~~ 348 (388)
T PRK07366 269 DFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQIGWPVPLPEATMYVWAKLPEPWQGNSVEFCTQLVAQT 348 (388)
T ss_pred ccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeEEEEEECCcccCCCHHHHHHHHHHhC
Confidence 66654545556666666557899999999999999999999999998888999999999986421124678888888888
Q ss_pred CeEEECCCCCC
Q 013883 424 GVVAIPTSVFY 434 (434)
Q Consensus 424 GV~v~pG~~F~ 434 (434)
||.+.||+.|+
T Consensus 349 gv~v~pg~~f~ 359 (388)
T PRK07366 349 GVAASPGSGFG 359 (388)
T ss_pred CEEEeCchHhC
Confidence 99999998873
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=410.40 Aligned_cols=344 Identities=47% Similarity=0.843 Sum_probs=300.4
Q ss_pred hhhccccHHHHHHHHhhcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCC
Q 013883 91 LEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPE 170 (434)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~ 170 (434)
++..+...+..+......+++++|+.|.|+.+.++.+.+.+.+.+.+....|++..|.++||+++++++++.+|..++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~ 87 (387)
T PRK08912 8 FADLPTTIFEVMSQLAREHGAINLGQGFPDDPGPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPE 87 (387)
T ss_pred HhhCCCCHHHHHHHHHhhCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCc
Confidence 33334444444555455568999999999988788888888887766667899999999999999999998889888886
Q ss_pred CcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecC
Q 013883 171 KEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNT 250 (434)
Q Consensus 171 ~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~ 250 (434)
++|++|+|+++++.+++..++++||+|++++|+|+.+..+++..|++++.++++++++++|++.+++.++++++++++++
T Consensus 88 ~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~ 167 (387)
T PRK08912 88 TEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNN 167 (387)
T ss_pred ccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhCccceEEEEeC
Confidence 57999999999999999999999999999999999999999999999999999766789999999999988999999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC-CCccccCCCCCCCceEEEccCChhhccccceeeeEEeC
Q 013883 251 PHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM-DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP 329 (434)
Q Consensus 251 p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~ 329 (434)
||||||.+++.+++++|+++|++||++||+||+|.++.+++ ...++..+.+..+++++++||||.||++|+|+||++++
T Consensus 168 p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~ 247 (387)
T PRK08912 168 PLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAA 247 (387)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecC
Confidence 99999999999999999999999999999999999998875 33445555444578999999999999999999999999
Q ss_pred hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCC-
Q 013883 330 PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFG- 408 (434)
Q Consensus 330 ~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~- 408 (434)
+++++.+........++.+...|.++..+|...++++++++++++++++.+.+.|++.|+.+.+++|+||+|+++++.+
T Consensus 248 ~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~g~~~l~~~l~~~~~ 327 (387)
T PRK08912 248 PPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRIGFPVLPSQGTYFLTVDLAPLGL 327 (387)
T ss_pred HHHHHHHHHHHhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEecccccCC
Confidence 9999999887776677888888999988887767889999999999999999999999999999999999999986533
Q ss_pred CCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 409 HETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 409 ~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
..++.+++++|++++||.+.||..|+
T Consensus 328 ~~~~~~~~~~l~~~~gV~v~pg~~f~ 353 (387)
T PRK08912 328 AEDDVAFCRRLVEEAGVAAIPVSAFY 353 (387)
T ss_pred CCCHHHHHHHHHhcCCEEEecchhhC
Confidence 23577899998888899999999884
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-51 Score=406.86 Aligned_cols=325 Identities=24% Similarity=0.444 Sum_probs=286.8
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
+++.|+|+.|.|+.+.++.+.+++.+++... ...|++..|.++||+++++++.+.+|.+++++++|++|+|+++++..+
T Consensus 31 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~ 110 (389)
T PRK08068 31 GHDVINLGQGNPDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVEL 110 (389)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHH
Confidence 4578999999999888888888888887653 467999999999999999999988898888864699999999999999
Q ss_pred HHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC-CCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHH
Q 013883 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 187 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
+.+++++||+|++++|+|..|...++..|++++.+|++++ ++.+|++.+++.+.+++++|++++||||||.+++.++++
T Consensus 111 ~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~ 190 (389)
T PRK08068 111 PQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKAFFE 190 (389)
T ss_pred HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccccceEEEEECCCCCCCCcCCHHHHH
Confidence 9999999999999999999999999999999999999753 678899999999988899999999999999999999999
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCC-CCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccc
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEM-DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT 344 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~ 344 (434)
+|+++|++||++||+||+|.++.+++ ...++....+..+++++++||||.||++|+|+||+++++++++.+........
T Consensus 191 ~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~l~~~~~~~~ 270 (389)
T PRK08068 191 ETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNESVIEAINLLQDHLF 270 (389)
T ss_pred HHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEecCHHHHHHHHHHHhhcc
Confidence 99999999999999999999988865 23343333334568899999999999999999999999999999988877666
Q ss_pred cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcC
Q 013883 345 FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVG 424 (434)
Q Consensus 345 ~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~G 424 (434)
.+.+.+.|.++..+|.+..+++++++++++++++.+.+.|++.|+.+.+++|++|+|+++++ + .++.+++++|++++|
T Consensus 271 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~~~~g~~~~~v~~~~-~-~~~~~~~~~l~~~~g 348 (389)
T PRK08068 271 VSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACREIGWEVDAPKGSFFAWMPVPK-G-YTSEQFADLLLEKAH 348 (389)
T ss_pred CCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeEEEEEECCC-C-CCHHHHHHHHHHhCC
Confidence 66677788888888876678899999999999999999999999998899999999998853 2 257889999988789
Q ss_pred eEEECCCCCC
Q 013883 425 VVAIPTSVFY 434 (434)
Q Consensus 425 V~v~pG~~F~ 434 (434)
|.|.||+.|.
T Consensus 349 i~v~pg~~f~ 358 (389)
T PRK08068 349 VAVAPGNGFG 358 (389)
T ss_pred EEEecchHhC
Confidence 9999998773
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-51 Score=405.00 Aligned_cols=324 Identities=31% Similarity=0.574 Sum_probs=291.3
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
++.|+|+.|.|++++++.+.+++.+++.+....|.+..|.++||+++++++++.+|..++++++|++|+|+++++.+++.
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~ 99 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMR 99 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHH
Confidence 47899999999998888888888888776567799989999999999999999889888876479999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
+++++||+|++++|+|+.+...++..|.+++.++.+. +++++|++.+++++.++++++++++||||||.+++.+++++|
T Consensus 100 ~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~~~~l 179 (378)
T PRK07682 100 AIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEI 179 (378)
T ss_pred HhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHHHHHHH
Confidence 9999999999999999999999999999999999864 368999999999998899999999999999999999999999
Q ss_pred HHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCC
Q 013883 268 ASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT 347 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~ 347 (434)
+++|++|++++|+||+|.++.+++...++..+.+..+++++++||||.||++|+|+||+++++++++.+........+++
T Consensus 180 ~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~~~~~~~~~~ 259 (378)
T PRK07682 180 AVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQYSMMCA 259 (378)
T ss_pred HHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999987654455555554578999999999999999999999999999999988776666788
Q ss_pred chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEE
Q 013883 348 STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVA 427 (434)
Q Consensus 348 ~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v 427 (434)
+.+.|.++..+|++.+.+++++++.++++++.+.+.|++.|+.+.+++|+||+|+.+.+.+. ++.+++++|++++||.+
T Consensus 260 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~g~~~~~~~~~~~~~-~~~~~~~~ll~~~gv~v 338 (378)
T PRK07682 260 PTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEIGLTCHVPGGAFYAFPSISSTGL-SSEEFAEQLLLEEKVAV 338 (378)
T ss_pred CHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHCCCccCCCCeeEEEEEeccCCCC-CHHHHHHHHHHhCCEEE
Confidence 99999999999988767889999999999999999999999998899999999998754443 57789999887789999
Q ss_pred ECCCCC
Q 013883 428 IPTSVF 433 (434)
Q Consensus 428 ~pG~~F 433 (434)
.||..|
T Consensus 339 ~pg~~f 344 (378)
T PRK07682 339 VPGSVF 344 (378)
T ss_pred cCchhh
Confidence 999877
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=404.72 Aligned_cols=323 Identities=27% Similarity=0.476 Sum_probs=288.2
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCC-CCcEEEcCChHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDP-EKEVTVTSGCTEAIAA 185 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~~i~~t~G~~~ai~~ 185 (434)
+++.|+|+.|.|++++++.+.+++.+.+.+. .+.|+ ..|.++||+++++++.+.+|..+++ + +|++|+|+++++..
T Consensus 31 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~-~I~it~G~~~al~~ 108 (399)
T PRK07681 31 GHKMIDLSIGNPDMPPADFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADK-EVLLLMGSQDGLVH 108 (399)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCC-eEEECCCcHHHHHH
Confidence 4578999999999999999999988877642 34565 3799999999999999999999998 6 89999999999999
Q ss_pred HHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC-CCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHH
Q 013883 186 TILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL 264 (434)
Q Consensus 186 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l 264 (434)
++.+++++||+|++++|+|+.|...++..|++++.+|++++ ++.+|++.+++++.+++++|++++||||||.+++.+++
T Consensus 109 ~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~~~~ 188 (399)
T PRK07681 109 LPMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHEDFF 188 (399)
T ss_pred HHHHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCcCcCCCHHHH
Confidence 99999999999999999999999999999999999999754 57899999999998889999999999999999999999
Q ss_pred HHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcc
Q 013883 265 NVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL 343 (434)
Q Consensus 265 ~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~ 343 (434)
++|+++|++||++||+||+|.++.+++. ..++..+....+++|+++||||.||++|+|+||+++++++++.+...+...
T Consensus 189 ~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~~l~~~~~~~~~~~ 268 (399)
T PRK07681 189 KEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNEEIVRALTQFKSNT 268 (399)
T ss_pred HHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEecCHHHHHHHHHHHhhc
Confidence 9999999999999999999999988653 334455554557899999999999999999999999999999998887767
Q ss_pred ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhc
Q 013883 344 TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEV 423 (434)
Q Consensus 344 ~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~ 423 (434)
.++.+.+.|.++..+|++..+++++.++.++++++.+.+.|++.|+++..+++++|+|+++++ +. ++.+++.+|++++
T Consensus 269 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~g~f~~~~l~~-~~-~~~~~~~~l~~~~ 346 (399)
T PRK07681 269 DYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTFGWNVDKPAGSMFVWAEIPK-GW-TSLSFAYALMDRA 346 (399)
T ss_pred ccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeeEEEEECCC-CC-CHHHHHHHHHHhC
Confidence 788999999999999998778899999999999999999999999988888999999999853 22 5778999999878
Q ss_pred CeEEECCCCCC
Q 013883 424 GVVAIPTSVFY 434 (434)
Q Consensus 424 GV~v~pG~~F~ 434 (434)
||.+.||+.|.
T Consensus 347 gv~v~pg~~f~ 357 (399)
T PRK07681 347 NVVVTPGHAFG 357 (399)
T ss_pred CEEEeCChhhC
Confidence 99999998773
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=403.40 Aligned_cols=344 Identities=49% Similarity=0.845 Sum_probs=301.5
Q ss_pred hhhccccHHHHHHHHhhcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCC
Q 013883 91 LEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPE 170 (434)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~ 170 (434)
+...+...+.++..+....+++||+.|.|+.+.++.+.+++.+.+......|++..|.++||+++++++.+.+|.+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~ 85 (387)
T PRK07777 6 LRPFGTTIFAEMSALAVRTGAVNLGQGFPDEDGPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPD 85 (387)
T ss_pred hhhcCccHHHHHHHHHhhCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 34445555666666666678999999999988888788888887776667899999999999999999998899888776
Q ss_pred CcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC--CCCCCHHHHHhhcccCCcEEEe
Q 013883 171 KEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP--DFAIPIEELKSTISKNTRAILM 248 (434)
Q Consensus 171 ~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~--~~~~d~~~l~~~i~~~~~~i~~ 248 (434)
++|++|+|+++++.+++.+++++||+|+++.|+|..+...+...|.+++.++++++ ++.+|++.+++++++++++|++
T Consensus 86 ~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l 165 (387)
T PRK07777 86 TEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIV 165 (387)
T ss_pred CcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEE
Confidence 46999999999999999999999999999999999999999999999999999763 4779999999999889999999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEE
Q 013883 249 NTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI 327 (434)
Q Consensus 249 ~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~ 327 (434)
++||||||.+++.+++++|+++|++|++++|+||+|.++.|++. +.++..+.+..+++++++||||.||++|+|+||++
T Consensus 166 ~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~ 245 (387)
T PRK07777 166 NSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWAC 245 (387)
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEe
Confidence 99999999999999999999999999999999999999988653 33455554446789999999999999999999999
Q ss_pred eChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCC
Q 013883 328 APPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPF 407 (434)
Q Consensus 328 ~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 407 (434)
+++++++.+........++.+.+.|.++..+|...++|++++++.++++++.+.+.|++.|+++.+++|+||+|+++.+.
T Consensus 246 ~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~ 325 (387)
T PRK07777 246 GPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEAGFEVHDSAGTYFLCADPRPL 325 (387)
T ss_pred cCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCcceEEEeccccc
Confidence 99999999988877667788889999999999877788999999999999999999999999999999999999987543
Q ss_pred CCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 408 GHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 408 ~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+..++.+++++|++++||.|.||+.|+
T Consensus 326 ~~~~~~~~~~~l~~~~gv~v~pg~~f~ 352 (387)
T PRK07777 326 GYDDGTEFCRALPERVGVAAIPMSVFY 352 (387)
T ss_pred CCCCHHHHHHHHHHhCCEEEeCchHhC
Confidence 333678999999888899999999874
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=405.07 Aligned_cols=323 Identities=19% Similarity=0.312 Sum_probs=286.6
Q ss_pred CeeEeCCCCCC-CCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCC-CCcEEEcCChHHHHHHH
Q 013883 110 GAINLGQGFPN-FDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDP-EKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 110 ~~i~l~~g~p~-~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~~i~~t~G~~~ai~~~ 186 (434)
+.|+|+.|.|+ +++++.+.+++.+++... ...|++..|.++||+++++++.+.+|.++++ + +|++|+|+++++..+
T Consensus 40 ~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~-~I~it~Ga~~al~~~ 118 (405)
T PRK06207 40 RPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAAD-ELIITPGTQGALFLA 118 (405)
T ss_pred CceecCCcCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-CEEEeCCcHHHHHHH
Confidence 67999999988 456778888888877653 4679999999999999999999999988888 6 899999999999999
Q ss_pred HHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC----CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHH
Q 013883 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP----PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTRE 262 (434)
Q Consensus 187 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~----~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e 262 (434)
+.+++++||+|++++|+|+.+...++..|++++.++++. .++++|++.+++++++++++|++++||||||.+++.+
T Consensus 119 ~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~e 198 (405)
T PRK06207 119 VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAE 198 (405)
T ss_pred HHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCCCHH
Confidence 999999999999999999999999999999999999862 3588999999999988999999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhh
Q 013883 263 ELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHS 341 (434)
Q Consensus 263 ~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~ 341 (434)
++++|+++|++||++||+||+|.++.|++. ..++..+....+++++++||||.|+++|+|+||+++++++++.++..+.
T Consensus 199 ~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~~~l~~~~~~~~~ 278 (405)
T PRK06207 199 EIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKLQA 278 (405)
T ss_pred HHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcCHHHHHHHHHHHh
Confidence 999999999999999999999999998764 3344444445689999999999999999999999999999999998887
Q ss_pred ccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHH
Q 013883 342 FLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLI 420 (434)
Q Consensus 342 ~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll 420 (434)
....+.+.+.|.++..+|++...++++.++.++++++.+.+.|++. |+.+.++++++|+|+++++.+. ++.+++++|+
T Consensus 279 ~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~~~~~-~~~~~~~~l~ 357 (405)
T PRK06207 279 IVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLPRLAV-SLHDFVKILR 357 (405)
T ss_pred HhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCcccCC-CHHHHHHHHH
Confidence 7777888899999999998766678888888999999999999887 8888889999999999864333 4678999998
Q ss_pred HhcCeEEECCCCCC
Q 013883 421 KEVGVVAIPTSVFY 434 (434)
Q Consensus 421 ~~~GV~v~pG~~F~ 434 (434)
+++||.+.||+.|+
T Consensus 358 ~~~gV~v~pG~~F~ 371 (405)
T PRK06207 358 LQAGVIVTPGTEFS 371 (405)
T ss_pred HhcCEEEeCchHhC
Confidence 77899999999874
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=400.25 Aligned_cols=325 Identities=28% Similarity=0.498 Sum_probs=289.4
Q ss_pred hcCCeeEeCCCCCCCCCcHHHHHHHHHHHHc-CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 107 IKHGAINLGQGFPNFDGPDFVKDAAIQAIRD-GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 107 ~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
.++++++|+.|.|++++++.+.+++.+++.. ....|++..|.++||+++++++.+.+|..++++++|++|+|+++++..
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~ 106 (383)
T TIGR03540 27 EGVDVISLGIGDPDLPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAH 106 (383)
T ss_pred cCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHH
Confidence 3458899999999998889999998887754 346899999999999999999998889888876469999999999999
Q ss_pred HHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC-CCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHH
Q 013883 186 TILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL 264 (434)
Q Consensus 186 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l 264 (434)
+++.++++||+|++++|+|+.+...++..|++++.+|++++ ++.+|++.+++++.+++++|++++||||||.+++.+++
T Consensus 107 ~~~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~~~~ 186 (383)
T TIGR03540 107 IPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFF 186 (383)
T ss_pred HHHHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCCcCccCCHHHH
Confidence 99999999999999999999999999999999999999754 57789999999998899999999999999999999999
Q ss_pred HHHHHHHHHcCcEEEEcCcCCccccCC-CCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcc
Q 013883 265 NVIASLCIENDVLVFSDEVYDKLAFEM-DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL 343 (434)
Q Consensus 265 ~~i~~la~~~~~~iI~Deay~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~ 343 (434)
++|+++|++||++||+||+|.++.+++ ...++..+....+++++++||||.||++|+|+||+++++++++.+...+...
T Consensus 187 ~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~~l~~~~~~~~~~~ 266 (383)
T TIGR03540 187 KELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVKTNV 266 (383)
T ss_pred HHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCCHHHHHHHHHHHHhc
Confidence 999999999999999999999998865 3345555544456789999999999999999999999999999888877666
Q ss_pred ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhc
Q 013883 344 TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEV 423 (434)
Q Consensus 344 ~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~ 423 (434)
..+.+.+.|.++..+|++.++|++++++.++++++.+.+.|++.|+.+.++++++|+|+++++ +. ++.+++++|++++
T Consensus 267 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~ll~~~ 344 (383)
T TIGR03540 267 DSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKIGIDVEKPKATFYVWVPVPE-GY-TSAEFAARLLEET 344 (383)
T ss_pred ccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCCcceEEEEECCC-CC-CHHHHHHHHHHHC
Confidence 677888999999999998788999999999999999999999999999999999999999853 32 5778999988888
Q ss_pred CeEEECCCCC
Q 013883 424 GVVAIPTSVF 433 (434)
Q Consensus 424 GV~v~pG~~F 433 (434)
||.+.||+.|
T Consensus 345 gi~v~~g~~f 354 (383)
T TIGR03540 345 GVVVTPGVGF 354 (383)
T ss_pred CEEEecchhh
Confidence 9999999877
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=401.28 Aligned_cols=322 Identities=26% Similarity=0.496 Sum_probs=287.5
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+++.++|+.|.|++++++.+.+++.+.+......|.+..|.++||+++++++.+.+|..++++ +|++|+|+++++..++
T Consensus 31 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~it~G~~~al~~~~ 109 (387)
T PRK08960 31 GHDVIHLEIGEPDFTTAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPE-RILVTPGGSGALLLAS 109 (387)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChh-hEEEccCcHHHHHHHH
Confidence 457899999999998899999999988876556799999999999999999999999999998 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC-CCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
.+++++||+|++++|+|+.+...+...|.+++.++++.+ ++.+|++.++++++++++++++++||||||.+++.+++++
T Consensus 110 ~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~ 189 (387)
T PRK08960 110 SLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSRDELAA 189 (387)
T ss_pred HHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCCcCcCHHHHHH
Confidence 999999999999999999999999999999999999754 5789999999999988999999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccC
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA 346 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~ 346 (434)
|+++|++||++||+||+|.++.+++...++.. ..+++++++||||.+|++|+|+||++++++++++++........+
T Consensus 190 l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~---~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~ 266 (387)
T PRK08960 190 LSQALRARGGHLVVDEIYHGLTYGVDAASVLE---VDDDAFVLNSFSKYFGMTGWRLGWLVAPPAAVPELEKLAQNLYIS 266 (387)
T ss_pred HHHHHHHcCCEEEEEccccccccCCCCCChhh---ccCCEEEEeecccccCCcccEEEEEEcCHHHHHHHHHHHhhhccC
Confidence 99999999999999999999988654434333 346899999999999999999999999999999998887767778
Q ss_pred CchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEe-ecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcC
Q 013883 347 TSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKV-FPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVG 424 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~G 424 (434)
.+.+.|.++..+|.+ ..+++++++..++++++.+.+.|++.|+.+ ..++|++|+|++++..+. ++.+++++|++++|
T Consensus 267 ~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~f~~~~~~~~~~-~~~~~~~~ll~~~g 345 (387)
T PRK08960 267 ASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRELGFGIAVEPQGAFYLYADISAFGG-DAFAFCRHFLETEH 345 (387)
T ss_pred CCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCeeEEEEEeccccCC-CHHHHHHHHHHhCC
Confidence 899999999999975 357899999999999999999999988775 468899999999854322 46789988888889
Q ss_pred eEEECCCCCC
Q 013883 425 VVAIPTSVFY 434 (434)
Q Consensus 425 V~v~pG~~F~ 434 (434)
|.+.||+.|.
T Consensus 346 i~v~pg~~f~ 355 (387)
T PRK08960 346 VAFTPGLDFG 355 (387)
T ss_pred EEEcCchHhC
Confidence 9999998873
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-50 Score=399.05 Aligned_cols=338 Identities=32% Similarity=0.550 Sum_probs=296.6
Q ss_pred ccHHHHHHHHh-hcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEE
Q 013883 96 TTIFTQMSMLA-IKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVT 174 (434)
Q Consensus 96 ~~~~~~~~~~~-~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~ 174 (434)
...+.+..... ..++.|+|+.|.|++++++.+.+++.+.+.+....|++..|.++||+++++++.+.+|..++++.+|+
T Consensus 14 ~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~ 93 (387)
T PRK07683 14 ISGIRQFSNMVQNYDNLISLTIGQPDFPTPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEII 93 (387)
T ss_pred ccHHHHHHHHHHhcCCeEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEE
Confidence 33334433333 34578999999999888889999999988776678999999999999999999988898888864799
Q ss_pred EcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCC
Q 013883 175 VTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNP 254 (434)
Q Consensus 175 ~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NP 254 (434)
+|+|+++++.+++..++++||+|++++|+|.+|...++..|++++.++.+++++.+|.+.+++.++++++++++++||||
T Consensus 94 ~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p~NP 173 (387)
T PRK07683 94 VTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPSNP 173 (387)
T ss_pred EeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999988767888999999999889999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHH
Q 013883 255 TGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTW 334 (434)
Q Consensus 255 TG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~ 334 (434)
||.+++.+++++|+++|+++|++||+||+|.++.+++...++..+.+.++++++++||||.+|++|+|+||+++++++++
T Consensus 174 tG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~~l~~ 253 (387)
T PRK07683 174 TGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSYLAK 253 (387)
T ss_pred CCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcCHHHHH
Confidence 99999999999999999999999999999999988765555666555567899999999999999999999999999999
Q ss_pred HHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHH
Q 013883 335 GVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIA 414 (434)
Q Consensus 335 ~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (434)
++.........+++.+.|.++..+|.+.+.++++++..++++++.+.+.|++.|+.+.+++|++|+|+.+.+.+. ++.+
T Consensus 254 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 332 (387)
T PRK07683 254 HILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISMGLDVEKPTGAFYLFPSIGHFTM-SSFD 332 (387)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCeeEEEEEecccCCC-CHHH
Confidence 988776555566788899999999988777888899999999999999999999998899999999998754333 4678
Q ss_pred HHHHHHHhcCeEEECCCCCC
Q 013883 415 FCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 415 ~~~~Ll~~~GV~v~pG~~F~ 434 (434)
++.++++++||.+.||+.|.
T Consensus 333 ~~~~ll~~~gI~v~pg~~f~ 352 (387)
T PRK07683 333 FALDLVEEAGLAVVPGSAFS 352 (387)
T ss_pred HHHHHHHhCCEEEcCchhhC
Confidence 88888888899999998873
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-50 Score=398.51 Aligned_cols=324 Identities=31% Similarity=0.549 Sum_probs=288.3
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
+++.++|+.|.|++++++.+.+++.+++... ...|++..|.++||+++++++++.+|.+++++++|++|+|+++++..+
T Consensus 30 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~ 109 (385)
T PRK09276 30 GVDVISLGIGDPDLPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHI 109 (385)
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHH
Confidence 4578999999999999999999998887653 467999999999999999999988898888874599999999999999
Q ss_pred HHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC-CCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHH
Q 013883 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 187 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
+..++++||+|++++|+|+.|...++..|++++.++++++ ++.+|++.+++.+.+++++|++++||||||.+++.++++
T Consensus 110 ~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~ 189 (385)
T PRK09276 110 PLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLEFFE 189 (385)
T ss_pred HHHhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCCCCCCCHHHHH
Confidence 9999999999999999999999999999999999999753 577899999998888999999999999999999999999
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCC-CCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccc
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEM-DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT 344 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~ 344 (434)
+|+++|++||++||+||+|.++.+++ ...++..+....+++++++||||.||++|+|+||+++++++++.+...+....
T Consensus 190 ~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~l~~~~~~~~~~~~ 269 (385)
T PRK09276 190 EVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNADLIAGLGKVKSNVD 269 (385)
T ss_pred HHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCCHHHHHHHHHHHhhcc
Confidence 99999999999999999999998864 23455555444567899999999999999999999999999999988776666
Q ss_pred cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcC
Q 013883 345 FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVG 424 (434)
Q Consensus 345 ~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~G 424 (434)
.+.+.+.|.++..+|.+.+.|+++++++++++++.+.+.|++.|+.+.++++++|+|+++++ +. ++.+++++|++++|
T Consensus 270 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~~~~-~~-~~~~l~~~ll~~~g 347 (385)
T PRK09276 270 SGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKLGLEVEPPKATFYVWAPVPK-GY-TSAEFATLLLDKAG 347 (385)
T ss_pred CCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEECCC-CC-CHHHHHHHHHHhCC
Confidence 67788899999999987778899999999999999999999999998889999999999853 22 57789999988789
Q ss_pred eEEECCCCC
Q 013883 425 VVAIPTSVF 433 (434)
Q Consensus 425 V~v~pG~~F 433 (434)
|.+.||+.|
T Consensus 348 i~v~~g~~f 356 (385)
T PRK09276 348 VVVTPGNGF 356 (385)
T ss_pred EEECCchhh
Confidence 999999876
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-50 Score=400.21 Aligned_cols=326 Identities=23% Similarity=0.449 Sum_probs=282.3
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHc-CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRD-GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
+++.++|+.|.|+.+.++.+.+++.+.+.. ....|++..|.++||+++++++.+.+|+.++++++|++|+|+++++..+
T Consensus 32 ~~~~~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~ 111 (403)
T PRK08636 32 GEDIIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHL 111 (403)
T ss_pred CCCEEEcCCcCCCCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHH
Confidence 457899999999987777777777666554 3578999999999999999999998999888864699999999999999
Q ss_pred HHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHH----Hhhcc---cCCcEEEecCCCCCcccC
Q 013883 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEEL----KSTIS---KNTRAILMNTPHNPTGKM 258 (434)
Q Consensus 187 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l----~~~i~---~~~~~i~~~~p~NPTG~~ 258 (434)
+.+++++||+|++++|+|+.+...++..|++++.|+++. +++++|++.+ +++++ .+++++++++||||||.+
T Consensus 112 ~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~ 191 (403)
T PRK08636 112 VQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTAT 191 (403)
T ss_pred HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCcc
Confidence 999999999999999999999999999999999999863 4588998754 55553 468899999999999999
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHH
Q 013883 259 FTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVR 337 (434)
Q Consensus 259 ~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~ 337 (434)
+|.+++++|+++|++||++||+||+|.++.+++. ..++..++...+++++++||||.||++|+|+||+++++++++.+.
T Consensus 192 ~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~~li~~~~ 271 (403)
T PRK08636 192 VEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNKKLVGALK 271 (403)
T ss_pred CCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeeeeeCCHHHHHHHH
Confidence 9999999999999999999999999999988753 345555554446788899999999999999999999999999998
Q ss_pred HHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCC-CCCHHHHH
Q 013883 338 QAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFG-HETDIAFC 416 (434)
Q Consensus 338 ~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 416 (434)
+......++.+.+.|.++..+++..+++++++++.++++++.+.+.|++.|+.+.++++|+|+|+++++.. ..++.+++
T Consensus 272 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~g~~~~~~l~~~~~~~~~~~l~ 351 (403)
T PRK08636 272 KIKSWLDYGMFTPIQVAATIALDGDQSCVEEIRETYRKRRDVLIESFANAGWELQKPRASMFVWAKIPEPARHLGSLEFS 351 (403)
T ss_pred HHHHHhcccCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCcceEEEEECCCccCCCCHHHHH
Confidence 87766667888889999888887667889999999999999999999999998889999999999986421 12467898
Q ss_pred HHHHHhcCeEEECCCCC
Q 013883 417 EYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 417 ~~Ll~~~GV~v~pG~~F 433 (434)
.++++++||.+.||..|
T Consensus 352 ~~ll~~~gV~v~pg~~f 368 (403)
T PRK08636 352 KQLLTEAKVAVSPGIGF 368 (403)
T ss_pred HHHHHhCCEEEecchhh
Confidence 88888889999999887
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-50 Score=398.53 Aligned_cols=324 Identities=28% Similarity=0.534 Sum_probs=285.8
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
+++.++|+.|.|+.++++.+.+++.+.+... ...|++..|.++||+++++++++.+|.+++++++|++|+|+++++..+
T Consensus 34 g~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~ 113 (394)
T PRK05942 34 GLDLIDLGMGNPDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHL 113 (394)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHH
Confidence 4578999999998877777777776666543 468999999999999999999988898888874589999999999999
Q ss_pred HHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHH
Q 013883 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 187 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
+.+++++||+|++++|+|+.+...+...|++++.++++. .++.+|++.+++.+.+++++|++++||||||.+++.++++
T Consensus 114 ~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~s~~~~~ 193 (394)
T PRK05942 114 ALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFE 193 (394)
T ss_pred HHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhccccceEEEEcCCCCCCCCcCCHHHHH
Confidence 999999999999999999999999999999999999975 3578999999999988999999999999999999999999
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccc
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT 344 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~ 344 (434)
+|+++|++||++||+||+|.++.+++. ..++..+....+.+++++||||.||++|+|+||+++++++++.++..+....
T Consensus 194 ~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l~~~~~~~~ 273 (394)
T PRK05942 194 EIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGLRTLKTNLD 273 (394)
T ss_pred HHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecCHHHHHHHHHHHhhcc
Confidence 999999999999999999999988653 3344445443567899999999999999999999999999999988877667
Q ss_pred cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcC
Q 013883 345 FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVG 424 (434)
Q Consensus 345 ~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~G 424 (434)
++.+.+.|.++..+|+..++++++++++++++++.+.+.|++.|+.+.++++++|+|++++. +. ++.+++.++++++|
T Consensus 274 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~f~~~~~~~-~~-~~~~~~~~~l~~~g 351 (394)
T PRK05942 274 YGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGELGWNIPPTKATMYLWVPCPV-GM-GSTDFALNVLQKTG 351 (394)
T ss_pred cCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeeEEEEECCC-CC-CHHHHHHHHHHHCC
Confidence 88889999999999987778899999999999999999999999998899999999999853 22 46788888888889
Q ss_pred eEEECCCCC
Q 013883 425 VVAIPTSVF 433 (434)
Q Consensus 425 V~v~pG~~F 433 (434)
|.+.||+.|
T Consensus 352 V~v~~g~~f 360 (394)
T PRK05942 352 VVVTPGNAF 360 (394)
T ss_pred EEEeCChhh
Confidence 999999877
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-50 Score=400.36 Aligned_cols=320 Identities=24% Similarity=0.377 Sum_probs=281.3
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCC-CCCCCcEEEcCChHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLE-VDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~-~~~~~~i~~t~G~~~ai~~~ 186 (434)
+.+.|+|+.|.|++++++.+.+++.+.+. ....|++..|.++||+++++++.+.+|.. ++++++|++|+|+++++..+
T Consensus 28 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~ 106 (396)
T PRK09147 28 DLPPISLSIGEPKHPTPAFIKDALAANLD-GLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAF 106 (396)
T ss_pred CCCeEecCCCCCCCCCCHHHHHHHHHHhh-hhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHH
Confidence 45899999999999989999999887765 45789999999999999999999988988 88854799999999999999
Q ss_pred HHHccCC---CCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHH
Q 013883 187 ILGLINP---GDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTRE 262 (434)
Q Consensus 187 ~~~l~~~---gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e 262 (434)
+++++++ ||.|++++|+|..|..+++..|++++.+|+++ +++++|++.+++.+.++++++++++||||||.+++.+
T Consensus 107 ~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~~~s~~ 186 (396)
T PRK09147 107 AQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLD 186 (396)
T ss_pred HHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEEEEEcCCCCCcCccCCHH
Confidence 9999999 89999999999999999999999999999975 3578999999988877899999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEcCcCCccccCCCCcccc------CCC-CCCCceEEEccCChhhccccceeeeEEeChhhHHH
Q 013883 263 ELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIA------SLP-GMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG 335 (434)
Q Consensus 263 ~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~------~~~-~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~ 335 (434)
++++|+++|++||++||+||+|.++.|++...... .+. ...+++++++||||.++++|+|+||++++++++++
T Consensus 187 ~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~~~ 266 (396)
T PRK09147 187 DWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALLKK 266 (396)
T ss_pred HHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCHHHHHH
Confidence 99999999999999999999999998876322211 111 13579999999999999999999999999999999
Q ss_pred HHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHH
Q 013883 336 VRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAF 415 (434)
Q Consensus 336 l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (434)
+.+.+.....+.+.+.|.++...+.+ ++++++.++.++++++.+.+.|++. +.+..+++++|+|++++ .++.++
T Consensus 267 ~~~~~~~~~~~~~~~~q~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~p~~g~f~~~~~~----~~~~~~ 340 (396)
T PRK09147 267 FLLYRTYHGCAMPPAVQAASIAAWND-EAHVRENRALYREKFDAVTPILAPV-LDVQLPDAGFYLWAKVP----GDDTEF 340 (396)
T ss_pred HHHHhhhcccCCCHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCeeEEEEEECC----CCHHHH
Confidence 88777666678888999998888864 5688999999999999999999885 66678899999999985 147789
Q ss_pred HHHHHHhcCeEEECCCCCC
Q 013883 416 CEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 416 ~~~Ll~~~GV~v~pG~~F~ 434 (434)
+.+|++++||.+.||+.|+
T Consensus 341 ~~~ll~~~gv~v~pg~~f~ 359 (396)
T PRK09147 341 ARRLYADYNVTVLPGSYLA 359 (396)
T ss_pred HHHHHHhCCEEEeCCcccc
Confidence 9999888899999999873
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=398.74 Aligned_cols=326 Identities=26% Similarity=0.493 Sum_probs=282.5
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHc-CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRD-GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
+++.|+|+.|.|++++++.+.+++.+.+.. ....|++..|.++||+++++++++.+|..++++++|++|+|+++++..+
T Consensus 29 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~ 108 (405)
T PRK09148 29 GADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANM 108 (405)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHH
Confidence 457899999999988888888888877654 3478999999999999999999988898888864799999999999999
Q ss_pred HHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCC-CCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHH
Q 013883 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD-FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 187 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~-~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
+..++++||+|++++|+|+.|...+...|++++.++++.++ +-.+++...+...++++++++++||||||.+++.++++
T Consensus 109 ~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~ 188 (405)
T PRK09148 109 AQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYK 188 (405)
T ss_pred HHHhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHH
Confidence 99999999999999999999999999999999999987533 43445554444456889999999999999999999999
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCCC-ccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccc
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMDH-ISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT 344 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~~-~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~ 344 (434)
+|+++|++||++||+||+|.++.|++.. .++..++...+++++++||||.+|++|+|+||+++++++++.+...+....
T Consensus 189 ~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~~~~i~~l~~~~~~~~ 268 (405)
T PRK09148 189 DVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNERLIAALTRVKSYLD 268 (405)
T ss_pred HHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999886532 334444444567889999999999999999999999999999998887777
Q ss_pred cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCC-CCCCHHHHHHHHHHhc
Q 013883 345 FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPF-GHETDIAFCEYLIKEV 423 (434)
Q Consensus 345 ~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ll~~~ 423 (434)
++.+.+.|.++..+|++.++++++++..++++++.+.+.|++.|+.+..+++|+|+|+++++. ...++.+++.+|++++
T Consensus 269 ~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~f~~~~l~~~~~~~~~~~~~~~ll~~~ 348 (405)
T PRK09148 269 YGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRAGWDIPPPAASMFAWAPIPEAFRHLGSLEFSKLLVEKA 348 (405)
T ss_pred cCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCeeEEEEEECCCccCCCCHHHHHHHHHHhC
Confidence 888999999999999877788999999999999999999999998888899999999998542 1113578989888878
Q ss_pred CeEEECCCCC
Q 013883 424 GVVAIPTSVF 433 (434)
Q Consensus 424 GV~v~pG~~F 433 (434)
||.+.||+.|
T Consensus 349 gV~v~pg~~f 358 (405)
T PRK09148 349 DVAVAPGVGF 358 (405)
T ss_pred CEEEeCchhh
Confidence 9999999877
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=394.09 Aligned_cols=344 Identities=31% Similarity=0.565 Sum_probs=293.3
Q ss_pred HHhhhccccHHHHHHH-HhhcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCC
Q 013883 89 KRLEKFKTTIFTQMSM-LAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEV 167 (434)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~~~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~ 167 (434)
+++.........++.. ....++.|+|+.|.|++.+++.+.+++.+++......|.+..|.++||+++++++++.+|+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~ 88 (391)
T PRK07309 9 KQLDKIEVSLIRQFDQSISDIPGILKLTLGEPDFTTPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDY 88 (391)
T ss_pred hhhhhcCccHHHHHHHHHHhcCCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCC
Confidence 3344444444455544 233368999999999998888899999888776556799999999999999999999899888
Q ss_pred CCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc---CCc
Q 013883 168 DPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK---NTR 244 (434)
Q Consensus 168 ~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~---~~~ 244 (434)
+++++|++|+|+++++.+++.+++++||+|++++|+|.++..+++..|++++.++.++.++.+|++.+++++++ +++
T Consensus 89 ~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 168 (391)
T PRK07309 89 APENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLK 168 (391)
T ss_pred CCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCCCeE
Confidence 76448999999999999999999999999999999999999999999999999998765678999999998864 588
Q ss_pred EEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhcccccee
Q 013883 245 AILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKI 323 (434)
Q Consensus 245 ~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~ 323 (434)
+|++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+ ..+++++++||||.||++|+|+
T Consensus 169 ~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~g~~GlRv 246 (391)
T PRK07309 169 AVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY--LPDQTILINGLSKSHAMTGWRI 246 (391)
T ss_pred EEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh--ccCCEEEEecChhhccCcccee
Confidence 999999999999999999999999999999999999999999998543 3343333 2478999999999999999999
Q ss_pred eeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeee
Q 013883 324 GWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVD 403 (434)
Q Consensus 324 G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 403 (434)
||+++++++++.+.........+++.+.|.++..+|++...+...++..++++++.+.+.|++.|+.+.+++|++|+|++
T Consensus 247 G~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~~~~~~ 326 (391)
T PRK07309 247 GLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDLGFKIIKPDGAFYIFAK 326 (391)
T ss_pred EEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEE
Confidence 99999999999998776655667889999999999988655567788899999999999999999999999999999998
Q ss_pred cCCCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 404 HTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 404 ~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+++....++.++++++++++||.+.||+.|+
T Consensus 327 l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~ 357 (391)
T PRK07309 327 IPAGYNQDSFKFLQDFARKKAVAFIPGAAFG 357 (391)
T ss_pred CCCCCCCCHHHHHHHHHHhCCEEEeCchhhC
Confidence 7542122467888888888899999999874
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=394.96 Aligned_cols=323 Identities=27% Similarity=0.427 Sum_probs=286.7
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCC-CCCCCcEEEcCChHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLE-VDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~-~~~~~~i~~t~G~~~ai~~~ 186 (434)
.++|+|+.|.|++.+++.+.+++.+++... ...|++ .|.++||+++++++.+.+|+. ++++++|++|+|+++++..+
T Consensus 44 ~~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~~~~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~ 122 (410)
T PRK06290 44 MELIDMGVGEPDEMADESVVEVLCEEAKKPENRGYAD-NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAML 122 (410)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHH
Confidence 368999999999999999998888776543 456875 799999999999999888988 88864699999999999999
Q ss_pred HHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC-CCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHH
Q 013883 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 187 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
+.+++++||+|++++|+|+.|...++..|++++.+|++++ ++.+|++.+++++.+++++|++++||||||.+++.++++
T Consensus 123 ~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~v~s~e~l~ 202 (410)
T PRK06290 123 PSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFYE 202 (410)
T ss_pred HHHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCCcCCCHHHHH
Confidence 9999999999999999999999999999999999999864 577899999999988899999999999999999999999
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcccc
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTF 345 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~ 345 (434)
+|+++|++||++||+||+|.++.+++...++..+....+++|+++||||.+|++|+|+||+++++++++.+...+.....
T Consensus 203 ~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~~~l~~~l~~~~~~~~~ 282 (410)
T PRK06290 203 EVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNELIVKAFATVKDNNDS 282 (410)
T ss_pred HHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeEEeCHHHHHHHHHHHhcccc
Confidence 99999999999999999999998876544555555445778999999999999999999999999999999888877777
Q ss_pred CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCC-----CCCHHHHHHHHH
Q 013883 346 ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFG-----HETDIAFCEYLI 420 (434)
Q Consensus 346 ~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Ll 420 (434)
+.+.+.|.++..+|++. +++++.++.++++++.+.+.|++.|+.+.+++|+||+|+++++.. ..++.+++++|+
T Consensus 283 ~~~~~~q~aa~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll 361 (410)
T PRK06290 283 GQFIAIQKAGIYALDHP-EITEKIREKYSRRLDKLVKILNEVGFKAEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLI 361 (410)
T ss_pred CCcHHHHHHHHHHhhCc-HHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHH
Confidence 77889999999999874 688889999999999999999999999999999999999885421 135789999999
Q ss_pred HhcCeEEECCCCC
Q 013883 421 KEVGVVAIPTSVF 433 (434)
Q Consensus 421 ~~~GV~v~pG~~F 433 (434)
++.+|.+.||+.|
T Consensus 362 ~~~~v~~~p~~~~ 374 (410)
T PRK06290 362 KEKLISTVPWDDA 374 (410)
T ss_pred HhCCEEEECCccc
Confidence 9888899999866
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-49 Score=393.35 Aligned_cols=322 Identities=29% Similarity=0.543 Sum_probs=288.6
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
+++|+|+.|+|++++++.+.+++.+.+.+....|.+..|.++||+++++++.+.+|..++++ +|++|+|+++++..++.
T Consensus 24 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~-~i~~t~g~~~al~~~~~ 102 (382)
T PRK06108 24 EGVLPLWFGESDLPTPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPE-RIAVTSSGVQALMLAAQ 102 (382)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcc-eEEEeCChHHHHHHHHH
Confidence 47899999999999999999999998887666799999999999999999998889888888 89999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC--CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP--PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~--~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
.++++||+|++++|+|..+...++.+|++++.+|+++ .++.+|++.+++.++++++++++++||||||.+++.+++++
T Consensus 103 ~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~~ 182 (382)
T PRK06108 103 ALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRA 182 (382)
T ss_pred HhcCCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHHHHHH
Confidence 9999999999999999999999999999999999974 34679999999999888999999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccC-C-CCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccc
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFE-M-DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT 344 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~-~-~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~ 344 (434)
|+++|+++|+++|+||+|.++.++ + ....+..+....+++++++||||.||++|+|+||+++++++++.+........
T Consensus 183 l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~~~~~~~ 262 (382)
T PRK06108 183 ILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLIEYNT 262 (382)
T ss_pred HHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999886 2 22333444444578999999999999999999999999999999888776667
Q ss_pred cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhc
Q 013883 345 FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEV 423 (434)
Q Consensus 345 ~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~ 423 (434)
.+++.+.|.++..+|.+.++++++++++++++++.+.+.|++. |+.+.++++++|+|+++.+. .++.+++++|++++
T Consensus 263 ~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~~~~~l~~~--~~~~~~~~~ll~~~ 340 (382)
T PRK06108 263 SCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFFRIPGV--TDSLALAKRLVDEA 340 (382)
T ss_pred cCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCCC--CCHHHHHHHHHHhC
Confidence 7889999999999999877888999999999999999999887 89988999999999987532 25778999998888
Q ss_pred CeEEECCCCC
Q 013883 424 GVVAIPTSVF 433 (434)
Q Consensus 424 GV~v~pG~~F 433 (434)
||.+.||+.|
T Consensus 341 gV~v~pg~~f 350 (382)
T PRK06108 341 GLGLAPGTAF 350 (382)
T ss_pred CEEEeCchhh
Confidence 9999999876
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-49 Score=391.58 Aligned_cols=323 Identities=28% Similarity=0.522 Sum_probs=285.9
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+++.++|+.|.|++++++.+.+++.+.+......|++..|.++||+++++++++.+|..++++ +|++|+|+++++..++
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~-~i~~t~G~~~al~~~~ 107 (388)
T PRK07337 29 GRDIIHMGIGEPDFTAPEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPE-RIVVTAGASAALLLAC 107 (388)
T ss_pred CCCEEEeCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChH-hEEEecCcHHHHHHHH
Confidence 457899999999998888899999888876667899999999999999999999899989998 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
..++++||+|++++|+|+.+...+...|++++.+++++ .++++|++.+++.+++++++|++++||||||.+++.+++++
T Consensus 108 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~ 187 (388)
T PRK07337 108 LALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRR 187 (388)
T ss_pred HHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCCCCCCcCcCHHHHHH
Confidence 99999999999999999999999999999999999975 46899999999999989999999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccC
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA 346 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~ 346 (434)
|+++|+++++++|+||+|.++.+++...+... ..+++++++||||.+|++|+|+||+++++++++.+.........+
T Consensus 188 i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~---~~~~vi~~~S~SK~~~~~G~RiG~~~~~~~l~~~l~~~~~~~~~~ 264 (388)
T PRK07337 188 IVEAVRARGGFTIVDEIYQGLSYDAAPVSALS---LGDDVITINSFSKYFNMTGWRLGWLVVPEALVGTFEKLAQNLFIC 264 (388)
T ss_pred HHHHHHHCCCEEEEeccccccccCCCCcChhh---ccCCEEEEEechhhcCCchhheeeeecCHHHHHHHHHHHHHhccC
Confidence 99999999999999999999888654333332 346899999999999999999999999999999998887766778
Q ss_pred CchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCEe-ecCCeeEEEeeecCCC---CCCCHHHHHHHHHH
Q 013883 347 TSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFKV-FPSSGTYFVVVDHTPF---GHETDIAFCEYLIK 421 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~Ll~ 421 (434)
.+.+.|.++..++.+. .+++++.+..++++++.+.+.|++.|+.+ ..+++|+|+|+++++. +..++.+++.+|++
T Consensus 265 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~ 344 (388)
T PRK07337 265 ASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLH 344 (388)
T ss_pred CChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCeeEEEEEecccccCCCCCCHHHHHHHHHH
Confidence 8999999999999753 35678889999999999999999988765 4678999999998642 12257789989888
Q ss_pred hcCeEEECCCCCC
Q 013883 422 EVGVVAIPTSVFY 434 (434)
Q Consensus 422 ~~GV~v~pG~~F~ 434 (434)
++||.+.||+.|+
T Consensus 345 ~~gv~v~pg~~f~ 357 (388)
T PRK07337 345 DAGVVLVPGRDFG 357 (388)
T ss_pred hCCEEEeCchhhC
Confidence 8899999999874
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-49 Score=392.60 Aligned_cols=320 Identities=26% Similarity=0.410 Sum_probs=279.5
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCC--CCCCCcEEEcCChHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLE--VDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~--~~~~~~i~~t~G~~~ai~~ 185 (434)
+.+.++|+.|.|++++++.+.+++.+.+. ....|++..|.++||+++++++.+.+|.+ ++++++|++|+|+++++..
T Consensus 27 ~~~~i~l~~~~p~~~~~~~~~~a~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~ 105 (393)
T TIGR03538 27 SKPPIALSIGEPKHPTPAFVLEALRENLH-GLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFA 105 (393)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHhh-ccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHH
Confidence 45789999999999999999999988765 45789999999999999999999888876 6775479999999999999
Q ss_pred HHHHccCCCCe--EEEcCCCchhHHHHHHHcCCEEEEEEcCCC-CCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHH
Q 013883 186 TILGLINPGDE--VILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTRE 262 (434)
Q Consensus 186 ~~~~l~~~gd~--Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e 262 (434)
++.++++|||+ |++++|+|..|...+...|++++.++++++ ++.+|++.+++++.+++++|++++||||||.+++.+
T Consensus 106 ~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPtG~~~s~~ 185 (393)
T TIGR03538 106 FAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLSLD 185 (393)
T ss_pred HHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCCCCCcCcccCHH
Confidence 99999999986 999999999999999999999999999753 578999999998888899999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEcCcCCccccCCC--Ccccc-C---CC-CCCCceEEEccCChhhccccceeeeEEeChhhHHH
Q 013883 263 ELNVIASLCIENDVLVFSDEVYDKLAFEMD--HISIA-S---LP-GMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG 335 (434)
Q Consensus 263 ~l~~i~~la~~~~~~iI~Deay~~~~~~~~--~~~~~-~---~~-~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~ 335 (434)
++++|+++|++||++||+||+|.++.+++. ..+.. . .. ...+++++++||||.++++|+|+||+++++++++.
T Consensus 186 ~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l~~~ 265 (393)
T TIGR03538 186 TLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEILKA 265 (393)
T ss_pred HHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecCHHHHHH
Confidence 999999999999999999999999987642 22211 1 11 13578999999999999999999999999999999
Q ss_pred HHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHH
Q 013883 336 VRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAF 415 (434)
Q Consensus 336 l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (434)
+...+.....+.+.+.|.++...|.+ ++++++.++.++++++.+.+.|++. +.+..+++++|+|++++ .++.++
T Consensus 266 ~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~p~gg~f~~~~~~----~~~~~~ 339 (393)
T TIGR03538 266 FLRYRTYHGCAMPIPTQLASIAAWND-EQHVRENRALYREKFAAVLEILGQV-LDLELPDAGFYLWPKVP----GDDEAF 339 (393)
T ss_pred HHHHHHhhccCcCHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHhh-CcccCCCeeEEEEEECC----CCHHHH
Confidence 88877666677889999998888865 5688999999999999999999875 55668899999999985 246789
Q ss_pred HHHHHHhcCeEEECCCCCC
Q 013883 416 CEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 416 ~~~Ll~~~GV~v~pG~~F~ 434 (434)
+++|++++||.+.||+.|+
T Consensus 340 ~~~l~~~~gV~v~pg~~f~ 358 (393)
T TIGR03538 340 ARALYEEENVTVLPGRFLA 358 (393)
T ss_pred HHHHHHHCCEEEeCCcccc
Confidence 9998888899999999873
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-49 Score=393.16 Aligned_cols=325 Identities=25% Similarity=0.424 Sum_probs=276.9
Q ss_pred hhcCCeeEeCCCCCC----CCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH
Q 013883 106 AIKHGAINLGQGFPN----FDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180 (434)
Q Consensus 106 ~~~~~~i~l~~g~p~----~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~ 180 (434)
+.++++|+|++|.|+ +++++.+.+++.+++.+. ...|.+..|.++||+++++++.+.+|..++++ +|++|+|++
T Consensus 29 ~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-~I~it~G~~ 107 (409)
T PLN00143 29 DDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPD-DVYLTLGCK 107 (409)
T ss_pred CCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHh-hEEEecChH
Confidence 456689999999998 899999999999888764 46799999999999999999999999889998 899999999
Q ss_pred HHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCC
Q 013883 181 EAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMF 259 (434)
Q Consensus 181 ~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~ 259 (434)
+++.+++.+++++||.|++++|+|+.|...+...|++++.+++++ +++.+|++.++++++++++++++++||||||.++
T Consensus 108 ~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~ 187 (409)
T PLN00143 108 HAAEIIIKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVY 187 (409)
T ss_pred HHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCCCCcc
Confidence 999999999999999999999999999999999999999999863 4678999999999988899999999999999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCC-ccccCCCCCCCceEEEccCChhhccccceeeeEEeC-h-hhH---
Q 013883 260 TREELNVIASLCIENDVLVFSDEVYDKLAFEMDH-ISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-P-HLT--- 333 (434)
Q Consensus 260 ~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~-~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~-~~~--- 333 (434)
+.+++++|+++|++||++||+||+|.++.+++.. .++..+. ..+++++++||||.|+++|+|+||++++ + .++
T Consensus 188 s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~-~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~ 266 (409)
T PLN00143 188 SYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFA-SIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQIC 266 (409)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhc-ccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhH
Confidence 9999999999999999999999999999987542 3333343 3468999999999999999999999993 3 332
Q ss_pred ---HHHHHHhhccccCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEe--ecCCeeEEEeeecCCC
Q 013883 334 ---WGVRQAHSFLTFATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKV--FPSSGTYFVVVDHTPF 407 (434)
Q Consensus 334 ---~~l~~~~~~~~~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~~~~~~~~~~~~~~ 407 (434)
..+...... ....+.+.|.++..+|++ ..+++++.++.++++++.+.+.|++++... ..++|++|+|++++..
T Consensus 267 ~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~ 345 (409)
T PLN00143 267 EIADSIKKALNP-APFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLL 345 (409)
T ss_pred HHHHHHHHHHhc-cCCCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecchh
Confidence 333333322 223578899999999986 367899999999999999999998875332 3688999999998532
Q ss_pred ---CCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 408 ---GHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 408 ---~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+..++.+++.++++++||.++||+.|
T Consensus 346 ~~~~~~~~~~~~~~ll~~~gV~v~pg~~f 374 (409)
T PLN00143 346 LLEDIEDDMEFCLKLAKEESLIILPGVTV 374 (409)
T ss_pred hcCCCCCHHHHHHHHHHhCCEEEeCcccc
Confidence 22346788888888889999999987
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=387.69 Aligned_cols=342 Identities=26% Similarity=0.530 Sum_probs=292.8
Q ss_pred HHhhhccccHHHHHHHH-hhcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCC
Q 013883 89 KRLEKFKTTIFTQMSML-AIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLE 166 (434)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-~~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~ 166 (434)
+++...+...+..+... +..++.++|+.|.|++++++.+.+++.+.+... ...|.+..|.+++|+++++++.+.+|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~ 85 (389)
T PRK05957 6 SRMDAVQSPIIPVVGQLIRENPGTISLGQGVVSYPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIE 85 (389)
T ss_pred HHHHhcCCcHHHHHHHHHHhCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 33434444444333322 223578999999999999999999998877643 3579999999999999999999888988
Q ss_pred CC-CCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcE
Q 013883 167 VD-PEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRA 245 (434)
Q Consensus 167 ~~-~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~ 245 (434)
++ ++ +|++|+|+++++..++..++++||+|++++|+|..+...++..|++++.++.+ +++++|++.+++++++++++
T Consensus 86 ~~~~~-~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~~~~kl 163 (389)
T PRK05957 86 LNNEQ-AIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD-DNYQLQPEAIEQAITPKTRA 163 (389)
T ss_pred CCCCC-eEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC-CCCCcCHHHHHHhcCcCceE
Confidence 77 55 89999999999999999999999999999999999999999999999999986 36889999999999989999
Q ss_pred EEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceee
Q 013883 246 ILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIG 324 (434)
Q Consensus 246 i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G 324 (434)
|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ..+...+.+..+++++++||||.+|++|+|+|
T Consensus 164 v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG 243 (389)
T PRK05957 164 IVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIG 243 (389)
T ss_pred EEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeE
Confidence 99999999999999999999999999999999999999999988652 22344444456789999999999999999999
Q ss_pred eEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-C-CEeecCCeeEEEee
Q 013883 325 WAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-G-FKVFPSSGTYFVVV 402 (434)
Q Consensus 325 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g-~~~~~~~~~~~~~~ 402 (434)
|+++++++++++.........+.+.+.|.++..+|++..+++++.++.++++++.+.+.|+++ + +.+.+++|++|+|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~ 323 (389)
T PRK05957 244 YMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFL 323 (389)
T ss_pred EEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEE
Confidence 999999999999988876677888899999999998877788888899999999999999987 5 37778999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 403 DHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 403 ~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
++.. +. ++.+++++|++++||.+.||+.|+
T Consensus 324 ~~~~-~~-~~~~~~~~l~~~~gv~v~pg~~f~ 353 (389)
T PRK05957 324 KVNT-DL-NDFELVKQLIREYRVAVIPGTTFG 353 (389)
T ss_pred eCCC-CC-ChHHHHHHHHHHCCEEEccchhhC
Confidence 9743 33 578999999887899999999873
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=395.71 Aligned_cols=324 Identities=23% Similarity=0.453 Sum_probs=277.3
Q ss_pred cCCeeEeCCCCCC----CCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 108 KHGAINLGQGFPN----FDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 108 ~~~~i~l~~g~p~----~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
..++|+|++|.|+ +.+++.+.+++.++++.+ ...|.+..|.++||+++|+++++.++..++++ +|++|+|++++
T Consensus 65 ~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~-~I~it~G~~~a 143 (462)
T PLN02187 65 NKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPE-DIFLTAGCNQG 143 (462)
T ss_pred CCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcc-cEEEeCCHHHH
Confidence 4579999999998 556788899998888764 36799999999999999999998889899998 89999999999
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCH
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTR 261 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~ 261 (434)
+..++.++++|||+|++++|+|+.|...+...|++++.+++.+ +++++|++.++++++++++++++++||||||.+++.
T Consensus 144 l~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~ 223 (462)
T PLN02187 144 IEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSH 223 (462)
T ss_pred HHHHHHHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCH
Confidence 9999999999999999999999999999999999999999864 468999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeC-hh----hHHH
Q 013883 262 EELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PH----LTWG 335 (434)
Q Consensus 262 e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~----~~~~ 335 (434)
+++++|+++|++||++||+||+|.++.|++. ..++..+.. ..++++++||||.|+++|+|+||++++ ++ ++..
T Consensus 224 e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~-~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~ 302 (462)
T PLN02187 224 DHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFAS-IVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKV 302 (462)
T ss_pred HHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhcc-CCcEEEEecchhhcCCccceeEEEEecCchhHHHHHHH
Confidence 9999999999999999999999999998763 334444433 246999999999999999999999984 32 3345
Q ss_pred HHHHhhcccc--CCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCE--eecCCeeEEEeeecCC---C
Q 013883 336 VRQAHSFLTF--ATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFK--VFPSSGTYFVVVDHTP---F 407 (434)
Q Consensus 336 l~~~~~~~~~--~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~--~~~~~~~~~~~~~~~~---~ 407 (434)
+...+..... +++.+.|.++..+|++ .++|++++++.++++++.+.+.|++.+.. +..|+|++|+|+++.. .
T Consensus 303 ~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~~ 382 (462)
T PLN02187 303 LQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLMD 382 (462)
T ss_pred HHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChhhCC
Confidence 6555554444 4578999999999985 46899999999999999999999987543 2368899999997642 1
Q ss_pred CCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 408 GHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 408 ~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+..++.+++.++++++||.+.||+.|
T Consensus 383 ~~~~~~~~~~~ll~~~gV~v~pG~~f 408 (462)
T PLN02187 383 NIKDDIDFCVKLAREENLVFLPGDAL 408 (462)
T ss_pred CCCCHHHHHHHHHhhCCEEEECcccc
Confidence 22246688888888889999999987
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=389.91 Aligned_cols=326 Identities=29% Similarity=0.554 Sum_probs=290.2
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
++++++|+.|.|++++++.+.+++.+++.+...+|.+..|.++||+++++++.+.+|..++++ +|++|+|+++++..++
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~i~~t~G~~~al~~~~ 110 (402)
T PRK06107 32 GRSIVDLTVGEPDFDTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADN-EITVGGGAKQAIFLAL 110 (402)
T ss_pred cCCEEEcCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChh-hEEEeCCHHHHHHHHH
Confidence 457899999999999889999999998876667899999999999999999998889988888 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
.+++++||+|++++|+|..|...+...|.+++.++++. +++.+|++.++++++++++++++++||||||.+++.+++++
T Consensus 111 ~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~ 190 (402)
T PRK06107 111 MATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRA 190 (402)
T ss_pred HHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCCCcCcCHHHHHH
Confidence 99999999999999999999999999999998888864 45789999999999888999999999999999999999999
Q ss_pred HHHHHHHc-CcEEEEcCcCCccccCCC-CccccCC-CCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcc
Q 013883 267 IASLCIEN-DVLVFSDEVYDKLAFEMD-HISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL 343 (434)
Q Consensus 267 i~~la~~~-~~~iI~Deay~~~~~~~~-~~~~~~~-~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~ 343 (434)
|+++|++| ++++|+||+|.++.|++. ..++..+ .+..+++++++||||.||++|+|+||+++++++++.+...+...
T Consensus 191 l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~ 270 (402)
T PRK06107 191 LADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINKLQSQS 270 (402)
T ss_pred HHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCHHHHHHHHHHHHhc
Confidence 99999998 999999999999988653 3344444 23357899999999999999999999999999999999988877
Q ss_pred ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCC-------C--CCCHH
Q 013883 344 TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPF-------G--HETDI 413 (434)
Q Consensus 344 ~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-------~--~~~~~ 413 (434)
..+++.+.|.++..+|...+.++++.++.++++++.+.+.|++. |+.+.+++||||+|+++... + ..++.
T Consensus 271 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (402)
T PRK06107 271 SSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQ 350 (402)
T ss_pred ccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEeeecccccccccccccCCCCHH
Confidence 88999999999999998667789999999999999999999987 88888999999999987421 1 12567
Q ss_pred HHHHHHHHhcCeEEECCCCCC
Q 013883 414 AFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 414 ~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+++++|++++||.+.||+.|.
T Consensus 351 ~~~~~l~~~~gv~v~pg~~Fg 371 (402)
T PRK06107 351 DVVLYLLDSAGVAVVQGTAYG 371 (402)
T ss_pred HHHHHHHHhCCEEEeCccccC
Confidence 889889888899999999883
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-49 Score=396.55 Aligned_cols=322 Identities=23% Similarity=0.391 Sum_probs=272.3
Q ss_pred CCeeEeCCCCC---CCCCcHHHHHHHHHHHHc-CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 109 HGAINLGQGFP---NFDGPDFVKDAAIQAIRD-GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 109 ~~~i~l~~g~p---~~~~~~~v~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
.++++|++|.| ++++|+.+.+++.+++.+ ....|.+..|.++||+++++++.+.+|..++++ +|++|+|+++++.
T Consensus 32 ~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~-~I~it~G~~~al~ 110 (433)
T PRK06855 32 VKITWENIGDPIAKGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPD-DIIFFNGLGDAIA 110 (433)
T ss_pred ccccccccCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHh-HEEEcCcHHHHHH
Confidence 46799999999 678999999998887754 346899999999999999999999899999998 8999999999999
Q ss_pred HHHHHccCCCCeEEEcCCCchhHHHH-HHHcCCEEEEEEcCC-CCCCCCHHHHHhhcc--cCCcEEEecCCCCCcccCCC
Q 013883 185 ATILGLINPGDEVILFAPFYDSYEAT-LSMAGAKIKCITLRP-PDFAIPIEELKSTIS--KNTRAILMNTPHNPTGKMFT 260 (434)
Q Consensus 185 ~~~~~l~~~gd~Vlv~~p~y~~~~~~-~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~--~~~~~i~~~~p~NPTG~~~~ 260 (434)
+++. ++++||.|++++|+|+.|... ....|++++.+++++ +++++|++.++++++ ++++++++++||||||.+++
T Consensus 111 ~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s 189 (433)
T PRK06855 111 KIYG-LLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYP 189 (433)
T ss_pred HHHH-hcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCC
Confidence 9885 889999999999999998755 345699999999875 468899999999986 35789999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeC-----h---h
Q 013883 261 REELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-----P---H 331 (434)
Q Consensus 261 ~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-----~---~ 331 (434)
.+++++|+++|++||++||+||+|.++.|++. ..++..+.. .+++|+++||||.++++|+|+||++++ + +
T Consensus 190 ~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~-~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~ 268 (433)
T PRK06855 190 KEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIG-DVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKK 268 (433)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcC-cCCeEEEecCccccCCCcceEEEEEEeCCchhhHHHH
Confidence 99999999999999999999999999998763 345555432 236799999999999999999999983 2 2
Q ss_pred hHHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCC
Q 013883 332 LTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFG 408 (434)
Q Consensus 332 ~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~ 408 (434)
+++.+...+. ...+++.+.|.++..+|++. ++++++++..|+++++.+.+.|++. |+.+.+++|+||+|+++++..
T Consensus 269 ~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~~~~ 347 (433)
T PRK06855 269 YINSILNAKM-IEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGV 347 (433)
T ss_pred HHHHHHHhhc-cccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccCCCeeEEEeecccccc
Confidence 2333333322 24567889999999999875 6789999999999999999999886 888889999999999986421
Q ss_pred -------------------------CCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 409 -------------------------HETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 409 -------------------------~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
..++.+++.+|++++||.+.||+.|+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~ 398 (433)
T PRK06855 348 LNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFC 398 (433)
T ss_pred ccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCC
Confidence 11467888888888999999999984
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-49 Score=401.50 Aligned_cols=324 Identities=24% Similarity=0.429 Sum_probs=270.9
Q ss_pred CCeeEeCCCCCC----------------CCC-------------cHHHHHHHHHHHHc---CCCCCCCCCCcHHHHHHHH
Q 013883 109 HGAINLGQGFPN----------------FDG-------------PDFVKDAAIQAIRD---GKNQYARGHGVPEFNSAIA 156 (434)
Q Consensus 109 ~~~i~l~~g~p~----------------~~~-------------~~~v~~~~~~~~~~---~~~~Y~~~~G~~~lr~~ia 156 (434)
.++|+|++|+|+ +.. |..+.+++.++++. ....|++..|+++||++++
T Consensus 46 ~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia 125 (481)
T PTZ00377 46 DSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLEDPSVSSLFPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVA 125 (481)
T ss_pred ceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhcCccccccCCHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHH
Confidence 489999999996 655 33666666666554 2466999999999999999
Q ss_pred HHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc-CCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHH
Q 013883 157 SRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI-NPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEE 234 (434)
Q Consensus 157 ~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~ 234 (434)
+++.+.+|..++++ +|++|+|+++++..++++++ ++||+|++++|+|+.|...++..|++++.+++++ ++|++|++.
T Consensus 126 ~~~~~~~g~~~~~~-~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~ 204 (481)
T PTZ00377 126 AFIERRDGVPKDPS-DIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEE 204 (481)
T ss_pred HHHHHhcCCCCChh-hEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHH
Confidence 99999999999998 89999999999999999998 7999999999999999999999999999999985 468999999
Q ss_pred HHhhccc------CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC--CccccC----CCCC
Q 013883 235 LKSTISK------NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD--HISIAS----LPGM 302 (434)
Q Consensus 235 l~~~i~~------~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~--~~~~~~----~~~~ 302 (434)
+++++++ ++|++++++||||||.+++.+++++|+++|++||++||+||+|.++.|+++ +.++.. +...
T Consensus 205 l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~ 284 (481)
T PTZ00377 205 LEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAE 284 (481)
T ss_pred HHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhccc
Confidence 9999875 789999999999999999999999999999999999999999999998542 233322 2211
Q ss_pred ---CCceEEEccCChh-hccccceeeeEEe---ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC-------hHHHH-
Q 013883 303 ---YERTVTMNSLGKT-FSLTGWKIGWAIA---PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP-------ETYYE- 367 (434)
Q Consensus 303 ---~~~~i~i~S~SK~-~g~~G~R~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~-------~~~~~- 367 (434)
..++++++||||. ++++|||+||+++ ++++++++.+.+. ...+++.+.|.++..+|+.. +.+.+
T Consensus 285 ~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~ 363 (481)
T PTZ00377 285 YNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLAS-INLCSNVVGQLMTGLMCNPPREGDASYPLYKRE 363 (481)
T ss_pred ccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhh-eecCCChHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 1368999999998 5999999999996 8999999988764 34578999999999999642 22433
Q ss_pred --HHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecC-CCC---------CCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 368 --ELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHT-PFG---------HETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 368 --~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+++..++++++.+.+.|+++ |+.+.+++|+||+|+++. +.+ ..++.+++.++++++||.+.||+.|+
T Consensus 364 ~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~ 443 (481)
T PTZ00377 364 RDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFG 443 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccC
Confidence 34456899999999999987 899999999999998753 111 12355677888888999999999884
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-49 Score=403.29 Aligned_cols=345 Identities=24% Similarity=0.401 Sum_probs=282.5
Q ss_pred hHHHHHhhhccccHHHHHHHH-----hhcCCeeEeCCCCC---CCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHH
Q 013883 85 QQVAKRLEKFKTTIFTQMSML-----AIKHGAINLGQGFP---NFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIA 156 (434)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~g~p---~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia 156 (434)
+..++++.....++...+... ..+.++|+|+.|+| ++++|+.+.+++.+++.. ...|++..|.++||++++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~-~~~Y~~~~G~~~lReaia 195 (517)
T PRK13355 117 FKKSHKLDNVLYDVRGPVVDEANRMEAAGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTD-TEGYSDSKGLFSARKAIM 195 (517)
T ss_pred CChhHHhhccCccHHHHHHHHHHHHHHcCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhc-CCCCCCCcChHHHHHHHH
Confidence 445666655555544433221 23468999999999 577788899888887764 467999999999999999
Q ss_pred HHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC-CCCCCHHHH
Q 013883 157 SRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEEL 235 (434)
Q Consensus 157 ~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l 235 (434)
+++.+.++..++++ +|++|+|+++++.+++.+++++||+|++++|+|+.|...+...|++++.++++++ +|.+|++.+
T Consensus 196 ~~~~~~~~~~~~~~-~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l 274 (517)
T PRK13355 196 QYAQLKGLPNVDVD-DIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDI 274 (517)
T ss_pred HHHHhcCCCCCChh-HEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHH
Confidence 99987776678888 8999999999999999999999999999999999999999999999999998764 589999999
Q ss_pred HhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC-CCccccCCCCCCCceEEEccCCh
Q 013883 236 KSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM-DHISIASLPGMYERTVTMNSLGK 314 (434)
Q Consensus 236 ~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK 314 (434)
++++++++++|++++||||||.+++.+++++|+++|++||++||+||+|.+|.|++ .+.++..+.. ...+++++||||
T Consensus 275 ~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~-~~~vi~~~S~SK 353 (517)
T PRK13355 275 RSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAP-DLFCVTFSGLSK 353 (517)
T ss_pred HHhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCC-CCeEEEEecchh
Confidence 99999999999999999999999999999999999999999999999999999876 3445544422 234678899999
Q ss_pred hhccccceeeeEEeC--hhh----HHHHHHHhhccccCCchHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHhh
Q 013883 315 TFSLTGWKIGWAIAP--PHL----TWGVRQAHSFLTFATSTPMQWAATAALRAP---ETYYEELKRDYSAKKAILVEGLN 385 (434)
Q Consensus 315 ~~g~~G~R~G~~~~~--~~~----~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~---~~~~~~~~~~~~~~~~~l~~~L~ 385 (434)
.|+++|||+||++++ +++ ++.+... ....++.+.++|.++..+|... .+++++. .++.++|+.+.+.|+
T Consensus 354 ~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~-~~~~~~r~~l~~~L~ 431 (517)
T PRK13355 354 SHMIAGYRIGWMILSGNKRIAKDYIEGLNML-ANMRLCSNVPAQSIVQTALGGHQSVKDYLVPG-GRVYEQRELVYNALN 431 (517)
T ss_pred hccCcccceEEEEeeCchhhHHHHHHHHHHH-hcCcCCcChHHHHHHHHHhcCCccHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 999999999999954 443 3344333 2344678899999999999753 3455554 345567899999999
Q ss_pred hC-CCEeecCCeeEEEeeecCCC--CCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 386 AV-GFKVFPSSGTYFVVVDHTPF--GHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 386 ~~-g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
++ |+.+.+++|+||+|+++... +..++.+++.++++++||.++||+.|.
T Consensus 432 ~~~g~~~~~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~ 483 (517)
T PRK13355 432 AIPGISAVKPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFN 483 (517)
T ss_pred cCCCcccCCCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhC
Confidence 88 89999999999999887532 233567888888888999999999883
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=393.46 Aligned_cols=324 Identities=27% Similarity=0.469 Sum_probs=279.1
Q ss_pred cCCeeEeCCCCCC----CCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 108 KHGAINLGQGFPN----FDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 108 ~~~~i~l~~g~p~----~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+.++|+|++|.|+ +++++.+.+++.++++.+ ...|++..|.++||+++++++.+.+|.+++++ +|++|+|++++
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~-~v~it~G~~~a 129 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTD-DIYLTAGCAQA 129 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChh-hEEEeCCHHHH
Confidence 4479999999985 777889999999988764 35799999999999999999999899999998 89999999999
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCH
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTR 261 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~ 261 (434)
+.+++..++++||+|++++|+|+.|...+...|++++.+++.+ +++.+|++.++++++++++++++++||||||.+++.
T Consensus 130 l~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~ 209 (430)
T PLN00145 130 IEIIMSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSY 209 (430)
T ss_pred HHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCH
Confidence 9999999999999999999999999999999999999999764 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEe--ChhhHH----
Q 013883 262 EELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA--PPHLTW---- 334 (434)
Q Consensus 262 e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~--~~~~~~---- 334 (434)
+++++|+++|+++|++||+||+|.+|.|++. ..++..+.. .+++++++||||.|+++|||+||+++ ++.++.
T Consensus 210 ~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~ 288 (430)
T PLN00145 210 EHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGE-VAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKV 288 (430)
T ss_pred HHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcc-cCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHH
Confidence 9999999999999999999999999998763 344444443 56899999999999999999999997 344433
Q ss_pred --HHHHHhhccccCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhC-CCEe-ecCCeeEEEeeecCCC--
Q 013883 335 --GVRQAHSFLTFATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAV-GFKV-FPSSGTYFVVVDHTPF-- 407 (434)
Q Consensus 335 --~l~~~~~~~~~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~~~~~-- 407 (434)
.++... ....+++.+.|.++..+|++ .+++++++++.++++++.+.+.|++. |+.+ ..|+|+||+|++++..
T Consensus 289 ~~~~~~~~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~~ 367 (430)
T PLN00145 289 VDSIRNYL-NISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSCL 367 (430)
T ss_pred HHHHHHHh-cccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhhc
Confidence 333332 23345678999999999987 46789999999999999999999986 7775 4799999999987531
Q ss_pred -CCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 408 -GHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 408 -~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+..++.+++.+|++++||.+.||+.|.
T Consensus 368 ~~~~~~~~~~~~ll~~~gV~v~pG~~fg 395 (430)
T PLN00145 368 SGIKDDMDFCCKLAKEESVVVLPGSALG 395 (430)
T ss_pred CCCCCHHHHHHHHHHhCCEEEeCccccC
Confidence 222577899999999999999999873
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=388.65 Aligned_cols=322 Identities=33% Similarity=0.576 Sum_probs=287.3
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
++.|+|+.|.|++++++.+.+++.+++.+....|.+..|.++||+++++++.+.+|..++++ +|++|+|+++++.+++.
T Consensus 33 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~ 111 (391)
T PRK08361 33 ENVISLGIGEPDFDTPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVD-NVIVTAGAYEATYLAFE 111 (391)
T ss_pred cCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcc-cEEEeCChHHHHHHHHH
Confidence 57899999999998889999999888877667798889999999999999998888889998 89999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC-CCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
+++++||+|++++|+|..+...+...|++++.++++++ ++.+|++.+++.++++++++++++||||||.+++.+++++|
T Consensus 112 ~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~~~~~l 191 (391)
T PRK08361 112 SLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAI 191 (391)
T ss_pred HhcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCCCCCcCcCHHHHHHH
Confidence 99999999999999999999999999999999999764 57899999999999899999999999999999999999999
Q ss_pred HHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccC
Q 013883 268 ASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA 346 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~ 346 (434)
+++|++++++||+||+|.++.+++. ..++..+ ..+++++++||||.+|++|+|+||+++++++++.+...+.....+
T Consensus 192 ~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~--~~~~~i~~~s~SK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~ 269 (391)
T PRK08361 192 ADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKY--APDNTILANSFSKTFAMTGWRLGFVIAPEQVIKDMIKLHAYIIGN 269 (391)
T ss_pred HHHHHHcCeEEEEEcccccceeCCCCCCCHhhc--CCCCEEEEecCchhcCCcHhhhhhhccCHHHHHHHHHHHhhhccC
Confidence 9999999999999999999987643 2333333 246899999999999999999999999999999888777666778
Q ss_pred CchHHHHHHHHHHhCCh--HHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhc
Q 013883 347 TSTPMQWAATAALRAPE--TYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEV 423 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~ 423 (434)
.+.+.|.++..+|++.. ++++++++.++++++.+.+.|+++ |+.+.+++|++|+|+++++.+. ++.+++++|++++
T Consensus 270 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~~l~~~~~-~~~~l~~~l~~~~ 348 (391)
T PRK08361 270 VASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDETGM-SSEDFAEWLLEKA 348 (391)
T ss_pred CChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEEEEEECCCCCC-CHHHHHHHHHHhC
Confidence 88999999999998753 578899999999999999999987 8888899999999999864343 5778999988878
Q ss_pred CeEEECCCCCC
Q 013883 424 GVVAIPTSVFY 434 (434)
Q Consensus 424 GV~v~pG~~F~ 434 (434)
||.+.||+.|+
T Consensus 349 gv~v~pg~~f~ 359 (391)
T PRK08361 349 RVVVIPGTAFG 359 (391)
T ss_pred CEEEcCchhhC
Confidence 99999998874
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=388.19 Aligned_cols=325 Identities=24% Similarity=0.451 Sum_probs=280.8
Q ss_pred hcCCeeEeCCCCCC----CCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 107 IKHGAINLGQGFPN----FDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 107 ~~~~~i~l~~g~p~----~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
.+.++|+|++|.|+ +++++.+.+++.+++.+. ...|.+..|.++||+++++++++.+|..++++ +|++|+|+++
T Consensus 29 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~ 107 (409)
T PLN02656 29 NGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLD-DVFITSGCTQ 107 (409)
T ss_pred cCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcc-cEEEeCChHH
Confidence 44589999999998 788999999999888764 46899999999999999999999889999998 8999999999
Q ss_pred HHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCC
Q 013883 182 AIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFT 260 (434)
Q Consensus 182 ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~ 260 (434)
++..++.+++++||+|++++|+|+.|...+...|++++.+++++ +++.+|++.++++++++++++++++||||||.+++
T Consensus 108 al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s 187 (409)
T PLN02656 108 AIDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYS 187 (409)
T ss_pred HHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999964 46789999999999889999999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeC--------hh
Q 013883 261 REELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP--------PH 331 (434)
Q Consensus 261 ~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~--------~~ 331 (434)
.+++++|+++|++||++||+||+|.+|.|++. ..++..+. ..+++++++||||.|+++|+|+||++++ ++
T Consensus 188 ~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~ 266 (409)
T PLN02656 188 YQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFG-SIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPK 266 (409)
T ss_pred HHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhc-ccCcEEEEcccchhccCcceeEEEEEEeCcccccccHH
Confidence 99999999999999999999999999998763 23433342 2468999999999999999999999984 57
Q ss_pred hHHHHHHHhhccccCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCC-CE-eecCCeeEEEeeecCCC-
Q 013883 332 LTWGVRQAHSFLTFATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVG-FK-VFPSSGTYFVVVDHTPF- 407 (434)
Q Consensus 332 ~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~-~~~~~~~~~~~~~~~~~- 407 (434)
+++.+.+.... ..+++.+.|.++..+|++ .++++++.+++++++++.+.+.|++++ +. +.+++|++|+|++++..
T Consensus 267 ~~~~~~~~~~~-~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~ 345 (409)
T PLN02656 267 IVERIKKYFDI-LGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSL 345 (409)
T ss_pred HHHHHHHHHhh-hcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhh
Confidence 88888776543 346788999999999985 367899999999999999999999874 33 35789999999997421
Q ss_pred --CCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 408 --GHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 408 --~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+..++.+++.++++++||.+.||+.|.
T Consensus 346 ~~~~~~~~~~~~~~l~~~gV~v~pg~~fg 374 (409)
T PLN02656 346 LEDISDDIDFCFKLAREESVIILPGTAVG 374 (409)
T ss_pred cCCCCCHHHHHHHHHHhCCEEEecchhcC
Confidence 122355777777788899999999873
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=397.59 Aligned_cols=342 Identities=21% Similarity=0.376 Sum_probs=283.3
Q ss_pred HHhhhccccHHHHHHHHhhcCCeeEeCCCCCCCCCcHHHHHHHHHHHHc--C--CCCCCCCCCcHHHHHHHHHHHHhhcC
Q 013883 89 KRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRD--G--KNQYARGHGVPEFNSAIASRFKKDSG 164 (434)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~--~--~~~Y~~~~G~~~lr~~ia~~l~~~~g 164 (434)
+.+.+.+...++++..+...++.|+|+.+.+.++. .+.+.+.+.+.+ + ...|++..|.++||+++++++.+++|
T Consensus 109 ~~~~~~~~~~~r~v~~~~~~p~~i~~~~~~~~fp~--~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g 186 (534)
T PLN02231 109 QSLGQQPITFFREVLALCDHPSLLDKSETHGLFSA--DAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDG 186 (534)
T ss_pred HHcCCCccHHHHHHHHhccCCccCCCCCccccCCH--HHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccC
Confidence 34556667777888888888899999988777766 444444455554 2 46799999999999999999999999
Q ss_pred CCCCCCCcEEEcCChHHHHHHHHHHccC-CCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC-CCCCCHHHHHhhccc-
Q 013883 165 LEVDPEKEVTVTSGCTEAIAATILGLIN-PGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISK- 241 (434)
Q Consensus 165 ~~~~~~~~i~~t~G~~~ai~~~~~~l~~-~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~- 241 (434)
.+++++ +|++|+|+++++.+++..++. +||.|+++.|+|+.|...+...|++++.++++++ +|++|++.|++++++
T Consensus 187 ~~~~pe-~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~ 265 (534)
T PLN02231 187 FPADPN-DIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDA 265 (534)
T ss_pred CCCCcc-cEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHH
Confidence 999999 899999999999999999984 8999999999999999999999999999999863 589999999998865
Q ss_pred -----CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC--CCccccCCCC------CCCceEE
Q 013883 242 -----NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM--DHISIASLPG------MYERTVT 308 (434)
Q Consensus 242 -----~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~--~~~~~~~~~~------~~~~~i~ 308 (434)
++|++++++||||||.+++.+++++|+++|++||++||+||+|.++.|++ .+.++..+.. ...++++
T Consensus 266 ~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~ 345 (534)
T PLN02231 266 RSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVS 345 (534)
T ss_pred hhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEE
Confidence 68999999999999999999999999999999999999999999999953 2334443321 1236899
Q ss_pred EccCChhh-ccccceeeeEEe---ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC-------hH---HHHHHHHHHH
Q 013883 309 MNSLGKTF-SLTGWKIGWAIA---PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP-------ET---YYEELKRDYS 374 (434)
Q Consensus 309 i~S~SK~~-g~~G~R~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~-------~~---~~~~~~~~~~ 374 (434)
++||||.+ |++|+|+||+++ ++++++++.+... ...+.+.+.|.++..+++.+ ++ +.+++++.|+
T Consensus 346 l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~-~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~ 424 (534)
T PLN02231 346 FQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVAS-VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLA 424 (534)
T ss_pred EeccCcccccCCccceEEEEEecCCHHHHHHHHHHHh-hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 99999976 899999999986 6889998887765 45677888999999999642 22 2335678999
Q ss_pred HHHHHHHHHhhhC-CCEeecCCeeEEEeeecC-CCC---------CCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 375 AKKAILVEGLNAV-GFKVFPSSGTYFVVVDHT-PFG---------HETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 375 ~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
++++.+.+.|+++ |+.+.+++|+||+|+++. +.. ..++..++.+|++++||.++||+.|+
T Consensus 425 ~r~~~l~~~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg 495 (534)
T PLN02231 425 RRAKTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFG 495 (534)
T ss_pred HHHHHHHHHHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccC
Confidence 9999999999987 899999999999996542 111 12345577889988999999999985
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-48 Score=387.90 Aligned_cols=326 Identities=24% Similarity=0.442 Sum_probs=280.2
Q ss_pred hhcCCeeEeCCCCCC----CCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhc------CCCCCCCCcEE
Q 013883 106 AIKHGAINLGQGFPN----FDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDS------GLEVDPEKEVT 174 (434)
Q Consensus 106 ~~~~~~i~l~~g~p~----~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~------g~~~~~~~~i~ 174 (434)
..+++.|+|+.|.|+ +.+++.+.+++.+.+... ...|++..|.++||+++++++++.+ |..++++ +|+
T Consensus 30 ~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~-~i~ 108 (412)
T PTZ00433 30 PSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKD-NVV 108 (412)
T ss_pred CCCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChh-hEE
Confidence 356689999999987 457888999888877653 4689999999999999999998754 4668888 899
Q ss_pred EcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCC
Q 013883 175 VTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHN 253 (434)
Q Consensus 175 ~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~N 253 (434)
+|+|+++++.+++.+++++||+|++++|+|..+...++..|++++.+++++ .++++|++.+++++++++++|++++|||
T Consensus 109 it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~N 188 (412)
T PTZ00433 109 LCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSN 188 (412)
T ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhccCceEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999999975 4689999999999988999999999999
Q ss_pred CcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEe--C-
Q 013883 254 PTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA--P- 329 (434)
Q Consensus 254 PTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~--~- 329 (434)
|||.+++.+++++|+++|++||++||+||+|.+|.+++. ..++..+.. ..++++++||||.||++|+|+||+++ +
T Consensus 189 PtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~ 267 (412)
T PTZ00433 189 PCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDT-TVPRVILGGTAKNLVVPGWRLGWLLLVDPH 267 (412)
T ss_pred CCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccC-CCceEEEccchhhcCCCCeeEEEEEEeCCc
Confidence 999999999999999999999999999999999988753 234445533 23589999999999999999999997 2
Q ss_pred ---hhhHHHHHHHhhccccCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeec
Q 013883 330 ---PHLTWGVRQAHSFLTFATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDH 404 (434)
Q Consensus 330 ---~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 404 (434)
+++++.++.... ..++.+.+.|.++..+|.+ .++++++.++.++++++.+.+.|++. |+.+.++++++|+|+++
T Consensus 268 ~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f~~~~l 346 (412)
T PTZ00433 268 GNGGDFLDGMKRLGM-LVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRL 346 (412)
T ss_pred ccHHHHHHHHHHHhh-ccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeEEEEEEe
Confidence 456666666543 3467899999999999986 46889999999999999999999885 78888999999999987
Q ss_pred CCC---CCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 405 TPF---GHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 405 ~~~---~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+.. +..++.+++++|++++||.+.||+.|+
T Consensus 347 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~ 379 (412)
T PTZ00433 347 DLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFH 379 (412)
T ss_pred chhhcCCCCCHHHHHHHHHHhcCEEEeCccccC
Confidence 431 122467899999887899999999883
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-48 Score=385.65 Aligned_cols=324 Identities=30% Similarity=0.528 Sum_probs=281.7
Q ss_pred cCCeeEeCCCCC---CCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFP---NFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p---~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+.++|+|+.|.| ++++++.+.+++.+++.+....|++..|.++||+++++++++.+|+.++++ +|++|+|+++++.
T Consensus 29 ~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~it~G~~~al~ 107 (398)
T PRK08363 29 GIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPD-DVRVTAAVTEALQ 107 (398)
T ss_pred CCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChh-hEEEeCCHHHHHH
Confidence 457899999999 678889999999888876656799899999999999999999999999998 8999999999999
Q ss_pred HHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEE-EcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHH
Q 013883 185 ATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCI-TLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREE 263 (434)
Q Consensus 185 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v-~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~ 263 (434)
+++.+++++||+|++++|+|..+...++..|++++.+ +.+++++.+|++.+++++++++++|++++||||||.+++.++
T Consensus 108 ~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~ 187 (398)
T PRK08363 108 LIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKT 187 (398)
T ss_pred HHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCHHH
Confidence 9999999999999999999999999999999999888 455556789999999999888999999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEe--ChhhHHHHHHHhh
Q 013883 264 LNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA--PPHLTWGVRQAHS 341 (434)
Q Consensus 264 l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~--~~~~~~~l~~~~~ 341 (434)
+++|+++|+++|+++|+||+|.++.+++...++..+.. .+++++++||||.|+++|+|+||+++ ++++++.+.....
T Consensus 188 ~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~-~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~ 266 (398)
T PRK08363 188 LKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTK-DVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAID 266 (398)
T ss_pred HHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCc-CCcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHH
Confidence 99999999999999999999999988765545555543 45799999999999999999999997 6777666554332
Q ss_pred c---cccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHH
Q 013883 342 F---LTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCE 417 (434)
Q Consensus 342 ~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (434)
. ..++.+.+.|.++..+|.+.++++++.+++++++++.+.+.|+++ |+.+.+++|+||+|+++++....++.+++.
T Consensus 267 ~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~~~~~~~~~~~~ 346 (398)
T PRK08363 267 KLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPRIEEGPWKDDKEFVL 346 (398)
T ss_pred HHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhcCCCCEecCCCeEEEEEEEeccCCCCCHHHHHH
Confidence 1 246789999999999998767899999999999999999999887 888888999999998875421224667877
Q ss_pred HHHHhcCeEEECCCCC
Q 013883 418 YLIKEVGVVAIPTSVF 433 (434)
Q Consensus 418 ~Ll~~~GV~v~pG~~F 433 (434)
++++++||.+.||+.|
T Consensus 347 ~~l~~~gV~v~~g~~f 362 (398)
T PRK08363 347 DVLHEAHVLFVHGSGF 362 (398)
T ss_pred HHHHhCCEEEeCchhh
Confidence 7778889999999987
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=384.62 Aligned_cols=316 Identities=27% Similarity=0.360 Sum_probs=281.8
Q ss_pred hcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 107 IKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 107 ~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
.+.++++|+.|+|+++.++.+ +++.+++.+....|++..|.++||+++++++.+ ++++ +|++|+|+++++.++
T Consensus 24 ~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~-----~~~~-~vi~t~G~~~al~~~ 96 (373)
T PRK07324 24 AESCIDSLTLEELLALAGKNP-EAFYQELGQKKLTYGWIEGSPEFKEAVASLYQN-----VKPE-NILQTNGATGANFLV 96 (373)
T ss_pred ccCCCCCCcHHHHHhccCcch-HHHHHHHhcCCccCCCCCCCHHHHHHHHHHhcC-----CChh-hEEEcCChHHHHHHH
Confidence 345899999999999988888 888888887777999999999999999999862 5677 899999999999999
Q ss_pred HHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHH
Q 013883 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 187 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
+.+++++||+|+++.|+|..+...++..|++++.+|+++ .++.+|++.+++++++++|+|++++||||||.+++.++++
T Consensus 97 ~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~ 176 (373)
T PRK07324 97 LYALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLE 176 (373)
T ss_pred HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHH
Confidence 999999999999999999999999999999999999976 3577899999999988999999999999999999999999
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcccc
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTF 345 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~ 345 (434)
+|+++|++||++||+||+|.++.+++...++.. ..+++|+++||||.+|++|+|+||+++++++++++++.+....+
T Consensus 177 ~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~---~~~~~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~~~~~~~~~ 253 (373)
T PRK07324 177 EIVEIARSVDAYVLSDEVYRPLDEDGSTPSIAD---LYEKGISTNSMSKTYSLPGIRVGWIAANEEVIDILRKYRDYTMI 253 (373)
T ss_pred HHHHHHHHCCCEEEEEccccccccCCCCCChhh---ccCCEEEEecchhhcCCccceeEEEecCHHHHHHHHHHhCcEEe
Confidence 999999999999999999999988654333333 35688999999999999999999999999999999998887778
Q ss_pred CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcC
Q 013883 346 ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVG 424 (434)
Q Consensus 346 ~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~G 424 (434)
+.+.+.|.++..+|++.+.+++++++.++++++.+.+.|++. ++.+..|+++++.|+.+.. +. ++.+|+++|++++|
T Consensus 254 ~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~~~~-~~-~~~~~~~~ll~~~g 331 (373)
T PRK07324 254 CAGVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDV-DM-PSEDFCLKLLKETG 331 (373)
T ss_pred cCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEEEEEeCC-CC-CHHHHHHHHHHhcC
Confidence 889999999999998777789999999999999999999886 7888889999888887743 22 57899999998889
Q ss_pred eEEECCCCCC
Q 013883 425 VVAIPTSVFY 434 (434)
Q Consensus 425 V~v~pG~~F~ 434 (434)
|.+.||+.|+
T Consensus 332 v~v~pg~~F~ 341 (373)
T PRK07324 332 VLLVPGNRFD 341 (373)
T ss_pred EEEECccccC
Confidence 9999999884
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=382.86 Aligned_cols=322 Identities=26% Similarity=0.445 Sum_probs=275.2
Q ss_pred CCeeEeCCCCCC----CCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 109 HGAINLGQGFPN----FDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 109 ~~~i~l~~g~p~----~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
.+.++|+.|.|+ +++++.+.+++.+++.+. ...|.+..|.++||+++++++++. +..++++ +|++|+|+++++
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~-~~~~~~~-~i~~t~G~~~al 108 (401)
T TIGR01264 31 KPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNP-DGPIEAD-DVVLCSGCSHAI 108 (401)
T ss_pred CCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhc-CCCCCHH-HEEECcChHHHH
Confidence 467999999985 778888999988887764 357999999999999999999864 5568888 899999999999
Q ss_pred HHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC-CCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHH
Q 013883 184 AATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTRE 262 (434)
Q Consensus 184 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e 262 (434)
.+++.+++++||+|++++|+|..|...++..|++++.++++.+ ++++|++.++++++++++++++++||||||.+++.+
T Consensus 109 ~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~ 188 (401)
T TIGR01264 109 EMCIAALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQ 188 (401)
T ss_pred HHHHHHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCceEEEEcCCCCCCCCCCCHH
Confidence 9999999999999999999999999999999999999998753 589999999999988899999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeCh------hhHHH
Q 013883 263 ELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP------HLTWG 335 (434)
Q Consensus 263 ~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~------~~~~~ 335 (434)
++++|+++|+++|++||+||+|.+|.+++. ..++..+.. ..++|+++||||.|+++|+|+||+++++ ++++.
T Consensus 189 ~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~ 267 (401)
T TIGR01264 189 HLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSS-TVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDG 267 (401)
T ss_pred HHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCC-CCcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHH
Confidence 999999999999999999999999988753 334444432 2358999999999999999999999874 34444
Q ss_pred HHHHhhccccCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCC---CCC
Q 013883 336 VRQAHSFLTFATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPF---GHE 410 (434)
Q Consensus 336 l~~~~~~~~~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~---~~~ 410 (434)
++.... ..++++.+.|.++..+|.+ .+++++++++.++++++.+.+.|+++ |+.+..+++|+|+|+++... +..
T Consensus 268 ~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~ 346 (401)
T TIGR01264 268 LVKLSQ-RILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMPSGAMYMMVGIEMEHFPEFK 346 (401)
T ss_pred HHHHhh-ccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeeEEEEEecccccCCCC
Confidence 444432 2467789999999999975 36789999999999999999999988 78877899999999997531 122
Q ss_pred CHHHHHHHHHHhcCeEEECCCCCC
Q 013883 411 TDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 411 ~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
++.+++++|++++||.+.||+.|.
T Consensus 347 ~~~~~~~~l~~~~gI~v~pg~~f~ 370 (401)
T TIGR01264 347 NDVEFTERLVAEQSVFCLPGSCFE 370 (401)
T ss_pred CHHHHHHHHHHhCCEEEeCchhcC
Confidence 467899998878899999999873
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=377.07 Aligned_cols=317 Identities=26% Similarity=0.436 Sum_probs=279.6
Q ss_pred eeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc
Q 013883 111 AINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL 190 (434)
Q Consensus 111 ~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l 190 (434)
.++|+.|.|++++++.+.+++.+... ....|++..|.++||+++++++.+.+|+.++++++|++|+|+++++..++..+
T Consensus 2 ~~~~~~g~p~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~ 80 (350)
T TIGR03537 2 LFDFGTGDPKEPTPPFIRKALIDAVP-EVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVF 80 (350)
T ss_pred eEeccCCCCCCCCCHHHHHHHHHHHh-ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHH
Confidence 57999999999989999999888765 35679999999999999999999999998888657999999999999999999
Q ss_pred cCCC---CeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 191 INPG---DEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 191 ~~~g---d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
+++| |+|+++.|+|..|...++..|++++.+++++ .++.+|++.++++++++++++++++||||||.+++.+++++
T Consensus 81 ~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~ 160 (350)
T TIGR03537 81 IDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKE 160 (350)
T ss_pred cCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHH
Confidence 9887 6999999999999999999999999999974 46789999999999889999999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccC
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA 346 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~ 346 (434)
|+++|++||++||+||+|..+.+++...++..+ ..++++++.||||.+|++|+|+||++++++++++++..+.....+
T Consensus 161 l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~i~~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~ 238 (350)
T TIGR03537 161 TIAMCREHGIILCSDECYTEIYFGEPPHSALEV--GIENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFGVA 238 (350)
T ss_pred HHHHHHHcCcEEEEeccccccccCCCCCchhhc--CcCCEEEEeecccccCCccccceeeecCHHHHHHHHHHHHhhccC
Confidence 999999999999999999998776543333333 357899999999999999999999999999999998887666667
Q ss_pred CchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 347 TSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
.+...|.++..+|.+ ++++++.+.+++++++.+.+.|++.|+++.++++++|+|++++. + .++.+++++|++ +||.
T Consensus 239 ~~~~~q~~~~~~l~~-~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~g~~~~~~~~~~-~-~~~~~l~~~L~~-~gv~ 314 (350)
T TIGR03537 239 SPDFVQAAAKAAWSD-DNHVLERRKIFKRKRDLFIEFFNKVGLEYLYPDATFYLWVKVPS-G-IDAKDYALRLLE-NGIV 314 (350)
T ss_pred CCHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeEEEEEEECCC-C-CCHHHHHHHHHH-CCEE
Confidence 777788888888875 56888889999999999999999999998899999999998853 2 257789999876 5999
Q ss_pred EECCCCCC
Q 013883 427 AIPTSVFY 434 (434)
Q Consensus 427 v~pG~~F~ 434 (434)
|.||..|.
T Consensus 315 v~~g~~f~ 322 (350)
T TIGR03537 315 VAPGENFG 322 (350)
T ss_pred EcCchhhC
Confidence 99999873
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=390.51 Aligned_cols=315 Identities=18% Similarity=0.215 Sum_probs=258.6
Q ss_pred CCeeEeCCCCC-CCCCcHHHHHHHHHHH----H-cCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEE--EcCChH
Q 013883 109 HGAINLGQGFP-NFDGPDFVKDAAIQAI----R-DGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVT--VTSGCT 180 (434)
Q Consensus 109 ~~~i~l~~g~p-~~~~~~~v~~~~~~~~----~-~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~--~t~G~~ 180 (434)
+++|||+.|.| +++++..+.+.+.+++ . ....+|.+..|+++||+++++++.+..+..++++ +|+ .|.|++
T Consensus 29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~-~v~~~~t~G~~ 107 (404)
T PTZ00376 29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEK-RIATVQALSGT 107 (404)
T ss_pred cccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccC-eEEEeeccCcc
Confidence 47899999986 5666666666666654 2 2347899999999999999999987776777888 788 589999
Q ss_pred HHHHHHHH---HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcc---cCCcEEEecCCCC
Q 013883 181 EAIAATIL---GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTIS---KNTRAILMNTPHN 253 (434)
Q Consensus 181 ~ai~~~~~---~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~---~~~~~i~~~~p~N 253 (434)
+++.+++. ++++|||+|++++|+|+.|...++..|++++.+|+.+ +++++|++.++++++ ++++++++++|||
T Consensus 108 ~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~N 187 (404)
T PTZ00376 108 GALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHN 187 (404)
T ss_pred hHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 99888764 6789999999999999999999999999999999954 468999999999885 3467778899999
Q ss_pred CcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC---CCccccCCCCCCCceEEEccCChhhccccceeeeE---E
Q 013883 254 PTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM---DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWA---I 327 (434)
Q Consensus 254 PTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~---~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~---~ 327 (434)
|||.+++.+++++|+++|++|+++||+||+|.+|.+++ ...++..+....+++++++||||.|+++|+|+||+ +
T Consensus 188 PTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~ 267 (404)
T PTZ00376 188 PTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVC 267 (404)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEe
Confidence 99999999999999999999999999999999998864 12233444444568999999999999999999998 5
Q ss_pred eChhhHHHH----HHHhhccccCCchHHHHHHHHHHhCCh---HH---HHHHHHHHHHHHHHHHHHhhhCC----CEeec
Q 013883 328 APPHLTWGV----RQAHSFLTFATSTPMQWAATAALRAPE---TY---YEELKRDYSAKKAILVEGLNAVG----FKVFP 393 (434)
Q Consensus 328 ~~~~~~~~l----~~~~~~~~~~~~~~~q~a~~~~L~~~~---~~---~~~~~~~~~~~~~~l~~~L~~~g----~~~~~ 393 (434)
+++++++.+ .+.......+.+.+.|.++..+|++.+ +| +++++++++++|+.+.+.|++.+ |.+.+
T Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~ 347 (404)
T PTZ00376 268 ANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHII 347 (404)
T ss_pred CCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc
Confidence 687755543 333333445567889999999998742 33 56677899999999999999874 56678
Q ss_pred CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 394 SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
++||||+|+++ +.+++++|++++||.+.||.
T Consensus 348 p~gg~f~~~~~-------~~~~~~~L~~~~~v~v~p~~ 378 (404)
T PTZ00376 348 NQIGMFSFTGL-------TKEQVERLIEKYHIYLLDNG 378 (404)
T ss_pred cCceEEEecCC-------CHHHHHHHHHhCCEeecCCC
Confidence 89999999986 35899999999999999983
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=384.51 Aligned_cols=317 Identities=24% Similarity=0.357 Sum_probs=268.5
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHc-----CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRD-----GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~-----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+++.++|+.|.|++++++.+.+++.+++.+ ....|.+..|.++||+++++++.+.+|..++++ +|++|+|++++
T Consensus 33 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~-~I~it~Ga~~a 111 (409)
T PRK07590 33 EAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISAD-EIFISDGAKCD 111 (409)
T ss_pred CCceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChh-hEEECCCHHHH
Confidence 347899999999999999999999888765 346799999999999999999988899999998 89999999999
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCE-----------EEEEEcCCC-CCCCCHHHHHhhcccCCcEEEecC
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYEATLSMAGAK-----------IKCITLRPP-DFAIPIEELKSTISKNTRAILMNT 250 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~-----------~~~v~~~~~-~~~~d~~~l~~~i~~~~~~i~~~~ 250 (434)
+.+++ .++++||+|++++|+|+.|...++..|.+ ++.++++++ ++.+|++ .+++++|++++
T Consensus 112 l~~l~-~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~------~~~~k~i~l~n 184 (409)
T PRK07590 112 TGNIL-DIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELP------EEKVDIIYLCF 184 (409)
T ss_pred HHHHH-HhcCCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCc------ccCceEEEEeC
Confidence 99864 56789999999999999999999999997 888998743 3545532 25789999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeC
Q 013883 251 PHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP 329 (434)
Q Consensus 251 p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~ 329 (434)
||||||.+++.+++++|+++|++||++||+||+|.+|.+++. ..++..++...+++|+++||||.+|++|+|+||++++
T Consensus 185 P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~ 264 (409)
T PRK07590 185 PNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVP 264 (409)
T ss_pred CCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcC
Confidence 999999999999999999999999999999999999988654 2345555444467999999999999999999999999
Q ss_pred hhhHHHH------------HHHhhccccCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCe
Q 013883 330 PHLTWGV------------RQAHSFLTFATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSG 396 (434)
Q Consensus 330 ~~~~~~l------------~~~~~~~~~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 396 (434)
+++++.+ .........+.+.+.|.++..+|.+ ..++++++++.++++++.+.+.|++.|+.+.++++
T Consensus 265 ~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~g 344 (409)
T PRK07590 265 KELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESAGFEVYGGVN 344 (409)
T ss_pred HHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCc
Confidence 9988621 1112212235788999999999975 45788999999999999999999999988888899
Q ss_pred eEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 397 TYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
++|+|+++++ +. ++.+++.+|++++||.+.||+.|+
T Consensus 345 ~~f~wi~~~~-~~-~~~~~~~~l~~~~gv~v~pg~~f~ 380 (409)
T PRK07590 345 APYIWVKTPD-GM-SSWDFFDKLLQEANVVGTPGSGFG 380 (409)
T ss_pred ceEEEEECCC-CC-CHHHHHHHHHHHCCEEEeChhHhC
Confidence 9999999854 22 467889889888899999998873
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-48 Score=391.57 Aligned_cols=317 Identities=23% Similarity=0.359 Sum_probs=259.0
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhh-cCCCCCC--CCcEEEcCChHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKD-SGLEVDP--EKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~-~g~~~~~--~~~i~~t~G~~~ai~~~ 186 (434)
++|||++|.|++++++.+.+.+ +++. + ..|+++.|.++||+++++++.+. .+....+ +++|++|+|+++++..+
T Consensus 101 ~~i~l~~g~p~~~~~~~v~e~~-~~~~-~-~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~ 177 (527)
T PRK09275 101 DAVSYVRDQLGFDADEFVYELV-DGII-G-DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYI 177 (527)
T ss_pred HHHhhcCCCCCCCCCHHHHHHH-HHHh-c-CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHH
Confidence 5799999999999999999855 4443 2 35999999999999999966543 3332222 23899999999999999
Q ss_pred HHH-----ccCCCCeEEEcCCCchhHHHHHHHcCC--EEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccC
Q 013883 187 ILG-----LINPGDEVILFAPFYDSYEATLSMAGA--KIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKM 258 (434)
Q Consensus 187 ~~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~G~--~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~ 258 (434)
+.+ +++|||+|++++|+|+.|..++...|. +++.++.++ .+|++|++.+++++++++|+|++++||||||.+
T Consensus 178 ~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v 257 (527)
T PRK09275 178 FDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVA 257 (527)
T ss_pred HHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCC
Confidence 886 689999999999999999999888754 555555554 458999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH--cCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh-----
Q 013883 259 FTREELNVIASLCIE--NDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH----- 331 (434)
Q Consensus 259 ~~~e~l~~i~~la~~--~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~----- 331 (434)
++.+++++|+++|++ +|++||+||+|..|.+ .+.++... .++++++++||||.||++|||+||++++++
T Consensus 258 ~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~s~~~~--~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~~v~~~ 333 (527)
T PRK09275 258 MSDESLEKIADIVNEKRPDLMIITDDVYGTFVD--DFRSLFAV--LPYNTILVYSFSKYFGATGWRLGVIALHEDNVFDK 333 (527)
T ss_pred CCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc--cccCHHHh--CCCCEEEEeehhhhccCcHhHHhhhhcCchhHHHH
Confidence 999999999999965 4999999999999874 33343333 357999999999999999999999999976
Q ss_pred hHHHH--------------------------------HHHhhccccCCchHHHHHH-----HHHHhCChHHHHHHHHHHH
Q 013883 332 LTWGV--------------------------------RQAHSFLTFATSTPMQWAA-----TAALRAPETYYEELKRDYS 374 (434)
Q Consensus 332 ~~~~l--------------------------------~~~~~~~~~~~~~~~q~a~-----~~~L~~~~~~~~~~~~~~~ 374 (434)
+++.+ +++....+.+.+.+.|.++ .++|+..+++.+++++.++
T Consensus 334 ~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~~~~~~~~~~~~~~ 413 (527)
T PRK09275 334 LIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDEEDAYKKAMKDIIR 413 (527)
T ss_pred HHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 33222 5666677889999999873 3456666788999999999
Q ss_pred HHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCC--------------CCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 375 AKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFG--------------HETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 375 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+|++.+.+.|. .++...+++|+||+|+++...+ ..++.+|+.+|++++||.+.||+.|+
T Consensus 414 ~Rr~~l~~~Lg-~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg 486 (527)
T PRK09275 414 RRYKALYEGLG-LPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVLLPGGGFG 486 (527)
T ss_pred HHHHHHHHHcC-CCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEEeCchhhC
Confidence 99999988883 3444467999999999985431 12578999999999999999999984
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-47 Score=376.26 Aligned_cols=324 Identities=25% Similarity=0.392 Sum_probs=283.8
Q ss_pred hcCCeeEeCCCCCCCCCcHHHHHHHHHHHHc-CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 107 IKHGAINLGQGFPNFDGPDFVKDAAIQAIRD-GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 107 ~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
.+.+.++|+.|.|++++++.+.+++.+.+.+ ....|.+..|.++||+++++++.+.+|..++++ +|++|+|+++++..
T Consensus 27 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~ 105 (386)
T PRK07550 27 ADGPLIDLSQAVPGYPPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPE-QVHITSGCNQAFWA 105 (386)
T ss_pred cCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcc-eEEEecCcHHHHHH
Confidence 3457899999999988888999988887754 346799989999999999999999999989888 89999999999999
Q ss_pred HHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHH
Q 013883 186 TILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL 264 (434)
Q Consensus 186 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l 264 (434)
++.+++++||+|++++|+|..+...++..|++++.+++++ .++.+|++.+++++++++++|++++||||||.+++.+++
T Consensus 106 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~NPtG~~~~~~~~ 185 (386)
T PRK07550 106 AMVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELL 185 (386)
T ss_pred HHHHhcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCCCCCCcccCHHHH
Confidence 9999999999999999999999999999999999999975 467789999999999899999999999999999999999
Q ss_pred HHHHHHHHHcCcEEEEcCcCCccccCCCC-ccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcc
Q 013883 265 NVIASLCIENDVLVFSDEVYDKLAFEMDH-ISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL 343 (434)
Q Consensus 265 ~~i~~la~~~~~~iI~Deay~~~~~~~~~-~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~ 343 (434)
++|+++|++||++||+||+|.+|.+++.. ..+....+..++++++.||||.+|++|+|+||+++++++++.+.......
T Consensus 186 ~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~ 265 (386)
T PRK07550 186 HELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIAEIEKFMDTV 265 (386)
T ss_pred HHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHHHHHHHHHHHhhc
Confidence 99999999999999999999998765322 22222223356899999999999999999999999999999988887777
Q ss_pred ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHh
Q 013883 344 TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKE 422 (434)
Q Consensus 344 ~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 422 (434)
..+++.+.|.++..+|.+.++|++++++.++++++.+.+.|++. ++.+ .+.+++|+|+++...+. ++.+++++|+++
T Consensus 266 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~g~~~~~~~~~~~~~-~~~~l~~~l~~~ 343 (386)
T PRK07550 266 AICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARLPGWEL-LASGAYFAYVRHPFPDR-PSREVARRLAKE 343 (386)
T ss_pred ccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcee-CCCceEEEEecCCCCCC-CHHHHHHHHHHh
Confidence 78889999999999998767888999999999999999999886 6765 46689999998753233 578999998888
Q ss_pred cCeEEECCCCC
Q 013883 423 VGVVAIPTSVF 433 (434)
Q Consensus 423 ~GV~v~pG~~F 433 (434)
+||.+.||+.|
T Consensus 344 ~gv~v~pg~~f 354 (386)
T PRK07550 344 AGILCLPGTMF 354 (386)
T ss_pred cCEEEeCchhh
Confidence 89999999877
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=378.64 Aligned_cols=324 Identities=25% Similarity=0.438 Sum_probs=281.3
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHc-CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRD-GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
++++++|+.|.|+...++.+.+.+.+.+.+ ....|++..|.++||+++++++.+.+|..++++++|++|+|+++++..+
T Consensus 28 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~ 107 (395)
T PRK08175 28 GEDIIDFSMGNPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHL 107 (395)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHH
Confidence 357899999999988888787777776654 3478999999999999999999988898888764699999999999999
Q ss_pred HHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc---cCCcEEEecCCCCCcccCCCHHH
Q 013883 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS---KNTRAILMNTPHNPTGKMFTREE 263 (434)
Q Consensus 187 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~---~~~~~i~~~~p~NPTG~~~~~e~ 263 (434)
+..+++|||+|++++|+|+.+...+...|++++.+++++++ .+++.++++++ +++++|++++||||||.+++.++
T Consensus 108 ~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~--~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~ 185 (395)
T PRK08175 108 MLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGV--DFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEF 185 (395)
T ss_pred HHHhCCCCCEEEEcCCCCcchHHHHHHcCCeEEEEecccCC--CcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHH
Confidence 99999999999999999999999999999999999997532 24778887776 37899999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhc
Q 013883 264 LNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSF 342 (434)
Q Consensus 264 l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~ 342 (434)
+++|+++|++||++||+||+|.++.+++. ..++..++...+++++++||||.||++|+|+||+++++++++++.+.+..
T Consensus 186 ~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~l~~~~~~~~~~ 265 (395)
T PRK08175 186 FEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSY 265 (395)
T ss_pred HHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCCHHHHHHHHHHHhh
Confidence 99999999999999999999999988653 23444444335678999999999999999999999999999999888876
Q ss_pred cccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCC-CCCHHHHHHHHHH
Q 013883 343 LTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFG-HETDIAFCEYLIK 421 (434)
Q Consensus 343 ~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ll~ 421 (434)
..++.+.+.|.++..+|.+.+++++++++.++++++.+.+.|++.|+.+.++++++|+|+++++.. ..++.+++++|++
T Consensus 266 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~~g~~i~i~l~~~~~~~~~~~~~~~l~~ 345 (395)
T PRK08175 266 HDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLN 345 (395)
T ss_pred cccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEEEEECCcccCCCCHHHHHHHHHH
Confidence 678888889999999998777889999999999999999999999998888999999999986421 1146789988888
Q ss_pred hcCeEEECCCCC
Q 013883 422 EVGVVAIPTSVF 433 (434)
Q Consensus 422 ~~GV~v~pG~~F 433 (434)
++||.|.||+.|
T Consensus 346 ~~gv~v~p~~~f 357 (395)
T PRK08175 346 EAKVCVSPGIGF 357 (395)
T ss_pred hCCEEEeCchhh
Confidence 889999999877
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-48 Score=383.45 Aligned_cols=295 Identities=19% Similarity=0.374 Sum_probs=251.2
Q ss_pred cCCeeEeCCCCCC--------C----------------------CCcHHHHHHHHHHHHc--CCCCCCCCCCcHHHHHHH
Q 013883 108 KHGAINLGQGFPN--------F----------------------DGPDFVKDAAIQAIRD--GKNQYARGHGVPEFNSAI 155 (434)
Q Consensus 108 ~~~~i~l~~g~p~--------~----------------------~~~~~v~~~~~~~~~~--~~~~Y~~~~G~~~lr~~i 155 (434)
+.++|+|++|+|+ + .+++.+.++....... ....|++..|.++||+++
T Consensus 37 g~~vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~~a~~~l~~~~~~~~~Y~~~~G~~~LR~ai 116 (407)
T PLN02368 37 GKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKEV 116 (407)
T ss_pred hhhhhcccCCChhHcCCCCchHHHHHHHHhcCchhcCCccccccCCHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHH
Confidence 3478999999996 3 1455565555432222 356899999999999999
Q ss_pred HHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc-CCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHH
Q 013883 156 ASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI-NPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIE 233 (434)
Q Consensus 156 a~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~ 233 (434)
++++.+.+|..++++ +|++|+|+++++..++.+++ ++||+|++++|+|+.|...+...|++++.+++++ ++|++|++
T Consensus 117 a~~~~~~~g~~~~~~-~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~ 195 (407)
T PLN02368 117 AEFIERRDGYPSDPE-LIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVN 195 (407)
T ss_pred HHHHHHhcCCCCChh-hEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHH
Confidence 999998889989998 89999999999999999987 7999999999999999999999999999999975 35899999
Q ss_pred HHHhhccc------CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC--CccccCCC-----
Q 013883 234 ELKSTISK------NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD--HISIASLP----- 300 (434)
Q Consensus 234 ~l~~~i~~------~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~--~~~~~~~~----- 300 (434)
.+++++++ +++++++++||||||.+++.+++++|+++|++||++||+||+|.++.|++. +.++..+.
T Consensus 196 ~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~ 275 (407)
T PLN02368 196 NLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGP 275 (407)
T ss_pred HHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcc
Confidence 99999864 689999999999999999999999999999999999999999999998763 33433221
Q ss_pred --CCCCceEEEccCChhh-ccccceeeeEE---eChhhHHHHHHHhhccccCCchHHHHHHHHHHhCCh-------HHH-
Q 013883 301 --GMYERTVTMNSLGKTF-SLTGWKIGWAI---APPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPE-------TYY- 366 (434)
Q Consensus 301 --~~~~~~i~i~S~SK~~-g~~G~R~G~~~---~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~-------~~~- 366 (434)
...+++|+++||||.| |++|||+||++ +++++++.+.+... ..++++.+.|.++..+|+.++ ++.
T Consensus 276 ~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~-~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~ 354 (407)
T PLN02368 276 PISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVAS-IALSPNVSGQIFMGLMVNPPKPGDISYDQFVR 354 (407)
T ss_pred cccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhc-ccCCCCcHHHHHHHHHhCCCCCCCccHHHHHH
Confidence 1135899999999998 89999999999 48899998888753 467889999999999998542 234
Q ss_pred --HHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeec
Q 013883 367 --EELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDH 404 (434)
Q Consensus 367 --~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 404 (434)
+++++.|++||+.+.+.|+++ |+.+.+|+|+||+|+++
T Consensus 355 ~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i 395 (407)
T PLN02368 355 ESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQI 395 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCC
Confidence 456899999999999999997 99999999999999876
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=376.47 Aligned_cols=326 Identities=36% Similarity=0.707 Sum_probs=288.8
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
..+.++|+.|+|++++++.+.+++.+.+.+....|++..|..+||+++++++.+.+|..++++ +|++|+|+++++..++
T Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~~~~ 108 (393)
T PRK05764 30 GRDVISLGAGEPDFDTPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPS-QVIVTTGAKQALYNAF 108 (393)
T ss_pred cCCEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHH-HEEEeCCcHHHHHHHH
Confidence 347899999999999889999999888876666799999999999999999998888888888 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
.+++++||.|++++|+|..+..+++..|++++.++.++ .++.+|++.++++++++++++++++||||||.+++.+++++
T Consensus 109 ~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~~~~ 188 (393)
T PRK05764 109 MALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEELEA 188 (393)
T ss_pred HHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCCCCCCcccCHHHHHH
Confidence 99999999999999999999999999999999999975 35789999999999888999999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCC-CccccCC-CCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccc
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMD-HISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT 344 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~-~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~ 344 (434)
|+++|++||+++|+||+|.++.+++. ..++..+ .+..+++++++||||.+|++|+|+||+++++++++++........
T Consensus 189 l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~~~~~~~~~~~~~~~ 268 (393)
T PRK05764 189 IADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGPKELIKAMSKLQSHST 268 (393)
T ss_pred HHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEecCHHHHHHHHHHHhhcc
Confidence 99999999999999999999988653 2344444 334578999999999999999999999999999999988877667
Q ss_pred cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCC---CHHHHHHHHH
Q 013883 345 FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHE---TDIAFCEYLI 420 (434)
Q Consensus 345 ~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Ll 420 (434)
.+++.+.|.++..+|+..+++++++++.++++++.+.+.|+++ |+.+.+++|++|+|+++.+.... ++.+++++|+
T Consensus 269 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 348 (393)
T PRK05764 269 SNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLGKSITDSLEFAEALL 348 (393)
T ss_pred cCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcceEEEEecccccccccCCHHHHHHHHH
Confidence 7889999999999998556788899999999999999999998 99988999999999987542111 2578888988
Q ss_pred HhcCeEEECCCCCC
Q 013883 421 KEVGVVAIPTSVFY 434 (434)
Q Consensus 421 ~~~GV~v~pG~~F~ 434 (434)
+++||.+.||+.|.
T Consensus 349 ~~~gi~v~~g~~f~ 362 (393)
T PRK05764 349 EEAGVAVVPGIAFG 362 (393)
T ss_pred HhCCEEEccccccC
Confidence 88899999998873
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-47 Score=375.22 Aligned_cols=310 Identities=23% Similarity=0.374 Sum_probs=265.3
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+.++++|+.|.|++++++.+.+++.+... ....|++..|.++||+++++++.+.+|.+++++ +|++|+|+++++..++
T Consensus 23 ~~~~i~l~~~~p~~~~~~~~~~a~~~~~~-~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~-~I~it~G~~~al~~~~ 100 (374)
T PRK05839 23 EYKGLDLTIGEPQFETPKFIQDALKNNAH-LLNKYPKSAGEESLREAQRGFFKRRFKIELKEN-ELIPTFGTREVLFNFP 100 (374)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHhh-ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcc-eEEEecCcHHHHHHHH
Confidence 34899999999999988888888877654 357899999999999999999999999989998 8999999999999988
Q ss_pred HHcc--CCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHH
Q 013883 188 LGLI--NPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL 264 (434)
Q Consensus 188 ~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l 264 (434)
..++ .+||.|++++|+|+.|...+...|++++.+++++ .++.+|++..+ + +++++|++++||||||.+++.+++
T Consensus 101 ~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~--~-~~~k~v~i~nP~NPTG~~~s~~~l 177 (374)
T PRK05839 101 QFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEKE--L-QEVDLVILNSPNNPTGRTLSLEEL 177 (374)
T ss_pred HHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchhh--h-ccccEEEEeCCCCCcCcccCHHHH
Confidence 8775 4789999999999999999999999999999975 35777765443 2 468999999999999999999999
Q ss_pred HHHHHHHHHcCcEEEEcCcCCccccCCCCccccCC-----CCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHH
Q 013883 265 NVIASLCIENDVLVFSDEVYDKLAFEMDHISIASL-----PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA 339 (434)
Q Consensus 265 ~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~-----~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~ 339 (434)
++|+++|++||++||+||+|.++.+++...++... ....+++++++||||.|+++|+|+||+++++++++++...
T Consensus 178 ~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~~~~~~~~~~ 257 (374)
T PRK05839 178 IEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDASILKKYKAY 257 (374)
T ss_pred HHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCHHHHHHHHHH
Confidence 99999999999999999999998654433333221 1234799999999999999999999999999999998887
Q ss_pred hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHH
Q 013883 340 HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYL 419 (434)
Q Consensus 340 ~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 419 (434)
+.....+.+.+.|.++..+|.+ ++++++++++++++++.+.+.| ++. .+++++|+|+++. ++.+++++|
T Consensus 258 ~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l---~~~--~p~gg~fi~~~~~-----~~~~~~~~l 326 (374)
T PRK05839 258 RTYLGCASPLPLQKAAAVAWLD-DEHAEFFRNIYAKNLKLAREIL---GIT--IPPATFYVWLPVD-----NDEEFTKKL 326 (374)
T ss_pred HhhcCCCCChHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHhc---CCC--CCCeeEEEEEeCC-----ChHHHHHHH
Confidence 7666678899999999888875 6688899999999999988876 343 6789999999874 367899999
Q ss_pred HHhcCeEEECCCCC
Q 013883 420 IKEVGVVAIPTSVF 433 (434)
Q Consensus 420 l~~~GV~v~pG~~F 433 (434)
++++||.+.||+.|
T Consensus 327 ~~~~gi~v~pg~~f 340 (374)
T PRK05839 327 YQNEGIKVLPGSFL 340 (374)
T ss_pred HHHCCEEEeCchhh
Confidence 88789999999876
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=382.99 Aligned_cols=315 Identities=20% Similarity=0.260 Sum_probs=259.4
Q ss_pred CCeeEeCCCCC---CCCCc--HHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcE--EEcCChH
Q 013883 109 HGAINLGQGFP---NFDGP--DFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEV--TVTSGCT 180 (434)
Q Consensus 109 ~~~i~l~~g~p---~~~~~--~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i--~~t~G~~ 180 (434)
+++|||+.|.| +...| +.+.+++.++++++ ...|.+..|.++||+++++++.+..+..++++ +| ++|+|++
T Consensus 26 ~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~-~i~v~iT~Ga~ 104 (396)
T PRK09257 26 PDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAG-RVATVQTPGGT 104 (396)
T ss_pred cCcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccC-eEEEEecCCcc
Confidence 47899999963 33334 67888887776543 45799999999999999999987766666787 67 9999999
Q ss_pred HHHHHHHHHc--cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcC-CCCCCCCHHHHHhhccc---CCcEEEecCCCCC
Q 013883 181 EAIAATILGL--INPGDEVILFAPFYDSYEATLSMAGAKIKCITLR-PPDFAIPIEELKSTISK---NTRAILMNTPHNP 254 (434)
Q Consensus 181 ~ai~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~~---~~~~i~~~~p~NP 254 (434)
+++.++++.+ ++|||+|++++|+|+.|..+++..|++++.+|+. ++++++|++.++++++. +++++++++||||
T Consensus 105 ~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NP 184 (396)
T PRK09257 105 GALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNP 184 (396)
T ss_pred HHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 9999998766 5899999999999999999999999999999983 44689999999998763 3566677999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC-C-CccccCCCCCCCceEEEccCChhhccccceeeeEEe---C
Q 013883 255 TGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM-D-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA---P 329 (434)
Q Consensus 255 TG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~-~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~---~ 329 (434)
||.+++.+++++|+++|++||++||+||+|.+|.++. . ..++..+....+++++++||||.|+++|+|+||+++ +
T Consensus 185 TG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~ 264 (396)
T PRK09257 185 TGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSVVAED 264 (396)
T ss_pred CCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEEEeCC
Confidence 9999999999999999999999999999999998752 2 334444444457899999999999989999999983 3
Q ss_pred hh----hHHHHHHHhhccccCCchHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHhhhCC----CEeecCC
Q 013883 330 PH----LTWGVRQAHSFLTFATSTPMQWAATAALRAP------ETYYEELKRDYSAKKAILVEGLNAVG----FKVFPSS 395 (434)
Q Consensus 330 ~~----~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~------~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~ 395 (434)
++ ++.+++...+....+++.+.|.++..+|.+. ++++++++++|+++++.+.+.|++.+ +.+..++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~ 344 (396)
T PRK09257 265 AEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPSRDFDFIARQ 344 (396)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccc
Confidence 33 3444444444445667888999999999874 35677899999999999999999874 6778899
Q ss_pred eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 396 GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
||||+|+++ +.+++.+|++++||.+.|..
T Consensus 345 gg~~~w~~l-------~~~~~~~l~~~~~V~~~p~~ 373 (396)
T PRK09257 345 RGMFSYSGL-------TPEQVDRLREEFGVYAVGSG 373 (396)
T ss_pred ceEEEecCC-------CHHHHHHHHHcCCEEEcCCC
Confidence 999999987 23677888899999998853
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=388.99 Aligned_cols=321 Identities=24% Similarity=0.408 Sum_probs=267.6
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHH------------cCCCCCCCCCCcHHHHHHHHHHHHhhcCC--CCCCCCcEEE
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIR------------DGKNQYARGHGVPEFNSAIASRFKKDSGL--EVDPEKEVTV 175 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~--~~~~~~~i~~ 175 (434)
+.|+|+.+++.++. +.+.+.+.+... .....|++..|.++||+++++++.+.+|. .++++ +|++
T Consensus 39 g~i~L~~~En~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~-~Iii 116 (468)
T PLN02450 39 GIIQMGLAENQLSF-DLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPN-KLVL 116 (468)
T ss_pred eeEEeehhHhHhhH-HHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChH-HeEE
Confidence 68999999887766 666666554321 12345999999999999999999987774 47888 8999
Q ss_pred cCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHH-HcCCEEEEEEcCC-CCCCCCHHHHHhhccc------CCcEEE
Q 013883 176 TSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLS-MAGAKIKCITLRP-PDFAIPIEELKSTISK------NTRAIL 247 (434)
Q Consensus 176 t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~i~ 247 (434)
|+|+++++..++.++++|||.|++++|+|+.|...+. ..|++++.|++++ +++.+|++.+++++.+ ++++|+
T Consensus 117 t~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~ 196 (468)
T PLN02450 117 TAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVL 196 (468)
T ss_pred ccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEE
Confidence 9999999999999999999999999999999988888 5899999999874 5788999999988754 789999
Q ss_pred ecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCC--------CCCCceEEEccCChhhcc
Q 013883 248 MNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLP--------GMYERTVTMNSLGKTFSL 318 (434)
Q Consensus 248 ~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~--------~~~~~~i~i~S~SK~~g~ 318 (434)
+++||||||.+++.+++++|+++|++||++||+||+|.++.|++. ..++..+. ...+++++++||||.||+
T Consensus 197 l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l 276 (468)
T PLN02450 197 ITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGL 276 (468)
T ss_pred EecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCC
Confidence 999999999999999999999999999999999999999888753 33322221 135789999999999999
Q ss_pred ccceeeeEEeChh-hHHHHHHHhhccccCCchHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHhhhCCCEeecC
Q 013883 319 TGWKIGWAIAPPH-LTWGVRQAHSFLTFATSTPMQWAATAALRAPE---TYYEELKRDYSAKKAILVEGLNAVGFKVFPS 394 (434)
Q Consensus 319 ~G~R~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~---~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 394 (434)
+|+|+||++++++ +++.+.+... ..+.+.+.|.++..+|++.. +++++++.+++++++.+.+.|++.|+.+.++
T Consensus 277 ~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~~~~ 354 (468)
T PLN02450 277 PGFRVGAIYSNDEMVVSAATKMSS--FGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLKS 354 (468)
T ss_pred CCccEEEEEECCHHHHHHHHHHhh--cCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC
Confidence 9999999999855 5565555432 23578899999999999853 4788899999999999999999999999999
Q ss_pred CeeEEEeeecCCCC----CCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 395 SGTYFVVVDHTPFG----HETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 395 ~~~~~~~~~~~~~~----~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
++|+|+|+++.+.- .....+++++|++++||.+.||+.|+
T Consensus 355 ~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~ 398 (468)
T PLN02450 355 NAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCH 398 (468)
T ss_pred CceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccC
Confidence 99999999985321 11235688888888899999999874
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-47 Score=381.02 Aligned_cols=309 Identities=19% Similarity=0.230 Sum_probs=267.8
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
..++|+.|.|+.+++|.+.+++.++... ...|++..|.++||+++++++++..+ .++ +|++|+|+++++..++.+
T Consensus 86 ~~i~L~~g~p~~~~~p~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~-~Iiit~G~~~al~~~~~~ 160 (431)
T PRK15481 86 PLHDLAGGNPDPQRLPDLSRYFARLSRT-PRLYGDAPVSPELHAWAARWLRDDCP---VAF-EIDLTSGAIDAIERLLCA 160 (431)
T ss_pred hhhhhhcCCCChhHhHHHHHHHHHhhhh-hhhcCCcCCCHHHHHHHHHHHhhccC---CcC-eEEEecCcHHHHHHHHHH
Confidence 5689999999888777777777765543 45799999999999999999875432 244 899999999999999999
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEec-CCCCCcccCCCHHHHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMN-TPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~-~p~NPTG~~~~~e~l~~i~ 268 (434)
+++|||+|++++|+|+.|...++.+|++++.+|+++ .++|++.+++++++++++++++ +||||||.+++.+++++|+
T Consensus 161 l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~--~g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~ 238 (431)
T PRK15481 161 HLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDA--EGMQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAALR 238 (431)
T ss_pred hCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCC--CCCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHH
Confidence 999999999999999999999999999999999974 3589999999998889998887 9999999999999999999
Q ss_pred HHHHHc-CcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCC
Q 013883 269 SLCIEN-DVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT 347 (434)
Q Consensus 269 ~la~~~-~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~ 347 (434)
++|++| +++||+||+|.+|.+++. .+. +....+++++++||||.|| +|+|+||+++++++++.+........++.
T Consensus 239 ~la~~~~~~~ii~De~Y~~~~~~~~-~~~--~~~~~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~~~~~~~~~~~~~~~~ 314 (431)
T PRK15481 239 NLLARYPQVLVIIDDHFALLSSSPY-HSV--IPQTTQRWALIRSVSKALG-PDLRLAFVASDSATSARLRLRLNSGTQWV 314 (431)
T ss_pred HHHHhcCCceEEecCchhhhccCCC-CCC--CcCCCCCEEEEeeeccccC-CCceeEEEeCCHHHHHHHHHHHhccccCC
Confidence 999999 999999999999976532 222 2223468999999999999 99999999999999999887666556778
Q ss_pred chHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCe
Q 013883 348 STPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGV 425 (434)
Q Consensus 348 ~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV 425 (434)
+.+.|.++..+|++. +++++++++.++++++.+.+.|++.|+.+..+++|+|+|++++. ++.+++++|++ +||
T Consensus 315 s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~p~gg~f~~~~l~~----~~~~~~~~l~~-~gV 389 (431)
T PRK15481 315 SHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQYGIAIPSPGDGLNLWLPLDT----DSQATALTLAK-SGW 389 (431)
T ss_pred CHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCeEEEEEECCC----CHHHHHHHHHH-CCc
Confidence 999999999999985 46788999999999999999999999988789999999999853 46788888864 699
Q ss_pred EEECCCCCC
Q 013883 426 VAIPTSVFY 434 (434)
Q Consensus 426 ~v~pG~~F~ 434 (434)
.+.||+.|+
T Consensus 390 ~v~pg~~f~ 398 (431)
T PRK15481 390 LVREGEAFG 398 (431)
T ss_pred EEecCCccc
Confidence 999999884
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-47 Score=381.26 Aligned_cols=314 Identities=18% Similarity=0.234 Sum_probs=248.8
Q ss_pred CCeeEeCCC-CCCCCCcHHHHHHHHHH----HHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcE-----EEcC
Q 013883 109 HGAINLGQG-FPNFDGPDFVKDAAIQA----IRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEV-----TVTS 177 (434)
Q Consensus 109 ~~~i~l~~g-~p~~~~~~~v~~~~~~~----~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i-----~~t~ 177 (434)
+.+|+|+.| .|+...++.+.+.+.++ +..+ ..+|++..|.++||+++++++.+..+...+++ +| +.++
T Consensus 48 ~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~-~i~~~~i~~g~ 126 (423)
T PLN02397 48 PVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKEN-RVATVQCLSGT 126 (423)
T ss_pred cceEecccceeeCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcC-eeEeeecccch
Confidence 478999999 57876666555555444 3333 34799999999999999999976655444333 33 3344
Q ss_pred ChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcC-CCCCCCCHHHHHhhcc---cCCcEEEecCCCC
Q 013883 178 GCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLR-PPDFAIPIEELKSTIS---KNTRAILMNTPHN 253 (434)
Q Consensus 178 G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~---~~~~~i~~~~p~N 253 (434)
|+.+ +...+..++.|||+|++++|+|+.|...++..|++++.+|+. ++++++|++.+++.+. ++++++++++|||
T Consensus 127 Ga~~-l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~N 205 (423)
T PLN02397 127 GSLR-LGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHN 205 (423)
T ss_pred HHHH-HHHHHHHHhCCCCEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 4433 444444556799999999999999999999999999999984 3468999998888775 4678888999999
Q ss_pred CcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC---CCccccCCCCCCCceEEEccCChhhccccceeeeEE--e
Q 013883 254 PTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM---DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI--A 328 (434)
Q Consensus 254 PTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~---~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~--~ 328 (434)
|||.+++.+++++|+++|++||++||+||+|.+|.+++ ...++..+....+++|+++||||.|+++|||+||++ +
T Consensus 206 PTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~ 285 (423)
T PLN02397 206 PTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVC 285 (423)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEe
Confidence 99999999999999999999999999999999999865 223333443334679999999999999999999985 4
Q ss_pred -ChhhHH----HHHHHhhccccCCchHHHHHHHHHHhCCh---HH---HHHHHHHHHHHHHHHHHHhhhCC----CEeec
Q 013883 329 -PPHLTW----GVRQAHSFLTFATSTPMQWAATAALRAPE---TY---YEELKRDYSAKKAILVEGLNAVG----FKVFP 393 (434)
Q Consensus 329 -~~~~~~----~l~~~~~~~~~~~~~~~q~a~~~~L~~~~---~~---~~~~~~~~~~~~~~l~~~L~~~g----~~~~~ 393 (434)
+++++. .+....+...++++.+.|.++..+|++++ +| +++++++++++|+.+.+.|+++| |++..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~ 365 (423)
T PLN02397 286 KSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHIT 365 (423)
T ss_pred CCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccc
Confidence 555443 44455555566788889999999998742 34 67889999999999999999987 88889
Q ss_pred CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 394 SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
++|+||+|+++. .+|+++|++++||++.++.
T Consensus 366 p~gg~fl~~~l~-------~~~~~~Ll~~~~V~v~~~~ 396 (423)
T PLN02397 366 KQIGMFSFTGLN-------KEQVDRMTKEYHIYMTRDG 396 (423)
T ss_pred CCceEEEecCCC-------HHHHHHHHHhCCEEECCCC
Confidence 999999999872 4699999999999998765
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-46 Score=369.92 Aligned_cols=319 Identities=30% Similarity=0.551 Sum_probs=277.8
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
.++++|+.|.|++++++.+.+++.+... ....|.+..|.++||+++++++. .+|..++++ +|++|+|+++++..++.
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~-~~~~~~~~~-~i~~t~G~~~al~~~~~ 106 (397)
T PRK07568 30 IKVYHLNIGQPDIKTPEVFFEAIKNYDE-EVLAYSHSQGIPELREAFAKYYK-KWGIDVEPD-EILITNGGSEAILFAMM 106 (397)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHhc-CCcCcCCCCCCHHHHHHHHHHHH-HhCCCCCcc-eEEEcCChHHHHHHHHH
Confidence 4689999999998888888888876643 45679999999999999999998 578888888 89999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCC-CCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFA-IPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~-~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
.++++||+|++++|+|..+...++..|++++.++++. .++. .+++.+++++++++++|++++||||||.+++.+++++
T Consensus 107 ~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~ 186 (397)
T PRK07568 107 AICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELEM 186 (397)
T ss_pred HhcCCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCCCCCCccCCHHHHHH
Confidence 9999999999999999999999999999999999874 3344 3689999999889999999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeC-hhhHHHHHHHhhccc
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLT 344 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~~ 344 (434)
|+++|+++|++||+||+|.+|.+++. ..++..+.+..+++++++||||.+|++|+|+||++++ +++++.+..... ..
T Consensus 187 i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~-~~ 265 (397)
T PRK07568 187 LAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQ-AR 265 (397)
T ss_pred HHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhh-cc
Confidence 99999999999999999999988763 3455555544689999999999999999999999985 678877765543 24
Q ss_pred cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHh-
Q 013883 345 FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKE- 422 (434)
Q Consensus 345 ~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~- 422 (434)
++.+.+.|.++..+|++.++++++++..++++++.+.+.|++. |+.+..++|++|+|++++. .++.+++++|+++
T Consensus 266 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~---~~~~~~~~~l~~~~ 342 (397)
T PRK07568 266 LSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFYIIAKLPV---DDAEDFAKWLLTDF 342 (397)
T ss_pred CCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcceEEEEecCC---CCHHHHHHHHHhhc
Confidence 6889999999999998777899999999999999999999887 7888889999999998753 2577899988864
Q ss_pred ----cCeEEECCCCCC
Q 013883 423 ----VGVVAIPTSVFY 434 (434)
Q Consensus 423 ----~GV~v~pG~~F~ 434 (434)
+||.+.||+.||
T Consensus 343 ~~~~~gv~v~pg~~f~ 358 (397)
T PRK07568 343 NYNGETVMVAPASGFY 358 (397)
T ss_pred ccccceEEEeCchHhc
Confidence 699999998884
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=377.68 Aligned_cols=317 Identities=21% Similarity=0.328 Sum_probs=253.1
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHH-HHHHhhcCCCCCCCC--cEEEcCChHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIA-SRFKKDSGLEVDPEK--EVTVTSGCTEAIAAT 186 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia-~~l~~~~g~~~~~~~--~i~~t~G~~~ai~~~ 186 (434)
+.|+|++|.|++++++.+.+.+ +++.. ..|+++.|..+++++++ +++.+.++....+.+ +|++|+|+++++..+
T Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~-~~~~~--~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~ 171 (521)
T TIGR03801 95 DIISYVIDQLGFDPDAFLYEMC-DGIIG--DNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYI 171 (521)
T ss_pred HHHhhcCCCCCCCCCHHHHHHH-HHhhc--CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHH
Confidence 5699999999999877765544 44332 25877777788887777 566665544333433 799999999999998
Q ss_pred HHH-----ccCCCCeEEEcCCCchhHHHHHHHc--CCEEEEEEcCCC-C-----CCCCHHHHHhhcccCCcEEEecCCCC
Q 013883 187 ILG-----LINPGDEVILFAPFYDSYEATLSMA--GAKIKCITLRPP-D-----FAIPIEELKSTISKNTRAILMNTPHN 253 (434)
Q Consensus 187 ~~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~--G~~~~~v~~~~~-~-----~~~d~~~l~~~i~~~~~~i~~~~p~N 253 (434)
+.+ +++|||+|++++|+|+.|..++... |++++.++.+++ + |.+|++.+++++++++|+|++++|||
T Consensus 172 ~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l~nP~N 251 (521)
T TIGR03801 172 FDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFVVNPSN 251 (521)
T ss_pred HHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEEeCCCC
Confidence 887 7899999999999999999998776 678888887642 2 88999999999888999999999999
Q ss_pred CcccCCCHHHHHHHHHHHHHc--CcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh
Q 013883 254 PTGKMFTREELNVIASLCIEN--DVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH 331 (434)
Q Consensus 254 PTG~~~~~e~l~~i~~la~~~--~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~ 331 (434)
|||.+++.+++++|+++|++| |++||+||+|..|.+ ++.++... .++++++++||||.||++|||+||++++++
T Consensus 252 PTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~sl~~~--~~~~vI~v~SfSK~fg~~G~RlG~i~~~~~ 327 (521)
T TIGR03801 252 PPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD--DFRSLFAE--LPYNTIGVYSFSKYFGATGWRLGTIALHKD 327 (521)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc--cccchhhh--CCCCEEEEEcchhhccCchhhhhhhhcCch
Confidence 999999999999999999987 999999999999875 33444333 357999999999999999999999999865
Q ss_pred -----hHH--------HH------------------------HHHhhccccCCchHHHH-----HHHHHHhCChHHHHHH
Q 013883 332 -----LTW--------GV------------------------RQAHSFLTFATSTPMQW-----AATAALRAPETYYEEL 369 (434)
Q Consensus 332 -----~~~--------~l------------------------~~~~~~~~~~~~~~~q~-----a~~~~L~~~~~~~~~~ 369 (434)
++. .+ +++....+.+.+.+.|. ++.++|+..++|.+++
T Consensus 328 ~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~~~~y~~~~ 407 (521)
T TIGR03801 328 NIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDKENAYKAET 407 (521)
T ss_pred HHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccchhHHHHH
Confidence 221 11 44555566778888876 3445566667899999
Q ss_pred HHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCC--------------CCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 370 KRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGH--------------ETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
++.+++|++.+.+.| ...+...+++|+||+|+++...+. .++.+++.+|++++||.+.||..|+
T Consensus 408 ~~~~~~R~~~l~~~L-g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg 485 (521)
T TIGR03801 408 KDICRRREKLLFRGL-GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGIVLLPGGGFG 485 (521)
T ss_pred HHHHHHHHHHHHHhc-CCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCEEEeCchhcC
Confidence 999999999999998 223334678999999999864321 1478999999999999999999985
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=380.46 Aligned_cols=322 Identities=22% Similarity=0.404 Sum_probs=263.4
Q ss_pred CeeEeCCCCCCC--CC-cHHHHHHHHHHHHc--------CCCCCCCCCCcHHHHHHHHHHHHhhcC--CCCCCCCcEEEc
Q 013883 110 GAINLGQGFPNF--DG-PDFVKDAAIQAIRD--------GKNQYARGHGVPEFNSAIASRFKKDSG--LEVDPEKEVTVT 176 (434)
Q Consensus 110 ~~i~l~~g~p~~--~~-~~~v~~~~~~~~~~--------~~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~~i~~t 176 (434)
+.|+|+..++.+ +. ++++++.....+.. ....|.+..|.++||+++++++++.+| +.++++ +|++|
T Consensus 47 g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe-~Ivit 125 (496)
T PLN02376 47 GIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPE-RVVMS 125 (496)
T ss_pred ceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChh-hEEEc
Confidence 689999987655 33 45555443321111 124688899999999999999998888 668898 89999
Q ss_pred CChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHH-HcCCEEEEEEcCC-CCCCCCHHHHHhhcc------cCCcEEEe
Q 013883 177 SGCTEAIAATILGLINPGDEVILFAPFYDSYEATLS-MAGAKIKCITLRP-PDFAIPIEELKSTIS------KNTRAILM 248 (434)
Q Consensus 177 ~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~G~~~~~v~~~~-~~~~~d~~~l~~~i~------~~~~~i~~ 248 (434)
+|+++++..++.++++|||.|++++|+|+.+...+. ..|++++.|+++. +++++|++.+++++. .++|+|++
T Consensus 126 ~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l 205 (496)
T PLN02376 126 GGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLIL 205 (496)
T ss_pred cchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEE
Confidence 999999999999999999999999999999998887 5899999999975 468999999986542 36899999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC-CCccccCCCC-------CCCceEEEccCChhhcccc
Q 013883 249 NTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM-DHISIASLPG-------MYERTVTMNSLGKTFSLTG 320 (434)
Q Consensus 249 ~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~-~~~~~~~~~~-------~~~~~i~i~S~SK~~g~~G 320 (434)
++||||||.+++.+++++|+++|++||++||+||+|.++.|++ .+.++..+.. ..+++++++||||.||++|
T Consensus 206 ~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpG 285 (496)
T PLN02376 206 TNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPG 285 (496)
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCc
Confidence 9999999999999999999999999999999999999998876 3445444421 1245778999999999999
Q ss_pred ceeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCe
Q 013883 321 WKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAP---ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSG 396 (434)
Q Consensus 321 ~R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 396 (434)
+|+||++++ +.+.+.++.... ....+.+.|.++..+|++. ++++++++++++++++.+.+.|++.|+.+.++++
T Consensus 286 lRvG~li~~~~~l~~~~~~~~~--~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~~a 363 (496)
T PLN02376 286 FRVGIVYSFNDSVVSCARKMSS--FGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNA 363 (496)
T ss_pred ceEEEEEECCHHHHHHHHHHhh--cCCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCc
Confidence 999999995 555555554442 2357889999999999874 3566778899999999999999999999999999
Q ss_pred eEEEeeecCCCC-----CCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 397 TYFVVVDHTPFG-----HETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 397 ~~~~~~~~~~~~-----~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
|+|+|+++.+.. .++..+++++|+++.||.+.||+.|+
T Consensus 364 G~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~ 406 (496)
T PLN02376 364 GLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFR 406 (496)
T ss_pred eEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccC
Confidence 999999985421 11236788899888899999999884
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=367.29 Aligned_cols=323 Identities=26% Similarity=0.446 Sum_probs=264.4
Q ss_pred cCCeeEeCCCCC---CCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFP---NFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p---~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+++.|+|+.|.| ++++++.+.+++.+.+.. ...|++..|.++||+++++++.+.....++++ +|++|+|+++++.
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~-~i~~t~G~~~~l~ 109 (404)
T PRK09265 32 GHKILKLNIGNPAPFGFEAPDEILRDVIRNLPT-AQGYSDSKGLFSARKAIMQYYQQKGIPDVDVD-DIYIGNGVSELIV 109 (404)
T ss_pred CCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhc-CCCCCCCCCcHHHHHHHHHHHhccCCCCCCcc-cEEEeCChHHHHH
Confidence 457899999988 456778888887776653 46799999999999999999986555468888 8999999999999
Q ss_pred HHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHH
Q 013883 185 ATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREE 263 (434)
Q Consensus 185 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~ 263 (434)
.++.+++++||+|++++|+|..+...+...|++++.++.+. .++.+|++.+++++++++++|++++||||||.+++.++
T Consensus 110 ~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~~~~~ 189 (404)
T PRK09265 110 MAMQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKEL 189 (404)
T ss_pred HHHHHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccccceEEEEECCCCCCCcCCCHHH
Confidence 99999999999999999999999999999999999998864 35789999999999889999999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEe--Chh----hHHHH
Q 013883 264 LNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA--PPH----LTWGV 336 (434)
Q Consensus 264 l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~--~~~----~~~~l 336 (434)
+++|+++|++||++||+||+|.++.|++. ..++..+.. ..++++++||||.+|++|+|+||+++ +++ +++.+
T Consensus 190 ~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~ 268 (404)
T PRK09265 190 LEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAP-DLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGL 268 (404)
T ss_pred HHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCC-CceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHH
Confidence 99999999999999999999999988753 334444432 24689999999999999999999996 343 33333
Q ss_pred HHHhhccccCCchHHHHHHHHHHhCChHH--HHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCC--CCCC
Q 013883 337 RQAHSFLTFATSTPMQWAATAALRAPETY--YEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPF--GHET 411 (434)
Q Consensus 337 ~~~~~~~~~~~~~~~q~a~~~~L~~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--~~~~ 411 (434)
... ....++++.+.|.++..+|.+.+.+ +...+++++++++.+.+.|+++ |+.+.++++|+|+|++++.. +..+
T Consensus 269 ~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~~l~~~~~~~~~~~~~ 347 (404)
T PRK09265 269 DML-ASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGVSCVKPKGALYAFPKLDPKVYPIHD 347 (404)
T ss_pred HHH-hccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEEEEecccccCCCC
Confidence 322 2345788899999999999764321 1122356778899999999887 88888999999999987542 1223
Q ss_pred HHHHHHHHHHhcCeEEECCCCCC
Q 013883 412 DIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 412 ~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+.+++.++++++||.+.||+.|+
T Consensus 348 ~~~~~~~~l~~~gv~v~pg~~F~ 370 (404)
T PRK09265 348 DEQFVLDLLLQEKVLLVQGTGFN 370 (404)
T ss_pred HHHHHHHHHHhCCEEEECchhhC
Confidence 55666667778899999999883
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=365.74 Aligned_cols=324 Identities=25% Similarity=0.477 Sum_probs=277.2
Q ss_pred cCCeeEeCCCCCC----CCCcHHHHHHHHHHHHcCC-CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 108 KHGAINLGQGFPN----FDGPDFVKDAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 108 ~~~~i~l~~g~p~----~~~~~~v~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+.+.++|+.|.|+ +++++.+.+++.+.+.... ..|.+..|..+||++++++++..++..++++ +|++|+|++++
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~ii~t~G~t~a 108 (403)
T TIGR01265 30 EKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTAD-DVVLTSGCSQA 108 (403)
T ss_pred CCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHH-HEEEecChHHH
Confidence 4589999999874 6788899999988876543 5798899999999999999998788888888 89999999999
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCH
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTR 261 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~ 261 (434)
+.+++.+++++||+|++++|+|..+...+...|++++.+++++ +++++|++.++++++++++++++++||||||.+++.
T Consensus 109 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~ 188 (403)
T TIGR01265 109 IEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINPSNPCGSVFSR 188 (403)
T ss_pred HHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCccEEEEecCCCCCCCCCCH
Confidence 9999999999999999999999999999999999999998864 357899999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeCh--h-----hH
Q 013883 262 EELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP--H-----LT 333 (434)
Q Consensus 262 e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~--~-----~~ 333 (434)
+++++|+++|+++|++||+||+|.+|.+++. ..++..+.. ..++++++||||.|+++|+|+||++++. + ++
T Consensus 189 ~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~ 267 (403)
T TIGR01265 189 DHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFAS-IVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVL 267 (403)
T ss_pred HHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhcc-CCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHH
Confidence 9999999999999999999999999988763 234455533 3479999999999999999999999842 2 33
Q ss_pred HHHHHHhhccccCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCC---
Q 013883 334 WGVRQAHSFLTFATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFG--- 408 (434)
Q Consensus 334 ~~l~~~~~~~~~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--- 408 (434)
+.+..... ...+++.+.|.++..+|.+ .+.++++.+++++++++.+.+.|+.. |+.+..+++++|+|++++...
T Consensus 268 ~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~ 346 (403)
T TIGR01265 268 QGLKNLLQ-RILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELELFPE 346 (403)
T ss_pred HHHHHHhh-hhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCceeEEEEeccccccCC
Confidence 33444332 2467889999999999975 46789999999999999999999987 788778899999999985421
Q ss_pred CCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 409 HETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 409 ~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
..++.+++++|++++||.+.||+.|+
T Consensus 347 ~~~~~~~~~~l~~~~gv~v~pg~~f~ 372 (403)
T TIGR01265 347 IKDDVDFCEKLVREESVICLPGSAFG 372 (403)
T ss_pred CCCHHHHHHHHHHhCCEEEeCccccC
Confidence 12577899998888899999999874
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=364.57 Aligned_cols=305 Identities=26% Similarity=0.420 Sum_probs=261.1
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCC-CCCCCcEEEcCChHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLE-VDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~-~~~~~~i~~t~G~~~ai~~~~ 187 (434)
.+.++|+.|.|..+.++.+.+++.+... ...|++..|.++||+++++++.+.+|++ ++++ +|++|+|+++++..++
T Consensus 27 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~-~I~it~G~~~~i~~~~ 103 (364)
T PRK07865 27 DGIVDLSVGTPVDPVPPVIQEALAAAAD--APGYPTTAGTPELREAIVGWLARRRGVTGLDPA-AVLPVIGSKELVAWLP 103 (364)
T ss_pred CCEEEcCCCCCCCCCCHHHHHHHHHHHh--hCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcc-cEEEccChHHHHHHHH
Confidence 4689999999987778888888876543 3579999999999999999999999987 8888 8999999999999988
Q ss_pred HHc-cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 188 LGL-INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 188 ~~l-~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
..+ +++||+|++++|+|+.|...++..|++++.++ +++.++ ..++++|++++||||||.+++.+++++
T Consensus 104 ~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~--------~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~ 172 (364)
T PRK07865 104 TLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRAD--------SLTELG---PQRPALIWLNSPSNPTGRVLGVDHLRK 172 (364)
T ss_pred HHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecC--------ChhhCC---cccceEEEEcCCCCCCCccCCHHHHHH
Confidence 888 79999999999999999999999999988774 223332 257899999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCCCccccCC---CCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcc
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMDHISIASL---PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL 343 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~---~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~ 343 (434)
|+++|++||++||+||+|.++.+++........ ....+++++++||||.+|++|+|+||++++++++++++..+...
T Consensus 173 i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~~~~~~~~~~~~~~ 252 (364)
T PRK07865 173 VVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAELLEVRKHA 252 (364)
T ss_pred HHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecCHHHHHHHHHHHHhc
Confidence 999999999999999999998886533222111 11347899999999999999999999999999999998877767
Q ss_pred ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhc
Q 013883 344 TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEV 423 (434)
Q Consensus 344 ~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~ 423 (434)
.++.+.+.|.++..+|.+ .+++++.+..++++++.+.+.|++.|+.+..+++++|+|+++.. +..+++++| +++
T Consensus 253 ~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~l-~~~ 326 (364)
T PRK07865 253 GMMVPAPVQAAMVAALGD-DAHVREQRERYARRRAVLRPALEAAGFRVDHSEAGLYLWATRGE----DCWDTVAWL-AER 326 (364)
T ss_pred CCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCccEEEEEeCCC----CHHHHHHHH-HHC
Confidence 788899999999999986 66788899999999999999999999988889999999998632 456777766 456
Q ss_pred CeEEECCCCC
Q 013883 424 GVVAIPTSVF 433 (434)
Q Consensus 424 GV~v~pG~~F 433 (434)
||.+.||..|
T Consensus 327 gv~v~pg~~f 336 (364)
T PRK07865 327 GILVAPGDFY 336 (364)
T ss_pred CEEEeCcccc
Confidence 9999999876
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=369.92 Aligned_cols=318 Identities=25% Similarity=0.419 Sum_probs=280.6
Q ss_pred CCeeEeCCCCCCCC--CcHHHHHHHHHHHHc---C-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 109 HGAINLGQGFPNFD--GPDFVKDAAIQAIRD---G-KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 109 ~~~i~l~~g~p~~~--~~~~v~~~~~~~~~~---~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+..++|+.|.|+.. +.....+++.+.++. . ...|.+..|.++||+++++++....|+.++++ +|++|+|++++
T Consensus 89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~-~IiiT~G~q~a 167 (459)
T COG1167 89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPE-QIVITSGAQQA 167 (459)
T ss_pred CceecCCCCCCCcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcC-eEEEeCCHHHH
Confidence 67899999977653 344566666666543 2 46788889999999999999998999999999 99999999999
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEec-CCCCCcccCCC
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMN-TPHNPTGKMFT 260 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~-~p~NPTG~~~~ 260 (434)
+.++++.+++|||+|++++|+|.+...+++..|++++.||++ +.++|+|.+++.++. ++|+++++ +-|||||.++|
T Consensus 168 l~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d--~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms 245 (459)
T COG1167 168 LDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVD--EDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMS 245 (459)
T ss_pred HHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCC--CCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccC
Confidence 999999999999999999999999999999999999999998 678999999999977 67887664 56999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCc-cccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHH
Q 013883 261 REELNVIASLCIENDVLVFSDEVYDKLAFEMDHI-SIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA 339 (434)
Q Consensus 261 ~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~-~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~ 339 (434)
.+..++|+++|++||++||+||.|++|.|++... ++..+.. .++|++++||||.+. ||+|+||+++++++++++...
T Consensus 246 ~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~-~~rViy~gSFSK~l~-PglRlG~vv~p~~~~~~~~~~ 323 (459)
T COG1167 246 LERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDA-PGRVIYLGSFSKTLA-PGLRLGYVVAPPELIEKLLRL 323 (459)
T ss_pred HHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCC-CCCEEEEeeehhhcc-cccceeeeeCCHHHHHHHHHH
Confidence 9999999999999999999999999999986543 4555543 689999999999998 999999999999999999999
Q ss_pred hhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhC---CCEeecCCeeEEEeeecCCCCCCCHHH
Q 013883 340 HSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAV---GFKVFPSSGTYFVVVDHTPFGHETDIA 414 (434)
Q Consensus 340 ~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (434)
+.....+++.+.|.+++..|.++ ++++++++..|+++++.+.+.|++. +..+..+.||||+|+++++ +. ++.+
T Consensus 324 k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~-~~-~~~~ 401 (459)
T COG1167 324 KQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPE-GI-DARE 401 (459)
T ss_pred HHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCC-CC-CHHH
Confidence 99999999999999999999964 7899999999999999999999986 3677899999999999854 33 5778
Q ss_pred HHHHHHHhcCeEEEC-CCCCC
Q 013883 415 FCEYLIKEVGVVAIP-TSVFY 434 (434)
Q Consensus 415 ~~~~Ll~~~GV~v~p-G~~F~ 434 (434)
+.++++++ ||.+.| |..|+
T Consensus 402 l~~~a~~~-gv~i~~~g~~f~ 421 (459)
T COG1167 402 LLAAALEK-GVVVTPLGSAFS 421 (459)
T ss_pred HHHHHHHC-CCEEEcCCcccc
Confidence 88888765 999999 88875
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=341.74 Aligned_cols=323 Identities=28% Similarity=0.432 Sum_probs=293.4
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
.++++.|.+...|++.+|.+.+++++.++++.++|+ .+..++.+++++|..++++..++++ .|+++.|..-++..++
T Consensus 24 ~~DvlPmWVADMDf~~pp~i~~Al~~rvdhGvfGY~--~~~~~~~~ai~~w~~~r~~~~i~~e-~i~~~p~VVpgi~~~I 100 (388)
T COG1168 24 NEDVLPMWVADMDFPTPPEIIEALRERVDHGVFGYP--YGSDELYAAIAHWFKQRHQWEIKPE-WIVFVPGVVPGISLAI 100 (388)
T ss_pred CCCcceeeeecccCCCCHHHHHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHhcCCCCCcc-eEEEcCcchHhHHHHH
Confidence 358999999999999999999999999999989998 4667899999999999999999999 7999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC--CCCCCHHHHHhhcccC-CcEEEecCCCCCcccCCCHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP--DFAIPIEELKSTISKN-TRAILMNTPHNPTGKMFTREEL 264 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~--~~~~d~~~l~~~i~~~-~~~i~~~~p~NPTG~~~~~e~l 264 (434)
+.+++|||.|++..|.|+++....+..|.+++..|+..+ .+.+|++.||+++.+. .++.++||||||||.+.+.|++
T Consensus 101 ~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL 180 (388)
T COG1168 101 RALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEEL 180 (388)
T ss_pred HHhCcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHH
Confidence 999999999999999999999999999999999999753 4677999999999774 6999999999999999999999
Q ss_pred HHHHHHHHHcCcEEEEcCcCCccccCC-CCccccCCCC-CCCceEEEccCChhhccccceeeeEEeChh-hHH-HHHHHh
Q 013883 265 NVIASLCIENDVLVFSDEVYDKLAFEM-DHISIASLPG-MYERTVTMNSLGKTFSLTGWKIGWAIAPPH-LTW-GVRQAH 340 (434)
Q Consensus 265 ~~i~~la~~~~~~iI~Deay~~~~~~~-~~~~~~~~~~-~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~-~~~-~l~~~~ 340 (434)
.+|.++|++||+.||.||+|+++.+.| .+.++..+.. ..++.+.+.|.||+|+++|+.+++++.+.+ +.. .++.+.
T Consensus 181 ~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~ 260 (388)
T COG1168 181 RKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLK 260 (388)
T ss_pred HHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHH
Confidence 999999999999999999999999998 6666666643 247899999999999999999999888644 323 345555
Q ss_pred hccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC--CCEeecCCeeEEEeeecCCCCCCCHHHHHHH
Q 013883 341 SFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV--GFKVFPSSGTYFVVVDHTPFGHETDIAFCEY 418 (434)
Q Consensus 341 ~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (434)
.....+++.++..|..+++++++.|++++++-++.+++++.+.|++. ++++..|+|.|.+|+++.+++. ++.++.+.
T Consensus 261 ~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~gTYL~WLD~r~l~l-~d~~l~~~ 339 (388)
T COG1168 261 RNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTYLAWLDCRELGL-DDSELAEF 339 (388)
T ss_pred HhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCCCceeeeeeccccCC-ChHHHHHH
Confidence 56678899999999999999999999999999999999999999986 8999999999999999999887 46799999
Q ss_pred HHHhcCeEEECCCCCC
Q 013883 419 LIKEVGVVAIPTSVFY 434 (434)
Q Consensus 419 Ll~~~GV~v~pG~~F~ 434 (434)
|+++.+|.+.+|..|.
T Consensus 340 ll~~akVal~~G~~FG 355 (388)
T COG1168 340 LLEEAKVALSPGSTFG 355 (388)
T ss_pred HHHhhcEeccCCCccC
Confidence 9999999999999985
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=371.23 Aligned_cols=321 Identities=23% Similarity=0.414 Sum_probs=265.3
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHH------------cCCCCCCCCCCcHHHHHHHHHHHHhhcCC--CCCCCCcEEE
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIR------------DGKNQYARGHGVPEFNSAIASRFKKDSGL--EVDPEKEVTV 175 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~--~~~~~~~i~~ 175 (434)
+.|||+..++.+. .+++.+.+.+... .....|.+..|.++||+++|+++++.+|. .++++ +|++
T Consensus 48 g~i~l~~aeN~l~-~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~-~Ivi 125 (447)
T PLN02607 48 GVIQMGLAENQVS-FDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPD-RIVL 125 (447)
T ss_pred ceEEEechhhhhh-HHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHH-HeEE
Confidence 6899999876542 3334444444322 01245888899999999999999988773 58888 8999
Q ss_pred cCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHH-HcCCEEEEEEcCC-CCCCCCHHHHHhhccc------CCcEEE
Q 013883 176 TSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLS-MAGAKIKCITLRP-PDFAIPIEELKSTISK------NTRAIL 247 (434)
Q Consensus 176 t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~i~ 247 (434)
|+|+++++.+++.++++|||.|+++.|+|+++...+. ..|++++.|+++. +++.+|++.++++++. ++|+|+
T Consensus 126 t~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~ll 205 (447)
T PLN02607 126 TAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVL 205 (447)
T ss_pred cCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEE
Confidence 9999999999999999999999999999999988777 5899999999875 4578999999998864 789999
Q ss_pred ecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC-CCccccCCC------CCCCceEEEccCChhhcccc
Q 013883 248 MNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM-DHISIASLP------GMYERTVTMNSLGKTFSLTG 320 (434)
Q Consensus 248 ~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~-~~~~~~~~~------~~~~~~i~i~S~SK~~g~~G 320 (434)
+++||||||.+++.+++++|+++|++||+++|+||+|.++.|++ .+.++..+. +..+++++++||||.||++|
T Consensus 206 l~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~G 285 (447)
T PLN02607 206 ITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPG 285 (447)
T ss_pred EeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCc
Confidence 99999999999999999999999999999999999999988875 344444321 22578999999999999999
Q ss_pred ceeeeEEe-ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCe
Q 013883 321 WKIGWAIA-PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP---ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSG 396 (434)
Q Consensus 321 ~R~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 396 (434)
+|+||+++ +++++..++.... ...++.+.|.++..+|++. ++++++++++++++++.+.+.|++.|+.+.++++
T Consensus 286 lRvG~ivs~n~~l~~~~~~~~~--~~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~~~~a 363 (447)
T PLN02607 286 FRVGTIYSYNDKVVTTARRMSS--FTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECLKGNA 363 (447)
T ss_pred ceEEEEEEcCHHHHHHHHHHhh--cCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCe
Confidence 99999998 5667666665542 2356888999999999985 3677888999999999999999999999999999
Q ss_pred eEEEeeecCCCC----CCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 397 TYFVVVDHTPFG----HETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 397 ~~~~~~~~~~~~----~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
|+|+|+++++.- .+...+++++|++++||.|.||+.|.
T Consensus 364 g~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~ 405 (447)
T PLN02607 364 GLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCH 405 (447)
T ss_pred eEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccC
Confidence 999999986431 12234788889888899999999873
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=355.00 Aligned_cols=306 Identities=27% Similarity=0.407 Sum_probs=261.8
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCC-CCCCCcEEEcCChHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLE-VDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~-~~~~~~i~~t~G~~~ai~~~ 186 (434)
.++.+||+.|+|+.+.++.+.+++.++.. ...|++..|.++||+++++++.+.+|++ ++++ +|++|+|+++++..+
T Consensus 20 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~-~I~it~G~~~~i~~~ 96 (357)
T TIGR03539 20 PDGIVDLSVGTPVDPVPPLIRAALAAAAD--APGYPQTWGTPELREAIVDWLERRRGVPGLDPT-AVLPVIGTKELVAWL 96 (357)
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHh--hCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcC-eEEEccChHHHHHHH
Confidence 34689999999988888888888876653 4679999999999999999999988987 9998 899999999999999
Q ss_pred HHHc-cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHH
Q 013883 187 ILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 187 ~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
+..+ +++||.|++++|+|+.+...++..|++++.++ |++.+. ..++++|++++||||||.+++.++++
T Consensus 97 ~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~--------~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~ 165 (357)
T TIGR03539 97 PTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAAD--------DPTELD---PVGPDLIWLNSPGNPTGRVLSVDELR 165 (357)
T ss_pred HHHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccC--------ChhhcC---ccCccEEEEeCCCCCcCccCCHHHHH
Confidence 8888 79999999999999999999999999988763 233332 24789999999999999999999999
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCCCccccC---CCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhc
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMDHISIAS---LPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSF 342 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~---~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~ 342 (434)
+|+++|++||++||+||+|.++.+++....... .....+++++++||||.||++|+|+||+++++++++.++..+..
T Consensus 166 ~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~~~~~~~~~~~~~~ 245 (357)
T TIGR03539 166 AIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELLTVRKH 245 (357)
T ss_pred HHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEecCHHHHHHHHHHHhh
Confidence 999999999999999999999887654322211 11235689999999999999999999999999999999888776
Q ss_pred cccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHh
Q 013883 343 LTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKE 422 (434)
Q Consensus 343 ~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 422 (434)
..++++.+.|.++..+|++ .++++..+..++++++.+.+.|++.|+.+.++++++|+|+++.. +..++.++| ++
T Consensus 246 ~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~p~~~~~~~~~~~~----~~~~~~~~l-~~ 319 (357)
T TIGR03539 246 AGLMVPAPVQAAMVAALGD-DGHVAEQKARYAARRAQLKPALEKAGFRIDHSEAGLYLWATRGE----DAWDTVDRL-AE 319 (357)
T ss_pred cccCCCHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCccEEEEEECCC----CHHHHHHHH-Hh
Confidence 6788999999999999976 56788889999999999999999999888899999999998632 456777776 56
Q ss_pred cCeEEECCCCC
Q 013883 423 VGVVAIPTSVF 433 (434)
Q Consensus 423 ~GV~v~pG~~F 433 (434)
+||.|.||..|
T Consensus 320 ~gV~v~pg~~f 330 (357)
T TIGR03539 320 LGILVAPGDFY 330 (357)
T ss_pred CCEEECCcccc
Confidence 69999999866
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=359.60 Aligned_cols=314 Identities=27% Similarity=0.396 Sum_probs=259.2
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcC-----CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDG-----KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+.++++|+.|.|++++++.+.+++.+.+.+. ...|.|..|.++||+++++++.+. .++++ +|++|+|++++
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~---~~~~d-~I~it~Ga~~a 107 (402)
T TIGR03542 32 SADIIRLGIGDTTQPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRG---RIDPE-EIFISDGAKCD 107 (402)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc---CCCHH-HEEECCCcHHH
Confidence 3578999999999999999999998887652 256988899999999999986432 27787 89999999999
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCC-----------EEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecC
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYEATLSMAGA-----------KIKCITLRP-PDFAIPIEELKSTISKNTRAILMNT 250 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~-----------~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~ 250 (434)
+..+ ..++.+||+|++++|+|..|..+++..|+ +++.++.++ +++.+|++. .+++++|++++
T Consensus 108 l~~l-~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~i~l~n 181 (402)
T TIGR03542 108 VFRL-QSLFGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE-----EPKIDIIYLCS 181 (402)
T ss_pred HHHH-HHhcCCCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCccc-----cCCceEEEEeC
Confidence 9986 45668999999999999999999999999 999999864 345555422 14789999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeC
Q 013883 251 PHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP 329 (434)
Q Consensus 251 p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~ 329 (434)
||||||.+++.+++++|+++|++||++||+||+|.+|.+++. ..++..++...+++++++||||.||++|+|+||++++
T Consensus 182 P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~ 261 (402)
T TIGR03542 182 PNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVP 261 (402)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEEEEec
Confidence 999999999999999999999999999999999999987653 2344455444568999999999999999999999999
Q ss_pred hhhH--------HHHHHHhhccccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEE
Q 013883 330 PHLT--------WGVRQAHSFLTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFV 400 (434)
Q Consensus 330 ~~~~--------~~l~~~~~~~~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 400 (434)
++++ ..+.........+.+.+.|.++..+|.+. .+++++.+..++++++.+.+.|++.|+.+.++.+++|+
T Consensus 262 ~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~f~ 341 (402)
T TIGR03542 262 KELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAAGFKVYGGEHAPYL 341 (402)
T ss_pred HHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhcCceecCCCceeEE
Confidence 8876 22222222223467889999998888864 35677778899999999999999989888888899999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 401 VVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
|++++. +. ++.+++++|++++||.+.||+.|
T Consensus 342 ~v~l~~-~~-~~~~l~~~l~~~~gv~v~pg~~f 372 (402)
T TIGR03542 342 WVKTPE-GI-SSWDFFDFLLYQYHVVGTPGSGF 372 (402)
T ss_pred EEECCC-CC-CHHHHHHHHHHhCCEEEeCchhh
Confidence 999853 22 56789999988889999999877
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-45 Score=358.77 Aligned_cols=299 Identities=20% Similarity=0.315 Sum_probs=258.9
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
.+.|+|+.|.+++++++.+++++.+.+.+ ...|+ ..|.++||++++++++ ++++ +|++|+|+++++.+++.
T Consensus 29 ~~~i~l~~nen~~~~~~~v~~a~~~~~~~-~~~Yp-~~g~~~Lr~aia~~~~------~~~~-~I~vt~Gs~e~i~~~~~ 99 (366)
T PRK01533 29 HSFVKLASNENPFGCSPRVLDELQKSWLD-HALYP-DGGATTLRQTIANKLH------VKME-QVLCGSGLDEVIQIISR 99 (366)
T ss_pred CceEEeCCCCCCCCCCHHHHHHHHHHHHh-cCcCC-CCCHHHHHHHHHHHhC------CCcc-eEEECCCHHHHHHHHHH
Confidence 47899999999999999999998887655 34564 5688999999999985 6787 89999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
+++++||+|++++|+|+.|...+...|++++.++++ ++++|++.++++++++++++++++||||||.+++.+++++|+
T Consensus 100 ~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~--~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~l~ 177 (366)
T PRK01533 100 AVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN--NGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFI 177 (366)
T ss_pred HhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC--CCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHHHH
Confidence 999999999999999999999999999999999986 567999999999988999999999999999999999999999
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCc
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~ 348 (434)
++|++++ ++|+||+|.+|.+++...+........+++++++||||.||++|+|+||+++++++++.+++.+ ..++.+
T Consensus 178 ~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~~~--~~~~~~ 254 (366)
T PRK01533 178 EGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVR--LPFNVS 254 (366)
T ss_pred HhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHHhc--CCCCcC
Confidence 9998876 5677999998876543322222223457999999999999999999999999999999998765 358899
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 349 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
.+.|.++..+|++ .+|.++.++.++++++.+.+.++.+|+++.+++++ |+|+++. ++.++.+.|++ +||.|+
T Consensus 255 ~~~q~aa~~~l~~-~~~~~~~~~~~~~~r~~~~~~l~~~g~~~~~~~~n-f~~~~~~-----~~~~~~~~l~~-~GI~Vr 326 (366)
T PRK01533 255 SLAQKAATIAFGD-DEFIEEIVRVNTEGLRQYESFCKENEIPFYQSQTN-FIFLPVE-----NGGEIYEACAH-AGFIIR 326 (366)
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcCc-EEEEeCC-----CHHHHHHHHHH-CCcEEc
Confidence 9999999999976 67888888889999999999999899998888777 6777763 35678888865 699998
Q ss_pred C
Q 013883 429 P 429 (434)
Q Consensus 429 p 429 (434)
+
T Consensus 327 ~ 327 (366)
T PRK01533 327 P 327 (366)
T ss_pred c
Confidence 7
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-44 Score=329.22 Aligned_cols=322 Identities=24% Similarity=0.482 Sum_probs=285.4
Q ss_pred CeeEeCCCCCC----CCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 110 GAINLGQGFPN----FDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 110 ~~i~l~~g~p~----~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
.+|.|+.|.|. +++.+.+.+++.++++.+ .+.|+|..|+...|+++|+|+.+...-.++++ +|++|+|+++||+
T Consensus 62 ~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~-DV~ltsGC~qAIe 140 (447)
T KOG0259|consen 62 PILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTAD-DVVLTSGCSQAIE 140 (447)
T ss_pred eeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcC-ceEEeccchHHHH
Confidence 57999999775 667888999999999886 47899999999999999999988888889998 8999999999999
Q ss_pred HHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHH
Q 013883 185 ATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREE 263 (434)
Q Consensus 185 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~ 263 (434)
.++.++.+||..|++|.|+|+-|...+...|++++.+.+-+ .+|.+|++.+|.++.++|.+++++||+||.|.+++.+-
T Consensus 141 ~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~H 220 (447)
T KOG0259|consen 141 LAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDH 220 (447)
T ss_pred HHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHH
Confidence 99999999999999999999999999999999999999865 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeCh--------hhHH
Q 013883 264 LNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP--------HLTW 334 (434)
Q Consensus 264 l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~--------~~~~ 334 (434)
+++|+++|+++++.||.||+|.+++|++. +.++..+.. ---++.++++||.|=.||||+||++... .+++
T Consensus 221 L~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fss-iVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~q 299 (447)
T KOG0259|consen 221 LKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSS-IVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVVQ 299 (447)
T ss_pred HHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccc-cCceEeecccccccccCCceeeeEEEecccccccchHHHH
Confidence 99999999999999999999999999985 345555543 2357899999999999999999999742 3344
Q ss_pred HHHHHhhccccCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhC-CCE-eecCCeeEEEeeecCCC---C
Q 013883 335 GVRQAHSFLTFATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAV-GFK-VFPSSGTYFVVVDHTPF---G 408 (434)
Q Consensus 335 ~l~~~~~~~~~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~~~---~ 408 (434)
.+.+... .+.+++.+.|.|+-..|+. +++++++....++.+.+...+.|++. ++. ..+|+|.||+|+++.-. .
T Consensus 300 ~~~~~~~-~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s~~~~ 378 (447)
T KOG0259|consen 300 GIKNFLD-IIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLSLFPD 378 (447)
T ss_pred HHHHHHh-ccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccchhhhcc
Confidence 5555443 5678899999999999987 58899999999999999999999997 777 56899999999987543 4
Q ss_pred CCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 409 HETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 409 ~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
++++.+|+.+|.+|..|.+.||..|.
T Consensus 379 ~~dD~dFc~kL~~Eesv~~LPG~af~ 404 (447)
T KOG0259|consen 379 IEDDVDFCQKLAREESVICLPGQAFG 404 (447)
T ss_pred ccccHHHHHHHhhhcceEEecccccc
Confidence 66889999999999999999999884
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=353.28 Aligned_cols=314 Identities=26% Similarity=0.496 Sum_probs=267.7
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcC---CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDG---KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
.++++|+.|.|++++++.+.+++.+.+++. ...|.+..|.+++|+++++++++.++..++++ +|++|+|+++++..
T Consensus 33 ~~~~~l~~g~p~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~G~~~al~~ 111 (394)
T PRK06836 33 DNVFDFSLGNPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTAD-HIVMTCGAAGALNV 111 (394)
T ss_pred CCeEEecCcCCCCCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcC-cEEEeCChHHHHHH
Confidence 467999999999888889999888877643 46798989999999999999999889888898 89999999999999
Q ss_pred HHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHH
Q 013883 186 TILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 186 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
++..++++||.|++++|+|..+...++..|++++.++.+++++++|++.++++++++++++++++||||||.+++.++++
T Consensus 112 ~~~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~ 191 (394)
T PRK06836 112 ALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLK 191 (394)
T ss_pred HHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHH
Confidence 99999999999999999999999999999999999999876689999999999998999999999999999999999999
Q ss_pred HHHHHHHH------cCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHH----
Q 013883 266 VIASLCIE------NDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG---- 335 (434)
Q Consensus 266 ~i~~la~~------~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~---- 335 (434)
+|+++|++ ||++||+||+|.++.+++... ..+....+++++++||||.+|++|+|+||+++++++.+.
T Consensus 192 ~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~--~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~ 269 (394)
T PRK06836 192 ALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEV--PYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLV 269 (394)
T ss_pred HHHHHHHHhhhccCCCeEEEEeccccccccCCCCC--CChHHccCcEEEEecchhhccCcceeeEEEecCHHHhhhHHHH
Confidence 99999999 899999999999998865321 122223568999999999999999999999998776432
Q ss_pred --HHHHhhc-cccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCH
Q 013883 336 --VRQAHSF-LTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETD 412 (434)
Q Consensus 336 --l~~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (434)
+....+. ...+.+.+.|.++..++.+.. .+..++++++.+.+.|++.|+.+.+++||||+|+.++. .+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~r~~l~~~L~~~g~~~~~~~gg~~~~~~~~~---~~~ 341 (394)
T PRK06836 270 AALVFANRILGFVNAPALMQRVVAKCLDATV-----DVSIYKRNRDLLYDGLTELGFECVKPQGAFYLFPKSPE---EDD 341 (394)
T ss_pred HHHHHHhhccccccCCHHHHHHHHHHhCChH-----HHHHHHHHHHHHHHHHHhCCCEeecCCceEEEEEeCCC---CCH
Confidence 2112221 124678889999999998632 25678889999999999999999999999999998743 257
Q ss_pred HHHHHHHHHhcCeEEECCCCCC
Q 013883 413 IAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 413 ~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
.++++.| +++||.+.||+.|+
T Consensus 342 ~~~~~~l-~~~gv~v~~g~~f~ 362 (394)
T PRK06836 342 VAFCEKA-KKHNLLLVPGSGFG 362 (394)
T ss_pred HHHHHHH-HhCCEEEECchhcC
Confidence 7888766 55699999998874
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-44 Score=353.22 Aligned_cols=309 Identities=22% Similarity=0.323 Sum_probs=258.7
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcC--CCCCCCCCCcHHHHHHHHHHHHhhc--CCCCCCCCcEEEcCChHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDG--KNQYARGHGVPEFNSAIASRFKKDS--GLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~l~~~~--g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
..++|+.|.|++++++.+.+++.+++... ...|++ .|.++||+++++++++.+ |..++++ +|++|+|+++++..
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~G~~~Lr~aia~~~~~~~~~~~~v~~~-~I~it~Ga~~al~~ 106 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQGIESNRYPD-GGHEALKQAIAEYVNESAAGSSQITPA-NISVGNGSDELIRS 106 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhcccccCCCC-CchHHHHHHHHHHhCccccccCCCCHH-HEEEcCChHHHHHH
Confidence 57899999999999999999999887764 356865 699999999999998776 5778888 89999999999998
Q ss_pred HHHHccCCCC-eEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc----cCCcEEEecCCCCCcccCCC
Q 013883 186 TILGLINPGD-EVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS----KNTRAILMNTPHNPTGKMFT 260 (434)
Q Consensus 186 ~~~~l~~~gd-~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~----~~~~~i~~~~p~NPTG~~~~ 260 (434)
++.+++.+|| .|++++|+|..|...++..|++++.++++++++++|++.++++++ +++++|++++||||||.+++
T Consensus 107 ~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s 186 (374)
T PRK02610 107 LLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLT 186 (374)
T ss_pred HHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCC
Confidence 8888888886 899999999999999999999999999876568999999999886 47899999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHh
Q 013883 261 REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAH 340 (434)
Q Consensus 261 ~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~ 340 (434)
.+++++|++++ ++++||+||+|.+|.+. ..+..+. ..+++++++||||.+|++|+|+||+++++++++.+.+.+
T Consensus 187 ~~~l~~l~~~~--~~~~iI~De~Y~~~~~~---~~~~~~~-~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~~ 260 (374)
T PRK02610 187 AAELEWLRSLP--EDILVVIDEAYFEFSQT---TLVGELA-QHPNWVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVR 260 (374)
T ss_pred HHHHHHHHhcc--CCcEEEEeccccccCcc---chHHHHh-cCCCEEEEEecchhccCcccceeeeecCHHHHHHHHHhc
Confidence 99999999876 49999999999998542 1222222 246789999999999999999999999999999888766
Q ss_pred hccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHH
Q 013883 341 SFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYL 419 (434)
Q Consensus 341 ~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 419 (434)
..++.+.+.|.++..+|++.+.+.+.++..++ +++.+.+.|+++ ++.+ .+++++|+|++++. +. ++.+++++|
T Consensus 261 --~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~-~r~~l~~~L~~~~~~~~-~p~~g~f~~~~l~~-~~-~~~~~~~~l 334 (374)
T PRK02610 261 --LPYNLPSFSQLAAQLALEHRQELLAAIPEILQ-ERDRLYQALQELPQLRV-WPSAANFLYLRLSQ-DA-ALAALHQAL 334 (374)
T ss_pred --CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHHHHHHHhCCCcEe-CCCcceEEEEeCCC-CC-CHHHHHHHH
Confidence 35678899999999999876667776666555 477788888876 6765 46778899998853 22 567888877
Q ss_pred HHhcCeEEECCCCC
Q 013883 420 IKEVGVVAIPTSVF 433 (434)
Q Consensus 420 l~~~GV~v~pG~~F 433 (434)
+++||.|.++..|
T Consensus 335 -~~~gi~v~~~~~~ 347 (374)
T PRK02610 335 -KAQGTLVRHTGGG 347 (374)
T ss_pred -HHCCEEEEeCCCe
Confidence 4569999886543
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=361.64 Aligned_cols=320 Identities=33% Similarity=0.528 Sum_probs=273.3
Q ss_pred CeeEeCCCCCCCC----CcHHHHHHHHH--HHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 110 GAINLGQGFPNFD----GPDFVKDAAIQ--AIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 110 ~~i~l~~g~p~~~----~~~~v~~~~~~--~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
++|||+.|.+... +++.+.+++.+ ........|++..|.++||+++++++++..|..++++.+|++++|+.+++
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~ 81 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAAL 81 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHH
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccch
Confidence 6899999988776 33444444443 22345689999999999999999999988898888875799999999999
Q ss_pred HHHHHHc-cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhccc------CCcEEEecCCCCCc
Q 013883 184 AATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISK------NTRAILMNTPHNPT 255 (434)
Q Consensus 184 ~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~i~~~~p~NPT 255 (434)
..++..+ .++||+|++++|+|+.+...++..|++++.++++. .++.+|++.|++.+++ ++++|++++|||||
T Consensus 82 ~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPt 161 (363)
T PF00155_consen 82 FLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPT 161 (363)
T ss_dssp HHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTT
T ss_pred hhhhhcccccccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeeccccccc
Confidence 9999999 89999999999999999999999999999999863 5789999999999987 56899999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCC-ccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHH
Q 013883 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH-ISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTW 334 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~-~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~ 334 (434)
|.+++.+++++|+++|++||++||+||+|.++.++... ...........+++++.||||.||++|+|+||+++++++++
T Consensus 162 G~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~ 241 (363)
T PF00155_consen 162 GSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPPELIE 241 (363)
T ss_dssp TBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEEHHHHH
T ss_pred ccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeeccccccccccccccccchhhhhh
Confidence 99999999999999999999999999999999987542 12122223345699999999999999999999999999999
Q ss_pred HHHHHhhccccCCchHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCC
Q 013883 335 GVRQAHSFLTFATSTPMQWAATAALRAPE---TYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHET 411 (434)
Q Consensus 335 ~l~~~~~~~~~~~~~~~q~a~~~~L~~~~---~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (434)
.++........ +.+.|.++..+|.+.. +++++++++++++++.+.+.|++.|+.+.++++++|+|+++... +
T Consensus 242 ~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~---~ 316 (363)
T PF00155_consen 242 RLRRFQRSGLS--SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEIGITVLPPEAGFFLWVRLDPN---D 316 (363)
T ss_dssp HHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEHHSBSSEEEEEESHH---H
T ss_pred hhhhccccccc--cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhhhheeeccCccEEEEEcccc---h
Confidence 99887764444 8888989988888754 38899999999999999999999999999999999999987542 4
Q ss_pred HHHHHHHHHHhcCeEEECCCCCC
Q 013883 412 DIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 412 ~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+.+++++|++++||.+.||..|+
T Consensus 317 ~~~l~~~L~~~~gi~v~pg~~~~ 339 (363)
T PF00155_consen 317 AEELAQELLEEYGILVRPGSYFG 339 (363)
T ss_dssp HHHHHHHHHHHHTEEEEEGGGGT
T ss_pred HHHHHHHHHHhCCEEEEecCCCC
Confidence 67899999988899999999874
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=356.71 Aligned_cols=319 Identities=21% Similarity=0.312 Sum_probs=253.8
Q ss_pred cCCeeEeCCCCCCCCC--cHHHHHHHHHHHHcC-----CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH
Q 013883 108 KHGAINLGQGFPNFDG--PDFVKDAAIQAIRDG-----KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~--~~~v~~~~~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~ 180 (434)
.++.|+|+.|.|+..+ .+.+.+++.+.+.+. ...|++..|.++||+++++++.+.+|..++++ +|++|+|++
T Consensus 29 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~-~I~it~Ga~ 107 (416)
T PRK09440 29 TPGAIMLGGGNPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQ-NIALTNGSQ 107 (416)
T ss_pred CCCceeccCCCCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChh-hEEEccChH
Confidence 3578999999997544 246667776665442 25799999999999999999999999999998 899999999
Q ss_pred HHHHHHHHHccC-----CCCeEEE-cCCCchhHHHHHHHcCC----EEEEEEcCCC--CCCCCHHHHHhhcccCCcEEEe
Q 013883 181 EAIAATILGLIN-----PGDEVIL-FAPFYDSYEATLSMAGA----KIKCITLRPP--DFAIPIEELKSTISKNTRAILM 248 (434)
Q Consensus 181 ~ai~~~~~~l~~-----~gd~Vlv-~~p~y~~~~~~~~~~G~----~~~~v~~~~~--~~~~d~~~l~~~i~~~~~~i~~ 248 (434)
+++.+++.++++ +||.|++ ++|+|+.|...+...|. ....++++.+ ++++|++.++ +.++++++++
T Consensus 108 ~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~i~l 185 (416)
T PRK09440 108 SAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGAICV 185 (416)
T ss_pred HHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCCCceEEEE
Confidence 999999999985 6899999 79999999886654432 2222334332 3679999997 4567899999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEe
Q 013883 249 NTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA 328 (434)
Q Consensus 249 ~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~ 328 (434)
++||||||.+++.+++++|+++|++||++||+||+|..+.......... ....+++|+++||||. +++|+|+||+++
T Consensus 186 ~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~--~~~~~~vI~~~SfSK~-~~pGlRiG~~i~ 262 (416)
T PRK09440 186 SRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEAT--PLWNPNIILCMSLSKL-GLPGVRCGIVIA 262 (416)
T ss_pred ecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcC--ccccCCeEEEeccccc-CCCcceEEEEeC
Confidence 9999999999999999999999999999999999997643211111111 1125789999999995 899999999999
Q ss_pred ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCCh--HHHHH-HHHHHHHHHHHHHHHhhhC----CCEeecCCeeEEEe
Q 013883 329 PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPE--TYYEE-LKRDYSAKKAILVEGLNAV----GFKVFPSSGTYFVV 401 (434)
Q Consensus 329 ~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~--~~~~~-~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~ 401 (434)
++++++.+.........+++.+.|.++..+|++.+ ++..+ ++..|+++++.+++.|++. ++.+.+++|++|+|
T Consensus 263 ~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg~fiw 342 (416)
T PRK09440 263 DEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIFLW 342 (416)
T ss_pred CHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCCCceEEE
Confidence 99999999888877777889999999999998753 33333 5777888888888888653 46677899999999
Q ss_pred eecCCCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 402 VDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 402 ~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+++++.+. ++.++++.| +++||.++||+.|+
T Consensus 343 ~~~~~~~~-~~~~~~~~l-~~~gV~v~pg~~F~ 373 (416)
T PRK09440 343 LWFKDLPI-TTEELYQRL-KARGVLVVPGHYFF 373 (416)
T ss_pred EECCCCCC-CHHHHHHHH-HHCCEEEechHhhC
Confidence 99865333 467888876 55799999999884
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-44 Score=351.82 Aligned_cols=303 Identities=23% Similarity=0.359 Sum_probs=261.0
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.++|+.|.+.+++++.+.+++.+.+.. ..|.|..|.++||++++++++ ++++ +|++|+|+++++..++.+
T Consensus 30 ~~i~l~~n~~~~~~~~~v~~a~~~~~~~--~~~~p~~g~~~lr~~ia~~~~------~~~~-~i~~t~G~~~~l~~~~~~ 100 (359)
T PRK03158 30 KIVKLASNENPYGPSPKVKEAIAAHLDE--LALYPDGYAPELRTKVAKHLG------VDEE-QLLFGAGLDEVIQMISRA 100 (359)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHH--hhcCCCCcHHHHHHHHHHHhC------CCHH-HEEECCCHHHHHHHHHHH
Confidence 6799999988888888899988887754 345566799999999999985 6677 899999999999999999
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIAS 269 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~ 269 (434)
++++||.|++++|+|+.+...+...|++++.+|++ ++++|++.++++++++++++++++||||||.+++.+++.+|++
T Consensus 101 ~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~ 178 (359)
T PRK03158 101 LLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK--DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLE 178 (359)
T ss_pred HhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC--CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999997 5788999999999889999999999999999999999999888
Q ss_pred HHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCch
Q 013883 270 LCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATST 349 (434)
Q Consensus 270 la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~ 349 (434)
.|+ +|++||+||+|.++.+++............+++++++||||.||++|+|+||++++++++++++..+. .++.+.
T Consensus 179 ~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~--~~~~~~ 255 (359)
T PRK03158 179 SVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNIARP--PFNTTR 255 (359)
T ss_pred hCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCHHHHHHHHHhcC--CCCCCH
Confidence 774 69999999999998876533322222233578999999999999999999999999999999887664 478899
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 350 PMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 350 ~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
+.|.++..+|++ .+++++.++.++++++.+.+.|++.|+.+.+++ ++|+|+++.. ++.+++++|++ +||.+.|
T Consensus 256 ~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-g~~i~~~~~~----~~~~~~~~l~~-~gv~v~~ 328 (359)
T PRK03158 256 IAQYAAIAALED-QAFLKECVEKNAEGLEQYYAFCKEYGLFYYPSQ-TNFIFVDTGR----DANELFEALLK-KGYIVRS 328 (359)
T ss_pred HHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHCCCeeCCCc-CcEEEEECCC----CHHHHHHHHHH-CCeEEee
Confidence 999999999986 568888888899999999999998888887655 5688888631 47789998875 5999999
Q ss_pred CCCC
Q 013883 430 TSVF 433 (434)
Q Consensus 430 G~~F 433 (434)
|+.|
T Consensus 329 g~~f 332 (359)
T PRK03158 329 GAAL 332 (359)
T ss_pred CCCC
Confidence 9887
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=347.06 Aligned_cols=302 Identities=22% Similarity=0.383 Sum_probs=257.2
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.+||+.|.|..++++.+.+++.+.+.. ...|++. +.++||++++++++ ++++ +|++|+|+++++..++.+
T Consensus 20 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~-~~~Y~~~-~~~~lr~~ia~~~~------~~~~-~i~it~Ga~~~l~~~~~~ 90 (354)
T PRK06358 20 MILDFSANINPLGVPESLKQAITENLDK-LVEYPDP-DYLELRKRIASFEQ------LDLE-NVILGNGATELIFNIVKV 90 (354)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHh-hhcCCCc-cHHHHHHHHHHHhC------CChh-hEEECCCHHHHHHHHHHH
Confidence 4799999988888888999988887653 4668764 68899999999984 7788 899999999999999988
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
+ .+ ++|++++|+|+.|...++..|++++.+++++ .++.+| +.+++.+.++++++++++||||||.+++.+++++|+
T Consensus 91 ~-~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~l~ 167 (354)
T PRK06358 91 T-KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKIL 167 (354)
T ss_pred h-CC-CcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHHHHHHHH
Confidence 6 44 6899999999999999999999999999975 357889 666666777899999999999999999999999999
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC-hhhHHHHHHHhhccccCC
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLTFAT 347 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~~~~~ 347 (434)
++|++||++||+||+|.+|.+++...+........+++++++||||.+|++|+|+||++++ +.+++.+...+. .++.
T Consensus 168 ~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~--~~~~ 245 (354)
T PRK06358 168 DKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMRE--PWSI 245 (354)
T ss_pred HHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCC--CCcc
Confidence 9999999999999999999887644333223334579999999999999999999999985 678888877654 5778
Q ss_pred chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 348 STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 348 ~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
+.+.|.++..+|++ .+++++.++.++++++.+.+.|++. |+.+.+++|+ |+|+++++ ..+++++|++ +||.
T Consensus 246 ~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~-f~~~~~~~-----~~~~~~~l~~-~gI~ 317 (354)
T PRK06358 246 NTFADLAGQTLLDD-KEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVN-FIFFKLEK-----PIDLRKELLK-KGIL 317 (354)
T ss_pred hHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcce-EEEEEcCc-----hHHHHHHHHH-CCeE
Confidence 89999999999975 5678889999999999999999987 7888888777 67887742 4688888876 5999
Q ss_pred EECCCCC
Q 013883 427 AIPTSVF 433 (434)
Q Consensus 427 v~pG~~F 433 (434)
+.||+.|
T Consensus 318 v~~~~~f 324 (354)
T PRK06358 318 IRSCSNY 324 (354)
T ss_pred EEECCCC
Confidence 9999887
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=370.79 Aligned_cols=320 Identities=16% Similarity=0.230 Sum_probs=263.9
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
++++|+|+.|.|++++|+.+++++.+++.+.. + ..|.+++++++++++.+.+|++.+++++|++++|+++++..++
T Consensus 696 g~~vI~LsinE~d~ppPp~V~eAi~eal~~~~--~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll 771 (1082)
T PLN02672 696 ESSLIHMDVDESFLPVPSAVKASIFESFVRQN--I--SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLV 771 (1082)
T ss_pred CCCEEEEeCCCCCCCCCHHHHHHHHHHHhhcC--C--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHH
Confidence 45789999999999999999999988775432 2 3467889999999999999998876558999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhccc-CCcEEEecCCC-CCcccCCCHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISK-NTRAILMNTPH-NPTGKMFTREEL 264 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~-~~~~i~~~~p~-NPTG~~~~~e~l 264 (434)
.++++|||+|+++.|+|+.|...++..|++++.+|+++ +++.+|++.+++++++ +.++|++++|| ||||.+++.+++
T Consensus 772 ~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeL 851 (1082)
T PLN02672 772 LCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEI 851 (1082)
T ss_pred HHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHH
Confidence 99999999999999999999999999999999999974 4689999999999976 45689999996 999999999999
Q ss_pred HHHHHHHHHcCcEEEEcCcCCccccCCCCc---ccc----CCCC--CCCceEEEccCChhhccccceeeeEEeCh-hhHH
Q 013883 265 NVIASLCIENDVLVFSDEVYDKLAFEMDHI---SIA----SLPG--MYERTVTMNSLGKTFSLTGWKIGWAIAPP-HLTW 334 (434)
Q Consensus 265 ~~i~~la~~~~~~iI~Deay~~~~~~~~~~---~~~----~~~~--~~~~~i~i~S~SK~~g~~G~R~G~~~~~~-~~~~ 334 (434)
++|+++|++||++||+||+|.++.|++... ++. .+.. ..+++++++||||.++++|+|+||+++++ ++++
T Consensus 852 e~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~ 931 (1082)
T PLN02672 852 EEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLID 931 (1082)
T ss_pred HHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHH
Confidence 999999999999999999999999875431 111 1111 12479999999999999999999999975 4888
Q ss_pred HHHHHhhccccCCchHHHHHHHHHH---hC-C---hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCC
Q 013883 335 GVRQAHSFLTFATSTPMQWAATAAL---RA-P---ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPF 407 (434)
Q Consensus 335 ~l~~~~~~~~~~~~~~~q~a~~~~L---~~-~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 407 (434)
.++..... ..+....|.++..++ .+ . .+++++.++.++++++.+.+.|++.|+.+.+++||||+|+++..+
T Consensus 932 ~l~~~~~~--s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~Gi~v~~PeGGFfLwl~l~~~ 1009 (1082)
T PLN02672 932 AFHSAPGL--SRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEACGWDVLEPQGGISMVAKPSAY 1009 (1082)
T ss_pred HHHHhhhh--cCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeEecCCcEEEEEEEcccc
Confidence 88765432 222333444444433 21 2 345777888899999999999999999999999999999976421
Q ss_pred C---------------CCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 408 G---------------HETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 408 ~---------------~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
. ..++.+++++|++++||.+.||+.|
T Consensus 1010 l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~F 1050 (1082)
T PLN02672 1010 LGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWT 1050 (1082)
T ss_pred ccccccccccccccccCCCHHHHHHHHHHcCCEEEecCccc
Confidence 0 1257889999999899999999876
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=346.77 Aligned_cols=305 Identities=23% Similarity=0.360 Sum_probs=259.1
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
.++|+|+.|.|.+.+++.+.+++.+.... ...|++..| .+||++++++++ ++++ +|++|+|+++++..++.
T Consensus 36 ~~~i~l~~~~~~~~~~~~~~~al~~~~~~-~~~Y~~~~g-~~lr~~ia~~~~------~~~~-~i~~t~G~~~~l~~~~~ 106 (371)
T PRK05166 36 PRIAKLGSNENPLGPSPAVRRAFADIAEL-LRLYPDPQG-RALREAIAARTG------VPAD-RIILGNGSEDLIAVICR 106 (371)
T ss_pred cceEEcCCCCCCCCCCHHHHHHHHHHHHH-hhcCCCCcH-HHHHHHHHHHhC------cCHH-HEEEcCCHHHHHHHHHH
Confidence 37899999988888888888888765443 567999888 499999999874 5677 89999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
+++++||+|++++|+|+.+...++..|++++.+++++ ++++|++.++++++++++++++++||||||.+++.+++++|+
T Consensus 107 ~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~ 185 (371)
T PRK05166 107 AVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTP-DLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVL 185 (371)
T ss_pred HhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCC-CCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999875 678999999999988999999999999999999999999999
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccC-CCCCCCceEEEccCChhhccccceeeeEEe-ChhhHHHHHHHhhccccC
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIAS-LPGMYERTVTMNSLGKTFSLTGWKIGWAIA-PPHLTWGVRQAHSFLTFA 346 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~-~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~-~~~~~~~l~~~~~~~~~~ 346 (434)
++|++ +++||+||+|.+|.+++...+... +....+++++++||||.||++|+|+||+++ ++++++.+++.+. .++
T Consensus 186 ~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~--~~~ 262 (371)
T PRK05166 186 DATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRT--PFN 262 (371)
T ss_pred HhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhcc--CCC
Confidence 99874 889999999999986544433322 223346899999999999999999999876 6788888876553 567
Q ss_pred CchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 347 TSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
.+.+.|.++..+|.+ .+++++.++.++++++.+.+.|++.|+.+.+ .+++|+|+++.. ++.++++.|+++ ||.
T Consensus 263 ~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~p-~~g~fl~~~~~~----~~~~l~~~l~~~-gi~ 335 (371)
T PRK05166 263 VNGAAQAAALAALDD-EEHLAKGVALALAERERLKKELAEMGYRIAP-SRANFLFFDARR----PASAVAEALLRQ-GVI 335 (371)
T ss_pred CCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHCcCeeCC-CcCCEEEEeCCC----CHHHHHHHHHHC-CeE
Confidence 888999888888876 5688988999999999999999999988655 456688988632 477899988765 999
Q ss_pred EECCCCC
Q 013883 427 AIPTSVF 433 (434)
Q Consensus 427 v~pG~~F 433 (434)
+.||..|
T Consensus 336 v~p~~~~ 342 (371)
T PRK05166 336 VKPWKQP 342 (371)
T ss_pred EecCCCC
Confidence 9999754
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=347.10 Aligned_cols=305 Identities=20% Similarity=0.310 Sum_probs=260.6
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHc---CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRD---GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
..|+|+.|.|++++++.+.+++.+++.+ ....|++ .|.++||+++++++.+.+|..++++ +|++|+|+++++.++
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~~Y~~-~g~~~lr~aia~~~~~~~~~~~~~~-~I~it~G~~~~l~~~ 104 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEAVAEAAAGLNRYPD-RDAVALRADLAAYLTAQTGVGLTVE-NVWAANGSNEILQQL 104 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhhhhhhccCCC-CchHHHHHHHHHHhhhhccCCCChh-hEEECCCHHHHHHHH
Confidence 4689999999999999999999988754 3467865 5889999999999999999999998 899999999999999
Q ss_pred HHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHH
Q 013883 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 187 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
+++++++||.|+++.|+|..|...+...|.+++.++.++ ++++|++.+++++++ ++++|++++||||||.+++.++++
T Consensus 105 ~~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~ 183 (368)
T PRK03317 105 LQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPRAA-DFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVE 183 (368)
T ss_pred HHHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEcccCC-CCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHH
Confidence 999999999999999999999999999999998887753 689999999999874 789999999999999999999988
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcccc
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTF 345 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~ 345 (434)
+|+++| +++||+||+|.+|.+++.. ....+....+++++++||||.+|++|+|+||+++++++++.++..+ ..+
T Consensus 184 ~l~~~~---~~~lI~DE~y~~~~~~~~~-~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~~~--~~~ 257 (368)
T PRK03317 184 AILDAA---PGIVVVDEAYAEFRRSGTP-SALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRLVR--LPY 257 (368)
T ss_pred HHHHHC---CceEEEeCCchhhcccCCc-CHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHHHHHHHhcC--CCC
Confidence 888776 6999999999998766532 2222222245899999999999999999999999999999887665 367
Q ss_pred CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCe
Q 013883 346 ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGV 425 (434)
Q Consensus 346 ~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV 425 (434)
+.+.+.|.++..+|++.+ ++.+.+++++++++.+.+.|++.|+.+.+++++|++|.++. +..++.+.|++ +||
T Consensus 258 ~~s~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~-~Gv 330 (368)
T PRK03317 258 HLSAVTQAAARAALRHAD-ELLASVAALRAERDRVVAWLRELGLRVAPSDANFVLFGRFA-----DRHAVWQGLLD-RGV 330 (368)
T ss_pred CCCHHHHHHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHHCCCEeCCCCCcEEEEeccC-----CHHHHHHHHHH-CCE
Confidence 888999999999998744 34455677889999999999999999888999999886652 46678877765 599
Q ss_pred EEECC
Q 013883 426 VAIPT 430 (434)
Q Consensus 426 ~v~pG 430 (434)
.+.++
T Consensus 331 ~v~~~ 335 (368)
T PRK03317 331 LIRDV 335 (368)
T ss_pred EEEeC
Confidence 99885
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-43 Score=343.74 Aligned_cols=301 Identities=23% Similarity=0.338 Sum_probs=250.1
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.|+|+.|.+.+++++.+.+++.+.+.. ...|++.. ..+||++++++++ ++++ +|++|+|+++++.+++++
T Consensus 23 ~~i~l~~~~n~~~~~~~~~~a~~~~~~~-~~~Y~~~~-~~~Lr~aia~~~~------v~~~-~I~it~G~~~~i~~~~~~ 93 (360)
T PRK07392 23 AILDFSASINPLGPPESVIAAIQSALSA-LRHYPDPD-YRELRLALAQHHQ------LPPE-WILPGNGAAELLTWAGRE 93 (360)
T ss_pred cEEEeCCcCCCCCCCHHHHHHHHHHHHH-hhcCCCcC-HHHHHHHHHHHhC------cChh-hEEECCCHHHHHHHHHHH
Confidence 6799999988899999999988877764 56798764 5899999999983 7787 899999999999999988
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCC----CCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDF----AIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~----~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
+. +||.|++++|+|..|...++..|++++.+++++++. ..+++.+++.. ++++++++++||||||.+++.+++
T Consensus 94 l~-~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~~~~~l- 170 (360)
T PRK07392 94 LA-QLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLWSREAI- 170 (360)
T ss_pred hC-CCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCcCHHHH-
Confidence 65 689999999999999999999999999999975332 25677776654 468999999999999999997765
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcccc
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTF 345 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~ 345 (434)
.++++++++ +|+||+|.+|.+++...++.......+++++++||||.||++|+|+||+++++++++.+...+ ..+
T Consensus 171 --~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~~~~~--~~~ 245 (360)
T PRK07392 171 --LPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRWQQWR--DPW 245 (360)
T ss_pred --HHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHHHHHHHhhC--CCC
Confidence 555667885 666999999987654333333333457899999999999999999999999999998887654 347
Q ss_pred CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcC
Q 013883 346 ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVG 424 (434)
Q Consensus 346 ~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~G 424 (434)
+++.+.|.++..+|++ .++.+++++.++++++.+.+.|+++ |+.+.+ ++++|+|+++.. ++.++++++++++|
T Consensus 246 ~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~~~~fl~~~~~~----~~~~l~~~ll~~~g 319 (360)
T PRK07392 246 PVNGLAAAAAIAALAD-RDFQQQTWAWLPPAREALFQGLASLPGLTPLP-SAANFLLVQSQG----SALQLQEKLLQQHR 319 (360)
T ss_pred CCCHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECC-CCCCEEEEEcCC----CHHHHHHHHHhhCC
Confidence 8899999999999986 5678888888999999999999886 787755 677889988642 47789988888889
Q ss_pred eEEECCCCC
Q 013883 425 VVAIPTSVF 433 (434)
Q Consensus 425 V~v~pG~~F 433 (434)
|.+.||..|
T Consensus 320 v~v~pg~~f 328 (360)
T PRK07392 320 ILIRDCLSF 328 (360)
T ss_pred EEEEeCCCC
Confidence 999999987
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=344.38 Aligned_cols=298 Identities=21% Similarity=0.339 Sum_probs=253.6
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
++|+|+.|.+++++++.+.+++.+++.. ...|++ .|.++||++++++++ ++++ +|++|+|+++++.+++++
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~-~~~~~lr~~ia~~~~------~~~~-~I~it~G~~~al~~~~~~ 101 (357)
T PRK14809 31 DLVKLSSNENPHGPSPAAVEAIREAAER-VHSYPK-ASHADLTAALADRWD------VSPE-QVWLANGGDGALDYLARA 101 (357)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhh-hhcCCC-CCHHHHHHHHHHHhC------CCcc-eEEECCCHHHHHHHHHHH
Confidence 7899999999999999999988887653 567865 688999999999984 7788 899999999999999999
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
++++||.|++++|+|..|...+...|++++.++++. +++.+|++.+++.. +++++|++++||||||.+++.+++++|+
T Consensus 102 ~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s~~~~~~l~ 180 (357)
T PRK14809 102 MLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIPLDEVEALA 180 (357)
T ss_pred hcCCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCCHHHHHHHH
Confidence 999999999999999999998999999999999875 45788888887765 4689999999999999999999999999
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCc
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~ 348 (434)
++|++ +++||+||+|.+|.+++. .+..+ ...+++++++||||.||++|+|+||+++++++++.+.+.. ..++.+
T Consensus 181 ~~~~~-~~~iI~De~y~~~~~~~~--~~~~~-~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~--~~~~~~ 254 (357)
T PRK14809 181 ERTDE-ETLVVVDEAYGEFAERPS--AVALV-EERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARVN--TPFAAS 254 (357)
T ss_pred HhCcc-CcEEEEechhhhccCCch--hHHHH-hhCCCEEEEecchhHhcCcchhheeeecCHHHHHHHHHhC--CCCCCC
Confidence 99875 789999999999876432 12222 2357899999999999999999999999999999887764 357788
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 349 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
.+.|.++..+|.+ ++++++.++.++++++.+.+.|+..++ +.+++|+|+++. +..++++.| +++||.|.
T Consensus 255 ~~~~~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~----~~~g~f~~~~~~-----~~~~~~~~l-~~~gv~v~ 323 (357)
T PRK14809 255 ELACRAGLAALDD-DEHVERTVETARWAREYIREELDAPTW----ESAGNFVLAEVG-----DASAVAEAA-QERGVIVR 323 (357)
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHhcCccC----CCCCCEEEEECC-----CHHHHHHHH-HHCCEEEE
Confidence 8999999999976 678999999999999999999976433 356778888763 467888876 55699999
Q ss_pred CCCCCC
Q 013883 429 PTSVFY 434 (434)
Q Consensus 429 pG~~F~ 434 (434)
||+.|.
T Consensus 324 ~g~~f~ 329 (357)
T PRK14809 324 DCTSFG 329 (357)
T ss_pred ECccCC
Confidence 999873
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=345.00 Aligned_cols=294 Identities=20% Similarity=0.299 Sum_probs=253.3
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
++.++|+.|.|++++++.+.+++.+++.. ...|++.. ..+||++++++++ ++++ +|++|+|+++++.+++.
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~~~Y~~~~-~~~Lr~aia~~~~------v~~e-~I~it~Gs~~ai~~~~~ 113 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSAAL-SGRYDLEL-EDDLRTLFAAQEG------LPAD-HVMAYAGSSEPLNYAVL 113 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHHHH-hcCCCCch-HHHHHHHHHHHhC------cChh-hEEEcCChHHHHHHHHH
Confidence 37899999999999999999999887654 34687764 8899999999774 6788 89999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
+++++||+|++++|+|+.|...++..|++++.+++++ ++.+|++.+++. .++++++++++||||||.+++.+++++|+
T Consensus 114 ~l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~~l~ 191 (370)
T PRK09105 114 AFTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRA-DGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIEWLL 191 (370)
T ss_pred HHcCCCCEEEEeCCChHHHHHHHHHcCCeEEEecCCC-CCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHHHHH
Confidence 9999999999999999999999999999999999875 688999999887 46789999999999999999999999999
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCc
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~ 348 (434)
+.+ +++++||+||+|.+|... .+...+....+++++++||||.||++|+|+||+++++++++.+... ..+..+
T Consensus 192 ~~~-~~~~~lIvDEaY~~f~~~---~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~---~~~~~~ 264 (370)
T PRK09105 192 ANK-PAGSVLLVDEAYIHFSDA---PSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARF---GHNPLP 264 (370)
T ss_pred HhC-CCCcEEEEECchHHhccC---cchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHHHHHhc---CCCCcC
Confidence 875 469999999999876432 2333343446789999999999999999999999999999888765 245578
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEE
Q 013883 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVA 427 (434)
Q Consensus 349 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v 427 (434)
.+.|.++..+|.+ .+|+++.++.++++++.+.+.|+++|+.+.+++++||+ +++. .+..+++++|+++ ||.+
T Consensus 265 ~~~~~aa~~~L~~-~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~f~~-~~~~----~~~~~l~~~L~~~-gI~v 336 (370)
T PRK09105 265 VPAAAAGLASLRD-PKLVPQRRAENAAVREDTIAWLKKKGYKCTPSQANCFM-VDVK----RPAKAVADAMAKQ-GVFI 336 (370)
T ss_pred HHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCcEEE-EeCC----CCHHHHHHHHHHC-CcEE
Confidence 8889999999986 67899999999999999999999999998899999875 6653 1577899999866 9998
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=341.05 Aligned_cols=300 Identities=21% Similarity=0.351 Sum_probs=252.9
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
.++|+|+.|.+++++++.+.+++... . ....|++. +..+||++++++++ ++++ +|++|+|+++++..++.
T Consensus 52 ~~~i~l~~n~~p~~~~~~v~~a~~~~-~-~~~~Yp~~-~~~~lr~~ia~~~~------~~~~-~I~~t~Ga~~~i~~~~~ 121 (380)
T PLN03026 52 EDIVKLDANENPYGPPPEVLEALGNM-K-FPYVYPDP-ESRRLRAALAEDSG------LESE-NILVGCGADELIDLLMR 121 (380)
T ss_pred cceEEccCCCCCCCCCHHHHHHHHhh-H-hhccCCCC-CHHHHHHHHHHHhC------cChh-hEEEcCCHHHHHHHHHH
Confidence 47899999998898888888877542 1 23457664 67899999999986 6777 89999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhc-ccCCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTI-SKNTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i-~~~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
+++++||+|++++|+|..|...++..|++++.++.++ ++++|++.+++++ .+++++|++++||||||.+++.+++++|
T Consensus 122 ~~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l 200 (380)
T PLN03026 122 CVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTP-DFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKI 200 (380)
T ss_pred HhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCC-CCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999864 6889999999998 6789999999999999999999998888
Q ss_pred HHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCC
Q 013883 268 ASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT 347 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~ 347 (434)
++.+ ++||+||+|.+|.+++.. . ......+++++++||||.||++|+|+||+++++++++.+.+.+. .++.
T Consensus 201 ~~~~----~~vi~DeaY~~~~~~~~~--~-~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~~l~~~~~--~~~~ 271 (380)
T PLN03026 201 LELP----ILVVLDEAYIEFSTQESR--M-KWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQ--PYNV 271 (380)
T ss_pred HhcC----CEEEEECcchhhcCCcch--H-HHHHhCCCEEEEecchHhhcCccccceeeecCHHHHHHHHHhcC--CCCC
Confidence 8653 899999999998764322 1 12224579999999999999999999999999999998887764 4778
Q ss_pred chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEE
Q 013883 348 STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVA 427 (434)
Q Consensus 348 ~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v 427 (434)
+.+.|.++..+|++ .++++++++.++++|+.+.+.|+++++....+++++|+|+++.+ + .++.+++++|+ ++||.|
T Consensus 272 ~~~~q~aa~~aL~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~~~f~~~~~~~-~-~~~~~~~~~l~-~~gI~v 347 (380)
T PLN03026 272 SVAAEVAACAALSN-PKYLEDVKNALVEERERLFGLLKEVPFLEPYPSDANFILCRVTS-G-RDAKKLKEDLA-KMGVMV 347 (380)
T ss_pred CHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCeECCCCCeEEEEECCC-C-CCHHHHHHHHH-HCCeEE
Confidence 89999999999986 57889999999999999999999986433356677788888743 2 24678988887 569999
Q ss_pred ECCCC
Q 013883 428 IPTSV 432 (434)
Q Consensus 428 ~pG~~ 432 (434)
++|+.
T Consensus 348 ~~~~~ 352 (380)
T PLN03026 348 RHYNS 352 (380)
T ss_pred EECCC
Confidence 99854
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=335.92 Aligned_cols=301 Identities=18% Similarity=0.323 Sum_probs=250.5
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
++++|+.|.+++++|+.+.+++.+.+.. ...|++. +..+||++++++++ ++++ +|++|+|+++++..++..
T Consensus 21 ~~i~l~~~~~~~~~p~~~~~a~~~~~~~-~~~y~~~-~~~~lr~~ia~~~~------~~~~-~i~it~Ga~~~l~~~~~~ 91 (356)
T PRK08056 21 QLLDFSANINPLGMPVSLKRAIIDNLDC-AERYPDV-EYRHLHQALARHHQ------VPAS-WILAGNGETESIFAVVSG 91 (356)
T ss_pred hEEEeccccCCCCCCHHHHHHHHHHHHh-cccCcCc-cHHHHHHHHHHHhC------cChh-hEEECCCHHHHHHHHHHH
Confidence 6799999999999999999999887764 3468764 68999999999985 6787 899999999999999887
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
+ .+|| +++++|+|..|...++..|++++.+|+++ .++.+| +.+++.+.+++++|++++||||||.+++.+++++|+
T Consensus 92 l-~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~~~k~v~l~~p~NPTG~~~~~~~~~~i~ 168 (356)
T PRK08056 92 L-KPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIA 168 (356)
T ss_pred h-CCCC-EEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhccCCCCEEEEeCCcCCCCCCCCHHHHHHHH
Confidence 6 6775 78889999999999999999999999975 346666 455566778899999999999999999999999999
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC-hhhHHHHHHHhhccccCC
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLTFAT 347 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~~~~~ 347 (434)
++|++|+++||+||+|.+|.+++.. .+..+. ..+++++++||||.||++|+|+||++++ +++++.+++.. ..++.
T Consensus 169 ~~a~~~~~~ii~De~y~~~~~~~~~-~~~~~~-~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~--~~~~~ 244 (356)
T PRK08056 169 ERCKSLNIALILDEAFIDFIPDETG-FIPQLA-DNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQ--MPWSI 244 (356)
T ss_pred HHHHhcCCEEEEecchhccCCcchH-HHHHhc-cCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhC--CCCch
Confidence 9999999999999999998865421 111122 2468999999999999999999999984 67777776543 35677
Q ss_pred chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 348 STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 348 ~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
+.+.|.++..+|++ .+|.+++++.++++++.+.+.|+++ |+.+.+++ ++|+|+++.. ++.+++++|++ +||.
T Consensus 245 ~~~~~~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~l~~-~gI~ 317 (356)
T PRK08056 245 NAFAALAGEVILQD-RAYQQATWQWLAEEGARFYQALCALPLLTVWPGR-ANYLFLRCER----PDIDLQRALLT-QRIL 317 (356)
T ss_pred hHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCC-CcEEEEEcCC----ChHHHHHHHHH-CCeE
Confidence 88889888888864 6688888999999999999999887 78776664 6678888742 35688888875 6999
Q ss_pred EECCCCC
Q 013883 427 AIPTSVF 433 (434)
Q Consensus 427 v~pG~~F 433 (434)
|.||+.|
T Consensus 318 v~~~~~f 324 (356)
T PRK08056 318 IRSCANY 324 (356)
T ss_pred EEECCCC
Confidence 9999987
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=333.47 Aligned_cols=299 Identities=31% Similarity=0.492 Sum_probs=263.3
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.++|+.+...+++++.+.+++.+.+. ..+.|++. ...+|+++++++++. ++++ +|++++|++++|..++++
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~~~-~~~rYPd~-~~~~l~~a~a~~~~~-----~~~~-~V~~gnGsde~i~~l~~~ 94 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAALD-KLNRYPDP-DYRELRAALAEYYGV-----VDPE-NVLVGNGSDELIELLVRA 94 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHHHH-hhccCCCC-cHHHHHHHHHHHhCC-----CCcc-eEEEcCChHHHHHHHHHH
Confidence 579999998889999999998888776 46789988 568999999999873 5566 899999999999999999
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIAS 269 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~ 269 (434)
++.+||+|+++.|+|..|...++..|++++.++..+ +.+|++.+.+++.+++++|++||||||||..++.++++++++
T Consensus 95 ~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~--~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~ 172 (356)
T COG0079 95 FVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE--FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLE 172 (356)
T ss_pred hhcCCCEEEEcCCChHHHHHHHHhcCCeEEEecccc--cccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999985 999999999999989999999999999999999999999999
Q ss_pred HHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCch
Q 013883 270 LCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATST 349 (434)
Q Consensus 270 la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~ 349 (434)
.+.+ +.+||+||||.+|.. .+...+...++|++++.||||.||++|+|+||+++++++++.+++++. .|+.+.
T Consensus 173 ~~~~-~~~vVvDEAY~eF~~----~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr~--p~~v~~ 245 (356)
T COG0079 173 ALPE-GGLVVIDEAYIEFSP----ESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRP--PFNVSS 245 (356)
T ss_pred hCCC-CcEEEEeCchhhcCC----chhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHHHHHHHHHhcC--CCCCCH
Confidence 8888 999999999999864 222222225678999999999999999999999999999999999874 789999
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCE-eecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 350 PMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFK-VFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 350 ~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
+++.++.++|++. +++++.++.+.+.|+++.+.|+++|+. +.+++++ |+++++.. .. ...+.++|+++ ||.++
T Consensus 246 ~a~~aa~aal~~~-~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~aN-Fvlv~~~~--~~-~~~l~~~L~~~-giivR 319 (356)
T COG0079 246 PALAAAIAALRDA-DYLEESVERIREERERLYAALKALGLFGVFPSQAN-FVLVRVPD--AE-AAALAEALLKK-GILVR 319 (356)
T ss_pred HHHHHHHHHcccH-HHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCc-EEEEECCC--cc-HHHHHHHHHHC-CEEEE
Confidence 9999999999985 789999999999999999999999855 7777766 66777643 22 55788888765 99999
Q ss_pred CCC
Q 013883 429 PTS 431 (434)
Q Consensus 429 pG~ 431 (434)
...
T Consensus 320 ~~~ 322 (356)
T COG0079 320 DCS 322 (356)
T ss_pred eCC
Confidence 875
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=336.91 Aligned_cols=300 Identities=21% Similarity=0.349 Sum_probs=253.8
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHc-CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRD-GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
.++|+|+.|.|++++++.+.+++.+++.. ....|++ .|..+||++++++++ ++++++|++|+|+++++..++
T Consensus 26 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~------~~~~~~I~~t~G~~~~i~~~~ 98 (356)
T PRK04870 26 TGMVKLDAMENPYRLPAELRAELGERLAEVALNRYPD-PRAAALKAALRAAMG------VPAGADVLLGNGSDELIQLLA 98 (356)
T ss_pred CCceeCcCCCCCCCCCHHHHHHHHHHhhccccccCCC-CCHHHHHHHHHHHhC------cCCCCcEEEcCCHHHHHHHHH
Confidence 47899999999999999999999988865 3567887 578999999999986 333237999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
.+++++||+|++++|+|..|...++..|++++.+++++ ++++|++.+++++.. ++++|++++||||||.+++.+++++
T Consensus 99 ~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~-~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~ 177 (356)
T PRK04870 99 LACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTA-DFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVER 177 (356)
T ss_pred HHhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCC-CCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999974 689999999999864 8999999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccC
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA 346 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~ 346 (434)
|+++| ++++|+||+|.+|.+.. .. ..+ ...+++++++|||| ++++|+|+||+++++++++.++..+ ..++
T Consensus 178 i~~~~---~~~ii~De~y~~~~~~~-~~--~~~-~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~--~~~~ 247 (356)
T PRK04870 178 IIEAA---PGLVVVDEAYQPFAGDS-WL--PRL-ARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVR--PPYN 247 (356)
T ss_pred HHHHC---CCEEEEECCchhhcCcc-hH--HHH-hhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHHHHcc--CCCc
Confidence 99988 77899999999876431 11 112 23468999999999 8999999999999999998887765 3467
Q ss_pred CchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCe
Q 013883 347 TSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGV 425 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV 425 (434)
.+.+.|.++..+|++ .+++++.+++++++++.+.+.|+++ |+.+.+ .+++|+|+++. ++.++++.| +++||
T Consensus 248 ~~~~~q~~a~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~l-~~~gI 319 (356)
T PRK04870 248 VNVLTQATALFALEH-VDVLDAQAAQLRAERTRLAAALAALPGVTVFP-SAANFILVRVP-----DAAAVFDGL-KTRGV 319 (356)
T ss_pred CCHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECC-CCCeEEEEECC-----CHHHHHHHH-HHCCE
Confidence 888999998888886 4567888899999999999999987 887655 45568888763 356777666 56799
Q ss_pred EEECCCCCC
Q 013883 426 VAIPTSVFY 434 (434)
Q Consensus 426 ~v~pG~~F~ 434 (434)
.|.||+.|+
T Consensus 320 ~v~~~~~f~ 328 (356)
T PRK04870 320 LVKNLSGMH 328 (356)
T ss_pred EEEECCCCC
Confidence 999998873
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=336.84 Aligned_cols=301 Identities=20% Similarity=0.267 Sum_probs=255.5
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
..++|+.|.+++++++.+.+++.+.... ...|++. +..+||++++++++ ++++ +|++|+|+++++..++..
T Consensus 33 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~-~~~Y~~~-~~~~Lr~~ia~~~~------~~~~-~I~it~G~~~~l~~~~~~ 103 (369)
T PRK08153 33 FRARIGANESGFGPSPSVIAAMREAAAE-IWKYGDP-ENHDLRHALAAHHG------VAPE-NIMVGEGIDGLLGLIVRL 103 (369)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHHH-hhcCCCC-ccHHHHHHHHHHhC------CCHH-HEEEcCCHHHHHHHHHHH
Confidence 4579999999999999999998887643 4568876 47899999999984 6777 899999999999999999
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc-cCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS-KNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~-~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
++++||.|++++|+|+.+...+...|++++.+|++. ..+|++.+++.+. .++++|++++||||||.+++.+++++|+
T Consensus 104 ~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~--~~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~ 181 (369)
T PRK08153 104 YVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRD--DREDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFI 181 (369)
T ss_pred hcCCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCC--CCCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999864 3579999987664 5789999999999999999999999999
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCc
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~ 348 (434)
++|+ ++++||+||+|.++.+++.... +....+++++++||||.+|++|+|+||+++++++++.+.+.+. .++.+
T Consensus 182 ~~~~-~~~~lI~DE~y~~~~~~~~~~~---~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~~~~~--~~~~s 255 (369)
T PRK08153 182 EALP-ETTLLVLDEAYCETAPAGAAPP---IDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRN--HFGMN 255 (369)
T ss_pred HhCC-CCcEEEEeCchhhhcCcccchh---hhhcCCCEEEEecchHhccCcchheeeeecCHHHHHHHHHhhc--CCCCC
Confidence 9887 5999999999999887653322 2223568999999999999999999999999999998887664 47789
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 349 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
.+.|.++..+|++ .++++++++.++++++.+.+.|++.|+.+. +.+++|+|+++... .....++.++|++ +||.+.
T Consensus 256 ~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~-p~~~~f~~~~~~~~-~~~a~~l~~~l~~-~Gi~v~ 331 (369)
T PRK08153 256 RIAQAAALAALKD-QAYLAEVVGKIAAARDRIAAIARANGLTPL-PSATNFVAIDCGRD-GAFARAVLDGLIA-RDIFVR 331 (369)
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHCCCccC-CCcCcEEEEECCCC-cccHHHHHHHHHH-CCeEEe
Confidence 9999999999975 578899999999999999999998898765 56777889886421 1246678887765 599995
Q ss_pred -CCC
Q 013883 429 -PTS 431 (434)
Q Consensus 429 -pG~ 431 (434)
||.
T Consensus 332 ~p~~ 335 (369)
T PRK08153 332 MPGV 335 (369)
T ss_pred eCCC
Confidence 653
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=339.96 Aligned_cols=317 Identities=20% Similarity=0.254 Sum_probs=250.6
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHc----CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCC--CcEEEcCChHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRD----GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPE--KEVTVTSGCTEAI 183 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~--~~i~~t~G~~~ai 183 (434)
+++|.++|.-..+..+.+.+++.+++.+ ....|++..|.++||+++++++.+..+ .++++ ++|++|+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~~~~~~~~~I~it~G~~~al 82 (388)
T PRK08637 4 TKYNATIGMATEKGGPMYLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIVTNALTHGL 82 (388)
T ss_pred cceecceeeEecCCCcchHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCc-cccccccceeeEccchHHHH
Confidence 6778888843444445677777766654 357899999999999999999876553 23332 2799999999999
Q ss_pred HHHHHHccCCCCeEEEcCCCchhHHHHHH-HcCCEEEEEEcCCCCCCCCHHHHHhhcc----cCCcEEEecCCCCCcccC
Q 013883 184 AATILGLINPGDEVILFAPFYDSYEATLS-MAGAKIKCITLRPPDFAIPIEELKSTIS----KNTRAILMNTPHNPTGKM 258 (434)
Q Consensus 184 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~G~~~~~v~~~~~~~~~d~~~l~~~i~----~~~~~i~~~~p~NPTG~~ 258 (434)
.+++.+++++||+|++++|+|+.|...+. ..|++++.||+..+++++|++.++++++ +..+++++++||||||.+
T Consensus 83 ~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~ 162 (388)
T PRK08637 83 SLVADLFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYT 162 (388)
T ss_pred HHHHHHhcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCC
Confidence 99999999999999999999999998865 6899999999854467899999999886 445567788999999999
Q ss_pred CCHHHHHHHHHHHHH-----cCcEEEEcCcCCccccCCCCc-cc-cCCCCCCCce--EEEccCChhhccccceeeeEEeC
Q 013883 259 FTREELNVIASLCIE-----NDVLVFSDEVYDKLAFEMDHI-SI-ASLPGMYERT--VTMNSLGKTFSLTGWKIGWAIAP 329 (434)
Q Consensus 259 ~~~e~l~~i~~la~~-----~~~~iI~Deay~~~~~~~~~~-~~-~~~~~~~~~~--i~i~S~SK~~g~~G~R~G~~~~~ 329 (434)
++.+++++|+++|++ |+++||+||+|.+|.|++... ++ ..+.+..+++ ++++||||.++++|+|+||++.+
T Consensus 163 ~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~ 242 (388)
T PRK08637 163 PTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFG 242 (388)
T ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEc
Confidence 999999999999875 899999999999999876432 22 2233334565 45569999999999999999964
Q ss_pred ------hhhHHHHHHH----hhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhC----CCEeec
Q 013883 330 ------PHLTWGVRQA----HSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAV----GFKVFP 393 (434)
Q Consensus 330 ------~~~~~~l~~~----~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~ 393 (434)
+++++.+... .+...++.+.+.|.++..+|++. .+++++++..++++++.+.+.|++. ++.+.+
T Consensus 243 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~ 322 (388)
T PRK08637 243 TKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYP 322 (388)
T ss_pred cccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Confidence 5777766532 12234578999999999999874 2345566778999999999888765 588889
Q ss_pred CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 394 SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
+++|||+|+++.. . ++.+++++|++++||.+.++
T Consensus 323 ~~~g~~~~~~l~~--~-~~~~l~~~l~~~~gv~~~~~ 356 (388)
T PRK08637 323 FNSGYFMCLKLKG--V-DAEELRVHLLEKYGIGTIAL 356 (388)
T ss_pred ccceEEEEecCCh--H-HHHHHHHHHhhhcceEEEec
Confidence 9999999998842 2 46789999987789988753
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=335.56 Aligned_cols=296 Identities=26% Similarity=0.392 Sum_probs=250.3
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.|+|+.|.|++++++.+.+++.+++.+....|++. |..+||++++++++ ++++ +|++|+|+++++.+++++
T Consensus 25 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~y~~~-~~~~lr~aia~~~~------~~~~-~I~it~G~~~al~~~~~~ 96 (353)
T PRK05387 25 KLIKLNTNENPYPPSPKVLEAIRAALGDDLRLYPDP-NADALRQAIAAYYG------LDPE-QVFVGNGSDEVLAHAFLA 96 (353)
T ss_pred ceeeccCCCCCCCCCHHHHHHHHHHhhhhhhcCCCC-cHHHHHHHHHHHhC------CCHH-HEEEcCCHHHHHHHHHHH
Confidence 689999999999889999999988877656778765 66899999999985 6787 899999999999999999
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIAS 269 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~ 269 (434)
++++||+|++++|+|+.|...++..|++++.+++++ ++++|++.+++ .++++++++||||||.+++.+++++|++
T Consensus 97 l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~~~~~~~l~~ 171 (353)
T PRK05387 97 FFNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLDD-DFSIDVEDYLR----PNGGIIFPNPNAPTGIALPLAEIERILA 171 (353)
T ss_pred hcCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecCC-CCCCCHHHHHh----cCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999874 68899999874 4678999999999999999999999988
Q ss_pred HHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcc-ccCCc
Q 013883 270 LCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL-TFATS 348 (434)
Q Consensus 270 la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~-~~~~~ 348 (434)
.++ ++++|+||+|.+|. +.. ...+....+++++++||||.+|++|+|+||++++++++++++..+... .++.+
T Consensus 172 ~~~--~~~livDe~y~~~~--~~~--~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~~~~~~~~~~ 245 (353)
T PRK05387 172 ANP--DSVVVIDEAYVDFG--GES--AIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKNSFNSYPLD 245 (353)
T ss_pred hCC--CcEEEEeCcccccC--Ccc--hHHHHhhCCCEEEEEehhHhhcchhhhceeeecCHHHHHHHHHhhccCCCCCcC
Confidence 653 99999999998753 221 111222357899999999999999999999999999999988776543 46788
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 349 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
.+.|.++..+|.+ .+++++.+++++++++.+.+.|++.|+.+.+ .+++|+|+++.. .++.+++++|.+ +||.+.
T Consensus 246 ~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~---~~~~~~~~~l~~-~gi~v~ 319 (353)
T PRK05387 246 RLAQAGAIAAIED-EAYFEETRAKVIATRERLVEELEALGFEVLP-SKANFVFARHPS---HDAAELAAKLRE-RGIIVR 319 (353)
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHCCCeECC-CcCcEEEEECCC---CCHHHHHHHHHH-CCEEEE
Confidence 8999999999976 5678888999999999999999999988754 556688888642 257789988864 599997
Q ss_pred CC
Q 013883 429 PT 430 (434)
Q Consensus 429 pG 430 (434)
+.
T Consensus 320 ~~ 321 (353)
T PRK05387 320 HF 321 (353)
T ss_pred EC
Confidence 53
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=322.12 Aligned_cols=339 Identities=19% Similarity=0.220 Sum_probs=279.2
Q ss_pred cchhhhccCCchHHHHHhhhccccHHHHHHHHhhcCCeeEeCCC-CCCCCCcHHHHHHHHHHHHc-----CCCCCCCCCC
Q 013883 74 SDTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQG-FPNFDGPDFVKDAAIQAIRD-----GKNQYARGHG 147 (434)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g-~p~~~~~~~v~~~~~~~~~~-----~~~~Y~~~~G 147 (434)
.+++.++.+++.++.+.+.+++++ ++|||++| |-+..+...+.++++++-+. ....|.|+.|
T Consensus 3 ~~i~~~p~DpIlgL~e~f~~D~R~------------~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G 70 (396)
T COG1448 3 EKIEAAPADPILGLKEAFKADPRP------------NKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEG 70 (396)
T ss_pred cccccCCCCchhHHHHHHhcCCCc------------CeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCC
Confidence 345666778999999999988765 89999999 66666655566666555332 3568999999
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcE--EEcCChHHHHHHHHHHc--cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEV--TVTSGCTEAIAATILGL--INPGDEVILFAPFYDSYEATLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i--~~t~G~~~ai~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~ 223 (434)
++++++++++++.......++.+ +| +=|.|++.|+......+ ..+..+|++++|+|++|..++...|.++..||+
T Consensus 71 ~~~f~~~~~~llFG~d~~~l~~~-Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Y 149 (396)
T COG1448 71 LPEFLEAVQKLLFGADSPALAED-RVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPY 149 (396)
T ss_pred cHHHHHHHHHHhcCCCcHHHHhh-hHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeec
Confidence 99999999999975444445555 34 33788999999876655 456678999999999999999999999999998
Q ss_pred CC-CCCCCCHHHHHhhccc---CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC--CCcccc
Q 013883 224 RP-PDFAIPIEELKSTISK---NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM--DHISIA 297 (434)
Q Consensus 224 ~~-~~~~~d~~~l~~~i~~---~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~--~~~~~~ 297 (434)
.+ ++.++|++.+.+.++. +..++++.|.|||||..++.++|++|+++.++++++.++|-||++|.-+. +...++
T Consensus 150 yd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR 229 (396)
T COG1448 150 YDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALR 229 (396)
T ss_pred cccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHH
Confidence 65 6678999999998865 56667788999999999999999999999999999999999999987543 455666
Q ss_pred CCCCCCCceEEEccCChhhccccceeeeEEeC-------hhhHHHHHHHhhccccCCchHHHHHHHHHHhCC---h---H
Q 013883 298 SLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-------PHLTWGVRQAHSFLTFATSTPMQWAATAALRAP---E---T 364 (434)
Q Consensus 298 ~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-------~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~---~---~ 364 (434)
.+......+++..||||+||++|.|+|.+..- .++.++++...+...++++..+..+++.+|+++ . .
T Consensus 230 ~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~ 309 (396)
T COG1448 230 LFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQ 309 (396)
T ss_pred HHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHH
Confidence 66555556899999999999999999987752 345667888888888999999999999999996 2 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhC----CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 365 YYEELKRDYSAKKAILVEGLNAV----GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
.+.+|++++.++|..|++.|++. .|.++..+-|||.+.++ +.+++.+|.+++||+++.+..
T Consensus 310 El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gl-------s~~QV~rLree~~IY~v~sGR 374 (396)
T COG1448 310 ELEEMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGL-------SPEQVDRLREEFGIYLVASGR 374 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCC-------CHHHHHHHHHhccEEEecCCe
Confidence 46678999999999999999984 48899999999999876 458889999999999987643
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=331.35 Aligned_cols=312 Identities=25% Similarity=0.385 Sum_probs=263.1
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
..+.|+|+.|.+.+++++.+.+++.+++.+. ...|.+..|.++||++++++++ ++++ +|++++|+++++..+
T Consensus 27 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~------~~~~-~v~~~~g~t~al~~~ 99 (380)
T PRK06225 27 DKEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLG------LDDD-EALITAGATESLYLV 99 (380)
T ss_pred cCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhcC------CCCC-cEEEeCCHHHHHHHH
Confidence 4578999999999999999999999888764 4679989999999999999975 5677 899999999999999
Q ss_pred HHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC--CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHH
Q 013883 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP--PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL 264 (434)
Q Consensus 187 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~--~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l 264 (434)
+.+++.+||+|++++|+|..+...++..|++++.++++. .++.+|++.+++.++++++++++++||||||.+++.+++
T Consensus 100 ~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~ 179 (380)
T PRK06225 100 MRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEI 179 (380)
T ss_pred HHHhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCHHHH
Confidence 999999999999999999999999999999999999753 247899999999999899999999999999999999999
Q ss_pred HHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccc
Q 013883 265 NVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT 344 (434)
Q Consensus 265 ~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~ 344 (434)
++|+++|++||+++|+||+|.+|..+. .....+ .+++++++.||||.+|++|+|+||+++++++++.++.... ..
T Consensus 180 ~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~--~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l~~~~~~~~~-~~ 254 (380)
T PRK06225 180 KEFAEIARDNDAFLLHDCTYRDFAREH--TLAAEY--APEHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKSIVI-ND 254 (380)
T ss_pred HHHHHHHHHCCcEEEEehhHHHHhccC--Cchhhc--CCCCEEEEeechhhcCCccceeEEEecCHHHHHHHHHHHh-cc
Confidence 999999999999999999998875432 222222 2478999999999999999999999999999988877643 45
Q ss_pred cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEe-ecCCeeEEEeeecCCCCCCCHHHHHHHHHHh
Q 013883 345 FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKV-FPSSGTYFVVVDHTPFGHETDIAFCEYLIKE 422 (434)
Q Consensus 345 ~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 422 (434)
++.+.+.|.++..+|....++++++++.++++++.+.+.|+++ |+.+ ..+.++.|+|+++.+.+. +..+++++|. +
T Consensus 255 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~l~~~l~-~ 332 (380)
T PRK06225 255 LGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEAGI-DPEDLVEYLL-E 332 (380)
T ss_pred cCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEcccccC-CHHHHHHHHH-H
Confidence 7788899999989898767788888888888899999999874 5432 233455567888754443 5778998887 5
Q ss_pred cCeEEECCCCC
Q 013883 423 VGVVAIPTSVF 433 (434)
Q Consensus 423 ~GV~v~pG~~F 433 (434)
+||.+.||..|
T Consensus 333 ~gi~v~~g~~~ 343 (380)
T PRK06225 333 RKIFVRQGTYT 343 (380)
T ss_pred CCEEEcCCccc
Confidence 69999999754
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=331.69 Aligned_cols=305 Identities=26% Similarity=0.416 Sum_probs=259.5
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
.+.++|+.|.+.+.+++.+.+++.+.... ...|++..+ .+||++++++++ ++++ +|++|+|+++++..++.
T Consensus 32 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~~~y~~~~~-~~lr~~ia~~~~------~~~~-~i~~t~G~~~~l~~~~~ 102 (367)
T PRK02731 32 ADIIKLASNENPLGPSPKAIEAIRAAADE-LHRYPDGSG-FELKAALAEKFG------VDPE-RIILGNGSDEILELLAR 102 (367)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHh-hcCCCCCcH-HHHHHHHHHHhC------cCHH-HEEEcCCHHHHHHHHHH
Confidence 36899999988888888899988887754 567887654 789999999985 5676 89999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
+++++||+|++++|+|..+...+...|++++.++.+ ++++|++.+++++++++++|++++||||||.+++.+++++|+
T Consensus 103 ~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~ 180 (367)
T PRK02731 103 AYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPAK--DYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFL 180 (367)
T ss_pred HhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEeccc--CCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHHHH
Confidence 999999999999999999998899999999999884 688999999999988999999999999999999999999999
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCC-ccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCC
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDH-ISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT 347 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~-~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~ 347 (434)
+.++ +|+++|+||+|.++.+++.. ..+ ......+++++++||||.+|++|+|+||+++++++++.++.... .++.
T Consensus 181 ~~~~-~~~~li~De~y~~~~~~~~~~~~~-~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~~~--~~~~ 256 (367)
T PRK02731 181 AGVP-PDVLVVLDEAYAEYVRRKDYEDGL-ELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQ--PFNV 256 (367)
T ss_pred HhCC-CCcEEEEECcHHHhccCcCcccHH-HHHhhcCCEEEEeeehHhhcCcccceeeeeCCHHHHHHHHHccC--CCCC
Confidence 8875 69999999999998876532 222 22223578999999999999999999999999999998887654 4667
Q ss_pred chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEE
Q 013883 348 STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVA 427 (434)
Q Consensus 348 ~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v 427 (434)
+.+.|.++..+|++ .+++++.++.++++++.+.+.|++.|+.+.++ +++|+|+++.. + .++.+++++|.+ +||.+
T Consensus 257 ~~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~g~~~~i~~~~-~-~~~~~~~~~L~~-~gI~v 331 (367)
T PRK02731 257 NSLALAAAVAALDD-DAFVEKSRALNAEGMAWLTEFLAELGLEYIPS-VGNFILVDFDD-G-KDAAEAYQALLK-RGVIV 331 (367)
T ss_pred CHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCccCCC-CceEEEEECCC-C-CCHHHHHHHHHH-CCEEE
Confidence 88999999999986 66788889999999999999999999887654 46788888732 2 257789888865 59999
Q ss_pred ECCCCC
Q 013883 428 IPTSVF 433 (434)
Q Consensus 428 ~pG~~F 433 (434)
.||..|
T Consensus 332 ~~~~~~ 337 (367)
T PRK02731 332 RPVAGY 337 (367)
T ss_pred EeCCCC
Confidence 999766
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=324.67 Aligned_cols=295 Identities=21% Similarity=0.329 Sum_probs=244.4
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
.++.+||+.|.+++++++.+++++.+.+.+ ...|++..|..+||++++++++ ++++ +|++|+|+++++..++
T Consensus 21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~aia~~~~------~~~~-~I~it~Ga~~al~~~~ 92 (349)
T PRK07908 21 GPGLLDFAVNVRHDTPPEWLRERLAARLGD-LAAYPSTEDERRARAAVAARHG------RTPD-EVLLLAGAAEGFALLA 92 (349)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHhhH-hhcCCCccchHHHHHHHHHHhC------cChh-hEEECCCHHHHHHHHH
Confidence 347999999999999999999999888764 4679988899999999999985 6777 8999999999999888
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
+ +++| .++++.|+|..+...++..|++++.+++++ ++++|++.+ +++++++++++||||||.+++.+++.
T Consensus 93 ~--l~~~-~viv~~P~y~~~~~~~~~~G~~i~~v~~~~-~~~~d~~~l----~~~~~~i~l~np~NPTG~~~~~~~l~-- 162 (349)
T PRK07908 93 R--LRPR-RAAVVHPSFTEPEAALRAAGIPVHRVVLDP-PFRLDPAAV----PDDADLVVIGNPTNPTSVLHPAEQLL-- 162 (349)
T ss_pred h--cCCC-eEEEeCCCChHHHHHHHHcCCEEEeeccCc-ccCcChhHh----ccCCCEEEEcCCCCCCCCCcCHHHHH--
Confidence 7 5664 677889999999999999999999999985 488888754 45789999999999999999987654
Q ss_pred HHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCC
Q 013883 268 ASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT 347 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~ 347 (434)
++|+ ++.++|+||+|.++.. +...++... ..+++++++||||.+|++|+|+||+++++++++.+..... .+..
T Consensus 163 -~l~~-~~~~iIvDe~y~~~~~-~~~~~l~~~--~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~--~~~~ 235 (349)
T PRK07908 163 -ALRR-PGRILVVDEAFADAVP-GEPESLAGD--DLPGVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRGRA--HWPV 235 (349)
T ss_pred -HHHh-cCCEEEEECcchhhcc-CCccccccc--cCCCEEEEeecccccCCccceeeeeecCHHHHHHHHhcCC--CCCc
Confidence 4555 5788999999998854 333344332 3468999999999999999999999999999988877654 3566
Q ss_pred chHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 348 STPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 348 ~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
+.+.+.++..++.. ..+++++++++++++++.+.+.|++.|+.+.++.+++|+|++++. ..++.+.| +++||.
T Consensus 236 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~~~~~~~~~-----~~~~~~~l-~~~gI~ 309 (349)
T PRK07908 236 GTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAVGARVVDPAAAPFVLVRVPD-----AELLRKRL-RERGIA 309 (349)
T ss_pred cHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhCCcEeccCCCceEEEEECCc-----HHHHHHHH-HhCCEE
Confidence 67778777777764 356788899999999999999999889998888899999998742 44555555 667999
Q ss_pred EECCCCC
Q 013883 427 AIPTSVF 433 (434)
Q Consensus 427 v~pG~~F 433 (434)
+.||+.|
T Consensus 310 v~~g~~f 316 (349)
T PRK07908 310 VRRGDTF 316 (349)
T ss_pred EEECCCC
Confidence 9999887
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=320.90 Aligned_cols=290 Identities=23% Similarity=0.359 Sum_probs=237.9
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCC-CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
.+.|+|+.|.|++++++.+.+++.+++..+. ..|++. |.++||+++++++++.+ ++++ +|++|+|+++++.+++
T Consensus 19 ~~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~-~~~~Lr~aia~~~~~~~---~~~~-~i~it~Ga~~~i~~~~ 93 (335)
T PRK14808 19 RDRTYLALNENPFPFPEDLVDEVFRRLNSDTLRIYYDS-PDEELIEKILSYLDTDF---LSKN-NVSVGNGADEIIYVMM 93 (335)
T ss_pred CceeEecCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC-ChHHHHHHHHHHhCCCC---CCcc-eEEEcCCHHHHHHHHH
Confidence 4789999999999999999999988775533 447655 88999999999998643 6677 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
.++ |.|++++|+|+.|...++.+|++++.+|+++ ++.++.+. + .+++++++++||||||.+++.+++++|
T Consensus 94 ~~~----d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~----~-~~~~~i~i~nP~NPTG~~~s~~~l~~l 163 (335)
T PRK14808 94 LMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTK-DLRIPEVN----V-GEGDVVFIPNPNNPTGHVFEREEIERI 163 (335)
T ss_pred HHh----CcEEECCCCHHHHHHHHHHcCCeEEEecCCC-cCCCChhH----c-cCCCEEEEeCCCCCCCCCcCHHHHHHH
Confidence 887 6899999999999999999999999999875 45554332 2 357899999999999999999998888
Q ss_pred HHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCC
Q 013883 268 ASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT 347 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~ 347 (434)
+ +++++||+||+|.+|. +.... .+....+++++++||||.+|++|+|+||+++++++++++.+.+ ..++.
T Consensus 164 ~----~~~~~ii~DE~Y~~f~-~~~~~---~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~--~~~~~ 233 (335)
T PRK14808 164 L----KTGAFVALDEAYYEFH-GESYV---DLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVR--LPFNV 233 (335)
T ss_pred H----hcCCEEEEECchhhhc-CCchH---HHHHhCCCEEEEEechhhccCcccceEEEEeCHHHHHHHHHhc--CCCCC
Confidence 6 4899999999999974 21111 1112356899999999999999999999999999999988766 34778
Q ss_pred chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEE
Q 013883 348 STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVA 427 (434)
Q Consensus 348 ~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v 427 (434)
+.+.|.++..+|++ .++.++.++.++++++.+.+.|++.|+.+.+++|+ |+|+.+.. .+..++.++|.+ +||.|
T Consensus 234 ~~~~q~a~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~g~-f~~~~l~~---~~~~~~~~~l~~-~Gi~V 307 (335)
T PRK14808 234 SYVSQMFAKVALDH-REIFEERTKFIVEERERMKSALREMGYRITDSRGN-FVFIFMEK---EEKERLLEHLRA-KNIAV 307 (335)
T ss_pred CHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCe-EEEEeCCC---ccHHHHHHHHHH-CCeEE
Confidence 88999999888886 45677777888888999999999999998888777 55777642 245677777654 59999
Q ss_pred EC
Q 013883 428 IP 429 (434)
Q Consensus 428 ~p 429 (434)
.+
T Consensus 308 ~~ 309 (335)
T PRK14808 308 RS 309 (335)
T ss_pred EE
Confidence 85
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=327.19 Aligned_cols=295 Identities=20% Similarity=0.330 Sum_probs=244.3
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.++|+.+.+.+++++.+. ......|++... .+|+++++++++ ++++ +|++|+|+++++.+++.+
T Consensus 29 ~~~~l~~Nenp~~~~~~~~-------~~~~~~Yp~~~~-~~l~~~~a~~~g------~~~~-~I~~~~Gs~e~i~~~~~~ 93 (351)
T PRK01688 29 GDVWLNANEYPTAVEFQLT-------QQTLNRYPECQP-KAVIENYAAYAG------VKPE-QVLVSRGADEGIELLIRA 93 (351)
T ss_pred CceEecCCCCCCCCChhhc-------ccccccCCCCCh-HHHHHHHHHHhC------CCHH-HEEEcCCHHHHHHHHHHH
Confidence 4689999988888776431 123467877653 688888888875 6788 899999999999999999
Q ss_pred ccCCC-CeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 190 LINPG-DEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 190 l~~~g-d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
++++| |.|++++|+|..|...++..|++++.+|+++ ++++|++.+++++ +++++|++++||||||.+++.+++++|+
T Consensus 94 ~~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~-~~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~ 171 (351)
T PRK01688 94 FCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLD-NWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLL 171 (351)
T ss_pred hcCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCC-CCCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 99997 9999999999999999999999999999975 6899999999988 5899999999999999999999999999
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCc
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~ 348 (434)
+.|++ +.+||+||+|.+|.... +...+....+++++++||||.||++|+|+||+++++++++.+++... .++.+
T Consensus 172 ~~~~~-~~~vivDEay~~f~~~~---s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~~l~~~~~--~~~v~ 245 (351)
T PRK01688 172 ELTRG-KAIVVADEAYIEFCPQA---SLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVINLLLKVIA--PYPLS 245 (351)
T ss_pred HhCCC-CcEEEEECchhhcCCCC---ChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHHHHHHHhccC--CCCCC
Confidence 99876 68899999999986321 22222234579999999999999999999999999999998887653 56788
Q ss_pred hHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 349 TPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 349 ~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
.+.|.++..+|.+. .+++++.++.+.++|+.+.+.|+++ |+..+.+.++.|+|+++. +..+++++|++ +||.
T Consensus 246 ~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~-----~~~~l~~~L~~-~gi~ 319 (351)
T PRK01688 246 TPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFT-----ASSAVFKSLWD-QGII 319 (351)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC-----CHHHHHHHHHH-CCeE
Confidence 88888888899864 4678888889999999999999988 664333445567888763 36788888875 5999
Q ss_pred EECCCCC
Q 013883 427 AIPTSVF 433 (434)
Q Consensus 427 v~pG~~F 433 (434)
++++..|
T Consensus 320 vr~~~~~ 326 (351)
T PRK01688 320 LRDQNKQ 326 (351)
T ss_pred EEECCCc
Confidence 9987644
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=325.42 Aligned_cols=299 Identities=28% Similarity=0.414 Sum_probs=250.1
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.|+|+.|.|++++++.+.+++.+.+.. ...|+ ..|..+||++++++++ ++++ +|++++|+++++..++..
T Consensus 23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~~~y~-~~g~~~lr~~ia~~~~------~~~~-~I~~~~G~~~~l~~~~~~ 93 (352)
T PRK03321 23 GAIKLSSNETPFGPLPSVRAAIARAAAG-VNRYP-DMGAVELRAALAEHLG------VPPE-HVAVGCGSVALCQQLVQA 93 (352)
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHHh-cCcCC-CCcHHHHHHHHHHHhC------cCHH-HEEECCCHHHHHHHHHHH
Confidence 6799999999998888999998887653 45675 4699999999999986 6677 899999999999999999
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIAS 269 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~ 269 (434)
++++||+|+++.|+|..|...++..|++++.+++++ ++++|++.++++++++++++++++||||||.+++.+++.++++
T Consensus 94 ~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~ 172 (352)
T PRK03321 94 TAGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTP-DHTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARFLD 172 (352)
T ss_pred hcCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCC-CCCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHHHH
Confidence 999999999999999999999999999999999875 5789999999999889999999999999999999998888887
Q ss_pred HHHHcCcEEEEcCcCCccccCCCCc-cccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCc
Q 013883 270 LCIENDVLVFSDEVYDKLAFEMDHI-SIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348 (434)
Q Consensus 270 la~~~~~~iI~Deay~~~~~~~~~~-~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~ 348 (434)
.+ +++++||+||+|.++.+++... .+..+ ...+++++++||||.||++|+|+||+++++++++.+++.. ..++.+
T Consensus 173 ~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~--~~~~~s 248 (352)
T PRK03321 173 AV-PADVLVVLDEAYVEYVRDDDVPDGLELV-RDHPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRKVA--VPFSVN 248 (352)
T ss_pred hC-CCCeEEEEechHHHhccCcCCCcHHHHH-hhCCCEEEEecchHHhhhHHHhhhhhcCCHHHHHHHHHhc--CCCCCC
Confidence 65 4799999999999998865432 22222 2347899999999999999999999999999999888753 467889
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 349 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
.+.|.++..+|...+++.+ ..+++.++++.+.+.|++.|+.+.++ +++|+|+++.. +..+++++| +++||.+.
T Consensus 249 ~~~q~~a~~~l~~~~~~~~-~~~~~~~~r~~~~~~L~~~~~~~~~~-~g~~i~i~l~~----~~~~~~~~l-~~~gI~v~ 321 (352)
T PRK03321 249 SLAQAAAIASLAAEDELLE-RVDAVVAERDRVRAALRAAGWTVPPS-QANFVWLPLGE----RTADFAAAA-AEAGVVVR 321 (352)
T ss_pred HHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHHHHHHHCCCccCCC-CCCEEEEeCCC----CHHHHHHHH-HHCCEEEE
Confidence 9999999999986454544 44455666788999999888876554 56788988732 467888887 45799998
Q ss_pred C
Q 013883 429 P 429 (434)
Q Consensus 429 p 429 (434)
|
T Consensus 322 ~ 322 (352)
T PRK03321 322 P 322 (352)
T ss_pred c
Confidence 7
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=321.04 Aligned_cols=296 Identities=23% Similarity=0.360 Sum_probs=246.5
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHc-CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRD-GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
..++|+.|.|++++|+.+.+++.+.+.. ....|++. +..+||++++++++ ++++ +|++|+|+++++..++.
T Consensus 23 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~~~y~~~-~~~~lr~~ia~~~~------~~~~-~i~it~G~~~~l~~~~~ 94 (351)
T PRK14807 23 YKYKMDANETPFELPEEVIKNIQEIVKSSQVNIYPDP-TAEKLREELARYCS------VVPT-NIFVGNGSDEIIHLIML 94 (351)
T ss_pred ceeEccCCCCCCCCCHHHHHHHHHHhhcCcccCCCCc-cHHHHHHHHHHHhC------CCcc-cEEEecCHHHHHHHHHH
Confidence 5689999999999999999999887764 34668765 46899999999975 6677 89999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
+++++||+|++++|+|..+...++..|++++.++.++ ++++|++.+++++++ ++++|++++||||||.+++.+++++|
T Consensus 95 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l 173 (351)
T PRK14807 95 AFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKE-DYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKI 173 (351)
T ss_pred HhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCC-CCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999874 678999999999975 89999999999999999998887666
Q ss_pred HHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCC
Q 013883 268 ASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT 347 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~ 347 (434)
+ ++++.++|+||+|.++. +...... ....+++++++||||.+|++|+|+||+++++++++.++..+. .++.
T Consensus 174 ~---~~~~~~~ivDe~y~~~~-~~~~~~~---~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~--~~~~ 244 (351)
T PRK14807 174 I---EKSRGIVVVDEAYFEFY-GNTIVDV---INEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKS--PYNI 244 (351)
T ss_pred H---HhCCCEEEEeCcchhhc-ccchHHH---hhhCCCEEEEecchHhcccchhceeeeecCHHHHHHHHHccC--CCCc
Confidence 5 46678899999998873 3222221 123578999999999999999999999999999998887654 4667
Q ss_pred chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 348 STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 348 ~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
+.+.|.++..+|++ .++++.++.++++++.+.+.|++. |+.+.+++ ++|+|+++. +..++++.|++ +||.
T Consensus 245 ~~~~q~~~~~~l~~--~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~-~~~~~i~~~-----~~~~~~~~l~~-~gV~ 315 (351)
T PRK14807 245 NSLSQVIALKVLRT--GVLKERVNYILNERERLIKELSKIPGIKVYPSK-TNFILVKFK-----DADYVYQGLLE-RGIL 315 (351)
T ss_pred CHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHhCCCcEECcCC-ccEEEEEcC-----CHHHHHHHHHH-CCEE
Confidence 88999999999985 356777778888999999999875 88876554 557888873 36677777765 5999
Q ss_pred EECCCC
Q 013883 427 AIPTSV 432 (434)
Q Consensus 427 v~pG~~ 432 (434)
|.++..
T Consensus 316 v~~~~~ 321 (351)
T PRK14807 316 VRDFSK 321 (351)
T ss_pred EEECCC
Confidence 988653
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=323.72 Aligned_cols=301 Identities=27% Similarity=0.480 Sum_probs=257.1
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
++|||++|.+++++++.+.+++.++... ...|++..+ .+||++++++++ ++++ +|++++|+++++..++.+
T Consensus 20 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~~~y~~~~~-~~lr~~ia~~~~------~~~~-~i~~~~G~~~~l~~~~~~ 90 (346)
T TIGR01141 20 EVIKLNSNENPFGPPPKAKEALRAEADK-LHRYPDPDP-AELKQALADYYG------VDPE-QILLGNGSDEIIELLIRA 90 (346)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHhHHH-hhcCCCCCH-HHHHHHHHHHhC------cChH-HEEEcCCHHHHHHHHHHH
Confidence 6899999998999999999999887643 467888776 899999999987 5677 899999999999999999
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIAS 269 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~ 269 (434)
++++||+|++++|+|+.+...++..|++++.+++++ ++.+|++.+++++++++++|++++||||||.+++.++++++++
T Consensus 91 l~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~l~~ 169 (346)
T TIGR01141 91 FLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDE-DGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLE 169 (346)
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCC-CCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999875 4779999999998889999999999999999999999999999
Q ss_pred HHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCch
Q 013883 270 LCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATST 349 (434)
Q Consensus 270 la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~ 349 (434)
.++ +++++|+||+|..+.+.+...... ...+++++++|+||.+|++|+|+||++++++++++++.... .++.+.
T Consensus 170 ~~~-~~~~ii~D~~y~~~~~~~~~~~~~---~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--~~~~~~ 243 (346)
T TIGR01141 170 RTP-EDALVVVDEAYGEFSGEPSTLPLL---AEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRA--PFNLSR 243 (346)
T ss_pred hCC-CCcEEEEECchhhhcCCccHHHHH---hhCCCEEEEehhhHhhhchhhhceeeecCHHHHHHHHhccC--CCCCCH
Confidence 887 799999999999876542221111 12357899999999999899999999999999988876543 467788
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 350 PMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 350 ~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
+.|.++..+++.. +++++.+++++++++.+++.|+++ |+++.++ +++|+|+++.. ++.+++++|.+ +||.+.
T Consensus 244 ~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~g~~~~~~~~~----~~~~~~~~L~~-~gI~v~ 316 (346)
T TIGR01141 244 LAQAAAIAALRDD-DFIEKTVEEINAERERLYDGLKKLPGLEVYPS-DANFVLIRFPR----DADALFEALLE-KGIIVR 316 (346)
T ss_pred HHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHhcCCCEECCC-cCCEEEEecCC----CHHHHHHHHHH-CCeEEE
Confidence 9999999999874 478888999999999999999987 8886554 56788888743 47788888865 599999
Q ss_pred CCCCC
Q 013883 429 PTSVF 433 (434)
Q Consensus 429 pG~~F 433 (434)
||+.|
T Consensus 317 ~g~~f 321 (346)
T TIGR01141 317 DLNSY 321 (346)
T ss_pred eCCCc
Confidence 99877
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=320.91 Aligned_cols=286 Identities=18% Similarity=0.271 Sum_probs=227.2
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
..|+|+.+...+... .....|+... ..+||++++++++ ++++ +|++|+|+++++..++.
T Consensus 17 ~~i~l~~Nenp~~~~------------~~~~~Yp~~~-~~~lr~~ia~~~~------~~~~-~I~it~Gs~~~l~~~~~- 75 (332)
T PRK06425 17 RIIDFSANINDFMDI------------GDISIYPEIS-YTDIEDQIKIYTQ------GLKI-KVLIGPGLTHFIYRLLS- 75 (332)
T ss_pred CEEEeccccCCCcCh------------hhcccCcCcC-HHHHHHHHHHHhC------CCcc-eEEECCCHHHHHHHHHH-
Confidence 578999886655311 1235687653 5899999999987 6677 89999999999999987
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIAS 269 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~ 269 (434)
++++| .|++++|+|+.|...++..|++++.+|+++ +++|.+.+++ .++++|++++||||||.+++.+++++|++
T Consensus 76 ~~~~~-~vv~~~P~y~~y~~~~~~~G~~v~~vp~~~--~~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~~~l~~ 149 (332)
T PRK06425 76 YINVG-NIIIVEPNFNEYKGYAFTHGIRISALPFNL--INNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSLLTISE 149 (332)
T ss_pred HhCCC-cEEEeCCChHHHHHHHHHcCCeEEEEeCCc--ccCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHHHHHHH
Confidence 56776 577779999999999999999999999874 4556665553 37899999999999999999999999999
Q ss_pred HHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCch
Q 013883 270 LCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATST 349 (434)
Q Consensus 270 la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~ 349 (434)
+|+++|++||+||+|.+|.+++ ..+...+....+++++++||||.+|++|+|+||+++++++++.+++... .+..+.
T Consensus 150 ~a~~~~~~iI~DE~Y~~~~~~~-~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~~~--~~~~~~ 226 (332)
T PRK06425 150 ICRKKGALLFIDEAFIDFVPNR-AEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMKISRKITE--PWSVCD 226 (332)
T ss_pred HHHHcCCEEEEecchhcccccc-chhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHHHHHHHHcCC--CCccCH
Confidence 9999999999999999998754 2233334334579999999999999999999999999999988887543 333444
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 350 PMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 350 ~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
+.+.++. .. ..+.+++++++.++++|+.+.+.|++.|+.+..+.++.|+|+.++ ++.+++++|++ +||.+.|
T Consensus 227 ~~~~~l~-~~-~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~g~f~~~~~~-----~~~~~~~~l~~-~gi~v~~ 298 (332)
T PRK06425 227 PAIDFIR-SI-DLDYVAKHSLDIMENERSYLINNLEAMGFRAAGDPSANFITFMIP-----DAHDFYSYLLK-NGILVRL 298 (332)
T ss_pred HHHHHHH-Hh-hhHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCceEEEEEcC-----CHHHHHHHHHH-CCeEEEE
Confidence 4332221 11 224567788999999999999999999988864445557788763 47789998876 5999999
Q ss_pred CCCC
Q 013883 430 TSVF 433 (434)
Q Consensus 430 G~~F 433 (434)
|+.|
T Consensus 299 ~~~f 302 (332)
T PRK06425 299 LDDY 302 (332)
T ss_pred CCCC
Confidence 9887
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=321.76 Aligned_cols=296 Identities=22% Similarity=0.338 Sum_probs=240.8
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.++|+.+...+++++... .....|++.. ..+||++++++++ ++++ +|++|+|+++++.+++.+
T Consensus 32 ~~~~~~~ne~~~~~~~~~~--------~~~~~Y~~~~-~~~lr~~ia~~~~------~~~~-~I~~t~G~~~~l~~~~~~ 95 (364)
T PRK04781 32 GDVWLNANESAWANPADPD--------ASTRRYPDPQ-PPGLRSALAALYG------CAPE-QLLIGRGSDEAIDLLVRA 95 (364)
T ss_pred CCEEeeCCCCCCCCChhhc--------chhccCCCCC-HHHHHHHHHHHhC------cChH-HEEEeCCHHHHHHHHHHH
Confidence 4577887766666654311 1245688764 6899999999985 6777 899999999999999999
Q ss_pred ccCCC-CeEEEcCCCchhHHHHHHHcCCEEEEEEcCC--CCCCCCHHHHHhhc-ccCCcEEEecCCCCCcccCCCHHHHH
Q 013883 190 LINPG-DEVILFAPFYDSYEATLSMAGAKIKCITLRP--PDFAIPIEELKSTI-SKNTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 190 l~~~g-d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~--~~~~~d~~~l~~~i-~~~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
++.+| |.|++++|+|..|...++..|++++.+|+++ +++.+|++.+++.+ ++++++|++++||||||.+++.++++
T Consensus 96 ~~~~g~~~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~ 175 (364)
T PRK04781 96 LCVPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIE 175 (364)
T ss_pred hcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHH
Confidence 99999 7999999999999999999999999999853 34678999886544 66899999999999999999999999
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcccc
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTF 345 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~ 345 (434)
+|++.|+ ++++||+||+|.+|.++. ....+....+++++++||||.||++|+|+||+++++++++.+++.+. .+
T Consensus 176 ~l~~~~~-~~~~iI~Deay~~f~~~~---~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~~--~~ 249 (364)
T PRK04781 176 RALQALQ-GKALVVVDEAYGEFSDVP---SAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRCQA--PY 249 (364)
T ss_pred HHHHhCC-CCcEEEEeCcchhhcCCc---chHHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHHHHHhccC--CC
Confidence 9999885 589999999999987532 22222234678999999999999999999999999999999988764 56
Q ss_pred CCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhc
Q 013883 346 ATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEV 423 (434)
Q Consensus 346 ~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~ 423 (434)
+.+.+.|.++..+|.+. .++..+.++.++++|+.+.+.|+++ |+....+.+++|+|+++. +..++.++|. ++
T Consensus 250 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~-----~~~~~~~~l~-~~ 323 (364)
T PRK04781 250 PVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFD-----DAEAAFQALL-AA 323 (364)
T ss_pred CCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC-----CHHHHHHHHH-HC
Confidence 78889999999999875 3556666678899999999999988 664334566778999873 3567777775 56
Q ss_pred CeEEECCCCC
Q 013883 424 GVVAIPTSVF 433 (434)
Q Consensus 424 GV~v~pG~~F 433 (434)
||.|.||..|
T Consensus 324 gI~v~~~~~~ 333 (364)
T PRK04781 324 GVVVRDQRAA 333 (364)
T ss_pred CeEEeeCCCC
Confidence 9999999865
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=305.95 Aligned_cols=293 Identities=25% Similarity=0.440 Sum_probs=253.7
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhcCC--CCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHH-HcC
Q 013883 139 KNQYARGHGVPEFNSAIASRFKKDSGL--EVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLS-MAG 215 (434)
Q Consensus 139 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~--~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~G 215 (434)
...|.+..|++++|+++|+++.+..|- ..+|+ ++++++|++.++..++..+.+|||..+++.|.|+++..-++ ..|
T Consensus 114 la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~-~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rTg 192 (471)
T KOG0256|consen 114 LAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPE-RVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRTG 192 (471)
T ss_pred HhhcccccCchHHHHHHHHHHHHHhCCCCccCcc-ceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccceeccC
Confidence 357899999999999999999877654 46888 79999999999999999999999999999999999866554 479
Q ss_pred CEEEEEEcCC-CCCCCCHHHHHhhccc------CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccc
Q 013883 216 AKIKCITLRP-PDFAIPIEELKSTISK------NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLA 288 (434)
Q Consensus 216 ~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~ 288 (434)
.++++|.+.. .+++++.+.+|+++.+ +.|.|++.||+||.|.++++|++..++++|.++|+.+|+||+|.+-+
T Consensus 193 veivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sV 272 (471)
T KOG0256|consen 193 VEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSV 272 (471)
T ss_pred ceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccc
Confidence 9999999986 5689999999998854 67899999999999999999999999999999999999999999999
Q ss_pred cCCC-CccccCCCC----CCCceEEEccCChhhccccceeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCC
Q 013883 289 FEMD-HISIASLPG----MYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAP 362 (434)
Q Consensus 289 ~~~~-~~~~~~~~~----~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~ 362 (434)
|+.. +.++..+.. ..+++.+++|+||.||+||+|+|.++.. ++++...+++.. ....++..|+.++.+|.+.
T Consensus 273 F~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmss--f~~vSs~tQ~~la~LLSD~ 350 (471)
T KOG0256|consen 273 FDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSS--FGLVSSQTQYLLASLLSDE 350 (471)
T ss_pred cCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhh--ccCCcHHHHHHHHHHhchH
Confidence 8863 344433321 4678999999999999999999999985 566666676664 3567888999999999984
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCC----CCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 363 ---ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPF----GHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 363 ---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
++|+++...|++.+.+++.+.|+++|+++.+.++|+|+|+++.++ ..+...++.++++++.++.++||+.|.
T Consensus 351 ~f~~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~ 429 (471)
T KOG0256|consen 351 EFTREYLRENNKRLRIRHRYIVEGLKALGIPCLKSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCH 429 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhcCCceeecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcce
Confidence 477889999999999999999999999999999999999997543 333456899999999999999999874
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=314.78 Aligned_cols=296 Identities=31% Similarity=0.476 Sum_probs=246.5
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEE-cCChHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTV-TSGCTEAIAATIL 188 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~-t~G~~~ai~~~~~ 188 (434)
++|+|+.|.+++++++.+.+++.+.+.. ...|++..+ .+||++++++++ ++++ +|++ ++|+++++..++.
T Consensus 35 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~~-~~lr~~ia~~~~------~~~~-~i~~~~~Ga~~~i~~~~~ 105 (361)
T PRK00950 35 SIIKLGSNENPLGPSPKAVEAIEKELSK-IHRYPEPDA-PELREALSKYTG------VPVE-NIIVGGDGMDEVIDTLMR 105 (361)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHHh-hcCCCCCCH-HHHHHHHHHHhC------CCHH-HEEEeCCCHHHHHHHHHH
Confidence 7899999998898999888888877654 456877655 899999999985 5677 8999 8999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
.++++||.|++++|+|..+...++..|++++.++.++ ++.+|++.+++.++++++++++++||||||.+++.+++++|
T Consensus 106 ~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l- 183 (361)
T PRK00950 106 TFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAKREE-DFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDIRKI- 183 (361)
T ss_pred HhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCC-CCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCHHHHHHH-
Confidence 9999999999999999999999999999999998653 67899999999998889999999999999999998875554
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCc
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~ 348 (434)
|+++|+++|+||+|.+|. +... ..+....+++++++||||.+|++|+|+||+++++++++.+++... .++.+
T Consensus 184 --~~~~~~~li~De~y~~~~-~~~~---~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~--~~~~~ 255 (361)
T PRK00950 184 --LESTDALVFVDEAYVEFA-EYDY---TPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAKT--PFSLT 255 (361)
T ss_pred --HHHCCcEEEEECchhhhC-ccch---HHHHHhcCCEEEEEeehHhhcCchhhcchhcCCHHHHHHHHHhcC--CCCCC
Confidence 667899999999999875 2221 122223468999999999999999999999999999988877654 45678
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 349 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
.+.|.++..+|.+ .+++++.+++++++++.+.+.|+ +.+. +.+++|+|+++.. .++.+++++|.+ +||.+.
T Consensus 256 ~~~~~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~l~---~~~~-~~~~~~i~~~~~~---~~~~~~~~~l~~-~gv~v~ 326 (361)
T PRK00950 256 RLSQAAAIAALSD-KEYIEKSIEHGIKSREYLYNELP---FKVY-PSEANFVLVDVTP---MTAKEFCEELLK-RGVIVR 326 (361)
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHhhcC---eeEC-CCcceEEEEECCC---CCHHHHHHHHHH-CCEEEe
Confidence 8899999999986 56788888899999999888886 5554 4566788988732 257889999876 599999
Q ss_pred CCCCC
Q 013883 429 PTSVF 433 (434)
Q Consensus 429 pG~~F 433 (434)
||..|
T Consensus 327 ~~~~f 331 (361)
T PRK00950 327 DCTSF 331 (361)
T ss_pred eCCcc
Confidence 99876
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=310.93 Aligned_cols=286 Identities=23% Similarity=0.371 Sum_probs=238.3
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.++|+.|.|.++++ ..+ ...+....|++..+ ++||++++++++ ++++ +|++|+|+++++..+...
T Consensus 18 ~~~~~~~~~~~~~~~--~~~----~~~~~~~~y~~~~~-~~lr~~la~~~~------~~~~-~i~~t~G~~~~i~~~~~~ 83 (330)
T TIGR01140 18 DWLDFSTGINPLGPP--VPP----IPASAWARYPDPEY-DELRAAAAAYYG------LPAA-SVLPVNGAQEAIYLLPRL 83 (330)
T ss_pred heeEccccCCCCCCC--hhh----cchHHHhhCCCccH-HHHHHHHHHHhC------CChh-hEEECCCHHHHHHHHHHH
Confidence 679999998777765 221 11123467888776 999999999875 5677 899999999999997665
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIAS 269 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~ 269 (434)
+.+| .|++++|+|..+...++..|.+++.++ |++.+++.+ ++++++++++||||||.+++.+++++|++
T Consensus 84 -l~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~--------d~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~~~~~~l~~ 152 (330)
T TIGR01140 84 -LAPG-RVLVLAPTYSEYARAWRAAGHEVVELP--------DLDRLPAAL-EELDVLVLCNPNNPTGRLIPPETLLALAA 152 (330)
T ss_pred -hCCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC--------CHHHHHhhc-ccCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 5777 699999999999999999999998886 788999988 46789999999999999999999999999
Q ss_pred HHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCch
Q 013883 270 LCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATST 349 (434)
Q Consensus 270 la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~ 349 (434)
+|++||++||+||+|.++.++. ++..+.+..+++++++||||.+|++|+|+||+++++++++.+..... .++.+.
T Consensus 153 ~a~~~~~~ii~De~y~~~~~~~---~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~~~~~--~~~~s~ 227 (330)
T TIGR01140 153 RLRARGGWLVVDEAFIDFTPDA---SLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALLARLREALG--PWTVNG 227 (330)
T ss_pred HhHhcCCEEEEECcccccCCcc---chhhHhccCCCEEEEEecchhhcCchhhhhheeCCHHHHHHHHhcCC--CCCchH
Confidence 9999999999999999887542 22323223578999999999999999999999999999988876653 466788
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC-CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 350 PMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG-FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 350 ~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
++|.++..+|++ .+|.++.+++++++++.+.+.|++.+ +.+. +.+++|+|+++. +..+++++|++ +||.+.
T Consensus 228 ~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~f~~~~~~-----~~~~l~~~l~~-~gi~v~ 299 (330)
T TIGR01140 228 PARAAGRAALAD-TAWQAATRARLAAERARLAALLARLGGLEVV-GGTALFLLVRTP-----DAAALHEALAR-RGILIR 299 (330)
T ss_pred HHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCeEEEEEcC-----CHHHHHHHHHH-CCEEEE
Confidence 899999999986 45778889999999999999999987 5554 456788999864 36789999976 599999
Q ss_pred CCCCC
Q 013883 429 PTSVF 433 (434)
Q Consensus 429 pG~~F 433 (434)
||..|
T Consensus 300 pg~~f 304 (330)
T TIGR01140 300 DFDNF 304 (330)
T ss_pred ECCCC
Confidence 99987
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=311.41 Aligned_cols=285 Identities=22% Similarity=0.339 Sum_probs=235.6
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHc-CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRD-GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
+.|+|+.|.+++++++.+.+++.+++.. ....|++ .|.++||++++++++ ++++ +|++|+|+++++..++.
T Consensus 19 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~g~~~lr~~ia~~~~------~~~~-~I~~t~G~~~~l~~~~~ 90 (337)
T PRK03967 19 YRIWLDKNENPFDLPEELKEEIFEELKRVPFNRYPH-ITSDPLREAIAEFYG------LDAE-NIAVGNGSDELISYLVK 90 (337)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHhhcCccccCCC-CCHHHHHHHHHHHhC------cCcc-eEEEcCCHHHHHHHHHH
Confidence 6799999999888889999998888754 3567864 699999999999986 6787 89999999999998887
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
.+ +||+|++++|+|..|...++..|++++.++++. ++++|++.+++.+ ++++++++++||||||.+++.+++.+++
T Consensus 91 ~~--~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~~i~ 166 (337)
T PRK03967 91 LF--EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLKE-DFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEEEILKVL 166 (337)
T ss_pred Hh--CCCeEEEeCCChHHHHHHHHHcCCeEEEeecCC-CCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 76 799999999999999999999999999999874 5889999998875 5788999999999999999988766654
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCc
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~ 348 (434)
++++++|+||+|.+|... . ...+....+++++++||||.||++|+|+||+++++++++++++... .++.+
T Consensus 167 ----~~~~~ii~De~y~~~~~~-~---~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~~~~~~--~~~~~ 236 (337)
T PRK03967 167 ----ETGKPVVLDEAYAEFSGK-S---LIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIIDALYRIKP--PFSLN 236 (337)
T ss_pred ----hcCCEEEEECchhhhccc-c---hHHHHhhCCCEEEEecchHhhcchhhhheeeecCHHHHHHHHhhcC--CCCCC
Confidence 479999999999987521 1 1122223568999999999999999999999999999998887764 45778
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 349 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
.+.|.++..+|++ .+++.+.++.+.++|+.+.+.|.+. ..+.+++|+|+++ .+++.|++ +||.|+
T Consensus 237 ~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~~~~~~~~~---------~~~~~l~~-~gi~v~ 301 (337)
T PRK03967 237 ILTMKIVRLALDH-YDLIEERIDYIIKERERVRRELGEY----AYPSDANFLLLKL---------DAYDYLLE-NGIVVR 301 (337)
T ss_pred HHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHhccC----cCCCCCcEEEEhH---------HHHHHHHH-CCEEEE
Confidence 9999999999986 4466666667777888888888765 2457788889875 26677765 599998
Q ss_pred CCC
Q 013883 429 PTS 431 (434)
Q Consensus 429 pG~ 431 (434)
++.
T Consensus 302 ~~~ 304 (337)
T PRK03967 302 KLS 304 (337)
T ss_pred eCC
Confidence 764
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=314.80 Aligned_cols=290 Identities=25% Similarity=0.405 Sum_probs=239.7
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.++|+.+++.+++++.+ .. .....|++. +..+||++++++++ ++++ +|++|+|+++++.+++.+
T Consensus 32 ~~~~l~~ne~~~~~~~~~------~~-~~~~~Yp~~-~~~~Lr~aia~~~~------~~~~-~I~it~Gs~~~i~~~~~~ 96 (354)
T PRK04635 32 GDIWINANESPFNNEYKL------DL-ARLNRYPEC-QPPELINAYSAYAG------VAPE-QILTSRGADEAIELLIRA 96 (354)
T ss_pred CcEEeeCCCCCCCCChhh------hh-HHhccCCCC-CHHHHHHHHHHHhC------cCHH-HEEEeCCHHHHHHHHHHH
Confidence 568999999888887643 11 124678876 47999999999875 7788 999999999999999999
Q ss_pred ccCCC-CeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 190 LINPG-DEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 190 l~~~g-d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
++++| |+|++++|+|..|...++..|++++.+|+++ ++.+|++.++. + +++++|++++||||||.+++.+++++|+
T Consensus 97 ~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~-~~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~~l~~l~ 173 (354)
T PRK04635 97 FCEPGQDSIACFGPTYGMYAISAETFNVGVKALPLTA-DYQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRADIEQLI 173 (354)
T ss_pred hcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCC-CCCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHHHHHHHH
Confidence 99999 9999999999999999999999999999974 68899998874 4 6899999999999999999999999999
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCc
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~ 348 (434)
+.|+ +++||+||+|.+|.... +...+....+++++++||||.+|++|+|+||+++++++++.+.... ..++.+
T Consensus 174 ~~~~--~~~vivDeay~~~~~~~---s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~~~l~~~~--~~~~~~ 246 (354)
T PRK04635 174 EMTP--DAIVVVDEAYIEFCPEY---SVADLLASYPNLVVLRTLSKAFALAGARCGFTLANEELIEILMRVI--APYPVP 246 (354)
T ss_pred HhCC--CcEEEEeCchHhhccCc---chHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHHHHHHHhhc--CCCCCC
Confidence 8876 49999999999876331 2222333457899999999999999999999999999998887654 356778
Q ss_pred hHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCC-CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 349 TPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVG-FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 349 ~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
.+.|.++..+|.+. .+++++.++.++++|+.+.+.|++++ +.+.+++|+ |+|+++. +..++.+.| +++||.
T Consensus 247 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~-f~~~~~~-----~~~~~~~~l-~~~gv~ 319 (354)
T PRK04635 247 LPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVLEGNGN-YVLAKFD-----DVDAVFKAL-WDAGIV 319 (354)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCCCc-EEEEECC-----CHHHHHHHH-HHCCEE
Confidence 88898999999764 45677788889999999999999985 888877765 6777763 356776655 567999
Q ss_pred EECCC
Q 013883 427 AIPTS 431 (434)
Q Consensus 427 v~pG~ 431 (434)
+++++
T Consensus 320 v~~~~ 324 (354)
T PRK04635 320 ARAYK 324 (354)
T ss_pred EEECC
Confidence 98764
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=302.37 Aligned_cols=276 Identities=17% Similarity=0.259 Sum_probs=217.4
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.|+|+.|.+.++ |+.+.+++.+++.. ...|+. ...||++++++++ + +|++|+|+++++..++..
T Consensus 9 ~~i~l~~~~np~~-p~~~~~a~~~~~~~-~~~yp~---~~~l~~~ia~~~~---------~-~I~vt~G~~~al~~~~~~ 73 (311)
T PRK08354 9 GLIDFSASVNPYP-PEWLDEMFERAKEI-SGRYTY---YEWLEEEFSKLFG---------E-PIVITAGITEALYLIGIL 73 (311)
T ss_pred ceeEecCCCCCCC-CHHHHHHHHHHHHH-hhcCCC---hHHHHHHHHHHHC---------C-CEEECCCHHHHHHHHHHh
Confidence 6899999966665 57888888777554 456764 3678999998875 3 799999999999988754
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIAS 269 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~ 269 (434)
+.+||+|++++|+|+.|...++..|++++.+ .+|++.++++++ +++++++++||||||.+++.+++++|++
T Consensus 74 -~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~-------~~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~~ 144 (311)
T PRK08354 74 -ALRDRKVIIPRHTYGEYERVARFFAARIIKG-------PNDPEKLEELVE-RNSVVFFCNPNNPDGKFYNFKELKPLLD 144 (311)
T ss_pred -hCCCCeEEEeCCCcHHHHHHHHHcCCEEeec-------CCCHHHHHHhhc-CCCEEEEecCCCCCCCccCHHHHHHHHH
Confidence 4589999999999999999999999999765 357888988876 5788999999999999999999999999
Q ss_pred HHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCch
Q 013883 270 LCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATST 349 (434)
Q Consensus 270 la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~ 349 (434)
+|+++|+++|+||+|.+|.+++.. . .++++++++||||.||++|+|+||+++ +.+.++..+. .+..+.
T Consensus 145 ~a~~~~~~li~De~y~~f~~~~~~-----~--~~~~vi~~~S~SK~~~l~GlRiG~~v~---~~~~l~~~~~--~~~~~~ 212 (311)
T PRK08354 145 AVEDRNALLILDEAFIDFVKKPES-----P--EGENIIKLRTFTKSYGLPGIRVGYVKG---FEEAFRSVRM--PWSIGS 212 (311)
T ss_pred HhhhcCcEEEEeCcchhccccccc-----c--CCCcEEEEeccHhhcCCccceeeeeee---hHHHHHHcCC--CccCCH
Confidence 999999999999999999876421 1 157899999999999999999999998 5566665553 345566
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 350 PMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 350 ~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
+.+.++..++++..+++++.++.++++++.+.+.+ ..+++++|++ +++. ++.++++.|. ++||.+.|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l------~~~~~~~~~~-~~~~-----~~~~~~~~l~-~~gv~v~~ 279 (311)
T PRK08354 213 TGYAFLEFLIEDDFEHLRKTMPLIWREKERFEKAL------YVKSDANFFI-KDVG-----DAEKFVEFLK-RNGILVRD 279 (311)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc------CCCCCCcEEE-EECC-----CHHHHHHHHH-HCCeEEEe
Confidence 66777777776433455555666666665554444 2467788776 4542 4678888875 55999999
Q ss_pred CCCCC
Q 013883 430 TSVFY 434 (434)
Q Consensus 430 G~~F~ 434 (434)
|+.|.
T Consensus 280 g~~f~ 284 (311)
T PRK08354 280 CTSFG 284 (311)
T ss_pred cccCC
Confidence 99873
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=297.71 Aligned_cols=338 Identities=17% Similarity=0.211 Sum_probs=281.8
Q ss_pred cCCCcchhhhccCCchHHHHHhhhccccHHHHHHHHhhcCCeeEeCCC-CCCCCCcHHHHHHHHHHHHc-----CCCCCC
Q 013883 70 STNQSDTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQG-FPNFDGPDFVKDAAIQAIRD-----GKNQYA 143 (434)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g-~p~~~~~~~v~~~~~~~~~~-----~~~~Y~ 143 (434)
++-|++++.++.+++.++.+.+++++.+ .+|||+.| |.+..+.|.+++.++++-+. ..-+|.
T Consensus 25 ~s~~s~V~maPpDpILGVTeAfk~D~n~------------~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYl 92 (427)
T KOG1411|consen 25 SSWWSHVEMAPPDPILGVTEAFKKDPNP------------KKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYL 92 (427)
T ss_pred cchhhcCCCCCCCCcccHHHHHhcCCCc------------ceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchhc
Confidence 4578889999999999999999987754 89999999 89988888888777776442 346899
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEE-----cCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEE
Q 013883 144 RGHGVPEFNSAIASRFKKDSGLEVDPEKEVTV-----TSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKI 218 (434)
Q Consensus 144 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~-----t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~ 218 (434)
|+.|++|+.+..+++..+.....+..+ +|+. ++|+......++.. .-++..|++++|+|.+|..+++.+|+.+
T Consensus 93 pI~Gl~eF~k~sakLa~G~~s~~ik~~-Ri~tvQ~lSGTGaLriga~Fl~~-f~~~~~I~ip~PTWgNh~~if~~ag~~~ 170 (427)
T KOG1411|consen 93 PITGLAEFNKLSAKLALGDNSPVIKEK-RIVTVQTLSGTGALRVGAEFLAR-FYPSRDIYIPDPTWGNHKNIFKDAGLPV 170 (427)
T ss_pred cccchHHHHHHHHHHhhcCCchhhhcc-ceeEEEeccCcchhhHHHHHHHh-hccccceeecCCcccccCccccccCcce
Confidence 999999999999999887666556555 3443 34433333333333 3458899999999999999999999999
Q ss_pred EEEEcC-CCCCCCCHHHHHhhccc---CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC---
Q 013883 219 KCITLR-PPDFAIPIEELKSTISK---NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM--- 291 (434)
Q Consensus 219 ~~v~~~-~~~~~~d~~~l~~~i~~---~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~--- 291 (434)
..+.+. +.+.++|++.+.+.+.. +..++++.+.|||||+.++.|+|++|.++.++++++.|+|.+|++|..+.
T Consensus 171 ~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~ 250 (427)
T KOG1411|consen 171 KFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDK 250 (427)
T ss_pred eeeeeccccccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchh
Confidence 988875 46789999998888866 44566778899999999999999999999999999999999999998764
Q ss_pred CCccccCCCCCCCceEEEccCChhhccccceeeeEEe---C----hhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--
Q 013883 292 DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA---P----PHLTWGVRQAHSFLTFATSTPMQWAATAALRAP-- 362 (434)
Q Consensus 292 ~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~---~----~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~-- 362 (434)
+...++.+...+.++++++||+|++|++|.|+|.+.. + .++-++++.+.+.+..++|..+.++++.+|+++
T Consensus 251 DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l 330 (427)
T KOG1411|consen 251 DAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDL 330 (427)
T ss_pred hHHHHHHHHHcCCceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHH
Confidence 4567777877788999999999999999999997743 2 346678888999999999999999999999986
Q ss_pred -hHH---HHHHHHHHHHHHHHHHHHhhhCC----CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 363 -ETY---YEELKRDYSAKKAILVEGLNAVG----FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 363 -~~~---~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
.+| ++.|.+++..+|..|.+.|++.| |.++..+.|||+|..+.| +++++|.++++|+++
T Consensus 331 ~~~W~~evk~MadRi~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~p-------eQv~~l~ke~~iYmT 397 (427)
T KOG1411|consen 331 KNQWLGEVKGMADRIISMRQQLFDALEKEGSPGNWSHITKQIGMFCFTGLNP-------EQVDWLTKEYHIYLT 397 (427)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHhHHhhcCCCCccHHHHHHhhheeeecCCCH-------HHHHHHHhhheeeec
Confidence 345 45678999999999999998864 788899999999998843 788999999999998
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=303.67 Aligned_cols=278 Identities=21% Similarity=0.270 Sum_probs=224.6
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCC-CCCcEEEcCChHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVD-PEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~-~~~~i~~t~G~~~ai~~~~~ 188 (434)
+.|+|+.+.+.+++++..... .. ...|+... .+||++++++++ +. ++ +|++|+|+++++.++..
T Consensus 25 ~~i~ls~Nenp~~~~~~~~~~--~~----~~~Yp~~~--~~L~~~ia~~~~------~~~~~-~I~i~~Gs~e~i~~l~~ 89 (339)
T PRK06959 25 AWLDLSTGINPHGYPVPPVPA--DA----WRRLPEDD--DGLAACAARYYG------APDAA-HVLPVAGSQAAIRALPA 89 (339)
T ss_pred hhceeccCCCCCCCCCCCCCH--HH----HHhCCCch--HHHHHHHHHHhC------CCCcc-cEEECcCHHHHHHHHHH
Confidence 468999997666555211111 12 24587653 799999999886 43 46 89999999999997654
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
++++|| |++++|+|+.|...++..|++++.++.++ +.+ .+..+++++++||||||.+++.+++++|+
T Consensus 90 -~~~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~~-------~~~----~~~~~~v~l~nPnNPTG~~~s~~~l~~l~ 156 (339)
T PRK06959 90 -LLPRGR-VGIAPLAYSEYAPAFARHGHRVVPLDEAA-------DTL----PAALTHLIVVNPNNPTAERLPAARLLRWH 156 (339)
T ss_pred -hcCCCe-EEEcCCCcHHHHHHHHHCCCEEEeecccc-------hhc----cccCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 578877 88999999999999999999999887652 222 23457899999999999999999999999
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCc
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~ 348 (434)
+.|++++.++|+||+|.+|.+. .++..+. ..+++++++||||.||++|+|+||+++++++++++++.+. .++.+
T Consensus 157 ~~~~~~~~~vI~DEay~~~~~~---~s~~~~~-~~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li~~l~~~~~--~~~vs 230 (339)
T PRK06959 157 AQLAARGGTLIVDEAFADTLPA---ASLAAHT-DRPGLVVLRSVGKFFGLAGVRAGFVLAAPALLAALRDALG--AWTVS 230 (339)
T ss_pred HHHHHcCCEEEEECCCccCCCc---ccchhcc-CCCCEEEEecChhhcCCcchheEEEecCHHHHHHHHHhcC--CCCCc
Confidence 9999999999999999998643 2333333 2478999999999999999999999999999999988764 56678
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 349 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
.+.|.++..+|++ .++.++.++.++++|+.+.+.|+++|+.+. .+++|+|+++. +..++.++|.++ ||.|+
T Consensus 231 ~~~q~a~~~~L~~-~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~--~~~~f~~~~~~-----~~~~l~~~l~~~-GI~vr 301 (339)
T PRK06959 231 GPARHAVRAAFAD-AAWQAAMRERLAADGARLAALLRAHGFAVH--ATPLFSWTDDP-----RAAALHAALARR-GIWTR 301 (339)
T ss_pred HHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCCcc--CcceEEEEeCC-----CHHHHHHHHHhC-CeEEE
Confidence 8999999999986 568889999999999999999999998775 35688898763 366888888655 99997
Q ss_pred CC
Q 013883 429 PT 430 (434)
Q Consensus 429 pG 430 (434)
+.
T Consensus 302 ~~ 303 (339)
T PRK06959 302 YF 303 (339)
T ss_pred EC
Confidence 53
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=300.93 Aligned_cols=276 Identities=19% Similarity=0.301 Sum_probs=220.3
Q ss_pred CeeEeCCCCCCCCCc-HHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGP-DFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~-~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
+.|+|+.|+..++++ +.+.+ .++ ..|+... .+||++++++++ ++ +|++|+|+++++.+++
T Consensus 21 ~~i~l~~ne~p~~~~~~~~~~---~~~----~~yp~~~--~~Lr~~ia~~~~--------~~-~I~it~Gs~~al~~~~- 81 (330)
T PRK05664 21 DWLDLSTGIAPWPWPVPAIPA---DAW----ARLPETD--DGLEAAARAYYG--------AP-QLLPVAGSQAAIQALP- 81 (330)
T ss_pred HheeecCCcCCCCCCCcccCH---HHH----HhCCCCh--HHHHHHHHHHhC--------CC-CEEECcCHHHHHHHHH-
Confidence 569999995444433 22221 222 2476543 899999999986 45 8999999999999875
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
.+.+||+|++++|+|+.|...++..|++++.+|.+ .+++++ ++++++++++||||||.+++.+++++|+
T Consensus 82 -~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~~---------~~~~~~-~~~~~v~l~nP~NPTG~~~s~~~l~~l~ 150 (330)
T PRK05664 82 -RLRAPGRVGVLSPCYAEHAHAWRRAGHQVRELDEA---------EVEAAL-DSLDVLVVVNPNNPTGRRFDPARLLAWH 150 (330)
T ss_pred -HccCCCEEEEcCCChHHHHHHHHHcCCeEEEechh---------hHhhhh-cCCCEEEEeCCcCCCCCccCHHHHHHHH
Confidence 35899999999999999999999999999998754 344445 3678899999999999999999999999
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCc
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~ 348 (434)
++|+++|++||+||+|.++.. ..++..+. ..+++++++||||.+|++|+|+||+++++++++.+..... .++.+
T Consensus 151 ~~~~~~~~~iI~DE~y~~~~~---~~s~~~~~-~~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~~~~~~~~--~~~~~ 224 (330)
T PRK05664 151 ARLAARGGWLVVDEAFMDNTP---QHSLAACA-HRPGLIVLRSFGKFFGLAGARLGFVLAEPALLRALAELLG--PWTVS 224 (330)
T ss_pred HHHHhcCCEEEEECCcccCCC---cccccccc-cCCCEEEEeeccccccCCCcceEEEEeCHHHHHHHHHhcC--CCCCC
Confidence 999999999999999987641 23444444 3578999999999999999999999999999998887654 45678
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 349 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
.+.|.++..+|.+. ++.+++++.++++++.+.+.|++.|+... +...+|+|+.+. ++.++++.|. ++||.|.
T Consensus 225 ~~~~~~~~~~L~~~-~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~~~~~f~~~~~~-----~~~~~~~~l~-~~gi~v~ 296 (330)
T PRK05664 225 GPTRWLAQAALADT-PWQRRQRERLLAASQRLAALLRRHGLTPA-GGCALFQWVRTE-----DAAALHEFLA-RRGILTR 296 (330)
T ss_pred HHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHCCCccc-CCcceEEEEecC-----CHHHHHHHHH-HCCeEEE
Confidence 89999999999874 56788899999999999999999886432 222367787652 4678888775 5599997
Q ss_pred C
Q 013883 429 P 429 (434)
Q Consensus 429 p 429 (434)
+
T Consensus 297 ~ 297 (330)
T PRK05664 297 L 297 (330)
T ss_pred E
Confidence 5
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=304.85 Aligned_cols=308 Identities=19% Similarity=0.186 Sum_probs=245.6
Q ss_pred hcCCeeEeCCCCC--CCCCcH---HHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 107 IKHGAINLGQGFP--NFDGPD---FVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 107 ~~~~~i~l~~g~p--~~~~~~---~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
.+.++|+|.+|.| |+++++ .+.+++.+++..+...|.+..|+++||++++++++ .+ ++++|+|+++
T Consensus 34 ~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g~~~Y~~~~g~~~Lreaia~~~~--------~~-~vv~t~ggt~ 104 (460)
T PRK13238 34 AGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRGDEAYAGSRSYYRLEDAVKDIFG--------YP-YTIPTHQGRA 104 (460)
T ss_pred cCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhCCcccCCCCCHHHHHHHHHHHhC--------CC-cEEECCCHHH
Confidence 3458999999988 788766 57888888887777889999999999999999997 34 7999999999
Q ss_pred HHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-------CCC--CCCHHHHHhhccc----CCcEEEe
Q 013883 182 AIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-------PDF--AIPIEELKSTISK----NTRAILM 248 (434)
Q Consensus 182 ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-------~~~--~~d~~~l~~~i~~----~~~~i~~ 248 (434)
++.+++.++++||| |++++|.|..|...+...|++++.+++++ +++ .+|++.|++++++ ++++|++
T Consensus 105 A~~~~~~all~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl 183 (460)
T PRK13238 105 AEQILFPVLIKKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVM 183 (460)
T ss_pred HHHHHHHHhCCCCC-EEccCCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEE
Confidence 99999999999999 99999999999999999999999999863 134 4999999999984 6899999
Q ss_pred cCCCCCcc-cCCCHHHHHHHHHHHHHcCcEEEEcCcCC--ccccCC------CCccccCCCCCCCceEEEccCChhhccc
Q 013883 249 NTPHNPTG-KMFTREELNVIASLCIENDVLVFSDEVYD--KLAFEM------DHISIASLPGMYERTVTMNSLGKTFSLT 319 (434)
Q Consensus 249 ~~p~NPTG-~~~~~e~l~~i~~la~~~~~~iI~Deay~--~~~~~~------~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 319 (434)
++|+|||| .+++.+++++|.++|++||++||+|+++. ...|.. ...++..+ +..+.|++|.+.++
T Consensus 184 ~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i------~~~~~s~~D~~~~S 257 (460)
T PRK13238 184 TITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEI------AREMFSYADGLTMS 257 (460)
T ss_pred ecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHH------hhhhcccCcEEEEe
Confidence 99999997 99999999999999999999999999763 233321 11121111 23456777777777
Q ss_pred ccee------eeEEeC-hhhHHHHHHHh----hccccCCchH-HHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHhh
Q 013883 320 GWKI------GWAIAP-PHLTWGVRQAH----SFLTFATSTP-MQWAATAALRA--PETYYEELKRDYSAKKAILVEGLN 385 (434)
Q Consensus 320 G~R~------G~~~~~-~~~~~~l~~~~----~~~~~~~~~~-~q~a~~~~L~~--~~~~~~~~~~~~~~~~~~l~~~L~ 385 (434)
|+|+ |+++++ +++.+.++... .+.+++.... .|.|++..|.+ .+++++.+++ ++++|.+.|+
T Consensus 258 g~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~----~~~~l~~~L~ 333 (460)
T PRK13238 258 AKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIG----QVEYLGEGLE 333 (460)
T ss_pred cccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHH----HHHHHHHHHH
Confidence 7775 366666 57877777663 3345555444 48888877875 3455554433 5799999999
Q ss_pred hCCCEeecCCeeEEEeeecCCCC------CCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 386 AVGFKVFPSSGTYFVVVDHTPFG------HETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+.|+++..|.|+||+++++..+. .-++.+|+.+|+++.||.+.|++.||
T Consensus 334 ~~G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~ 388 (460)
T PRK13238 334 EAGVPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLL 388 (460)
T ss_pred HCCCCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeeccccee
Confidence 99999999999999999986531 11367899999999999999999886
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=277.04 Aligned_cols=340 Identities=17% Similarity=0.192 Sum_probs=279.0
Q ss_pred CCCcchhhhccCCchHHHHHhhhccccHHHHHHHHhhcCCeeEeCCC-CCCCCCcHHHHHHHHHHHHc------CCCCCC
Q 013883 71 TNQSDTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQG-FPNFDGPDFVKDAAIQAIRD------GKNQYA 143 (434)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g-~p~~~~~~~v~~~~~~~~~~------~~~~Y~ 143 (434)
+.|.+.+.++....+.+.+++.++.. +.++||++| |.+....||+++.++++-.. .+++|.
T Consensus 4 s~f~~I~~a~p~~vf~~~~~y~~d~~------------p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYL 71 (410)
T KOG1412|consen 4 SFFANIPVAPPIEVFKLNASYGEDLD------------PVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYL 71 (410)
T ss_pred chhcCCccCChHHHHhhHHHhcccCC------------cceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhc
Confidence 35666777777777777777766543 378999999 88889999998888776332 358999
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCCCCC----cEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcC-CEE
Q 013883 144 RGHGVPEFNSAIASRFKKDSGLEVDPEK----EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAG-AKI 218 (434)
Q Consensus 144 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~----~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G-~~~ 218 (434)
|..|++.++++.++.+.+.....+.+++ +-+.++|+...-.-++..++. ..+|++.+|+|.+|..+++..| ..+
T Consensus 72 pi~Gl~~F~~~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~-~~~VY~SnPTW~nH~~if~~aGf~tv 150 (410)
T KOG1412|consen 72 PILGLPTFTKAATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYN-KNTVYVSNPTWENHHAIFEKAGFTTV 150 (410)
T ss_pred cccCchhhhhhhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcc-cceeEecCCchhHHHHHHHHcCCcee
Confidence 9999999999999998877777777664 334445544444455555666 4579999999999999999999 567
Q ss_pred EEEEcCC-CCCCCCHHHHHhhccc---CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC---
Q 013883 219 KCITLRP-PDFAIPIEELKSTISK---NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM--- 291 (434)
Q Consensus 219 ~~v~~~~-~~~~~d~~~l~~~i~~---~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~--- 291 (434)
..+++-+ ++..+|++.+...++. +...|+..|.|||||..++.|+|++|+++.++++++.++|-+|++|+.++
T Consensus 151 ~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~ 230 (410)
T KOG1412|consen 151 ATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDA 230 (410)
T ss_pred eeeeeecCCCceecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccc
Confidence 7788754 6788999999998876 33445567889999999999999999999999999999999999999775
Q ss_pred CCccccCCCCCCCceEEEccCChhhccccceeeeEEe-------ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--
Q 013883 292 DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA-------PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP-- 362 (434)
Q Consensus 292 ~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~-------~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~-- 362 (434)
+.+.++.+...+..+++++||+|+||+++.|+|.+.. .+.+.+++..+.+...++++..+.++++..|+.+
T Consensus 231 DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~l 310 (410)
T KOG1412|consen 231 DAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPEL 310 (410)
T ss_pred cHHHHHHHHhcCCeEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHH
Confidence 5677888887778899999999999999999998764 2456678888888888999999999999999986
Q ss_pred -hHH---HHHHHHHHHHHHHHHHHHhhhCC----CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 363 -ETY---YEELKRDYSAKKAILVEGLNAVG----FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 363 -~~~---~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
++| ++.+..|++++|..|++.|..++ |+++..|.|||.+.++.+ ..++.|.++++|++.+-
T Consensus 311 re~W~~sik~MssRI~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyTGLtp-------~qV~~li~~h~vyLl~~ 379 (410)
T KOG1412|consen 311 REQWIQSIKTMSSRIKKMRTALRDHLVALKTPGTWDHITQQIGMFSYTGLTP-------AQVDHLIENHKVYLLSD 379 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHhhccceeecCCCH-------HHHHHHHHhceEEEecC
Confidence 344 55678899999999999998873 899999999999998843 78899999999998763
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=280.49 Aligned_cols=317 Identities=36% Similarity=0.575 Sum_probs=263.3
Q ss_pred eEeCCCCCCCCCcHHHHHHHHHH-HHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc
Q 013883 112 INLGQGFPNFDGPDFVKDAAIQA-IRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL 190 (434)
Q Consensus 112 i~l~~g~p~~~~~~~v~~~~~~~-~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l 190 (434)
+||+.|.+++...+.+.+...+. .......|.+..|..++++.++++++..++....++ ++++++|+++++..++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~~~~~~~t~a~~~~~~~~ 79 (350)
T cd00609 1 IDLSIGEPDFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPE-EIVVTNGAQEALSLLLRAL 79 (350)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcc-eEEEecCcHHHHHHHHHHh
Confidence 57888977777777666655542 222446788889999999999999998877655566 8999999999999999999
Q ss_pred cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCH--HHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 191 INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPI--EELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 191 ~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~--~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
.++||+|++++|+|.++...++..|.+++.++.++ ++..+. +.++....+++++|++++|+||||.+++.+++++|+
T Consensus 80 ~~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~ 158 (350)
T cd00609 80 LNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDE-EGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELA 158 (350)
T ss_pred CCCCCEEEEcCCCchhHHHHHHHCCCEEEEEeccc-ccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHH
Confidence 99999999999999999999999999999999875 333333 667777778899999999999999999999999999
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeCh-hhHHHHHHHhhccccCC
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP-HLTWGVRQAHSFLTFAT 347 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~-~~~~~l~~~~~~~~~~~ 347 (434)
++|+++|+++|+|++|.++.+.+............+.+++++|++|.++++|.|+||+++++ ++.+.++.......+++
T Consensus 159 ~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~ 238 (350)
T cd00609 159 ELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGP 238 (350)
T ss_pred HHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHHhcccCC
Confidence 99999999999999999988765433211223345678999999999998999999999998 89999988887777889
Q ss_pred chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEe-ecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 348 STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKV-FPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 348 ~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
+...+.++..+|+...++.+++++++.++++.+.+.|++.++.. ..+.+++++|+.+... ...+++.++++++||.
T Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~l~~~gi~ 315 (350)
T cd00609 239 STLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEG---DDEEFLERLLLEAGVV 315 (350)
T ss_pred ChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCC---ChHHHHHHHHHhCCEE
Confidence 99999999999998656788889999999999999999986554 5667888999887432 2455666677788999
Q ss_pred EECCCCC
Q 013883 427 AIPTSVF 433 (434)
Q Consensus 427 v~pG~~F 433 (434)
+.++..|
T Consensus 316 i~~~~~~ 322 (350)
T cd00609 316 VRPGSAF 322 (350)
T ss_pred Eeccccc
Confidence 9998766
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=277.53 Aligned_cols=290 Identities=22% Similarity=0.275 Sum_probs=238.2
Q ss_pred CCCCCCCCCcHHHHHHHHHHHH-hhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCE
Q 013883 139 KNQYARGHGVPEFNSAIASRFK-KDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAK 217 (434)
Q Consensus 139 ~~~Y~~~~G~~~lr~~ia~~l~-~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~ 217 (434)
..+|++.+|+++|...+.++.. ..+..... +.+|++|+|.+.+++.+++.++++||.|+++..+|....+.++..|++
T Consensus 93 alQYg~s~G~peLl~fik~h~~~~ih~p~~~-~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~gv~ 171 (472)
T KOG0634|consen 93 ALQYGQSSGIPELLLFIKDHNRPTIHAPPYK-NWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEALGVK 171 (472)
T ss_pred hhccccccCcHHHHHHHHHhccccccCCCCC-CceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhccccCce
Confidence 3589999999999999988655 23333333 348999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCHHHHHhhccc---------CCcEEEec--CCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCc
Q 013883 218 IKCITLRPPDFAIPIEELKSTISK---------NTRAILMN--TPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDK 286 (434)
Q Consensus 218 ~~~v~~~~~~~~~d~~~l~~~i~~---------~~~~i~~~--~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~ 286 (434)
++.|+++ ..++++|.|++.+.. ++ -|+.+ +-+||||..++.|..++|.++|++||++||+||.|..
T Consensus 172 ~ipv~md--~~Gi~pE~l~~il~~w~~~~~k~~~p-~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~ 248 (472)
T KOG0634|consen 172 IIPVKMD--QDGIDPESLEEILSNWKPGSYKKPKP-HVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYF 248 (472)
T ss_pred EEecccc--CCCCCHHHHHHHHhcCCcccccCCCC-eEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccce
Confidence 9888887 578899999987743 23 34444 4499999999999999999999999999999999999
Q ss_pred cccCC---C----C-------------ccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccC
Q 013883 287 LAFEM---D----H-------------ISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA 346 (434)
Q Consensus 287 ~~~~~---~----~-------------~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~ 346 (434)
+.++. . . .++.++ +..++||...||||.++ ||.|+||+.+++.+++++-......+.+
T Consensus 249 Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflsl-DtdGrVIr~dSFSKiia-PGlRlG~it~~~~~l~ril~~ae~~t~~ 326 (472)
T KOG0634|consen 249 LQMNTYNPSLELESPAHSSSMFLKSLVPSFLSL-DTDGRVIRNDSFSKIIA-PGLRLGWITGNSLFLKRILDLAEVATSG 326 (472)
T ss_pred eeccccCCCccccCccccHHHHHHhhcCCcccc-cccccEEeccchhhhhc-CcceeEEeecCHHHHHHHhhhcceeecC
Confidence 98762 1 0 111122 23579999999999999 9999999999999998887777777888
Q ss_pred CchHHHHHHHHHHhCC-----hHHHHHHHHHHHHHHHHHHHHhhhC---C-CEeecCCeeEEEeeecCC------CCCCC
Q 013883 347 TSTPMQWAATAALRAP-----ETYYEELKRDYSAKKAILVEGLNAV---G-FKVFPSSGTYFVVVDHTP------FGHET 411 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~---g-~~~~~~~~~~~~~~~~~~------~~~~~ 411 (434)
++...|.++.+.|+.. .+|+.+++..|..|++++..+|.+. + +.+.+|.+|||+|+.++- .....
T Consensus 327 pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q 406 (472)
T KOG0634|consen 327 PSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQ 406 (472)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHH
Confidence 9999999999999873 3789999999999999999999884 4 678899999999999851 12211
Q ss_pred HHHHHHHHHHhcCeEEECCCCCC
Q 013883 412 DIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 412 ~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
-+++....+.+.||.+++|..|.
T Consensus 407 ~~e~i~~~~vk~gV~~v~G~~F~ 429 (472)
T KOG0634|consen 407 IEEIIFIKAVKNGVKLVCGSWFM 429 (472)
T ss_pred HHHHHHHHHHHCCeEEecCceeE
Confidence 34455555567799999999984
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=259.33 Aligned_cols=320 Identities=22% Similarity=0.308 Sum_probs=244.5
Q ss_pred hcCCeeEeCCCCCCCCC--cHHHHHHHHHHHHcC-----CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCCh
Q 013883 107 IKHGAINLGQGFPNFDG--PDFVKDAAIQAIRDG-----KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGC 179 (434)
Q Consensus 107 ~~~~~i~l~~g~p~~~~--~~~v~~~~~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~ 179 (434)
..++.|+|+.|+|..-| ....++...+.+.++ ...|..++|...|.++++..+++.+|+++++. +|.+|+|+
T Consensus 28 rt~g~imLggGNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~-NIalTnGS 106 (417)
T COG3977 28 RTPGAIMLGGGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQ-NIALTNGS 106 (417)
T ss_pred cCCCceeeCCCCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccc-eeeecCCc
Confidence 34579999999986443 334555555665553 46899999999999999999999999999998 89999999
Q ss_pred HHHHHHHHHHccC---CC--CeEEEc-CCCchhHHHHHH------HcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEE
Q 013883 180 TEAIAATILGLIN---PG--DEVILF-APFYDSYEATLS------MAGAKIKCITLRPPDFAIPIEELKSTISKNTRAIL 247 (434)
Q Consensus 180 ~~ai~~~~~~l~~---~g--d~Vlv~-~p~y~~~~~~~~------~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~ 247 (434)
+.+++-++..|.. .| ..|+++ .|.|-+|.++.. .+.-++.-++-..=.+.+|++.+. +.+.+.+|+
T Consensus 107 Qs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~e~~g~ic 184 (417)
T COG3977 107 QSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLH--IGESTGAIC 184 (417)
T ss_pred cchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeeccCCcccccccceeeccCHHHcc--cccccceEE
Confidence 9999988887742 34 346664 789998876421 111112111111013568888886 557889999
Q ss_pred ecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEE
Q 013883 248 MNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI 327 (434)
Q Consensus 248 ~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~ 327 (434)
++-|.||||.+++.|++.+|.++|++||+.+|+|.+|..-.-+-.+.... +-+.+|++.+.|+|| +|+||.|+|.++
T Consensus 185 ~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~--~~w~~NiilC~SLSK-~GLPG~R~GIiI 261 (417)
T COG3977 185 VSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDAT--PLWNENIILCMSLSK-LGLPGSRCGIII 261 (417)
T ss_pred ecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceeccccc--ccCCCCEEEEeehhh-cCCCCcceeEEE
Confidence 99999999999999999999999999999999999998522111111111 235789999999999 699999999999
Q ss_pred eChhhHHHHHHHhhccccCCchHHHHHHHHHHhCCh--HHHHHH-HHHHHHHHH----HHHHHhhhCCCEeecCCeeEEE
Q 013883 328 APPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPE--TYYEEL-KRDYSAKKA----ILVEGLNAVGFKVFPSSGTYFV 400 (434)
Q Consensus 328 ~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~--~~~~~~-~~~~~~~~~----~l~~~L~~~g~~~~~~~~~~~~ 400 (434)
++++++..+..........+..+++++++.+++..+ +.-+++ +.-|+.+.. .+++.|-+..|.+.+++|..|+
T Consensus 262 ane~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFl 341 (417)
T COG3977 262 ANEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFL 341 (417)
T ss_pred ccHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceeeecCCcceee
Confidence 999999999998888889999999999999999863 222222 344555544 4444455557888899999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 401 VVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
|+.+...++ ++.++.++|. +.||.|+||+.||
T Consensus 342 WLWf~dLPI-tt~~LYq~LK-a~Gvl~VPG~~FF 373 (417)
T COG3977 342 WLWFKDLPI-TTEELYQRLK-ARGVLMVPGHYFF 373 (417)
T ss_pred hhhhccCCC-CHHHHHHHHH-hCeEEEecccccC
Confidence 998877777 5888998885 5599999999997
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=256.25 Aligned_cols=339 Identities=21% Similarity=0.388 Sum_probs=269.4
Q ss_pred HHHhhhccccHHHHHHHHhhcCCeeEeCCCCCCCCCcHHHHHHHHHHHHc---CCCCCCCCCCcHHHHHHHHHHHHhhcC
Q 013883 88 AKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRD---GKNQYARGHGVPEFNSAIASRFKKDSG 164 (434)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g 164 (434)
.+.+.+.|-.+++++..+...+..+|= |. -|..+.+.....+.. ....|+.++|++-+|+.+|+++.+++|
T Consensus 58 pqamgQ~PiTF~RQvlal~~~p~lLd~----~~--fp~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG 131 (475)
T KOG0258|consen 58 PQAMGQKPITFLRQVLALCQYPELLDS----PE--FPTDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDG 131 (475)
T ss_pred HHHhCCCChhHHHHHHHHhcChhhcCC----CC--CCHHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccC
Confidence 355666677777888777777766542 22 345555555555554 235799999999999999999999999
Q ss_pred CCCCCCCcEEEcCChHHHHHHHHHHcc-CCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhccc-
Q 013883 165 LEVDPEKEVTVTSGCTEAIAATILGLI-NPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISK- 241 (434)
Q Consensus 165 ~~~~~~~~i~~t~G~~~ai~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~- 241 (434)
.+.+|+ +|++|+|++.++..++..++ .++|.|++|-|.|+-|...+..+|+..+.+.+++ .+|.+|.++|++.+.+
T Consensus 132 ~p~~p~-dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA 210 (475)
T KOG0258|consen 132 IPADPE-DIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEA 210 (475)
T ss_pred CCCCHH-HeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHH
Confidence 889999 89999999999999998886 5678999999999999999999999999999987 5799999999987754
Q ss_pred ----CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC--CccccC----CCCCC---CceEE
Q 013883 242 ----NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD--HISIAS----LPGMY---ERTVT 308 (434)
Q Consensus 242 ----~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~--~~~~~~----~~~~~---~~~i~ 308 (434)
+++++++.||.||||.+++.|.+++|+.+|.+++++++.||+|++-.|..+ +.++.. +...+ -.++.
T Consensus 211 ~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~S 290 (475)
T KOG0258|consen 211 RKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLAS 290 (475)
T ss_pred hccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEe
Confidence 688999999999999999999999999999999999999999999998763 333322 21111 23567
Q ss_pred EccCChhh-ccccceeeeEEe---ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC-------hH---HHHHHHHHHH
Q 013883 309 MNSLGKTF-SLTGWKIGWAIA---PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP-------ET---YYEELKRDYS 374 (434)
Q Consensus 309 i~S~SK~~-g~~G~R~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~-------~~---~~~~~~~~~~ 374 (434)
+.|.||.+ |-.|.|-||+-. ++++.+++.++.. ...+++..+|..+-...+-+ +. ..+.....++
T Consensus 291 fhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~s-i~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~ 369 (475)
T KOG0258|consen 291 FHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLAS-IKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLR 369 (475)
T ss_pred eecccccceeeecccCCeeecccCChhHHHHHHHHHh-hhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHH
Confidence 78999998 668999999875 4666666655443 34677888888877777653 11 2334567788
Q ss_pred HHHHHHHHHhhhC-CCEeecCCeeEEEeeecCC----------CCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 375 AKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTP----------FGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 375 ~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
++.+.+.+.++.+ |+.+.+++|.||.|..+.- .+...++-.+.+||+..||.++||++|.
T Consensus 370 ~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFG 440 (475)
T KOG0258|consen 370 SRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFG 440 (475)
T ss_pred HHhHHHHHHHhhcCceeeccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCC
Confidence 8888999999987 9999999999999876421 1444667788999999999999999995
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=264.16 Aligned_cols=305 Identities=19% Similarity=0.176 Sum_probs=233.9
Q ss_pred hcCCeeEeCCCCC--CCCCcH---HHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 107 IKHGAINLGQGFP--NFDGPD---FVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 107 ~~~~~i~l~~g~p--~~~~~~---~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
.+.+.++|..+.+ |+..+. .+.++...++..+...|.+..|+++|+++++++++ .+ ++++++|+++
T Consensus 9 ~g~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~~gd~~Y~~~~g~~~Leeaia~~~g--------~~-~vv~t~~Gt~ 79 (431)
T cd00617 9 AGYNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMMLGDEAYAGSKSFYDLEDAVQDLFG--------FK-HIIPTHQGRG 79 (431)
T ss_pred cCCCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHhCCCccCCCCCHHHHHHHHHHHHC--------CC-eEEEcCCHHH
Confidence 3458899999988 777664 56666667777777789999999999999999997 34 7999999999
Q ss_pred HHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC---------CCCCCHHHHHhhcccC----CcEEEe
Q 013883 182 AIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP---------DFAIPIEELKSTISKN----TRAILM 248 (434)
Q Consensus 182 ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~---------~~~~d~~~l~~~i~~~----~~~i~~ 248 (434)
|+.+++.++++|||+| +++|.|..+...+...|++++.++++++ .+.+|++.|+++++++ +++|++
T Consensus 80 Al~la~~al~~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v 158 (431)
T cd00617 80 AENILFSILLKPGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVL 158 (431)
T ss_pred HHHHHHHHhCCCCCEE-ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEE
Confidence 9999999999999988 6899999999999999999999999742 2459999999999865 788999
Q ss_pred cCCCCCc-ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCc--cccC-----C-CCccccCCCCCCCceEEEccCChhhccc
Q 013883 249 NTPHNPT-GKMFTREELNVIASLCIENDVLVFSDEVYDK--LAFE-----M-DHISIASLPGMYERTVTMNSLGKTFSLT 319 (434)
Q Consensus 249 ~~p~NPT-G~~~~~e~l~~i~~la~~~~~~iI~Deay~~--~~~~-----~-~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 319 (434)
++|+||+ |.+++.+++++|.++|++||++||+|++... ..+. + ...++. +.++.+.|++|.+.+.
T Consensus 159 ~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~------ei~~e~~s~sd~~~mS 232 (431)
T cd00617 159 TITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIA------EIAREMFSYADGCTMS 232 (431)
T ss_pred ECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHH------HHHHHhhccCCEEEEE
Confidence 9999998 9999999999999999999999999999432 1121 1 111221 2234577888988888
Q ss_pred cce------eeeEEeCh-hhHHHHHHHh----hccccCCchHHH-HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC
Q 013883 320 GWK------IGWAIAPP-HLTWGVRQAH----SFLTFATSTPMQ-WAATAALRAPETYYEELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 320 G~R------~G~~~~~~-~~~~~l~~~~----~~~~~~~~~~~q-~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (434)
|+| .||++++. +++++++... ...+++.-...+ .+++..|++..+ .+.+.++++ +++++.+.|++.
T Consensus 233 ~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~-~~~l~~~~~-~r~~l~~~L~~~ 310 (431)
T cd00617 233 AKKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVE-EDYLRHRVE-QVRYLGDRLDEA 310 (431)
T ss_pred eecCCCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhccc-HHHHHHHHH-HHHHHHHHHHHC
Confidence 888 67999986 5887776422 111222222223 333446655311 233344444 559999999999
Q ss_pred CCEeecCCeeEEEeeecCCCC------CCCHHHHHHHHHHhcCeEEEC
Q 013883 388 GFKVFPSSGTYFVVVDHTPFG------HETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Ll~~~GV~v~p 429 (434)
||++..|.|++++|++...+. .-++.+|+.+|+++.||.++-
T Consensus 311 G~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~ 358 (431)
T cd00617 311 GVPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVE 358 (431)
T ss_pred CCCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEe
Confidence 999999999999999976431 114789999999999999764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=245.28 Aligned_cols=282 Identities=18% Similarity=0.260 Sum_probs=217.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCe
Q 013883 117 GFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDE 196 (434)
Q Consensus 117 g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~ 196 (434)
+|.++...|.+.++..+++.. |. |..++.+.+.+.+.+.+|. +++ ++++++|+.+++..++.+++++||.
T Consensus 28 ~ylgl~~~~~~~~~~~~~~~~----~~---g~~~~~~~Le~~lA~~~g~--~~e-~ilv~~gg~~a~~~~~~al~~~gd~ 97 (346)
T TIGR03576 28 DLTGLAGGFKIDEEDLELLET----YV---GPAIFEEKVQELGREHLGG--PEE-KILVFNRTSSAILATILALEPPGRK 97 (346)
T ss_pred ccccCCCChhHHHHHHHHHHH----hc---CCHHHHHHHHHHHHHHcCC--Ccc-eEEEECCHHHHHHHHHHHhCCCCCE
Confidence 466777889999988888765 32 4456666666666655554 566 8999999999999999999999999
Q ss_pred EEEc---CCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHH
Q 013883 197 VILF---APFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIE 273 (434)
Q Consensus 197 Vlv~---~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~ 273 (434)
|+++ .|+|..|...++..|++++.+ . |++.++. .+++++|++ +++||+|.+++.+++++|+++|++
T Consensus 98 Vli~~~d~p~~~s~~~~~~l~ga~~~~~--~------~l~~l~~--~~~~~lIii-tg~s~~G~v~~~~~L~~i~~la~~ 166 (346)
T TIGR03576 98 VVHYLPEKPAHPSIPRSCKLAGAEYFES--D------ELSELKK--IDGTSLVVI-TGSTMDLKVVSEEDLKRVIKQAKS 166 (346)
T ss_pred EEECCCCCCCchhHHHHHHHcCCEEecc--C------CHHHHhh--CcCceEEEE-ECCCCCCcccCHHHHHHHHHHHHH
Confidence 9975 579999999999999986432 1 4555433 246777777 457999999999999999999999
Q ss_pred cCcEEEEcCcCCccccCC-CCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHH
Q 013883 274 NDVLVFSDEVYDKLAFEM-DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQ 352 (434)
Q Consensus 274 ~~~~iI~Deay~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q 352 (434)
+|+++|+||+|..+..+. .......+ +..+++.|||| +++|+|+||+++++++++.+++..+...++.+++.|
T Consensus 167 ~~~~livDEAy~~~~~~~~~~~~~~~~----~~divv~s~SK--alaG~r~G~v~~~~~li~~l~~~~~~~~~s~~~~~~ 240 (346)
T TIGR03576 167 KEAIVLVDDASGARVRRLYGQPPALDL----GADLVVTSTDK--LMDGPRGGLLAGRKELVDKIKSVGEQFGLEAQAPLL 240 (346)
T ss_pred cCCEEEEECCccccccccCCCCCHHHc----CCcEEEeccch--hccccceEEEEeCHHHHHHHHHhhcCcccCccHHHH
Confidence 999999999999865331 11111111 12366779999 568999999999999999999988777777888899
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 353 WAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 353 ~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
.++..+|+... .+.+++.++++++.+.+.+++ +.+.++.++ |+|+++.. .++.+++.++++++||.++||+.
T Consensus 241 ~aa~~aL~~~~--~~~~~~~l~~r~~~~~~~l~~--~~~~~~~~~-f~~~~~~~---~~~~~~~~~ll~~~gV~v~~~~~ 312 (346)
T TIGR03576 241 AAVVRALEEFE--LSRIRDAFKRKEEVYLRLFDK--LNVERTPTG-FVIKGVEE---EKLIEIGLDLLRNYGIITITAVG 312 (346)
T ss_pred HHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHh--CCCCcCCCe-EEEEeCCC---CCHHHHHHHHHHhCCEEEeCCcc
Confidence 99999997643 356678888888888888874 455555666 68888743 13567888999999999999987
Q ss_pred C
Q 013883 433 F 433 (434)
Q Consensus 433 F 433 (434)
|
T Consensus 313 f 313 (346)
T TIGR03576 313 M 313 (346)
T ss_pred c
Confidence 6
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=253.38 Aligned_cols=297 Identities=19% Similarity=0.184 Sum_probs=220.5
Q ss_pred hcCCeeEeCCCC-CCCCCcHHHHHHHHHHHHcCCCCCCCCC---Cc----HHHHHHHHHHHHhhcCCCCCCCCcEEEcCC
Q 013883 107 IKHGAINLGQGF-PNFDGPDFVKDAAIQAIRDGKNQYARGH---GV----PEFNSAIASRFKKDSGLEVDPEKEVTVTSG 178 (434)
Q Consensus 107 ~~~~~i~l~~g~-p~~~~~~~v~~~~~~~~~~~~~~Y~~~~---G~----~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G 178 (434)
.+.++|||+.|. ++++++|.+.+++.+++.+....|++.. |. .+|+++++++++ .+ ++++++|
T Consensus 36 ~g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g--------~~-~~ii~~~ 106 (393)
T TIGR01822 36 DGREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLG--------TE-DTILYAS 106 (393)
T ss_pred CCceEEEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC--------CC-cEEEECc
Confidence 345789999994 6999999999999999877434677666 76 678888888876 24 5677788
Q ss_pred hHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc------CCcEEEecCCC
Q 013883 179 CTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK------NTRAILMNTPH 252 (434)
Q Consensus 179 ~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~i~~~~p~ 252 (434)
+++++..++.+++++||+|++++|.|+.+...+...+.+.+.++ ..|++.+++++++ ++++|++.+++
T Consensus 107 ~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~------~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~ 180 (393)
T TIGR01822 107 CFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYA------NNDMADLEAQLKEARAAGARHRLIATDGVF 180 (393)
T ss_pred hHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeC------CCCHHHHHHHHHhhhhcCCCceEEEEeCCc
Confidence 89999999999999999999999999999999888888775543 3588999988874 67788888899
Q ss_pred CCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCC-CCCceEEEccCChhhccccceeeeEEeChh
Q 013883 253 NPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPG-MYERTVTMNSLGKTFSLTGWKIGWAIAPPH 331 (434)
Q Consensus 253 NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~-~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~ 331 (434)
||||.+.+ +++|+++|++||+++|+||+|....++..........+ ..+.++++.|+||.++ |+|+||++++++
T Consensus 181 ~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~--g~r~G~~~~~~~ 255 (393)
T TIGR01822 181 SMDGVIAP---LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALG--GASGGFTTARKE 255 (393)
T ss_pred cCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhh--CCCcEEEEeCHH
Confidence 99999875 67799999999999999999964333222212111111 1245688999999875 789999999999
Q ss_pred hHHHHHHHhhccccC--CchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCC
Q 013883 332 LTWGVRQAHSFLTFA--TSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGH 409 (434)
Q Consensus 332 ~~~~l~~~~~~~~~~--~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (434)
+++.++.......++ .+...+.++..+|+.. +..++++++++++++++.+.|++.|+.+.++.+.++. +.+.+ .
T Consensus 256 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~-i~~~~--~ 331 (393)
T TIGR01822 256 VVELLRQRSRPYLFSNSLPPAVVGASIKVLEML-EASNELRDRLWANTRYFRERMEAAGFDIKPADHPIIP-VMLYD--A 331 (393)
T ss_pred HHHHHHHhCccceecCCCCHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEE-EEeCC--H
Confidence 998887643322222 2334445556666532 2345678899999999999999888887665555443 33221 1
Q ss_pred CCHHHHHHHHHHhcCeEEE
Q 013883 410 ETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 410 ~~~~~~~~~Ll~~~GV~v~ 428 (434)
.+..+++++|+++ ||.+.
T Consensus 332 ~~~~~l~~~L~~~-gI~v~ 349 (393)
T TIGR01822 332 VLAQRFARRLLEE-GIYVT 349 (393)
T ss_pred HHHHHHHHHHHHC-CeeEe
Confidence 1366888888766 99997
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=251.41 Aligned_cols=303 Identities=18% Similarity=0.166 Sum_probs=224.4
Q ss_pred hcCCeeEeCCCC-CCCCCcHHHHHHHHHHHHcCCCCCC---CCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 107 IKHGAINLGQGF-PNFDGPDFVKDAAIQAIRDGKNQYA---RGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 107 ~~~~~i~l~~g~-p~~~~~~~v~~~~~~~~~~~~~~Y~---~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
.+.+.|||+.|. |++++++.+.+++.+++.+....|. ...|..++++++++++.+.+|. ++ +|++++| +++
T Consensus 40 ~g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~---~~-~i~~tsG-~~a 114 (397)
T PRK06939 40 DGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGT---ED-AILYSSC-FDA 114 (397)
T ss_pred CCCeEEEeeccCccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCC---Cc-EEEEcCh-HHH
Confidence 355789999985 7998999999999998876333343 3468889999999999988874 34 7888888 778
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc------CCcEEEecCCCCCcc
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK------NTRAILMNTPHNPTG 256 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~i~~~~p~NPTG 256 (434)
+..++.+++++||+|++++|+|+.+...+...|++++.++. .|++.+++.+++ ++++|+....+|++|
T Consensus 115 ~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G 188 (397)
T PRK06939 115 NGGLFETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYAN------NDMADLEAQLKEAKEAGARHKLIATDGVFSMDG 188 (397)
T ss_pred HHHHHHHhCCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCC------CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCC
Confidence 88899999999999999999999999999999999887764 378888887753 567777767799999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCc-cccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHH
Q 013883 257 KMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHI-SIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG 335 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~-~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~ 335 (434)
... ++++|+++|++||++||+||+|....++.... ......-..+.+++++||||.++ |+|+||+++++++++.
T Consensus 189 ~~~---~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~--g~r~G~v~~~~~~~~~ 263 (397)
T PRK06939 189 DIA---PLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALG--GASGGYTAGRKEVIDW 263 (397)
T ss_pred CcC---CHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhC--ccCceEEEeCHHHHHH
Confidence 854 57889999999999999999996322221111 11111111245699999999995 5699999999999988
Q ss_pred HHHHhhcccc-CC-chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHH
Q 013883 336 VRQAHSFLTF-AT-STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDI 413 (434)
Q Consensus 336 l~~~~~~~~~-~~-~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (434)
+........+ +. +...+.++..+++... ..++++++++++++.+.+.|++.|+++.++.++++.+. +.. + .++.
T Consensus 264 l~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~-~~~-~-~~~~ 339 (397)
T PRK06939 264 LRQRSRPYLFSNSLAPAIVAASIKVLELLE-ESDELRDRLWENARYFREGMTAAGFTLGPGEHPIIPVM-LGD-A-KLAQ 339 (397)
T ss_pred HHHhCccccccCCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCEEEEE-ECC-H-HHHH
Confidence 8765432222 22 2333455555554322 23567889999999999999998888777777766443 211 1 1367
Q ss_pred HHHHHHHHhcCeEEECC
Q 013883 414 AFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 414 ~~~~~Ll~~~GV~v~pG 430 (434)
+++++|+++ ||.+.++
T Consensus 340 ~~~~~L~~~-gI~v~~~ 355 (397)
T PRK06939 340 EFADRLLEE-GVYVIGF 355 (397)
T ss_pred HHHHHHHHC-CceEeee
Confidence 899999877 9999864
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=257.85 Aligned_cols=307 Identities=16% Similarity=0.203 Sum_probs=232.6
Q ss_pred cCCeeEeCCC-CCCCCCcHHHHHHHHHHHHcCCC-------CCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCCh
Q 013883 108 KHGAINLGQG-FPNFDGPDFVKDAAIQAIRDGKN-------QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGC 179 (434)
Q Consensus 108 ~~~~i~l~~g-~p~~~~~~~v~~~~~~~~~~~~~-------~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~ 179 (434)
+.+.|||+.+ ++++..++.+.+++.+++++... .|.+..+..+|+++++++++ .++ .|++++|.
T Consensus 108 G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~-------~~~-~i~~s~G~ 179 (481)
T PLN02822 108 GKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLG-------TPD-SILYSYGL 179 (481)
T ss_pred CceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhC-------CCC-EEEECCHH
Confidence 4578999987 78999999999999999987322 35555567889999988886 245 79999887
Q ss_pred HHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhc--ccCC-cEEEecCCCCCc
Q 013883 180 TEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTI--SKNT-RAILMNTPHNPT 255 (434)
Q Consensus 180 ~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i--~~~~-~~i~~~~p~NPT 255 (434)
+ ++..++.+++++||.|++....|..+...+...|.+++.++.++ +++..+++.+++.. .+++ ++|+++.++|++
T Consensus 180 ~-a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~ 258 (481)
T PLN02822 180 S-TIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNS 258 (481)
T ss_pred H-HHHHHHHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCC
Confidence 7 57889999999999999998888888888899999999988763 12222233332222 1234 688888899999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCC--CCceEEEccCChhhccccceeeeEEeChhhH
Q 013883 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM--YERTVTMNSLGKTFSLTGWKIGWAIAPPHLT 333 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~--~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~ 333 (434)
|.+++ +++|+++|++||+++|+||+|....++.....+....+. .+..+++.||||.+|+.| ||++++++++
T Consensus 259 G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G---G~i~g~~~ii 332 (481)
T PLN02822 259 GQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG---GFCTGSARVV 332 (481)
T ss_pred CCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC---eEEEcCHHHH
Confidence 99997 677999999999999999999977776333222221111 245688999999999888 9999999999
Q ss_pred HHHHHHhhccccCCc--hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCC-CC
Q 013883 334 WGVRQAHSFLTFATS--TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPF-GH 409 (434)
Q Consensus 334 ~~l~~~~~~~~~~~~--~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~ 409 (434)
+.++......+++.+ +..+.++..+|+..++ ..+++++++++++++++.|++. |+.+..+.+++++++.+... +.
T Consensus 333 ~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~~ 411 (481)
T PLN02822 333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLED-NPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGS 411 (481)
T ss_pred HHHHhcCCceeeccccCHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCCCccc
Confidence 988866655566654 5567888788865332 2567889999999999999986 88887777888888887432 10
Q ss_pred --CC---HHHHHHHHHHhcCeEEECC
Q 013883 410 --ET---DIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 410 --~~---~~~~~~~Ll~~~GV~v~pG 430 (434)
.+ ..+++++|++++||.+.|+
T Consensus 412 ~~~~~~~~~~~~~~Ll~e~GV~v~~~ 437 (481)
T PLN02822 412 AKEDLSLLEHIADRMLKEDSVLVVVS 437 (481)
T ss_pred ccchHHHHHHHHHHHHhcCCEEEEee
Confidence 01 3578999997779999986
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-29 Score=245.06 Aligned_cols=299 Identities=18% Similarity=0.142 Sum_probs=215.3
Q ss_pred cCCeeEeCCCCC-CCCCcHHHHHHHHHHHHcCCC---CCCCCCCcH----HHHHHHHHHHHhhcCCCCCCCCcEEEcCCh
Q 013883 108 KHGAINLGQGFP-NFDGPDFVKDAAIQAIRDGKN---QYARGHGVP----EFNSAIASRFKKDSGLEVDPEKEVTVTSGC 179 (434)
Q Consensus 108 ~~~~i~l~~g~p-~~~~~~~v~~~~~~~~~~~~~---~Y~~~~G~~----~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~ 179 (434)
+.+.|||+.|.| +++.++.+.+++.+++++... .|....|.. +++++++++++ . ++ +|++++|+
T Consensus 15 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~----~---~~-~i~~~~G~ 86 (360)
T TIGR00858 15 GRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKG----T---EA-ALLFSSGY 86 (360)
T ss_pred CceEEecccCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC----C---CC-EEEECchH
Confidence 447899999965 556778999999998875222 222233443 45666666553 1 44 78888885
Q ss_pred HHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc----CCcEEEecCCCCCc
Q 013883 180 TEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK----NTRAILMNTPHNPT 255 (434)
Q Consensus 180 ~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~----~~~~i~~~~p~NPT 255 (434)
.+ +..++.+++++||+|++++|+|..+...+...|++++.++. +|++.+++.++. ++++|++.+++|||
T Consensus 87 ~~-~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~ 159 (360)
T TIGR00858 87 LA-NVGVISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRH------NDVEHLERLLEKNRGERRKLIVTDGVFSMD 159 (360)
T ss_pred HH-HHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecC------CCHHHHHHHHHHcccCCCeEEEEeCCccCC
Confidence 55 44577888999999999999999999999999999987763 478889988864 46788888899999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCC--CCCceEEEccCChhhccccceeeeEEeChhhH
Q 013883 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPG--MYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT 333 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~--~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~ 333 (434)
|...+ +++|.++|+++|+++|+||+|..+.++..........+ ..++++++.||||.+|++| ||++++++++
T Consensus 160 G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g---G~~~~~~~~~ 233 (360)
T TIGR00858 160 GDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG---AYVAGSQALI 233 (360)
T ss_pred CCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC---cEEEcCHHHH
Confidence 98774 67799999999999999999987665543222211111 1367899999999999766 9999999988
Q ss_pred HHHHHHhhccc--cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCC
Q 013883 334 WGVRQAHSFLT--FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHET 411 (434)
Q Consensus 334 ~~l~~~~~~~~--~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (434)
+.+........ .+.+...+.++..+|+... ..++++++++++++.+.+.|+++++.+.++.+ .++|+.+.. . .+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~-~-~~ 309 (360)
T TIGR00858 234 DYLINRARTLIFSTALPPAVAAAALAALELIQ-EEPWRREKLLALIARLRAGLEALGFTLMPSCT-PIVPVIIGD-N-AS 309 (360)
T ss_pred HHHHHhCccceecCCCCHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHcCCccCCCCC-CEEEEEeCC-H-HH
Confidence 88765443222 2234444555566675422 23567889999999999999998888765544 466776532 1 13
Q ss_pred HHHHHHHHHHhcCeEEECCCC
Q 013883 412 DIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 412 ~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
+.+++++|++ +||.+.++..
T Consensus 310 ~~~~~~~l~~-~gI~v~~~~~ 329 (360)
T TIGR00858 310 ALALAEELQQ-QGIFVGAIRP 329 (360)
T ss_pred HHHHHHHHHH-CCeeEeeeCC
Confidence 5688888865 5999987654
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=245.79 Aligned_cols=292 Identities=19% Similarity=0.191 Sum_probs=207.4
Q ss_pred eEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc
Q 013883 112 INLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI 191 (434)
Q Consensus 112 i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~ 191 (434)
|||+.+.... ++|.+.+++.++. .+...|.|..+..+|+++++++++ + + .+++++|+++++...+.+++
T Consensus 2 ~~~~~~~~~~-p~~~~~~a~~~~~-~~~~~Y~~~~~~~~L~~~la~~~g------~--~-~~~v~~~g~~a~~~~l~~~~ 70 (333)
T PRK10534 2 IDLRSDTVTR-PSRAMLEAMMAAP-VGDDVYGDDPTVNALQDYAAELSG------K--E-AALFLPTGTQANLVALLSHC 70 (333)
T ss_pred cccccccCCC-CCHHHHHHHHhcc-CCCcccCCCHHHHHHHHHHHHHhC------C--C-eEEEeCchHHHHHHHHHHhc
Confidence 6788875555 7788888876644 345678776678899999999976 2 2 45677777888888888889
Q ss_pred CCCCeEEEcCCCchh-HHHH-HHHcC-CEEEEEEcCCCCCCCCHHHHHhhccc------CCcEEEecCCCCCcccCCCHH
Q 013883 192 NPGDEVILFAPFYDS-YEAT-LSMAG-AKIKCITLRPPDFAIPIEELKSTISK------NTRAILMNTPHNPTGKMFTRE 262 (434)
Q Consensus 192 ~~gd~Vlv~~p~y~~-~~~~-~~~~G-~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~i~~~~p~NPTG~~~~~e 262 (434)
++||+|+++.|.|.. |... ....| ++++.++.++ ++.+|++++++++++ ++++|++++|+ ||.+++.+
T Consensus 71 ~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~ 147 (333)
T PRK10534 71 ERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAA-DGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPRE 147 (333)
T ss_pred CCCCeeEEechhhhhHhcCCchHHhcCceEEeecCCC-CCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHH
Confidence 999999999888853 3221 23344 6777777763 789999999999976 58899998765 59999999
Q ss_pred HHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceee-eEEeChhhHHHHHHHhh
Q 013883 263 ELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIG-WAIAPPHLTWGVRQAHS 341 (434)
Q Consensus 263 ~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G-~~~~~~~~~~~l~~~~~ 341 (434)
++++|+++|++|++++|+||+|..............+....++++ .||||.+|++ +| |+++++++++.+++.+.
T Consensus 148 ~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~--~s~SK~~~~~---~G~~~~~~~~~i~~~~~~~~ 222 (333)
T PRK10534 148 YLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFT--ICLSKGLGTP---VGSLLVGNRDYIKRARRWRK 222 (333)
T ss_pred HHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEE--EEeEcCCCCc---ccceEEcCHHHHHHHHHHHH
Confidence 999999999999999999999873221100111122211123333 4899998854 67 68889999999988776
Q ss_pred ccccC--CchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHH
Q 013883 342 FLTFA--TSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYL 419 (434)
Q Consensus 342 ~~~~~--~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 419 (434)
....+ .+.+.|.++..+|++. .+. .++..++|+.+.+.|+++|+++.+++ +.|+|+++.. .+..++.+.|
T Consensus 223 ~~~~~~~~~~~~~a~~~~~l~~~---~~~-~~~~~~~r~~l~~~L~~~g~~~~~~~-~nfv~~~~~~---~~~~~~~~~l 294 (333)
T PRK10534 223 MTGGGMRQAGILAAAGLYALKHN---VAR-LQEDHDNAAWLAEQLREAGADVMRQD-TNMLFVRVGE---EQAAALGEYM 294 (333)
T ss_pred HhCCchhhHHHHHHHHHHHHHhh---HHH-HHHHHHHHHHHHHHHHhCCCccCCCC-ceEEEEECCc---hhHHHHHHHH
Confidence 44322 2345577766677542 222 22344567899999999999988875 5578888742 1355665544
Q ss_pred HHhcCeEEECCC
Q 013883 420 IKEVGVVAIPTS 431 (434)
Q Consensus 420 l~~~GV~v~pG~ 431 (434)
.++||.++||.
T Consensus 295 -~~~gi~v~~~~ 305 (333)
T PRK10534 295 -RERNVLINASP 305 (333)
T ss_pred -HHcCeeecCCc
Confidence 56699999985
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=223.55 Aligned_cols=311 Identities=20% Similarity=0.309 Sum_probs=239.7
Q ss_pred hccccHHHHHHHHhhcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCc
Q 013883 93 KFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKE 172 (434)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~ 172 (434)
.+...+.-+..+.+-+++.+.++..+...-|+|.-.+ -...|+..+. .+++.++++. -++.++ +
T Consensus 25 df~eg~lldane~a~G~~iv~ld~~e~~ryPdP~q~e--------fk~~~~d~rn-k~ls~a~~~d------kpLt~d-n 88 (375)
T KOG0633|consen 25 DFQEGLLLDANEAALGRDIVKLDANENPRYPDPEQME--------FKYVYPDPRN-KRLSDALAQD------KPLTSD-N 88 (375)
T ss_pred hccccceecchhhhcCCCceEeccccCCCCcCHHHcc--------cccccCCccc-chhhhhcccC------CCCCcc-c
Confidence 3444455555666777788888877544444443321 1234555543 4556555443 246777 8
Q ss_pred EEEcCChHHHHHHHHHHccCCC-CeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc--CCcEEEec
Q 013883 173 VTVTSGCTEAIAATILGLINPG-DEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK--NTRAILMN 249 (434)
Q Consensus 173 i~~t~G~~~ai~~~~~~l~~~g-d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~--~~~~i~~~ 249 (434)
|.++-|+.|.|.++++..+.|| ++|++..|+|..|.--+...+++++.+|+.+ +|+++.|.+.+.++. ..|.++++
T Consensus 89 ic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~p-dF~lnvdai~evl~~ds~iK~~F~t 167 (375)
T KOG0633|consen 89 ICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNP-DFSLNVDAIAEVLELDSKIKCIFLT 167 (375)
T ss_pred eEEecCcHHHHHHHHhheecCCccceeecCCcceeEEEEeecCCceEEEecCCC-CccccHHHHHHHHhccccceEEEEc
Confidence 9999999999999999999999 8999999999999888888999999999987 899999999998865 57899999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC
Q 013883 250 TPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP 329 (434)
Q Consensus 250 ~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~ 329 (434)
+|+||||..+..+++++|.+.- .|.++++||+|.+|.-.+ +-..+...++|++++++|||.||++|+|+||-..+
T Consensus 168 SPgNPtg~~ik~~di~KiLe~p--~nglVVvDEAYidFsg~~---S~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~ 242 (375)
T KOG0633|consen 168 SPGNPTGSIIKEDDILKILEMP--DNGLVVVDEAYIDFSGVE---SRMKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFP 242 (375)
T ss_pred CCCCCCcccccHHHHHHHHhCC--CCcEEEEeeeeEeecccc---ccchHhHhCCceeehhhhhhhcCcceeEeeccccc
Confidence 9999999999999999988633 289999999999976322 22334456889999999999999999999999999
Q ss_pred hhhHHHHHHHhhccccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhC-CCE--eecCCeeEEEeeecC
Q 013883 330 PHLTWGVRQAHSFLTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAV-GFK--VFPSSGTYFVVVDHT 405 (434)
Q Consensus 330 ~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~--~~~~~~~~~~~~~~~ 405 (434)
..+++.+...+. +++.+.++..++..+|.+. .+.++..++.+.+.|.++...|.+. ++. +.+..++ |+.+.+.
T Consensus 243 ~~ia~iln~~Ka--PYNiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daN-FiLi~v~ 319 (375)
T KOG0633|consen 243 LSIAEILNRAKA--PYNISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDAN-FILIEVT 319 (375)
T ss_pred HHHHHHHHhccC--CccccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCccccc-EEEEEEc
Confidence 999988887774 7899999999999999963 4678888999999999999999886 444 2344555 4555553
Q ss_pred CCCCCCHHHHHHHHHHhcCeEEE
Q 013883 406 PFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 406 ~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
..+...+..+..+++.+.||.|+
T Consensus 320 ~~~n~~akkly~q~at~~gVvVR 342 (375)
T KOG0633|consen 320 GGDNGMAKKLYKQDATKMGVVVR 342 (375)
T ss_pred CCCcHHHHHHHHHHHHhcceEEE
Confidence 32222344555566667899886
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-28 Score=241.99 Aligned_cols=300 Identities=18% Similarity=0.191 Sum_probs=225.6
Q ss_pred cCCeeEeCCCC-CCCCCcHHHHHHHHHHHHcC---CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 108 KHGAINLGQGF-PNFDGPDFVKDAAIQAIRDG---KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 108 ~~~~i~l~~g~-p~~~~~~~v~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
+++.|||+.|. +++++++.+.+++.+++.+. ...|....|..++++++++++.+..|. ++ .+++++| ++++
T Consensus 32 g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~---~~-~i~~~sG-~~a~ 106 (385)
T TIGR01825 32 GKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKT---EA-ALVFQSG-FNTN 106 (385)
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCC---Cc-EEEECcH-HHHH
Confidence 45789999884 79989999999999888752 235777889999999999999988774 34 6888888 5666
Q ss_pred HHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc----CCcEEEecCCCCCcccCC
Q 013883 184 AATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK----NTRAILMNTPHNPTGKMF 259 (434)
Q Consensus 184 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~----~~~~i~~~~p~NPTG~~~ 259 (434)
..++.+++++||.|++++|+|..+...+...|++++.++ .+|++.+++.+++ ++++|++++++||||.+.
T Consensus 107 ~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~------~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~ 180 (385)
T TIGR01825 107 QGVLSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYK------HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVA 180 (385)
T ss_pred HHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeC------CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCcc
Confidence 678888999999999999999999888888888887653 3577888876653 578888888899999988
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCC-ccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHH
Q 013883 260 TREELNVIASLCIENDVLVFSDEVYDKLAFEMDH-ISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQ 338 (434)
Q Consensus 260 ~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~-~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~ 338 (434)
+ +++|.++|++||+++|+||+|..+.++... .....+.-..+.++++.||||.+|++| ||+++++++++.+..
T Consensus 181 ~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~~~~~~~~~~~~~~ 254 (385)
T TIGR01825 181 P---LPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVG---GYAAGHKELIEYLKN 254 (385)
T ss_pred C---HHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcCC---CEEecCHHHHHHHHH
Confidence 6 677999999999999999999876654211 111112212567899999999998665 999999999888876
Q ss_pred Hhh-cccc-CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHH
Q 013883 339 AHS-FLTF-ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFC 416 (434)
Q Consensus 339 ~~~-~~~~-~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (434)
... +... ..+.+.+.++.++|+...++ .+..+++.++++++.+.|+++|+++..+++.++.+. +.. ..++.+++
T Consensus 255 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~-~~~--~~~~~~~~ 330 (385)
T TIGR01825 255 RARPFLFSTAQPPAVVAALAAAVDELQRS-PELMERLWDNTRFFKAGLGKLGYDTGGSETPITPVV-IGD--EKAAQEFS 330 (385)
T ss_pred hCccccccCCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEE-ECC--HHHHHHHH
Confidence 543 2212 23456677777777643222 245677788899999999999998887777654433 221 11356788
Q ss_pred HHHHHhcCeEEEC
Q 013883 417 EYLIKEVGVVAIP 429 (434)
Q Consensus 417 ~~Ll~~~GV~v~p 429 (434)
++|+++ ||.+.+
T Consensus 331 ~~L~~~-gi~v~~ 342 (385)
T TIGR01825 331 RRLFDE-GIFAQS 342 (385)
T ss_pred HHHHHC-CcEEcc
Confidence 888877 999853
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=238.30 Aligned_cols=306 Identities=18% Similarity=0.125 Sum_probs=215.6
Q ss_pred cCCeeEeCCCCCC--CCC-cHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFPN--FDG-PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p~--~~~-~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...|||..|++. +.. +|.+.+++.+++...... ...+..++++++++++.+..+ .+ ++++++|+++|+.
T Consensus 38 g~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~la~~l~~~~~----~~-~v~~~~gg~eA~~ 110 (396)
T PRK02627 38 GKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHT--SNLYYIEPQEELAEKLVELSG----MD-KVFFCNSGAEANE 110 (396)
T ss_pred CCEEEECCccHHhccCCCCCHHHHHHHHHHHhhcccc--ccccCCHHHHHHHHHHHhhcC----CC-EEEECCCcHHHHH
Confidence 3467999888553 333 588999998888753211 112235788889998887654 35 8999999999999
Q ss_pred HHHHHccCCC-------CeEEEcCCCchhHHHHHHHcCCEE-EEEEcCC--CCC----CCCHHHHHhhcccCCcEEEecC
Q 013883 185 ATILGLINPG-------DEVILFAPFYDSYEATLSMAGAKI-KCITLRP--PDF----AIPIEELKSTISKNTRAILMNT 250 (434)
Q Consensus 185 ~~~~~l~~~g-------d~Vlv~~p~y~~~~~~~~~~G~~~-~~v~~~~--~~~----~~d~~~l~~~i~~~~~~i~~~~ 250 (434)
++++.+...+ ++|++.++.|+++.......+... ...+..+ +++ ..|++.+++++.+++++|+++.
T Consensus 111 ~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~vii~p 190 (396)
T PRK02627 111 AAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITDKTAAVMLEP 190 (396)
T ss_pred HHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhcCCCeEEEEEec
Confidence 9999765432 679999999998766555443322 1111111 111 2289999999988899999998
Q ss_pred CCCCcc-cCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC
Q 013883 251 PHNPTG-KMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP 329 (434)
Q Consensus 251 p~NPTG-~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~ 329 (434)
++||+| .+++.+.+++|.++|++||+++|+||+|.+|.+.+....+..+...++ +.+|||.++ +|+|+||++++
T Consensus 191 ~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pd----i~t~sK~~~-~G~rig~~~~~ 265 (396)
T PRK02627 191 IQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPD----IMTLAKGLG-GGVPIGAVLAK 265 (396)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCC----EEEEcchhh-CCcccEEEEEc
Confidence 899999 688999999999999999999999999999876654333222221222 447999999 99999999999
Q ss_pred hhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCC-EeecCCeeEEEeeecCC
Q 013883 330 PHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGF-KVFPSSGTYFVVVDHTP 406 (434)
Q Consensus 330 ~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~~~~~ 406 (434)
+++++.+.......+++.+.+.|.++.++|+.. +++.++.++.....++.+.+.+.+.++ ..... .|.++|+.+.
T Consensus 266 ~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~i~~~- 343 (396)
T PRK02627 266 EKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRG-LGLMIGIELD- 343 (396)
T ss_pred HHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCeeeecc-CcEEEEEEec-
Confidence 998887765555567889999999999998753 223344444434444444444433332 22233 4567777762
Q ss_pred CCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 407 FGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 407 ~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
.+..+++++|+++ ||.+.|+.
T Consensus 344 ---~~~~~~~~~l~~~-Gv~v~~~~ 364 (396)
T PRK02627 344 ---RPAAEIVKKALEK-GLLINVTG 364 (396)
T ss_pred ---CcHHHHHHHHHHC-CeEEeecC
Confidence 1477899999876 99999975
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-27 Score=232.31 Aligned_cols=302 Identities=18% Similarity=0.136 Sum_probs=214.8
Q ss_pred hcCCeeEeCCCC-CCCCCcHHHHHHHHHHHHcC---CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 107 IKHGAINLGQGF-PNFDGPDFVKDAAIQAIRDG---KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 107 ~~~~~i~l~~g~-p~~~~~~~v~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
.+.+.|||+.|. +++.+++.+.+++.+++... ...|....|..++++.+.+.+.+.++. ++ .|++++| +++
T Consensus 37 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~---~~-~i~~~~g-~~~ 111 (385)
T PRK05958 37 DGRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGA---ER-ALLFSSG-YAA 111 (385)
T ss_pred CCceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC---Cc-EEEECcH-HHH
Confidence 345789999884 46667888999999988752 122334445555566666666655552 33 5666555 566
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccC---CcEEEecCCCCCcccCC
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKN---TRAILMNTPHNPTGKMF 259 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~---~~~i~~~~p~NPTG~~~ 259 (434)
+..++..++++||.|++++|.|+.+...+...|++++.++.. |++.+++.+++. ++++++.+++||||...
T Consensus 112 ~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~ 185 (385)
T PRK05958 112 NLAVLTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPHN------DVDALEALLAKWRAGRALIVTESVFSMDGDLA 185 (385)
T ss_pred HHHHHHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCCC------CHHHHHHHHHhccCCCeEEEEEecccCCCCcC
Confidence 666778889999999999999999999999999999888653 788999888652 45556667899999876
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCcc-c--cCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHH
Q 013883 260 TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHIS-I--ASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGV 336 (434)
Q Consensus 260 ~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~-~--~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l 336 (434)
+ +++|+++|++||+++|+||+|..+.++..... . ..+. ..++++++.|+||.+|.+| ||+++++++.+.+
T Consensus 186 ~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G---g~~~~~~~~~~~~ 258 (385)
T PRK05958 186 P---LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLA-GEPDVILVGTLGKALGSSG---AAVLGSETLIDYL 258 (385)
T ss_pred C---HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCC-CCCceEEEEechhhcccCC---cEEEcCHHHHHHH
Confidence 4 77799999999999999999976554422111 1 1222 2457899999999998766 9999999888877
Q ss_pred HHHhhccc--cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHH
Q 013883 337 RQAHSFLT--FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIA 414 (434)
Q Consensus 337 ~~~~~~~~--~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (434)
........ .+.+...+.++.++|+..++. +++.+++.++++.+.+.|+++|+++.++.++++ ++.++. ..++.+
T Consensus 259 ~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~~~~~~--~~~~~~ 334 (385)
T PRK05958 259 INRARPFIFTTALPPAQAAAARAALRILRRE-PERRERLAALIARLRAGLRALGFQLMDSQSAIQ-PLIVGD--NERALA 334 (385)
T ss_pred HHhCccceecCCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCEE-EEEeCC--HHHHHH
Confidence 54432222 233444445555667643222 456788999999999999998888877777754 555432 124567
Q ss_pred HHHHHHHhcCeEEECCC
Q 013883 415 FCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 415 ~~~~Ll~~~GV~v~pG~ 431 (434)
+.++|.+ +||.+.++.
T Consensus 335 ~~~~l~~-~gI~v~~~~ 350 (385)
T PRK05958 335 LAAALQE-QGFWVGAIR 350 (385)
T ss_pred HHHHHHH-CCceEeccc
Confidence 8888865 599999754
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=236.78 Aligned_cols=297 Identities=21% Similarity=0.189 Sum_probs=211.0
Q ss_pred CeeEeCCC-CCCCCCcHHHHHHHHHHHHcCCC-------CCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 110 GAINLGQG-FPNFDGPDFVKDAAIQAIRDGKN-------QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 110 ~~i~l~~g-~p~~~~~~~v~~~~~~~~~~~~~-------~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
..++|+.. |.++.++|.+++++.+++..... .|.......+|++.++++++ . ++ .|++++| ++
T Consensus 47 ~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g------~-~~-~i~~~sG-~~ 117 (410)
T PRK13392 47 RVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHG------K-ES-ALLFTSG-YV 117 (410)
T ss_pred eEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhC------C-CC-EEEECcH-HH
Confidence 46777765 88899999999999998865321 12221124567777777765 1 34 6888887 56
Q ss_pred HHHHHHHHcc--CCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhc----ccCCcEEEecCCCCCc
Q 013883 182 AIAATILGLI--NPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTI----SKNTRAILMNTPHNPT 255 (434)
Q Consensus 182 ai~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i----~~~~~~i~~~~p~NPT 255 (434)
++..++..+. .+||.|++..+.|..+...+...|+++..++.+ |.+.+++.+ .+++++|++++|+|||
T Consensus 118 a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~t~~v~i~~~~n~t 191 (410)
T PRK13392 118 SNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRHN------DLADLEEQLASVDPDRPKLIAFESVYSMD 191 (410)
T ss_pred HHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeCC------CHHHHHHHHHhccCCCCEEEEEeCCCCCC
Confidence 6766776664 488988888778888878888899988776532 344444444 2478999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCc-eEEEccCChhhccccceeeeEEeChhhHH
Q 013883 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYER-TVTMNSLGKTFSLTGWKIGWAIAPPHLTW 334 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~-~i~i~S~SK~~g~~G~R~G~~~~~~~~~~ 334 (434)
|.+++ +++|.++|++||+++|+||+|....++.....+....+..++ .++++||||.||++| ||+++++++++
T Consensus 192 G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G---G~~~~~~~~~~ 265 (410)
T PRK13392 192 GDIAP---IEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG---GYIAASADLID 265 (410)
T ss_pred ccccc---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc---chhhcCHHHHH
Confidence 99986 667888999999999999999954444332222221122223 378899999999888 99999999999
Q ss_pred HHHHHhhcc--ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCH
Q 013883 335 GVRQAHSFL--TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETD 412 (434)
Q Consensus 335 ~l~~~~~~~--~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (434)
.+++..... +.+.+++.+.++.++|+..+. ....+++++++++.+++.|++.|+++.+++++++. +.+.. . ...
T Consensus 266 ~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~-i~~~~-~-~~~ 341 (410)
T PRK13392 266 FVRSFAPGFIFTTALPPAVAAGATAAIRHLKT-SQTERDAHQDRVAALKAKLNANGIPVMPSPSHIVP-VMVGD-P-TLC 341 (410)
T ss_pred HHHHhCcchhccCcCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEE-EEeCC-H-HHH
Confidence 888766432 233455678888888875332 34456788999999999999999988888887652 22211 1 124
Q ss_pred HHHHHHHHHhcCeEEECCC
Q 013883 413 IAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 413 ~~~~~~Ll~~~GV~v~pG~ 431 (434)
.+++++|++++||.+.|+.
T Consensus 342 ~~~~~~L~~~~GI~v~~~~ 360 (410)
T PRK13392 342 KAISDRLMSEHGIYIQPIN 360 (410)
T ss_pred HHHHHHHHHhCCEEEeeeC
Confidence 5788888877799999853
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=232.87 Aligned_cols=300 Identities=19% Similarity=0.192 Sum_probs=203.2
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHH-HHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQA-IRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~-~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
.+++|+.+.+.. +++.+.+++.+. .......|.|. ..+|+++++++++. + .+++++++++++..++.
T Consensus 6 ~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~--~~~l~~~la~~~~~--------~-~~~~~~~Gs~a~~~~l~ 73 (353)
T PLN02721 6 RVVDLRSDTVTK-PTDAMRAAMANAEVDDDVLGYDPT--ALRLEEEMAKIFGK--------E-AALFVPSGTMGNLISVL 73 (353)
T ss_pred hhhhhhcccccC-CCHHHHHHHHhccCCCcccCCCHH--HHHHHHHHHHHhCC--------c-eeEEecCccHHHHHHHH
Confidence 467899998886 566777777654 22223344443 68999999999872 2 24444444666667777
Q ss_pred HccC-CCCeEEEcCCCchhHHH---HHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc-------cCCcEEEecC-CCCCcc
Q 013883 189 GLIN-PGDEVILFAPFYDSYEA---TLSMAGAKIKCITLRPPDFAIPIEELKSTIS-------KNTRAILMNT-PHNPTG 256 (434)
Q Consensus 189 ~l~~-~gd~Vlv~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~-------~~~~~i~~~~-p~NPTG 256 (434)
.+++ +||+|++++|+|..... .+...|++++.+|.++ ++.+|+|.++++++ +++++|++++ ++||||
T Consensus 74 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G 152 (353)
T PLN02721 74 VHCDVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNE-DGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGG 152 (353)
T ss_pred HHccCCCCeEEEcCccceehhcccchhhhcCceeEecCCCc-CCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCC
Confidence 7777 99999999999865444 5678899999998764 67899999999997 5789999976 588999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeee-EEeChhhHHH
Q 013883 257 KMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGW-AIAPPHLTWG 335 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~-~~~~~~~~~~ 335 (434)
.+++.+++++|+++|++||+++|+|++|..............+....+ .++.|+||.++. ++|+ +++++++++.
T Consensus 153 ~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d--~~~~s~sK~l~~---~~G~~~~~~~~~~~~ 227 (353)
T PLN02721 153 RCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAAD--SVSVCLSKGLGA---PVGSVIVGSKSFIRK 227 (353)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCC--EEEEecccccCC---ceeeEEecCHHHHHh
Confidence 999999999999999999999999999853221100111111111122 445579999873 3565 6788999888
Q ss_pred HHHHhhccccCCchHHHHH--HHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEe--ecCCeeEEEeeecCCCCCC
Q 013883 336 VRQAHSFLTFATSTPMQWA--ATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKV--FPSSGTYFVVVDHTPFGHE 410 (434)
Q Consensus 336 l~~~~~~~~~~~~~~~q~a--~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~--~~~~~~~~~~~~~~~~~~~ 410 (434)
+...+.....+.....+.+ +...++ ++++.++ +..++++.+.+.|+++ ++.+ .+++++ ++|+++......
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~-~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 302 (353)
T PLN02721 228 AKRLRKTLGGGMRQVGVLAAAALVALQ---ENVPKLE-DDHKKAKLLAEGLNQIKGLRVNVAAVETN-IVYFDITDGSRI 302 (353)
T ss_pred HHHHHHhcCCCeehhHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHHHhCCCcEEecCCccce-EEEEEccCCccc
Confidence 7766653332232232222 223333 2344433 3356678899999887 6754 345555 578876431112
Q ss_pred CHHHHHHHHHHhcCeEEECCCCC
Q 013883 411 TDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 411 ~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+..+++++|. ++||.+.|+..+
T Consensus 303 ~~~~~~~~L~-~~gi~v~~~~~~ 324 (353)
T PLN02721 303 TAEKLCKSLE-EHGVLLMPGNSS 324 (353)
T ss_pred cHHHHHHHHH-hCCcEEecCCCc
Confidence 4678888886 569999998644
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-27 Score=229.33 Aligned_cols=289 Identities=15% Similarity=0.095 Sum_probs=204.2
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEc
Q 013883 121 FDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILF 200 (434)
Q Consensus 121 ~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~ 200 (434)
+++++.+++++.++... ...|.+..+..++++.++++++ ++ ++++++|+++++..++.+++++||+|+++
T Consensus 8 ~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~~a~~~g--------~~-~~~~~~~gt~a~~~~~~~l~~~gd~v~~~ 77 (338)
T cd06502 8 TGPTPEMLEAMAAANVG-DDVYGEDPTTAKLEARAAELFG--------KE-AALFVPSGTAANQLALAAHTQPGGSVICH 77 (338)
T ss_pred CCCCHHHHHHHHhcccC-CcccCCCHHHHHHHHHHHHHhC--------CC-eEEEecCchHHHHHHHHHhcCCCCeEEEe
Confidence 56778888888776533 2356555556677777777664 34 57777777899999999999999999999
Q ss_pred CCCchhHHH---HHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-------CCcEEEecCCCCCcccCCCHHHHHHHHHH
Q 013883 201 APFYDSYEA---TLSMAGAKIKCITLRPPDFAIPIEELKSTISK-------NTRAILMNTPHNPTGKMFTREELNVIASL 270 (434)
Q Consensus 201 ~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-------~~~~i~~~~p~NPTG~~~~~e~l~~i~~l 270 (434)
+|+|..+.. .....|++++.++.+ ++.+|++.+++++++ ++++|++++|+|| |.+++.+++++|+++
T Consensus 78 ~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~ 154 (338)
T cd06502 78 ETAHIYTDEAGAPEFLSGVKLLPVPGE--NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISAL 154 (338)
T ss_pred cCcceeeecCCcHHHHcCceEEeecCC--CCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHH
Confidence 999876442 345689999999875 467999999999975 6899999999998 666799999999999
Q ss_pred HHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhc--cccCCc
Q 013883 271 CIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSF--LTFATS 348 (434)
Q Consensus 271 a~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~--~~~~~~ 348 (434)
|++||+++|+||+|..+........+..+.. +..+++.|+||.+|++| .++++++++++++++..... .+++.+
T Consensus 155 ~~~~~~~livDea~~~~~~~~~~~~~~~~~~--~~d~~~~s~sK~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (338)
T cd06502 155 AKENGLPLHLDGARLANAAAALGVALKTYKS--GVDSVSFCLSKGGGAPV--GAVVVGNRDFIARARRRRKQAGGGMRQS 230 (338)
T ss_pred HHHcCCeEeechHHHHHHHHhcCCCHHHHHh--cCCEEEEeccccCCCcc--ceEEECCHHHHHHHHHHHHHhCCChhhH
Confidence 9999999999999864432111112222211 12256779999999887 33456788998888776533 234456
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHH--hcCeE
Q 013883 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIK--EVGVV 426 (434)
Q Consensus 349 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~--~~GV~ 426 (434)
.+.+.++..+|+.. .+ .+..+++.++++++.+.|+++|+.+.++.+++++ +.+.. +......+.+++.+ ++||.
T Consensus 231 ~~~~~a~~~~L~~~-~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-v~~~~-~~~~~~~l~~~l~~~~~~gi~ 306 (338)
T cd06502 231 GFLAAAGLAALEND-LW-LRRLRHDHEMARRLAEALEELGGLESEVQTNIVL-LDPVE-ANAVFVELSKEAIERRGEGVL 306 (338)
T ss_pred HHHHHHHHHHhcCc-hH-HHHHHHHHHHHHHHHHHHHhcCCCcccccCCeEE-EecCC-ccHHHHHHHHHHHHhhhCCEE
Confidence 67778888888753 33 3455777788899999999998877777777654 33321 11111223333321 46999
Q ss_pred EECC
Q 013883 427 AIPT 430 (434)
Q Consensus 427 v~pG 430 (434)
+.+.
T Consensus 307 ~~~~ 310 (338)
T cd06502 307 FYAW 310 (338)
T ss_pred EEec
Confidence 8775
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-26 Score=225.84 Aligned_cols=300 Identities=17% Similarity=0.190 Sum_probs=211.9
Q ss_pred CeeEeCCC-CCCCCCcHHHHHHHHHHHHcCCCC---CCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 110 GAINLGQG-FPNFDGPDFVKDAAIQAIRDGKNQ---YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 110 ~~i~l~~g-~p~~~~~~~v~~~~~~~~~~~~~~---Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
.+++|+.. +.+.+.++.+.+++++++++.... |....|..++++++.+.+.+.+|. ++ .|++ +++++++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~-~iv~-~sg~~a~~~ 76 (349)
T cd06454 2 KVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK---EA-ALVF-SSGYAANDG 76 (349)
T ss_pred CceecccCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC---CC-EEEe-ccHHHHHHH
Confidence 45677665 778887899999999998763222 222334444555555555544443 23 4554 555778888
Q ss_pred HHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-----CCcEEEecCCCCCcccCCC
Q 013883 186 TILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-----NTRAILMNTPHNPTGKMFT 260 (434)
Q Consensus 186 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-----~~~~i~~~~p~NPTG~~~~ 260 (434)
++.+++++||.|++++|.|+.+...+...|++++.++. +|.+.+++++++ +++++++++|+||||...+
T Consensus 77 ~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~ 150 (349)
T cd06454 77 VLSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKH------NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP 150 (349)
T ss_pred HHHHhcCCCCEEEEehhhhHHHHHHHHHcCCceEEecC------CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccC
Confidence 88888999999999999999999889999999987753 367778887764 4677788899999998874
Q ss_pred HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCC-CCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHH
Q 013883 261 REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLP-GMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA 339 (434)
Q Consensus 261 ~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~-~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~ 339 (434)
+++|+++|+++|+++|+|++|....++........+. ...+.++++.|++|.++.+| ||++.++++.+.+...
T Consensus 151 ---~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~i~~~~~~~~~~~~~ 224 (349)
T cd06454 151 ---LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG---GYIAGSKELIDYLRSY 224 (349)
T ss_pred ---HHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC---CEEECCHHHHHHHHHh
Confidence 6778999999999999999997533322111111111 22356799999999998655 9999999888877654
Q ss_pred hhcc--ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHH
Q 013883 340 HSFL--TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCE 417 (434)
Q Consensus 340 ~~~~--~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (434)
.... ....+...+.++...|+...+ .+..++++.++++.+.+.|.+.|+.+..+.++++.++.+.+ + .++.++++
T Consensus 225 ~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~-~-~~~~~~~~ 301 (349)
T cd06454 225 ARGFIFSTSLPPAVAAAALAALEVLQG-GPERRERLQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDD-P-AKAVAFSD 301 (349)
T ss_pred chhhhccCCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcEEEEeCCC-h-HHHHHHHH
Confidence 3322 224455566667777765333 45678899999999999999989887766555554443321 1 24678888
Q ss_pred HHHHhcCeEEECC
Q 013883 418 YLIKEVGVVAIPT 430 (434)
Q Consensus 418 ~Ll~~~GV~v~pG 430 (434)
.|+++ ||.+.++
T Consensus 302 ~L~~~-gI~~~~~ 313 (349)
T cd06454 302 ALLER-GIYVQAI 313 (349)
T ss_pred HHHhC-CceEEEe
Confidence 88776 9999875
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=234.39 Aligned_cols=296 Identities=16% Similarity=0.205 Sum_probs=208.5
Q ss_pred CCeeEeCCC-CCCCCC-cHHHHHHHHHHHHcCC-------CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCCh
Q 013883 109 HGAINLGQG-FPNFDG-PDFVKDAAIQAIRDGK-------NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGC 179 (434)
Q Consensus 109 ~~~i~l~~g-~p~~~~-~~~v~~~~~~~~~~~~-------~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~ 179 (434)
...+||+.. |.++.. ++...+++.+++++-. ..|+...++.+|++++|++++. ++ .|++++|
T Consensus 100 ~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~-------~~-ai~~~~G- 170 (489)
T PLN02483 100 RRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGK-------PA-AIVFGMG- 170 (489)
T ss_pred ceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCC-------Cc-EEEECCH-
Confidence 367999875 888874 4556666666665421 2366666788999999999872 44 6777776
Q ss_pred HHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc-------cCC-----cEEE
Q 013883 180 TEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS-------KNT-----RAIL 247 (434)
Q Consensus 180 ~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~-------~~~-----~~i~ 247 (434)
..++..++.+++++||.|++++|.|..+...++..|++++.++.+ |++.+++.++ +++ ++++
T Consensus 171 ~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~------d~~~le~~l~~~i~~~~p~t~~p~~k~li 244 (489)
T PLN02483 171 YATNSTIIPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHN------TPSHLEEVLREQIAEGQPRTHRPWKKIIV 244 (489)
T ss_pred HHHHHHHHHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC------CHHHHHHHHHhhhhccccccccCCceEEE
Confidence 555557788899999999999999999999999999999999865 3455555443 222 5555
Q ss_pred ecC-CCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccc---cCCCCCCCceEEEccCChhhcccccee
Q 013883 248 MNT-PHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISI---ASLPGMYERTVTMNSLGKTFSLTGWKI 323 (434)
Q Consensus 248 ~~~-p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~---~~~~~~~~~~i~i~S~SK~~g~~G~R~ 323 (434)
++. ..|++|.+. ++++|+++|++||++||+||+|....++...... ..+. ..+.+++++||||.+|+.|
T Consensus 245 vve~v~s~~G~~~---~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~-~~~~dI~~~SfSKs~g~~G--- 317 (489)
T PLN02483 245 IVEGIYSMEGELC---KLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVD-PADVDIMMGTFTKSFGSCG--- 317 (489)
T ss_pred EECCCCCCCCccc---CHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCC-cccCcEEEEecchhcccCc---
Confidence 544 579999887 5777999999999999999999854443222211 1221 2356799999999999777
Q ss_pred eeEEeChhhHHHHHHHhhccccC--CchHHHHHHHHHHh-----CChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCe
Q 013883 324 GWAIAPPHLTWGVRQAHSFLTFA--TSTPMQWAATAALR-----APETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSG 396 (434)
Q Consensus 324 G~~~~~~~~~~~l~~~~~~~~~~--~~~~~q~a~~~~L~-----~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 396 (434)
||+++++++++.++.......++ .+++...++.++|+ +..+...+++++++++++++++.|+++|+.+..+.+
T Consensus 318 G~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G~~v~~~~~ 397 (489)
T PLN02483 318 GYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMGFEVLGDND 397 (489)
T ss_pred eEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCCCcccCCCC
Confidence 99999999999988764322222 23333323444443 223445666889999999999999999998876655
Q ss_pred eEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 397 TYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
++++++.+... .+..+++++|+++ ||.+.|
T Consensus 398 sp~~~l~l~~~--~~~~~~~~~Ll~~-GI~v~~ 427 (489)
T PLN02483 398 SPVMPIMLYNP--AKIPAFSRECLKQ-NVAVVV 427 (489)
T ss_pred CCEEEEEECCH--HHHHHHHHHHHHC-CcEEee
Confidence 55555443211 1345788888865 999996
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=229.83 Aligned_cols=300 Identities=18% Similarity=0.211 Sum_probs=216.0
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC-----CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcC-ChHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYAR-----GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTS-GCTEAI 183 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~-----~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~-G~~~ai 183 (434)
++++|+.|.|++++|+.+.++..++ .....|.+ ..|.+++++++++++.+.+|.+. + ++++++ |++++.
T Consensus 21 ~~~~l~~g~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~--~-~v~~~~~g~~~~~ 95 (398)
T cd00613 21 SMSFLGSGTYKHNPPAVIKRNILEN--EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDV--A-NASLQDEATAAAE 95 (398)
T ss_pred CcccccccccCCcCcHHHHHHhccc--cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCc--c-ceeccCchHHHHH
Confidence 4589999999999999988877666 33345666 68999999999999999988643 3 455555 555565
Q ss_pred HHHHHHccCC--CCeEEEcCCCchhHHHHHHHcC----CEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCccc
Q 013883 184 AATILGLINP--GDEVILFAPFYDSYEATLSMAG----AKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGK 257 (434)
Q Consensus 184 ~~~~~~l~~~--gd~Vlv~~p~y~~~~~~~~~~G----~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~ 257 (434)
..++.+++.+ ||+|++++|.|+.+...+...| ++++.+++++ ++.+|++.+++++++++++|++++|+ |||.
T Consensus 96 ~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~t~~viv~~~~-~~G~ 173 (398)
T cd00613 96 AAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDE-GGTVDLEALKEEVSEEVAALMVQYPN-TLGV 173 (398)
T ss_pred HHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCC-CCCcCHHHHHHhcCCCeEEEEEECCC-CCce
Confidence 5556666666 9999999999999998888887 8999998864 56789999999999999999999885 8999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccc----cceeeeEEeChhhH
Q 013883 258 MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLT----GWKIGWAIAPPHLT 333 (434)
Q Consensus 258 ~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~----G~R~G~~~~~~~~~ 333 (434)
+. +.+++|+++|++||+++|+|+++........ .+..+..+++.|++|.+ ++ |+|+||++.+++++
T Consensus 174 ~~--~~l~~i~~la~~~g~~livD~~~~~~~~~~~-------~~~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~~~~~ 243 (398)
T cd00613 174 FE--DLIKEIADIAHSAGALVYVDGDNLNLTGLKP-------PGEYGADIVVGNLQKTG-VPHGGGGPGAGFFAVKKELV 243 (398)
T ss_pred ec--chHHHHHHHHHhcCCEEEEEeccccccCCCC-------hHHcCCCEEEeeccccC-CCCCCCCCceeEEEEhhhhH
Confidence 84 3579999999999999999998754321100 11123568999999998 45 89999999998877
Q ss_pred HHHHHH-----------------------------hhccccCCch-HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 013883 334 WGVRQA-----------------------------HSFLTFATST-PMQWAATAALRAPETYYEELKRDYSAKKAILVEG 383 (434)
Q Consensus 334 ~~l~~~-----------------------------~~~~~~~~~~-~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~ 383 (434)
+.+... .....++.+. ..+.++..++...++.+++++++++++++++++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~ 323 (398)
T cd00613 244 RFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKR 323 (398)
T ss_pred hhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 654110 0001122222 2333433334334567788899999999999999
Q ss_pred hhhCCCEeecCCeeEE--EeeecCCC-CCCCHHHHHHHHHHhcCeEEEC
Q 013883 384 LNAVGFKVFPSSGTYF--VVVDHTPF-GHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 384 L~~~g~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
|++++... .+.+.++ +++++... + .+..+++++|+++ ||.+..
T Consensus 324 L~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~~~~~~~~L~~~-gi~~~~ 369 (398)
T cd00613 324 LKEVGGVL-PFNGPFFHEFVLRLPPLYG-IRAEDLAKALIDG-GFHAPT 369 (398)
T ss_pred HHhcCCcc-cCCCCeeEEEEEEcCCcch-HHHHHHHHhhhhc-Cccccc
Confidence 99886543 2333333 45555321 1 2467888888765 887643
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=225.49 Aligned_cols=300 Identities=18% Similarity=0.190 Sum_probs=212.7
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC---------CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYAR---------GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~---------~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~ 180 (434)
+.+.|..+.-+ +.+..+.+++.+.+.+....... ...+.++|+.++++++ .. +++ +|++++|++
T Consensus 19 ~~~yld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g----~~-~~~-~i~~~~~~t 91 (401)
T PRK10874 19 AGVYLDSAATA-LKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLN----AP-DAK-NIVWTRGTT 91 (401)
T ss_pred ceEEEeCCccc-CCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcC----CC-CCC-EEEEECCHH
Confidence 46778776544 35567888888777642111100 0114466777777665 21 566 899999999
Q ss_pred HHHHHHHHHc----cCCCCeEEEcCCCchh----HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCC
Q 013883 181 EAIAATILGL----INPGDEVILFAPFYDS----YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPH 252 (434)
Q Consensus 181 ~ai~~~~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~ 252 (434)
+++.+++.++ +++||+|++.+|.|++ +...++..|++++.++.+. ++.+|++.+++++++++++|++++|+
T Consensus 92 ~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~t~lv~i~~~~ 170 (401)
T PRK10874 92 ESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGA-DRLPDVDLLPELITPRTRILALGQMS 170 (401)
T ss_pred HHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCC-CCcCCHHHHHHhcCcCcEEEEEeCCc
Confidence 9999999987 4799999999999865 4556678899999999874 67889999999999999999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhh
Q 013883 253 NPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL 332 (434)
Q Consensus 253 NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~ 332 (434)
||||..++ +++|+++|+++|+++|+|++|....+. ..+.. .+..+++.|++|.+|.+| +||+++++++
T Consensus 171 n~tG~~~~---~~~i~~l~~~~g~~~ivD~a~~~g~~~---~~~~~----~~~d~~~~s~~K~~gp~G--~G~l~~~~~~ 238 (401)
T PRK10874 171 NVTGGCPD---LARAITLAHQAGMVVMVDGAQGAVHFP---ADVQA----LDIDFYAFSGHKLYGPTG--IGVLYGKSEL 238 (401)
T ss_pred ccccCcCC---HHHHHHHHHHcCCEEEEECCccccccc---CCchh----cCCCEEEEecccccCCCc--cEEEEEchHH
Confidence 99999986 567888999999999999999643221 12211 134577899999888667 7999999988
Q ss_pred HHHHHHHh---------------------hccccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhC-CC
Q 013883 333 TWGVRQAH---------------------SFLTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAV-GF 389 (434)
Q Consensus 333 ~~~l~~~~---------------------~~~~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 389 (434)
++.+.... ++...+++...+.++..+++.. +...+..+++.++.++++.+.|+++ |+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~ 318 (401)
T PRK10874 239 LEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGF 318 (401)
T ss_pred HhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 77654221 1112244555666666666532 1123445677778889999999886 88
Q ss_pred EeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 390 KVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
.+..+..+.++++.+.. . +..++.+.| +++||.+.+|..|
T Consensus 319 ~~~~~~~~~i~~~~~~~--~-~~~~~~~~L-~~~gI~v~~g~~~ 358 (401)
T PRK10874 319 RSFRCQDSSLLAFDFAG--V-HHSDLVTLL-AEYGIALRAGQHC 358 (401)
T ss_pred EEeCCCCCcEEEEEECC--c-CHHHHHHHH-HHCCcEEeccccc
Confidence 87754444455555532 2 456777766 4569999998743
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=229.18 Aligned_cols=299 Identities=19% Similarity=0.207 Sum_probs=209.4
Q ss_pred CCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCC---CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 109 HGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGK---NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 109 ~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~---~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
...|||..|.. .++ .++.+.+++.+++.+.. ..|. .+.++.+++.+.+.+|. + ++++++|++++
T Consensus 27 ~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~la~~~g~----~-~~~~~~sg~~a 96 (379)
T TIGR00707 27 KEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNLYY-----TEPQEELAEKLVEHSGA----D-RVFFCNSGAEA 96 (379)
T ss_pred CEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccC-----CHHHHHHHHHHHhhCCC----C-EEEEeCCcHHH
Confidence 36799988632 222 45889999988887632 2232 24455555555555543 4 79999999999
Q ss_pred HHHHHHHc---cC----CCCeEEEcCCCchhHHHHHHHcCCEEEE----EEcCCCCCCC----CHHHHHhhcccCCcEEE
Q 013883 183 IAATILGL---IN----PGDEVILFAPFYDSYEATLSMAGAKIKC----ITLRPPDFAI----PIEELKSTISKNTRAIL 247 (434)
Q Consensus 183 i~~~~~~l---~~----~gd~Vlv~~p~y~~~~~~~~~~G~~~~~----v~~~~~~~~~----d~~~l~~~i~~~~~~i~ 247 (434)
+..+++.+ .. +||+|++++|+|+++.......+..... .++.. ++.. |++.+++.+++++++|+
T Consensus 97 ~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~~~~~~~~~~v~ 175 (379)
T TIGR00707 97 NEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVP-GFSYAPYNDIESLKKAIDDETAAVI 175 (379)
T ss_pred HHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCC-CceeeCCCCHHHHHHHhhhCeeEEE
Confidence 99888755 22 3799999999999887776666554321 22221 2211 89999999988899999
Q ss_pred ecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeE
Q 013883 248 MNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWA 326 (434)
Q Consensus 248 ~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~ 326 (434)
++.++||+|.. ++.+++++|.++|+++|+++|+||+|.+|.+.+........ +..+++ .+|||.++ +|+|+||+
T Consensus 176 ~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~-~~~~d~---~t~sK~~~-~G~riG~~ 250 (379)
T TIGR00707 176 VEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHY-GIEPDI---ITLAKGLG-GGVPIGAT 250 (379)
T ss_pred EEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhc-CCCCCE---EEEccccc-CCcccEEE
Confidence 97667778864 68999999999999999999999999987665432222222 122232 37899999 99999999
Q ss_pred EeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC----CCEeecCCeeEEEee
Q 013883 327 IAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV----GFKVFPSSGTYFVVV 402 (434)
Q Consensus 327 ~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~ 402 (434)
++++++++.+........++.+.+.|.++.++|+..++ .+.+++++++++.+++.|++. ++...++ .+.++|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~g~~~~~ 327 (379)
T TIGR00707 251 LAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEK--ERLLENVKEKGDYFKERLEELGKNYPNKEVRG-KGLMLGI 327 (379)
T ss_pred EEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHhhCCCCcccc-CceEEEE
Confidence 99999998887655556778889999999988874221 234566677777777766654 3322223 4556666
Q ss_pred ecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 403 DHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 403 ~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
.+.+ +..+++++|.+ .||.+.|+.
T Consensus 328 ~~~~----~~~~~~~~l~~-~Gv~v~~~~ 351 (379)
T TIGR00707 328 ELEA----PCKDIVKKALE-KGLLVNCAG 351 (379)
T ss_pred EecC----cHHHHHHHHHH-CCcEEeeCC
Confidence 6532 35678888755 599999964
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=227.56 Aligned_cols=301 Identities=18% Similarity=0.174 Sum_probs=207.0
Q ss_pred CCeeEeCCCC----CCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 109 HGAINLGQGF----PNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 109 ~~~i~l~~g~----p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
...+||..|. -++ .+|.+.+++.+++.+..+. ... ...+...++++.+.+..+ .+ ++++++|+++|+.
T Consensus 31 ~~~lD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~~~-~~~-~~~~~~~~la~~l~~~~~----~~-~v~~~~sGseA~~ 102 (389)
T PRK01278 31 ERYLDFASGIAVNSLGH-AHPHLVEALKEQAEKLWHV-SNL-YRIPEQERLAERLVENSF----AD-KVFFTNSGAEAVE 102 (389)
T ss_pred CEEEECCccHhhccCCC-CCHHHHHHHHHHHHhcCcc-ccc-cCChHHHHHHHHHHhhCC----CC-EEEEcCCcHHHHH
Confidence 3578887752 233 4788899999988753221 111 122344556666654332 34 7999999999999
Q ss_pred HHHHHc----cCCCC----eEEEcCCCchhHHHHHHHcCCEEEEEEc-C--CCCCC----CCHHHHHhhcccCCcEEEec
Q 013883 185 ATILGL----INPGD----EVILFAPFYDSYEATLSMAGAKIKCITL-R--PPDFA----IPIEELKSTISKNTRAILMN 249 (434)
Q Consensus 185 ~~~~~l----~~~gd----~Vlv~~p~y~~~~~~~~~~G~~~~~v~~-~--~~~~~----~d~~~l~~~i~~~~~~i~~~ 249 (434)
.+++.+ .++|| +|++.++.|+++.......+......+. . .+++. .|++.+++++++++++|+++
T Consensus 103 ~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~avive 182 (389)
T PRK01278 103 CAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPNTAAILIE 182 (389)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCCeEEEEEe
Confidence 998876 45666 8999999999987776665544322211 1 11222 58999999998889999998
Q ss_pred CCCCCcc-cCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEe
Q 013883 250 TPHNPTG-KMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA 328 (434)
Q Consensus 250 ~p~NPTG-~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~ 328 (434)
.++||+| .+++.+.+++|.++|++||+++|+||+|.++.+.+.......+.-.+| +.+|||.++ +|+|+||+++
T Consensus 183 p~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd----i~t~sK~l~-~G~~ig~~~~ 257 (389)
T PRK01278 183 PIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPD----IMAVAKGIG-GGFPLGACLA 257 (389)
T ss_pred cccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCC----EEEEehhcc-CCcceEEEEE
Confidence 8899999 788999999999999999999999999998876654322222211122 458999999 9999999999
Q ss_pred ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--h---HHHHHHHHHHHHHHHHHHHHhhhCC--CEeecCCeeEEEe
Q 013883 329 PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--E---TYYEELKRDYSAKKAILVEGLNAVG--FKVFPSSGTYFVV 401 (434)
Q Consensus 329 ~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~---~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~ 401 (434)
++++++.+.......+++.+++.|.++.++|+.. + ++++++.++++++.+.+. ++.. +..+.+ .|++++
T Consensus 258 ~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~---~~~~~~~~~v~g-~G~~~~ 333 (389)
T PRK01278 258 TEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLV---DRFPDVIEEVRG-KGLLLG 333 (389)
T ss_pred cHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---hhCCCceeeEec-ccEEEE
Confidence 9999888776666678889999999998888642 1 222333333333333322 2222 222334 455666
Q ss_pred eecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 402 VDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 402 ~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+.+.. ++.+++++|+++ ||.+.||.
T Consensus 334 i~~~~----~~~~~~~~l~~~-GV~~~p~~ 358 (389)
T PRK01278 334 LKCVV----PNRDLVQALRDE-GLLTVGAG 358 (389)
T ss_pred EEEec----CHHHHHHHHHHC-CeEEeecC
Confidence 66532 477899999877 99999974
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-26 Score=227.04 Aligned_cols=300 Identities=20% Similarity=0.171 Sum_probs=213.9
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHc-------CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRD-------GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~-------~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
..++|..|... .++.+++++.+.+.. +...|....+..++++.+.+++.+.+|.+ .. .|++++ ++++
T Consensus 20 ~~~~~~~~~~~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~--~~-~v~~~s-gt~a 93 (402)
T cd00378 20 ETLELIASENF--TSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE--YA-NVQPHS-GSQA 93 (402)
T ss_pred hCeeeeccCCc--CCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC--ce-eeecCC-cHHH
Confidence 57888655322 266777777655421 12335555667788887777787777754 33 566665 5799
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHHHH-----HHHcCCEEEEEEcCCC--CCCCCHHHHHhhcc-cCCcEEEecCCCCC
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYEAT-----LSMAGAKIKCITLRPP--DFAIPIEELKSTIS-KNTRAILMNTPHNP 254 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~~~-----~~~~G~~~~~v~~~~~--~~~~d~~~l~~~i~-~~~~~i~~~~p~NP 254 (434)
+..++.+++++||+|++++|.|+.+... ++..|.+++.++++.+ ++.+|++.+++++. .+++++++++|+||
T Consensus 94 ~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~ 173 (402)
T cd00378 94 NLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYP 173 (402)
T ss_pred HHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCcccC
Confidence 9999999999999999999999876443 5667888888877653 68999999999985 57899999888887
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcCcC-CccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeCh-hh
Q 013883 255 TGKMFTREELNVIASLCIENDVLVFSDEVY-DKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP-HL 332 (434)
Q Consensus 255 TG~~~~~e~l~~i~~la~~~~~~iI~Deay-~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~-~~ 332 (434)
+ .. ++++|+++|++||+++|+|++| .++.+.+..... +. .. .+++.|++|.+ +|+|.||+++++ ++
T Consensus 174 ~--~~---~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~--~~--~~-dv~~~s~sK~l--~G~~gg~i~~~~~~~ 241 (402)
T cd00378 174 R--PI---DFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNP--LP--GA-DVVTTTTHKTL--RGPRGGLILTRKGEL 241 (402)
T ss_pred C--Cc---CHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCc--cc--CC-cEEEeccccCC--CCCCceEEEeccHHH
Confidence 4 33 4778999999999999999995 555444422211 11 11 36899999987 689999999987 88
Q ss_pred HHHHHHHhhccccCCchH-HHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCEee-cCCeeEEEeeecCCCCC
Q 013883 333 TWGVRQAHSFLTFATSTP-MQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFKVF-PSSGTYFVVVDHTPFGH 409 (434)
Q Consensus 333 ~~~l~~~~~~~~~~~~~~-~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~ 409 (434)
++++.........+.+.+ .+.++..++... ..+.++.+++++++++.+.+.|++.|+.+. .+.+++++|+++.+.+.
T Consensus 242 ~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~v~v~~~~~~~ 321 (402)
T cd00378 242 AKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFKVVSGGTDNHLVLVDLRPKGI 321 (402)
T ss_pred HHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEeecCCCCeEEEEeCCccCC
Confidence 888876654333333333 333334444432 225677788899999999999999999876 45788999999864433
Q ss_pred CCHHHHHHHHHHhcCeEEEC
Q 013883 410 ETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 410 ~~~~~~~~~Ll~~~GV~v~p 429 (434)
+...+. ++++++||.+.+
T Consensus 322 -~~~~~~-~~l~~~gI~v~~ 339 (402)
T cd00378 322 -TGKAAE-DALEEAGITVNK 339 (402)
T ss_pred -CHHHHH-HHHHHcCcEEcC
Confidence 344444 456778999975
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=223.86 Aligned_cols=299 Identities=19% Similarity=0.197 Sum_probs=212.0
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcC--CCCCCCCC-------CcHHHHHHHHHHHHhhcCCCC-CCCCcEEEcCCh
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDG--KNQYARGH-------GVPEFNSAIASRFKKDSGLEV-DPEKEVTVTSGC 179 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~--~~~Y~~~~-------G~~~lr~~ia~~l~~~~g~~~-~~~~~i~~t~G~ 179 (434)
+.+.|..+.-+ +.|+.+.+++.+.+... ...+.... .+.++|+.++++++ . +++ +|++|+|+
T Consensus 16 ~~iyld~a~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~-~i~~t~g~ 87 (398)
T TIGR03392 16 GTVYLDSAATA-LKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLN------APDAE-NIVWTRGT 87 (398)
T ss_pred CeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhC------CCCCC-eEEEeCCh
Confidence 56788777554 35567888887776532 11222221 23457788887776 3 355 89999999
Q ss_pred HHHHHHHHHHc----cCCCCeEEEcCCCchh----HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCC
Q 013883 180 TEAIAATILGL----INPGDEVILFAPFYDS----YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTP 251 (434)
Q Consensus 180 ~~ai~~~~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p 251 (434)
++++..++.++ +++||+|++++|.|++ +...++..|++++.++.+. ++.+|++.+++++++++++|++++|
T Consensus 88 t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~~~~~l~~~i~~~t~lv~i~~~ 166 (398)
T TIGR03392 88 TESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGA-DLLPDIRQLPELLTPRTRILALGQM 166 (398)
T ss_pred HHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCC-CCCcCHHHHHHHhccCceEEEEECc
Confidence 99999999887 5899999999999876 4556788999999999875 5678999999999999999999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh
Q 013883 252 HNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH 331 (434)
Q Consensus 252 ~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~ 331 (434)
+||||.+++ +++|+++|+++|+++|+|++|....+. ..+.. .+..+++.|++|.+|.+| +||++++++
T Consensus 167 ~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~~---~~~~~----~~~d~~~~s~~K~~gp~G--~G~l~~~~~ 234 (398)
T TIGR03392 167 SNVTGGCPD---LARAITLAHQYGAVVVVDGAQGVVHGP---PDVQA----LDIDFYAFSGHKLYGPTG--IGVLYGKTE 234 (398)
T ss_pred cccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCCCC---CChhh----cCCCEEEEecccccCCCc--eEEEEEcHH
Confidence 999999986 566899999999999999999754321 11211 123467788889888666 899999988
Q ss_pred hHHHHHHHh---------------------hccccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhC-C
Q 013883 332 LTWGVRQAH---------------------SFLTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAV-G 388 (434)
Q Consensus 332 ~~~~l~~~~---------------------~~~~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g 388 (434)
+++++.... ++...+++.+...++..+++.. +...++..++.++.++.+.+.|+++ |
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g 314 (398)
T TIGR03392 235 LLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPG 314 (398)
T ss_pred HHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 877653221 1111234444555555555432 1224466677788889999999886 7
Q ss_pred CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 389 FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+.+..+..+.++.+.+. +. ++.+++.+|. ++||.+.+|..|
T Consensus 315 ~~~~~~~~~~i~~~~~~--~~-~~~~l~~~L~-~~gI~v~~g~~~ 355 (398)
T TIGR03392 315 FRSFRCPGSSLLAFDFA--GV-HHSDLAALLA-ESGIALRAGQHC 355 (398)
T ss_pred eEEeCCCCCcEEEEEeC--Cc-CHHHHHHHHH-hCCEEEecCccc
Confidence 87765444445555543 22 4667888775 569999998743
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-26 Score=224.07 Aligned_cols=260 Identities=16% Similarity=0.150 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CC
Q 013883 149 PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PD 227 (434)
Q Consensus 149 ~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~ 227 (434)
.++++.++++++ .+ ++++++|+++++..++.+++++||.|+++.+.|+.....++..|++++.++.+. .+
T Consensus 54 ~~~~e~lA~~~g--------~~-~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~ 124 (370)
T TIGR02539 54 HDFLEDLAEFLG--------MD-EARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPE 124 (370)
T ss_pred HHHHHHHHHHhC--------CC-ceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHHHHHHcCCEEEEEecCCccc
Confidence 466777777765 23 567789999999999999999999999998987776678899999999999864 35
Q ss_pred CCCCHHHHHhhccc-------CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCC
Q 013883 228 FAIPIEELKSTISK-------NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLP 300 (434)
Q Consensus 228 ~~~d~~~l~~~i~~-------~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~ 300 (434)
+.+|++.+++++++ ++++|++++|+||||...+ +++|+++|+++|+++|+||+|...... .....
T Consensus 125 ~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~~---~~~~~-- 196 (370)
T TIGR02539 125 YKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRMP---VSAKE-- 196 (370)
T ss_pred CCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccCCcC---CCHHH--
Confidence 88999999999863 6789999999999998775 667888999999999999999874211 11111
Q ss_pred CCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccC--------CchHHHHHHHHHHhCChHHHHHHHHH
Q 013883 301 GMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA--------TSTPMQWAATAALRAPETYYEELKRD 372 (434)
Q Consensus 301 ~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~--------~~~~~q~a~~~~L~~~~~~~~~~~~~ 372 (434)
.+..++++|++|.++ +|.|+||+++++++++.++.......++ .....+.++..+|....++++...+.
T Consensus 197 --~~~di~v~s~sK~~~-~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~ 273 (370)
T TIGR02539 197 --IGADFIVGSGHKSMA-ASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVKRWDEE 273 (370)
T ss_pred --cCCCEEEeeCccccc-CCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 134577899999999 6778999999999999887765432221 11124555555665434455555555
Q ss_pred HHHHHHHHHHHhhhCCCEee--cCCeeEEEeeecCCCC------CCCHHHHHHHHHHhcCeE-EECC
Q 013883 373 YSAKKAILVEGLNAVGFKVF--PSSGTYFVVVDHTPFG------HETDIAFCEYLIKEVGVV-AIPT 430 (434)
Q Consensus 373 ~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~Ll~~~GV~-v~pG 430 (434)
++. ++++++.|+++|+++. .+....|++++++... ......+.++|.+ +||. +.||
T Consensus 274 ~~~-~~~l~~~L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e-~GI~~ir~~ 338 (370)
T TIGR02539 274 VKK-TRWFVAELEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKK-RGIHGIRSG 338 (370)
T ss_pred HHH-HHHHHHHHHhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHh-CCCccccCC
Confidence 444 4589999999999864 2344556667653210 1123457777765 5997 7765
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-26 Score=225.91 Aligned_cols=305 Identities=16% Similarity=0.108 Sum_probs=210.7
Q ss_pred cCCeeEeCCCCC--CCCC-cHHHHHHHHHHHHcCC---CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 108 KHGAINLGQGFP--NFDG-PDFVKDAAIQAIRDGK---NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 108 ~~~~i~l~~g~p--~~~~-~~~v~~~~~~~~~~~~---~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
+.+.|||..|.+ .+.. +|.+.+++.+++++.. ..|.+.. ..++++.+.+..+.. +++ ++++++|+++
T Consensus 42 g~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~-----~~~la~~l~~~~~~~-~~~-~v~~~~sgse 114 (398)
T PRK03244 42 GKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATEP-----QIALAERLVELLGAP-EGG-RVFFCNSGAE 114 (398)
T ss_pred CCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCccCCHH-----HHHHHHHHHHhCCCC-CCC-EEEEeCchHH
Confidence 346799988733 3444 6889999999887632 2354332 234555555554422 345 8999999999
Q ss_pred HHHHHHHHccCCC-CeEEEcCCCchhHHHHHHH-cCCEEEEEEcCC--CCC----CCCHHHHHhhcccCCcEEEecCCCC
Q 013883 182 AIAATILGLINPG-DEVILFAPFYDSYEATLSM-AGAKIKCITLRP--PDF----AIPIEELKSTISKNTRAILMNTPHN 253 (434)
Q Consensus 182 ai~~~~~~l~~~g-d~Vlv~~p~y~~~~~~~~~-~G~~~~~v~~~~--~~~----~~d~~~l~~~i~~~~~~i~~~~p~N 253 (434)
++..+++.+..+| +.|+..+++|+++...... .|......++.+ .+. ..|++.+++.+.+++++|+++.++|
T Consensus 115 a~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aviiep~~~ 194 (398)
T PRK03244 115 ANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVDDDTAAVFLEPIQG 194 (398)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhcCCeEEEEEecccC
Confidence 9999998776666 5677778899887544332 232211111100 000 1278999999877889999998999
Q ss_pred CcccCCCHHH-HHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhh
Q 013883 254 PTGKMFTREE-LNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL 332 (434)
Q Consensus 254 PTG~~~~~e~-l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~ 332 (434)
|+|.+++.++ +++|.++|++||+++|+||+|.+|.+.+....+......+| +.+|||.+| +|+|+||+++++++
T Consensus 195 ~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pD----i~t~sK~l~-~G~~ig~~~~~~~~ 269 (398)
T PRK03244 195 EAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPD----VVTLAKGLG-GGLPIGACLAFGPA 269 (398)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCC----EEEEchhhh-CCcccEEEEEcHHH
Confidence 9999987655 99999999999999999999998766554332222211223 448899999 99999999999998
Q ss_pred HHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEee--cCCeeEEEeeecCCCCCC
Q 013883 333 TWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVF--PSSGTYFVVVDHTPFGHE 410 (434)
Q Consensus 333 ~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~~~ 410 (434)
++.+.......+++.+++.+.++.++|+..++ ++..++++++++.+++.|+++++... ....|.++|+.+.+ .
T Consensus 270 ~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~v~g~g~~~~i~~~~---~ 344 (398)
T PRK03244 270 ADLLTPGLHGSTFGGNPVACAAALAVLDTIAS--EGLLENAERLGEQLRAGIEALGHPLVDHVRGRGLLLGIVLTA---P 344 (398)
T ss_pred HhhccCCCCcCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhcCCCceeeEeeccEEEEEEEec---c
Confidence 88776544556788999999999999874221 23456677778888888888655321 22356677777632 1
Q ss_pred CHHHHHHHHHHhcCeEEECC
Q 013883 411 TDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 411 ~~~~~~~~Ll~~~GV~v~pG 430 (434)
...+++++|++ +||.+.|.
T Consensus 345 ~~~~~~~~l~~-~Gv~~~~~ 363 (398)
T PRK03244 345 VAKAVEAAARE-AGFLVNAV 363 (398)
T ss_pred HHHHHHHHHHH-CCeEEeec
Confidence 35678888866 49999874
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-25 Score=220.12 Aligned_cols=296 Identities=18% Similarity=0.174 Sum_probs=206.4
Q ss_pred CeeEeCCC-CCCCCCcHHHHHHHHHHHHcCCCC-------CCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 110 GAINLGQG-FPNFDGPDFVKDAAIQAIRDGKNQ-------YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 110 ~~i~l~~g-~p~~~~~~~v~~~~~~~~~~~~~~-------Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
..++|+.+ |.++..+|.+++++.++++..... |.......+|+++++++++ . +. .+++++| ++
T Consensus 46 ~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g----~---~~-~l~~~sG-~~ 116 (402)
T TIGR01821 46 DVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHG----K---ES-ALVFTSG-YV 116 (402)
T ss_pred eEEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhC----C---Ce-EEEECch-HH
Confidence 57888776 999999999999999998763221 1111123456666666654 1 22 4555555 88
Q ss_pred HHHHHHHHccC--CCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc---c-CCcEEEecCCCCCc
Q 013883 182 AIAATILGLIN--PGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS---K-NTRAILMNTPHNPT 255 (434)
Q Consensus 182 ai~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~---~-~~~~i~~~~p~NPT 255 (434)
++..++..+.. +++.|+.....|......+...|+++..++.. |++++++.++ + ++++|++++|+||+
T Consensus 117 an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~~~~v~~e~~~~~~ 190 (402)
T TIGR01821 117 ANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRHN------DVAHLEKLLQSVDPNRPKIIAFESVYSMD 190 (402)
T ss_pred HHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECCC------CHHHHHHHHHhccCCCCeEEEEcCCCCCC
Confidence 88888887764 67777776667776777778888887665432 5667776664 2 57899999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCC-CCceEEEccCChhhccccceeeeEEeChhhHH
Q 013883 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM-YERTVTMNSLGKTFSLTGWKIGWAIAPPHLTW 334 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~-~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~ 334 (434)
|.+.+ +++|.++|++||+++|+||+|....++.....+....+. .+.+++++||||.+|++| ||+++++++++
T Consensus 191 G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~i~~~~~~~~ 264 (402)
T TIGR01821 191 GDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG---GYIAASRKLID 264 (402)
T ss_pred CCccC---HHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC---ceeecCHHHHH
Confidence 99986 677889999999999999999854444322222111111 123578899999999888 99999999998
Q ss_pred HHHHHhhcc--ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCH
Q 013883 335 GVRQAHSFL--TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETD 412 (434)
Q Consensus 335 ~l~~~~~~~--~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (434)
.++...... +.+.++..+.++.++|+..++. +.+++++.++++++.+.|+++|+++.++.++++. +.+.. ....
T Consensus 265 ~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~i~~-i~~~~--~~~a 340 (402)
T TIGR01821 265 AIRSYAPGFIFTTSLPPAIAAGATASIRHLKES-QDLRRAHQENVKRLKNLLEALGIPVIPNPSHIVP-VIIGD--AALC 340 (402)
T ss_pred HHHHhCcCceecCcCCHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCEEE-EEeCC--HHHH
Confidence 887654432 3345666777887888753322 4456667788999999999999988877777543 33321 0124
Q ss_pred HHHHHHHHHhcCeEEECC
Q 013883 413 IAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 413 ~~~~~~Ll~~~GV~v~pG 430 (434)
.+++++|++++||.+.|.
T Consensus 341 ~~~~~~L~~~~Gi~v~~~ 358 (402)
T TIGR01821 341 KKVSDLLLNKHGIYVQPI 358 (402)
T ss_pred HHHHHHHHhcCCEEEEeE
Confidence 578888877779999874
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=225.05 Aligned_cols=311 Identities=15% Similarity=0.142 Sum_probs=213.0
Q ss_pred cCCeeEeCCC--CCCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQG--FPNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g--~p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...|||..| +..+. .+|.+.+++.+++... ..|....+..++...+++.+.+..+. +.+ ++++++|+++|+.
T Consensus 35 G~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~-~v~~~~sgsea~~ 110 (413)
T cd00610 35 GNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKL-THFSLGFFYNEPAVELAELLLALTPE--GLD-KVFFVNSGTEAVE 110 (413)
T ss_pred CCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhC-cCccCcccCCHHHHHHHHHHHHhCCC--CCC-EEEEcCcHHHHHH
Confidence 3467999876 33444 6788999999988653 45555444567777788888777664 455 8999999999999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHHHcC-------------CEEEEEEcCC-----CCCCCCHHHHHhhccc---
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLSMAG-------------AKIKCITLRP-----PDFAIPIEELKSTISK--- 241 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G-------------~~~~~v~~~~-----~~~~~d~~~l~~~i~~--- 241 (434)
.+++.+. .++|+|++.++.|+++.......+ .+++.+|+++ +++..|++.+++.+++
T Consensus 111 ~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 190 (413)
T cd00610 111 AALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPE 190 (413)
T ss_pred HHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCC
Confidence 9998774 678999999999999665443322 2355566542 1244589999998876
Q ss_pred CCcEEEecCCCCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccc
Q 013883 242 NTRAILMNTPHNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTG 320 (434)
Q Consensus 242 ~~~~i~~~~p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G 320 (434)
++++++++..+|++|..+ +.+.+++|.++|++||+++|+||+|.++...+...........++ +.|+||.++ .|
T Consensus 191 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d----~~t~sK~l~-~g 265 (413)
T cd00610 191 EVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPD----IVTLGKGLG-GG 265 (413)
T ss_pred CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCC----eEEEccccc-Cc
Confidence 345555555577779866 677799999999999999999999998754443222221211122 458999999 58
Q ss_pred ceeeeEEeChhhHHHH--HHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC----CCEeecC
Q 013883 321 WKIGWAIAPPHLTWGV--RQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV----GFKVFPS 394 (434)
Q Consensus 321 ~R~G~~~~~~~~~~~l--~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~ 394 (434)
+|+||+++++++++.+ .......+++.+++.+.++.++|+..++ +++.++++++.+.+.+.|+++ ++.....
T Consensus 266 ~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 343 (413)
T cd00610 266 LPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEE--EGLLENAAELGEYLRERLRELAEKHPLVGDVR 343 (413)
T ss_pred cccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhhCCcEEEee
Confidence 9999999999998876 3333345677888888888877764221 245566777777777777654 2222222
Q ss_pred CeeEEEeeecCCCCC------CCHHHHHHHHHHhcCeEEECC
Q 013883 395 SGTYFVVVDHTPFGH------ETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 395 ~~~~~~~~~~~~~~~------~~~~~~~~~Ll~~~GV~v~pG 430 (434)
..+.++++.+..... ....++++.|+++ ||.+.|+
T Consensus 344 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gv~v~~~ 384 (413)
T cd00610 344 GRGLMIGIELVKDRATKPPDKELAAKIIKAALER-GLLLRPS 384 (413)
T ss_pred cCceEEEEEEecCCCcCCcchHHHHHHHHHHHHC-CeEEeec
Confidence 334555665533210 1356678877655 9999997
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=217.84 Aligned_cols=297 Identities=18% Similarity=0.179 Sum_probs=205.8
Q ss_pred CCeeEeCCC-CCCCCCcHHHHHHHHHHHHcCCCC-------CCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH
Q 013883 109 HGAINLGQG-FPNFDGPDFVKDAAIQAIRDGKNQ-------YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180 (434)
Q Consensus 109 ~~~i~l~~g-~p~~~~~~~v~~~~~~~~~~~~~~-------Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~ 180 (434)
...++|+.. |.++.++|.+.+++.++++..... |.+.....+|+++++++++ . ++ .+++++| .
T Consensus 46 ~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g----~---~~-~~~~~sG-~ 116 (407)
T PRK09064 46 REVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG----K---EA-ALVFTSG-Y 116 (407)
T ss_pred ceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhC----C---Cc-EEEECcH-H
Confidence 367899776 899999999999999888763221 2222224456666666553 1 33 5666666 5
Q ss_pred HHHHHHHHHccC--CCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc----cCCcEEEecCCCCC
Q 013883 181 EAIAATILGLIN--PGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS----KNTRAILMNTPHNP 254 (434)
Q Consensus 181 ~ai~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~----~~~~~i~~~~p~NP 254 (434)
++...++..+.. +++.|+.....|......+...|+++..++.. |++.+++.++ +++++|++++|+||
T Consensus 117 ~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~~~~v~~~~v~s~ 190 (407)
T PRK09064 117 VSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRHN------DVAHLEELLAAADPDRPKLIAFESVYSM 190 (407)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECCC------CHHHHHHHHHhccCCCCeEEEEeCCCCC
Confidence 676666666554 77777666666777767777788887665532 6777777765 46789999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCC-CCceEEEccCChhhccccceeeeEEeChhhH
Q 013883 255 TGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM-YERTVTMNSLGKTFSLTGWKIGWAIAPPHLT 333 (434)
Q Consensus 255 TG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~-~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~ 333 (434)
+|.+.+ +++|.++|++||+++|+||+|....++.....+....+. .+.+++++||||.||++| ||++++++++
T Consensus 191 ~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~~~~~~~~~ 264 (407)
T PRK09064 191 DGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMG---GYIAGSAALV 264 (407)
T ss_pred CccccC---HHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhccC---ceEecCHHHH
Confidence 999886 677888999999999999999844344322222222121 233688899999999887 9999999999
Q ss_pred HHHHHHhhcc--ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCC
Q 013883 334 WGVRQAHSFL--TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHET 411 (434)
Q Consensus 334 ~~l~~~~~~~--~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (434)
+.++...... +.+.++..+.++.++|+..++. ...+++++++++++.+.|+++|+++.++.++++ ++.+.. ...
T Consensus 265 ~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~iv-~i~~~~--~~~ 340 (407)
T PRK09064 265 DAVRSYAPGFIFTTSLPPAIAAAALASIRHLKES-NEERERHQERAAKLKAALDAAGIPVMPNESHIV-PVMVGD--PEK 340 (407)
T ss_pred HHHHHhCccccccCcCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCEE-EEEeCC--HHH
Confidence 8887654432 2345555667776777643221 334678889999999999999998877766654 443321 113
Q ss_pred HHHHHHHHHHhcCeEEECC
Q 013883 412 DIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 412 ~~~~~~~Ll~~~GV~v~pG 430 (434)
..+++++|++++||.+.+.
T Consensus 341 ~~~l~~~L~~~~gi~v~~~ 359 (407)
T PRK09064 341 CKKASDMLLEEHGIYVQPI 359 (407)
T ss_pred HHHHHHHHHHhCCEEEeeE
Confidence 5678888887779999874
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-25 Score=219.14 Aligned_cols=297 Identities=16% Similarity=0.088 Sum_probs=206.2
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCC--CC------cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 113 NLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARG--HG------VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 113 ~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~--~G------~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
.|..+..+ +.++.+.+++.+.++.....+... .| +.++|+.++++++ .+++ +|++++|+++++.
T Consensus 3 yld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~-~i~~~~g~t~a~~ 74 (381)
T PRK02948 3 YLDYAATT-PMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIG------GEEQ-GIYFTSGGTESNY 74 (381)
T ss_pred eccCCCCC-CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhC------CCCC-eEEEeCcHHHHHH
Confidence 34444333 346667888877765422111111 11 2345555665554 4566 8999999999999
Q ss_pred HHHHHcc----CCCCeEEEcCCCchh---HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCccc
Q 013883 185 ATILGLI----NPGDEVILFAPFYDS---YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGK 257 (434)
Q Consensus 185 ~~~~~l~----~~gd~Vlv~~p~y~~---~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~ 257 (434)
.++.+++ ++||.|++....|+. +...++..|++++.+++++ ++.+|++.+++++++++++|++++|+||||.
T Consensus 75 ~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~ 153 (381)
T PRK02948 75 LAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDK-SGLIRLVDLERAITPDTVLASIQHANSEIGT 153 (381)
T ss_pred HHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCC-CCCCCHHHHHHhcCCCCEEEEEECCcCCcEe
Confidence 8888775 578999998866655 4455677899999999874 5789999999999889999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhH-HHH
Q 013883 258 MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT-WGV 336 (434)
Q Consensus 258 ~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~-~~l 336 (434)
+++ +++|.++|+++|+++|+|+++... .....+. ..+..+++.|++|.+|.+| +|++++++++. ..+
T Consensus 154 ~~~---~~~I~~l~~~~~~~vivD~~~~~g---~~~~~~~----~~~~d~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~ 221 (381)
T PRK02948 154 IQP---IAEIGALLKKYNVLFHSDCVQTFG---KLPIDVF----EMGIDSLSVSAHKIYGPKG--VGAVYINPQVRWKPV 221 (381)
T ss_pred ehh---HHHHHHHHHHcCCEEEEEChhhcc---ccccCcc----cCCCCEEEecHHhcCCCCc--EEEEEEcCCCCCCCc
Confidence 986 556889999999999999765432 1111211 1245688899999999888 89999887651 111
Q ss_pred HH----HhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCC-eeEEE--eeecCCCCC
Q 013883 337 RQ----AHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSS-GTYFV--VVDHTPFGH 409 (434)
Q Consensus 337 ~~----~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~--~~~~~~~~~ 409 (434)
.. ...+..++++.+++.++..+|+...+++++.++++++.++.+++.|+++|+++.+.. .++.. .+.+...+.
T Consensus 222 ~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~~~ 301 (381)
T PRK02948 222 FPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKGI 301 (381)
T ss_pred ccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeCCC
Confidence 10 112245678888899998988875567888899999999999999999887665432 22211 111111122
Q ss_pred CCHHHHHHHHHHhcCeEEECCCC
Q 013883 410 ETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 410 ~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
+..++..+| +++||.+.+|+.
T Consensus 302 -~~~~~~~~l-~~~gI~v~~g~~ 322 (381)
T PRK02948 302 -EGQYTMLEC-NRRGIAISTGSA 322 (381)
T ss_pred -CHHHHHHhc-ccCCEEEEchHh
Confidence 356677776 566999998863
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=212.49 Aligned_cols=258 Identities=17% Similarity=0.205 Sum_probs=184.3
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC-
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP- 226 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~- 226 (434)
+.++++.++++++ + + ++++++|+++++..++.+++++||+|+++.+.|......+...|++++.++.+++
T Consensus 46 ~~~l~~~la~~~g------~--~-~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 116 (361)
T cd06452 46 IKDFHHDLAEFLG------M--D-EARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHP 116 (361)
T ss_pred HHHHHHHHHHHcC------C--c-eEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCC
Confidence 4577888888775 2 4 7999999999999999999999999999999988877788999999999998763
Q ss_pred CCCCCHHHHHhhcc-------cCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCC
Q 013883 227 DFAIPIEELKSTIS-------KNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASL 299 (434)
Q Consensus 227 ~~~~d~~~l~~~i~-------~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~ 299 (434)
++.+|++.++++++ +++++|++++|+||||... ++++|+++|+++|+++|+|++|..... ......
T Consensus 117 ~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~---~~~~i~~~~~~~~~~vivD~a~~~g~~---~~~~~~- 189 (361)
T cd06452 117 EYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLH---DAKKIAKVCHEYGVPLLLNGAYTVGRM---PVSGKE- 189 (361)
T ss_pred CcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeec---cHHHHHHHHHHcCCeEEEECCcccCCc---CCCHHH-
Confidence 46899999999886 3688999999999999875 577899999999999999999974221 111111
Q ss_pred CCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccc--------cCCchHHHHHHHHHHhCChHHHHHHHH
Q 013883 300 PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT--------FATSTPMQWAATAALRAPETYYEELKR 371 (434)
Q Consensus 300 ~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~--------~~~~~~~q~a~~~~L~~~~~~~~~~~~ 371 (434)
.+..+++.|++|.++ ++.|+||+++++++++++.+.+.... .+.....+.++..+++...++++...+
T Consensus 190 ---~~~d~~~~s~~K~l~-~~~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 265 (361)
T cd06452 190 ---LGADFIVGSGHKSMA-ASAPIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDE 265 (361)
T ss_pred ---cCCCEEEecCCcccc-CCCCeEEEEECHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 235689999999998 56699999999999888766543210 111112233344444332233333333
Q ss_pred HHHHHHHHHHHHhhhC-CCEee---cCCeeEEEeeecCCC------CCCCHHHHHHHHHHhcCeEEE
Q 013883 372 DYSAKKAILVEGLNAV-GFKVF---PSSGTYFVVVDHTPF------GHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 372 ~~~~~~~~l~~~L~~~-g~~~~---~~~~~~~~~~~~~~~------~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
. .++++++++.|+++ |++++ +...++ +.++.... ...+..++.++|+++ ||.+.
T Consensus 266 ~-~~~~~~l~~~L~~l~g~~v~~~~~~~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-gI~~~ 329 (361)
T cd06452 266 E-VEKARWFVAELEKIEGIKQLGEKPKNHDL-MFFETPSFDEIAKKHKRRGYFLYSELKKR-GIHGI 329 (361)
T ss_pred H-HHHHHHHHHHHhcCCCeEEECCCCCCCce-EEEEcCCcchhhhhccccchhHHHHHHHc-CceEE
Confidence 2 34557888999998 88886 233443 34443211 011234688888665 99864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-24 Score=201.66 Aligned_cols=326 Identities=19% Similarity=0.235 Sum_probs=198.3
Q ss_pred hccccHHHHHHHHhhcCCeeEeCCCCCCCCCcHHHHHHHHHHHH------c--CCCCC-CCCCCcHHHHHHHHHHHHhhc
Q 013883 93 KFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIR------D--GKNQY-ARGHGVPEFNSAIASRFKKDS 163 (434)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~------~--~~~~Y-~~~~G~~~lr~~ia~~l~~~~ 163 (434)
+.......++.++....-.+||+-|.|....-.. -..+..... + +.-.| +...|++|+|+..+++++
T Consensus 8 ~~~~~l~~~y~~~ka~~L~LdmtRGKPs~eQLdL-S~~lL~~~~~~~~~~dG~D~RNY~G~l~Gipe~r~l~a~llg--- 83 (425)
T PF12897_consen 8 ALLAELRKQYEELKAKGLKLDMTRGKPSPEQLDL-SNPLLDLPGSSDYLADGTDCRNYPGGLDGIPEARELFAELLG--- 83 (425)
T ss_dssp HCHHHHHHHHHHHHHTT--EES---S--HHHHHG-GGGGGGSSTTCCBECTTEBTTSS-S-SS--HHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCCCHHHHhh-hHHHhcCCCCccccCCCccccCCCCccCChHHHHHHHHHHhC---
Confidence 3333444556666666667899988876211000 000000000 1 13479 888999999999999998
Q ss_pred CCCCCCCCcEEEc-CChHHHHHHHHHH-c----c--------CCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCC
Q 013883 164 GLEVDPEKEVTVT-SGCTEAIAATILG-L----I--------NPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFA 229 (434)
Q Consensus 164 g~~~~~~~~i~~t-~G~~~ai~~~~~~-l----~--------~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~ 229 (434)
++++ +|++. |++...++-++.. + . .+.-+.++|.|.|.-|..+.+.+|++.+.||+. +.+
T Consensus 84 ---v~~~-~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~~Giemi~VpM~--~dG 157 (425)
T PF12897_consen 84 ---VPPE-NVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITEHFGIEMIPVPMT--EDG 157 (425)
T ss_dssp ---S-GG-GEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHHHHCT-EEEEEEEE--TTE
T ss_pred ---CCHH-HEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHHHhhCcEEEecCCC--CCC
Confidence 8888 77775 4444555444332 2 1 112468999999999999999999999999999 467
Q ss_pred CCHHHHHhhccc--CCcEEEec-CCCCCcccCCCHHHHHHHHHH-HHHcCcEEEEcCcCCcccc-CC-CCc---cccCC-
Q 013883 230 IPIEELKSTISK--NTRAILMN-TPHNPTGKMFTREELNVIASL-CIENDVLVFSDEVYDKLAF-EM-DHI---SIASL- 299 (434)
Q Consensus 230 ~d~~~l~~~i~~--~~~~i~~~-~p~NPTG~~~~~e~l~~i~~l-a~~~~~~iI~Deay~~~~~-~~-~~~---~~~~~- 299 (434)
+|+|.+++++.+ ..|.|+.+ .-+||||.++|.|..++++.+ +...|+.|+.|++|.--.+ +. ... .+...
T Consensus 158 PDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~ 237 (425)
T PF12897_consen 158 PDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDAC 237 (425)
T ss_dssp E-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHH
T ss_pred CCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHH
Confidence 899999999854 45666543 339999999999999999987 3457999999999986655 22 111 12111
Q ss_pred --CCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCCh----HHHHHHHHHH
Q 013883 300 --PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPE----TYYEELKRDY 373 (434)
Q Consensus 300 --~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~----~~~~~~~~~~ 373 (434)
.+.+++++.+.|.||.- ++|-+++++.++++-++.+++.....+.++.-..|..-...+.+.+ .++++.++.+
T Consensus 238 ~~AGnpdrv~~F~STSKIT-f~GaGva~~aaS~~Nl~~~~~~~~~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il 316 (425)
T PF12897_consen 238 AKAGNPDRVYVFASTSKIT-FPGAGVAFFAASEANLAWIKKHLSVQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAIL 316 (425)
T ss_dssp HHTT-TTSEEEEEESTTTS--TTSS-EEEEE-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHH
T ss_pred HHcCCCCeEEEEecccccc-cCCcceeeeecCHHHHHHHHHHhcCceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence 45678999999999986 4999999999999999999888777889999999999999999854 4555556666
Q ss_pred HHHHHHHHHHhhh-----CC-CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC-CCCC
Q 013883 374 SAKKAILVEGLNA-----VG-FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP-TSVF 433 (434)
Q Consensus 374 ~~~~~~l~~~L~~-----~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p-G~~F 433 (434)
+-+.+...+.|++ .| ..|..|.||||++++..+ | .+.+++ .|.+++||.++| |+.|
T Consensus 317 ~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~-G--~AkrvV-~lakeAGV~LT~AGAtf 379 (425)
T PF12897_consen 317 RPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLD-G--TAKRVV-ELAKEAGVALTPAGATF 379 (425)
T ss_dssp HHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEEST-T---HHHHH-HHHHHTTEE---TTTTS
T ss_pred hhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCC-C--hHHHHH-HHHHHhCceeCCCCCCC
Confidence 6666666665544 33 478899999999998754 2 344554 466888999999 7766
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-24 Score=214.84 Aligned_cols=297 Identities=18% Similarity=0.170 Sum_probs=204.8
Q ss_pred eeEeCCCCCCCCCcHHHHHHHHHHHHcCC----CCCCCCCCc----HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 111 AINLGQGFPNFDGPDFVKDAAIQAIRDGK----NQYARGHGV----PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 111 ~i~l~~g~p~~~~~~~v~~~~~~~~~~~~----~~Y~~~~G~----~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
.+.|..+-+.. +++.+++++.+.+.+.. ..|....+. .++|+.++++++ .+++ +|++++|++++
T Consensus 18 ~~yl~~~~~~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~------~~~~-~v~~~~~~t~~ 89 (397)
T TIGR01976 18 RVFFDNPAGTQ-IPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLN------ADPP-EVVFGANATSL 89 (397)
T ss_pred eEEecCCccCC-CCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcC------CCCC-eEEEeCCHHHH
Confidence 57787765553 55667888888775421 234443343 355666666554 3455 79999999999
Q ss_pred HHHHHHHc---cCCCCeEEEcCCCchhHH----HHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCc
Q 013883 183 IAATILGL---INPGDEVILFAPFYDSYE----ATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPT 255 (434)
Q Consensus 183 i~~~~~~l---~~~gd~Vlv~~p~y~~~~----~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPT 255 (434)
+..++.++ +++||+|++.+|.|++.. ..++..|++++.++.+++++.+|++.+++++++++++|++++|+|||
T Consensus 90 l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~n~t 169 (397)
T TIGR01976 90 TFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTL 169 (397)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCCceEEEEeCCCCCC
Confidence 98777665 689999999999887643 45677899999999886568899999999999899999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHH
Q 013883 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG 335 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~ 335 (434)
|.+.+ +++|.++|++||+++|+|+++... ... ..+.. .+..+++.|++|.+| +|+|+++++++++++
T Consensus 170 G~~~~---~~~i~~~~~~~~~~~ivD~a~~~~---~~~---~~~~~-~~~d~~~~s~~K~~g---~~~G~l~~~~~~~~~ 236 (397)
T TIGR01976 170 GSIVD---LAAITELVHAAGALVVVDAVHYAP---HGL---IDVQA-TGADFLTCSAYKFFG---PHMGILWGRPELLMN 236 (397)
T ss_pred CccCC---HHHHHHHHHHcCCEEEEehhhhcc---ccC---CCHHH-cCCCEEEEechhhcC---CceEEEEEcHHHHhh
Confidence 99985 777999999999999999997531 111 11211 233466789999875 469999999998876
Q ss_pred HHHHhhcc----------ccCCchHH---HHHHHHHHhCCh------------HHHHHHHHHHHHHHHHHHHHhhhCC-C
Q 013883 336 VRQAHSFL----------TFATSTPM---QWAATAALRAPE------------TYYEELKRDYSAKKAILVEGLNAVG-F 389 (434)
Q Consensus 336 l~~~~~~~----------~~~~~~~~---q~a~~~~L~~~~------------~~~~~~~~~~~~~~~~l~~~L~~~g-~ 389 (434)
+....... ..+++... ..++...+.+.. ++.++.+++..+.++++++.|++++ +
T Consensus 237 l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~ 316 (397)
T TIGR01976 237 LPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGV 316 (397)
T ss_pred CCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 65432211 11222222 233333333211 1356667777888899999998875 8
Q ss_pred EeecC-----CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 390 KVFPS-----SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 390 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+++.+ .++++ .+.+. +. +..++.++|.+ +||.+..|..|
T Consensus 317 ~~~~~~~~~~~~~~~-~~~~~--~~-~~~~l~~~L~~-~gI~v~~~~~~ 360 (397)
T TIGR01976 317 TLYGVARLAARVPTV-SFTVH--GL-PPQRVVRRLAD-QGIDAWAGHFY 360 (397)
T ss_pred EEeCCCCccCCCceE-EEEeC--Cc-CHHHHHHHHHH-CCeEEEeCccc
Confidence 87654 45543 34432 22 46678888855 59999987543
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=215.19 Aligned_cols=293 Identities=18% Similarity=0.169 Sum_probs=204.8
Q ss_pred cCCeeEeCCC-CCCCCCcHHHHHHHHHHHHcC---C---CCCCC-CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCCh
Q 013883 108 KHGAINLGQG-FPNFDGPDFVKDAAIQAIRDG---K---NQYAR-GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGC 179 (434)
Q Consensus 108 ~~~~i~l~~g-~p~~~~~~~v~~~~~~~~~~~---~---~~Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~ 179 (434)
+...+||+.. |.++...|.+++++.+++.+. . ..|.. .....+|++.++++++ .+ .+++++|+
T Consensus 53 g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g--------~~-~~~~~~sG 123 (407)
T PRK07179 53 GPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTG--------FE-SCLLCQSG 123 (407)
T ss_pred CCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhC--------CC-cEEEECCH
Confidence 3457899765 899999999999999988652 1 11211 1124567777777764 24 56789999
Q ss_pred HHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccC
Q 013883 180 TEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKM 258 (434)
Q Consensus 180 ~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~ 258 (434)
++|+..+++++..+||.|++..+.|......+...|++++.++. .|++.+++++++ ++++|++++|+||||.+
T Consensus 124 ~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i 197 (407)
T PRK07179 124 WAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH------NDVDHLRRQIERHGPGIIVVDSVYSTTGTI 197 (407)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecC------CCHHHHHHHHHhcCCeEEEECCCCCCCCcc
Confidence 99999999999999999999999999888888889988766543 389999999976 57888899999999999
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCcc-ccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHH
Q 013883 259 FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHIS-IASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVR 337 (434)
Q Consensus 259 ~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~-~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~ 337 (434)
.+ +++|.++|+++|+++|+||+|....++..... +..+.......+++.|++|.+| .|+||+++++++++.+.
T Consensus 198 ~p---l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g---~~~G~l~~~~~~~~~~~ 271 (407)
T PRK07179 198 AP---LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFA---GRAGIITCPRELAEYVP 271 (407)
T ss_pred cc---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhh---ccCeEEEeCHHHHHHHH
Confidence 97 56788999999999999999986544332222 1122111122488899999997 26999999998887776
Q ss_pred HHhhcccc--CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHH
Q 013883 338 QAHSFLTF--ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAF 415 (434)
Q Consensus 338 ~~~~~~~~--~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (434)
.......+ +.+.....++.++|+.. +..++.+++++++++++++.|+++|+++. +.+. ++++.+.. ..+...+
T Consensus 272 ~~~~~~~~~~t~~~~~~aa~~aal~~~-~~~~~~~~~l~~~~~~l~~~L~~~g~~v~-~~~~-i~~l~~~~--~~~~~~~ 346 (407)
T PRK07179 272 FVSYPAIFSSTLLPHEIAGLEATLEVI-ESADDRRARLHANARFLREGLSELGYNIR-SESQ-IIALETGS--ERNTEVL 346 (407)
T ss_pred HhCcCeeeCCCCCHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCC-EEEEEeCC--HHHHHHH
Confidence 54432222 22223233333445432 22345678899999999999999888776 4444 44554321 0123455
Q ss_pred HHHHHHhcCeEE
Q 013883 416 CEYLIKEVGVVA 427 (434)
Q Consensus 416 ~~~Ll~~~GV~v 427 (434)
.+.|. ++||.+
T Consensus 347 ~~~L~-~~GI~~ 357 (407)
T PRK07179 347 RDALE-ERNVFG 357 (407)
T ss_pred HHHHH-HCCceE
Confidence 55664 569973
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=217.43 Aligned_cols=300 Identities=17% Similarity=0.158 Sum_probs=207.7
Q ss_pred cCCeeEeCCC----CCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 108 KHGAINLGQG----FPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 108 ~~~~i~l~~g----~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
+...|||..| +-++ .+|.+.+++.+++.+... +...... +...++++.+.+..+ .+ .+++++++++|+
T Consensus 39 G~~~iD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~-~~~~~~~-~~~~~l~~~l~~~~~----~~-~~~~~~sGseA~ 110 (403)
T PRK05093 39 GKEYIDFAGGIAVTALGH-CHPALVKALKEQGEKLWH-ISNVFTN-EPALRLAKKLIDATF----AE-RVFFANSGAEAN 110 (403)
T ss_pred CCEEEEcCcCHHhccCCC-CCHHHHHHHHHHHHhcCc-ccCccCC-HHHHHHHHHHHhhCC----CC-EEEEeCchHHHH
Confidence 3357898766 3344 678888889888875321 1111122 233455666654432 24 799999999999
Q ss_pred HHHHHHcc--------CCCCeEEEcCCCchhHHHHH-HHcC------------CEEEEEEcCCCCCCCCHHHHHhhcccC
Q 013883 184 AATILGLI--------NPGDEVILFAPFYDSYEATL-SMAG------------AKIKCITLRPPDFAIPIEELKSTISKN 242 (434)
Q Consensus 184 ~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~-~~~G------------~~~~~v~~~~~~~~~d~~~l~~~i~~~ 242 (434)
..+++... ...+.|+..+-.|++..... ...| .+++.++.. |++.+++.+.++
T Consensus 111 e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~l~~~l~~~ 184 (403)
T PRK05093 111 EAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFN------DLAAVKAVIDDH 184 (403)
T ss_pred HHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCC------CHHHHHHHhcCC
Confidence 99987542 12356888888777754322 2211 112222221 789999999878
Q ss_pred CcEEEecCCCCCcccCC--CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccc
Q 013883 243 TRAILMNTPHNPTGKMF--TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTG 320 (434)
Q Consensus 243 ~~~i~~~~p~NPTG~~~--~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G 320 (434)
+++|+++ |.||+|-++ +.+.+++|+++|++||+++|+||+|.++.+.|.......+...++ +.||||.++ +|
T Consensus 185 ~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd----i~s~sK~l~-~G 258 (403)
T PRK05093 185 TCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPD----ILTSAKALG-GG 258 (403)
T ss_pred eEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCC----EEEeccccc-CC
Confidence 8888877 888887654 889999999999999999999999999877765433222221233 679999999 99
Q ss_pred ceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC----CEeecCCe
Q 013883 321 WKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG----FKVFPSSG 396 (434)
Q Consensus 321 ~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~ 396 (434)
+|+||+++++++++.+.......+++.+++.|.++.++|+... ..++.++++++++.+.+.|++++ +....+.+
T Consensus 259 ~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 336 (403)
T PRK05093 259 FPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIIN--TPEVLEGVKARRQRFVDGLQKINQKYGVFSEIRGM 336 (403)
T ss_pred cceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeC
Confidence 9999999999998888764455677889999999999876432 13456788889999999998763 22334456
Q ss_pred eEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 397 TYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
|+++|+.+.+....++.+++++|+++ ||.+.|+
T Consensus 337 G~~~~~~l~~~~~~~~~~~~~~l~~~-Gv~v~~~ 369 (403)
T PRK05093 337 GLLIGAELKPQYKGRARDFLNAAAEE-GVMVLVA 369 (403)
T ss_pred ceEEEEEecCcchhHHHHHHHHHHHC-CeEEecC
Confidence 78888877432112366889888775 9999984
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-24 Score=209.29 Aligned_cols=269 Identities=17% Similarity=0.168 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchh--HHHHHHHcCCEEEEEEcCCCC
Q 013883 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDS--YEATLSMAGAKIKCITLRPPD 227 (434)
Q Consensus 150 ~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~G~~~~~v~~~~~~ 227 (434)
++.+.+.+.+.+..|.+-+.. .|++++|+++++..++..++.+||+|++.++.+++ +...++..|++++.++.++ +
T Consensus 31 ~~~~~~~~~la~~~~~~~~~~-~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~~-~ 108 (355)
T TIGR03301 31 DVTDQVRDRLLALAGGDDNHT-CVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGERLAKICEYLGIPHTDLNFSE-Y 108 (355)
T ss_pred HHHHHHHHHHHHHhcCCCCCc-EEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhHHHHHHHHcCCceEEEecCC-C
Confidence 444444444444444432222 58889999999999999999888887766655443 4567788999999999864 5
Q ss_pred CCCCHHHHHhhccc--CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCc
Q 013883 228 FAIPIEELKSTISK--NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYER 305 (434)
Q Consensus 228 ~~~d~~~l~~~i~~--~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~ 305 (434)
+.+|++.+++++++ +.+.+++++++||||...+ +++|+++|++|++++|+|+++... .....+.. .+.
T Consensus 109 ~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~livD~~~s~g---~~~~~~~~----~~~ 178 (355)
T TIGR03301 109 EPPDLNRIEEALAADPDITHVATVHHETTTGILNP---LEAIAKVARSHGAVLIVDAMSSFG---AIPIDIEE----LDV 178 (355)
T ss_pred CCCCHHHHHHHHHhCCCceEEEEEecCCcccchhH---HHHHHHHHHHcCCEEEEEeccccC---Ccccchhh----cCc
Confidence 78999999999875 4566777889999999885 678999999999999999876542 11222221 245
Q ss_pred eEEEccCChhh-ccccceeeeEEeChhhHHHHHHHh-----------------hccccCCchHHHHHHHHHHhCCh--HH
Q 013883 306 TVTMNSLGKTF-SLTGWKIGWAIAPPHLTWGVRQAH-----------------SFLTFATSTPMQWAATAALRAPE--TY 365 (434)
Q Consensus 306 ~i~i~S~SK~~-g~~G~R~G~~~~~~~~~~~l~~~~-----------------~~~~~~~~~~~q~a~~~~L~~~~--~~ 365 (434)
.+++.|++|.+ |++| +||+++++++++.+.... ....++++.+.+.++..+|+... .+
T Consensus 179 d~~~~s~~K~l~~~~G--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~ 256 (355)
T TIGR03301 179 DALIASANKCLEGVPG--FGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGG 256 (355)
T ss_pred cEEEecCCcccccCCc--eeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHccc
Confidence 57899999987 5455 799999999887765210 11245667777777777776432 23
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCEeecC---CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 366 YEELKRDYSAKKAILVEGLNAVGFKVFPS---SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+++.+++++++++++++.|+++|+++..+ .+++++|+.+++....+..++.++|.+ .||.+.||..+
T Consensus 257 ~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~i~~~~~~ 326 (355)
T TIGR03301 257 VPARIARYRRNRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKE-RGFVIYPGKLT 326 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHH-CCEEEECCccc
Confidence 67778889999999999999999886533 245566777643221234577777755 59999998643
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=219.09 Aligned_cols=297 Identities=19% Similarity=0.269 Sum_probs=206.6
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCC--CcHHHHHHHH---HHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGH--GVPEFNSAIA---SRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~--G~~~lr~~ia---~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
..++|+.|.+++..+..+.+..... +....|.+.. -...+++++. +.+.+.+|.+ .+ ++++++|+++++.
T Consensus 69 ~~~~lg~g~~~~~~p~~~~~~~~~~--~~~~~y~~~~~~~~~g~~~~~~e~~~~la~l~g~~--~~-~v~~~~g~t~~~~ 143 (447)
T PRK00451 69 YPSFLGAGAYDHYIPAVVDHIISRS--EFYTAYTPYQPEISQGTLQAIFEYQTMICELTGMD--VA-NASMYDGATALAE 143 (447)
T ss_pred CcccCcccccCCcCcHHHHHHHhch--hHHHhcCCCCCccchHHHHHHHHHHHHHHHHhCCC--cc-eEEecCcHHHHHH
Confidence 5678899998888887776655333 2223465511 1233555555 4446667753 45 7999999999999
Q ss_pred HHHHHcc-CCCCeEEEcCCCchhHHHHHHH----cCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCC
Q 013883 185 ATILGLI-NPGDEVILFAPFYDSYEATLSM----AGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMF 259 (434)
Q Consensus 185 ~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~----~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~ 259 (434)
.++.++. .+||+|+++++.|+.+...+.. .|++++.+++++ + .+|++.+++++++++++|++++| ||||.+.
T Consensus 144 ~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~-~-~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~ 220 (447)
T PRK00451 144 AALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYED-G-VTDLEALEAAVDDDTAAVVVQYP-NFFGVIE 220 (447)
T ss_pred HHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCC-C-CCCHHHHHHhcCCCeEEEEEECC-CCCCeeC
Confidence 9888874 7999999999999998877654 699999999875 4 89999999999999999999999 8999986
Q ss_pred CHHHHHHHHHHHHHcCcEEEE--cCcCCccccCCCCccccCCCCCCCceEEEc---cCChhhccccceeeeEEeChhhHH
Q 013883 260 TREELNVIASLCIENDVLVFS--DEVYDKLAFEMDHISIASLPGMYERTVTMN---SLGKTFSLTGWKIGWAIAPPHLTW 334 (434)
Q Consensus 260 ~~e~l~~i~~la~~~~~~iI~--Deay~~~~~~~~~~~~~~~~~~~~~~i~i~---S~SK~~g~~G~R~G~~~~~~~~~~ 334 (434)
++++|+++|+++|+++|+ |.+..++. . .+...+..+++. +|||.+.+.|+|+||+++++++++
T Consensus 221 ---~l~~I~~~a~~~~~~~iv~~d~~~~g~~-----~----~~~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~ 288 (447)
T PRK00451 221 ---DLEEIAEIAHAGGALFIVGVDPVSLGLL-----K----PPGEYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVR 288 (447)
T ss_pred ---CHHHHHHHHHHCCCEEEEEcChHHhccC-----C----CcccCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHh
Confidence 477799999999999998 43322111 0 011223334444 788888888999999999988877
Q ss_pred HH----------------------------HHHhhccccCCchHHH-HHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHh
Q 013883 335 GV----------------------------RQAHSFLTFATSTPMQ-WAATAALR-APETYYEELKRDYSAKKAILVEGL 384 (434)
Q Consensus 335 ~l----------------------------~~~~~~~~~~~~~~~q-~a~~~~L~-~~~~~~~~~~~~~~~~~~~l~~~L 384 (434)
.+ +..+.....+.+...+ .+++.+|. ..+++++++++++.++++++.+.|
T Consensus 289 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L 368 (447)
T PRK00451 289 QMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERL 368 (447)
T ss_pred hCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 1111111222222233 33333444 245678999999999999999999
Q ss_pred hhC-CCEeecCCeeEEEe--eecCCCCCCCHHHHHHHHHHhcCeE-EECCCCC
Q 013883 385 NAV-GFKVFPSSGTYFVV--VDHTPFGHETDIAFCEYLIKEVGVV-AIPTSVF 433 (434)
Q Consensus 385 ~~~-g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Ll~~~GV~-v~pG~~F 433 (434)
+++ |+++. ++.+|.+ +++ +. +..+++++|+++ ||. ..+++.|
T Consensus 369 ~~~~g~~~~--~~~~~~~~~v~~---~~-~~~~~~~~L~~~-gi~~~~~~~~~ 414 (447)
T PRK00451 369 AEIGGVELF--DGPFFNEFVVRL---PK-PAEEVNEALLEK-GILGGYDLGRY 414 (447)
T ss_pred hhcCCEEec--CCCeEEEEEEec---CC-CHHHHHHHHHhc-CCCCCcccccc
Confidence 987 67775 4455543 443 12 467899999876 554 3455544
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-24 Score=212.21 Aligned_cols=296 Identities=18% Similarity=0.204 Sum_probs=210.2
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCC-CCCC-C-------CCCcHHHHHHHHHHHHhhcCCCCC-CCCcEEEcCCh
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGK-NQYA-R-------GHGVPEFNSAIASRFKKDSGLEVD-PEKEVTVTSGC 179 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~-~~Y~-~-------~~G~~~lr~~ia~~l~~~~g~~~~-~~~~i~~t~G~ 179 (434)
+.+.|..+..+ +.|+.+.+++.+.+.+.. .... . ..++.++|+.++++++ .+ ++ +|++++|+
T Consensus 18 ~~~yld~~~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~------~~~~~-~v~~~~g~ 89 (403)
T TIGR01979 18 PLVYLDSAATS-QKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFIN------AASDE-EIVFTRGT 89 (403)
T ss_pred ceEEEeCcccc-CCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhC------cCCCC-eEEEeCCH
Confidence 56788887665 355667788877665421 1000 0 1134577888888776 34 45 89999999
Q ss_pred HHHHHHHHHHc----cCCCCeEEEcCCCchhH----HHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCC
Q 013883 180 TEAIAATILGL----INPGDEVILFAPFYDSY----EATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTP 251 (434)
Q Consensus 180 ~~ai~~~~~~l----~~~gd~Vlv~~p~y~~~----~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p 251 (434)
++++.+++.++ +++||+|+++++.|++. .......|++++.++.+ +++.+|++.+++++++++++|++++|
T Consensus 90 t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~l~~~i~~~~~lv~~~~~ 168 (403)
T TIGR01979 90 TESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD-DDGTLDLDDLEKLLTEKTKLVAITHV 168 (403)
T ss_pred HHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC-CCCCCCHHHHHHHhccCCeEEEEEcc
Confidence 99999988875 57899999999987763 45566789999999988 46789999999999999999999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh
Q 013883 252 HNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH 331 (434)
Q Consensus 252 ~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~ 331 (434)
+||||..++ +++|.++|+++|+++|+|++|..... ...+.. .+..+++.|++|.+|.+| +|+++++++
T Consensus 169 ~~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g~~---~~~~~~----~~~d~~~~s~~K~~gp~G--~g~l~~~~~ 236 (403)
T TIGR01979 169 SNVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVPHM---PVDVQA----LDCDFYVFSGHKMYGPTG--IGVLYGKEE 236 (403)
T ss_pred cccccccCC---HHHHHHHHHHcCCEEEEEchhhcCcc---ccCccc----cCCCEEEEecccccCCCC--ceEEEEchH
Confidence 999999996 56788999999999999999975321 111211 235688999999988666 899999988
Q ss_pred hHHHHHHHh---------------------hccccCCchHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHhhhC-C
Q 013883 332 LTWGVRQAH---------------------SFLTFATSTPMQWAATAALRAPET-YYEELKRDYSAKKAILVEGLNAV-G 388 (434)
Q Consensus 332 ~~~~l~~~~---------------------~~~~~~~~~~~q~a~~~~L~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g 388 (434)
+++.+.... ++...+++.....++..+++...+ ..++.+++..+.++.+.+.|+++ |
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g 316 (403)
T TIGR01979 237 LLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPG 316 (403)
T ss_pred HHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 776553111 011123444455566666653222 25667788888899999999887 7
Q ss_pred CEeecCC-----eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 389 FKVFPSS-----GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 389 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
++++.+. ++++.+ .+.. . +..++.+.| +++||.+.+|.
T Consensus 317 ~~~~~~~~~~~~~~~v~~-~~~~--~-~~~~~~~~L-~~~gI~v~~g~ 359 (403)
T TIGR01979 317 LRIYGPRDAEDRGGIISF-NVEG--V-HPHDVGTIL-DEEGIAVRSGH 359 (403)
T ss_pred EEEeCCCCccccCceEEE-EeCC--c-CHHHHHHHH-hhCCEEEcchh
Confidence 8887543 555443 3422 2 355676655 56799999875
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-24 Score=209.65 Aligned_cols=289 Identities=16% Similarity=0.143 Sum_probs=202.0
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCC
Q 013883 123 GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAP 202 (434)
Q Consensus 123 ~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p 202 (434)
.++.+.+++.+.+. .+.|. +..++.+.+.+.+.+.+|. ++++.+++++|+++++..++.+++++||+|++..+
T Consensus 10 ~~~~v~~a~~~~~~--~~~~~---~~~~~~~~~~~~la~~~g~--~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~ 82 (356)
T cd06451 10 VPPRVLKAMNRPML--GHRSP---EFLALMDEILEGLRYVFQT--ENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVN 82 (356)
T ss_pred CCHHHHHHhCCCcc--CCCCH---HHHHHHHHHHHHHHHHhcC--CCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecC
Confidence 45666666543321 12222 2234445555555555554 33325788888899999999999999999999998
Q ss_pred Cchh--HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEE
Q 013883 203 FYDS--YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVF 279 (434)
Q Consensus 203 ~y~~--~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI 279 (434)
.|+. +...++..|++++.++.++ ++.+|++.+++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|
T Consensus 83 ~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~---~~~i~~~a~~~~~~li 158 (356)
T cd06451 83 GVFGDRWADMAERYGADVDVVEKPW-GEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNP---LEGIGALAKKHDALLI 158 (356)
T ss_pred CchhHHHHHHHHHhCCCeEEeecCC-CCCCCHHHHHHHHhccCCCEEEEeccCCCcccccC---HHHHHHHHHhcCCEEE
Confidence 8775 4677888999999999875 578999999999987 8999999999999999986 5558888999999999
Q ss_pred EcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHH---Hhh---------------
Q 013883 280 SDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQ---AHS--------------- 341 (434)
Q Consensus 280 ~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~---~~~--------------- 341 (434)
+|++|.. +.....+... +..+++.|.+|.++. +.++||++.++++++.+.. ...
T Consensus 159 ~D~~~~~---g~~~~~~~~~----~~d~~~~s~~K~l~~-p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (356)
T cd06451 159 VDAVSSL---GGEPFRMDEW----GVDVAYTGSQKALGA-PPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEG 230 (356)
T ss_pred Eeeehhc---cCcccccccc----CccEEEecCchhccC-CCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhccc
Confidence 9998763 2112222211 223667789999984 3468999999988877653 000
Q ss_pred -ccccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCC---eeEEEeeecCCCCCCCHHHHH
Q 013883 342 -FLTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSS---GTYFVVVDHTPFGHETDIAFC 416 (434)
Q Consensus 342 -~~~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 416 (434)
....+++...+.++.++++.. ...++...++.+++++.+.+.|++.|+.+..+. ++.+.|+.+.+ +. +..+++
T Consensus 231 ~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~ 308 (356)
T cd06451 231 YSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGLKLLAKPELRSPTVTAVLVPE-GV-DGDEVV 308 (356)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCCceEEEECCC-CC-CHHHHH
Confidence 112233444455555565542 234567788888999999999998898876432 34455665532 22 577898
Q ss_pred HHHHHhcCeEEECCCC
Q 013883 417 EYLIKEVGVVAIPTSV 432 (434)
Q Consensus 417 ~~Ll~~~GV~v~pG~~ 432 (434)
++|.+++||.+.||..
T Consensus 309 ~~L~~~~gI~~~~g~~ 324 (356)
T cd06451 309 RRLMKRYNIEIAGGLG 324 (356)
T ss_pred HHHHHhCCEEEecccc
Confidence 8887666999998753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-24 Score=212.56 Aligned_cols=290 Identities=15% Similarity=0.148 Sum_probs=213.6
Q ss_pred HHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchh
Q 013883 127 VKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDS 206 (434)
Q Consensus 127 v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~ 206 (434)
+.+.+.+++......|. ..+..++++.+.+.+.+.+|.+ .++.+++++++++++..++..++++||+|++.++.|++
T Consensus 20 ~~~~V~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~~~g~~--~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~ 96 (401)
T PLN02409 20 IPERVLRAMNRPNEDHR-SPAFPALTKELLEDVKYIFKTK--SGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFS 96 (401)
T ss_pred CCHHHHHHhcCCCCCCC-CHHHHHHHHHHHHHHHHHhCCC--CCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchh
Confidence 33344444444333332 2366788999999998888864 22268888899999999999999999999999998876
Q ss_pred H--HHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc----CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEE
Q 013883 207 Y--EATLSMAGAKIKCITLRPPDFAIPIEELKSTISK----NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFS 280 (434)
Q Consensus 207 ~--~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~----~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~ 280 (434)
. ...++..|++++.++.++ +..+|++.+++++++ ++++|++++++||||.+++.+++.++++ |+++|+++|+
T Consensus 97 ~~~~~~~~~~g~~v~~v~~~~-~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~~~g~~~vv 174 (401)
T PLN02409 97 LLWIDQMQRLNFDVDVVESPW-GQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLD-CAQHPALLLV 174 (401)
T ss_pred HHHHHHHHHcCCceEEEECCC-CCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHh-hhccCcEEEE
Confidence 5 467788999999999875 445899999999985 7899999999999999998777666655 9999999999
Q ss_pred cCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhh------------------c
Q 013883 281 DEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHS------------------F 342 (434)
Q Consensus 281 Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~------------------~ 342 (434)
|+++.... ....+. . .+..+++.|.+|.++.| .++||++.+++.++++..... .
T Consensus 175 D~v~s~g~---~~id~~---~-~~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 246 (401)
T PLN02409 175 DGVSSIGA---LDFRMD---E-WGVDVALTGSQKALSLP-TGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTY 246 (401)
T ss_pred EcccccCC---cccccc---c-cCccEEEEcCccccCcC-CCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCC
Confidence 99987421 111111 1 13347777789999633 469999999998877653211 1
Q ss_pred cccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCC----eeEEEeeecCCCCCCCHHHHHH
Q 013883 343 LTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSS----GTYFVVVDHTPFGHETDIAFCE 417 (434)
Q Consensus 343 ~~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 417 (434)
..++++...+.++..+|+.. +..+++++++++++++++++.|+++|+++..+. .+...++.++ .+. +..++..
T Consensus 247 ~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p-~~~-~~~~l~~ 324 (401)
T PLN02409 247 WPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVP-EGI-DSAEIVK 324 (401)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCC-CCC-CHHHHHH
Confidence 13456666777777777752 345778889999999999999998898877542 2233455543 233 4678888
Q ss_pred HHHHhcCeEEECCC
Q 013883 418 YLIKEVGVVAIPTS 431 (434)
Q Consensus 418 ~Ll~~~GV~v~pG~ 431 (434)
+|++++||.+.+|.
T Consensus 325 ~l~~~~~i~i~~G~ 338 (401)
T PLN02409 325 NAWKKYNLSLGLGL 338 (401)
T ss_pred HHHHhCCEEEEcCC
Confidence 89889999999885
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=210.65 Aligned_cols=298 Identities=17% Similarity=0.162 Sum_probs=209.6
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCC-CCCCCCC--------CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGK-NQYARGH--------GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~-~~Y~~~~--------G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~ 180 (434)
+.+.|..+.-. +.++.+.+++.+.+.+.. +...... -+.++|++++++++ . .+++ +|++|+|++
T Consensus 23 ~~iYld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~----~-~~~~-~v~~t~g~t 95 (406)
T PRK09295 23 PLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFIN----A-RSAE-ELVFVRGTT 95 (406)
T ss_pred ceEEEeCcccc-cCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcC----c-CCCC-eEEEeCCHH
Confidence 46777766443 345667788877775421 1111111 13466777777765 1 1455 899999999
Q ss_pred HHHHHHHHH----ccCCCCeEEEcCCCchh----HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCC
Q 013883 181 EAIAATILG----LINPGDEVILFAPFYDS----YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPH 252 (434)
Q Consensus 181 ~ai~~~~~~----l~~~gd~Vlv~~p~y~~----~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~ 252 (434)
+++..++.+ ++++||+|++.++.|++ +...++..|++++.++.++ ++.+|++.+++++++++++|++++|+
T Consensus 96 ~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~t~lv~l~~~~ 174 (406)
T PRK09295 96 EGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNP-DGTLQLETLPALFDERTRLLAITHVS 174 (406)
T ss_pred HHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC-CCCCCHHHHHHhcCCCcEEEEEecch
Confidence 999998876 46899999999987764 4556677899999999874 67799999999999999999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhh
Q 013883 253 NPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL 332 (434)
Q Consensus 253 NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~ 332 (434)
||||.+++ +++|+++|+++|+++|+|++|..... ...+.. .+..+++.|++|.+|.+| +||+++++++
T Consensus 175 n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~~---~~~~~~----~~~D~~~~s~~K~~gp~G--~G~l~~~~~~ 242 (406)
T PRK09295 175 NVLGTENP---LAEMIALAHQHGAKVLVDGAQAVMHH---PVDVQA----LDCDFYVFSGHKLYGPTG--IGILYVKEAL 242 (406)
T ss_pred hcccccCC---HHHHHHHHHHcCCEEEEEcccccCcc---ccCchh----cCCCEEEeehhhccCCCC--cEEEEEchHh
Confidence 99999996 56688899999999999999975321 112211 234588899999888666 8999999887
Q ss_pred HHHHHHH----------------------hhccccCCchHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHhhhC-C
Q 013883 333 TWGVRQA----------------------HSFLTFATSTPMQWAATAALRAPET-YYEELKRDYSAKKAILVEGLNAV-G 388 (434)
Q Consensus 333 ~~~l~~~----------------------~~~~~~~~~~~~q~a~~~~L~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g 388 (434)
++.+... .++...+++.....++..+|+...+ ..+..+++.++.++++.+.|.++ |
T Consensus 243 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~ 322 (406)
T PRK09295 243 LQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPD 322 (406)
T ss_pred HhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7654311 1112234556666666667664322 34666778888889999999876 6
Q ss_pred CEeecCC--eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 389 FKVFPSS--GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 389 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
+.+..+. .+++.| .++. .++.++...| +++||.+..|..
T Consensus 323 ~~~~~~~~~~~iv~~-~~~~---~~~~~~~~~L-~~~gI~v~~g~~ 363 (406)
T PRK09295 323 LTLYGPQNRLGVIAF-NLGK---HHAYDVGSFL-DNYGIAVRTGHH 363 (406)
T ss_pred EEEeCCCCCceEEEE-EECC---cCHHHHHHHH-HhCCeEEecccc
Confidence 7776543 454443 3321 2456776665 677999998864
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=211.89 Aligned_cols=303 Identities=16% Similarity=0.163 Sum_probs=208.5
Q ss_pred cCCeeEeCCCC----CCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 108 KHGAINLGQGF----PNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 108 ~~~~i~l~~g~----p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
+...+||..|. -++ .+|.+.+++.+++++... .. .....++++++++++.+..+ .+ .+++++++++++
T Consensus 28 G~~~lD~~s~~~~~~lG~-~~p~v~~a~~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~~----~~-~~~~~~sG~~a~ 99 (377)
T PRK02936 28 GKTYLDFTSGIAVCNLGH-CHPTVTKAVQEQLDDIWH-VS-NLFTNSLQEEVASLLAENSA----GD-LVFFCNSGAEAN 99 (377)
T ss_pred CCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhccc-cc-cccCCHHHHHHHHHHHhcCC----CC-EEEEeCCcHHHH
Confidence 33678987773 344 578888999998876322 22 22446889999999986543 24 699999999999
Q ss_pred HHHHHHcc-CCC-CeEEEcCCCchhHHH-HHHHcCCEEE---EEEcCCCC-C--CCCHHHHHhhcccCCcEEEecCCCCC
Q 013883 184 AATILGLI-NPG-DEVILFAPFYDSYEA-TLSMAGAKIK---CITLRPPD-F--AIPIEELKSTISKNTRAILMNTPHNP 254 (434)
Q Consensus 184 ~~~~~~l~-~~g-d~Vlv~~p~y~~~~~-~~~~~G~~~~---~v~~~~~~-~--~~d~~~l~~~i~~~~~~i~~~~p~NP 254 (434)
..+++... -+| ++|++.++.|++... .+...+.... ..|..++. + ..|++.+++.+.+++++|++..++++
T Consensus 100 ~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~ 179 (377)
T PRK02936 100 EAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNEEVAAVMLEVVQGE 179 (377)
T ss_pred HHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccCCeEEEEEecccCC
Confidence 99988542 234 679999998886432 2222232111 01111100 0 11789999999888999999888999
Q ss_pred cccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhH
Q 013883 255 TGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT 333 (434)
Q Consensus 255 TG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~ 333 (434)
+|.. .+++.+++|.++|++||+++|+||+|.+|.+.+.......+...++ +.+|||.++ +|+|+||+++++++.
T Consensus 180 ~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~d----i~t~sK~l~-~G~~ig~v~~~~~~~ 254 (377)
T PRK02936 180 GGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPD----IVTVAKGLG-NGIPVGAMIGKKELG 254 (377)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCc----EEEEccccc-CCCccEEEEEcHHHH
Confidence 9986 5788999999999999999999999998877664333222221223 347999999 999999999999998
Q ss_pred HHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh----CCC-EeecCCeeEEEeeecCCCC
Q 013883 334 WGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA----VGF-KVFPSSGTYFVVVDHTPFG 408 (434)
Q Consensus 334 ~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~-~~~~~~~~~~~~~~~~~~~ 408 (434)
+.+.......+++.+++.|.++.++|+... .++..++++++.+.+++.|++ .+. ..+.+ .|+++|+.+.+
T Consensus 255 ~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i~~~~-- 329 (377)
T PRK02936 255 TAFGPGSHGSTFGGNPLAMAAAKEVLQVIK--QPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRG-KGLMIGIECTE-- 329 (377)
T ss_pred hhccCCCCCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEee-cceEEEEEecc--
Confidence 887655555677889999999999997631 123345556666666666654 222 22223 45788888743
Q ss_pred CCCHHHHHHHHHHhcCeEEECCC
Q 013883 409 HETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 409 ~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+...+.+.|. ++||.+.|+.
T Consensus 330 --~~~~~~~~l~-~~gv~v~~~g 349 (377)
T PRK02936 330 --EVAPVIEQLR-EEGLLVLSAG 349 (377)
T ss_pred --hHHHHHHHHH-HCCeEEecCC
Confidence 2556666664 5699999864
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=215.84 Aligned_cols=221 Identities=17% Similarity=0.196 Sum_probs=175.7
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHH----HHcC
Q 013883 140 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATL----SMAG 215 (434)
Q Consensus 140 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G 215 (434)
.+|+.+. ...|++.++++.+ .+ ++++++|+++++..++.+++++||.|+++.|.|+.+...+ ..+|
T Consensus 78 ~R~~~Pt-~~~Le~~lA~leg--------~~-~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~G 147 (427)
T PRK07049 78 SRFNHPN-SEIVEDRLAVYEG--------AE-SAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFG 147 (427)
T ss_pred cCCCCcC-HHHHHHHHHHHhC--------CC-cEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcC
Confidence 4455543 4789999999875 44 5788888889999999999999999999999999997664 5679
Q ss_pred CEEEEEEcCCCCCCCCHHHHHhhcc-----cCCcEEEecCCCCCcccCCCHHHHHHHHHHHHH---cCcEEEEcCcCCcc
Q 013883 216 AKIKCITLRPPDFAIPIEELKSTIS-----KNTRAILMNTPHNPTGKMFTREELNVIASLCIE---NDVLVFSDEVYDKL 287 (434)
Q Consensus 216 ~~~~~v~~~~~~~~~d~~~l~~~i~-----~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~---~~~~iI~Deay~~~ 287 (434)
++++.++.. .|++.+++++. +++++|++++|+||||.+++.+++.+|++.|++ +++++|+||+|...
T Consensus 148 i~~v~~~~~-----~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~ 222 (427)
T PRK07049 148 VGAVGFADG-----LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGP 222 (427)
T ss_pred cEEEEEeCC-----CCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcccc
Confidence 987777622 36677776663 478999999999999999999998888887654 68999999998764
Q ss_pred ccCCCCccccCCCCCCCceEEEccCChhhc-cccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHH
Q 013883 288 AFEMDHISIASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYY 366 (434)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~ 366 (434)
.+. .++ ..+..+++.|+||.+| .+|+|+||+++++++++.++..+.....+.+++.++++...|+. +
T Consensus 223 ~~~---~pl-----~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~t----l 290 (427)
T PRK07049 223 VFQ---KPL-----EHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQLDPHSCWMLGRSLET----L 290 (427)
T ss_pred ccC---Ccc-----ccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCh----H
Confidence 321 111 1245688999999998 69999999999999999998887766777888888888777763 4
Q ss_pred HHHHHHHHHHHHHHHHHhhhC
Q 013883 367 EELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~ 387 (434)
....++..++++.+.+.|++.
T Consensus 291 ~~R~~~~~~~a~~la~~L~~~ 311 (427)
T PRK07049 291 VLRMERANRNARAVAEFLRDH 311 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 445566688899999999875
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=216.19 Aligned_cols=217 Identities=18% Similarity=0.238 Sum_probs=174.2
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHH-----HHcCCEEEEEE
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATL-----SMAGAKIKCIT 222 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~-----~~~G~~~~~v~ 222 (434)
..+|++.++++++ .+ .+++++|+++|+..++.+++++||+|+++.|.|+.+...+ +..|++++.++
T Consensus 78 ~~~LE~~lA~l~g--------~~-~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d 148 (418)
T PLN02242 78 VLNLGRQMAALEG--------TE-AAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVD 148 (418)
T ss_pred HHHHHHHHHHHhC--------CC-eEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcC
Confidence 4678888888775 34 6778999999999999999999999999999999887665 34787777665
Q ss_pred cCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCC
Q 013883 223 LRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPG 301 (434)
Q Consensus 223 ~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~ 301 (434)
.. |++.+++++++ ++++|++++|+||||.+. ++++|+++|++||++||+|++|..+.+.. ..+
T Consensus 149 ~~------d~e~l~~~i~~~~tklV~lesp~NPtG~v~---dl~~I~~la~~~gi~livDea~~~~~~~~-----~~~-- 212 (418)
T PLN02242 149 IT------DLEAVKKAVVPGKTKVLYFESISNPTLTVA---DIPELARIAHEKGVTVVVDNTFAPMVLSP-----ARL-- 212 (418)
T ss_pred CC------CHHHHHHhcCcCCCEEEEEecCCCCCCccc---CHHHHHHHHHHhCCEEEEECCCCccCCCH-----HHc--
Confidence 43 79999999988 599999999999999988 57889999999999999999998765421 111
Q ss_pred CCCceEEEccCChhhccccce-eeeEEeChhhHHHHHHHhhc--cccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 013883 302 MYERTVTMNSLGKTFSLTGWK-IGWAIAPPHLTWGVRQAHSF--LTFATSTPMQWAATAALRAPETYYEELKRDYSAKKA 378 (434)
Q Consensus 302 ~~~~~i~i~S~SK~~g~~G~R-~G~~~~~~~~~~~l~~~~~~--~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~ 378 (434)
+..+++.||||.++.+|++ .||+++++++++.++..+.. ...+.+...|.++..++... .+..+.+++.++++
T Consensus 213 --g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~--tl~~r~~~~~~~a~ 288 (418)
T PLN02242 213 --GADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSERLP--HLSLRMKEHCRRAM 288 (418)
T ss_pred --CCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCC--cHHHHHHHHHHHHH
Confidence 3468899999999888987 59999999999888776542 34555666677776666533 45566778999999
Q ss_pred HHHHHhhhCCCEeec
Q 013883 379 ILVEGLNAVGFKVFP 393 (434)
Q Consensus 379 ~l~~~L~~~g~~~~~ 393 (434)
.+.+.|++.++++..
T Consensus 289 ~la~~L~~~~~~V~y 303 (418)
T PLN02242 289 EYAKRMKELGLKVIY 303 (418)
T ss_pred HHHHHHHhCCCEEEC
Confidence 999999998877763
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=211.41 Aligned_cols=298 Identities=19% Similarity=0.201 Sum_probs=208.7
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCC------CCCC---CCcHHHHHHHHHHHHhhcCCCCC-CCCcEEEcCCh
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQ------YARG---HGVPEFNSAIASRFKKDSGLEVD-PEKEVTVTSGC 179 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~------Y~~~---~G~~~lr~~ia~~l~~~~g~~~~-~~~~i~~t~G~ 179 (434)
+.+.|..+..+ +.++.+.+++.+.+.+.... |... ..+.++|+.++++++ .+ ++ +|++|+|+
T Consensus 32 ~~iyLd~a~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~-~v~~t~g~ 103 (424)
T PLN02855 32 KLVYLDNAATS-QKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFIN------ASTSR-EIVFTRNA 103 (424)
T ss_pred CeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcC------CCCCC-EEEEeCCH
Confidence 46888887665 45677888887776542111 1110 113477788888776 32 45 89999999
Q ss_pred HHHHHHHHHH----ccCCCCeEEEcCCCchh----HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCC
Q 013883 180 TEAIAATILG----LINPGDEVILFAPFYDS----YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTP 251 (434)
Q Consensus 180 ~~ai~~~~~~----l~~~gd~Vlv~~p~y~~----~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p 251 (434)
++++..++.. .+++||+|++.++.|++ +...++..|++++.++.+. ++.+|++.+++++++++++|++++|
T Consensus 104 t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~-~~~~~~~~l~~~i~~~t~lv~i~~~ 182 (424)
T PLN02855 104 TEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTP-DEVLDVEQLKELLSEKTKLVATHHV 182 (424)
T ss_pred HHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCC-CCCcCHHHHHHHhccCceEEEEeCc
Confidence 9999999876 36899999999997765 4455677899999999875 4568999999999989999999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh
Q 013883 252 HNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH 331 (434)
Q Consensus 252 ~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~ 331 (434)
+||||.+++. ++|+++|+++|+++|+|++|.... .... +.. .+..+++.|++|.+|.+| +||++++++
T Consensus 183 ~n~tG~~~~~---~~I~~l~~~~g~~vivD~a~~~g~---~~~~---~~~-~~~d~~~~s~~K~~gp~G--~G~l~~~~~ 250 (424)
T PLN02855 183 SNVLGSILPV---EDIVHWAHAVGAKVLVDACQSVPH---MPVD---VQT-LGADFLVASSHKMCGPTG--IGFLWGKSD 250 (424)
T ss_pred cccccccCCH---HHHHHHHHHcCCEEEEEhhhhcCC---cCCC---chh-cCCCEEEeecccccCCCc--cEEEEEchh
Confidence 9999999974 568889999999999999996321 1111 211 223477999999877555 899999988
Q ss_pred hHHHHHHH---------------------hhccccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhC-C
Q 013883 332 LTWGVRQA---------------------HSFLTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAV-G 388 (434)
Q Consensus 332 ~~~~l~~~---------------------~~~~~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g 388 (434)
+++.+... .++...+++.....++..+|+.. +...++.+++.++.++.+++.|+++ |
T Consensus 251 ~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g 330 (424)
T PLN02855 251 LLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPG 330 (424)
T ss_pred hhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 87665322 11112233444455555555532 2245677788888889999998876 7
Q ss_pred CEeecCC-------eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 389 FKVFPSS-------GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 389 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
++++.+. ++++ .+.++ +. +..++.+.|.+++||.+..|..
T Consensus 331 ~~i~~~~~~~~~~r~~~v-~~~~~--~~-~~~~v~~~L~~~~gI~v~~g~~ 377 (424)
T PLN02855 331 VRIYGPKPSEGVGRAALC-AFNVE--GI-HPTDLSTFLDQQHGVAIRSGHH 377 (424)
T ss_pred EEEeCCCcccccCcccEE-EEEEC--Cc-CHHHHHHHhcccCCEEEechhh
Confidence 8877432 3443 34442 22 4667888776656999998863
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=208.07 Aligned_cols=296 Identities=16% Similarity=0.130 Sum_probs=206.4
Q ss_pred CeeEeCCC-CCCCCCcHHHHHHHHHHHHcCCCC---CCCCCC----cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 110 GAINLGQG-FPNFDGPDFVKDAAIQAIRDGKNQ---YARGHG----VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 110 ~~i~l~~g-~p~~~~~~~v~~~~~~~~~~~~~~---Y~~~~G----~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
..++|+.+ |.++..+|.+.+++.++++..... +....| ..+|++.++++++ . ++.+++++| ++
T Consensus 46 ~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g----~----~~~~~~~SG-~~ 116 (406)
T PRK13393 46 EVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHG----K----EAALLFTSG-YV 116 (406)
T ss_pred cEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhC----C----CcEEEeCCc-HH
Confidence 57888775 999999999999999998763221 111123 2445555555553 2 324555655 57
Q ss_pred HHHHHHHHccC--CCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc----cCCcEEEecCCCCCc
Q 013883 182 AIAATILGLIN--PGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS----KNTRAILMNTPHNPT 255 (434)
Q Consensus 182 ai~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~----~~~~~i~~~~p~NPT 255 (434)
++..++..+.. +||.|+.....|......+...|.+++.++.. |++.+++.++ +++++|++++++|++
T Consensus 117 An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~~~~v~~~~v~~~~ 190 (406)
T PRK13393 117 SNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRHN------DPADLERKLSDLDPHRPKLVAFESVYSMD 190 (406)
T ss_pred HHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCCC------CHHHHHHHHHhccCCCCEEEEEcCCCCCC
Confidence 88888887655 78877777778887788888888888777643 5666666554 256888999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCC-CCceEEEccCChhhccccceeeeEEeChhhHH
Q 013883 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM-YERTVTMNSLGKTFSLTGWKIGWAIAPPHLTW 334 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~-~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~ 334 (434)
|.+.+ +++|.++|++||+++|+||+|....++.....+....+. .+.+++++||||.+|++| ||+++++++++
T Consensus 191 G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G---G~~~~~~~~~~ 264 (406)
T PRK13393 191 GDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMG---GYITGSAALCD 264 (406)
T ss_pred CchhC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccC---ceeeCCHHHHH
Confidence 99986 677888999999999999999844444322222121111 223577899999999888 99999999988
Q ss_pred HHHHHhhcc--ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCH
Q 013883 335 GVRQAHSFL--TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETD 412 (434)
Q Consensus 335 ~l~~~~~~~--~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (434)
.++...... +.+.++..+.++.++|+..++.. ..+.+++++++++++.|++.|+++.++.++++.+ .+.. ..+.
T Consensus 265 ~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~-~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~i~~v-~~~~--~~~~ 340 (406)
T PRK13393 265 FIRSFASGFIFTTSLPPAVAAGALASVRHLKASS-AERERHQDRVARLRARLDKAGIPHLPNPSHIVPV-MVGD--PVLC 340 (406)
T ss_pred HHHHhCcCceecCccCHHHHHHHHHHHHHHhhCH-HHHHHHHHHHHHHHHHHHHcCCCcCCCCCCeEEE-EeCC--HHHH
Confidence 887655432 33455666777878887533222 2346678889999999998898877777776543 2211 0134
Q ss_pred HHHHHHHHHhcCeEEECC
Q 013883 413 IAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 413 ~~~~~~Ll~~~GV~v~pG 430 (434)
.+++++|++++||.+.++
T Consensus 341 ~~l~~~L~~~~Gi~v~~~ 358 (406)
T PRK13393 341 KQISDELLDRYGIYVQPI 358 (406)
T ss_pred HHHHHHHHHhCCEEEEeE
Confidence 678888887679999874
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=206.26 Aligned_cols=293 Identities=16% Similarity=0.121 Sum_probs=202.0
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCC
Q 013883 124 PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPF 203 (434)
Q Consensus 124 ~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~ 203 (434)
|-.+.+.+.+++......+.+ ...++.+.+.+.+.+..|.+-+.+ +|++++|+++++..++.++..+||.+++..+.
T Consensus 11 p~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~r~~la~l~~~~~~~~-~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~ 87 (363)
T TIGR02326 11 PLTTSRTVKEAMLFDWCTWDS--DYNIVVEQIRQQLLALATAEEGYT-SVLLQGSGTFAVEAVIGSAVPKDGKLLVVING 87 (363)
T ss_pred CCCCCHHHHHHhCCCCCCCCh--HHHHHHHHHHHHHHHHhCCCCCce-EEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 334445555555443322222 223333333444444444422223 69999999999999999999999988887776
Q ss_pred chhH--HHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc--CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEE
Q 013883 204 YDSY--EATLSMAGAKIKCITLRPPDFAIPIEELKSTISK--NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVF 279 (434)
Q Consensus 204 y~~~--~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~--~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI 279 (434)
+++. ...++..|++++.++.++ ++.+|++.++++++. +++++.+++++||||+.++ +++|.++|++||+++|
T Consensus 88 ~~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~g~~li 163 (363)
T TIGR02326 88 AYGARIVQIAEYLGIPHHVVDTGE-VEPPDVVEVEAILAADPAITHIALVHCETTTGILNP---IEAVAKLAHRHGKVTI 163 (363)
T ss_pred hhhHHHHHHHHHcCCceEEEeCCC-CCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCc---HHHHHHHHHHcCCEEE
Confidence 6555 466788999999999874 678899999999875 4577888899999999996 5679999999999999
Q ss_pred EcCcCCccccCCCCccccCCCCCCCceEEEccCChhh-ccccceeeeEEeChhhHHHHHHH------------------h
Q 013883 280 SDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTF-SLTGWKIGWAIAPPHLTWGVRQA------------------H 340 (434)
Q Consensus 280 ~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-g~~G~R~G~~~~~~~~~~~l~~~------------------~ 340 (434)
+|+++.. +.....+..+ +..+++.|++|.+ |.+| +||++++++.++++... .
T Consensus 164 vD~~~~~---g~~~~~~~~~----~~D~~~~s~~K~l~~p~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (363)
T TIGR02326 164 VDAMSSF---GGIPIDIAEL----HIDYLISSANKCIQGVPG--FGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNH 234 (363)
T ss_pred EEccccc---cCcccchhhc----CccEEEecCccccccCCc--ceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccC
Confidence 9987753 2223333322 2347889999988 4445 89999998877654311 0
Q ss_pred hccccCCchHHHHHHHHHHhCC-hH-HHHHHHHHHHHHHHHHHHHhhhCCCEeecC---CeeEEEeeecCCCCCCCHHHH
Q 013883 341 SFLTFATSTPMQWAATAALRAP-ET-YYEELKRDYSAKKAILVEGLNAVGFKVFPS---SGTYFVVVDHTPFGHETDIAF 415 (434)
Q Consensus 341 ~~~~~~~~~~~q~a~~~~L~~~-~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 415 (434)
....++.+.+.+.++..+|+.. ++ .+++..++++++++++++.|+++|+.+..+ ..+...++.+++....+..++
T Consensus 235 ~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 314 (363)
T TIGR02326 235 GKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALGFEPLLDDEIQSPIITSFYSPEDPDYRFADF 314 (363)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCceEEEEECCCCCCCCHHHH
Confidence 1123567777777777777653 22 366778999999999999999999887643 344455565543211145677
Q ss_pred HHHHHHhcCeEEECCCCC
Q 013883 416 CEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 416 ~~~Ll~~~GV~v~pG~~F 433 (434)
.+.|.+ +||.+.||..|
T Consensus 315 ~~~L~~-~gi~v~~g~~~ 331 (363)
T TIGR02326 315 YQRLKE-QGFVIYPGKVS 331 (363)
T ss_pred HHHHHH-CCEEEECCcCC
Confidence 777754 59999999654
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-24 Score=213.91 Aligned_cols=298 Identities=20% Similarity=0.196 Sum_probs=203.2
Q ss_pred cCCeeEeCCCCCCCC---CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFPNFD---GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~---~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...+||..|.-... .+|.+.+++.++++...... ... ..+....+++.+....+ .+ .+++++++++|+.
T Consensus 39 G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~-~~~-~~~~~~~l~~~l~~~~~----~~-~~~~~~SGseA~e 111 (396)
T PRK04073 39 GNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTS-RAF-HSDQLGPWYEKVAKLTG----KD-MVLPMNTGAEAVE 111 (396)
T ss_pred CCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccccc-ccc-CCHHHHHHHHHHHhcCC----CC-eEEEcCChHHHHH
Confidence 345788876633222 46888889988887632211 111 12333445555544332 24 7899999999999
Q ss_pred HHHHHccC---------CC-CeEEEcCCCchhHHH-HHHHcCCE------------EEEEEcCCCCCCCCHHHHHhhccc
Q 013883 185 ATILGLIN---------PG-DEVILFAPFYDSYEA-TLSMAGAK------------IKCITLRPPDFAIPIEELKSTISK 241 (434)
Q Consensus 185 ~~~~~l~~---------~g-d~Vlv~~p~y~~~~~-~~~~~G~~------------~~~v~~~~~~~~~d~~~l~~~i~~ 241 (434)
.+++.... +| ++|+..+-.|++... .+...+.. +..+++ .|++.+++++++
T Consensus 112 ~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~i~~ 185 (396)
T PRK04073 112 TAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY------GDLEALKAAITP 185 (396)
T ss_pred HHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC------CCHHHHHHhccc
Confidence 98886631 34 678888877776543 33333321 112222 278999999988
Q ss_pred CCcEEEecCCCCCcccCCCHH-HHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccc
Q 013883 242 NTRAILMNTPHNPTGKMFTRE-ELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTG 320 (434)
Q Consensus 242 ~~~~i~~~~p~NPTG~~~~~e-~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G 320 (434)
++++|+++.++||||.+++.+ .+++|.++|++||+++|+||+|.+|.+.+...........++ +.+|||.+|.+|
T Consensus 186 ~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pd----i~~~sK~lg~gg 261 (396)
T PRK04073 186 NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPD----MYILGKALGGGV 261 (396)
T ss_pred CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCC----EEEecccccCCC
Confidence 899999999999999988754 699999999999999999999998866554322211111122 446899999888
Q ss_pred ceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC---CEeecCCee
Q 013883 321 WKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG---FKVFPSSGT 397 (434)
Q Consensus 321 ~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---~~~~~~~~~ 397 (434)
+|+||+++++++++.+.......+++.+++.+.++.++|+..++ +.+.++.+++++++.+.|++++ +...++.|.
T Consensus 262 ~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~--~~l~~~~~~~~~~l~~~L~~l~~~~i~~~~~~g~ 339 (396)
T PRK04073 262 FPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEE--EKLPERSLELGEYFKEQLKEIDNPMIKEVRGRGL 339 (396)
T ss_pred CcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHhhcCCcccceecceE
Confidence 99999999999988876555556788899999999999974221 2344666777888888888764 333445555
Q ss_pred EEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 398 YFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
|+++++.. ++.+++++|++ +||.+.|.
T Consensus 340 -~~~~~~~~----~~~~~~~~l~~-~Gv~~~~~ 366 (396)
T PRK04073 340 -FIGVELNE----PARPYCEALKE-EGLLCKET 366 (396)
T ss_pred -EEEEEecc----hHHHHHHHHHH-CCeEEecC
Confidence 46666532 46788888876 59999874
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-24 Score=210.39 Aligned_cols=240 Identities=18% Similarity=0.259 Sum_probs=175.3
Q ss_pred CCCCCCcHHHHHHHHHH-----HHcCCCCCC--CCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc
Q 013883 118 FPNFDGPDFVKDAAIQA-----IRDGKNQYA--RGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL 190 (434)
Q Consensus 118 ~p~~~~~~~v~~~~~~~-----~~~~~~~Y~--~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l 190 (434)
.|.++.+..+.+...+. .+.....|. +..+..+|+++++++++ .+ ++++++|+++++..++.++
T Consensus 29 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~Le~~iA~~~g--------~~-~~l~~~sG~~Ai~~al~~l 99 (400)
T PRK06234 29 TPIYQTSTFIFDSAEQGGRRFAGEESGYIYSRLGNPTSTEVENKLALLEG--------GE-AAVVAASGMGAISSSLWSA 99 (400)
T ss_pred CCcccccceecCChHHHHHhhccCcCCCcccCCCCccHHHHHHHHHHHhC--------CC-cEEEEcCHHHHHHHHHHHH
Confidence 45666666555554432 112223365 55578899999999986 23 5778888889999999999
Q ss_pred cCCCCeEEEcCCCchhHHH----HHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 191 INPGDEVILFAPFYDSYEA----TLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 191 ~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
+++||+|+++.|.|..+.. .+...|++++.++.. |++++++++++++++|++++|+||||.+.+ +++
T Consensus 100 l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~------d~e~l~~~i~~~tklI~iesP~NPtG~v~d---l~~ 170 (400)
T PRK06234 100 LKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTS------NLEEVRNALKANTKVVYLETPANPTLKVTD---IKA 170 (400)
T ss_pred hCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCC------CHHHHHHHhccCCeEEEEECCCCCCCCcCC---HHH
Confidence 9999999999998876544 356789999888654 789999999999999999999999999985 677
Q ss_pred HHHHHHHc--CcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccccee-eeEEeChhhHHHHHHH--hh
Q 013883 267 IASLCIEN--DVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKI-GWAIAPPHLTWGVRQA--HS 341 (434)
Q Consensus 267 i~~la~~~--~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~-G~~~~~~~~~~~l~~~--~~ 341 (434)
|+++|+++ |+++|+|++|....+. . .+ ..+..+++.|++|.++.+|+|+ ||+++++++++.++.. +.
T Consensus 171 I~~la~~~~~~i~livDea~~~~~~~-~--~l-----~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~ 242 (400)
T PRK06234 171 ISNIAHENNKECLVFVDNTFCTPYIQ-R--PL-----QLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKD 242 (400)
T ss_pred HHHHHHhcCCCCEEEEECCCCchhcC-C--ch-----hhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHH
Confidence 88889997 9999999999876442 1 11 1234589999999998789875 9999999988877643 22
Q ss_pred ccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC
Q 013883 342 FLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 342 ~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (434)
......++...+.+...|+. +....++..++...+.+.|++.
T Consensus 243 ~~g~~l~p~~a~l~~~~l~t----l~~r~~~~~~na~~~a~~L~~~ 284 (400)
T PRK06234 243 MTGSVIGPFEAFLIIRGMKT----LQIRMEKHCKNAMKVAKFLESH 284 (400)
T ss_pred hcCCCCCHHHHHHHHhccCc----HHHHHHHHHHHHHHHHHHHHcC
Confidence 23445555555555555554 3334445556666677777653
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-24 Score=214.60 Aligned_cols=307 Identities=19% Similarity=0.169 Sum_probs=211.2
Q ss_pred cCCeeEeCCCCCCC---CCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFPNF---DGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p~~---~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...+||..|.... -.+|.+.+++.+++.+....+.+..+..+|++++++++.. .+ ++++++|+++|+.
T Consensus 47 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~lae~l~~~~~~-------~~-~v~~~~sGseA~e 118 (423)
T TIGR00713 47 GNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGTSYGAPTEAEILLAKEIISRVPS-------VE-MVRFVNSGTEATM 118 (423)
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhCCc-------cc-EEEEeCCHHHHHH
Confidence 44679998886543 2578899999999887544333555778888888887642 24 7999999999999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHHH---cCCEEEEEEcCCC-------C-C---CCCHHHHHhhcc---cCCcE
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLSM---AGAKIKCITLRPP-------D-F---AIPIEELKSTIS---KNTRA 245 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~---~G~~~~~v~~~~~-------~-~---~~d~~~l~~~i~---~~~~~ 245 (434)
.+++... ..+++|+..+++|+++...+.. .|......+..+. + . ..|++.+++.+. +++++
T Consensus 119 ~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aa 198 (423)
T TIGR00713 119 SAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAG 198 (423)
T ss_pred HHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEE
Confidence 9887542 3458999999999997654433 1111111111100 0 0 127899999886 46778
Q ss_pred EEec-CCCCCcccCCC-HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccccee
Q 013883 246 ILMN-TPHNPTGKMFT-REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKI 323 (434)
Q Consensus 246 i~~~-~p~NPTG~~~~-~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~ 323 (434)
|++. .|+| +|.+++ .+.+++|.++|++||+++|+||+|.+|.++.. .....+...+| +.+|||.++ +|+|+
T Consensus 199 vi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~-~~~~~~~~~pD----i~t~sK~l~-~G~pi 271 (423)
T TIGR00713 199 VIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALG-GAQEYFGVEPD----LTTLGKIIG-GGLPV 271 (423)
T ss_pred EEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcc-hhHHHhCCCcc----hhhhhhhhc-CCCce
Confidence 8875 6788 798877 68899999999999999999999998854322 11111211233 458999999 99999
Q ss_pred eeEEeChhhHHHHHH---HhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEee-cCCee
Q 013883 324 GWAIAPPHLTWGVRQ---AHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKVF-PSSGT 397 (434)
Q Consensus 324 G~~~~~~~~~~~l~~---~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~ 397 (434)
||+++++++++.+.. .....+++.+++.+.++.++|+.. +++.+.+++....+++.+.+.+++.++... ...|.
T Consensus 272 g~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~ 351 (423)
T TIGR00713 272 GAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGS 351 (423)
T ss_pred eeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecc
Confidence 999999999888763 223357788999999988888742 236777788888888888888888776653 33455
Q ss_pred EEE-eeecCCCC------CCCH---HHHHHHHHHhcCeEEECC
Q 013883 398 YFV-VVDHTPFG------HETD---IAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 398 ~~~-~~~~~~~~------~~~~---~~~~~~Ll~~~GV~v~pG 430 (434)
++. ++...+.. ..+. ..+++.|++ +||.+.++
T Consensus 352 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~ 393 (423)
T TIGR00713 352 MFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLD-KGVFLPPS 393 (423)
T ss_pred EEEEEEecCCCCChhhhhcccHHHHHHHHHHHHH-CCeEEecC
Confidence 443 34321110 0011 257777776 59998765
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=205.26 Aligned_cols=225 Identities=18% Similarity=0.246 Sum_probs=172.6
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhH----HHHHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSY----EATLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~----~~~~~~~G~~~~~v~~ 223 (434)
..+|++.++++.+ .+ ..++++|+++++..++ .++++||+|++++|.|+.. ...+...|++++.++.
T Consensus 54 ~~~le~~la~l~g--------~~-~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 123 (366)
T PRK08247 54 RGVLEQAIADLEG--------GD-QGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNT 123 (366)
T ss_pred HHHHHHHHHHHhC--------CC-cEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECC
Confidence 4678888888876 23 3466777789998765 5789999999999999874 3445568999988865
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
. |++.+++++++++++|++++|+||+|. ..++++|+++|++||+++|+|++|...... . ++ ..
T Consensus 124 ~------d~~~l~~~i~~~tklv~le~P~NP~~~---~~dl~~I~~la~~~g~~lIvD~t~~~~~~~-~--p~-----~~ 186 (366)
T PRK08247 124 A------SLKAIEQAITPNTKAIFIETPTNPLMQ---ETDIAAIAKIAKKHGLLLIVDNTFYTPVLQ-R--PL-----EE 186 (366)
T ss_pred C------CHHHHHHhcccCceEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCcccccc-C--ch-----hc
Confidence 3 789999999999999999999999874 568999999999999999999999542221 1 11 12
Q ss_pred CceEEEccCChhhcc-ccceeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSL-TGWKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILV 381 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~-~G~R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~ 381 (434)
+..+++.|+||.++- .+.+.|+++++ +++.+.++..+.......+.+.++++...|+. +....++++++++.+.
T Consensus 187 g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~t----l~~r~~~~~~~a~~l~ 262 (366)
T PRK08247 187 GADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKT----LALRMRQHEENAKAIA 262 (366)
T ss_pred CCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCc----HHHHHHHHHHHHHHHH
Confidence 456999999999962 24589999997 67888887777666667777777777776663 3444556789999999
Q ss_pred HHhhhC-CCE-e-ecCCeeEEEeeec
Q 013883 382 EGLNAV-GFK-V-FPSSGTYFVVVDH 404 (434)
Q Consensus 382 ~~L~~~-g~~-~-~~~~~~~~~~~~~ 404 (434)
+.|++. ++. + .|+.|++|.| .+
T Consensus 263 ~~L~~~p~v~~v~~P~~gg~~sf-~~ 287 (366)
T PRK08247 263 AFLNEQPGVTDVLYPGRGGMLSF-RL 287 (366)
T ss_pred HHHHhCCCeeEEecCCcCcEEEE-EE
Confidence 999986 665 3 4558999988 44
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-23 Score=202.42 Aligned_cols=265 Identities=17% Similarity=0.151 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhH--HHHHHHcCCEEEEEEcCCC
Q 013883 149 PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSY--EATLSMAGAKIKCITLRPP 226 (434)
Q Consensus 149 ~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~G~~~~~v~~~~~ 226 (434)
.++|+.+++++ |.+-+.+ .|++++|+++++..++.++..+||.|++..+.|++. ...++..|++++.++.++
T Consensus 40 ~~~~~~l~~l~----~~~~~~~-~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~- 113 (368)
T PRK13479 40 ASVRAKLVAIA----TGEEGYT-CVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTGE- 113 (368)
T ss_pred HHHHHHHHHHh----CCCCCce-EEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHHHHHHHHHcCCcEEEEECCC-
Confidence 34555555554 4322223 688999999999999999999999999998888776 477888999999999874
Q ss_pred CCCCCHHHHHhhccc--CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCC
Q 013883 227 DFAIPIEELKSTISK--NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYE 304 (434)
Q Consensus 227 ~~~~d~~~l~~~i~~--~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~ 304 (434)
++.+|++.+++++++ ++++|++++|+||||...+ +++|.++|+++|+++|+|+++ .+ +.....+... +
T Consensus 114 ~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~~~~~livDa~~-~~--g~~~~~~~~~----~ 183 (368)
T PRK13479 114 DEPPDAAEVEAALAADPRITHVALVHCETTTGILNP---LDEIAAVAKRHGKRLIVDAMS-SF--GAIPIDIAEL----G 183 (368)
T ss_pred CCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccC---HHHHHHHHHHcCCEEEEEccc-cc--CCcccccccc----C
Confidence 567899999999865 4568889999999999986 567888999999999999554 33 2222222222 2
Q ss_pred ceEEEccCChhh-ccccceeeeEEeChhhHHHHHHHhh-----------------ccccCCchHHHHHHHHHHhCC--hH
Q 013883 305 RTVTMNSLGKTF-SLTGWKIGWAIAPPHLTWGVRQAHS-----------------FLTFATSTPMQWAATAALRAP--ET 364 (434)
Q Consensus 305 ~~i~i~S~SK~~-g~~G~R~G~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~~q~a~~~~L~~~--~~ 364 (434)
..+++.|++|.+ |.+| +||+++++++++.+..... ...++++.+.+.++..+++.. +.
T Consensus 184 ~d~~v~s~~K~l~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~ 261 (368)
T PRK13479 184 IDALISSANKCIEGVPG--FGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEG 261 (368)
T ss_pred ceEEEecCccccccCCC--ceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhh
Confidence 336778999976 6667 7999999988877654321 112466666666666666542 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCEeecCC---eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 365 YYEELKRDYSAKKAILVEGLNAVGFKVFPSS---GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
++++.++++.++++.+++.|+++|+.+..+. .+....+.+......+..++.++|.++ ||.+.+|..
T Consensus 262 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gi~v~~g~~ 331 (368)
T PRK13479 262 GVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQ-GFVIYPGKL 331 (368)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEECCCCCCcCHHHHHHHHHHC-CEEEecCCC
Confidence 4677788999999999999999998865332 111122222211111466888888655 999999854
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-23 Score=203.83 Aligned_cols=296 Identities=15% Similarity=0.114 Sum_probs=202.9
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcC-CC---CCC----CCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDG-KN---QYA----RGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-~~---~Y~----~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
..|||.-=...-+.++.+.+++.+..... .. .+. ....+.++|+.++++++ .+ ++++++|+++
T Consensus 19 ~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g--------~~-~~~~~~g~t~ 89 (387)
T PRK09331 19 EFINLDPIQRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLG--------MD-EARVTHGARE 89 (387)
T ss_pred cccccChhhcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhC--------CC-cEEEeCCHHH
Confidence 45676544444556777888888776331 11 111 11135678888888876 24 5788999999
Q ss_pred HHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcC-CCCCCCCHHHHHhhccc-------CCcEEEecCCCC
Q 013883 182 AIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLR-PPDFAIPIEELKSTISK-------NTRAILMNTPHN 253 (434)
Q Consensus 182 ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~~-------~~~~i~~~~p~N 253 (434)
++..++.+++++||+|+++.+.|......+...|++++.++.+ ++++.+|++.+++++++ ++++|++++|+|
T Consensus 90 a~~~al~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~ 169 (387)
T PRK09331 90 GKFAVMHSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDG 169 (387)
T ss_pred HHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCC
Confidence 9999999999999999999999998888889999999999984 23678999999998863 689999999999
Q ss_pred CcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhH
Q 013883 254 PTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT 333 (434)
Q Consensus 254 PTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~ 333 (434)
|||... ++++|+++|+++|+++|+|++|..... ...... .+..+++.|++|.++ .+.|+||++++++++
T Consensus 170 ~tG~~~---~l~~I~~la~~~g~~livD~a~~~g~~---~~~~~~----~g~D~~~~s~~K~l~-~~~~~G~l~~~~~~i 238 (387)
T PRK09331 170 NYGNLA---DAKKVAKVAHEYGIPFLLNGAYTVGRM---PVDGKK----LGADFIVGSGHKSMA-ASAPSGVLATTEEYA 238 (387)
T ss_pred CCcccc---cHHHHHHHHHHcCCEEEEECCcccCCc---CCCHHH----cCCCEEEeeCccccc-CCCCEEEEEECHHHH
Confidence 999876 477799999999999999999985321 111111 134588999999998 566899999999988
Q ss_pred HHHHHHhhcc--------ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeec---CCeeEEEe
Q 013883 334 WGVRQAHSFL--------TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFP---SSGTYFVV 401 (434)
Q Consensus 334 ~~l~~~~~~~--------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~---~~~~~~~~ 401 (434)
+.+....... ..+.......++...|+...+.++ ..++..++.+.+++.|+++ |+++.. ...+ ++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~-~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~-i~~ 316 (387)
T PRK09331 239 DKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVK-RWDEEVKKARWFVDELEKIEGFKQLGEKPRNHD-LMK 316 (387)
T ss_pred hhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCC-eEE
Confidence 8765432211 111222223333334433222232 3344566777889999998 998873 3333 333
Q ss_pred eecCCC------CCCCHHHHHHHHHHhcCeEEE
Q 013883 402 VDHTPF------GHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 402 ~~~~~~------~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
++.+.. ...+..++.++|. ++||...
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~L~-~~gI~~~ 348 (387)
T PRK09331 317 FETPSFDEIAKKHKRRGFFLYEELK-KRGIHGI 348 (387)
T ss_pred EeCCchhHHhhhccccchhHHHHHH-HcCceEE
Confidence 443211 1112356888885 4599954
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-23 Score=203.01 Aligned_cols=284 Identities=18% Similarity=0.162 Sum_probs=198.5
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCC----------CCcHHHHHHHHHHHHhhcCCCCC-CCCcEEEcCChHHHHHHHHHHcc
Q 013883 123 GPDFVKDAAIQAIRDGKNQYARG----------HGVPEFNSAIASRFKKDSGLEVD-PEKEVTVTSGCTEAIAATILGLI 191 (434)
Q Consensus 123 ~~~~v~~~~~~~~~~~~~~Y~~~----------~G~~~lr~~ia~~l~~~~g~~~~-~~~~i~~t~G~~~ai~~~~~~l~ 191 (434)
+++.+.+++.+.+.+. ..++.. ....++|+.++++++ .+ ++ ++++++|+++++.+++.++.
T Consensus 11 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~-~v~~~~g~t~a~~~~~~~l~ 82 (373)
T cd06453 11 KPQPVIDAIVDYYRHY-NANVHRGVHELSARATDAYEAAREKVARFIN------APSPD-EIIFTRNTTEAINLVAYGLG 82 (373)
T ss_pred CCHHHHHHHHHHHHhc-CCCCCCCccHHHHHHHHHHHHHHHHHHHHhC------CCCCC-eEEEeCCHHHHHHHHHHHhh
Confidence 3566777777776442 111100 123456777777665 33 45 89999999999999999998
Q ss_pred C---CCCeEEEcCCCchhH----HHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHH
Q 013883 192 N---PGDEVILFAPFYDSY----EATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL 264 (434)
Q Consensus 192 ~---~gd~Vlv~~p~y~~~----~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l 264 (434)
. +||+|+++++.|+.. ....+..|++++.++.+. ++.+|++.+++++.+++++|++++|+||||.+.+ +
T Consensus 83 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~---~ 158 (373)
T cd06453 83 RANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDD-DGQLDLEALEKLLTERTKLVAVTHVSNVLGTINP---V 158 (373)
T ss_pred hcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCC-CCCcCHHHHHHHhcCCceEEEEeCcccccCCcCC---H
Confidence 7 899999999999874 334557899999999874 6789999999999989999999999999999986 4
Q ss_pred HHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhc--
Q 013883 265 NVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSF-- 342 (434)
Q Consensus 265 ~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~-- 342 (434)
++|+++|++||+++|+|++|..... ...+... +..+++.|+.|.++. .++||+++++++++.++.....
T Consensus 159 ~~i~~~~~~~~~~li~D~a~~~~~~---~~~~~~~----~~d~~~~s~~K~~~~--~g~g~~~~~~~~~~~~~~~~~g~~ 229 (373)
T cd06453 159 KEIGEIAHEAGVPVLVDGAQSAGHM---PVDVQDL----GCDFLAFSGHKMLGP--TGIGVLYGKEELLEEMPPYGGGGE 229 (373)
T ss_pred HHHHHHHHHcCCEEEEEhhhhcCce---eeecccc----CCCEEEeccccccCC--CCcEEEEEchHHhhcCCCeecCCC
Confidence 5688889999999999999874321 1111111 234667788899984 5689999999888766543210
Q ss_pred -------------------cccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecC---CeeE
Q 013883 343 -------------------LTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAV-GFKVFPS---SGTY 398 (434)
Q Consensus 343 -------------------~~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~---~~~~ 398 (434)
...+++.....++..+++.. +..+++++++.+++++++.+.|+++ |+++..+ .+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 309 (373)
T cd06453 230 MIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGV 309 (373)
T ss_pred ccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCe
Confidence 01123333444444444432 1235677788888899999999887 6777632 3444
Q ss_pred EEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 399 FVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
+ ++.+.. .+..++.++|.+ +||.+.+|..
T Consensus 310 ~-~~~~~~---~~~~~i~~~l~~-~gi~i~~g~~ 338 (373)
T cd06453 310 V-SFNLEG---IHPHDVATILDQ-YGIAVRAGHH 338 (373)
T ss_pred E-EEEECC---cCHHHHHHHHHH-CCEEeccCcc
Confidence 3 444422 246678887754 6999988754
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-23 Score=203.25 Aligned_cols=298 Identities=13% Similarity=0.130 Sum_probs=202.1
Q ss_pred eEeCCC-CCCCCCcHHHHHHHHHHHHc-------CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 112 INLGQG-FPNFDGPDFVKDAAIQAIRD-------GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 112 i~l~~g-~p~~~~~~~v~~~~~~~~~~-------~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
+||+.. |.++..+|.+++++.+++++ .-..|+...+..+|+++++++++. ++ .+++++|.++..
T Consensus 1 ~~f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~-------e~-al~~~sG~~a~~ 72 (392)
T PLN03227 1 LNFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGT-------ES-AILYSDGASTTS 72 (392)
T ss_pred CCCcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCC-------Cc-EEEecCcHHHHH
Confidence 366654 88888999999999999876 122366666778899999998872 23 677888866555
Q ss_pred HHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc-----------cCCcEEEecCCC
Q 013883 184 AATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS-----------KNTRAILMNTPH 252 (434)
Q Consensus 184 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~-----------~~~~~i~~~~p~ 252 (434)
.++.+++++||.|+++++.|.++...+...+++++.++..+ . -|++.+.+.+. +++++|++.+++
T Consensus 73 -~~i~~l~~~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d--~-~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~ 148 (392)
T PLN03227 73 -STVAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHND--M-KDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLY 148 (392)
T ss_pred -HHHHHhCCCCCEEEEeccccHHHHHHHHHcCCeEEEeCCCC--H-HHHHHHHHHhhhhccccccccCCCcEEEEEcCCc
Confidence 67778999999999999999999988888888887776542 1 13344443442 257889999999
Q ss_pred CCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccC---CCCCCCceEEEccCChhhccccceeeeEEeC
Q 013883 253 NPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIAS---LPGMYERTVTMNSLGKTFSLTGWKIGWAIAP 329 (434)
Q Consensus 253 NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~---~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~ 329 (434)
||+|.+++ +++|.++|++||+++|+||+|....++........ +....+..+++.|+||.+| ++.|+++++
T Consensus 149 ~~~G~i~~---l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g---~~gg~v~~~ 222 (392)
T PLN03227 149 KNTGTLAP---LKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG---SVGGMTVGS 222 (392)
T ss_pred CCCCcccC---HHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh---ccCcEEecC
Confidence 99999997 66789999999999999999972222211111111 1112345788999999876 456999999
Q ss_pred hhhHHHHHHHhhccccCCc--hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeec----------CCee
Q 013883 330 PHLTWGVRQAHSFLTFATS--TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFP----------SSGT 397 (434)
Q Consensus 330 ~~~~~~l~~~~~~~~~~~~--~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~----------~~~~ 397 (434)
+++++.++......+++.+ +..+.++..++....+ .++++++++++.+++++.|++.+++.+. ...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~-~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~~ 301 (392)
T PLN03227 223 EEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELA-GPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPIS 301 (392)
T ss_pred HHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCC
Confidence 9988777655444455554 4456666666654221 2456778888999999999865443221 1123
Q ss_pred EEEeeecCCCCCC-------CHHHHHHHHHHhcCeEEEC
Q 013883 398 YFVVVDHTPFGHE-------TDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 398 ~~~~~~~~~~~~~-------~~~~~~~~Ll~~~GV~v~p 429 (434)
.++.+.+.+.... ...+++++++++ ||.+.+
T Consensus 302 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gi~~~~ 339 (392)
T PLN03227 302 PIIYLRLSDQEATRRTDETLILDQIAHHSLSE-GVAVVS 339 (392)
T ss_pred CEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHC-CCEEEe
Confidence 3444444221000 013677777665 999864
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-23 Score=205.12 Aligned_cols=300 Identities=18% Similarity=0.136 Sum_probs=197.0
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCC------CCCC-CCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGK------NQYA-RGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~------~~Y~-~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+.|+|..+... .++.+++++...+.... ..|. ...-...+.+...+.+.+.+|. +.. +|++++| +++
T Consensus 26 ~~~~l~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~-~i~~~sg-t~a 99 (416)
T PRK00011 26 EHIELIASENF--VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGA--EYA-NVQPHSG-SQA 99 (416)
T ss_pred cCeeeecccCc--CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCC--Cce-eeecCCc-hHH
Confidence 67888876432 57778887766543210 0111 1111222333223355555554 334 5766665 779
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHHH-----HHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcc
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYEA-----TLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTG 256 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~~-----~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG 256 (434)
+..++.+++++||+|+++.|+|..+.. .+...|++++.++++++++.+|++.+++++++ ++++|+++.++|+
T Consensus 100 l~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~~~-- 177 (416)
T PRK00011 100 NAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASAYS-- 177 (416)
T ss_pred HHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCCcCC--
Confidence 999999999999999999999976432 12345678888888755688999999999975 7899988766554
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcCcCCc-cccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC-hhhHH
Q 013883 257 KMFTREELNVIASLCIENDVLVFSDEVYDK-LAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTW 334 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~~~~iI~Deay~~-~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~ 334 (434)
... ++++|.++|+++|+++|+|++|.. +.+.+..... +. ...+++.|++|.+ +|+|.||++++ +++++
T Consensus 178 ~~~---~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~--~~---~~di~~~S~~K~l--~g~~gg~i~~~~~~~~~ 247 (416)
T PRK00011 178 RPI---DFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSP--VP---HADVVTTTTHKTL--RGPRGGLILTNDEELAK 247 (416)
T ss_pred Ccc---CHHHHHHHHHHcCCEEEEECcchhcccccCccCCC--CC---CCcEEEecCCcCC--CCCCceEEEeCCHHHHH
Confidence 333 477899999999999999999753 2222211111 11 2347799999976 68999999996 68888
Q ss_pred HHHHHhhccccCCchH-HHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecC-CeeEEEeeecCCCCCCC
Q 013883 335 GVRQAHSFLTFATSTP-MQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFPS-SGTYFVVVDHTPFGHET 411 (434)
Q Consensus 335 ~l~~~~~~~~~~~~~~-~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~~ 411 (434)
+++.......++.+.. .+.++..++.. .++++++.+++++++++.+++.|++.|+++.+. ..++++|+.+.+.+. +
T Consensus 248 ~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~~~~-~ 326 (416)
T PRK00011 248 KINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERGFRVVSGGTDNHLVLVDLRSKGL-T 326 (416)
T ss_pred HHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeeeecCCCCeEEEEeCcccCC-C
Confidence 8877665443333332 23332223322 234567888999999999999999999887641 223677887744332 3
Q ss_pred HHHHHHHHHHhcCeEEEC
Q 013883 412 DIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 412 ~~~~~~~Ll~~~GV~v~p 429 (434)
..++.+.| +++||.+..
T Consensus 327 ~~~~~~~L-~~~GI~v~~ 343 (416)
T PRK00011 327 GKEAEAAL-EEANITVNK 343 (416)
T ss_pred HHHHHHHH-HHcCcEEcc
Confidence 55666655 566999974
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-23 Score=202.80 Aligned_cols=276 Identities=16% Similarity=0.143 Sum_probs=202.2
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccC-----------
Q 013883 124 PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLIN----------- 192 (434)
Q Consensus 124 ~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~----------- 192 (434)
+..+.+.+...+......|....+..++++++++++.+..|.+.+++ ++++|+|+++++..++.++..
T Consensus 12 ~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~ 90 (345)
T cd06450 12 PALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDA-DGVFTSGGSESNLLALLAARDRARKRLKAGGG 90 (345)
T ss_pred HHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCC-CEEEeCChhHHHHHHHHHHHHHhhhhhhcccc
Confidence 34555555555554445688888899999999999999888764445 799999999999999888742
Q ss_pred -CC--CeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc------CCcEEEecCCCCCcccCCCHHH
Q 013883 193 -PG--DEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK------NTRAILMNTPHNPTGKMFTREE 263 (434)
Q Consensus 193 -~g--d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~i~~~~p~NPTG~~~~~e~ 263 (434)
++ +.|+++++.|..+...+...|.+++.++.++ ++.+|++.+++++++ +++++++++|+||||.+. +
T Consensus 91 ~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~---~ 166 (345)
T cd06450 91 RGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDE-DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAID---P 166 (345)
T ss_pred cccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCC-CCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCC---C
Confidence 33 4788899999999999888999999999875 468999999999987 788888999999999985 5
Q ss_pred HHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcc
Q 013883 264 LNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL 343 (434)
Q Consensus 264 l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~ 343 (434)
+++|+++|+++|+++++|++|..+.+........ .....+-..+..|++|.++ ++.++|+++.+
T Consensus 167 ~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~d~~~~s~~K~l~-~p~g~g~~~~~-------------- 230 (345)
T cd06450 167 LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHL-DFGIERVDSISVDPHKYGL-VPLGCSAVLVR-------------- 230 (345)
T ss_pred HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHH-hcCccccCEEEEchhHhhC-CCcchHHHHHH--------------
Confidence 7889999999999999999998876432111110 1111122356679999876 66788987654
Q ss_pred ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEee-cCCeeEEEeeecCCC---CCCCHHHHHHH
Q 013883 344 TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVF-PSSGTYFVVVDHTPF---GHETDIAFCEY 418 (434)
Q Consensus 344 ~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~ 418 (434)
...+.++...+. .+.+++.+++..++++++.+.|+++ ++.+. +++.+++.|. +.+. +. +..++.++
T Consensus 231 -----~~~~~~~l~~l~--~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~-~~~~~~~~~-~~~~i~~~ 301 (345)
T cd06450 231 -----ALKLWATLRRFG--RDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFR-LKPSVKLDE-LNYDLSDR 301 (345)
T ss_pred -----HHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEE-ECCcchhhH-HHHHHHHH
Confidence 444455555554 3456778888888999999999887 67665 3567766554 3221 11 34578888
Q ss_pred HHHhcCeEEECC
Q 013883 419 LIKEVGVVAIPT 430 (434)
Q Consensus 419 Ll~~~GV~v~pG 430 (434)
|.++ |+.+.++
T Consensus 302 L~~~-g~~~~~~ 312 (345)
T cd06450 302 LNER-GGWHVPA 312 (345)
T ss_pred HHhc-CCEEEEe
Confidence 8655 6655554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-23 Score=206.14 Aligned_cols=316 Identities=10% Similarity=0.063 Sum_probs=205.9
Q ss_pred CCeeEeCCCCCCCC---CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFPNFD---GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p~~~---~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...+||..|+...+ .++.+.+++.+++.+..+.+.+..+.++ ..++++.+....+.+.. + .+++++++++|++.
T Consensus 41 ~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~la~~l~~~~~~~~~-~-~~~f~~sGsea~e~ 117 (425)
T PRK08088 41 REYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEP-YLELCEKMNQKVPGDFA-K-KTLLVTTGSEAVEN 117 (425)
T ss_pred CEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCccccccCCHH-HHHHHHHHHHhCCCCCC-C-EEEEeCCcHHHHHH
Confidence 35788877754433 3788888999988764433333333343 44788888766554332 2 46666666787776
Q ss_pred HHHHcc--CCCCeEEEcCCCchhHHHHHHHcCCEEE--------------E--EEcCCCCCCC--CHHHHHhhcc-----
Q 013883 186 TILGLI--NPGDEVILFAPFYDSYEATLSMAGAKIK--------------C--ITLRPPDFAI--PIEELKSTIS----- 240 (434)
Q Consensus 186 ~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~~~~--------------~--v~~~~~~~~~--d~~~l~~~i~----- 240 (434)
+++... ..+..|+..+++|++....+...+.... . +|.+..+... +++.+++.+.
T Consensus 118 Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~ 197 (425)
T PRK08088 118 AVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAP 197 (425)
T ss_pred HHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCC
Confidence 665542 2234577779999998766655543211 1 1111111111 1556887775
Q ss_pred cCCcEEEecC-CCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccc
Q 013883 241 KNTRAILMNT-PHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLT 319 (434)
Q Consensus 241 ~~~~~i~~~~-p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 319 (434)
++..+|++.. .+|++...++.+.+++|.++|++||+++|+||+|.++.+.+....+... +.+..+.||||.++ +
T Consensus 198 ~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~----~~~pdi~s~sK~l~-~ 272 (425)
T PRK08088 198 EDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQM----GVAADLTTFAKSIA-G 272 (425)
T ss_pred CceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhc----CCCCCEEEEecccc-C
Confidence 2445555543 2777777889999999999999999999999999987665433222222 22344899999999 9
Q ss_pred cceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCee
Q 013883 320 GWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGT 397 (434)
Q Consensus 320 G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 397 (434)
|+|+||+++++++++.+.......+++.+++.|.++..+|+.. ++++++++...+++++.+.+.+.+.+........|
T Consensus 273 G~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~G 352 (425)
T PRK08088 273 GFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLG 352 (425)
T ss_pred CCcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccc
Confidence 9999999999999988876666678889999999999999863 34566666665666666665555554321122227
Q ss_pred EEEeeecCCCC------CCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 398 YFVVVDHTPFG------HETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 398 ~~~~~~~~~~~------~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+++|+.+.... .....++..++++ .||.+.|+..|
T Consensus 353 ~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~-~Gv~~~~~~~~ 393 (425)
T PRK08088 353 AMIAIELFEDGDHSKPNAKLTAQIVARARD-KGLILLSCGPY 393 (425)
T ss_pred eEEEEEEecCCCCCCCCHHHHHHHHHHHHh-CCCEEecCCCC
Confidence 77888873211 1124567777765 49999886543
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-23 Score=201.80 Aligned_cols=289 Identities=17% Similarity=0.152 Sum_probs=197.2
Q ss_pred CCcHHHHHHHHHHHHcCCC---CCCCCCC------cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc-
Q 013883 122 DGPDFVKDAAIQAIRDGKN---QYARGHG------VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI- 191 (434)
Q Consensus 122 ~~~~~v~~~~~~~~~~~~~---~Y~~~~G------~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~- 191 (434)
+.++.+.+++.+.+..... ......+ +.++|+.++++++ .+++ +|++++|+++++..++.++.
T Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~-~v~~~~g~t~a~~~~l~~l~~ 81 (353)
T TIGR03235 9 PIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALG------ADTE-EVIFTSGATESNNLAILGLAR 81 (353)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhC------CCCC-eEEEeCCHHHHHHHHHHHHHH
Confidence 4567788888777654211 1111111 2456666666654 5566 89999999999999888875
Q ss_pred ---CCC-CeEEEcCCCchhH---HHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHH
Q 013883 192 ---NPG-DEVILFAPFYDSY---EATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL 264 (434)
Q Consensus 192 ---~~g-d~Vlv~~p~y~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l 264 (434)
.+| +.|++....|+.+ ...++..|++++.++.++ ++.+|++.+++++++++++|++++++||||.+.+ +
T Consensus 82 ~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~---~ 157 (353)
T TIGR03235 82 AGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDE-SGRIDVDELADAIRPDTLLVSIMHVNNETGSIQP---I 157 (353)
T ss_pred hcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCC-CCcCCHHHHHHhCCCCCEEEEEEcccCCceeccC---H
Confidence 356 7788876666654 344566799999999874 6789999999999889999999999999999986 5
Q ss_pred HHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHH--HHH---
Q 013883 265 NVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGV--RQA--- 339 (434)
Q Consensus 265 ~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l--~~~--- 339 (434)
++|.++|+++|+++|+|+++..... ...+. ..+-.+++.|..|.+|.+| +|+++++++..... +..
T Consensus 158 ~~I~~l~~~~~~~~ivD~a~~~g~~---~~~~~----~~~~D~~~~s~~K~~gp~g--~g~l~~~~~~~~~~~~~~~~~~ 228 (353)
T TIGR03235 158 REIAEVLEAHEAFFHVDAAQVVGKI---TVDLS----ADRIDLISCSGHKIYGPKG--IGALVIRKRGKPKAPLKPIMFG 228 (353)
T ss_pred HHHHHHHHHcCCEEEEEchhhcCCc---ccccc----ccCCCEEEeehhhcCCCCc--eEEEEEccCcccccccCceeeC
Confidence 7799999999999999999775322 11111 1234477778899887556 89999988753221 110
Q ss_pred ----hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCC-eeEEEeeecCCCCCCCHHH
Q 013883 340 ----HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSS-GTYFVVVDHTPFGHETDIA 414 (434)
Q Consensus 340 ----~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~ 414 (434)
.+....+++.....++..+|+...+..++.+++++++++.+++.|++.|+++..+. .....++.+...+. +..+
T Consensus 229 ~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~~ 307 (353)
T TIGR03235 229 GGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILNFSIDGV-NSEA 307 (353)
T ss_pred CCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEEEEEeCCc-CHHH
Confidence 01123345555555566666543345677889999999999999988999886432 22111222211232 4566
Q ss_pred HHHHHHHhcCeEEECCCCC
Q 013883 415 FCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 415 ~~~~Ll~~~GV~v~pG~~F 433 (434)
+...| ++ ||.+.+|..|
T Consensus 308 v~~~L-~~-~i~v~~g~~~ 324 (353)
T TIGR03235 308 LIVNL-RA-DAAVSTGSAC 324 (353)
T ss_pred HHHHH-hC-CeEEEchhhc
Confidence 76666 55 9999999876
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-23 Score=205.55 Aligned_cols=297 Identities=18% Similarity=0.226 Sum_probs=201.9
Q ss_pred CCeeEeCCCCCCCCC---cHHHHHHHHHHHHcCCCCC--CCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 109 HGAINLGQGFPNFDG---PDFVKDAAIQAIRDGKNQY--ARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~---~~~v~~~~~~~~~~~~~~Y--~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
...+||..|+-.... +|.+.+++.+++....... .......+|.+.++++ .+ .+ .+++++++++|+
T Consensus 41 ~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~----~~-~~~~~~SGs~A~ 111 (401)
T PRK00854 41 NRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAAL----TG----SH-KVLPMNSGAEAV 111 (401)
T ss_pred CEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhh----CC----CC-EEEEeCCcHHHH
Confidence 357888777554443 7888999988887632211 1111223444444443 33 24 689999999999
Q ss_pred HHHHHHccC---------CC-CeEEEcCCCchhHHHHHHHcCC-------------EEEEEEcCCCCCCCCHHHHHhhcc
Q 013883 184 AATILGLIN---------PG-DEVILFAPFYDSYEATLSMAGA-------------KIKCITLRPPDFAIPIEELKSTIS 240 (434)
Q Consensus 184 ~~~~~~l~~---------~g-d~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~d~~~l~~~i~ 240 (434)
..++..+.. +| ++|++..-.|++....+...+. ++..++. .|++.+++++.
T Consensus 112 e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~le~~i~ 185 (401)
T PRK00854 112 ETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF------GDAEALEAAIT 185 (401)
T ss_pred HHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC------CCHHHHHHHhC
Confidence 999988742 23 6788888888775443333222 1222221 37899999998
Q ss_pred cCCcEEEecCCCCCcccCCCH-HHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccc
Q 013883 241 KNTRAILMNTPHNPTGKMFTR-EELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLT 319 (434)
Q Consensus 241 ~~~~~i~~~~p~NPTG~~~~~-e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 319 (434)
+++++|++++|+||+|.+++. +.+++|.++|++||+++|+||+|.++.+.+...........+|.+ .++|.++ .
T Consensus 186 ~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~----~~~K~l~-g 260 (401)
T PRK00854 186 PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVT----LIGKALS-G 260 (401)
T ss_pred CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEE----Eeccccc-C
Confidence 899999999999999998874 459999999999999999999999876654322111111122322 2479997 4
Q ss_pred c-ceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEe---ecCC
Q 013883 320 G-WKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKV---FPSS 395 (434)
Q Consensus 320 G-~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~---~~~~ 395 (434)
| +|+||+++++++++.+.......+++.+++.+.++.++|+..++ +.+.++++++.+++.+.|++++... ..+.
T Consensus 261 g~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~ 338 (401)
T PRK00854 261 GFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTE--EGMIENAAEMGAYFLEGLRSIRSNIVREVRGR 338 (401)
T ss_pred CccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHhhccCceEEEecc
Confidence 5 79999999999988776544555777888999999999875322 3356788888899999998875332 2445
Q ss_pred eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 396 GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
|.++.+. +.+.. .+..++++.|+++ ||.+.+.
T Consensus 339 g~~~~i~-~~~~~-~~~~~~~~~L~~~-GV~v~~~ 370 (401)
T PRK00854 339 GLMLAVE-LEPEA-GGARQYCEALKER-GLLAKDT 370 (401)
T ss_pred ceEEEEE-EecCc-hhHHHHHHHHHHC-CeEEecC
Confidence 6655543 22211 2467888888765 9999863
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=199.13 Aligned_cols=301 Identities=16% Similarity=0.162 Sum_probs=213.2
Q ss_pred CCeeEeCCC--CCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 109 HGAINLGQG--FPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 109 ~~~i~l~~g--~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
...|||..| +-.+...|.+.+++.+++.... .+.. .-..++++++++.+.. .++..+++++++++++..+
T Consensus 29 ~~~lD~~s~~~~~~lG~~p~v~~a~~~~~~~~~-~~~~-~~~~~~~~~la~~l~~------~~~~~~~~~~SGseA~~~A 100 (375)
T PRK04260 29 KKYLDFSSGIGVTNLGFHPQVQQALQKQAGLIW-HSPN-LYLNSLQEEVAQKLIG------DKDYLAFFCNSGAEANEAA 100 (375)
T ss_pred CEEEECCCCcccccCCCCHHHHHHHHHHHHhcC-cccC-ccCCHHHHHHHHHHhc------CcCCEEEEcCccHHHHHHH
Confidence 357898765 4455567789999998887532 2222 2345788889987752 1222468899999999988
Q ss_pred HHHcc--CCCCeEEEcCCCchhHH-HHHHHcCCEEE---------EEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCC
Q 013883 187 ILGLI--NPGDEVILFAPFYDSYE-ATLSMAGAKIK---------CITLRPPDFAIPIEELKSTISKNTRAILMNTPHNP 254 (434)
Q Consensus 187 ~~~l~--~~gd~Vlv~~p~y~~~~-~~~~~~G~~~~---------~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NP 254 (434)
++... .++++|++.+..|++.. ..+...|.+.. .++.. ...|++.+++.+.+++.+|++..++|+
T Consensus 101 l~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~dl~~l~~~l~~~~a~vi~e~v~~~ 177 (375)
T PRK04260 101 IKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYA---IFNDLNSVKALVNKNTAAVMLELVQGE 177 (375)
T ss_pred HHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEe---CCCCHHHHHHhcCCCeEEEEECCeECC
Confidence 87653 44678999889888643 33333332211 11111 113899999988777888899999999
Q ss_pred cccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhH
Q 013883 255 TGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT 333 (434)
Q Consensus 255 TG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~ 333 (434)
+|... +.+.+++|.++|+++|+++|+||+|.++...+...........+| +.||||.++ +|+|+||+++++++.
T Consensus 178 ~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pd----i~t~sK~l~-~G~~ig~~~~~~~~~ 252 (375)
T PRK04260 178 SGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPD----IFTLAKGLA-NGVPVGAMLAKSSLG 252 (375)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCC----EEEeccccc-CCcceEEEEEcHHHH
Confidence 99975 456799999999999999999999998766554332222222233 448999999 899999999999988
Q ss_pred HHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCC-CEeecCCeeEEEeeecCCCCCC
Q 013883 334 WGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVG-FKVFPSSGTYFVVVDHTPFGHE 410 (434)
Q Consensus 334 ~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~ 410 (434)
+.+.......+++.+++.+.++.++|+.. +++++++++..+..++.+.+.+.+.+ +..++ ..|+++|+.+..
T Consensus 253 ~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~---- 327 (375)
T PRK04260 253 GAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTTVR-GLGYMIGIETTA---- 327 (375)
T ss_pred hhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEe-ccceEEEEEecC----
Confidence 87765445567888899999999999653 35677778888888888888877664 33333 367788887632
Q ss_pred CHHHHHHHHHHhcCeEEECCC
Q 013883 411 TDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 411 ~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+..++.++|.+ +||.+.|+.
T Consensus 328 ~~~~~~~~l~~-~Gi~v~~~~ 347 (375)
T PRK04260 328 DLSQLVEAARD-KGLIVLTAG 347 (375)
T ss_pred cHHHHHHHHHh-CCCEEecCC
Confidence 46678888865 599998753
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=203.04 Aligned_cols=305 Identities=14% Similarity=0.113 Sum_probs=204.2
Q ss_pred CCeeEeCCC----CCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 109 HGAINLGQG----FPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 109 ~~~i~l~~g----~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
...+||..| +-++. +|.+.+++.+++.+..+ +.... ..+...++++.+.+..+ .+ .+++++++++|+.
T Consensus 39 ~~~lD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~-~~~~~-~~~~~~~la~~l~~~~~----~~-~v~~~~sGseA~e 110 (406)
T PRK12381 39 KEYIDFAGGIAVNALGHA-HPALREALNEQASKFWH-TGNGY-TNEPVLRLAKKLIDATF----AD-RVFFCNSGAEANE 110 (406)
T ss_pred CEEEEcCcCHhhccCCCC-CHHHHHHHHHHHhhccc-ccCcc-CCHHHHHHHHHHHhhCC----CC-eEEEcCCcHHHHH
Confidence 357888765 23344 78899999998875321 11111 12333445555554332 34 7999999999999
Q ss_pred HHHHHcc--------CCCCeEEEcCCCchhHHHHHHHcCCEEE-E---EEcCCC---CCCCCHHHHHhhcccCCcEEEec
Q 013883 185 ATILGLI--------NPGDEVILFAPFYDSYEATLSMAGAKIK-C---ITLRPP---DFAIPIEELKSTISKNTRAILMN 249 (434)
Q Consensus 185 ~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~G~~~~-~---v~~~~~---~~~~d~~~l~~~i~~~~~~i~~~ 249 (434)
.+++... ..+++|+..+..|++.......++.... . .++.+. -...|++.+++.+.+++++|++
T Consensus 111 ~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavii- 189 (406)
T PRK12381 111 AALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDDQTCAVIV- 189 (406)
T ss_pred HHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccCCeeEEEE-
Confidence 9988752 2346799999999987654433332211 0 011000 0123789999999877878877
Q ss_pred CCCCCcccCC--CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEE
Q 013883 250 TPHNPTGKMF--TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI 327 (434)
Q Consensus 250 ~p~NPTG~~~--~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~ 327 (434)
.|.|++|-+. +.+.+++|.++|++||+++|+||+|.++.+.|.......+...+| +.||||.+| +|+|+||++
T Consensus 190 EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pD----i~t~sK~l~-gG~~ig~~~ 264 (406)
T PRK12381 190 EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD----VLTTAKALG-GGFPIGAML 264 (406)
T ss_pred eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCC----EEEehhhhh-CCCceEEEE
Confidence 6999998654 789999999999999999999999998876665433222222233 469999999 899999999
Q ss_pred eChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC--CE--eecCCeeEEEeee
Q 013883 328 APPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG--FK--VFPSSGTYFVVVD 403 (434)
Q Consensus 328 ~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~--~~~~~~~~~~~~~ 403 (434)
+++++++.+.......+++.+++.+.++.++|+..+ .++++++++++.+++.+.|++++ .. ......|+++++.
T Consensus 265 ~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~ 342 (406)
T PRK12381 265 TTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELIN--TPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCV 342 (406)
T ss_pred EcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEE
Confidence 999998887654555677888999999988876422 23567888888888988888763 21 1223345666666
Q ss_pred cCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 404 HTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 404 ~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
+.+........+++.|++ +||.+.++
T Consensus 343 l~~~~~~~~~~~~~~l~~-~Gv~v~~~ 368 (406)
T PRK12381 343 LNAEYAGKAKQISQEAAK-AGVMVLIA 368 (406)
T ss_pred ecCchhhHHHHHHHHHHH-CCcEEeeC
Confidence 533111124566666654 59999863
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-22 Score=198.79 Aligned_cols=289 Identities=18% Similarity=0.152 Sum_probs=202.9
Q ss_pred CcHHHHHHHHHHHHcCC------CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc-----
Q 013883 123 GPDFVKDAAIQAIRDGK------NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI----- 191 (434)
Q Consensus 123 ~~~~v~~~~~~~~~~~~------~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~----- 191 (434)
.++.+.+++.+.+.+.. +.|+ ..+...+++++++++.. .+. .+++ +|++|+|+++++..++.++.
T Consensus 11 ~~~~v~~~~~~~~~~~~~n~~~~~~~~-~~~~~~l~~a~~~~~~~-~~~-~~~~-~i~~t~g~teal~~~~~~~~~~~~~ 86 (382)
T TIGR03403 11 LDPKVKELMDPFFCDIYGNPNSLHQFG-TATHPAIAEALDKLYKG-INA-RDLD-DIIITSCATESNNWVLKGVYFDEIL 86 (382)
T ss_pred CCHHHHHHHHHHHHhcCcCCccccHHH-HHHHHHHHHHHHHHHHH-cCc-CCCC-eEEEeCCHHHHHHHHHHHHHHhhcc
Confidence 45678888877776421 1122 12456788888887753 232 2466 89999999999999988762
Q ss_pred CC-CCeEEEcCCCchhHH---HHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 192 NP-GDEVILFAPFYDSYE---ATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 192 ~~-gd~Vlv~~p~y~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
++ +|+|++....|+.+. ..++..|++++.+|.++ ++.+|++.++++++++++++++++|+||||.+++. ++|
T Consensus 87 ~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~-~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~---~~I 162 (382)
T TIGR03403 87 KGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINE-QGTITAEQVREAITEKTALVSVMWANNETGMIFPI---KEI 162 (382)
T ss_pred cCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCC-CCCCCHHHHHHhcccCCeEEEEEcccCCCccccCH---HHH
Confidence 45 478998876665544 44567899999999874 57889999999999899999999999999999975 568
Q ss_pred HHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhH--HHH---HHHhhc
Q 013883 268 ASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT--WGV---RQAHSF 342 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~--~~l---~~~~~~ 342 (434)
.++|+++|+++|+|+++.... ....+. . .+-.+++.|++|.+|.+| +|+++.++... ..+ ......
T Consensus 163 ~~la~~~g~~~ivD~a~~~g~---~~~~~~---~-~~~D~~~~s~~K~~gp~G--~g~l~vr~~~~~~p~~~g~~~~~~~ 233 (382)
T TIGR03403 163 GEICKERGVLFHTDAVQAIGK---IPVDVQ---K-AGVDFLSFSAHKFHGPKG--VGGLYIRKGVELTPLFHGGEHMGGR 233 (382)
T ss_pred HHHHHHcCCEEEEechhhcCC---CccCcc---c-cCCCEEEEcchhhCCCCc--eEEEEECCCCCCCCcccCCCCCCCc
Confidence 888999999999999976421 111111 1 123378889999888777 68887764431 001 001112
Q ss_pred cccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCC----eeEEEeeecCCCCCCCHHHHHH
Q 013883 343 LTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSS----GTYFVVVDHTPFGHETDIAFCE 417 (434)
Q Consensus 343 ~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 417 (434)
...+++.+.+.++..+|+...++++..++++++.++.+.+.|+++ |+.+..+. .++ +.+.+. +. +..++..
T Consensus 234 ~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~--~~-~~~~~~~ 309 (382)
T TIGR03403 234 RSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNT-ILISIK--GV-EGEAMLW 309 (382)
T ss_pred ccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCE-EEEEeC--CC-CHHHHHH
Confidence 245677778878888887655567777889999999999999875 77777543 233 333332 22 4667777
Q ss_pred HHHHhcCeEEECCCCC
Q 013883 418 YLIKEVGVVAIPTSVF 433 (434)
Q Consensus 418 ~Ll~~~GV~v~pG~~F 433 (434)
+| +++||.+..|+.|
T Consensus 310 ~L-~~~gI~v~~g~~c 324 (382)
T TIGR03403 310 DL-NKAGIAASTGSAC 324 (382)
T ss_pred hh-ccCCEEEEchhcc
Confidence 76 5669999988643
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-22 Score=196.54 Aligned_cols=299 Identities=17% Similarity=0.177 Sum_probs=202.9
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHHcCC--CC---CCC----CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 114 LGQGFPNFDGPDFVKDAAIQAIRDGK--NQ---YAR----GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 114 l~~g~p~~~~~~~v~~~~~~~~~~~~--~~---Y~~----~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
|..+...+++|+.+.+++.+.+.+.. .. |.. ..++.++|+.++++++ .+ +++ +|++++|+++++.
T Consensus 3 ld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~-~~~-~v~~~~g~t~al~ 76 (376)
T TIGR01977 3 FDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFN----AP-SSA-HVVFTNNATTALN 76 (376)
T ss_pred ccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhC----cC-CCC-eEEEeCCHHHHHH
Confidence 44444456777888888888876532 12 222 1345577777777775 21 233 7999999999999
Q ss_pred HHHHHccCCCCeEEEcCCCchhHHH----HHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCC
Q 013883 185 ATILGLINPGDEVILFAPFYDSYEA----TLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFT 260 (434)
Q Consensus 185 ~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~ 260 (434)
.++.+++++||+|++..+.|..+.. +.+..|.+++.++.++ ++.+|++.++++++++++++++++|+||||.+++
T Consensus 77 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~ 155 (376)
T TIGR01977 77 IALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDN-EGLISPERIKRAIKTNTKLIVVSHASNVTGTILP 155 (376)
T ss_pred HHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC-CCCcCHHHHHHhcCCCCeEEEEECCCCCccccCC
Confidence 9999999999999999999887643 4455699999998874 6778999999999889999999999999999997
Q ss_pred HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhh-HHHHHH-
Q 013883 261 REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL-TWGVRQ- 338 (434)
Q Consensus 261 ~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~-~~~l~~- 338 (434)
. ++|.++|+++|+++|+|+++...... ..+. ..+-.+++.|..|.++.|. ..|.++..++. +..+..
T Consensus 156 ~---~~i~~l~~~~~~~livD~a~~~g~~~---~~~~----~~~~D~~~~s~~K~l~~p~-g~g~l~~~~~~~~~~~~~~ 224 (376)
T TIGR01977 156 I---EEIGELAQENGIFFILDAAQTAGVIP---IDMT----ELAIDMLAFTGHKGLLGPQ-GTGGLYIREGIKLKPLKSG 224 (376)
T ss_pred H---HHHHHHHHHcCCEEEEEhhhccCccC---CCch----hcCCCEEEecccccccCCC-CceEEEEcCCcCcCceecC
Confidence 4 56888899999999999999753321 1111 1234478899999885332 36777665543 111100
Q ss_pred ---------------HhhccccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCC----ee
Q 013883 339 ---------------AHSFLTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSS----GT 397 (434)
Q Consensus 339 ---------------~~~~~~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~~ 397 (434)
..++...+.+.+...++..+|+.. +...+.++++.+++.+.+.+.|++. |+.+..+. ..
T Consensus 225 ~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 304 (376)
T TIGR01977 225 GTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRV 304 (376)
T ss_pred CCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccC
Confidence 001112234444455555555432 1234566778888888999988864 67776431 12
Q ss_pred EEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 398 YFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
..+++.+. +. +..++...|.+++||.+.+|..|
T Consensus 305 ~~v~~~~~--~~-~~~~~~~~L~~~~gi~v~~g~~~ 337 (376)
T TIGR01977 305 GVVSFTVE--GI-DSEEVADILDEKFDIATRTGLHC 337 (376)
T ss_pred CeEEEEEC--CC-CHHHHHHHHhccCCEEEEccccc
Confidence 24444442 22 46778888876669999988643
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-22 Score=195.47 Aligned_cols=273 Identities=19% Similarity=0.197 Sum_probs=191.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCC-------
Q 013883 123 GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGD------- 195 (434)
Q Consensus 123 ~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd------- 195 (434)
+++.+.+++.++..+ |. +..++++++.+++.+.+|. + ++++++|+++++.+++.+++++||
T Consensus 25 ~~~~v~~a~~~~~~~----~~---~~~~~~~~~~~~~a~~~g~----~-~~~~~~g~t~al~~al~al~~~Gd~~~~~~~ 92 (363)
T TIGR01437 25 VSDEVADAQKRGAQN----YF---EIKELVNKTGEYIANLLGV----E-DAVIVSSASAGIAQSVAAVITRGNRYLVENL 92 (363)
T ss_pred CCHHHHHHHHHHHhc----CC---CHHHHHHHHHHHHHHhhCC----C-eEEEEcCHHHHHHHHHHHHhcCCCcchhhcc
Confidence 578888888888643 32 4568888888888877774 4 689999999999999999999998
Q ss_pred --------eEEEcCCCchhH----HHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEE-ecCCCCCcccCCCHH
Q 013883 196 --------EVILFAPFYDSY----EATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAIL-MNTPHNPTGKMFTRE 262 (434)
Q Consensus 196 --------~Vlv~~p~y~~~----~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~-~~~p~NPTG~~~~~e 262 (434)
+|+++.|.|..| ..++...|++++.++.+ +.+|++.+++++++++++++ +++||||+|.+.+.
T Consensus 93 ~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~---~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~~- 168 (363)
T TIGR01437 93 HDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA---NECSAEQLEAAITEKTAAILYIKSHHCVQKSMLSV- 168 (363)
T ss_pred cccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC---CCCCHHHHHHhcChhceEEEEEecCCCCcCCcCCH-
Confidence 999999888766 56778899999988763 56899999999999999876 57889999998865
Q ss_pred HHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhc
Q 013883 263 ELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSF 342 (434)
Q Consensus 263 ~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~ 342 (434)
++|+++|++||+++|+|++|..- ......+ +..+++.|++|.+ +|++.|++++++++++.++.....
T Consensus 169 --~~i~~~a~~~gi~vivD~a~~~~-----~~~~~~~----g~D~~~~S~~K~l--~gp~~G~l~~~~~~i~~~~~~~~~ 235 (363)
T TIGR01437 169 --EDAAQVAQEHNLPLIVDAAAEED-----LQKYYRL----GADLVIYSGAKAI--EGPTSGLVLGKKKYIEWVKLQSKG 235 (363)
T ss_pred --HHHHHHHHHcCCeEEEECCCCCc-----hHHHHHc----CCCEEEEeCCccc--CCCceEEEEEcHHHHHHHHhccCC
Confidence 55899999999999999999721 1111111 2347789999976 588999999998888776433211
Q ss_pred c--cc---CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecC--CeeE-----EEeeecCCCCC
Q 013883 343 L--TF---ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPS--SGTY-----FVVVDHTPFGH 409 (434)
Q Consensus 343 ~--~~---~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~--~~~~-----~~~~~~~~~~~ 409 (434)
. .+ ..+..++.++...+.. +..+..+.+.++++.+.+.|+++ |+.+..+ ..+. -+.++....+.
T Consensus 236 ~~~~~~~~~~~~~gl~aAl~~~~~---~~~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~ 312 (363)
T TIGR01437 236 IGRAMKVGKENILGLTAALEQYLS---TGKESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESELGM 312 (363)
T ss_pred CcceeccCHHHHHHHHHHHHHHHc---cCcccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccCCCC
Confidence 1 11 1112233333333332 12233444556677899999886 8877632 1111 12233222233
Q ss_pred CCHHHHHHHHHHhcC--eEEEC
Q 013883 410 ETDIAFCEYLIKEVG--VVAIP 429 (434)
Q Consensus 410 ~~~~~~~~~Ll~~~G--V~v~p 429 (434)
+..++.+.|.+ .| |.+++
T Consensus 313 -~~~~l~~~L~~-~~~~I~~r~ 332 (363)
T TIGR01437 313 -TAADVVQALRQ-GEPAIYTRG 332 (363)
T ss_pred -CHHHHHHHHhc-CCCCEEEee
Confidence 57789888854 35 77664
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=193.42 Aligned_cols=293 Identities=15% Similarity=0.138 Sum_probs=202.1
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccC----CCCeE
Q 013883 122 DGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLIN----PGDEV 197 (434)
Q Consensus 122 ~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~----~gd~V 197 (434)
++.+.+.+++.+.+...........+..++.+.+.+.+.+..|. +++ ++++++|+++++..++..+.. +||+|
T Consensus 31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~-~~~~~~ggt~a~~~a~~~~~~~~~~~~~~v 107 (371)
T PRK13520 31 EPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHL--PDA-YGYITSGGTEANIQAVRAARNLAKAEKPNI 107 (371)
T ss_pred CchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCC--CCC-CeEEecCcHHHHHHHHHHHHhhccCCCceE
Confidence 35567778887777652111111124455555666666666664 344 688899999999988877653 57999
Q ss_pred EEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcE
Q 013883 198 ILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVL 277 (434)
Q Consensus 198 lv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~ 277 (434)
++.++.|..+...++..|++++.+|.++ ++.+|++.++++++++++.|++++++|+||.+.+ +++|.++|+++|++
T Consensus 108 l~~~~~h~s~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~---l~~I~~l~~~~g~~ 183 (371)
T PRK13520 108 VVPESAHFSFDKAADMLGVELRRAPLDD-DYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDP---IPELSKIALENGIF 183 (371)
T ss_pred EecCcchHHHHHHHHHcCceEEEecCCC-CCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCC---HHHHHHHHHHcCCC
Confidence 9999999999999999999999999874 6788999999999988888888889999999986 66788889999999
Q ss_pred EEEcCcCCccccC--CCCccccCCCCCCCceEEEccCChhhccccceeeeEEe-ChhhHHHHHHHhhcc--------ccC
Q 013883 278 VFSDEVYDKLAFE--MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA-PPHLTWGVRQAHSFL--------TFA 346 (434)
Q Consensus 278 iI~Deay~~~~~~--~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~-~~~~~~~l~~~~~~~--------~~~ 346 (434)
+++|++|..+... .....+ .+. ...-..+..|..| ++++|.++|+++. ++++++.+.....+. ..+
T Consensus 184 livD~a~~~~~~~~~~~~~~~-~~~-~~~vd~~~~s~~K-~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt 260 (371)
T PRK13520 184 LHVDAAFGGFVIPFLDDPPNF-DFS-LPGVDSITIDPHK-MGLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGT 260 (371)
T ss_pred EEEEecchhHHHHhhcCCCCc-ccc-CCCCceEEECCcc-ccCccCCceEEEEcCHHHHHhhcccCccccCCCCcceEee
Confidence 9999999876532 111111 111 1112234457778 5557888998776 555666554211111 111
Q ss_pred CchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCE-eecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcC
Q 013883 347 TSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFK-VFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVG 424 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~G 424 (434)
.+.....++..+|+.. ++.+++.+++..++++.+.+.|+++|++ +..+..+++ .+.+. +..++..+|.++ |
T Consensus 261 ~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~v-~~~~~-----~~~~v~~~L~~~-g 333 (371)
T PRK13520 261 RSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKERGFEPVIEPVLNIV-AFDDP-----NPDEVREKLRER-G 333 (371)
T ss_pred ccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhCCCEEecCCCceEE-EEecC-----CHHHHHHHHHHC-C
Confidence 2334455566666542 3456778888999999999999988988 566666644 44442 367888888665 9
Q ss_pred eEEECCC
Q 013883 425 VVAIPTS 431 (434)
Q Consensus 425 V~v~pG~ 431 (434)
|.+.++.
T Consensus 334 i~v~~~~ 340 (371)
T PRK13520 334 WRVSVTR 340 (371)
T ss_pred ceeccCC
Confidence 9988753
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=193.32 Aligned_cols=193 Identities=23% Similarity=0.343 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc-cCCCCeEEEcCCC
Q 013883 125 DFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL-INPGDEVILFAPF 203 (434)
Q Consensus 125 ~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vlv~~p~ 203 (434)
+...+++.+++..+.. + |..++++++.+++.+..| .+ ++++++|+++++.+++.++ ++|||+|++++++
T Consensus 11 ~~e~~a~~~~~~~~~~-~----~~g~~~~~~e~~la~~~g----~~-~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t 80 (376)
T TIGR02379 11 GQELEYIAEAISEGKL-S----GDGPFSRRCETWLENRTG----TK-KALLTPSCTAALEMAALLLDIQPGDEVIMPSYT 80 (376)
T ss_pred HHHHHHHHHHHHcCCc-c----CCcHHHHHHHHHHHHHhC----CC-eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCC
Confidence 4456777777766432 1 223556666666665544 34 7999999999999999887 8999999999999
Q ss_pred chhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCc
Q 013883 204 YDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEV 283 (434)
Q Consensus 204 y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Dea 283 (434)
|..+...+...|++++.++++++++.+|++.+++++++++++|+ |+||+|...+ +++|.++|++||++||+|++
T Consensus 81 ~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~~tk~Ii---p~~~~G~~~d---~~~I~~la~~~~i~vIeDaa 154 (376)
T TIGR02379 81 FVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITHRTKAIV---PVHYAGVACD---MDTIMALANKHQLFVIEDAA 154 (376)
T ss_pred cHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCCCCccC---HHHHHHHHHHCCCEEEEECc
Confidence 99999999999999999999977789999999999999999986 6778999874 66799999999999999999
Q ss_pred CCccc-cCCCCccccCCCCCCCceEEEccC--ChhhccccceeeeEEeC-hhhHHHHHHHhh
Q 013883 284 YDKLA-FEMDHISIASLPGMYERTVTMNSL--GKTFSLTGWKIGWAIAP-PHLTWGVRQAHS 341 (434)
Q Consensus 284 y~~~~-~~~~~~~~~~~~~~~~~~i~i~S~--SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~ 341 (434)
|..+. +++.. +..+ .+ +.+.|| +|.+. +|.+.|+++++ +++.++++.++.
T Consensus 155 ~~~g~~~~~~~--~g~~---~~--~~~fSf~~~K~l~-~g~~gG~v~~~~~~~~~~~~~~~~ 208 (376)
T TIGR02379 155 QGVMSTYKGRA--LGSI---GH--LGTFSFHETKNYT-SGGEGGALLINDQAFIERAEIIRE 208 (376)
T ss_pred cccCCccCCcc--cCCC---CC--EEEEeCCCCCcCc-ccCCceEEEECCHHHHHHHHHHHH
Confidence 98764 44322 2111 11 223333 38886 78789998886 788888877665
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=200.76 Aligned_cols=308 Identities=14% Similarity=0.110 Sum_probs=195.6
Q ss_pred CCeeEeCCCCCCCC---CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFPNFD---GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p~~~---~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...+||..|+-... .+|.+.+++.+++......... . ..+..+.+.+.+.+..+ .+ .+++++++++|+..
T Consensus 31 ~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~----~~-~~~~~~SGs~A~e~ 103 (400)
T PTZ00125 31 KKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRA-F-YNDVLGLAEKYITDLFG----YD-KVLPMNSGAEAGET 103 (400)
T ss_pred CEEEEcccCHhhccCCcCCHHHHHHHHHHHHhccccccc-c-cCHHHHHHHHHHHhCCC----CC-EEEEeCCcHHHHHH
Confidence 36789987755544 4788999998887653222111 1 12344455555554433 24 68888888999999
Q ss_pred HHHHcc----------CCCCeEEEcCCCchhHHHHH-HHcCCEEEEEEcCC--CC----CCCCHHHHHhhcc-cCCcEEE
Q 013883 186 TILGLI----------NPGDEVILFAPFYDSYEATL-SMAGAKIKCITLRP--PD----FAIPIEELKSTIS-KNTRAIL 247 (434)
Q Consensus 186 ~~~~l~----------~~gd~Vlv~~p~y~~~~~~~-~~~G~~~~~v~~~~--~~----~~~d~~~l~~~i~-~~~~~i~ 247 (434)
++..+. ..++.|++.+-.|++..... ...+.......+.+ .+ ...|++.+++.++ +++++|+
T Consensus 104 al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~ 183 (400)
T PTZ00125 104 ALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFI 183 (400)
T ss_pred HHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEE
Confidence 988663 13477888888887754333 22222111000000 00 1138999999996 5788999
Q ss_pred ecCCCCCcccCCC-HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeE
Q 013883 248 MNTPHNPTGKMFT-REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWA 326 (434)
Q Consensus 248 ~~~p~NPTG~~~~-~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~ 326 (434)
++.++||||.+++ .+.+++|.++|++||+++|+||+|.++.+.|...........+| +.++||.++.+++|+||+
T Consensus 184 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd----~~~~sK~l~~g~~~ig~v 259 (400)
T PTZ00125 184 VEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPD----IVLLGKALSGGLYPISAV 259 (400)
T ss_pred EcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCC----EEEEcccccCCCcCcEEE
Confidence 9888999999886 45599999999999999999999988766554322211111122 335789998444599999
Q ss_pred EeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh----CCCE-eecCCeeEEEe
Q 013883 327 IAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA----VGFK-VFPSSGTYFVV 401 (434)
Q Consensus 327 ~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~-~~~~~~~~~~~ 401 (434)
++++++++.+.......+++.+++.+.++.++|+..++ +...++.+++.+.+++.|++ .++. ...+ .|.+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-~g~~~~ 336 (400)
T PTZ00125 260 LANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKE--EKLAENAQRLGEVFRDGLKELLKKSPWVKEIRG-KGLLNA 336 (400)
T ss_pred EEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEec-ccEEEE
Confidence 99999988876555555778888888888777764211 12233444455555555544 3432 2344 445555
Q ss_pred eecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 402 VDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 402 ~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+.+......+..+++++|++ +||.+.|+.
T Consensus 337 v~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~ 365 (400)
T PTZ00125 337 IVFDHSDGVNAWDLCLKLKE-NGLLAKPTH 365 (400)
T ss_pred EEEccCcchHHHHHHHHHHH-CCeEEeecC
Confidence 65532111245678888875 599999864
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=194.06 Aligned_cols=211 Identities=18% Similarity=0.197 Sum_probs=159.3
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCC----CchhHHHHHHHcCCEEEEEE
Q 013883 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAP----FYDSYEATLSMAGAKIKCIT 222 (434)
Q Consensus 147 G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p----~y~~~~~~~~~~G~~~~~v~ 222 (434)
...+|+++++++++ . +. .+++++| ++++..++.+++++||+|+++.| +|..+...++..|+++..++
T Consensus 46 ~~~~L~~~lA~l~g------~-~~-~v~~~sG-~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~ 116 (376)
T PRK06460 46 TVLELTKKIVELEN------A-EM-GVAFSSG-MGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASN 116 (376)
T ss_pred cHHHHHHHHHHHhC------C-Cc-EEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEEC
Confidence 56789999999886 2 22 4666555 78999999999999999999875 45556677888999988877
Q ss_pred cCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCC
Q 013883 223 LRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM 302 (434)
Q Consensus 223 ~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~ 302 (434)
.+ +.+.+++.+++++++|++++|+||||.+++.+ +|+++|+++|+++|+||+|.... ....+ .
T Consensus 117 ~~------~~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~---~I~~la~~~g~~vivDea~~~~~------~~~~l--~ 179 (376)
T PRK06460 117 PG------SDNIIEKAKSKRYDVVFVENITNPLLRVVDIT---ELSKVCKENGSILIVDATFSTPI------NQKPL--E 179 (376)
T ss_pred CC------CHHHHHHhcCCCceEEEEECCCCCCCcccCHH---HHHHHHHHcCCEEEEECCcCccc------cCChh--h
Confidence 54 23445665667899999999999999999765 58888999999999999997532 11111 1
Q ss_pred CCceEEEccCChhhc-cccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 013883 303 YERTVTMNSLGKTFS-LTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILV 381 (434)
Q Consensus 303 ~~~~i~i~S~SK~~g-~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~ 381 (434)
.+.++++.|+||.++ ..|.|+||++++++++++++..+.....+.++. .+..+++. .++++...+++.++++.+.
T Consensus 180 ~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g~~~~~~---~a~~~l~~-~~~l~~r~~~~~~n~~~l~ 255 (376)
T PRK06460 180 LGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSLDPH---AAYLTLRG-IKTLKIRMDVINRNAEQIA 255 (376)
T ss_pred cCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcCCCCCHH---HHHHHHhc-hhhHHHHHHHHHHHHHHHH
Confidence 235689999999985 223679999999999998887776554444442 33344443 4578888889999999999
Q ss_pred HHhhhC
Q 013883 382 EGLNAV 387 (434)
Q Consensus 382 ~~L~~~ 387 (434)
+.|++.
T Consensus 256 ~~L~~~ 261 (376)
T PRK06460 256 EFLEGH 261 (376)
T ss_pred HHHHcC
Confidence 999875
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-21 Score=191.26 Aligned_cols=276 Identities=18% Similarity=0.173 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc-cCCCCeEEEcCCC
Q 013883 125 DFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL-INPGDEVILFAPF 203 (434)
Q Consensus 125 ~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vlv~~p~ 203 (434)
+...+++.+.+..+...+.+ ...+|+++++++++ .+ ++++++|+++|+.+++.++ +++||+|++++|+
T Consensus 14 ~~e~~~~~~~l~~~~~~~g~--~~~~le~~la~~~g--------~~-~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~ 82 (379)
T PRK11658 14 DEELAAVKEVLRSGWITTGP--KNQALEQAFCQLTG--------NQ-HAIAVSSATAGMHITLMALGIGPGDEVITPSLT 82 (379)
T ss_pred HHHHHHHHHHHHcCCccCCH--hHHHHHHHHHHHhC--------CC-eEEEECCHHHHHHHHHHHcCCCCCCEEEECCCc
Confidence 44466777777765443333 46899999999987 34 6788899999999999999 8999999999999
Q ss_pred chhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCc
Q 013883 204 YDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEV 283 (434)
Q Consensus 204 y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Dea 283 (434)
|..+...+...|++++.++++++++.+|++.+++++++++++|+ |+|++|... ++++|.++|++||+++|+|++
T Consensus 83 ~~~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~~tkav~---~~~~~G~~~---d~~~i~~~a~~~gi~vi~D~a 156 (379)
T PRK11658 83 WVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITPRTKAII---PVHYAGAPA---DLDAIRAIGERYGIPVIEDAA 156 (379)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcccCCeEEE---EeCCCCCcC---CHHHHHHHHHHcCCeEEEECC
Confidence 99999999999999999999876788999999999999999887 667899877 467799999999999999999
Q ss_pred CCc-cccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC-hhhHHHHHHHhhcccc----------------
Q 013883 284 YDK-LAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLTF---------------- 345 (434)
Q Consensus 284 y~~-~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~~~---------------- 345 (434)
|.. ..+.+.. +. .. . +.+.||++...+++.+.|+++.+ +++.++++..+.....
T Consensus 157 ~a~g~~~~~~~--~g---~~-g--~~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 228 (379)
T PRK11658 157 HAVGTYYKGRH--IG---AR-G--TAIFSFHAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAE 228 (379)
T ss_pred CccCCeECCee--cC---CC-C--CEEEeCCCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcce
Confidence 984 3333321 11 11 1 24567775555567788988875 7787777765432110
Q ss_pred ----CC-chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCE-eecC----CeeEEEe-eecCC--CCCCCH
Q 013883 346 ----AT-STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFK-VFPS----SGTYFVV-VDHTP--FGHETD 412 (434)
Q Consensus 346 ----~~-~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~----~~~~~~~-~~~~~--~~~~~~ 412 (434)
+. ..+....++..+.. .+.+++..++.++..+.+.+.|.++++. +..+ ...++.+ +.+.. .+. +.
T Consensus 229 ~~~~G~n~~~~~l~AAl~~~q-l~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r 306 (379)
T PRK11658 229 VLTPGYKYNLADINAAIALVQ-LAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEERCGI-SR 306 (379)
T ss_pred eeccccccCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCccccC-CH
Confidence 00 00111111111111 2345666666667777777888776533 2222 1222222 22221 122 46
Q ss_pred HHHHHHHHHhcCeEEE
Q 013883 413 IAFCEYLIKEVGVVAI 428 (434)
Q Consensus 413 ~~~~~~Ll~~~GV~v~ 428 (434)
.++.++|. ++||.+.
T Consensus 307 ~~~~~~L~-~~gI~~~ 321 (379)
T PRK11658 307 DALMEALK-ERGIGTG 321 (379)
T ss_pred HHHHHHHH-HCCCCCc
Confidence 67888885 4598754
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=192.74 Aligned_cols=283 Identities=19% Similarity=0.139 Sum_probs=193.3
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCCCC---------cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc-
Q 013883 122 DGPDFVKDAAIQAIRDGKNQYARGHG---------VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI- 191 (434)
Q Consensus 122 ~~~~~v~~~~~~~~~~~~~~Y~~~~G---------~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~- 191 (434)
+.++.+.+++.+.+.+. ..++.... +.++|+.++++++ .+++ +|++++|+++++..++..+.
T Consensus 10 ~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~-~i~~t~~~t~a~~~al~~~~~ 81 (379)
T TIGR03402 10 RVDPEVLEAMLPYFTEY-FGNPSSMHSFGGEVGKAVEEAREQVAKLLG------AEPD-EIIFTSGGTESDNTAIKSALA 81 (379)
T ss_pred CCCHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHHHHHHHHHHHHhC------CCCC-eEEEeCcHHHHHHHHHHHHHH
Confidence 34567888887776542 22222111 2344555555554 4466 89999999999999888764
Q ss_pred --CCCCeEEEcCCCchhHHHH---HHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 192 --NPGDEVILFAPFYDSYEAT---LSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 192 --~~gd~Vlv~~p~y~~~~~~---~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
.+||+|++....|+.+... +...|++++.+|.++ ++.+|++.++++++++++++++++++||||.+++. ++
T Consensus 82 ~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~---~~ 157 (379)
T TIGR03402 82 AQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDE-EGRLDLEELRAAITDDTALVSVMWANNETGTIFPI---EE 157 (379)
T ss_pred hcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCC-CCcCCHHHHHHhcCCCcEEEEEEcccCCeeecccH---HH
Confidence 4568899988888776543 445699999999864 57799999999999999999999999999999975 56
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHH-------
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA------- 339 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~------- 339 (434)
|.++|+++|+++|+|+++.... ....+.. .+-.+++.|..|.+|.+| +|+++.+++.. +...
T Consensus 158 I~~l~~~~g~~vivD~~~~~g~---~~~~~~~----~~~D~~~~s~~K~~gp~G--~g~l~v~~~~~--~~p~~~g~~~~ 226 (379)
T TIGR03402 158 IGEIAKERGALFHTDAVQAVGK---IPIDLKE----MNIDMLSLSGHKLHGPKG--VGALYIRKGTR--FRPLLRGGHQE 226 (379)
T ss_pred HHHHHHHcCCEEEEECcccccc---cccCccc----CCCCEEEEcHHHcCCCCc--eEEEEECCCCC--CCCcccCCccC
Confidence 8899999999999999997421 1122221 123466778889777556 88888876541 1100
Q ss_pred hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh-C-CCEeecCC-----eeEEEeeecCCCCCCCH
Q 013883 340 HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA-V-GFKVFPSS-----GTYFVVVDHTPFGHETD 412 (434)
Q Consensus 340 ~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~-----~~~~~~~~~~~~~~~~~ 412 (434)
......+++.+...++..+++...+++++..+++++.++.+++.|++ + ++.+..+. +...+++.. . ++
T Consensus 227 ~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~ 301 (379)
T TIGR03402 227 RGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEY----I-EG 301 (379)
T ss_pred CCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecC----C-CH
Confidence 01123345555566666666654556777788889999999999875 4 66665432 223334332 1 46
Q ss_pred HHHHHHHHHhcCeEEECCCCC
Q 013883 413 IAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 413 ~~~~~~Ll~~~GV~v~pG~~F 433 (434)
.+++..| +++||.+.+|..|
T Consensus 302 ~~~~~~l-~~~gI~v~~g~~c 321 (379)
T TIGR03402 302 EAILLLL-DMEGICASSGSAC 321 (379)
T ss_pred HHHHHhh-ccCCEEEEchhhc
Confidence 6787766 5679999998754
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-21 Score=189.44 Aligned_cols=290 Identities=15% Similarity=0.164 Sum_probs=193.4
Q ss_pred CcHHHHHHHHHHHHcC--CCC-CCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc------CC
Q 013883 123 GPDFVKDAAIQAIRDG--KNQ-YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI------NP 193 (434)
Q Consensus 123 ~~~~v~~~~~~~~~~~--~~~-Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~------~~ 193 (434)
+.+.+.+++....... ... | .|..++.+.+.+.+.+..|. +++ ++++++|+++++..++.++. ++
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~g~--~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 105 (373)
T TIGR03812 32 PHPIAVKAYDMFIETNLGDPGLF---PGTKKIEEEVVGSLGNLLHL--PDA-YGYIVSGGTEANIQAVRAAKNLAREEKR 105 (373)
T ss_pred chHHHHHHHHHHhhcCCCCcccC---ccHHHHHHHHHHHHHHHhCC--CCC-CeEEeccHHHHHHHHHHHHHHHHhccCC
Confidence 4445566665554432 112 2 13344445555555555554 344 68889999999888776653 46
Q ss_pred CCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHH
Q 013883 194 GDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIE 273 (434)
Q Consensus 194 gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~ 273 (434)
||+|+++++.|..+...++..|++++.++.++ ++.+|++.++++++++++.+++.+|+||||...+ +++|.++|++
T Consensus 106 g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~ 181 (373)
T TIGR03812 106 TPNIIVPESAHFSFEKAAEMLGLELRYAPLDE-DYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDD---IEELSKIALE 181 (373)
T ss_pred CcEEEECCcchHHHHHHHHHcCCeEEEEeeCC-CCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCC---HHHHHHHHHH
Confidence 79999999999999999999999999999874 6789999999999888766666668999999875 6668889999
Q ss_pred cCcEEEEcCcCCccccCCCC--ccccCCC-CCCCceEEEccCChhhccccceeeeEE-eChhhHHHHHHHhhccc-----
Q 013883 274 NDVLVFSDEVYDKLAFEMDH--ISIASLP-GMYERTVTMNSLGKTFSLTGWKIGWAI-APPHLTWGVRQAHSFLT----- 344 (434)
Q Consensus 274 ~~~~iI~Deay~~~~~~~~~--~~~~~~~-~~~~~~i~i~S~SK~~g~~G~R~G~~~-~~~~~~~~l~~~~~~~~----- 344 (434)
+|+++|+|++|..+...-.. .....+. ....-..+..|..| +++++.|.|+++ .++++++.++....+..
T Consensus 182 ~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K-~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (373)
T TIGR03812 182 NGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHK-MGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQA 260 (373)
T ss_pred cCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccc-cCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCc
Confidence 99999999999865421000 0000000 00011234456779 666778888665 57777766642111111
Q ss_pred ---cCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCE-eecCCeeEEEeeecCCCCCCCHHHHHHHH
Q 013883 345 ---FATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFK-VFPSSGTYFVVVDHTPFGHETDIAFCEYL 419 (434)
Q Consensus 345 ---~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 419 (434)
.+.+.....++..+|+. .++.+++..+++.++++++++.|+++|+. +.++..+ ++.+.+. +..++.++|
T Consensus 261 ~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~v~~~~~-----~~~~v~~~L 334 (373)
T TIGR03812 261 TITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIEPVLN-IVAFEVD-----DPEEVRKKL 334 (373)
T ss_pred ceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCCCce-EEEEEeC-----CHHHHHHHH
Confidence 12234455566666664 24567788899999999999999999875 4444555 3444442 245788888
Q ss_pred HHhcCeEEECC
Q 013883 420 IKEVGVVAIPT 430 (434)
Q Consensus 420 l~~~GV~v~pG 430 (434)
.++ ||.+.++
T Consensus 335 ~~~-gi~v~~~ 344 (373)
T TIGR03812 335 RDR-GWYVSVT 344 (373)
T ss_pred HHC-CceeccC
Confidence 655 9999875
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=194.73 Aligned_cols=299 Identities=17% Similarity=0.170 Sum_probs=199.9
Q ss_pred cCCeeEeCCC----CCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 108 KHGAINLGQG----FPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 108 ~~~~i~l~~g----~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
+...|||..| +-++ .+|.+.+++.+++++... ...... .+...++++.+.+..+ .+ .+++++++++|+
T Consensus 34 G~~ylD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~~-~~~~~~-~~~~~~la~~L~~~~~----~~-~~~f~~SGseA~ 105 (397)
T TIGR03246 34 GKEYIDFAGGIAVNALGH-AHPELVKALIEQADKLWH-IGNGYT-NEPVLRLAKKLVDATF----AD-KVFFCNSGAEAN 105 (397)
T ss_pred CCEEEECCcCHhhccCCC-CCHHHHHHHHHHHHhccc-ccCccC-CHHHHHHHHHHHhhCC----CC-EEEEeCCcHHHH
Confidence 3467898775 2344 478899999988876321 111111 2344555666554433 34 799999999999
Q ss_pred HHHHHHcc-------CC-CCeEEEcCCCchhHHH-HHHHcCCE------------EEEEEcCCCCCCCCHHHHHhhcccC
Q 013883 184 AATILGLI-------NP-GDEVILFAPFYDSYEA-TLSMAGAK------------IKCITLRPPDFAIPIEELKSTISKN 242 (434)
Q Consensus 184 ~~~~~~l~-------~~-gd~Vlv~~p~y~~~~~-~~~~~G~~------------~~~v~~~~~~~~~d~~~l~~~i~~~ 242 (434)
..+++... .+ .++|+..+-.|++... .+...+.. +..+|+ .|++.+++.+.++
T Consensus 106 e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~ 179 (397)
T TIGR03246 106 EAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY------NDLAAAKALISDK 179 (397)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC------CCHHHHHHHhccC
Confidence 99988652 12 3567777777777543 33333321 122222 2789999999888
Q ss_pred CcEEEecCCCCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccc
Q 013883 243 TRAILMNTPHNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGW 321 (434)
Q Consensus 243 ~~~i~~~~p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~ 321 (434)
+++|+++.++++.|+.+ +.+.+++|.++|++||+++|+||+|.++.+.|.......+.-.+| +.+++|.+| .|+
T Consensus 180 ~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pD----i~t~~K~lg-gG~ 254 (397)
T TIGR03246 180 TCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD----ILTSAKALG-GGF 254 (397)
T ss_pred eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCC----EEEeehhhh-CCc
Confidence 88888886666677654 789999999999999999999999988866554333222222222 448999998 899
Q ss_pred eeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC-----CEeecCCe
Q 013883 322 KIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG-----FKVFPSSG 396 (434)
Q Consensus 322 R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-----~~~~~~~~ 396 (434)
|+||+++++++++.+.......+++.+++.+.++.++|+..+ .+++.++++++.+++++.|++++ +..+...|
T Consensus 255 pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G 332 (397)
T TIGR03246 255 PIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVN--TPELLAGVKQRHDLFVDGLEKINARYNVFSEIRGKG 332 (397)
T ss_pred ceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHhcCCCeEeeecCc
Confidence 999999999998877654444567788888888888887532 13567788888888888887764 22233444
Q ss_pred eEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 397 TYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
.++ .+.+.+........+++.|+++ ||.+.+
T Consensus 333 ~~~-~i~~~~~~~~~~~~~~~~l~~~-Gv~~~~ 363 (397)
T TIGR03246 333 LLI-GAVLTEAYQGKAKQFVNAAAEE-GVIALI 363 (397)
T ss_pred eEE-EEEEcCchhhHHHHHHHHHHHC-CeEEee
Confidence 443 3333211011356788888765 999876
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.9e-22 Score=195.17 Aligned_cols=210 Identities=20% Similarity=0.256 Sum_probs=159.3
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHH----HHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA----TLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~v~~ 223 (434)
..+|++.++++++ .+ ++++++|+++|+..++.+++++||+|+++.+.|.+... .+...|++++.++.
T Consensus 63 ~~~le~~la~l~g--------~~-~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 133 (390)
T PRK08133 63 VTMFQERLAALEG--------AE-ACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDL 133 (390)
T ss_pred HHHHHHHHHHHhC--------CC-cEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECC
Confidence 4567788877765 34 68888999999999999999999999999998876543 45678999998876
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
+ |++.+++++++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|....... ++ . .
T Consensus 134 ~------d~~~l~~~i~~~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~~---pl-~----~ 196 (390)
T PRK08133 134 T------DLDAWRAAVRPNTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQQ---PL-K----L 196 (390)
T ss_pred C------CHHHHHHhcCcCCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccCC---ch-h----h
Confidence 4 689999999999999999999999999984 6789999999999999999986543221 11 1 1
Q ss_pred CceEEEccCChhhcccccee-eeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSLTGWKI-GWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVE 382 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G~R~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~ 382 (434)
+..+++.|++|.++.+|.++ ||+++++++++.+...........+...++ .+++..+ .+....+++.++...+.+
T Consensus 197 g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~---~~l~gl~-tl~~R~~~~~~~a~~la~ 272 (390)
T PRK08133 197 GADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAW---VFLKGLE-TLSLRMEAHSANALALAE 272 (390)
T ss_pred CCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHH---HHHcccc-hHHHHHHHHHHHHHHHHH
Confidence 23478999999998789887 677788887777665554433344444333 3344322 455556677778888888
Q ss_pred HhhhC
Q 013883 383 GLNAV 387 (434)
Q Consensus 383 ~L~~~ 387 (434)
.|++.
T Consensus 273 ~L~~~ 277 (390)
T PRK08133 273 WLEAH 277 (390)
T ss_pred HHHhC
Confidence 88875
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-21 Score=188.12 Aligned_cols=276 Identities=21% Similarity=0.268 Sum_probs=186.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc-cCCCCeEEEcCCCch
Q 013883 127 VKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL-INPGDEVILFAPFYD 205 (434)
Q Consensus 127 v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vlv~~p~y~ 205 (434)
..+++.+.+..+. .| |..++++++++++.+..|. + ++++++|+++++.+++.++ +++||+|+++.|+|.
T Consensus 13 ~~~~~~~~l~~~~-~~----g~~~~~~~~e~~la~~~g~----~-~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~ 82 (375)
T PRK11706 13 ELDYIQQAMSSGK-LC----GDGGFTRRCQQWLEQRFGS----A-KVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFV 82 (375)
T ss_pred HHHHHHHHHHcCC-cc----CCCHHHHHHHHHHHHHhCC----C-eEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcH
Confidence 3556667666542 22 2345677777777666553 4 7999999999999887766 799999999999999
Q ss_pred hHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCC
Q 013883 206 SYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYD 285 (434)
Q Consensus 206 ~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~ 285 (434)
.+...+...|++++.++++++++.+|++.+++++++++++|+++ |++|... ++++|.++|++||++||+|++|.
T Consensus 83 ~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~~tk~i~~~---~~~G~~~---~~~~i~~la~~~~i~vIeD~a~a 156 (375)
T PRK11706 83 STANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITPKTRAIVPV---HYAGVAC---EMDTIMALAKKHNLFVVEDAAQG 156 (375)
T ss_pred HHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCCCCeEEEEe---CCCCCcc---CHHHHHHHHHHcCCEEEEECccc
Confidence 99999999999999999987778899999999999899999865 4699776 46779999999999999999998
Q ss_pred ccc-cCCCCccccCCCCCCCceEEEccCC--hhhccccceeeeEEeChhhHHHHHHHhhcc-----------------cc
Q 013883 286 KLA-FEMDHISIASLPGMYERTVTMNSLG--KTFSLTGWKIGWAIAPPHLTWGVRQAHSFL-----------------TF 345 (434)
Q Consensus 286 ~~~-~~~~~~~~~~~~~~~~~~i~i~S~S--K~~g~~G~R~G~~~~~~~~~~~l~~~~~~~-----------------~~ 345 (434)
.+. +++. .+..+. .+.+.||. |.++ +|.+.++++.++++.++++.++... ..
T Consensus 157 ~g~~~~~~--~~g~~~-----~~~~~Sf~~~K~l~-~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 228 (375)
T PRK11706 157 VMSTYKGR--ALGTIG-----HIGCFSFHETKNYT-AGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDI 228 (375)
T ss_pred cccccCCe--eeecCc-----CEEEEeCCCCcccc-ccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeec
Confidence 775 3332 222221 13344544 9998 6888888888889988877766421 01
Q ss_pred CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC----CEee--cCC---eeEEEeeecCCCCCCCHHHHH
Q 013883 346 ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG----FKVF--PSS---GTYFVVVDHTPFGHETDIAFC 416 (434)
Q Consensus 346 ~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~ 416 (434)
+.+.......++.+....+.+++..++.+++.+.+.+.|.++. +... ++. ..++.++.+.+ + .+..++.
T Consensus 229 g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~r~~l~ 306 (375)
T PRK11706 229 GSSYLPSELQAAYLWAQLEAADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRD-L-EDRSALI 306 (375)
T ss_pred ccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECC-c-CCHHHHH
Confidence 2222112122222211122355555555666667777776642 2321 211 12234454432 2 2466788
Q ss_pred HHHHHhcCeEEEC
Q 013883 417 EYLIKEVGVVAIP 429 (434)
Q Consensus 417 ~~Ll~~~GV~v~p 429 (434)
+.|.+ +||.+..
T Consensus 307 ~~L~~-~gI~~~~ 318 (375)
T PRK11706 307 NFLKE-AGIMAVF 318 (375)
T ss_pred HHHHH-CCCCccc
Confidence 87765 5998753
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-21 Score=185.32 Aligned_cols=297 Identities=19% Similarity=0.220 Sum_probs=221.2
Q ss_pred cCCeeEeCCC-CCCCCCcHHHHHHHHHHHHcC-C--C----CCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCCh
Q 013883 108 KHGAINLGQG-FPNFDGPDFVKDAAIQAIRDG-K--N----QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGC 179 (434)
Q Consensus 108 ~~~~i~l~~g-~p~~~~~~~v~~~~~~~~~~~-~--~----~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~ 179 (434)
+..++||+.+ |.++...|.+.+++.+++++- . . -++...-+.+|.+.+|+|++ .++.+++++|
T Consensus 38 ~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g--------~e~al~f~SG- 108 (388)
T COG0156 38 GRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLG--------AEAALLFSSG- 108 (388)
T ss_pred CceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhC--------CCcEEEEccc-
Confidence 3468999887 899999999999999998872 1 1 12222234567777777776 4424555555
Q ss_pred HHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc------CCcEEEecCCCC
Q 013883 180 TEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK------NTRAILMNTPHN 253 (434)
Q Consensus 180 ~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~i~~~~p~N 253 (434)
..++..++.++++++|.|+...-.|.+..+.++..+++++.+... |++.||+.+.+ +.+.|+....-.
T Consensus 109 y~AN~~~i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~Hn------D~~~Le~~l~~~~~~~~~~~~IvtegVfS 182 (388)
T COG0156 109 FVANLGLLSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKHN------DLDHLEALLEEARENGARRKLIVTEGVFS 182 (388)
T ss_pred chhHHHHHHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecCC------CHHHHHHHHHhhhccCCCceEEEEecccc
Confidence 888888999999999999999999999999999999999988754 78999999866 246667777888
Q ss_pred CcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCC--CCceEEEccCChhhccccceeeeEEeChh
Q 013883 254 PTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM--YERTVTMNSLGKTFSLTGWKIGWAIAPPH 331 (434)
Q Consensus 254 PTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~--~~~~i~i~S~SK~~g~~G~R~G~~~~~~~ 331 (434)
..|.+.| +++|++++++|+.++++||+|+...+++....+....+. .+..|.++||||.||..| ||+.++..
T Consensus 183 MdGdiAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G---g~v~g~~~ 256 (388)
T COG0156 183 MDGDIAP---LPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG---GYIAGSAA 256 (388)
T ss_pred CCCCcCC---HHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC---ceeeCcHH
Confidence 8998875 666999999999999999999998888655544422222 345899999999999777 99999999
Q ss_pred hHHHHHHHhhccccCC--chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCC
Q 013883 332 LTWGVRQAHSFLTFAT--STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGH 409 (434)
Q Consensus 332 ~~~~l~~~~~~~~~~~--~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (434)
+++.+....+...|+. ++....++..+|+..+ .....+++++++...+++.++..|+.+.+.......++ +. +.
T Consensus 257 ~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~-~~~~~r~~L~~~~~~~~~~~~~~~~~~~~s~s~I~pv~-~g--d~ 332 (388)
T COG0156 257 LIDYLRNRARPFIFSTALPPAVAAAALAALRILE-EGPERRERLQELAAFFRSLLKALGLVLLPSESPIIPVI-LG--DE 332 (388)
T ss_pred HHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHhcCCccCCCCCCeeeeE-eC--CH
Confidence 9999987655554443 3334445566666532 23456788888888888777777888755555544322 21 11
Q ss_pred CCHHHHHHHHHHhcCeEEECC
Q 013883 410 ETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 410 ~~~~~~~~~Ll~~~GV~v~pG 430 (434)
....++...|+++ ||++.+-
T Consensus 333 ~~a~~~s~~l~~~-Gi~v~~i 352 (388)
T COG0156 333 ERALEASRALLEE-GIYVSAI 352 (388)
T ss_pred HHHHHHHHHHHHC-CeeEeee
Confidence 2366788888887 9999764
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-21 Score=189.94 Aligned_cols=251 Identities=19% Similarity=0.210 Sum_probs=172.4
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHH----HcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLS----MAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~G~~~~~v~~ 223 (434)
..+|++.++++++ .+..+++++| +.++..++.+++++||+|+++.|.|......+. ..|+++..++.
T Consensus 63 ~~~Le~~lA~l~G--------~~~al~~~sG-~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~ 133 (386)
T PRK06767 63 VKLFEERMAVLEG--------GEEALAFGSG-MAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDM 133 (386)
T ss_pred hHHHHHHHHHHhC--------CCcEEEECCH-HHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCC
Confidence 5788999888876 2324555555 679999999999999999999998887655543 34555554433
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
.|++.+++++++++++|++++|+||||.+++ +++|.++|+++|+++|+|++|....+. .++. .
T Consensus 134 ------~d~~~l~~~i~~~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~---~pl~-----~ 196 (386)
T PRK06767 134 ------ETEADIENKIRPNTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSPYLQ---RPLE-----L 196 (386)
T ss_pred ------CCHHHHHHhhCcCceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCcccccC---Cchh-----c
Confidence 3789999999989999999999999999986 567888899999999999999643322 1111 1
Q ss_pred CceEEEccCChhhcccccee-eeEEeChhhHHHHHH-HhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSLTGWKI-GWAIAPPHLTWGVRQ-AHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILV 381 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G~R~-G~~~~~~~~~~~l~~-~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~ 381 (434)
+..+++.|++|.++.+|.|+ ||++++++.++++.. .+.......+++.++++...|+. +....++..++...+.
T Consensus 197 g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~t----l~~r~~~~~~~a~~la 272 (386)
T PRK06767 197 GCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKT----LAVRMDRHCDNAEKIV 272 (386)
T ss_pred CCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCc----HHHHHHHHHHHHHHHH
Confidence 23478889999998788885 899999888877543 33222233344444444444432 3445677788888999
Q ss_pred HHhhhC-CCEe-e-c----------CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 382 EGLNAV-GFKV-F-P----------SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 382 ~~L~~~-g~~~-~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+.|++. ++.. . | ..||++.| .+.. +.++..+|.++| +..++.+.=|.
T Consensus 273 ~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf-~l~~-~~~~~~~f~~~l-~~~~~~~s~G~ 332 (386)
T PRK06767 273 SFLKNHDAVEGVWYPEGELASRQMKRGGGVISF-SIKG-GKEETQAFINDL-HFITIAVSLGD 332 (386)
T ss_pred HHHHcCCCccEEECCCcHHHHHhCCCCCceEEE-EEcC-CHHHHHHHHHhC-CccEEecCCCC
Confidence 999886 5552 2 1 23555544 3421 222345677766 45566666554
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-21 Score=189.69 Aligned_cols=210 Identities=18% Similarity=0.207 Sum_probs=160.2
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHH----HHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA----TLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~v~~ 223 (434)
..+|++.++++++ .+ ..++++++++|+..++.+++++||+|+++.|.|.+... .+...|++++.++.
T Consensus 66 ~~~le~~lA~l~g--------~~-~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~ 136 (398)
T PRK08249 66 VQAFEEKVRILEG--------AE-AATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET 136 (398)
T ss_pred HHHHHHHHHHHhC--------CC-eEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC
Confidence 4678888888876 33 45666666899999999999999999999999997644 34567888876643
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
.|++.+++++++++++|++++|+||||.+++ +++|+++|+++|+++|+|++|..+... . .+. .
T Consensus 137 ------~d~e~l~~~i~~~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~-~--~l~-----~ 199 (398)
T PRK08249 137 ------GDHEQIEAEIAKGCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQ-N--PLA-----L 199 (398)
T ss_pred ------CCHHHHHHhcCCCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccC-C--chh-----h
Confidence 4899999999999999999999999999996 666888999999999999999865422 1 111 1
Q ss_pred CceEEEccCChhhcccccee-eeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSLTGWKI-GWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVE 382 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G~R~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~ 382 (434)
+..+++.|++|.++..|.++ |+++++++++++++..+.......+...++.+...|+. +....++..+++..+.+
T Consensus 200 ~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~t----L~~R~~~~~~na~~la~ 275 (398)
T PRK08249 200 GADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATMDPMSAYLILRGMKT----LKLRVRQQQESAMALAK 275 (398)
T ss_pred CCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcch----HHHHHHHHHHHHHHHHH
Confidence 23378899999998556664 78888889988888777655566666666655555443 44455666777888888
Q ss_pred HhhhC
Q 013883 383 GLNAV 387 (434)
Q Consensus 383 ~L~~~ 387 (434)
.|++.
T Consensus 276 ~L~~~ 280 (398)
T PRK08249 276 YLQTH 280 (398)
T ss_pred HHHcC
Confidence 88764
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-21 Score=189.70 Aligned_cols=217 Identities=17% Similarity=0.166 Sum_probs=161.9
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHH----cC
Q 013883 140 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSM----AG 215 (434)
Q Consensus 140 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~----~G 215 (434)
.+|+.+ -..+|+++++++.+ .+ ++++++|+++++.+++.+++++||+|+++.|+|.+....+.. .|
T Consensus 46 ~R~~~p-~~~~le~~lA~l~g--------~~-~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~ 115 (382)
T TIGR02080 46 SRSGNP-TRDLLQQALAELEG--------GA-GAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGC 115 (382)
T ss_pred cCCCCc-hHHHHHHHHHHHhC--------CC-cEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcC
Confidence 345443 24678888888765 34 799999999999999999999999999999999975544332 34
Q ss_pred CEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCcc
Q 013883 216 AKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHIS 295 (434)
Q Consensus 216 ~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~ 295 (434)
.++..++ ..|++.+++++++++++|++++|+||||.+++ +++|+++|+++|+++|+|++|..+.... +
T Consensus 116 ~~v~~~d------~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~---p 183 (382)
T TIGR02080 116 FRVLFVD------QGDEQALRAALAQKPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSPALQN---P 183 (382)
T ss_pred eEEEEEC------CCCHHHHHHhcCcCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCcccccCC---c
Confidence 5555442 13789999999989999999999999999986 5568888999999999999997654221 1
Q ss_pred ccCCCCCCCceEEEccCChhhc-cccceeeeEEe-ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHH
Q 013883 296 IASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIA-PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDY 373 (434)
Q Consensus 296 ~~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~ 373 (434)
+ .+ +..+++.|++|.++ .+|.+.|++++ +++++++++..+.....+.+++.++.+...|+ .+....++.
T Consensus 184 l-~~----gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~----tl~~R~~~~ 254 (382)
T TIGR02080 184 L-AL----GADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLR----TLVARMRLQ 254 (382)
T ss_pred h-hh----CCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccc----hHHHHHHHH
Confidence 1 11 12488899999985 57789999877 57788888877776666677776665544443 234445566
Q ss_pred HHHHHHHHHHhhhC
Q 013883 374 SAKKAILVEGLNAV 387 (434)
Q Consensus 374 ~~~~~~l~~~L~~~ 387 (434)
.++...+.+.|++.
T Consensus 255 ~~na~~~a~~L~~~ 268 (382)
T TIGR02080 255 QRNAQAIVEYLQTQ 268 (382)
T ss_pred HHHHHHHHHHHHhC
Confidence 67777788888764
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.4e-20 Score=180.31 Aligned_cols=299 Identities=21% Similarity=0.229 Sum_probs=212.3
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcC--C-C--CCCCCC----CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDG--K-N--QYARGH----GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~--~-~--~Y~~~~----G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~ 180 (434)
+.+.|....-.. .|..+.+++.+..... + + .|.... -+.+.|+.++++++ .++.++|++|.|+|
T Consensus 22 ~~vylD~aa~~~-~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~------a~~~~eIvft~~tT 94 (405)
T COG0520 22 PLVYLDNAATSQ-KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLN------ADSSDEIVFTRGTT 94 (405)
T ss_pred CeEEecCccccc-CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhC------CCCCCeEEEeCChh
Confidence 566676654443 5778888888776541 1 1 122211 23567777777776 45322899999999
Q ss_pred HHHHHHHHHc---cCCCCeEEEcCCCchh----HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCC
Q 013883 181 EAIAATILGL---INPGDEVILFAPFYDS----YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHN 253 (434)
Q Consensus 181 ~ai~~~~~~l---~~~gd~Vlv~~p~y~~----~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~N 253 (434)
+++.++..++ +.+||+|++.+--|++ +....+..|++++.+|.+ +++.+|+|.++..++++||+|.+++.+|
T Consensus 95 ~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~-~~g~~~~~~~~~~i~~~Tklvais~vSn 173 (405)
T COG0520 95 EALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLD-DDGLLDLDALEKLITPKTKLVALSHVSN 173 (405)
T ss_pred HHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecC-CCCCcCHHHHHHhcCCCceEEEEECccc
Confidence 9999999999 6999999999887776 445556679999999998 5899999999999999999999999999
Q ss_pred CcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCCh-hhccccceeeeEEeChhh
Q 013883 254 PTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGK-TFSLTGWKIGWAIAPPHL 332 (434)
Q Consensus 254 PTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK-~~g~~G~R~G~~~~~~~~ 332 (434)
.||.+.| +++|+++|+++|+++++|.+++.-.. ...+.. -+..+++.|..| .+|..| +|++++++++
T Consensus 174 ~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~~h~---~idv~~----l~~Df~afsgHKwl~gP~G--iGvLy~r~~~ 241 (405)
T COG0520 174 VTGTVNP---VKEIAELAHEHGALVLVDAAQAAGHL---PIDVQE----LGCDFLAFSGHKWLLGPTG--IGVLYVRKEL 241 (405)
T ss_pred cccccch---HHHHHHHHHHcCCEEEEECccccCcc---CCCchh----cCCCEEEEcccccccCCCc--eEEEEEchHH
Confidence 9999984 77799999999999999999875321 122222 345688999999 667446 8999999999
Q ss_pred HHHHHHH----------------------hhccccCCchHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHhhhC-C
Q 013883 333 TWGVRQA----------------------HSFLTFATSTPMQWAATAALRAPET-YYEELKRDYSAKKAILVEGLNAV-G 388 (434)
Q Consensus 333 ~~~l~~~----------------------~~~~~~~~~~~~q~a~~~~L~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g 388 (434)
++.+... .+....+++.....++.++++-.++ .++++.++.++..+++.+.|+++ +
T Consensus 242 l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~ 321 (405)
T COG0520 242 LEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPG 321 (405)
T ss_pred HhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8776211 1111223333344444455554322 24566677778888899999887 6
Q ss_pred CEeecC----CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 389 FKVFPS----SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 389 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+.++.+ .++.+.| .+. +. ...+++..|-+ +||.++-|..+
T Consensus 322 v~i~g~~~~~r~~~vsF-~v~--~~-~~~dv~~~L~~-~gI~vr~g~~c 365 (405)
T COG0520 322 VEIYGPPDADRGGIVSF-NVK--GI-HPHDVATLLDE-KGIAVRAGHHC 365 (405)
T ss_pred eEEecCCcccCceEEEE-EeC--CC-CHHHHHHHHHh-CCeEEEecccc
Confidence 888754 3554444 332 22 46788887755 58999998654
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-21 Score=190.41 Aligned_cols=210 Identities=20% Similarity=0.248 Sum_probs=156.0
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhH----HHHHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSY----EATLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~----~~~~~~~G~~~~~v~~ 223 (434)
..+|++.++++++ .+ ..++++++++++.+++.+++++||+|+++.|.|... ...+...|++++.++.
T Consensus 67 ~~~le~~lA~l~g--------~~-~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 137 (403)
T PRK07503 67 LALLEQRMASLEG--------GE-AAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDL 137 (403)
T ss_pred HHHHHHHHHHHhC--------CC-cEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCC
Confidence 5678888888776 23 345555668899999999999999999999988753 3445678999988876
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
+ |++.+++++++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|...... . .+ . .
T Consensus 138 ~------d~~~l~~~i~~~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~~-~--~l-~----~ 200 (403)
T PRK07503 138 T------DPAALKAAISDKTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYLQ-R--PL-E----L 200 (403)
T ss_pred C------CHHHHHHhcCccCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC-C--ch-h----h
Confidence 4 689999999999999999999999999885 677899999999999999999864321 1 11 1 1
Q ss_pred CceEEEccCChhhcccc-ceeeeEEeChhhHHHHHHH--hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQA--HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAIL 380 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l 380 (434)
+..+++.|++|.++.+| .|.|+++.+++++++++.. +.......+.+.++.+...|+. +....++..++...+
T Consensus 201 g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~t----l~~r~~~~~~na~~~ 276 (403)
T PRK07503 201 GADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKT----LALRMDRHCASAQAV 276 (403)
T ss_pred CCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcch----HHHHHHHHHHHHHHH
Confidence 33488999999998655 7889999889888887633 4333455566655555444443 344444455666777
Q ss_pred HHHhhhC
Q 013883 381 VEGLNAV 387 (434)
Q Consensus 381 ~~~L~~~ 387 (434)
.+.|++.
T Consensus 277 a~~L~~~ 283 (403)
T PRK07503 277 AEWLARH 283 (403)
T ss_pred HHHHHhC
Confidence 7777664
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=187.33 Aligned_cols=216 Identities=14% Similarity=0.144 Sum_probs=167.4
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHH----HcCC
Q 013883 141 QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLS----MAGA 216 (434)
Q Consensus 141 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~G~ 216 (434)
+|+.+ ...+|+++++++.+ .+ .+++++|+++++..++.+++++||+|++++|.|++....+. ..|.
T Consensus 48 R~~~p-t~~~L~~~lA~l~g--------~~-~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi 117 (386)
T PRK08045 48 RRGNP-TRDVVQRALAELEG--------GA-GAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY 117 (386)
T ss_pred CCCCc-cHHHHHHHHHHHhC--------CC-eEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCe
Confidence 44443 34678888888765 34 69999999999999999999999999999999997444333 2344
Q ss_pred EEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccc
Q 013883 217 KIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISI 296 (434)
Q Consensus 217 ~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~ 296 (434)
++..++ ..|++.+++++++++++|++++|+||||.+++ +++|.++|+++|+++|+|++|...... .++
T Consensus 118 ~v~~vd------~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~~~~---~pl 185 (386)
T PRK08045 118 RVLFVD------QGDEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSPALQ---NPL 185 (386)
T ss_pred EEEEeC------CCCHHHHHHhcccCCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccC---Cch
Confidence 555542 24899999999989999999999999999996 567888899999999999999765321 112
Q ss_pred cCCCCCCCceEEEccCChhhc-cccceeeeEEe-ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHH
Q 013883 297 ASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIA-PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYS 374 (434)
Q Consensus 297 ~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~ 374 (434)
.+ ...+++.|++|.++ ..+.+.|++++ ++++++.++..+.....+.+++.++.+...|+. +....++..
T Consensus 186 -~~----gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~t----l~~R~~~~~ 256 (386)
T PRK08045 186 -AL----GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT----LVPRMELAQ 256 (386)
T ss_pred -hh----CCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcc----HHHHHHHHH
Confidence 11 22388999999995 55677899887 577888887777777778888888888888876 555667778
Q ss_pred HHHHHHHHHhhhC
Q 013883 375 AKKAILVEGLNAV 387 (434)
Q Consensus 375 ~~~~~l~~~L~~~ 387 (434)
+++..+.+.|++.
T Consensus 257 ~na~~la~~L~~~ 269 (386)
T PRK08045 257 RNAQAIVKYLQTQ 269 (386)
T ss_pred HHHHHHHHHHHcC
Confidence 8888888888765
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=188.17 Aligned_cols=210 Identities=17% Similarity=0.194 Sum_probs=158.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCc----hhHHHHHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFY----DSYEATLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y----~~~~~~~~~~G~~~~~v~~ 223 (434)
..+|++.++++.+ .+ +.+++++++.++..++.+++++||+|+++...| ..+...+...|++++.++.
T Consensus 72 ~~~le~~lA~l~g--------~~-~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~ 142 (403)
T PRK07810 72 VSMFEERLRLIEG--------AE-ACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDG 142 (403)
T ss_pred HHHHHHHHHHHhC--------CC-cEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECC
Confidence 5678888888775 33 567777778999989999999999999887544 4556667788999998864
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
. |++.+++++++++++|++++|+||||.+. ++++|+++|+++|+++|+|++|....+.. ++ . .
T Consensus 143 ~------d~~~l~~ai~~~tklV~~esp~Nptg~v~---dl~~I~~la~~~g~~vivD~a~a~~~~~~---~~-~----~ 205 (403)
T PRK07810 143 E------DLSQWEEALSVPTQAVFFETPSNPMQSLV---DIAAVSELAHAAGAKVVLDNVFATPLLQR---GL-P----L 205 (403)
T ss_pred C------CHHHHHHhcCcCceEEEEECCCCCCCeec---CHHHHHHHHHHcCCEEEEECCCCccccCC---hh-h----c
Confidence 3 88999999999999999999999999988 47779999999999999999998644321 11 1 1
Q ss_pred CceEEEccCChhhcccccee-eeEEeChhhHH-HHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSLTGWKI-GWAIAPPHLTW-GVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILV 381 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G~R~-G~~~~~~~~~~-~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~ 381 (434)
+..+++.|++|.++..|.++ |+++++++.+. .++..........++..++.+...|+. +....++..++...+.
T Consensus 206 gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~t----l~~R~~~~~~~a~~~a 281 (403)
T PRK07810 206 GADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLET----LALRVRHSNASALRIA 281 (403)
T ss_pred CCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCc----HHHHHHHHHHHHHHHH
Confidence 34588999999998788887 88888877665 455544444556677777776666664 3444555566666666
Q ss_pred HHhhhC
Q 013883 382 EGLNAV 387 (434)
Q Consensus 382 ~~L~~~ 387 (434)
+.|++.
T Consensus 282 ~~L~~~ 287 (403)
T PRK07810 282 EFLEGH 287 (403)
T ss_pred HHHhcC
Confidence 777764
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=185.35 Aligned_cols=212 Identities=20% Similarity=0.218 Sum_probs=164.1
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH----HHHcCCEEEEEE
Q 013883 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT----LSMAGAKIKCIT 222 (434)
Q Consensus 147 G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~ 222 (434)
-..+|++.++++.+ .+ ..++++++++|+..++.+++++||+|+++.+.|...... +...|+++..++
T Consensus 41 ~~~~le~~la~l~g--------~~-~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 111 (369)
T cd00614 41 TVDALEKKLAALEG--------GE-AALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVD 111 (369)
T ss_pred hHHHHHHHHHHHHC--------CC-CEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeC
Confidence 35677888887765 23 466677779999999999999999999999999886543 456788888876
Q ss_pred cCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCC
Q 013883 223 LRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM 302 (434)
Q Consensus 223 ~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~ 302 (434)
.+ |++.+++++++++++|++.+|+||+|.+.+ +++|+++|+++|+++|+|++|....+. . . + .
T Consensus 112 ~~------d~~~l~~~i~~~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~-~--~---~--~ 174 (369)
T cd00614 112 PD------DPEALEAAIKPETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQ-R--P---L--E 174 (369)
T ss_pred CC------CHHHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcC-C--h---h--h
Confidence 54 589999999889999999999999999985 677999999999999999999764431 1 1 1 1
Q ss_pred CCceEEEccCChhhcccc-ceeeeEEeCh-hhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 013883 303 YERTVTMNSLGKTFSLTG-WKIGWAIAPP-HLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAIL 380 (434)
Q Consensus 303 ~~~~i~i~S~SK~~g~~G-~R~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l 380 (434)
.+..+++.|++|.++.+| .+.||+++++ ++++.++..+.....+.++..++++...|+. +....++..++...+
T Consensus 175 ~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~t----l~~r~~~~~~na~~l 250 (369)
T cd00614 175 LGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKT----LPLRMERHSENALKV 250 (369)
T ss_pred hCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCC----HHHHHHHHHHHHHHH
Confidence 234588999999997555 7899999987 8888888776655566666666655555543 344566677788888
Q ss_pred HHHhhhCC
Q 013883 381 VEGLNAVG 388 (434)
Q Consensus 381 ~~~L~~~g 388 (434)
.+.|++.+
T Consensus 251 a~~L~~~~ 258 (369)
T cd00614 251 AEFLEKHP 258 (369)
T ss_pred HHHHHcCC
Confidence 88888764
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-20 Score=185.70 Aligned_cols=296 Identities=15% Similarity=0.174 Sum_probs=181.1
Q ss_pred cCCeeEeCCC-CCCCCCcHHHHHHHHHHHHcCC-CCCCCC--CCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 108 KHGAINLGQG-FPNFDGPDFVKDAAIQAIRDGK-NQYARG--HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 108 ~~~~i~l~~g-~p~~~~~~~v~~~~~~~~~~~~-~~Y~~~--~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
+...+||+.. +.++..+|.+.+++.+++.+.. ..+... ....+..+.+++.+.+..+. + .+++++| +++.
T Consensus 45 g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~----~-~~~~~sG-~~a~ 118 (402)
T PRK07505 45 GHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA----S-VLTFTSC-SAAH 118 (402)
T ss_pred CceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC----C-EEEECCh-HHHH
Confidence 3457899653 5555668999999999887521 111111 11233444444444444432 3 5666666 5677
Q ss_pred HHHHHHcc----CCCC-eEEEcCCCchhHH---HHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCc
Q 013883 184 AATILGLI----NPGD-EVILFAPFYDSYE---ATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPT 255 (434)
Q Consensus 184 ~~~~~~l~----~~gd-~Vlv~~p~y~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPT 255 (434)
..++..+. .+|+ .|++.+..|++.. ......+.+++.+|+. |++.++++++++++++++++|+|||
T Consensus 119 ~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~~------d~~~l~~~~~~~~~~~vl~~p~~~~ 192 (402)
T PRK07505 119 LGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDHN------DLDALEDICKTNKTVAYVADGVYSM 192 (402)
T ss_pred HHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCCC------CHHHHHHHHhcCCCEEEEEeccccc
Confidence 66664432 2233 3666666555432 1122235677777653 7899999988788999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC--CCccccCCCC-CCCceEEEccCChhhccccceeeeEEe-Chh
Q 013883 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM--DHISIASLPG-MYERTVTMNSLGKTFSLTGWKIGWAIA-PPH 331 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~--~~~~~~~~~~-~~~~~i~i~S~SK~~g~~G~R~G~~~~-~~~ 331 (434)
|.+.+ +++|.++|++|++++|+||+|....++. .......+.. .+++++++.||||.+|.+| ||+++ +++
T Consensus 193 G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~G---g~~~~~~~~ 266 (402)
T PRK07505 193 GGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASG---GVIMLGDAE 266 (402)
T ss_pred CCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhccC---eEEEeCCHH
Confidence 99987 5668888999999999999986544432 2222222332 4678999999999999766 88764 778
Q ss_pred hHHHHHHHhhccccC--CchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeE--EEeeecCC
Q 013883 332 LTWGVRQAHSFLTFA--TSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTY--FVVVDHTP 406 (434)
Q Consensus 332 ~~~~l~~~~~~~~~~--~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~--~~~~~~~~ 406 (434)
+++.++......+++ ++.++..++.++|+. .++++.+.++.++++.+.+.+.+... ..+.+ +.++.+..
T Consensus 267 ~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~g~~~~i~~~~~~~ 340 (402)
T PRK07505 267 QIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPTE------QSGSFLPIRLIYIGD 340 (402)
T ss_pred HHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc------CCCCCCCEEEEEeCC
Confidence 888887755544443 344566666666652 23344455566666655544332211 12222 22332211
Q ss_pred CCCCCHHHHHHHHHHhcCeEEECC
Q 013883 407 FGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 407 ~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
.....+++++|+++ ||.+.|+
T Consensus 341 --~~~~~~~~~~l~~~-Gi~v~~~ 361 (402)
T PRK07505 341 --EDTAIKAAKQLLDR-GFYTSPV 361 (402)
T ss_pred --HHHHHHHHHHHHHC-CCeEeee
Confidence 11256788888755 9999986
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-20 Score=186.21 Aligned_cols=293 Identities=16% Similarity=0.145 Sum_probs=189.0
Q ss_pred eEeCCCCCCCCCcHHHHHHHHHHHH--cCCCC-C--CCC------CCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH
Q 013883 112 INLGQGFPNFDGPDFVKDAAIQAIR--DGKNQ-Y--ARG------HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180 (434)
Q Consensus 112 i~l~~g~p~~~~~~~v~~~~~~~~~--~~~~~-Y--~~~------~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~ 180 (434)
|-|..+... +.++.+.+++.+.+. ..... . ... ..+.++|+.++++++ .+++ +|++++|++
T Consensus 5 iyld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g------~~~~-~v~~~~g~t 76 (404)
T PRK14012 5 IYLDYSATT-PVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIG------ADPR-EIVFTSGAT 76 (404)
T ss_pred EEecCcCCC-CCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcC------cCcC-eEEEeCCHH
Confidence 455554443 456678888877765 21100 0 010 123455666666664 4566 799999999
Q ss_pred HHHHHHHHHc----cCCCCeEEEcCCCchhHHHHH---HHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCC
Q 013883 181 EAIAATILGL----INPGDEVILFAPFYDSYEATL---SMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHN 253 (434)
Q Consensus 181 ~ai~~~~~~l----~~~gd~Vlv~~p~y~~~~~~~---~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~N 253 (434)
+++.+++.++ .++||+|++.++.|+.....+ ...|++++.++.++ ++.+|++.+++++++++++|++++++|
T Consensus 77 ~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~-~g~~d~~~l~~~i~~~t~lv~~~~~~n 155 (404)
T PRK14012 77 ESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQS-NGIIDLEKLEAAMRDDTILVSIMHVNN 155 (404)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCC-CCcCCHHHHHHhcCCCCEEEEEECcCC
Confidence 9999888766 378999999999998875544 34699999998874 678899999999999999999999999
Q ss_pred CcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhH
Q 013883 254 PTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT 333 (434)
Q Consensus 254 PTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~ 333 (434)
|||.+.+ +++|.++|+++|+++|+|+++..... ...+.. .+-.+++.|+.|.+| ++ ++|+++++++..
T Consensus 156 ~tG~~~~---~~~I~~la~~~g~~vivD~a~~~g~~---~~~~~~----~~~D~~~~s~~K~~g-p~-g~G~l~~~~~~~ 223 (404)
T PRK14012 156 EIGVIQD---IAAIGEICRERGIIFHVDAAQSVGKV---PIDLSK----LKVDLMSFSAHKIYG-PK-GIGALYVRRKPR 223 (404)
T ss_pred Cccchhh---HHHHHHHHHHcCCEEEEEcchhcCCc---ccCccc----CCCCEEEEehhhccC-CC-ceEEEEEecCCC
Confidence 9999885 67799999999999999999875221 112221 123467779999887 43 589998876643
Q ss_pred HHHHHH-h------hccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecC-----CeeEEE
Q 013883 334 WGVRQA-H------SFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPS-----SGTYFV 400 (434)
Q Consensus 334 ~~l~~~-~------~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-----~~~~~~ 400 (434)
..+... . +....+.+.....+..+++.......+...++.++.++.+.+.|+++ ++.+..+ ...+++
T Consensus 224 ~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~ 303 (404)
T PRK14012 224 VRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNV 303 (404)
T ss_pred CCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEE
Confidence 222111 0 01112223333333334444322344556677788888888888775 4554321 123344
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 401 VVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
++.+. +..++...| .++.+..|..|
T Consensus 304 ~~~~~-----~~~~~~~~l---~~~~i~~g~~~ 328 (404)
T PRK14012 304 SFNYV-----EGESLIMAL---KDLAVSSGSAC 328 (404)
T ss_pred EEeCc-----CHHHHHHhC---CCeEEEchhhh
Confidence 44432 234565554 27777777544
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-22 Score=197.34 Aligned_cols=239 Identities=18% Similarity=0.254 Sum_probs=169.9
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhH----HHHHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSY----EATLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~----~~~~~~~G~~~~~v~~ 223 (434)
..+|++.++++++ .+ ..++++++++++..++.+++++||+|+++.+.|++. ...+...|++++.++.
T Consensus 59 ~~~le~~lA~l~g--------~~-~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~ 129 (418)
T TIGR01326 59 TDVLEQRIAALEG--------GV-AALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDP 129 (418)
T ss_pred HHHHHHHHHHHhC--------CC-eEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECC
Confidence 4577888888765 23 578888889999999999999999999999998764 3446678999988874
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
+ |++.+++++++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..... ...+ ..
T Consensus 130 ~------d~~~l~~~l~~~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~~------~~~l--~~ 192 (418)
T TIGR01326 130 D------DPEEFEKAIDENTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPYL------CRPI--DH 192 (418)
T ss_pred C------CHHHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchhhc------CCch--hc
Confidence 3 789999999999999999999999999885 67799999999999999999974311 1111 12
Q ss_pred CceEEEccCChhhccccceeeeEEeCh-hhHHHHHHHhhccccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSLTGWKIGWAIAPP-HLTWGVRQAHSFLTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILV 381 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G~R~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~ 381 (434)
+.++++.|++|.++.+|+|+||+++++ .+.... .....++.+.+.|.++...+... +.++ ++ .+ .
T Consensus 193 g~Divv~S~sK~l~g~G~~lGg~v~~~~~~~~~~---~~~~~~~~~~~~q~a~~~~~~~~~~~~~------~~-~~---~ 259 (418)
T TIGR01326 193 GADIVVHSATKYIGGHGTAIGGVIVDGGKFDWAN---GRFPLFTTPDPSYHGLVFTETFGNPAFI------VK-AR---V 259 (418)
T ss_pred CCeEEEECccccccCCccceEEEEEecccccccc---cccccccCCCCccccchhhhhhchhhHH------HH-HH---H
Confidence 467999999999998999999999965 333222 22456677777777776665321 1111 11 11 2
Q ss_pred HHhhhCCCEeecCCeeEEEeeecCCCC------CCCHHHHHHHHHHhcCeE
Q 013883 382 EGLNAVGFKVFPSSGTYFVVVDHTPFG------HETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 382 ~~L~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Ll~~~GV~ 426 (434)
+.++..|+.+ .|.+.++++.++.... ..++.+++++|.++.+|.
T Consensus 260 ~~~~~~G~~~-~p~~a~~~~~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~ 309 (418)
T TIGR01326 260 QLLRDLGAAL-SPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVA 309 (418)
T ss_pred HHHHhcCCCC-CHHHHHHHHCCcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3344556655 4566666665543321 124566777777666654
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=187.31 Aligned_cols=210 Identities=16% Similarity=0.249 Sum_probs=153.1
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH----HHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT----LSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~ 223 (434)
..+|+++++++++ . + ..+++++++.++..++.+++++||+|+++.|.|..+... +...|++++.++
T Consensus 67 ~~~Le~~lA~l~G------~--~-~~~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd- 136 (398)
T PRK07504 67 VDMFEKRMCALEG------A--E-DARATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVD- 136 (398)
T ss_pred HHHHHHHHHHHhC------C--C-eeeEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEEC-
Confidence 5688888988876 2 2 234466778888888888899999999999999986544 345788888774
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
.+|++.+++++++++++|++++|+||||.+++ +++|.++|+++|+++|+|++|....+. . . .. .
T Consensus 137 -----~~d~e~l~~ai~~~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~~~~-~--~-~~----~ 200 (398)
T PRK07504 137 -----GLDLDNWEKAVRPNTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATPLFQ-K--P-LE----L 200 (398)
T ss_pred -----CCCHHHHHHhcCcCceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCccccccC-C--c-hh----h
Confidence 25899999999999999999999999999996 677888899999999999999865432 1 1 11 2
Q ss_pred CceEEEccCChhhccccceee-eEEeChhhHHH-HHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSLTGWKIG-WAIAPPHLTWG-VRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILV 381 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G~R~G-~~~~~~~~~~~-l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~ 381 (434)
+..+++.|++|.++.+|+|+| +++++++.+.+ ++..........+...++.+...|+. +....++..++...+.
T Consensus 201 gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~t----l~~R~~~~~~na~~la 276 (398)
T PRK07504 201 GAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLET----LPVRVRQQTESAAAIA 276 (398)
T ss_pred CCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccch----HHHHHHHHHHHHHHHH
Confidence 345889999999988999985 66677776643 44333333344444444444444443 3444555567777777
Q ss_pred HHhhhC
Q 013883 382 EGLNAV 387 (434)
Q Consensus 382 ~~L~~~ 387 (434)
+.|++.
T Consensus 277 ~~L~~~ 282 (398)
T PRK07504 277 DFLAGH 282 (398)
T ss_pred HHHHcC
Confidence 777764
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-20 Score=184.61 Aligned_cols=260 Identities=17% Similarity=0.178 Sum_probs=181.8
Q ss_pred eEeCCCCCCCCCcHHHHHHHHHHHHcCC-CCC--CCC------CCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 112 INLGQGFPNFDGPDFVKDAAIQAIRDGK-NQY--ARG------HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 112 i~l~~g~p~~~~~~~v~~~~~~~~~~~~-~~Y--~~~------~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+.|..+.+. +.++.+++++.+.+.... ..+ ... ..+.++|+.++++++ .+++ +|++++|++++
T Consensus 5 ~yld~aa~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~-~v~~~~g~t~a 76 (402)
T TIGR02006 5 IYLDYAATT-PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIG------ADSR-EIVFTSGATES 76 (402)
T ss_pred EEeeCCcCC-CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhC------CCCC-eEEEeCCHHHH
Confidence 455555444 456778888877764321 111 110 123445666666654 4566 89999999999
Q ss_pred HHHHHHHc----cCCCCeEEEcCCCchhHHHHH---HHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCc
Q 013883 183 IAATILGL----INPGDEVILFAPFYDSYEATL---SMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPT 255 (434)
Q Consensus 183 i~~~~~~l----~~~gd~Vlv~~p~y~~~~~~~---~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPT 255 (434)
+..++..+ .++||+|++..+.|+.+...+ +..|++++.+++++ ++.+|++.++++++++++++++++++|||
T Consensus 77 ~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~~~~~lv~v~~~~n~t 155 (402)
T TIGR02006 77 NNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKS-NGLIDLEELKAAIRDDTILVSIMHVNNEI 155 (402)
T ss_pred HHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCC-CCcCCHHHHHHhcCCCCEEEEEECCCcCc
Confidence 99887765 368999999999998865543 45699999999874 67799999999999899999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHH
Q 013883 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG 335 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~ 335 (434)
|...+ +++|.++|+++|+++++|+++..... ...+.. ..-.+++.|..|.+|.+| +|+++.+++....
T Consensus 156 G~~~~---~~~I~~l~~~~g~~livD~a~a~g~~---~~~~~~----~~~D~~~~s~~K~~gp~G--~G~l~~~~~~~~~ 223 (402)
T TIGR02006 156 GVIQD---IAAIGEICRERKVFFHVDAAQSVGKI---PINVNE----LKVDLMSISGHKIYGPKG--IGALYVRRKPRVR 223 (402)
T ss_pred eeccc---HHHHHHHHHHcCCEEEEEcchhcCCc---ccCccc----cCCCEEEEehhhhcCCCc--eEEEEEccCCCCC
Confidence 99985 66789999999999999999875321 111111 233477788889887446 8998887654333
Q ss_pred HHHHh-------hccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEee
Q 013883 336 VRQAH-------SFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVF 392 (434)
Q Consensus 336 l~~~~-------~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 392 (434)
+.... +....+++.....++..+|+...++++...+++++.++.+++.|+++ ++.+.
T Consensus 224 ~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~ 288 (402)
T TIGR02006 224 LEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSIEEVYLN 288 (402)
T ss_pred CCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 22111 12223455555556656666544467777888899999999999875 55554
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=185.01 Aligned_cols=305 Identities=16% Similarity=0.108 Sum_probs=192.8
Q ss_pred CCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...||+..|.- .+. .+|.+.+++.+++....+ +... ...+....+++.+.+..+ .+ .+++++++++|++.
T Consensus 15 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~-~~~~~~~~la~~l~~~~~----~~-~v~f~~sGseA~e~ 87 (382)
T PLN00144 15 KEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAH-VSNV-YHTIPQVELAKRLVASSF----AD-RVFFCNSGTEANEA 87 (382)
T ss_pred CEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCC-cccc-ccCHHHHHHHHHHHhcCC----CC-eEEEeCCcHHHHHH
Confidence 35688766631 122 367788888888876322 1111 113445566666654322 34 79999999999999
Q ss_pred HHHHcc---C------C------CCeEEEcCCCchhHHHHHHHcCCEE-EEEEcCC--CC----CCCCHHHHHhhccc-C
Q 013883 186 TILGLI---N------P------GDEVILFAPFYDSYEATLSMAGAKI-KCITLRP--PD----FAIPIEELKSTISK-N 242 (434)
Q Consensus 186 ~~~~l~---~------~------gd~Vlv~~p~y~~~~~~~~~~G~~~-~~v~~~~--~~----~~~d~~~l~~~i~~-~ 242 (434)
+++... . + ..+|+.....|++............ ..-++.+ .+ ...|++.+++.+.. +
T Consensus 88 AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 167 (382)
T PLN00144 88 AIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKGK 167 (382)
T ss_pred HHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCCCC
Confidence 887542 1 0 2468888888988665443322211 1001100 00 01268999988864 4
Q ss_pred CcEEEecCCCCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccc
Q 013883 243 TRAILMNTPHNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGW 321 (434)
Q Consensus 243 ~~~i~~~~p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~ 321 (434)
+++|++...+||.|+.. +.+.+++|.++|++||+++|+||+|.+|.+.+.........-.+| +.+|||.++ +|+
T Consensus 168 ~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD----i~t~sK~l~-~G~ 242 (382)
T PLN00144 168 TAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD----IMTLAKPLA-GGL 242 (382)
T ss_pred eEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC----EEEeccccc-CCc
Confidence 56676655589955532 445599999999999999999999999877665433212222344 889999999 999
Q ss_pred eeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEE
Q 013883 322 KIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYF 399 (434)
Q Consensus 322 R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 399 (434)
|+||+++++++.+.+.......+++.+++.+.++.+.|+-- .++.+.++..-+..++.+.+.+.+.+........|++
T Consensus 243 pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~vrg~G~~ 322 (382)
T PLN00144 243 PIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPHVKEVRGVGLL 322 (382)
T ss_pred ceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhCCCceeeecCceE
Confidence 99999999999887765455568888999999888555431 2222322222222344455555544322222237888
Q ss_pred EeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 400 VVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
+|+.+.. +...++..+++ .||.+.|+
T Consensus 323 ~~l~l~~----~~~~~~~~~~~-~Gv~i~~~ 348 (382)
T PLN00144 323 VGIQLDV----PAGPLVDACRD-SGLLVLTA 348 (382)
T ss_pred EEEEecC----ccHHHHHHHHH-CCeEEeec
Confidence 9988721 34678887765 59999986
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-20 Score=183.32 Aligned_cols=210 Identities=20% Similarity=0.244 Sum_probs=159.2
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchh----HHHHHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDS----YEATLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~----~~~~~~~~G~~~~~v~~ 223 (434)
..+|++.++++++ .+ .+++++++++++..++.+++++||+|+++.+.|.. +...+...|++++.++.
T Consensus 56 ~~~le~~la~l~g--------~~-~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~ 126 (380)
T TIGR01325 56 VAAFEERIAALEG--------AE-RAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDP 126 (380)
T ss_pred HHHHHHHHHHHhC--------CC-cEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECC
Confidence 5678888888765 24 57888999999999999999999999999988865 33456778999988876
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
+ |++.+++++++++++|++++|+||+|.+. ++++|.++|+++|+++|+|++|....+. . ++ . .
T Consensus 127 ~------d~~~l~~~i~~~tklV~le~p~np~g~~~---dl~~I~~la~~~gi~livD~a~~~~~~~-~--pl-~----~ 189 (380)
T TIGR01325 127 T------DLNAWEAAVKPNTKLVFVETPSNPLGELV---DIAALAELAHAIGALLVVDNVFATPVLQ-Q--PL-K----L 189 (380)
T ss_pred C------CHHHHHHhcCCCceEEEEECCCCCCCeee---CHHHHHHHHHHcCCEEEEECCCcccccC-C--ch-h----h
Confidence 4 68999999988999999999999999988 4677899999999999999999764322 1 11 1 1
Q ss_pred CceEEEccCChhhcccccee-eeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSLTGWKI-GWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVE 382 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G~R~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~ 382 (434)
+..+++.|++|.++.+|.++ |++++++++++.++..........++... ..++.. .+.+....++..+++..+.+
T Consensus 190 g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a---~~~l~~-l~tl~~r~~~~~~~a~~la~ 265 (380)
T TIGR01325 190 GADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSPFNA---WVLLKG-LETLSLRMQKQFDSALAIAE 265 (380)
T ss_pred CCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHH---HHHHhc-cCcHHHHHHHHHHHHHHHHH
Confidence 33588889999998677776 78888988888877665443333344433 333333 22345556667778888888
Q ss_pred HhhhC
Q 013883 383 GLNAV 387 (434)
Q Consensus 383 ~L~~~ 387 (434)
.|++.
T Consensus 266 ~L~~~ 270 (380)
T TIGR01325 266 WLQAQ 270 (380)
T ss_pred HHHcC
Confidence 88875
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=185.02 Aligned_cols=209 Identities=16% Similarity=0.179 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchh----HHHHHHHcCCEEEEEEcC
Q 013883 149 PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDS----YEATLSMAGAKIKCITLR 224 (434)
Q Consensus 149 ~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~----~~~~~~~~G~~~~~v~~~ 224 (434)
.+|++.++++.+ . ++ .+++++| ++++.+++.+++++||.|+++.|.|.. +...+...|.+++.++..
T Consensus 63 ~~Le~~lA~l~g----~---~~-~v~~~sG-~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~ 133 (405)
T PRK08776 63 DLLGEALAELEG----G---AG-GVITATG-MGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLT 133 (405)
T ss_pred HHHHHHHHHHhC----C---Cc-eEEEcCH-HHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCC
Confidence 456666666544 2 33 5655555 799999999999999999999999997 444455678888877643
Q ss_pred CCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCC
Q 013883 225 PPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYE 304 (434)
Q Consensus 225 ~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~ 304 (434)
|++.+++++++++++|++++|+||||.+. ++++|+++|+++|+++|+|++|..... ..++ .+ +
T Consensus 134 ------d~~~l~~~i~~~tklV~l~~P~NPtG~v~---dl~~I~~la~~~gi~vIvD~a~a~~~~---~~pl-~~----g 196 (405)
T PRK08776 134 ------DPRSLADALAQSPKLVLIETPSNPLLRIT---DLRFVIEAAHKVGALTVVDNTFLSPAL---QKPL-EF----G 196 (405)
T ss_pred ------CHHHHHHhcCcCCeEEEEECCCCCCCccC---CHHHHHHHHHHcCCEEEEECCCccccc---CCcc-cc----c
Confidence 78999999988999999999999999986 578899999999999999999975321 1122 11 2
Q ss_pred ceEEEccCChhhccc-cceeeeEEe-ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 013883 305 RTVTMNSLGKTFSLT-GWKIGWAIA-PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVE 382 (434)
Q Consensus 305 ~~i~i~S~SK~~g~~-G~R~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~ 382 (434)
..+++.|.+|.++-+ +...|++++ ++++.+++...+.....+.+++.++++...|+ +++...++..++...+.+
T Consensus 197 aDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~----tl~~r~~~~~~na~~la~ 272 (405)
T PRK08776 197 ADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLR----TLDARLRVHQENADAIAA 272 (405)
T ss_pred CCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhC----cHHHHHHHHHHHHHHHHH
Confidence 348899999999644 467898877 46777777766655556666666666665444 567777788888888888
Q ss_pred HhhhC
Q 013883 383 GLNAV 387 (434)
Q Consensus 383 ~L~~~ 387 (434)
.|++.
T Consensus 273 ~L~~~ 277 (405)
T PRK08776 273 LLDGH 277 (405)
T ss_pred HHHcC
Confidence 88764
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=188.38 Aligned_cols=303 Identities=18% Similarity=0.153 Sum_probs=199.1
Q ss_pred cCCeeEeCCCCCCC---CCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFPNF---DGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p~~---~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...+||..|++.. -.+|.+.+++.+++.+....|.+..+..+|.+.+++.+ . ..+ .+++++++++|+.
T Consensus 49 G~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~la~~L~~~~----~---~~~-~v~~~~sGseA~e 120 (426)
T PRK00062 49 GNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGLSFGAPTELEVELAELVIELV----P---SIE-MVRMVNSGTEATM 120 (426)
T ss_pred CCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhC----C---CCC-EEEEecCHHHHHH
Confidence 44689998886543 26788999999998875443444434445555554443 1 244 7999999999999
Q ss_pred HHHHHccC--CCCeEEEcCCCchhHHHHHHHc-CCE------------EE-----EEEcCCCCCCCCHHHHHhhccc---
Q 013883 185 ATILGLIN--PGDEVILFAPFYDSYEATLSMA-GAK------------IK-----CITLRPPDFAIPIEELKSTISK--- 241 (434)
Q Consensus 185 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~-G~~------------~~-----~v~~~~~~~~~d~~~l~~~i~~--- 241 (434)
.+++.... .+++|+..++.|+++...+... |.. .. .+.+. ..|++.+++.+..
T Consensus 121 ~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~i~~~~~ 196 (426)
T PRK00062 121 SAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAP----YNDLEAVEELFEEYGD 196 (426)
T ss_pred HHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcC----CCCHHHHHHHHHhCCC
Confidence 99887543 3678999999999986443332 100 00 01111 1278888887753
Q ss_pred CCcEEEecCCCCCcccCCC-HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccc
Q 013883 242 NTRAILMNTPHNPTGKMFT-REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTG 320 (434)
Q Consensus 242 ~~~~i~~~~p~NPTG~~~~-~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G 320 (434)
++.+|++......+|.+.+ .+.+++|.++|++||+++|+||+|.++..+ .......+...+| +.+|+|.++ .|
T Consensus 197 ~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g-~~~~~~~~~~~pD----i~~~gK~l~-~G 270 (426)
T PRK00062 197 EIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVA-LGGAQGYYGVTPD----LTTLGKIIG-GG 270 (426)
T ss_pred cEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccC-CccHHHHhCCCcc----hHhhhhHhh-CC
Confidence 5667777644555888775 778999999999999999999999988443 2222222221233 578999999 89
Q ss_pred ceeeeEEeChhhHHHHHHH---hhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEe-ecC
Q 013883 321 WKIGWAIAPPHLTWGVRQA---HSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKV-FPS 394 (434)
Q Consensus 321 ~R~G~~~~~~~~~~~l~~~---~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~ 394 (434)
+++|++++++++++.+... ....+++.+++.+.++.++|+.. ++.++++++.....++.|.+.+++.++.. ...
T Consensus 271 ~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg 350 (426)
T PRK00062 271 LPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNR 350 (426)
T ss_pred CcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 9999999999998877522 22346778888999988888742 23555556666666666666555667655 345
Q ss_pred CeeEEEeeecCCCCC--------CC---HHHHHHHHHHhcCeEEECC
Q 013883 395 SGTYFVVVDHTPFGH--------ET---DIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 395 ~~~~~~~~~~~~~~~--------~~---~~~~~~~Ll~~~GV~v~pG 430 (434)
.|.|+.+. +.+... .+ ...+...|++ +||.+.|.
T Consensus 351 ~G~~~~i~-l~~~~~~~~~~~~~~~~~~~~~i~~~l~~-~Gv~v~~~ 395 (426)
T PRK00062 351 VGSMFGLF-FTDEPVTNYADAKKSDTERFARFFHAMLD-EGVYLAPS 395 (426)
T ss_pred ecceEEEE-EecCCCcchhhhccccHHHHHHHHHHHHH-CCeEeecC
Confidence 66665432 211100 01 2467777765 59999885
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-20 Score=185.36 Aligned_cols=314 Identities=17% Similarity=0.125 Sum_probs=201.8
Q ss_pred CCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...+|+..|.- .+. .+|.+.+++.+++.+..+..... ...+....+++.+...... -..+ .+++++++++|++.
T Consensus 40 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~-~~~~~~~~la~~l~~~~p~-~~~~-~~~f~~sGseA~e~ 116 (421)
T PRK06777 40 REYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQI-VPYASYVTLAERINALAPI-DGPA-KTAFFTTGAEAVEN 116 (421)
T ss_pred CEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcccccccc-cCChHHHHHHHHHHHhCCC-CCCc-eEEEeCCcHHHHHH
Confidence 35788866632 122 36778889998887643211111 1123345566666544321 1124 68889999999999
Q ss_pred HHHHcc--CCCCeEEEcCCCchhHHHHHHHc-CCE-------------EEEEEcCCCCCC----CCHHHHHhhcc-----
Q 013883 186 TILGLI--NPGDEVILFAPFYDSYEATLSMA-GAK-------------IKCITLRPPDFA----IPIEELKSTIS----- 240 (434)
Q Consensus 186 ~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-G~~-------------~~~v~~~~~~~~----~d~~~l~~~i~----- 240 (434)
+++... ....+|+.....|++.......+ |.. +..+++.+...+ .+++.+++.+.
T Consensus 117 AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (421)
T PRK06777 117 AVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAP 196 (421)
T ss_pred HHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCC
Confidence 887553 23357888888888875544322 210 111222211111 13566777664
Q ss_pred cCCcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccc
Q 013883 241 KNTRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLT 319 (434)
Q Consensus 241 ~~~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 319 (434)
++..+|++...++..|+ +++.+.+++|.++|++||+++|+||+|.+|.+.+.......+...+| +.++||.++ +
T Consensus 197 ~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pD----iv~~sK~l~-~ 271 (421)
T PRK06777 197 DQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPD----LITMAKSLG-G 271 (421)
T ss_pred CceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCC----EEeeehhhc-C
Confidence 24566676655888886 57899999999999999999999999999877765444444432333 347999999 9
Q ss_pred cceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC----C-CEeecC
Q 013883 320 GWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV----G-FKVFPS 394 (434)
Q Consensus 320 G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~ 394 (434)
|+|+||+++++++++.+.......+++.+++.+.++.++|+..++ +++.++++++.+++++.|+++ + +..+.+
T Consensus 272 G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg 349 (421)
T PRK06777 272 GMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAE--EKLCQRALILGAHLVEVLEKAKASCPAIVDIRA 349 (421)
T ss_pred CCceEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEecC
Confidence 999999999999988776555556888999999999999975322 356667777777777777664 2 334577
Q ss_pred CeeEEEe-eecCCCCCCCHHHHHHHH---HHhcCeEEECCCCC
Q 013883 395 SGTYFVV-VDHTPFGHETDIAFCEYL---IKEVGVVAIPTSVF 433 (434)
Q Consensus 395 ~~~~~~~-~~~~~~~~~~~~~~~~~L---l~~~GV~v~pG~~F 433 (434)
.|.|+.+ +..+..+. ++.+++.++ +.+.||.+.|+..|
T Consensus 350 ~G~~~~i~~~~~~~~~-~~~~~~~~l~~~~~~~Gv~i~~~~~~ 391 (421)
T PRK06777 350 RGSMVAVEFNDPQTGK-PSPEFTRQYQRQALEEGLLLLSCGVH 391 (421)
T ss_pred ceEEEEEEEecCccCC-ccHHHHHHHHHHHHhCCeEEeecCCC
Confidence 8888754 33211111 223344433 23469999998654
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=188.84 Aligned_cols=304 Identities=14% Similarity=0.142 Sum_probs=191.1
Q ss_pred cCCeeEeCCCCCCCCC---cHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFPNFDG---PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~---~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...|||..|+-.... +|.+.+++.+++.+..... +. -..+....+++.+.+..+ .+ .+++++++++|++
T Consensus 74 G~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~-~~-~~~~~~~~la~~L~~~~~----~~-~~~f~~SGseA~e 146 (474)
T PLN02624 74 GKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSS-RA-FYNDKFPEFAEYLTSMFG----YD-MVLPMNTGAEGVE 146 (474)
T ss_pred CCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCcc-cc-cCCHHHHHHHHHHHhhcC----CC-eEEEeCChHHHHH
Confidence 3467888777544433 7889999999887632111 11 112223334444444333 24 6888999999999
Q ss_pred HHHHHccC---------CCC-eEEEcCCCchhHHHHHHHcCCE-------------EEEEEcCCCCCCCCHHHHHhhcc-
Q 013883 185 ATILGLIN---------PGD-EVILFAPFYDSYEATLSMAGAK-------------IKCITLRPPDFAIPIEELKSTIS- 240 (434)
Q Consensus 185 ~~~~~l~~---------~gd-~Vlv~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~d~~~l~~~i~- 240 (434)
.+++.... +++ .|+...-.|++..........+ +..+++ -|++.+++.++
T Consensus 147 ~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~ 220 (474)
T PLN02624 147 TAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF------GDLDALEKIFEE 220 (474)
T ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC------CCHHHHHHHHHh
Confidence 98874432 133 5777777787754332222111 122222 16888988885
Q ss_pred --cCCcEEEecCCCCCcccCCCHHH-HHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhc
Q 013883 241 --KNTRAILMNTPHNPTGKMFTREE-LNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFS 317 (434)
Q Consensus 241 --~~~~~i~~~~p~NPTG~~~~~e~-l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 317 (434)
.++++|++..++|++|.+++.++ +++|.++|++||+++|+||+|.+|.+.|...........+| +.++||.+|
T Consensus 221 ~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pD----iv~lsK~lg 296 (474)
T PLN02624 221 DGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPD----VVILGKALG 296 (474)
T ss_pred CCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCC----EEEeccccc
Confidence 35778889899999999887664 99999999999999999999998766554332211111122 444799999
Q ss_pred cccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC----C--CEe
Q 013883 318 LTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV----G--FKV 391 (434)
Q Consensus 318 ~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g--~~~ 391 (434)
.+++++|+++++++++..+.......+++.+++.+.++.++|+..++ .++.++..++.+.+++.|+++ . +..
T Consensus 297 gG~~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~--~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~ 374 (474)
T PLN02624 297 GGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQD--EKLAERSAKLGQELRDQLQKIQKQFPKLIKE 374 (474)
T ss_pred CCCCcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 66699999999998887765544445778888999999888875321 123334444445555544442 1 333
Q ss_pred ecCCeeEEEe-eecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 392 FPSSGTYFVV-VDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 392 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+.+.|.++.+ ++....+.....+++++|.+ +||++.|+.
T Consensus 375 vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e-~GV~v~p~~ 414 (474)
T PLN02624 375 VRGRGLLNAVVLNSPKLGPVSAYDVCLKLKE-RGLLAKPTH 414 (474)
T ss_pred EEeeEEEEEEEecCCCcChHHHHHHHHHHHh-CCeEEecCC
Confidence 4556665542 32211111234578887754 699999863
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-20 Score=183.15 Aligned_cols=210 Identities=16% Similarity=0.110 Sum_probs=154.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHH----HHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA----TLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~v~~ 223 (434)
..+|++.++++.+ .+ ++++++|+++|+.+++.+++++||+|++++|+|..+.. .+...|++++.++.
T Consensus 67 ~~~Le~~lA~l~g--------~~-~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~ 137 (394)
T PRK07050 67 SLALAQRLAEIEG--------GR-HALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDP 137 (394)
T ss_pred HHHHHHHHHHHhC--------CC-eEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECC
Confidence 4566777766654 45 79999999999999999999999999999999998664 45678999887753
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
. +.+.+++++++++++|++++|+||+|. ..++++|+++|+++|+++|+|++|....+. ..+ ..
T Consensus 138 ~------~~~~l~~~i~~~tklV~le~p~Np~~~---~~di~~I~~ia~~~gi~livD~a~a~~~~~------~~l--~~ 200 (394)
T PRK07050 138 L------IGAGIADLIQPNTRLIWLEAPGSVTME---VPDVPAITAAARARGVVTAIDNTYSAGLAF------KPF--EH 200 (394)
T ss_pred C------CHHHHHHhcCCCCeEEEEECCCCCCcc---HhhHHHHHHHHHHcCCEEEEECCccccccc------CHH--Hc
Confidence 3 457889999999999999999999974 558999999999999999999999763221 111 11
Q ss_pred CceEEEccCChhhc-cccceeeeEEe-ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFS-LTGWKIGWAIA-PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILV 381 (434)
Q Consensus 304 ~~~i~i~S~SK~~g-~~G~R~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~ 381 (434)
+..+++.|++|.++ ..+.+.|++++ ++++.++++..+.....+.++...+.+...|+. +....++..++...+.
T Consensus 201 GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~t----l~~Rl~~~~~~a~~la 276 (394)
T PRK07050 201 GVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPS----LQVRLAAHDRSALEVA 276 (394)
T ss_pred CCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCc----HHHHHHHHHHHHHHHH
Confidence 34588999999996 23446887776 577888887777655556666655544444443 2223444455555666
Q ss_pred HHhhhC
Q 013883 382 EGLNAV 387 (434)
Q Consensus 382 ~~L~~~ 387 (434)
+.|++.
T Consensus 277 ~~L~~~ 282 (394)
T PRK07050 277 EWLKAR 282 (394)
T ss_pred HHHHhC
Confidence 666654
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-20 Score=185.00 Aligned_cols=210 Identities=23% Similarity=0.257 Sum_probs=156.1
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhH----HHHHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSY----EATLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~----~~~~~~~G~~~~~v~~ 223 (434)
..+|++.++++++ .+ ..++++++++++.+++.+++++||+|+++.|.|... ...+...|++++.++.
T Consensus 61 ~~~le~~lA~l~g--------~~-~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~ 131 (391)
T TIGR01328 61 VSNLEGRIAFLEG--------TE-AAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINM 131 (391)
T ss_pred HHHHHHHHHHHhC--------CC-cEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECC
Confidence 4678999998886 33 466777778899999999999999999999987653 3445668999888876
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
+ |++.+++++++++++|++++|+||+|.+.+ +++|+++|+++|+++|+|++|...... . .+. .
T Consensus 132 ~------d~e~l~~~i~~~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~~~~-~--~~~-----~ 194 (391)
T TIGR01328 132 A------IPEEVKAHIKDNTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATPMLT-N--PVA-----L 194 (391)
T ss_pred C------CHHHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchhccC-C--chh-----c
Confidence 4 789999999999999999999999999885 667888999999999999999864332 1 111 1
Q ss_pred CceEEEccCChhhccccce-eeeEEeChhhHHHHHHHhhc--cccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSLTGWK-IGWAIAPPHLTWGVRQAHSF--LTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAIL 380 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G~R-~G~~~~~~~~~~~l~~~~~~--~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l 380 (434)
+..+++.|++|.+|.+|.+ .|+++++++++++++..... .....+....+.+...|+. +....++..++...+
T Consensus 195 g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~t----l~~r~~~~~~na~~l 270 (391)
T TIGR01328 195 GVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKT----LNIRMKRHSENAMKV 270 (391)
T ss_pred CCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCc----HHHHHHHHHHHHHHH
Confidence 2348889999999888876 57888889988888754322 2233444444444444443 334456666777777
Q ss_pred HHHhhhC
Q 013883 381 VEGLNAV 387 (434)
Q Consensus 381 ~~~L~~~ 387 (434)
.+.|++.
T Consensus 271 a~~L~~~ 277 (391)
T TIGR01328 271 AEYLKSH 277 (391)
T ss_pred HHHHHhC
Confidence 7877764
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-20 Score=183.73 Aligned_cols=212 Identities=14% Similarity=0.137 Sum_probs=154.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHH----HcCCEEEEE
Q 013883 146 HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLS----MAGAKIKCI 221 (434)
Q Consensus 146 ~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~G~~~~~v 221 (434)
....+|+++++++.+. +..+++ +++++|+.+++.+++++||+|++++|+|......+. ..|++++.+
T Consensus 61 p~~~~Le~~lA~~~g~--------~~~i~~-~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~ 131 (388)
T PRK07811 61 PTRTALEEQLAALEGG--------AYGRAF-SSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPV 131 (388)
T ss_pred ccHHHHHHHHHHHhCC--------CceEEe-CCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEe
Confidence 4578999999998862 214555 455899999999999999999999999996544433 257777766
Q ss_pred EcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCC
Q 013883 222 TLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPG 301 (434)
Q Consensus 222 ~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~ 301 (434)
+. .|++.+++++++++++|++++|+||||.+. ++++|+++|+++|+++|+|++|...... .++.
T Consensus 132 d~------~d~e~l~~~i~~~tklV~ie~p~NPtg~~~---dl~~I~~la~~~gi~lIvD~a~a~~~~~---~p~~---- 195 (388)
T PRK07811 132 DL------SDLDAVRAAITPRTKLIWVETPTNPLLSIT---DIAALAELAHDAGAKVVVDNTFASPYLQ---QPLA---- 195 (388)
T ss_pred CC------CCHHHHHHhcCcCCeEEEEECCCCCcceec---CHHHHHHHHHHcCCEEEEECCCCccccC---Cchh----
Confidence 54 379999999999999999999999999875 6778999999999999999999865321 1111
Q ss_pred CCCceEEEccCChhhcccc-ceeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 013883 302 MYERTVTMNSLGKTFSLTG-WKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAI 379 (434)
Q Consensus 302 ~~~~~i~i~S~SK~~g~~G-~R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~ 379 (434)
.+..+++.|++|.++.+| .+.||++++ +++.+.++..+.......+...++.+...|+. +....++..++...
T Consensus 196 -~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~t----l~~R~~~~~~na~~ 270 (388)
T PRK07811 196 -LGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKT----LAVRMDRHSENAEA 270 (388)
T ss_pred -hCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc----HHHHHHHHHHHHHH
Confidence 123489999999997544 467998885 66666666655544444455544444444543 34445556667777
Q ss_pred HHHHhhhC
Q 013883 380 LVEGLNAV 387 (434)
Q Consensus 380 l~~~L~~~ 387 (434)
+.+.|++.
T Consensus 271 la~~L~~~ 278 (388)
T PRK07811 271 VAEFLAGH 278 (388)
T ss_pred HHHHHHhC
Confidence 88888764
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=185.99 Aligned_cols=303 Identities=17% Similarity=0.196 Sum_probs=198.5
Q ss_pred cCCeeEeCCCCCCCC---CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFPNFD---GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~---~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...+||..|+.... .+|.+.+++.++++....... .. ..+....+++.+.+..| .+ .+++++++++|+.
T Consensus 36 g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~-~~-~~~~~~~l~~~l~~~~~----~~-~~~~~~SGs~A~e 108 (401)
T TIGR01885 36 GKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSR-AF-YNDVFGEFAEYVTKLFG----YD-KVLPMNTGAEAVE 108 (401)
T ss_pred CCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhcccccc-cc-CCHHHHHHHHHHHhhcC----CC-EEEEeCccHHHHH
Confidence 346789988866555 378899999888775322111 11 12333444555544443 24 6889999999999
Q ss_pred HHHHHcc---------CC-CCeEEEcCCCchhH-HHHHHHcCC------------EEEEEEcCCCCCCCCHHHHHhhcc-
Q 013883 185 ATILGLI---------NP-GDEVILFAPFYDSY-EATLSMAGA------------KIKCITLRPPDFAIPIEELKSTIS- 240 (434)
Q Consensus 185 ~~~~~l~---------~~-gd~Vlv~~p~y~~~-~~~~~~~G~------------~~~~v~~~~~~~~~d~~~l~~~i~- 240 (434)
.++..+. .+ .+.|+...-.|++. ...+...|- .+..++.. |++.++++++
T Consensus 109 ~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~ 182 (401)
T TIGR01885 109 TAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYN------NLEALEEALED 182 (401)
T ss_pred HHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCC------CHHHHHHHHHh
Confidence 9988752 13 35677777777753 333333221 12223222 6888888875
Q ss_pred --cCCcEEEecCCCCCcccCCCHH-HHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhc
Q 013883 241 --KNTRAILMNTPHNPTGKMFTRE-ELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFS 317 (434)
Q Consensus 241 --~~~~~i~~~~p~NPTG~~~~~e-~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 317 (434)
++..+|++..+++++|...+.+ .+++|.++|++||+++|+||+|.++.+.|...... ..+....++ +++|.++
T Consensus 183 ~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~-~~~~~~di~---~~gK~l~ 258 (401)
T TIGR01885 183 HGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVD-HENVKPDIV---LLGKALS 258 (401)
T ss_pred cCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHh-hcCCCCCEE---Eeecccc
Confidence 3556778878899999988644 69999999999999999999998876666443321 112222222 5789998
Q ss_pred cccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEe---ecC
Q 013883 318 LTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKV---FPS 394 (434)
Q Consensus 318 ~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~---~~~ 394 (434)
..|+|+|++++++++++.++......+++.+++.+.++.++|+..++ +.+.++.+++.+++++.|++++..+ +.+
T Consensus 259 ~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~--~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~g 336 (401)
T TIGR01885 259 GGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEE--EKLAENAEKLGEIFRDQLKKLPKPIITEVRG 336 (401)
T ss_pred CCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhccCCceeEEee
Confidence 65699999999999988776433334677788889999888875332 1344667777888999998875333 245
Q ss_pred CeeEEE-eeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 395 SGTYFV-VVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 395 ~~~~~~-~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
.|.|+. +++....+ .+..+++.+|.+ +||.+.|+.
T Consensus 337 ~g~~~~i~~~~~~~~-~~~~~l~~~l~~-~Gv~v~~~~ 372 (401)
T TIGR01885 337 RGLLNAIVIDESKTG-RTAWDLCLKLKE-KGLLAKPTH 372 (401)
T ss_pred cCeeEEEEeccCcch-hHHHHHHHHHHh-CCEEEEecC
Confidence 666654 33321101 135678888865 599998853
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-20 Score=181.80 Aligned_cols=237 Identities=16% Similarity=0.189 Sum_probs=173.3
Q ss_pred CCCCcHHHHHHHHHHHHcCCCCCCCCC--CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeE
Q 013883 120 NFDGPDFVKDAAIQAIRDGKNQYARGH--GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEV 197 (434)
Q Consensus 120 ~~~~~~~v~~~~~~~~~~~~~~Y~~~~--G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~V 197 (434)
+++.++.+.++..+.. ...+.|.... +..+|+++++++.+ .+ ++++++|+++|+..++.+++++||+|
T Consensus 34 ~~~~~~~~~~~~~~~~-~~~~~Y~r~~npt~~~Le~~iA~le~--------~~-~~~~~~sG~~Ai~~~l~all~~GD~V 103 (394)
T PRK09028 34 VFDTVAEMRHAAKNRA-NGEMFYGRRGTPTHFAFQAAIVELEG--------GA-GTALYPSGAAAISNALLSFLKAGDHL 103 (394)
T ss_pred ccCCHHHHHHHhccCc-cCCceecCCCCchHHHHHHHHHHHhC--------CC-cEEEECCHHHHHHHHHHHHhCCCCEE
Confidence 3445555444433221 1224576632 34689999998854 23 68899999999999999999999999
Q ss_pred EEcCCCchhHHHH----HHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHH
Q 013883 198 ILFAPFYDSYEAT----LSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIE 273 (434)
Q Consensus 198 lv~~p~y~~~~~~----~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~ 273 (434)
++++|.|.++... +...|+++..++.. +.+.+++++++++|+|++++|+||||.+. ++++|+++|++
T Consensus 104 vv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~------~~e~l~~~l~~~TklV~lespsNPtg~v~---dl~~I~~la~~ 174 (394)
T PRK09028 104 LMVDSCYEPTRDLCDKILKGFGIETTYYDPM------IGEGIRELIRPNTKVLFLESPGSITMEVQ---DVPTLSRIAHE 174 (394)
T ss_pred EEECCCcHHHHHHHHHhhhhcceEEEEECCC------CHHHHHHhcCcCceEEEEECCCCCCCcHH---HHHHHHHHHHH
Confidence 9999999887654 34578888766433 46789999999999999999999998764 78999999999
Q ss_pred cCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhh-ccccceeeeEEeChhhHHHHHHHhhccccCCchHHH
Q 013883 274 NDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTF-SLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQ 352 (434)
Q Consensus 274 ~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q 352 (434)
+|+++|+|++|..... ..+ + ..+-.+++.|.+|.+ |..+...|+++.++++.+.++..+.....+.++...
T Consensus 175 ~g~~lvvD~t~a~p~~---~~P---l--~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~~~~p~~a 246 (394)
T PRK09028 175 HDIVVMLDNTWASPIN---SRP---F--EMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQCTSPDDV 246 (394)
T ss_pred cCCEEEEECCcccccc---CCc---c--ccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHH
Confidence 9999999999975321 111 1 234569999999999 555667898888888777777665555556666666
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC
Q 013883 353 WAATAALRAPETYYEELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 353 ~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (434)
+.+...|+. +.-..++..++...+.+.|++.
T Consensus 247 ~l~~rgl~T----L~lR~~~~~~na~~la~~L~~~ 277 (394)
T PRK09028 247 YLAMRGLRT----LGVRLAQHEKNALKVANWLATR 277 (394)
T ss_pred HHHHcccCc----HHHHHHHHHHHHHHHHHHHhcC
Confidence 655555554 4445566677778888888775
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=183.57 Aligned_cols=301 Identities=18% Similarity=0.151 Sum_probs=205.5
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHH-HcCCCCC---CCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH--
Q 013883 113 NLGQGFPNFDGPDFVKDAAIQAI-RDGKNQY---ARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT-- 186 (434)
Q Consensus 113 ~l~~g~p~~~~~~~v~~~~~~~~-~~~~~~Y---~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~-- 186 (434)
-++.|++++..++.+.+.+.+.. -...+.| ...+|..+++.++++++.+.+|.+ .. .+..++|+.+.+..+
T Consensus 72 ~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~--~~-~l~~~~GA~a~~~~l~~ 148 (481)
T PRK04366 72 FYPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMD--AV-TLQPAAGAHGELTGLLM 148 (481)
T ss_pred eecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC--ce-EEEeCcHHHHHHHHHHH
Confidence 36778899888998888887652 2244667 356788999999999999999974 33 566667766665533
Q ss_pred HH-HccCCCC----eEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCH
Q 013883 187 IL-GLINPGD----EVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTR 261 (434)
Q Consensus 187 ~~-~l~~~gd----~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~ 261 (434)
++ .+.++|| +|++++|.|+.+...+...|++++.++++. ++.+|++.+++++++++++|++++|+ |||.. .
T Consensus 149 ~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~-~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~--~ 224 (481)
T PRK04366 149 IRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNE-DGLVDLEALKAAVGEDTAALMLTNPN-TLGLF--E 224 (481)
T ss_pred HHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecCC-CCCcCHHHHHhhcccCCeEEEEeCCC-Ccccc--c
Confidence 22 3456776 999999999999999999999999999963 68899999999999999999999997 99964 3
Q ss_pred HHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccc----cceeeeEEeChhhHHHHH
Q 013883 262 EELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLT----GWKIGWAIAPPHLTWGVR 337 (434)
Q Consensus 262 e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~----G~R~G~~~~~~~~~~~l~ 337 (434)
+++++|+++|+++|+++|+|.++..-..+ . .. ++..+-.+++++..|.++.| |..+|++.+++++.+.+.
T Consensus 225 ~dl~eI~~~a~~~gal~iVD~a~~~~~~g-~-~~----~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp 298 (481)
T PRK04366 225 RNILEIAEIVHEAGGLLYYDGANLNAILG-K-AR----PGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLP 298 (481)
T ss_pred hHHHHHHHHHHHcCCEEEEEecChhhhcc-c-CC----ccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCC
Confidence 47999999999999999999998532111 0 11 11234568889999998644 456889888877665541
Q ss_pred H-------------------HhhccccCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCee
Q 013883 338 Q-------------------AHSFLTFATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGT 397 (434)
Q Consensus 338 ~-------------------~~~~~~~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 397 (434)
. +++...++.+.....++..+|.. +.+.+++..++...+.+++.+.|+++ +.+.-+...
T Consensus 299 ~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~-~~~~~~~~~ 377 (481)
T PRK04366 299 VPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI-YDLPYDRPC 377 (481)
T ss_pred CCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-CcccCCCCe
Confidence 0 00111112222333344444443 44567777777788889999999886 333222111
Q ss_pred EE-EeeecC--CCCCCCHHHHHHHHHHhcCeEEE
Q 013883 398 YF-VVVDHT--PFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 398 ~~-~~~~~~--~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
+. ..++.. .....+..++.++|.++ ||.+.
T Consensus 378 ~~~~~~~~~~~~~~g~~~~~v~~~L~~~-Gi~~~ 410 (481)
T PRK04366 378 MHEFVLSGKKLKETGVRTLDIAKRLLDY-GFHPP 410 (481)
T ss_pred eEEEEEECccccccCCCHHHHHHHHHHC-CccCC
Confidence 11 222221 11112577888888764 98754
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=182.44 Aligned_cols=311 Identities=13% Similarity=0.118 Sum_probs=197.2
Q ss_pred CCeeEeCCCCCC--CC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFPN--FD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p~--~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...||+..|+-. +. .+|.+.+++.+++.+..+..... ...+....+++.+.+..+. ...+ .+++++++++|++.
T Consensus 40 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~-~~~~~~~~la~~l~~~~p~-~~~~-~~~f~~sGseA~e~ 116 (421)
T PRK09792 40 NEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQI-VPYESYVTLAEKINALAPV-SGQA-KTAFFTTGAEAVEN 116 (421)
T ss_pred CEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCcccCc-cCCHHHHHHHHHHHHhCCC-CCCc-eEEEeCChHHHHHH
Confidence 357888666322 22 36788889988887643211111 1234455566666654321 1123 68888899999999
Q ss_pred HHHHcc--CCCCeEEEcCCCchhHHHHHHHc-CC-------------EEEEEEcCCCCCCC----CHHHHHhhcc-----
Q 013883 186 TILGLI--NPGDEVILFAPFYDSYEATLSMA-GA-------------KIKCITLRPPDFAI----PIEELKSTIS----- 240 (434)
Q Consensus 186 ~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~~~~~~----d~~~l~~~i~----- 240 (434)
+++... ....+|+.....|++........ |. .+..+|+..+..++ +++.+++.+.
T Consensus 117 AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (421)
T PRK09792 117 AVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEA 196 (421)
T ss_pred HHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCC
Confidence 887653 23357888888888864433221 21 12333332211112 3477777775
Q ss_pred cCCcEEEecCCCCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccc
Q 013883 241 KNTRAILMNTPHNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLT 319 (434)
Q Consensus 241 ~~~~~i~~~~p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 319 (434)
++.++|++...++++|+.+ +.+.+++|.++|++||+++|+||+|.+|.+.+....+..+...+| +.+|+|.++ +
T Consensus 197 ~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pD----i~t~gK~l~-~ 271 (421)
T PRK09792 197 KQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPD----LMTMAKSLA-G 271 (421)
T ss_pred CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCc----EEEeehhhc-C
Confidence 3456777766699999865 889999999999999999999999999987776555554433344 689999999 9
Q ss_pred cceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCe-
Q 013883 320 GWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSG- 396 (434)
Q Consensus 320 G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~- 396 (434)
|+|+||+++++++.+.+.......+++.+++.+.++.++|+-. +++++++++.-+..++.+.+..++.+. +....|
T Consensus 272 G~pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~~~p~-v~~vrG~ 350 (421)
T PRK09792 272 GMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTLIDAKESVPA-IAAVRGL 350 (421)
T ss_pred CCceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhCCC-cceeccc
Confidence 9999999999999877654445568888999999777766532 234444443222223333322233443 223445
Q ss_pred eEEEeeecCCCCC-----CCHHHHHHHHHHhcCeEEEC
Q 013883 397 TYFVVVDHTPFGH-----ETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 397 ~~~~~~~~~~~~~-----~~~~~~~~~Ll~~~GV~v~p 429 (434)
|+++|+.+..... .....++..+++ +||.+.+
T Consensus 351 Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~-~Gv~i~~ 387 (421)
T PRK09792 351 GSMIAAEFNDPQTGEPSAAIAQKIQQRALA-QGLLLLT 387 (421)
T ss_pred ceEEEEEecCCccCCcchHHHHHHHHHHHH-CCcEEee
Confidence 7888888753211 123456667765 5999975
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=178.15 Aligned_cols=285 Identities=19% Similarity=0.189 Sum_probs=192.5
Q ss_pred CCcHHHHHHHHHHHHcCC-CCC--CCCCC------cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc--
Q 013883 122 DGPDFVKDAAIQAIRDGK-NQY--ARGHG------VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL-- 190 (434)
Q Consensus 122 ~~~~~v~~~~~~~~~~~~-~~Y--~~~~G------~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l-- 190 (434)
+.++.+.+++.+.+.+.. ... ....+ +.++|+.+++++ | .+++ +|++++|+++++.+++..+
T Consensus 10 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g--~~~~-~v~~t~~~t~a~~~~l~~~~~ 82 (364)
T PLN02651 10 PIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALI----G--ADPK-EIIFTSGATESNNLAIKGVMH 82 (364)
T ss_pred CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHh----C--CCCC-eEEEeCCHHHHHHHHHHHHHH
Confidence 456678888877664321 100 00001 234455555544 4 4466 8999999999988776554
Q ss_pred --cCCCCeEEEcCCCchhHHHH---HHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHH
Q 013883 191 --INPGDEVILFAPFYDSYEAT---LSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 191 --~~~gd~Vlv~~p~y~~~~~~---~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
.++||+|++.+..|+.+... +...|++++.++.++ ++.+|++.++++++++++++++++++|+||...+ ++
T Consensus 83 ~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~---l~ 158 (364)
T PLN02651 83 FYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKS-DGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQP---VE 158 (364)
T ss_pred hccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCC-CCcCCHHHHHHhcCCCcEEEEEECCCCCceeccc---HH
Confidence 47899999998777765433 445799999998874 6788999999999999999999999999999986 66
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHh-----
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAH----- 340 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~----- 340 (434)
+|.++|+++|+++++|.++..... ...+.. .+-.+++.|..|.+|..| +|+++.+++....+....
T Consensus 159 ~I~~~~~~~g~~~~vD~a~~~g~~---~~~~~~----~~~D~~~~s~hK~~gp~G--~g~l~v~~~~~~~l~p~~~g~~~ 229 (364)
T PLN02651 159 EIGELCREKKVLFHTDAAQAVGKI---PVDVDD----LGVDLMSISGHKIYGPKG--VGALYVRRRPRVRLEPLMSGGGQ 229 (364)
T ss_pred HHHHHHHHcCCEEEEEcchhhCCc---ccCccc----CCCCEEEechhhhCCCCc--eEEEEEcCCCCCCCCccccCCCc
Confidence 789999999999999999975321 112221 234578889999655334 899998876554432211
Q ss_pred --hccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh-C-CCEeecCC------eeEEEeeecCCCCCC
Q 013883 341 --SFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA-V-GFKVFPSS------GTYFVVVDHTPFGHE 410 (434)
Q Consensus 341 --~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~------~~~~~~~~~~~~~~~ 410 (434)
.....+++.....++..+|+...+..+..+++.++.++++.+.|++ + |++++.+. .+.. .+.+. +.
T Consensus 230 ~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~-~~~~~--~~- 305 (364)
T PLN02651 230 ERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTL-NLSFA--YV- 305 (364)
T ss_pred cCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEE-EEEeC--CC-
Confidence 1223456666666666666654334566778888888999998875 3 78777541 2232 23332 22
Q ss_pred CHHHHHHHHHHhcCeEEECCCCC
Q 013883 411 TDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 411 ~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
++.+++.+|. + |.+..|+.|
T Consensus 306 ~~~~~~~~L~-~--i~v~~g~~c 325 (364)
T PLN02651 306 EGESLLMGLK-E--VAVSSGSAC 325 (364)
T ss_pred CHHHHHHHhC-C--EEEEchhhc
Confidence 4678888773 3 999888743
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-20 Score=184.26 Aligned_cols=316 Identities=14% Similarity=0.099 Sum_probs=189.5
Q ss_pred CCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...||+..|.- .+. .+|.+.+++.+++.+..+....... .+.+.++++.+.+.... ...+ .+++++++++|++.
T Consensus 33 ~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~-~~~~~~la~~l~~~~p~-~~~~-~v~f~~sGseA~e~ 109 (420)
T TIGR00700 33 NRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTP-YEGYVALAEKLNRIAPG-SGPK-KSVFFNSGAEAVEN 109 (420)
T ss_pred CEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCccccccC-ChHHHHHHHHHHHhCCC-CCCC-EEEEeCCcHHHHHH
Confidence 35788866632 122 3677888999988764321111111 23344566666544321 1124 79999999999999
Q ss_pred HHHHcc--CCCCeEEEcCCCchhHHHHHHHc-CC-------------EEEEEEcCC--CC--------CCCCHHHHHhhc
Q 013883 186 TILGLI--NPGDEVILFAPFYDSYEATLSMA-GA-------------KIKCITLRP--PD--------FAIPIEELKSTI 239 (434)
Q Consensus 186 ~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~--~~--------~~~d~~~l~~~i 239 (434)
+++... ....+|+.....|++.......+ |- .+..+|+.. .. +.-+++.+++.+
T Consensus 110 AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (420)
T TIGR00700 110 AVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIF 189 (420)
T ss_pred HHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHH
Confidence 887543 23457888888888865443322 11 122233211 00 001255666655
Q ss_pred c-----cCCcEEEecCCCCCcccCCC-HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCC
Q 013883 240 S-----KNTRAILMNTPHNPTGKMFT-REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLG 313 (434)
Q Consensus 240 ~-----~~~~~i~~~~p~NPTG~~~~-~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~S 313 (434)
. ++..+|++...+.-+|.+++ .+.+++|.++|++||+++|+||+|.+|.+.+....+..+...+| +.+||
T Consensus 190 ~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pD----i~~ls 265 (420)
T TIGR00700 190 VIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPD----LITTA 265 (420)
T ss_pred HhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCC----EEEee
Confidence 2 34566777655777888665 44599999999999999999999999977765444333322233 55699
Q ss_pred hhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCC-CE
Q 013883 314 KTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVG-FK 390 (434)
Q Consensus 314 K~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g-~~ 390 (434)
|.++ +|+|+||+++++++++.+.......+++.+++.+.++.++|+.. ++..+.+.+..+..++.+.+...+.+ +.
T Consensus 266 K~l~-~G~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~ 344 (420)
T TIGR00700 266 KSLA-DGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIG 344 (420)
T ss_pred cccc-CCcceEEEEecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCEE
Confidence 9999 99999999999999887765555578899999999997777541 22333333333333333433333333 33
Q ss_pred eecCCeeEEEeeecCCC-CCCCHHHHHHHHH---HhcCeEEECCCCC
Q 013883 391 VFPSSGTYFVVVDHTPF-GHETDIAFCEYLI---KEVGVVAIPTSVF 433 (434)
Q Consensus 391 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ll---~~~GV~v~pG~~F 433 (434)
.+.+.|. ++++.+.+. ...++.+++.++. .++||.+.||+.|
T Consensus 345 ~vrg~G~-~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f 390 (420)
T TIGR00700 345 DVRGLGA-MIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMF 390 (420)
T ss_pred Eeeccce-EEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCC
Confidence 4455554 555544221 0111223333333 3569999998765
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.2e-20 Score=181.29 Aligned_cols=210 Identities=13% Similarity=0.118 Sum_probs=159.4
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH----HHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT----LSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~ 223 (434)
...|+++++++.+ .+ ++++++|+++++.+++.+++++||.|++++|.|.+.... ....|++++.++.
T Consensus 55 ~~~Le~~lA~leg--------~e-~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~ 125 (388)
T PRK08861 55 RGLLEQTLSELES--------GK-GAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ 125 (388)
T ss_pred HHHHHHHHHHHhC--------CC-eEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC
Confidence 5678888888876 45 899999999999999999999999999999999974433 2335677777642
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
.|++.+++++++++++|++++|+||||.+++ +++|.++|+++|+++|+|++|....+. . ++ . .
T Consensus 126 ------~d~e~l~~~i~~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~~~~-~--pl-~----~ 188 (388)
T PRK08861 126 ------SDAAALDAALAKKPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTPVLQ-K--PL-E----L 188 (388)
T ss_pred ------CCHHHHHHhcCcCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccccC-C--Cc-c----c
Confidence 3789999999989999999999999999996 556888899999999999999864332 1 11 1 1
Q ss_pred CceEEEccCChhhcc-ccceeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSL-TGWKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILV 381 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~-~G~R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~ 381 (434)
+-.+++.|++|.++- .+...|+++++ +++.+.++..+.......++...+.+...|+. +.-..++..++...+.
T Consensus 189 GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~T----l~lR~~~~~~~a~~~a 264 (388)
T PRK08861 189 GADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRT----LGARMRVHEESAQQIL 264 (388)
T ss_pred CCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCC----HHHHHHHHHHHHHHHH
Confidence 234899999999863 34678998875 56767777766666666677766665555554 3334455566677777
Q ss_pred HHhhhC
Q 013883 382 EGLNAV 387 (434)
Q Consensus 382 ~~L~~~ 387 (434)
+.|++.
T Consensus 265 ~~L~~~ 270 (388)
T PRK08861 265 AYLQTQ 270 (388)
T ss_pred HHHHhC
Confidence 777764
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-19 Score=178.77 Aligned_cols=308 Identities=17% Similarity=0.152 Sum_probs=199.3
Q ss_pred cCCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...|||..|.- .+. .+|.+.+++.+++....+.+ .... .+...++++.+.+..+. .+ .+++++++++|++
T Consensus 39 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~-~~~~-~~~~~~la~~L~~~~~~---~~-~v~f~~sGseA~e 112 (408)
T PRK04612 39 GREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTS-NVFY-SAPPLKLAEELVTASRF---AE-KVFLCNSGTEANE 112 (408)
T ss_pred CCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccc-cccC-CHHHHHHHHHHHhhCCC---CC-EEEEcCchHHHHH
Confidence 335788876632 222 36778889988887643222 2112 24455667776654321 24 7999999999999
Q ss_pred HHHHHccC--------CC-CeEEEcCCCchhHHHHHHH-cCCEEEEEEcC--CCC----CCCCHHHHHhhcccCCcEEEe
Q 013883 185 ATILGLIN--------PG-DEVILFAPFYDSYEATLSM-AGAKIKCITLR--PPD----FAIPIEELKSTISKNTRAILM 248 (434)
Q Consensus 185 ~~~~~l~~--------~g-d~Vlv~~p~y~~~~~~~~~-~G~~~~~v~~~--~~~----~~~d~~~l~~~i~~~~~~i~~ 248 (434)
.+++.... ++ ++|+.....|++....... .|.....-++. ..+ ...|++.+++++..+..+.++
T Consensus 113 ~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi 192 (408)
T PRK04612 113 AAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVM 192 (408)
T ss_pred HHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhCCCCEEEEE
Confidence 99876431 12 4688888888886544332 22211110010 001 112789999988766777777
Q ss_pred cCCCCCcccCCC--HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeE
Q 013883 249 NTPHNPTGKMFT--REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWA 326 (434)
Q Consensus 249 ~~p~NPTG~~~~--~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~ 326 (434)
..|.+++|-+++ .+.+++|.++|++||+++|+||+|.+|.+.|...... ..+.+..+.+|||.+| +|+|+||+
T Consensus 193 ~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~----~~~~~pdi~t~~K~l~-~G~piga~ 267 (408)
T PRK04612 193 LEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHW----QEQVTPDIVTLAKALG-GGFPIGAM 267 (408)
T ss_pred ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhh----hcCCCCCEEEEcchhc-CCCceEEE
Confidence 889888876554 6789999999999999999999999887655432221 1234556889999999 99999999
Q ss_pred EeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC----CCE-eecCCeeEEEe
Q 013883 327 IAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV----GFK-VFPSSGTYFVV 401 (434)
Q Consensus 327 ~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~-~~~~~~~~~~~ 401 (434)
++++++.+.+.......+++.+++.+.++.++|+..++ +++.++.+++.+++.+.|+++ ++- .+...|. ++-
T Consensus 268 ~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl-~~~ 344 (408)
T PRK04612 268 LAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLAS--PQIAANVARQSAALRAGLEALNAEFGVFAQVRGRGL-MLG 344 (408)
T ss_pred EECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeccce-EEE
Confidence 99998887776555556788899999999998876322 244556666666666666553 322 2344444 434
Q ss_pred eecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 402 VDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 402 ~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
+.+.+.......++++.+. ++||++.|.
T Consensus 345 i~~~~~~~~~a~~i~~~l~-~~Gvlv~~~ 372 (408)
T PRK04612 345 AVLAPAHAGQAGAILDLAA-EHGLLLLQA 372 (408)
T ss_pred EEecCchhhHHHHHHHHHH-HCCeEEeeC
Confidence 4442211112445666665 469999874
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-19 Score=177.28 Aligned_cols=289 Identities=15% Similarity=0.144 Sum_probs=196.1
Q ss_pred CeeEeCCC-CCCCCCcHHHHHHHHHHHHcCCCCCC---CCCCc----HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 110 GAINLGQG-FPNFDGPDFVKDAAIQAIRDGKNQYA---RGHGV----PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 110 ~~i~l~~g-~p~~~~~~~v~~~~~~~~~~~~~~Y~---~~~G~----~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
..++|+.. |.++...|.+++++.+++++-..+-. -..|. .+|+++++++++ .+ ..++.+++..
T Consensus 103 ~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g--------~e-~all~sSGy~ 173 (476)
T PLN02955 103 KLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKK--------KE-DCLVCPTGFA 173 (476)
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHC--------CC-cEEEECChHH
Confidence 57999886 99999999999999999876211111 12243 567888888776 34 4556666677
Q ss_pred HHHHHHHHc--------------cCCCCeEEEcCCCchhHHHHHHHc----CCEEEEEEcCCCCCCCCHHHHHhhccc--
Q 013883 182 AIAATILGL--------------INPGDEVILFAPFYDSYEATLSMA----GAKIKCITLRPPDFAIPIEELKSTISK-- 241 (434)
Q Consensus 182 ai~~~~~~l--------------~~~gd~Vlv~~p~y~~~~~~~~~~----G~~~~~v~~~~~~~~~d~~~l~~~i~~-- 241 (434)
|...++.++ .+++|.|+...-.|....+.++.. +++++.++.. |++.|++.++.
T Consensus 174 AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HN------D~~~Le~~L~~~~ 247 (476)
T PLN02955 174 ANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHC------DMYHLNSLLSSCK 247 (476)
T ss_pred HHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCC------CHHHHHHHHHhCC
Confidence 777777766 245667888888899999988887 5777777655 78889888754
Q ss_pred -CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCcccc-CCCCCCCceEEEccCChhhccc
Q 013883 242 -NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIA-SLPGMYERTVTMNSLGKTFSLT 319 (434)
Q Consensus 242 -~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~-~~~~~~~~~i~i~S~SK~~g~~ 319 (434)
+.++|++....++.|.+.+ +++|.++|++||+++|+||+|..+.++....... .+....+.+++++||||.+|..
T Consensus 248 ~~~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~ 324 (476)
T PLN02955 248 MKRKVVVTDSLFSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCH 324 (476)
T ss_pred CCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhcc
Confidence 3455566666899999887 6668888899999999999999888775433322 2222357789999999999866
Q ss_pred cceeeeEEeChhhHHHHHHHhhccccCCchH--HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCee
Q 013883 320 GWKIGWAIAPPHLTWGVRQAHSFLTFATSTP--MQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGT 397 (434)
Q Consensus 320 G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~--~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 397 (434)
| ||+++++++++.++...+...|+.+.+ ...++.++|+.... ....+++++++.+++++. .|+.+ ...
T Consensus 325 G---Gfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~-~~~~r~~L~~n~~~fr~~---~G~~~---~sP 394 (476)
T PLN02955 325 G---GFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARK-EKWRRKAIWERVKEFKAL---SGVDI---SSP 394 (476)
T ss_pred C---ceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHh---cCCCC---CCC
Confidence 6 999999999988887666555544333 33344444432111 123567777787777773 35553 122
Q ss_pred EEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 398 YFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
++.+.+. ......+++++|+++ ||++.+-
T Consensus 395 -I~pI~ig--~~~~a~~~~~~L~~~-Gi~v~~i 423 (476)
T PLN02955 395 -IISLVVG--NQEKALKASRYLLKS-GFHVMAI 423 (476)
T ss_pred -EEEEEeC--CHHHHHHHHHHHHHC-CCEEEEE
Confidence 2222221 111345678888765 9998863
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-19 Score=174.56 Aligned_cols=275 Identities=18% Similarity=0.198 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc-cCCCCeEEEcCCC
Q 013883 125 DFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL-INPGDEVILFAPF 203 (434)
Q Consensus 125 ~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vlv~~p~ 203 (434)
+...+++.+++..+. |....+..+|+++++++++ .+ +.++++|+++|+.+++.++ +++||+|+++.|+
T Consensus 10 ~~~~~~v~~~~~~~~--~~~g~~~~~le~~la~~~g--------~~-~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~ 78 (380)
T TIGR03588 10 QDDIDAVVEVLKSDF--LTQGPTVPAFEEALAEYVG--------AK-YAVAFNSATSALHIACLALGVGPGDRVWTTPIT 78 (380)
T ss_pred HHHHHHHHHHHhcCC--ccCChhHHHHHHHHHHHHC--------CC-eEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcc
Confidence 334666777776653 3334457899999999987 23 4566667899999999998 8999999999999
Q ss_pred chhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc----cCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEE
Q 013883 204 YDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS----KNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVF 279 (434)
Q Consensus 204 y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~----~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI 279 (434)
|..+...+...|++++.++++++++.+|++.++++++ +++++|++ .|++|... ++++|.++|++||++||
T Consensus 79 ~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~---~~~~G~~~---~~~~i~~l~~~~~~~lI 152 (380)
T TIGR03588 79 FVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVP---VDFAGKSV---DMQAIAALAKKHGLKII 152 (380)
T ss_pred hHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEE---eCCCCccC---CHHHHHHHHHHcCCEEE
Confidence 9999999999999999999987678899999999998 68888885 45689776 47779999999999999
Q ss_pred EcCcCCccc-cCCCCccccCCCCCCCceEEEccCC--hhhccccceeeeEEeC-hhhHHHHHHHhhccc-----------
Q 013883 280 SDEVYDKLA-FEMDHISIASLPGMYERTVTMNSLG--KTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLT----------- 344 (434)
Q Consensus 280 ~Deay~~~~-~~~~~~~~~~~~~~~~~~i~i~S~S--K~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~~----------- 344 (434)
+|+++.... +++.. +... ... .+.+.||+ |.++. | ..|+++.+ +++.++++..+....
T Consensus 153 ~D~a~a~g~~~~~~~--~g~~-~~~--d~~~~S~~~~K~~~~-~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 225 (380)
T TIGR03588 153 EDASHALGAEYGGKP--VGNC-RYA--DATVFSFHPVKIITT-A-EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQD 225 (380)
T ss_pred EECCCcccCccCCEe--CCCc-ccc--ceEEEecCCCCcccc-c-CceEEEECCHHHHHHHHHHHHCCCCCCcccccccc
Confidence 999998643 33322 1111 112 36666765 88863 3 46766664 667776665443211
Q ss_pred --------------cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC-CEeecC-C---eeEEEe-eec
Q 013883 345 --------------FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG-FKVFPS-S---GTYFVV-VDH 404 (434)
Q Consensus 345 --------------~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~---~~~~~~-~~~ 404 (434)
+..+.+........|+. +++..++-+++.+++.+.|.+++ +....+ . ..++.+ +.+
T Consensus 226 ~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~----l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~ 301 (380)
T TIGR03588 226 EGPWYYEQQELGFNYRMTDIQAALGLSQLKK----LDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILL 301 (380)
T ss_pred cCcceeeeeccccccCccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEE
Confidence 01111212222222332 45555666677778888887763 333222 1 122222 223
Q ss_pred CC-CCCCCHHHHHHHHHHhcCeEEEC
Q 013883 405 TP-FGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 405 ~~-~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
.. .+ .+..++.+.|. +.||.+.+
T Consensus 302 ~~~~~-~~r~~l~~~L~-~~gI~~~~ 325 (380)
T TIGR03588 302 DQEFG-CTRKEVFEALR-AAGIGVQV 325 (380)
T ss_pred CCcCC-CCHHHHHHHHH-HCCCCccc
Confidence 21 12 24677888775 56998864
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.4e-19 Score=172.42 Aligned_cols=270 Identities=19% Similarity=0.190 Sum_probs=184.0
Q ss_pred HHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc-cCCCCeEEEcCCCchhH
Q 013883 129 DAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSY 207 (434)
Q Consensus 129 ~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vlv~~p~y~~~ 207 (434)
+++.+.+.++.. .......++++.++++++ .+ ++++++|+++++..++.++ ..+||+|+++.++|..+
T Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~--------~~-~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~ 71 (352)
T cd00616 3 EAVEEVLDSGWL--TLGPKVREFEKAFAEYLG--------VK-YAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVAT 71 (352)
T ss_pred HHHHHHHHcCCc--cCCHHHHHHHHHHHHHhC--------CC-eEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHH
Confidence 345566665443 223356789999999886 34 5777888899999999998 68999999999999999
Q ss_pred HHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCcc
Q 013883 208 EATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKL 287 (434)
Q Consensus 208 ~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~ 287 (434)
...+...|++++.+++++.++.+|++.+++.+++++++|+++ |++|...+ +++|.++|+++|+++|+|++|...
T Consensus 72 ~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g 145 (352)
T cd00616 72 ANAILLLGATPVFVDIDPDTYNIDPELIEAAITPRTKAIIPV---HLYGNPAD---MDAIMAIAKRHGLPVIEDAAQALG 145 (352)
T ss_pred HHHHHHcCCeEEEEecCCCcCCcCHHHHHHhcCcCCeEEEEE---CCCCCcCC---HHHHHHHHHHcCCeEEEECCCCCC
Confidence 999999999999999976578899999999998899999875 47998774 667888899999999999999754
Q ss_pred ccCCCCccccCCCCCCCceEEEccCC--hhhccccceeeeEEeC-hhhHHHHHHHhhccc---------------cCCch
Q 013883 288 AFEMDHISIASLPGMYERTVTMNSLG--KTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLT---------------FATST 349 (434)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~i~S~S--K~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~~---------------~~~~~ 349 (434)
.... ...+..+ ..+.+.||+ |.++ +.+.|+++.+ +++.++++....... +..+.
T Consensus 146 ~~~~-~~~~~~~-----~d~~~~S~~~~K~~~--~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (352)
T cd00616 146 ATYK-GRKVGTF-----GDAGAFSFHPTKNLT--TGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSE 217 (352)
T ss_pred CeEC-CEEcccC-----cceeEEcCCCCCCCc--ccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCH
Confidence 3211 1111111 125667766 8774 4457888876 577777765543221 11122
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCe----e-EEEeeecCCCCCCCHHHHHHHHHHhc
Q 013883 350 PMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSG----T-YFVVVDHTPFGHETDIAFCEYLIKEV 423 (434)
Q Consensus 350 ~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~Ll~~~ 423 (434)
....++...+ +.+++..++.+++.+++++.|.++ |+++..+.. . +.+.+.+......+..++.+.|.+ .
T Consensus 218 ~~aa~~~~~l----~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~-~ 292 (352)
T cd00616 218 IQAAIGLAQL----EKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKE-A 292 (352)
T ss_pred HHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHH-C
Confidence 2222222222 235666677788888999999885 777653321 1 222333321112357788888754 5
Q ss_pred CeEEE
Q 013883 424 GVVAI 428 (434)
Q Consensus 424 GV~v~ 428 (434)
||.+.
T Consensus 293 gI~~~ 297 (352)
T cd00616 293 GIETR 297 (352)
T ss_pred CCCee
Confidence 99664
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-20 Score=177.62 Aligned_cols=221 Identities=18% Similarity=0.174 Sum_probs=152.2
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC-
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP- 226 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~- 226 (434)
+.++++.++++++ .++.+++++|+++++..++.+++++||+|+++.|+|.+....+...|++++.++.+.+
T Consensus 61 i~~~~~~~A~~~g--------a~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~ 132 (294)
T cd00615 61 IKEAQELAARAFG--------AKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNP 132 (294)
T ss_pred HHHHHHHHHHHhC--------CCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCc
Confidence 6678888888876 2325666999999999999999999999999999999999999999999998877542
Q ss_pred C----CCCCHHHHHhhccc--CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCc-cccCCCCccccCC
Q 013883 227 D----FAIPIEELKSTISK--NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDK-LAFEMDHISIASL 299 (434)
Q Consensus 227 ~----~~~d~~~l~~~i~~--~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~-~~~~~~~~~~~~~ 299 (434)
+ +.+|++.+++++++ +++++++++| |++|.+++ +++|+++|+++|+++|+||+|.. +.+.+..+ ...
T Consensus 133 ~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~~~~-~~~- 206 (294)
T cd00615 133 YYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILP-SSA- 206 (294)
T ss_pred ccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCcccC-cch-
Confidence 2 37899999999964 6889999998 79999985 67799999999999999999974 33433211 111
Q ss_pred CCCCCceEEEccCChhhccccceee-eEEeChhh--HHHHHHHhh-ccccCCchHHHHHHHHHHhCChHHHHHHHHHHHH
Q 013883 300 PGMYERTVTMNSLGKTFSLTGWKIG-WAIAPPHL--TWGVRQAHS-FLTFATSTPMQWAATAALRAPETYYEELKRDYSA 375 (434)
Q Consensus 300 ~~~~~~~i~i~S~SK~~g~~G~R~G-~~~~~~~~--~~~l~~~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~ 375 (434)
...+.++++.|++|.+ +|++.| +++.+.+. ..++..... ..+.+++.+...++..++....+.-++..+++.+
T Consensus 207 -~~~~~div~~S~hK~l--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~ 283 (294)
T cd00615 207 -AMAGADIVVQSTHKTL--PALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMALEGKELVEELIE 283 (294)
T ss_pred -hhcCCcEEEEchhccc--chHhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 1235679999999986 577764 44454432 223333222 1223333333333333333211222334455556
Q ss_pred HHHHHHHHhh
Q 013883 376 KKAILVEGLN 385 (434)
Q Consensus 376 ~~~~l~~~L~ 385 (434)
+.+.+++.|.
T Consensus 284 ~~~~~r~~l~ 293 (294)
T cd00615 284 LALYARQEIN 293 (294)
T ss_pred HHHHHHHHHh
Confidence 6666666554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=173.10 Aligned_cols=298 Identities=18% Similarity=0.195 Sum_probs=206.7
Q ss_pred cCCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCC---CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 108 KHGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGK---NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 108 ~~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~---~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
+...|||..|. ..+. .+|.+.+++.++++.-. +.|. .+.+.++++.|.+..+ ..+ .++++|+++|
T Consensus 41 G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~~-----~~~~~~la~~L~~~s~---~~d-~vff~NSGaE 111 (404)
T COG4992 41 GREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFY-----NEPQAELAEKLVELSP---FAD-RVFFCNSGAE 111 (404)
T ss_pred CCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccccC-----ChHHHHHHHHHHhhCc---ccc-EEEEcCCcHH
Confidence 34678987773 3333 37888889988876632 2222 2446666666665443 145 8999999999
Q ss_pred HHHHHHHHcc---C-C-CCeEEEcCCCchhHHHHHHHcCCE-------------EEEEEcCCCCCCCCHHHHHhhcccCC
Q 013883 182 AIAATILGLI---N-P-GDEVILFAPFYDSYEATLSMAGAK-------------IKCITLRPPDFAIPIEELKSTISKNT 243 (434)
Q Consensus 182 ai~~~~~~l~---~-~-gd~Vlv~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~d~~~l~~~i~~~~ 243 (434)
|++.++.... . + ..+|+.....|++-....-.++.+ +..+|+. |++.++++++++|
T Consensus 112 A~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn------Di~al~~ai~~~t 185 (404)
T COG4992 112 ANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN------DIEALEAAIDEDT 185 (404)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC------CHHHHHHHhccCe
Confidence 9999987652 2 2 247888888877643332222222 3334433 8999999999999
Q ss_pred cEEEecCCCCCcccCCC-HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccce
Q 013883 244 RAILMNTPHNPTGKMFT-REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWK 322 (434)
Q Consensus 244 ~~i~~~~p~NPTG~~~~-~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R 322 (434)
.+|++...+-..|++++ .+.++++.++|++||+++|.||++.++...|+.+....+.-.+| |.++.|.+| .|+.
T Consensus 186 aAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PD----I~tlaK~Lg-GG~P 260 (404)
T COG4992 186 AAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPD----ILTLAKALG-GGFP 260 (404)
T ss_pred EEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCC----EEEeecccc-CCcc
Confidence 99999888999999665 45599999999999999999999999988887766665544455 777899999 9999
Q ss_pred eeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC----C-CEeecCCee
Q 013883 323 IGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV----G-FKVFPSSGT 397 (434)
Q Consensus 323 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~~ 397 (434)
+|.+++.+.+.+.+..-....+|+.++++.+++.++|+... -+++.++.+++-++|.+.|+++ + +.-+... |
T Consensus 261 igA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~--~e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~-G 337 (404)
T COG4992 261 IGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLL--EEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGR-G 337 (404)
T ss_pred ceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHc--chhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecc-e
Confidence 99999986666656655566789999999999988888531 1234445555566666666554 3 2222333 4
Q ss_pred EEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 398 YFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+++=+.+.+.. ...++++.+.++ ||.+.+..
T Consensus 338 LmiGiel~~~~--~a~~~~~~~~~~-gvL~~~a~ 368 (404)
T COG4992 338 LMIGIELKEPY--RARDIVRALREE-GVLVLPAG 368 (404)
T ss_pred eEEEEEecCcc--cHHHHHHHHHHC-CeEEecCC
Confidence 44445553311 256788888665 99987743
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-19 Score=179.16 Aligned_cols=315 Identities=14% Similarity=0.110 Sum_probs=188.6
Q ss_pred cCCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...|||..|.- .+. .+|.+.+++.+++++..+..... -..+.+..+++.+....+... .+ .+++++++++|++
T Consensus 53 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~-~~~~~~~~la~~L~~~~p~~~-~~-~v~f~~sGseA~e 129 (451)
T PRK06918 53 GNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTGFNV-MMYEPYIELAEKLAALAPGSF-DK-KVLFLNSGAEAVE 129 (451)
T ss_pred CCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCccccc-cccHHHHHHHHHHHHhCCCCC-CC-EEEEcCCcHHHHH
Confidence 345788876632 222 36778899999887643211111 123455667777765443211 14 7999999999999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHHHc-CC-------------EEEEEEcCCC---CCCCC--------HHHHHh
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLSMA-GA-------------KIKCITLRPP---DFAIP--------IEELKS 237 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~~---~~~~d--------~~~l~~ 237 (434)
.+++... ....+|+.....|++........ |. .+..+|+... ..+.. ++.+++
T Consensus 130 ~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (451)
T PRK06918 130 NAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKN 209 (451)
T ss_pred HHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHH
Confidence 9987553 23457888888888865543332 21 1222332210 01111 123333
Q ss_pred hc----ccCCcEEEecCCCCCc-ccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEcc
Q 013883 238 TI----SKNTRAILMNTPHNPT-GKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNS 311 (434)
Q Consensus 238 ~i----~~~~~~i~~~~p~NPT-G~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S 311 (434)
.+ ..+..+.++..|.+.. |.++ +.+.+++|.++|++||+++|+||+|.+|.+.+...++..+...+| +.|
T Consensus 210 ~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pD----i~t 285 (451)
T PRK06918 210 FFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPD----LIT 285 (451)
T ss_pred HHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCC----EEe
Confidence 33 2233444455664444 6644 555599999999999999999999999987765444444432333 558
Q ss_pred CChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh----C
Q 013883 312 LGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA----V 387 (434)
Q Consensus 312 ~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~----~ 387 (434)
|||.++ +|+|+||+++++++.+.+.......+++.+++.+.++.++|+..++ ....++.+++.+.+.+.|++ .
T Consensus 286 ~sK~l~-~G~pig~v~~~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~--~~~~~~~~~~g~~l~~~l~~l~~~~ 362 (451)
T PRK06918 286 VSKSLG-AGVPISGVIGRKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEK--ENLNDRAIELGKVVMNRFEEMKNKY 362 (451)
T ss_pred eehhhc-CCCccEEEEEcHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999 9999999999999988776555567889999999997777763210 11122223333333333332 3
Q ss_pred C-CEeecCCeeEEEeeecCCC--CCC---CHHHHHHHHHHhcCeEEECCCCC
Q 013883 388 G-FKVFPSSGTYFVVVDHTPF--GHE---TDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 388 g-~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+ +..+...|.|+.|....+. ... ....+.+.++ ++||.+.|+..|
T Consensus 363 ~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~Gvlv~~~~~~ 413 (451)
T PRK06918 363 NCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEAN-KRGLLLLSAGTY 413 (451)
T ss_pred CCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHH-HCCeEEeecCCC
Confidence 2 2334567888776543111 010 1233444444 569999997643
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-19 Score=175.63 Aligned_cols=212 Identities=17% Similarity=0.181 Sum_probs=155.4
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHH----HHcCC
Q 013883 141 QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATL----SMAGA 216 (434)
Q Consensus 141 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~ 216 (434)
+|+. ....+|+++++++.. ++ .+++ +++++++..++.+++++||+|++++|.|+.+...+ ...|+
T Consensus 47 ry~~-p~~~~Le~~lA~l~~--------~~-~v~~-~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~ 115 (366)
T PRK07582 47 RASN-PTWRALEAALGELEG--------AE-ALVF-PSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV 115 (366)
T ss_pred CCCC-ccHHHHHHHHHHHcC--------CC-EEEE-CCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE
Confidence 4443 356889999998761 33 4555 55568999999999999999999999999887654 45799
Q ss_pred EEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccc
Q 013883 217 KIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISI 296 (434)
Q Consensus 217 ~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~ 296 (434)
+++.++.++. .+ .+.+++++|++++|+||||.+. ++++|+++|+++|+++|+|++|.... + ..++
T Consensus 116 ~v~~v~~~~~-----~~----~~~~~t~lV~le~p~NPtg~v~---di~~I~~~a~~~g~~lvVD~t~~~~~-~--~~p~ 180 (366)
T PRK07582 116 TVREAPTAGM-----AE----AALAGADLVLAETPSNPGLDVC---DLAALAAAAHAAGALLVVDNTTATPL-G--QRPL 180 (366)
T ss_pred EEEEECCCCh-----HH----HhccCceEEEEECCCCCCCCcc---CHHHHHHHHHHcCCEEEEECCCCCcc-c--cCch
Confidence 9998887531 11 2335789999999999999776 57889999999999999999996321 1 1111
Q ss_pred cCCCCCCCceEEEccCChhh-ccccceeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHH
Q 013883 297 ASLPGMYERTVTMNSLGKTF-SLTGWKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYS 374 (434)
Q Consensus 297 ~~~~~~~~~~i~i~S~SK~~-g~~G~R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~ 374 (434)
.+ +..+++.|++|.+ |.+|.|+||++++ +++++.++..+......+++...+.+...|+. ++...++..
T Consensus 181 -~~----g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~t----l~~R~~~~~ 251 (366)
T PRK07582 181 -EL----GADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGT----LGLRFARQC 251 (366)
T ss_pred -hc----CCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccc----HHHHHHHHH
Confidence 11 2237889999998 4567899999984 77888888777666666677777666666664 333446666
Q ss_pred HHHHHHHHHhhhC
Q 013883 375 AKKAILVEGLNAV 387 (434)
Q Consensus 375 ~~~~~l~~~L~~~ 387 (434)
++...+.+.|++.
T Consensus 252 ~na~~la~~L~~~ 264 (366)
T PRK07582 252 ANALAVAELLAGH 264 (366)
T ss_pred HHHHHHHHHHHhC
Confidence 7777888888765
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-19 Score=174.33 Aligned_cols=217 Identities=15% Similarity=0.187 Sum_probs=159.0
Q ss_pred CCCCCCCCc---HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH----HH
Q 013883 140 NQYARGHGV---PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT----LS 212 (434)
Q Consensus 140 ~~Y~~~~G~---~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~ 212 (434)
+.|+. .|. ..|+++++++.+ .+ ++++++|+++|+..++.+++++||+|++++|.|+..... +.
T Consensus 42 ~~Y~r-~gnPt~~~lE~~lA~l~g--------~~-~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~ 111 (377)
T TIGR01324 42 LTYGR-RGTLTHFALQDAMCELEG--------GA-GCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLK 111 (377)
T ss_pred CcccC-CCCccHHHHHHHHHHHhC--------CC-cEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHH
Confidence 45664 344 478888888765 34 688999999999999999999999999999999876543 45
Q ss_pred HcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC
Q 013883 213 MAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD 292 (434)
Q Consensus 213 ~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~ 292 (434)
..|+++..++.. +.+.+++++++++|+|++++|+||+|.+. ++++|+++|+++|+++|+|++|...... .
T Consensus 112 ~~gi~v~~~d~~------~~e~l~~~i~~~tklV~lesp~Np~g~~~---dl~~I~~la~~~g~~livD~t~a~g~~~-~ 181 (377)
T TIGR01324 112 RMGVDITYYDPL------IGEDIATLIQPNTKVLFLEAPSSITFEIQ---DIPAIAKAARNPGIVIMIDNTWAAGLLF-K 181 (377)
T ss_pred hcCcEEEEECCC------CHHHHHHhcCCCceEEEEECCCCCCCcHH---HHHHHHHHHHHcCCEEEEECCCcccccc-C
Confidence 678888776432 23789999999999999999999998765 7889999999999999999999764321 1
Q ss_pred CccccCCCCCCCceEEEccCChhhc-cccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHH
Q 013883 293 HISIASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKR 371 (434)
Q Consensus 293 ~~~~~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~ 371 (434)
+ + ..+..+++.|++|.++ .++...|+++++++.++.++..........++...+.+...|+. +....+
T Consensus 182 --p---l--~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~t----l~~R~~ 250 (377)
T TIGR01324 182 --P---L--EHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRT----LGVRLK 250 (377)
T ss_pred --c---c--ccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhh----HHHHHH
Confidence 1 1 2345689999999995 33467899999988877776544433444455444444444442 334455
Q ss_pred HHHHHHHHHHHHhhhC
Q 013883 372 DYSAKKAILVEGLNAV 387 (434)
Q Consensus 372 ~~~~~~~~l~~~L~~~ 387 (434)
+..++...+.+.|++.
T Consensus 251 ~~~~~a~~la~~L~~~ 266 (377)
T TIGR01324 251 QHQESSLAIAKWLSEQ 266 (377)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 5666666677777654
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=178.25 Aligned_cols=210 Identities=17% Similarity=0.140 Sum_probs=154.7
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHH---HcCCEEEEEEc
Q 013883 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLS---MAGAKIKCITL 223 (434)
Q Consensus 147 G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~---~~G~~~~~v~~ 223 (434)
...+|++.++++++ .+ ++++++|+++|+..++.+++++||+|+++.|.|..+...++ ..|+++..+.
T Consensus 54 ~~~~lE~~lA~l~g--------~~-~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~- 123 (385)
T PRK08574 54 TLRPLEEALAKLEG--------GV-DALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY- 123 (385)
T ss_pred cHHHHHHHHHHHhC--------CC-cEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC-
Confidence 46789999999886 34 57778888999999999999999999999999999877664 4577776542
Q ss_pred CCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCC
Q 013883 224 RPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM 302 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~ 302 (434)
+|++.+++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|...... . .+ .
T Consensus 124 ------~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~~~-~--~l-----~ 186 (385)
T PRK08574 124 ------PSTEDIIEAIKEGRTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPLLY-R--PL-----R 186 (385)
T ss_pred ------CCHHHHHHhcCccCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccC-C--hh-----h
Confidence 367899999988 8999999999999999996 567899999999999999999643211 1 11 1
Q ss_pred CCceEEEccCChhhccccce-eeeEEe-ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 013883 303 YERTVTMNSLGKTFSLTGWK-IGWAIA-PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAIL 380 (434)
Q Consensus 303 ~~~~i~i~S~SK~~g~~G~R-~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l 380 (434)
.+..+++.|++|.++-+|-. .|++++ ++++.++++..+.......++...+.+...|+. +....++..++...+
T Consensus 187 ~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~t----L~~R~~~~~~na~~l 262 (385)
T PRK08574 187 HGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKT----LEVRFERQCRNAMAI 262 (385)
T ss_pred hCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc----HHHHHHHHHHHHHHH
Confidence 23468999999999755544 475555 677878777666654445555544444444443 344445556666777
Q ss_pred HHHhhhC
Q 013883 381 VEGLNAV 387 (434)
Q Consensus 381 ~~~L~~~ 387 (434)
.+.|++.
T Consensus 263 a~~L~~~ 269 (385)
T PRK08574 263 AEFLSEH 269 (385)
T ss_pred HHHHHcC
Confidence 7777654
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-19 Score=175.24 Aligned_cols=227 Identities=16% Similarity=0.145 Sum_probs=165.0
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCE-EEEEEcCC
Q 013883 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAK-IKCITLRP 225 (434)
Q Consensus 147 G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~-~~~v~~~~ 225 (434)
...+|+++++++.+ .+ ++++++|+++|+.+++. ++++||+|+++.+.|......+.....+ -+.+
T Consensus 55 ~~~~le~~lA~leg--------~~-~~v~~~sG~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~---- 120 (364)
T PRK07269 55 TRAKLEETLAAIES--------AD-YALATSSGMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHF---- 120 (364)
T ss_pred cHHHHHHHHHHHhC--------CC-eEEEeCCHHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHHHHHhcCcEEE----
Confidence 45789999999875 45 79999999999999884 6799999999999998765544332111 0111
Q ss_pred CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCc
Q 013883 226 PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYER 305 (434)
Q Consensus 226 ~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~ 305 (434)
++..|++.+++++++++|+|++++|+||||.+. ++++|+++|+++|+++|+|++|....+. .++. ..-
T Consensus 121 -~~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~---di~~I~~la~~~gi~vvvD~t~~~~~~~---~pl~-----~ga 188 (364)
T PRK07269 121 -TYANTEEELIAAIEEDTDIVYIETPTNPLMVEF---DIEKVAKLAHAKGAKVIVDNTFYSPIYQ---RPIE-----LGA 188 (364)
T ss_pred -EecCCHHHHHHhcCcCceEEEEECCCCCCCeee---CHHHHHHHHHHcCCEEEEECCCcccccC---Cchh-----hCC
Confidence 234589999999999999999999999999887 6778999999999999999997543221 1111 123
Q ss_pred eEEEccCChhhcccc-ceeeeEEe-ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 013883 306 TVTMNSLGKTFSLTG-WKIGWAIA-PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEG 383 (434)
Q Consensus 306 ~i~i~S~SK~~g~~G-~R~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~ 383 (434)
.+++.|++|.++-.| .=.|++++ ++++.++++..+.......+++..+.+...|+. ++...++..++...+.+.
T Consensus 189 Divv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~t----L~~r~~~~~~na~~~a~~ 264 (364)
T PRK07269 189 DIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKT----LSLRMERSTANAQEVVAF 264 (364)
T ss_pred cEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCc----HHHHHHHHHHHHHHHHHH
Confidence 488999999996323 13578887 467777777655444455666666666666664 555666777788888888
Q ss_pred hhhC-CC-Ee-ecCCeeEEEeee
Q 013883 384 LNAV-GF-KV-FPSSGTYFVVVD 403 (434)
Q Consensus 384 L~~~-g~-~~-~~~~~~~~~~~~ 403 (434)
|++. ++ +| +|+.||++.|.-
T Consensus 265 L~~~p~v~~v~ypg~gg~~sf~~ 287 (364)
T PRK07269 265 LKKSPAVKEVLYTGKGGMISFKV 287 (364)
T ss_pred HHhCCCccEEeCCCcCcEEEEEE
Confidence 8875 32 34 488889877653
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-18 Score=170.35 Aligned_cols=163 Identities=24% Similarity=0.335 Sum_probs=127.9
Q ss_pred CCCCCCCCcH---HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHH---HHHH
Q 013883 140 NQYARGHGVP---EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA---TLSM 213 (434)
Q Consensus 140 ~~Y~~~~G~~---~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~---~~~~ 213 (434)
+.|... |.+ +|++.++++.+ .+..+++++ +++|+..++.+++++||+|+++++.|+.+.. .+..
T Consensus 39 ~~Y~r~-g~p~~~~lE~~la~leg--------~~~~v~~ss-G~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~ 108 (397)
T PRK05939 39 FTYARQ-GTPTTAALEAKITKMEG--------GVGTVCFAT-GMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRG 108 (397)
T ss_pred CCcCCC-CCHHHHHHHHHHHHHhC--------CCeEEEeCC-HHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHh
Confidence 345543 545 77777777665 232455555 5899999999999999999999999986543 4667
Q ss_pred cCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCC
Q 013883 214 AGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH 293 (434)
Q Consensus 214 ~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~ 293 (434)
.|++++.++.. |++.+++++++++++|++++|+||||.+. ++++|+++|+++|+++|+|++|....
T Consensus 109 ~G~~v~~v~~~------d~e~l~~~l~~~tklV~vesp~NptG~v~---dl~~I~~la~~~gi~livD~t~a~~~----- 174 (397)
T PRK05939 109 LGVEVTMVDAT------DVQNVAAAIRPNTRMVFVETIANPGTQVA---DLAGIGALCRERGLLYVVDNTMTSPW----- 174 (397)
T ss_pred cCCEEEEECCC------CHHHHHHhCCCCCeEEEEECCCCCCCCHH---hHHHHHHHHHHcCCEEEEECCccccc-----
Confidence 89999888753 78999999999999999999999999885 78899999999999999999986421
Q ss_pred ccccCCCCCCCceEEEccCChhhccccceeeeEEeC
Q 013883 294 ISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP 329 (434)
Q Consensus 294 ~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~ 329 (434)
.+... ..+..+++.|++|.++..|.++|+++..
T Consensus 175 -~~~~~--~~gaDivv~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 175 -LFRPK--DVGASLVINSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred -ccCcc--ccCCEEEEecCeecccCCCCeEEEEEec
Confidence 01111 1246789999999998889999998874
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-18 Score=174.15 Aligned_cols=308 Identities=15% Similarity=0.116 Sum_probs=190.4
Q ss_pred CCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...|||..|. ..+. .+|.+.+++.+++.+..+ +.......+.+.++++.+.+..+.. -+ .+++++++++|++.
T Consensus 41 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~-~~~~~~~~~~~~~la~~L~~~~p~~--~~-~v~f~~sGsEAve~ 116 (443)
T PRK08360 41 NEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIH-YTPIYGFPVEPLLLAEKLIEIAPGD--NP-KVSFGLSGSDANDG 116 (443)
T ss_pred CEEEEccccHhhcccCCCCHHHHHHHHHHHHhccC-ccccccCcHHHHHHHHHHHHhCCCC--CC-EEEEcCCHHHHHHH
Confidence 3578887662 2222 367788899988876422 2222222345566777776544321 23 79999999999999
Q ss_pred HHHHcc--CCCCeEEEcCCCchhHHHH-HHHcCC------------EEEEEEcCCC---CCC--------CCHHHHHhhc
Q 013883 186 TILGLI--NPGDEVILFAPFYDSYEAT-LSMAGA------------KIKCITLRPP---DFA--------IPIEELKSTI 239 (434)
Q Consensus 186 ~~~~l~--~~gd~Vlv~~p~y~~~~~~-~~~~G~------------~~~~v~~~~~---~~~--------~d~~~l~~~i 239 (434)
+++... .....|+.....|++.... +...|. .+..+|+... .+. .+++.+++.+
T Consensus 117 AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (443)
T PRK08360 117 AIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKF 196 (443)
T ss_pred HHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHH
Confidence 987653 2345788888888775432 222221 1333333210 011 1244455655
Q ss_pred c-----cCCcEEEecCCCCCcccCCC-HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCC
Q 013883 240 S-----KNTRAILMNTPHNPTGKMFT-REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLG 313 (434)
Q Consensus 240 ~-----~~~~~i~~~~p~NPTG~~~~-~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~S 313 (434)
. +++++|++...+||+|.+++ .+.+++|.++|++||+++|+||+|.+|.+.+.......+.-.+| +.++|
T Consensus 197 ~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pD----iitls 272 (443)
T PRK08360 197 EGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPD----IITLG 272 (443)
T ss_pred HhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCC----EEEec
Confidence 3 35677777655799999877 55799999999999999999999999877665433333322233 33789
Q ss_pred hhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh----CCC
Q 013883 314 KTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA----VGF 389 (434)
Q Consensus 314 K~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~ 389 (434)
|.++ +|+|+||+++++++++.+.......+++.+++.+.++.++|+..++ +++.++.+++-+++++.|++ .++
T Consensus 273 K~l~-~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~ 349 (443)
T PRK08360 273 KPLG-GGLPISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEE--KNLLKRAEKLGNYTKKRLEEMKKKHEL 349 (443)
T ss_pred cccc-CCceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999 9999999999999988886554455778888889999888876321 12344444454555555443 332
Q ss_pred -EeecCCeeEEEeeecCCCC------CCCHHHHHHHHHHhcCeEEEC
Q 013883 390 -KVFPSSGTYFVVVDHTPFG------HETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 390 -~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Ll~~~GV~v~p 429 (434)
..+...|-++ -+.+.... ......++.++++ +||.+.+
T Consensus 350 v~~vrg~Gl~~-gie~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~ 394 (443)
T PRK08360 350 IGDVRGIGLMI-GVDLVKDRETKERAYEEAAKVVWRAWE-LGLIVTF 394 (443)
T ss_pred eeeeeccceEE-EEEEecCCcccCccHHHHHHHHHHHHH-CCeEEee
Confidence 2233444443 33332110 0112356666765 5999875
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-17 Score=166.68 Aligned_cols=203 Identities=16% Similarity=0.168 Sum_probs=146.5
Q ss_pred eEeCCCCCCCCCc-----HHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 112 INLGQGFPNFDGP-----DFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 112 i~l~~g~p~~~~~-----~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
..|+.|.|+.+.. ....+++.+.+..+...+++ -..+|+++++++++ .+ ++++++|+++++.++
T Consensus 26 ~~~~~~~~~ip~~~~~~~~~~~~a~~~~~~~~~~~~G~--~~~~fe~~lA~~~g--------~~-~~v~~~sGt~al~~a 94 (438)
T PRK15407 26 KPFVPGKSPIPPSGKVIDAKELQNLVDASLDFWLTTGR--FNDAFEKKLAEFLG--------VR-YALLVNSGSSANLLA 94 (438)
T ss_pred ccccCCCCCCCcCccCCCHHHHHHHHHHHHhCcccCCh--hHHHHHHHHHHHhC--------CC-eEEEECCHHHHHHHH
Confidence 3468888766542 22223344444443332322 24789999999986 34 688999999999988
Q ss_pred HHHc---------cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCccc
Q 013883 187 ILGL---------INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGK 257 (434)
Q Consensus 187 ~~~l---------~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~ 257 (434)
+.++ ++|||+|+++.|+|..+...+...|++++.++++.+++.+|++.+++++++++++|+++++ +|.
T Consensus 95 L~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~i~~~tkaVi~~~~---~G~ 171 (438)
T PRK15407 95 FSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVELPTYNIDASLLEAAVSPKTKAIMIAHT---LGN 171 (438)
T ss_pred HHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHcCcCCeEEEEeCC---CCC
Confidence 8875 4889999999999999999999999999999998768899999999999999999998754 554
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcCcCCccc-cCCCCccccCCCCCCCceEEEccCC--hhhccccceeeeEEeCh-hhH
Q 013883 258 MFTREELNVIASLCIENDVLVFSDEVYDKLA-FEMDHISIASLPGMYERTVTMNSLG--KTFSLTGWKIGWAIAPP-HLT 333 (434)
Q Consensus 258 ~~~~e~l~~i~~la~~~~~~iI~Deay~~~~-~~~~~~~~~~~~~~~~~~i~i~S~S--K~~g~~G~R~G~~~~~~-~~~ 333 (434)
.. ++++|.++|++||++||+|++|+... +.+. .+..+ + .+.+.||. |.+. .|. .|+++++. ++.
T Consensus 172 p~---dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~--~~G~~---g--d~~~fSf~~~k~~~-~ge-GG~l~t~d~~l~ 239 (438)
T PRK15407 172 PF---DLAAVKAFCDKHNLWLIEDNCDALGSTYDGR--MTGTF---G--DIATLSFYPAHHIT-MGE-GGAVFTNDPLLK 239 (438)
T ss_pred hh---hHHHHHHHHHHCCCEEEEECccchhhhcCCe--eeecc---C--ceEEEeCCCCCCcc-ccC-ceEEEECCHHHH
Confidence 33 68889999999999999999998654 2222 22222 2 24456664 7675 454 58888874 444
Q ss_pred HHHHHHh
Q 013883 334 WGVRQAH 340 (434)
Q Consensus 334 ~~l~~~~ 340 (434)
+.++..+
T Consensus 240 ~~~~~~~ 246 (438)
T PRK15407 240 KIIESFR 246 (438)
T ss_pred HHHHHHH
Confidence 4454443
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=172.76 Aligned_cols=250 Identities=17% Similarity=0.207 Sum_probs=170.9
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhH----HHHHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSY----EATLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~----~~~~~~~G~~~~~v~~ 223 (434)
..+|+++++++++ .+..+++ ++++.|+..++.+++++||+|+++.+.|... ...+...|++++.++.
T Consensus 65 ~~~le~~lA~l~g--------~~~av~~-~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (389)
T PRK05968 65 VRAFEEMLAKLEG--------AEDARGF-ASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDG 135 (389)
T ss_pred HHHHHHHHHHHhC--------CCcEEEE-CCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCC
Confidence 4578888888776 2224555 5557899999998999999999999999874 3456678999988864
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
. |++.+++++ +++++|++++|.||++ +..++++|+++|++||+++|+|++|....+.. ++. .
T Consensus 136 ~------d~~~l~~~i-~~tklV~ie~pt~~~~---~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~---p~~-~---- 197 (389)
T PRK05968 136 R------DEEAVAKAL-PGAKLLYLESPTSWVF---ELQDVAALAALAKRHGVVTMIDNSWASPVFQR---PIT-L---- 197 (389)
T ss_pred C------CHHHHHHhc-ccCCEEEEECCCCCCC---cHHHHHHHHHHHHHcCCEEEEECCCcchhccC---chh-c----
Confidence 3 789999988 5789999987666655 55789999999999999999999997654321 111 1
Q ss_pred CceEEEccCChhhcccc-ceeeeEEeChhhHHHHHHHhh-ccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQAHS-FLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILV 381 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~ 381 (434)
+..+++.|++|.++.+| .+.|+++++++++++++.... ......+...+..+...|+. +....++..++...+.
T Consensus 198 g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~t----l~~r~~~~~~~a~~la 273 (389)
T PRK05968 198 GVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRT----LPLRMKAHEASALEIA 273 (389)
T ss_pred CCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCc----HHHHHHHHHHHHHHHH
Confidence 23478889999997544 578999999998888776543 23344555555555444443 3444455566677777
Q ss_pred HHhhhC-CCE-eecC------------CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 382 EGLNAV-GFK-VFPS------------SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 382 ~~L~~~-g~~-~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
+.|++. ++. +..| .++++. +++.. +. +..+|+++| +..++.+.=|..
T Consensus 274 ~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~s-f~~~~-~~-~~~~f~~~L-~~~~~~~s~G~~ 334 (389)
T PRK05968 274 RRLKAHPVVERVCHPALANHPPAGLSGTSGLFS-FIFRE-GI-DVRAFADAL-KLFRLGVSWGGH 334 (389)
T ss_pred HHHHhCCCccEEECCCCCCChHHhCCCCceEEE-EEECC-HH-HHHHHHHhC-CccEEecCCCCC
Confidence 888775 443 3212 134443 33432 22 356777776 345766666654
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-18 Score=170.81 Aligned_cols=260 Identities=16% Similarity=0.211 Sum_probs=168.6
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH----HHHcC
Q 013883 140 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT----LSMAG 215 (434)
Q Consensus 140 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G 215 (434)
+.|... |.+. ++++.+.+.+..|. + +++++++++.++..++. ++++||+|+++++.|..+... +...|
T Consensus 39 ~~Y~r~-~~p~-~~~le~~la~l~g~----~-~~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G 110 (378)
T TIGR01329 39 YDYTRS-GNPT-RTALESLLAKLDKA----D-RAFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSG 110 (378)
T ss_pred CccCCC-CChH-HHHHHHHHHHHhCC----C-cEEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcC
Confidence 456654 3222 33444444443332 3 45666666789988776 789999999999999886553 45689
Q ss_pred CEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCcc
Q 013883 216 AKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHIS 295 (434)
Q Consensus 216 ~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~ 295 (434)
++++.++.. |++.+++++++++++|++++|+||||.+. ++++|+++|+++|+++|+|++|..... ..+
T Consensus 111 ~~v~~vd~~------d~~~le~~i~~~tklv~le~psnptg~v~---dl~~I~~la~~~g~~vivD~a~~~~~~---~~~ 178 (378)
T TIGR01329 111 VVVVHVDTT------DLDKVKAALGPKTKLVLLESPTNPLQKIV---DIRKISEMAHAQNALVVVDNTMMSPLL---CNP 178 (378)
T ss_pred cEEEEeCCC------CHHHHHHhcCcCceEEEEECCCCCCCeee---cHHHHHHHHHHcCCEEEEECCCccccc---CCh
Confidence 999988764 78999999999999999999999999988 478899999999999999999854221 111
Q ss_pred ccCCCCCCCceEEEccCChhhcc-ccceeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHH
Q 013883 296 IASLPGMYERTVTMNSLGKTFSL-TGWKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDY 373 (434)
Q Consensus 296 ~~~~~~~~~~~i~i~S~SK~~g~-~G~R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~ 373 (434)
+ .+ +-.+++.|++|.++- .|.+.|+++++ +++.++++..+.......++...+.+...|+. +....++.
T Consensus 179 l-~~----g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~t----l~~R~e~~ 249 (378)
T TIGR01329 179 L-EL----GADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKT----LAIRIEKQ 249 (378)
T ss_pred h-hc----CCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCC----HHHHHHHH
Confidence 1 11 234889999998852 34679999885 45556677666544444444444333333332 34444555
Q ss_pred HHHHHHHHHHhhhCC-C-Ee-ec----------------CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 374 SAKKAILVEGLNAVG-F-KV-FP----------------SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 374 ~~~~~~l~~~L~~~g-~-~~-~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
.++...+.+.|++.. + ++ ++ ..++++.| .+. +.....+|+..| +..++.++-|..
T Consensus 250 ~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf-~~~--~~~~~~~~~~~L-~~~~i~~s~G~~ 323 (378)
T TIGR01329 250 QENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSF-ETG--SVALSKRLVEAT-KLFSITVSFGSV 323 (378)
T ss_pred HHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEE-EEC--CHHHHHHHHHhC-cCcccccCCCCC
Confidence 555666666665431 1 11 11 12344443 331 222255777777 667888777764
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-18 Score=168.17 Aligned_cols=287 Identities=15% Similarity=0.085 Sum_probs=176.5
Q ss_pred CeeEeCCC-CCCCCCcHHHHHHHHHHHHcCC--------CCCCC--CCC----cHHHHHHHHHHHHhhcCCCCCCCCcEE
Q 013883 110 GAINLGQG-FPNFDGPDFVKDAAIQAIRDGK--------NQYAR--GHG----VPEFNSAIASRFKKDSGLEVDPEKEVT 174 (434)
Q Consensus 110 ~~i~l~~g-~p~~~~~~~v~~~~~~~~~~~~--------~~Y~~--~~G----~~~lr~~ia~~l~~~~g~~~~~~~~i~ 174 (434)
..|||+.. |.++...+.+.+++.+++.... +..+. ..| +.++++.++++++ . ++ .++
T Consensus 5 ~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~----~---~~-~l~ 76 (370)
T PRK05937 5 LSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHG----A---PE-AFI 76 (370)
T ss_pred ceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhC----C---Ce-EEE
Confidence 67899886 9999999999999988876531 11111 112 3466777777665 2 23 577
Q ss_pred EcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc------CCcEEEe
Q 013883 175 VTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK------NTRAILM 248 (434)
Q Consensus 175 ~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~i~~ 248 (434)
+++|. .++..++..+.++||.|++..-.|......+.......+.++ ..|++.+++.++. ++++|++
T Consensus 77 ~~sG~-~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~------~~d~~~l~~~l~~~~~~~~~~~~v~v 149 (370)
T PRK05937 77 VPSGY-MANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFR------HNDLDHLESLLESCRQRSFGRIFIFV 149 (370)
T ss_pred ECChH-HHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEec------CCCHHHHHHHHHhhhccCCCcEEEEE
Confidence 77776 555555666667888888878888877777776554444443 2478999988863 3556678
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEe
Q 013883 249 NTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA 328 (434)
Q Consensus 249 ~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~ 328 (434)
++++|++|.+.| +++|.++|+++|+++++||+|....++.+...+....+..+..+.+.||||.+|..| .| +++
T Consensus 150 ~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G--~~-vl~ 223 (370)
T PRK05937 150 CSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMG--AA-LLS 223 (370)
T ss_pred ecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCc--eE-EEc
Confidence 899999999997 667888899999999999999864443222111111111122367889999999667 33 455
Q ss_pred ChhhHHHHHHHhhcc--ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCC
Q 013883 329 PPHLTWGVRQAHSFL--TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTP 406 (434)
Q Consensus 329 ~~~~~~~l~~~~~~~--~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 406 (434)
.+++...+....... ..+.+.+...++..+++...+..+..++++++.++++.+.|...+... .. .+.+ .
T Consensus 224 ~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~~~~~----~~-~i~~--~- 295 (370)
T PRK05937 224 SSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSAAPGC----VQ-PIFL--P- 295 (370)
T ss_pred CHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCCCCCC----EE-EEEe--C-
Confidence 566555444222111 233455555555555543211123456677778888888776432110 01 1222 1
Q ss_pred CCCCCHHHHHHHHHHhcCeEEE
Q 013883 407 FGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 407 ~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
+. ...++.+.| +++||.+.
T Consensus 296 -~~-~~~~~~~~L-~~~gi~v~ 314 (370)
T PRK05937 296 -GI-SEQELYSKL-VETGIRVG 314 (370)
T ss_pred -Ch-hHHHHHHHH-HHCCeeEE
Confidence 11 345666666 45599886
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=165.33 Aligned_cols=290 Identities=19% Similarity=0.171 Sum_probs=202.9
Q ss_pred CCCcHHHHHHHHHHHHcC--CCCCCCCCC------cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc--
Q 013883 121 FDGPDFVKDAAIQAIRDG--KNQYARGHG------VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL-- 190 (434)
Q Consensus 121 ~~~~~~v~~~~~~~~~~~--~~~Y~~~~G------~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l-- 190 (434)
-+..+.+.+++...+... +..-....| +.+-|+.+|+.++ ++++ +|++|+|++|+..+++...
T Consensus 11 Tp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llg------a~~~-eIiFTSG~TEsnNlaI~g~~~ 83 (386)
T COG1104 11 TPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLG------ADPE-EIIFTSGATESNNLAIKGAAL 83 (386)
T ss_pred CCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhC------CCCC-eEEEecCCcHHHHHHHHhhHH
Confidence 345677888887777653 100011123 4466777777776 6776 8999999999999998873
Q ss_pred c----CCCCeEEEcCCCchhHHHHHHHc---CCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHH
Q 013883 191 I----NPGDEVILFAPFYDSYEATLSMA---GAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREE 263 (434)
Q Consensus 191 ~----~~gd~Vlv~~p~y~~~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~ 263 (434)
. +.|..|++..--++...+.++.+ |.+|.++|.+. ++.+|++.|+++++++|.+|-+...||.||++.|
T Consensus 84 a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~-~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQp--- 159 (386)
T COG1104 84 AYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDS-NGLVDLEQLEEALRPDTILVSIMHANNETGTIQP--- 159 (386)
T ss_pred hhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCC-CCeEcHHHHHHhcCCCceEEEEEecccCeeeccc---
Confidence 2 24678999988999888777766 99999999986 7899999999999999999999999999999986
Q ss_pred HHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHH--H---HH
Q 013883 264 LNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG--V---RQ 338 (434)
Q Consensus 264 l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~--l---~~ 338 (434)
+++|.++|+++++++.+|.++... .-+..+..+ .-.+...|-.|..|..| +|.++.++.+.-. + -+
T Consensus 160 I~ei~~i~k~~~i~fHvDAvQa~G---kipi~~~~~----~vD~ls~SaHK~~GpkG--iGaLyv~~~~~~~p~i~GGgQ 230 (386)
T COG1104 160 IAEIGEICKERGILFHVDAVQAVG---KIPIDLEEL----GVDLLSFSAHKFGGPKG--IGALYVRPGVRLEPLIHGGGQ 230 (386)
T ss_pred HHHHHHHHHHcCCeEEEehhhhcC---ceecccccc----CcceEEeehhhccCCCc--eEEEEECCCCccCceeccCcC
Confidence 566899999999999999998752 112222221 12355667779999777 8998886544211 1 01
Q ss_pred HhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC--CCEeecCC---eeEEEeeecCCCCCCCHH
Q 013883 339 AHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV--GFKVFPSS---GTYFVVVDHTPFGHETDI 413 (434)
Q Consensus 339 ~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~---~~~~~~~~~~~~~~~~~~ 413 (434)
-+.....+.+.++..++..+++...+.++....+++..|+.|.+.|.+. ++.+.... -...+.+.++ +. ..+
T Consensus 231 E~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~--gv-~gE 307 (386)
T COG1104 231 ERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFP--GV-EGE 307 (386)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeC--CC-cHH
Confidence 1111234556667777777777655567777888999999999999874 33333221 1112223332 12 355
Q ss_pred HHHHHHHHhcCeEEECCCCCC
Q 013883 414 AFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 414 ~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
.+...| +.+||++..|+.|.
T Consensus 308 ~ll~~L-~~~gI~vStGSACs 327 (386)
T COG1104 308 SLLLAL-DLAGIAVSTGSACS 327 (386)
T ss_pred HHHHhc-cccCeEEecccccc
Confidence 665554 77899999999873
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-18 Score=173.15 Aligned_cols=313 Identities=15% Similarity=0.128 Sum_probs=193.9
Q ss_pred cCCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...||+..|. ..+. .+|.+.+++.+++.+.. .+.......+.+..+++.+.+..+... .+ .+++++++++|++
T Consensus 55 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-~~~~~~~~~~~~~~la~~l~~~~p~~~-~~-~v~f~~sGseA~e 131 (443)
T PRK06058 55 GNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFT-HTCFMVTPYEGYVAVAEQLNRLTPGDH-EK-RSALFNSGAEAVE 131 (443)
T ss_pred CCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhcc-CccccccCCHHHHHHHHHHHHhCCCCC-CC-EEEEeCCcHHHHH
Confidence 34578887663 2222 36788899999887632 222222234666777887776543211 13 6888888899999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHHHc-CC-------------EEEEEEcCC--CC---CCC--------CHHHH
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLSMA-GA-------------KIKCITLRP--PD---FAI--------PIEEL 235 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~--~~---~~~--------d~~~l 235 (434)
.+++... ...++|+...+.|++........ +. .+..+|+.. .+ ... .++.+
T Consensus 132 ~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 211 (443)
T PRK06058 132 NAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVI 211 (443)
T ss_pred HHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHH
Confidence 9987432 23478999999999876554332 11 122222211 00 000 12334
Q ss_pred Hhhcc-cCCcEEEecCCCCCc-ccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccC
Q 013883 236 KSTIS-KNTRAILMNTPHNPT-GKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSL 312 (434)
Q Consensus 236 ~~~i~-~~~~~i~~~~p~NPT-G~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~ 312 (434)
++.+. +++.+|+ ..|.+.. |+. ++.+.+++|.++|++||+++|.||++.+|.+.|.......+.-.+| +.++
T Consensus 212 ~~~~~~~~iAavi-~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PD----iv~~ 286 (443)
T PRK06058 212 EKQVGADNLAAVI-IEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPD----LITT 286 (443)
T ss_pred HHhhCCCceEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCC----EEEE
Confidence 44443 3455555 4565555 554 4678899999999999999999999999876665443333322233 3456
Q ss_pred ChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC----C
Q 013883 313 GKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV----G 388 (434)
Q Consensus 313 SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g 388 (434)
+|.+| .|+++|++++++++.+.+.......+++.+++++.++.++|+..++ +++.++.+++.+++.+.|+++ +
T Consensus 287 gK~l~-~G~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~L~~l~~~~~ 363 (443)
T PRK06058 287 AKGIA-GGLPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEE--DDLVARARQIEALMTDRLRALAAEDD 363 (443)
T ss_pred ccccc-CCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 89999 8999999999999988776555556889999999999999975321 234566666667777777653 3
Q ss_pred C-EeecCCeeEEEeeecCCCCCCC----HHHHHHHHHHhcCeEEECCCC
Q 013883 389 F-KVFPSSGTYFVVVDHTPFGHET----DIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 389 ~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
+ .-+...|.|+.+.-..+....+ ...+.+.+++ +||.+.|+..
T Consensus 364 ~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~-~Gv~~~~~~~ 411 (443)
T PRK06058 364 RIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHA-AGVIVLTCGT 411 (443)
T ss_pred cEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHH-CCeEEeccCC
Confidence 2 2245666665443222111111 2234455544 5999998643
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-18 Score=171.52 Aligned_cols=211 Identities=16% Similarity=0.168 Sum_probs=154.9
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH----HHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT----LSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~ 223 (434)
..+|++.++++.+ .+ ..++++++++|+.+++.+++++||+|+++.++|.+.... +..+|+++..+.
T Consensus 63 v~~lE~~la~leg--------~~-~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd- 132 (432)
T PRK06702 63 LAAFEQKLAELEG--------GV-GAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFN- 132 (432)
T ss_pred HHHHHHHHHHHhC--------CC-cEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEEC-
Confidence 4577777777765 23 578899999999999999999999999999999876665 677899998884
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
..+|++.++++++++||+|++++|.||++.+++ +++|+++|++||+++|+|++|..- .+.. +-..
T Consensus 133 ----~~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP-------~~~~-pl~~ 197 (432)
T PRK06702 133 ----PNLTADEIVALANDKTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATP-------YLCQ-AFEH 197 (432)
T ss_pred ----CCCCHHHHHHhCCcCCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCch-------hhCC-hhhc
Confidence 346899999999999999999999999999985 788999999999999999998421 1111 1122
Q ss_pred CceEEEccCCh-----hhcccccee-----eeEEeC-hhhH---------------------HHHH-HHhhccccCCchH
Q 013883 304 ERTVTMNSLGK-----TFSLTGWKI-----GWAIAP-PHLT---------------------WGVR-QAHSFLTFATSTP 350 (434)
Q Consensus 304 ~~~i~i~S~SK-----~~g~~G~R~-----G~~~~~-~~~~---------------------~~l~-~~~~~~~~~~~~~ 350 (434)
+-.|++.|+|| ..+++|.++ +|...+ .+++ .+.+ ...+....+.+++
T Consensus 198 GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~ 277 (432)
T PRK06702 198 GANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPF 277 (432)
T ss_pred CCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHH
Confidence 34599999999 667777776 454432 1111 1111 1222334577777
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC
Q 013883 351 MQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 351 ~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (434)
..+.+...|+. ++...++..++...+.+.|++.
T Consensus 278 ~a~l~~rgL~T----l~lR~~r~~~Na~~la~~L~~~ 310 (432)
T PRK06702 278 NAYISNIGLET----LHLRMERHSENALAVAKWLADH 310 (432)
T ss_pred HHHHHHhccCc----HHHHHHHHHHHHHHHHHHHHhC
Confidence 77777777775 3334455567777888888765
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=165.60 Aligned_cols=265 Identities=14% Similarity=0.138 Sum_probs=187.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH-HHHHHHHHHccC---CCCeEEEcCCCchhHHHHHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT-EAIAATILGLIN---PGDEVILFAPFYDSYEATLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~-~ai~~~~~~l~~---~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~ 223 (434)
...+...+.+.+.+..|..- .+ ..++++|++ .++.+++.++-. +||+|+++.-+|......+..+|++++.++.
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~-~~-~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~ 180 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRS-IK-SAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIET 180 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCC-CC-EEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeee
Confidence 45666666666666667531 12 577788888 688878777652 5899999999999999999999999999995
Q ss_pred --CCCCCCCCHHHHHhhccc---CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccC
Q 013883 224 --RPPDFAIPIEELKSTISK---NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIAS 298 (434)
Q Consensus 224 --~~~~~~~d~~~l~~~i~~---~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~ 298 (434)
+++++.+|++.++++|++ +.+++++.+|+ |+.....+++++|+++|++||+++|+|++|..... ....
T Consensus 181 ~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~-----~~~~ 253 (444)
T TIGR03531 181 VLDGDELTTDVEDIERAIEEIGPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSN-----KYME 253 (444)
T ss_pred eecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcCh-----hhhh
Confidence 556799999999999986 45566666665 55555667899999999999999999999985321 1111
Q ss_pred C--CCC-C-CceEEEccCChhhccccceeeeEEe-ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHH
Q 013883 299 L--PGM-Y-ERTVTMNSLGKTFSLTGWKIGWAIA-PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDY 373 (434)
Q Consensus 299 ~--~~~-~-~~~i~i~S~SK~~g~~G~R~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~ 373 (434)
+ .+. . .-.+++.|++|.+.++|+ .|+++. ++++++.++.... ....+.+.+.+...++..+.+.++++.+++
T Consensus 254 ~~~~g~~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~y~--g~~~~s~~~~~~~~ll~~G~~g~~~li~~~ 330 (444)
T TIGR03531 254 LINKAIKVGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKSYP--GRASASPSLDVLITLLSLGSKGYLELLKER 330 (444)
T ss_pred hhhccccccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHhcc--CCCCChHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 1 010 1 124678899999988776 455546 6778777766432 233456778888888888888899999999
Q ss_pred HHHHHHHHHHhhhC----CCEeecCCeeE-EEeeecCCCCCCCHHHHHHHHHHhcCe
Q 013883 374 SAKKAILVEGLNAV----GFKVFPSSGTY-FVVVDHTPFGHETDIAFCEYLIKEVGV 425 (434)
Q Consensus 374 ~~~~~~l~~~L~~~----g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Ll~~~GV 425 (434)
.++++++.+.|+++ |..+.....+. .+.+.+......+...+...|..+ +|
T Consensus 331 ~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~~~~~~~~g~~l~~~-~v 386 (444)
T TIGR03531 331 KEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLKGKDPTMLGSMLYSR-RV 386 (444)
T ss_pred HHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEecccccccCHHHHHHHHHhC-CC
Confidence 99999999998764 77776543333 233333222122455666666544 55
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=172.77 Aligned_cols=156 Identities=21% Similarity=0.293 Sum_probs=125.6
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhH----HHHHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSY----EATLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~----~~~~~~~G~~~~~v~~ 223 (434)
...|.+.++++.+ .+ ..++++++++|+..++.+++++||+|+++.+.|+.. ...+...|++++.++.
T Consensus 66 ~~~Le~~lA~leg--------~~-~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~ 136 (431)
T PRK08248 66 TDVFEKRIAALEG--------GI-GALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP 136 (431)
T ss_pred HHHHHHHHHHHhC--------CC-cEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECC
Confidence 3567777777664 33 577888889999999999999999999999988763 3456678999998875
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
. |++.+++++++++++|++++|+||||.+++ +++|+++|+++|+++|+|++|..-. ...+ + ..
T Consensus 137 ~------d~e~l~~ai~~~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~~~---~~~p---l--~~ 199 (431)
T PRK08248 137 S------DPENFEAAITDKTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFASPY---LLRP---I--EH 199 (431)
T ss_pred C------CHHHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCccc---cCCh---h--Hc
Confidence 3 789999999999999999999999999996 5678999999999999999986311 1111 1 23
Q ss_pred CceEEEccCChhhccccceeeeEEeC
Q 013883 304 ERTVTMNSLGKTFSLTGWKIGWAIAP 329 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G~R~G~~~~~ 329 (434)
+..+++.|++|.+|.+|.++|++++.
T Consensus 200 gaDivv~S~tK~lgg~g~~~Gg~v~~ 225 (431)
T PRK08248 200 GADIVVHSATKFIGGHGTSIGGVIVD 225 (431)
T ss_pred CCCEEEEcCccccCCCCCceEEEEEe
Confidence 45688999999999899999887773
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-18 Score=170.21 Aligned_cols=209 Identities=19% Similarity=0.231 Sum_probs=149.4
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhH----HHHHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSY----EATLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~----~~~~~~~G~~~~~v~~ 223 (434)
..+|++.++++.+ . +. .+++++| +.++.+++. ++++||+|++++|.|++. ...+...|++++.++.
T Consensus 56 ~~~le~~lA~l~g------~-~~-~v~~~sG-~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 125 (390)
T PRK08064 56 REALEDIIAELEG------G-TK-GFAFASG-MAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDM 125 (390)
T ss_pred HHHHHHHHHHHhC------C-CC-eEEECCH-HHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECC
Confidence 4577888888765 2 23 5766666 678887776 789999999999988743 3455678999999876
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
. |++.+++++++++++|++++|+||||.+. ++++|.++|+++|+++|+|++|..+... ..+ . .
T Consensus 126 ~------d~~~l~~~l~~~tklV~l~~p~NptG~~~---dl~~I~~la~~~g~~vvvD~a~~~~~~~---~~~-~----~ 188 (390)
T PRK08064 126 T------NLEEVAQNIKPNTKLFYVETPSNPLLKVT---DIRGVVKLAKAIGCLTFVDNTFLTPLLQ---KPL-D----L 188 (390)
T ss_pred C------CHHHHHHhcCCCceEEEEECCCCCCcEec---cHHHHHHHHHHcCCEEEEECCCCccccc---Cch-h----h
Confidence 4 68999999999999999999999999998 4677888999999999999999764321 111 1 2
Q ss_pred CceEEEccCChhhc-cccceeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFS-LTGWKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILV 381 (434)
Q Consensus 304 ~~~i~i~S~SK~~g-~~G~R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~ 381 (434)
+..+++.|++|.++ .+|...|++++. +++++.++..+.......++...+. ++.. .+.+....++..++...+.
T Consensus 189 g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l---~~~g-l~tl~~R~~~~~~~a~~la 264 (390)
T PRK08064 189 GADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWL---VLRG-LKTLHVRLEHSSETANKIA 264 (390)
T ss_pred CCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH---HHcc-cCcHHHHHHHHHHHHHHHH
Confidence 34588999999985 334556877764 6788888877654333333333332 3332 2224455566677777777
Q ss_pred HHhhhC
Q 013883 382 EGLNAV 387 (434)
Q Consensus 382 ~~L~~~ 387 (434)
+.|++.
T Consensus 265 ~~L~~~ 270 (390)
T PRK08064 265 LYLQEH 270 (390)
T ss_pred HHHhcC
Confidence 777764
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-17 Score=165.82 Aligned_cols=310 Identities=13% Similarity=0.091 Sum_probs=189.4
Q ss_pred CCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...||+..|.- .+. .+|.+.+++.+++.+..+. .......+....+++.+.+..+... .+ .+++++++++|++.
T Consensus 40 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~-~~~~~~~~~~~~la~~l~~~~p~~~-~~-~v~f~~SGseA~e~ 116 (425)
T PRK07495 40 RRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHT-CHQVVPYENYVRLAERLNALVPGDF-AK-KTIFVTTGAEAVEN 116 (425)
T ss_pred CEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCc-ccCccCCHHHHHHHHHHHHhCCCCC-CC-EEEECCchHHHHHH
Confidence 35788876632 222 4677888999888763321 1111123445556666665432111 14 79999999999999
Q ss_pred HHHHcc--CCCCeEEEcCCCchhHHHHHHH-cCC-------------EEEEEEcCCCCCCCC----HHHHHhhcc-----
Q 013883 186 TILGLI--NPGDEVILFAPFYDSYEATLSM-AGA-------------KIKCITLRPPDFAIP----IEELKSTIS----- 240 (434)
Q Consensus 186 ~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~G~-------------~~~~v~~~~~~~~~d----~~~l~~~i~----- 240 (434)
+++... ....+|+.....|++....... .|. .+..+|+.....+.+ ++.+++.+.
T Consensus 117 AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~ 196 (425)
T PRK07495 117 AVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDP 196 (425)
T ss_pred HHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCC
Confidence 987553 2346788888888886433221 111 233344432111222 455566653
Q ss_pred cCCcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccc
Q 013883 241 KNTRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLT 319 (434)
Q Consensus 241 ~~~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 319 (434)
.+..+|++...+.-+|. .+|.+.+++|.++|++||+++|+||+|.+|.+.|........ +.+..+.+|||.++ +
T Consensus 197 ~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~----gv~pDi~tlsK~l~-~ 271 (425)
T PRK07495 197 QRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHH----EVAADLTTMAKGLA-G 271 (425)
T ss_pred CceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeeccc----CCCCCEEeehhhhc-C
Confidence 24556666533333784 578999999999999999999999999998766653333222 23345889999999 8
Q ss_pred cceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh----CCCEeecCC
Q 013883 320 GWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA----VGFKVFPSS 395 (434)
Q Consensus 320 G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~ 395 (434)
|+|+|++++++++.+.+.......+++.+++.++++.++|+..++ .++.++.+++.+.+++.|++ .+.......
T Consensus 272 G~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG 349 (425)
T PRK07495 272 GFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEE--EDLCERANQLGNRLKQRLASLRETVPEIADIRG 349 (425)
T ss_pred CccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHhhCCCeeeeec
Confidence 999999999999987775544556888899999977777764211 12334444444445444443 222111222
Q ss_pred eeEEEeeecCCCCC-CC----HHHHHHHHHHhcCeEEEC
Q 013883 396 GTYFVVVDHTPFGH-ET----DIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 396 ~~~~~~~~~~~~~~-~~----~~~~~~~Ll~~~GV~v~p 429 (434)
-|+++|+.+.+... .. ...+.+.+++ .||++.+
T Consensus 350 ~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~ 387 (425)
T PRK07495 350 PGFMNAVEFNDADSGLPSAEFANRVRLKALE-KGLILLT 387 (425)
T ss_pred CceEEEEEEecCCCCCccHHHHHHHHHHHHH-CCeEEee
Confidence 37778887643210 11 2345555555 5999876
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-18 Score=169.36 Aligned_cols=221 Identities=16% Similarity=0.219 Sum_probs=156.5
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHH----HHHH
Q 013883 138 GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA----TLSM 213 (434)
Q Consensus 138 ~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~ 213 (434)
..+.|... |.+ .++++.+.+.+..| .+ ..++++++++++.+++ .++++||+|++++|.|..+.. .+..
T Consensus 123 ~~~~Y~r~-gnp-t~~aLE~~lA~leg----~e-~ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~ 194 (464)
T PLN02509 123 GPYDYTRS-GNP-TRDALESLLAKLDK----AD-RAFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPR 194 (464)
T ss_pred CCCccCCC-CCH-HHHHHHHHHHHHhC----CC-EEEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHH
Confidence 34668776 654 57777777776654 34 5667777788987655 578999999999999998764 3456
Q ss_pred cCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCC
Q 013883 214 AGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH 293 (434)
Q Consensus 214 ~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~ 293 (434)
.|++++.++.. |++.+++++++++++|++++|+||||.+ .++++|+++|++||+++|+|++|...... .
T Consensus 195 ~G~~v~~vd~~------d~e~l~~ai~~~TklV~lesPsNPtG~i---~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~-~- 263 (464)
T PLN02509 195 SGVVVKRVNTT------NLDEVAAAIGPQTKLVWLESPTNPRQQI---SDIRKIAEMAHAQGALVLVDNSIMSPVLS-R- 263 (464)
T ss_pred CCeEEEEeCCC------CHHHHHHhCCcCCeEEEEECCCCCCCCH---HHHHHHHHHHHHcCCEEEEECCccccccC-C-
Confidence 79998877543 6899999999999999999999999986 47899999999999999999998654321 1
Q ss_pred ccccCCCCCCCceEEEccCChhhcccc-ceeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHH
Q 013883 294 ISIASLPGMYERTVTMNSLGKTFSLTG-WKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKR 371 (434)
Q Consensus 294 ~~~~~~~~~~~~~i~i~S~SK~~g~~G-~R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~ 371 (434)
.+ ..+..+++.|++|.++-+| .-.|+++++ +.+...++..+.......++...+.+...|+ .+....+
T Consensus 264 -pl-----~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~----tL~~R~~ 333 (464)
T PLN02509 264 -PL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIK----TMALRIE 333 (464)
T ss_pred -hh-----hcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhhh----hHHHHHH
Confidence 11 1233588999999986323 236777765 4444555544443333344444443333333 3555667
Q ss_pred HHHHHHHHHHHHhhhC
Q 013883 372 DYSAKKAILVEGLNAV 387 (434)
Q Consensus 372 ~~~~~~~~l~~~L~~~ 387 (434)
+..++...+.+.|++.
T Consensus 334 r~~~nA~~la~~L~~~ 349 (464)
T PLN02509 334 KQQENARKIAMYLSSH 349 (464)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 7777888888888764
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-18 Score=167.28 Aligned_cols=220 Identities=15% Similarity=0.185 Sum_probs=155.4
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHH----HHHHcC
Q 013883 140 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA----TLSMAG 215 (434)
Q Consensus 140 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G 215 (434)
+.|.. +..+.++.+++.+....+ .++ .+++++ +++|+..++.+++++||.|++++|.|+++.. .++..|
T Consensus 56 y~YsR--~gnPt~~~Le~~la~le~---~~~-~v~~sS-G~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~G 128 (395)
T PRK05967 56 YTYGT--RGTPTTDALCKAIDALEG---SAG-TILVPS-GLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLG 128 (395)
T ss_pred CccCC--CCChHHHHHHHHHHHHhC---CCC-EEEECc-HHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcC
Confidence 44653 334556666666654433 233 555555 6899999999999999999999999999765 457789
Q ss_pred CEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCcc
Q 013883 216 AKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHIS 295 (434)
Q Consensus 216 ~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~ 295 (434)
+++..++.. +.+.+++++++++|+|++++|+||++. ..++++|+++|+++|+++|+|++|....+.
T Consensus 129 i~v~~vd~~------~~e~l~~al~~~TklV~lesPsNP~l~---v~dl~~I~~la~~~g~~vvVD~t~a~p~~~----- 194 (395)
T PRK05967 129 VEVEYYDPE------IGAGIAKLMRPNTKVVHTEAPGSNTFE---MQDIPAIAEAAHRHGAIVMMDNTWATPLYF----- 194 (395)
T ss_pred eEEEEeCCC------CHHHHHHhcCcCceEEEEECCCCCCCc---HHHHHHHHHHHHHhCCEEEEECCccCceec-----
Confidence 998887543 357899999999999999999999874 458999999999999999999999764321
Q ss_pred ccCCCCCCCceEEEccCChhhc-cccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHH
Q 013883 296 IASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYS 374 (434)
Q Consensus 296 ~~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~ 374 (434)
..+ ..+-.+++.|.+|.++ -.+..+|+++.+++..+++...........++...+.+..-|+. +.-..++..
T Consensus 195 -~pl--~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~T----l~lR~~~~~ 267 (395)
T PRK05967 195 -RPL--DFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRT----MGIRLEHHR 267 (395)
T ss_pred -Chh--HcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHcCCCCCHHHHHHHHcCccc----HHHHHHHHH
Confidence 111 1234589999999974 34567898888887766666555444444555544443333333 344445556
Q ss_pred HHHHHHHHHhhhC
Q 013883 375 AKKAILVEGLNAV 387 (434)
Q Consensus 375 ~~~~~l~~~L~~~ 387 (434)
++...+.+.|++.
T Consensus 268 ~na~~lA~~L~~h 280 (395)
T PRK05967 268 KSALEIARWLEGR 280 (395)
T ss_pred HHHHHHHHHHHhC
Confidence 6667777777764
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6e-18 Score=167.29 Aligned_cols=209 Identities=21% Similarity=0.254 Sum_probs=148.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHH----HHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA----TLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~v~~ 223 (434)
..+|++.++++.+ . +. .+++++| +.++..++ .++++||+|++++|.|++... .+...|++++.++.
T Consensus 52 ~~~Le~~lA~l~g------~-~~-~~~~~sG-~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 121 (377)
T PRK07671 52 RAALEELIAVLEG------G-HA-GFAFGSG-MAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDT 121 (377)
T ss_pred HHHHHHHHHHHhC------C-Cc-eEEeCCH-HHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECC
Confidence 4577777777765 1 22 5666666 56777655 578999999999999985433 34457999888864
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
. |++.+++++++++++|++++|+||||.+. ++++|.++|+++|+++|+|++|....+. . .+ . .
T Consensus 122 ~------d~~~l~~ai~~~tklV~le~P~NPtg~~~---dl~~I~~la~~~g~~lvvD~a~~~~~~~-~--p~-~----~ 184 (377)
T PRK07671 122 S------NLEEVEEAIRPNTKAIYVETPTNPLLKIT---DIKKISTIAKEKGLLTIVDNTFMTPYWQ-S--PI-S----L 184 (377)
T ss_pred C------CHHHHHHhcCCCCeEEEEECCCCCCCccc---CHHHHHHHHHHcCCEEEEECCCCccccC-C--hh-h----h
Confidence 3 78999999999999999999999999887 5777888999999999999999753322 1 11 1 1
Q ss_pred CceEEEccCChhhcccc-ceeeeEEe-ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSLTG-WKIGWAIA-PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILV 381 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G-~R~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~ 381 (434)
+..+++.|++|.++-++ .-.|++++ +++++++++..+.......+....+.+...|+ .+....++..++...+.
T Consensus 185 g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~----tl~~R~~~~~~na~~la 260 (377)
T PRK07671 185 GADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLK----TLGIRMEEHETNSRAIA 260 (377)
T ss_pred CCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcC----hHHHHHHHHHHHHHHHH
Confidence 33589999999997332 24566666 46787888777765444444444443333332 24455666777888888
Q ss_pred HHhhhC
Q 013883 382 EGLNAV 387 (434)
Q Consensus 382 ~~L~~~ 387 (434)
+.|++.
T Consensus 261 ~~L~~~ 266 (377)
T PRK07671 261 EFLNNH 266 (377)
T ss_pred HHHHcC
Confidence 888764
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-17 Score=165.33 Aligned_cols=309 Identities=14% Similarity=0.113 Sum_probs=185.5
Q ss_pred cCCeeEeCCCCCC--CC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhc--CCCCCCCCcEEE-cCChHH
Q 013883 108 KHGAINLGQGFPN--FD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDS--GLEVDPEKEVTV-TSGCTE 181 (434)
Q Consensus 108 ~~~~i~l~~g~p~--~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~--g~~~~~~~~i~~-t~G~~~ 181 (434)
+...|||..|.-. +. .+|.+.+++++++.+....+... ...+.+..+++.+.+.. +... .+ .+++ ++++++
T Consensus 34 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~-~~~~~~~~lae~l~~~~~~~~~~-~~-~~~f~~~sGse 110 (412)
T TIGR02407 34 GKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHSLD-MATEAKREFLETFNEIILKPRGL-DY-KVQFPGPTGTN 110 (412)
T ss_pred CCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccceeccc-cCcHHHHHHHHHHHHhccCccCC-Cc-eEEEeCCCchH
Confidence 3357888766322 22 36788899988887522211111 12345556666665432 1111 12 3555 588899
Q ss_pred HHHHHHHHcc--CCCCeEEEcCCCchhHHHHHHH-cCC------------EEEEEEcCC-CCC-CCCHHHHHhhccc---
Q 013883 182 AIAATILGLI--NPGDEVILFAPFYDSYEATLSM-AGA------------KIKCITLRP-PDF-AIPIEELKSTISK--- 241 (434)
Q Consensus 182 ai~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~G~------------~~~~v~~~~-~~~-~~d~~~l~~~i~~--- 241 (434)
|++.+++... ....+|+.....|++....... .|. .+..+|+.+ ... .-+++.+++.+..
T Consensus 111 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~ 190 (412)
T TIGR02407 111 AVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSS 190 (412)
T ss_pred HHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccC
Confidence 9999987653 2346788888888886544332 221 223333321 000 0246778877752
Q ss_pred ---CCcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhc
Q 013883 242 ---NTRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFS 317 (434)
Q Consensus 242 ---~~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 317 (434)
++.+|++...+++.|+ .++.+.+++|.++|++||+++|+||++.+|...|.........-.+| +.+++|.+|
T Consensus 191 ~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PD----i~~~~K~lg 266 (412)
T TIGR02407 191 GVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPD----IVCLSKSIS 266 (412)
T ss_pred CCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCC----EEEechhcc
Confidence 3466777666888998 67888899999999999999999999998765554333322222334 446899999
Q ss_pred cc-cceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhh----hCC-CE
Q 013883 318 LT-GWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLN----AVG-FK 390 (434)
Q Consensus 318 ~~-G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~----~~g-~~ 390 (434)
+ |+|+|++++++++ +.+.......+++.+++...++.++|+. .++ .+..++.++..+.+.+.|+ +.+ +.
T Consensus 267 -~~G~pigav~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~~~ 342 (412)
T TIGR02407 267 -GYGLPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSD--DAFEKAVQRKSEIIQERLDRIVAEYPELI 342 (412)
T ss_pred -CCccceeEEEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHhhCCCce
Confidence 7 9999999998876 4443333445777777766666666653 111 1122223333333333332 232 33
Q ss_pred eecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 391 VFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
......|+++|+.+.+. ....++...+++ +||++.+.
T Consensus 343 ~~vrg~Gl~~~l~l~~~--~~~~~~~~~~~~-~Gv~v~~~ 379 (412)
T TIGR02407 343 KQVRGRGLMQGIECGDG--DLAGKIAKAAFE-NGLIIETS 379 (412)
T ss_pred EeeecceeEEEEEecCh--HHHHHHHHHHHH-CCCEEecc
Confidence 34455677888887431 124467777765 59999874
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-17 Score=157.02 Aligned_cols=271 Identities=20% Similarity=0.239 Sum_probs=184.5
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc-cCCCCeEEEcCC
Q 013883 124 PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL-INPGDEVILFAP 202 (434)
Q Consensus 124 ~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vlv~~p 202 (434)
.....+++.+.++.+....++ -..+|.++++++++ .. ..+.++++|.|+.++++++ +.|||+|++++-
T Consensus 14 ~~~e~~~v~~vl~sg~i~~G~--~v~~FE~~~ae~~G--------~k-~ava~~sgT~AL~laL~al~ig~GDeVI~ps~ 82 (374)
T COG0399 14 GEEELAAVQEVLKSGWLTGGP--FVRRFEQAFAEYLG--------VK-YAVAVSSGTAALHLALLALAIGPGDEVIVPSF 82 (374)
T ss_pred chHHHHHHHHHHHcCCeecCh--HHHHHHHHHHHHhC--------CC-eEEEecChHHHHHHHHHhcCCCCCCEEEecCC
Confidence 355677788888876544433 35789999999987 45 6888888899999999976 699999999999
Q ss_pred CchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcC
Q 013883 203 FYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDE 282 (434)
Q Consensus 203 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~De 282 (434)
+|......+...|++++.|.++++++.+|++.+|++|++++|+|+.+ +-.|... ++++|.++|++||++||+|.
T Consensus 83 TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipV---hl~G~~~---dm~~i~~la~~~~l~vIEDa 156 (374)
T COG0399 83 TFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPV---HLAGQPC---DMDAIMALAKRHGLPVIEDA 156 (374)
T ss_pred chHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEe---hhccCCC---CHHHHHHHHHHcCCeEEEEc
Confidence 99999999999999999999999899999999999999999999854 4467666 57778888999999999999
Q ss_pred cCCccc-cCCCCccccCCCCCCCceEEEccC--ChhhccccceeeeEEeC-hhhHHHHHHHhhccc--------------
Q 013883 283 VYDKLA-FEMDHISIASLPGMYERTVTMNSL--GKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLT-------------- 344 (434)
Q Consensus 283 ay~~~~-~~~~~~~~~~~~~~~~~~i~i~S~--SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~~-------------- 344 (434)
+++... |.|+ .+..+. .+.+.|| .|.++ .| -.|.++++ +++.+.++.++....
T Consensus 157 Aqa~Ga~y~gk--~vGt~G-----d~~~fSF~~~K~it-tg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G 227 (374)
T COG0399 157 AQAHGATYKGK--KVGSFG-----DIGAFSFHATKNLT-TG-EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELG 227 (374)
T ss_pred chhccCeecCc--cccccc-----ceEEEEecCCCCcc-cc-CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecc
Confidence 998654 3333 222322 2456666 59998 66 56777775 667777766654332
Q ss_pred --cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC-CEe--ecCC--eeEEEe-eecCCCCCCCHHHHH
Q 013883 345 --FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG-FKV--FPSS--GTYFVV-VDHTPFGHETDIAFC 416 (434)
Q Consensus 345 --~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~--~~~~--~~~~~~-~~~~~~~~~~~~~~~ 416 (434)
+..+.+.+++...-|+. ++++.++-++..+...+.|+++. +.+ .+.. ..++.+ +.+.+. ..+-..+.
T Consensus 228 ~N~rm~~iqAAigl~QL~~----l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~-~~~R~~l~ 302 (374)
T COG0399 228 YNYRLTEIQAAIGLAQLER----LDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEE-GISRDALM 302 (374)
T ss_pred cccCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCC-CCCHHHHH
Confidence 11222223333333333 44444444555566666676652 322 2222 223322 233222 12345676
Q ss_pred HHHHHhcCeE
Q 013883 417 EYLIKEVGVV 426 (434)
Q Consensus 417 ~~Ll~~~GV~ 426 (434)
+.| ++.||.
T Consensus 303 ~~L-~~~gi~ 311 (374)
T COG0399 303 ESL-KEAGVG 311 (374)
T ss_pred HHH-HhCCCC
Confidence 666 455554
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-17 Score=156.40 Aligned_cols=267 Identities=19% Similarity=0.256 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchh--HHHHHHHcCCEEEEEEcCCC
Q 013883 149 PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDS--YEATLSMAGAKIKCITLRPP 226 (434)
Q Consensus 149 ~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~G~~~~~v~~~~~ 226 (434)
.++.+.+.+.+...++.. +.+ -++++.+++.++++++..+++|||+|++.....++ +.++++.+|++++.+...+
T Consensus 37 ~~~~~~~~~~L~~v~~t~-~~~-~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~w- 113 (383)
T COG0075 37 VGIMKEVLEKLRKVFGTE-NGD-VVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEW- 113 (383)
T ss_pred HHHHHHHHHHHHHHhcCC-CCc-EEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCC-
Confidence 455555666666666653 223 67778889999999999999999999999988887 5789999999999998875
Q ss_pred CCCCCHHHHHhhccc--CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCC
Q 013883 227 DFAIPIEELKSTISK--NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYE 304 (434)
Q Consensus 227 ~~~~d~~~l~~~i~~--~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~ 304 (434)
+..+|++++++++++ +.++|.+++...+||+.. .+++|+++|++||.++|+|.+-+. ++....+.. .+
T Consensus 114 g~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvln---pl~~I~~~~k~~g~l~iVDaVsS~---Gg~~~~vd~----wg 183 (383)
T COG0075 114 GEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLN---PLKEIAKAAKEHGALLIVDAVSSL---GGEPLKVDE----WG 183 (383)
T ss_pred CCCCCHHHHHHHHhcCCCccEEEEEeccCcccccC---cHHHHHHHHHHcCCEEEEEecccC---CCcccchhh----cC
Confidence 677899999999985 567888888888999987 467799999999999999998764 333333332 23
Q ss_pred ceEEEccCChhhcc-ccceeeeEEeChhhHHHHHH----------------Hh--hccccCCchHHHHHHHHHHhCC-hH
Q 013883 305 RTVTMNSLGKTFSL-TGWKIGWAIAPPHLTWGVRQ----------------AH--SFLTFATSTPMQWAATAALRAP-ET 364 (434)
Q Consensus 305 ~~i~i~S~SK~~g~-~G~R~G~~~~~~~~~~~l~~----------------~~--~~~~~~~~~~~q~a~~~~L~~~-~~ 364 (434)
-.+++.+--|.++. || +|.+..+++..+.++. .. ....++++....+++..+|+.- ++
T Consensus 184 iDv~itgSQK~l~~PPG--la~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~E 261 (383)
T COG0075 184 IDVAITGSQKALGAPPG--LAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEE 261 (383)
T ss_pred ccEEEecCchhccCCCc--cceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 45778888899964 44 8998888766554431 11 3456788888888888888873 55
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCEeecCCee---EEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 365 YYEELKRDYSAKKAILVEGLNAVGFKVFPSSGT---YFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
.+++..++++++.+.+++.++++|++.+..... -...+. .|.+.+ +.+....+++++||.+.+|..
T Consensus 262 Gle~r~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~tvta~~-~P~g~~-~~~~~~~~~~~~g~~i~gg~~ 330 (383)
T COG0075 262 GLEARIARHRRLAEALRAGLEALGLELFADPERRSPTVTAIK-VPEGVD-DKKVRRALLKEYGVEIAGGQG 330 (383)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCccccCcccCCCceEEEE-CCCCCC-cHHHHHHHHHhCCEEeccccc
Confidence 689999999999999999999999998772211 122222 355654 334444788999999998853
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-17 Score=162.76 Aligned_cols=306 Identities=14% Similarity=0.108 Sum_probs=199.4
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcC-------CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDG-------KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-------~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
.+.|+|--.++- .++.+++++...+.+. ...|.....+.++.....+..++.+|.+. . +|..-+| +.
T Consensus 49 ~~~l~LiasEN~--~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~--a-nvqp~Sg-~~ 122 (493)
T PRK13580 49 RSSLKLIASENY--SSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEH--A-YVQPHSG-AD 122 (493)
T ss_pred hcCceEeccccc--CCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCc--c-cccCCCc-HH
Confidence 456777544321 2455555554444331 12344445566777777777777777654 2 4666666 77
Q ss_pred HHHHHHHHccCC-------------------------------CCeEEEcCCCchhHHHH---HHHcC--CEEEEEEcCC
Q 013883 182 AIAATILGLINP-------------------------------GDEVILFAPFYDSYEAT---LSMAG--AKIKCITLRP 225 (434)
Q Consensus 182 ai~~~~~~l~~~-------------------------------gd~Vlv~~p~y~~~~~~---~~~~G--~~~~~v~~~~ 225 (434)
|+..++.++++| ||+|+..++..++|... ....| .+.+.+++++
T Consensus 123 An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~ 202 (493)
T PRK13580 123 ANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDP 202 (493)
T ss_pred HHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCc
Confidence 777788888876 89999887776654221 12222 4666777776
Q ss_pred CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCc
Q 013883 226 PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYER 305 (434)
Q Consensus 226 ~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~ 305 (434)
+++.+|++.+++.++++++.|+++..+|-.+ .. ++++|.++|+++|+++++|+++....++++... ..+....+.
T Consensus 203 ~~g~iD~d~l~~~~~~~~plvii~g~S~~~~-~~---dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~-~~~~~~~~~ 277 (493)
T PRK13580 203 DTGLLDYDEIAALAREFKPLILVAGYSAYPR-RV---NFAKLREIADEVGAVLMVDMAHFAGLVAGKVFT-GDEDPVPHA 277 (493)
T ss_pred ccCccCHHHHHHHHhhcCCEEEEeCccccCC-Cc---CHHHHHHHHHHcCCEEEEECchhhceeccccch-hhcCCCCCC
Confidence 6788999999999999999998888877755 54 477788899999999999999987666533211 001011234
Q ss_pred eEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHh
Q 013883 306 TVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGL 384 (434)
Q Consensus 306 ~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L 384 (434)
.++++|++|++. |.+.|++++++++++.+.....+...++..+...+++.++... ....++.++++.++.+.|.+.|
T Consensus 278 D~vtgT~hKaL~--GP~GG~I~~~~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L 355 (493)
T PRK13580 278 DIVTTTTHKTLR--GPRGGLVLAKKEYADAVDKGCPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGF 355 (493)
T ss_pred cEEEeCChhhcc--CCCeEEEEecHHHHHHHhhCCCcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 588999999983 4557999999999888865443333334334333334444431 1112556888999999999999
Q ss_pred hhCCCEeecC-CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 385 NAVGFKVFPS-SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 385 ~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
.+.|+++... ..+.++++++.+.+. +...+.+.+++.||.+.+
T Consensus 356 ~~~G~~vv~ggTdshIV~V~lg~~~~--~g~~a~~~L~e~GI~vn~ 399 (493)
T PRK13580 356 LKRGARLVTGGTDNHLVLIDVTSFGL--TGRQAESALLDAGIVTNR 399 (493)
T ss_pred HhcCCCccCCCCCCCEEEEEeCCHHH--HHHHHHHHHHHCCeEEcc
Confidence 9999987632 335667777643221 233455455677999874
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.4e-17 Score=161.30 Aligned_cols=297 Identities=14% Similarity=0.104 Sum_probs=175.9
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHH-HcCCCCCC--C----CCCcHHHHH----HHHHHHHhhcCCCCCCCCcEEEcCC
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAI-RDGKNQYA--R----GHGVPEFNS----AIASRFKKDSGLEVDPEKEVTVTSG 178 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~-~~~~~~Y~--~----~~G~~~lr~----~ia~~l~~~~g~~~~~~~~i~~t~G 178 (434)
+.+||-..+.- .+|.+++++..++ .....+|+ . ...+.+|.+ .+++++ |. +..++.+++
T Consensus 29 ~~~~l~~sen~--~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~----g~----~~alv~~~S 98 (416)
T PRK13034 29 DHLELIASENF--TSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLF----GC----DYANVQPHS 98 (416)
T ss_pred cCeeecccccC--CCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHh----CC----CceEEecCC
Confidence 56776544322 2677777777664 32111111 1 112345555 555544 32 313355677
Q ss_pred hHHHHHHHHHHccCCCCeEEEcCCCchhH-HHHHHH--cCCEE--EEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCC
Q 013883 179 CTEAIAATILGLINPGDEVILFAPFYDSY-EATLSM--AGAKI--KCITLRPPDFAIPIEELKSTISK-NTRAILMNTPH 252 (434)
Q Consensus 179 ~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~-~~~~~~--~G~~~--~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~ 252 (434)
++.|+..++.+++++||+|+++...|.++ ...+.. .+... ..++.+..++.+|++++++.++. ++++|++..+.
T Consensus 99 G~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~~ 178 (416)
T PRK13034 99 GSQANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSA 178 (416)
T ss_pred cHHHHHHHHHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCCc
Confidence 79999999999999999999999998763 221211 12222 23444444677899999998854 67888776554
Q ss_pred CCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhh
Q 013883 253 NPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL 332 (434)
Q Consensus 253 NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~ 332 (434)
+|... ++++|.++|++||+++|+|+++....+..+ .....+ .+..+++.|++|.++ |...|+++++.+.
T Consensus 179 --~g~~~---dl~~l~~la~~~g~~livD~Aha~G~~~~g-~~~~~~---~~~Di~~~s~~K~l~--g~~GG~v~~~~~~ 247 (416)
T PRK13034 179 --YPREL---DFARFREIADEVGALLMVDMAHIAGLVAAG-EHPNPF---PHAHVVTTTTHKTLR--GPRGGMILTNDEE 247 (416)
T ss_pred --ccccc---CHHHHHHHHHHcCCEEEEeCcccccCcccC-CCCCCC---CCceEEEEeCcccCC--CCCCeEEEECcHH
Confidence 45555 577788889999999999999876554321 111111 234588999999994 2235887776544
Q ss_pred H-HHHHHHhhcc-ccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecC-CeeEEEeeecCCCC
Q 013883 333 T-WGVRQAHSFL-TFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFKVFPS-SGTYFVVVDHTPFG 408 (434)
Q Consensus 333 ~-~~l~~~~~~~-~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~ 408 (434)
+ ..++...... ..+...+...++..++... +....+.++++.++.++|++.|++.|+++..+ .....+.+.+...+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~G~~~~~~~~~t~i~~v~~~~~~ 327 (416)
T PRK13034 248 IAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKERGYDLVSGGTDNHLLLVDLRPKG 327 (416)
T ss_pred HHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHcCCEeccCCCCCcEEEEEcCCCC
Confidence 3 4344332111 1112222233333233321 12234557888899999999999999988642 22334555543333
Q ss_pred CCCHHHHHHHHHHhcCeEEEC
Q 013883 409 HETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 409 ~~~~~~~~~~Ll~~~GV~v~p 429 (434)
. +...+.++| +++||.+.+
T Consensus 328 ~-~~~~~~~~L-~~~GI~v~~ 346 (416)
T PRK13034 328 L-SGKDAEQAL-ERAGITVNK 346 (416)
T ss_pred C-CHHHHHHHH-HhCCcEEec
Confidence 2 344455555 667999974
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.4e-18 Score=168.78 Aligned_cols=156 Identities=17% Similarity=0.221 Sum_probs=121.6
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHH----cCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSM----AGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~----~G~~~~~v~~ 223 (434)
..+|+++++++.+ .+ ..++++++++|+..++.+++++||+|+++.+.|.+....+.. .|+++..++.
T Consensus 60 ~~~Le~~lA~l~g--------~~-~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~ 130 (425)
T PRK06084 60 NDVLEQRVAALEG--------GV-GALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAH 130 (425)
T ss_pred HHHHHHHHHHHhC--------CC-ceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECC
Confidence 3577777777765 23 455667778999999999999999999999999865544432 4666655543
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
.|++.+++++++++++|++++|+||||.+++ +++|.++|+++|+++|+|++|...... .+ + ..
T Consensus 131 ------~d~e~le~ai~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~~---~p---~--~~ 193 (425)
T PRK06084 131 ------DDIAALEALIDERTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVLC---RP---F--EH 193 (425)
T ss_pred ------CCHHHHHHHhccCCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC---Ch---h--hc
Confidence 2799999999999999999999999999996 677999999999999999999753221 11 1 12
Q ss_pred CceEEEccCChhhccccceeeeEEeC
Q 013883 304 ERTVTMNSLGKTFSLTGWKIGWAIAP 329 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G~R~G~~~~~ 329 (434)
+..+++.|++|.++.+|.++|.+++.
T Consensus 194 gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 194 GADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred CCCEEEECchhcccccccceeEEEEe
Confidence 34589999999998889998877764
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-16 Score=158.01 Aligned_cols=287 Identities=23% Similarity=0.259 Sum_probs=199.1
Q ss_pred CCcHHHHHHHHHHHHcCC-C----CCCCCC----CcHHHHHHHHHHHHhhcCCCCCC-CCcEEEcCChHHHHHHHHHHc-
Q 013883 122 DGPDFVKDAAIQAIRDGK-N----QYARGH----GVPEFNSAIASRFKKDSGLEVDP-EKEVTVTSGCTEAIAATILGL- 190 (434)
Q Consensus 122 ~~~~~v~~~~~~~~~~~~-~----~Y~~~~----G~~~lr~~ia~~l~~~~g~~~~~-~~~i~~t~G~~~ai~~~~~~l- 190 (434)
+.|+.+.+++.+.+.+.. . .+.... -+.+.|+.++++++ .++ + +|++++|+++++..++..+
T Consensus 10 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg------~~~~~-~v~~~~~~t~a~~~~~~~l~ 82 (371)
T PF00266_consen 10 PMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLG------APPDE-EVVFTSNGTEALNAVASSLL 82 (371)
T ss_dssp B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHT------SSTTE-EEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcC------Ccccc-ccccccccchhhhhhhhccc
Confidence 346678888877765421 1 111111 12355666666665 445 5 8999999999999999999
Q ss_pred --cCCCCeEEEcCCCchhHH----HHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHH
Q 013883 191 --INPGDEVILFAPFYDSYE----ATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL 264 (434)
Q Consensus 191 --~~~gd~Vlv~~p~y~~~~----~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l 264 (434)
+++||+|++.+-.|++.. .+.+..|+++..++.+. +..+|++.+++++++++++++++..+|.||+..+ +
T Consensus 83 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~-~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~p---i 158 (371)
T PF00266_consen 83 NPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADP-GGSLDLEDLEEALNPDTRLVSISHVENSTGVRNP---I 158 (371)
T ss_dssp HHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGT-TSSCSHHHHHHHHHTTESEEEEESBETTTTBBSS---H
T ss_pred cccccccccccccccccccccccccccccchhhhccccccc-cchhhhhhhhhhhccccceEEeecccccccEEee---e
Confidence 799999999999998865 33456799999999875 5688999999999999999999999999999986 5
Q ss_pred HHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhc--
Q 013883 265 NVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSF-- 342 (434)
Q Consensus 265 ~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~-- 342 (434)
++|.++|+++|+++++|.+++.... ...+.. .+-.+++.|..|.+|.+| +|+++.+++.++.++.....
T Consensus 159 ~~I~~~~~~~~~~~~vD~~~~~g~~---~id~~~----~~~D~~~~s~~Kl~gp~G--~g~l~v~~~~~~~~~p~~~~~~ 229 (371)
T PF00266_consen 159 EEIAKLAHEYGALLVVDAAQSAGCV---PIDLDE----LGADFLVFSSHKLGGPPG--LGFLYVRPEAIERLRPAKPGGG 229 (371)
T ss_dssp HHHHHHHHHTTSEEEEE-TTTTTTS---S--TTT----TTESEEEEESTSTTSSST--EEEEEEEHHHHHHHHTSSSSSS
T ss_pred ceehhhhhccCCceeEechhccccc---cccccc----cccceeeecccccCCCCc--hhhheehhhhhhcccccccccc
Confidence 6689999999999999999986332 122222 234578999999445444 89999999888777421111
Q ss_pred -------------------cccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCC-CEeecC-----Ce
Q 013883 343 -------------------LTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVG-FKVFPS-----SG 396 (434)
Q Consensus 343 -------------------~~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-----~~ 396 (434)
...+++.+...++..+|+.. +..+++..++..+..+++.+.|++++ +.+..+ .+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 309 (371)
T PF00266_consen 230 YLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRP 309 (371)
T ss_dssp TTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGT
T ss_pred ccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeeccccccc
Confidence 11245555555656666543 34466778888889999999999875 444321 23
Q ss_pred eEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 397 TYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+.+. +.+. +. +..++.++|.++ ||.+..|..+
T Consensus 310 ~i~~-~~~~--~~-~~~~~~~~L~~~-~I~~~~G~~~ 341 (371)
T PF00266_consen 310 SIVS-FNLP--GS-DADDVVKYLEER-GIAVSTGSAC 341 (371)
T ss_dssp TEEE-EEET--TS-SHHHHHHHHHHH-TEEEEESTTT
T ss_pred ceEE-Eeec--CC-CHHHHHHHHhhc-CEEEeccCcc
Confidence 4333 3332 22 467788887666 9999997643
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-16 Score=156.97 Aligned_cols=273 Identities=18% Similarity=0.179 Sum_probs=188.2
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHH-HHHHcCC
Q 013883 138 GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA-TLSMAGA 216 (434)
Q Consensus 138 ~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~-~~~~~G~ 216 (434)
+...|.......+|.++++++++ .+ .++.+++++.|+.+++...++|||+| +.++|+.... .+...|+
T Consensus 63 GDe~yag~~s~~~lE~~va~~~G--------~~-~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe~~Ga 131 (450)
T TIGR02618 63 GDEAYAGSRNFYHLERTVRELYG--------FK-YVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYHQEKNGA 131 (450)
T ss_pred cchhhcCCCcHHHHHHHHHHHHC--------CC-eEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHHHHhCCe
Confidence 44568888888999999999987 44 79999999999988877788999977 7788865544 4788999
Q ss_pred EEEEEEcC---------CCCCCCCHHHHHhhccc----CCcEEEecCCCCC-cccCCCHHHHHHHHHHHHHcCcEEEEcC
Q 013883 217 KIKCITLR---------PPDFAIPIEELKSTISK----NTRAILMNTPHNP-TGKMFTREELNVIASLCIENDVLVFSDE 282 (434)
Q Consensus 217 ~~~~v~~~---------~~~~~~d~~~l~~~i~~----~~~~i~~~~p~NP-TG~~~~~e~l~~i~~la~~~~~~iI~De 282 (434)
.++.++.+ +.++.+|++.++++|++ ++++|.+.+++|- .|.++|.+++++|.++|++||+.||+|.
T Consensus 132 v~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~Da 211 (450)
T TIGR02618 132 TFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDA 211 (450)
T ss_pred EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 77777553 34588999999999986 3456777788885 4899999999999999999999999999
Q ss_pred cCCccc--c----CC--CCccc----cCCCCCCCceEEEccCChhhccccceeeeEE-eChhhHHHHHHHhhcc----cc
Q 013883 283 VYDKLA--F----EM--DHISI----ASLPGMYERTVTMNSLGKTFSLTGWKIGWAI-APPHLTWGVRQAHSFL----TF 345 (434)
Q Consensus 283 ay~~~~--~----~~--~~~~~----~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~-~~~~~~~~l~~~~~~~----~~ 345 (434)
+...-. + ++ ...++ ..+... -..+..|..|..+.+- .|+++ .++++.++++...-.. ++
T Consensus 212 AR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~--aD~~~~S~~Kd~~~~~--GG~l~~~d~~l~~k~r~~~~~~eG~~ty 287 (450)
T TIGR02618 212 TRCVENAYFIKEREQGYEDKSIAEILKEMMSY--ADGCTMSGKKDCLVNI--GGFLCMNDDEMFQSAKELVVVFEGMPSY 287 (450)
T ss_pred cchhhChhhhhcccccccCCCHHHHHHHHhcc--CcEEEEeeccCCCCCC--ceEEEeCCHHHHHHHHHHhhhcCCcccc
Confidence 986511 1 11 11222 111111 1247888999987551 36666 4688888877664221 22
Q ss_pred CC-chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCC------CCCCHHHHHHH
Q 013883 346 AT-STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPF------GHETDIAFCEY 418 (434)
Q Consensus 346 ~~-~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 418 (434)
+. ..-...+++..|.+..+. ...+.-....++|.+.|.+.|+++..|.++..++++...+ ..-....++..
T Consensus 288 Ggla~r~~~ala~gL~e~~~~--~y~~~r~~~a~~La~~L~~~Gvpv~~p~ggh~V~vda~~~lph~~~~~~p~~al~~~ 365 (450)
T TIGR02618 288 GGLAGRDMEAMAIGIREAVDY--EYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFLPHIPQDQFPAQSLAAS 365 (450)
T ss_pred CchhhhhHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHCCCcccCCCCcceEEEEhHHhCCCCChhhChHHHHHHH
Confidence 22 222344445556542111 1122223356788888888899998888888888874332 11246678888
Q ss_pred HHHhcCeEE
Q 013883 419 LIKEVGVVA 427 (434)
Q Consensus 419 Ll~~~GV~v 427 (434)
|..+.||--
T Consensus 366 ly~~~gir~ 374 (450)
T TIGR02618 366 IYVETGVRS 374 (450)
T ss_pred HHHHhCccE
Confidence 888888753
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=159.34 Aligned_cols=301 Identities=18% Similarity=0.176 Sum_probs=204.4
Q ss_pred CCeeEeCCCCCCCC---CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFPNFD---GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p~~~---~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
+..|||..++-..- .+|.|.++++++++++.. |..+ .++.-.+|+++.+..+. .+ .|-++|++|||...
T Consensus 53 n~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G~~-fg~P---te~Ei~~Aell~~~~p~---~e-~vrfvnSGTEAtms 124 (432)
T COG0001 53 NEYIDYVLGWGPLILGHAHPAVVEAVQEQLERGLS-FGAP---TELEVELAELLIERVPS---IE-KVRFVNSGTEATMS 124 (432)
T ss_pred CEeeehhccCcccccCCCCHHHHHHHHHHHHhcCC-CCCC---CHHHHHHHHHHHHhcCc---cc-EEEEecchhHHHHH
Confidence 35788877754322 367799999999998754 4443 25556677777665442 35 79999999999988
Q ss_pred HHHHc--cCCCCeEEEcCCCchhHHHHHHH-cC-------------------CEEEEEEcCCCCCCCCHHHHHhhccc--
Q 013883 186 TILGL--INPGDEVILFAPFYDSYEATLSM-AG-------------------AKIKCITLRPPDFAIPIEELKSTISK-- 241 (434)
Q Consensus 186 ~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~-~G-------------------~~~~~v~~~~~~~~~d~~~l~~~i~~-- 241 (434)
+++.. ....|+|+..+-+|+++.+.+.. .| ..+..+|++ |++.+++++.+
T Consensus 125 AiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN------D~~al~~~~~~~g 198 (432)
T COG0001 125 AIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN------DLEALEEAFEEYG 198 (432)
T ss_pred HHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCC------CHHHHHHHHHHcC
Confidence 87755 23458999999999998776543 22 123444444 79999998876
Q ss_pred -CCcEEEecCCCCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccC-CCCccccCCCCCCCceEEEccCChhhcc
Q 013883 242 -NTRAILMNTPHNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSL 318 (434)
Q Consensus 242 -~~~~i~~~~p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~-~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 318 (434)
+..+|++.-...--|.++ .++.+++|.++|++||+++|+||+..+|... +.......+. +| +.+|.|.+|
T Consensus 199 ~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~--PD----lttlGKiIG- 271 (432)
T COG0001 199 DDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVE--PD----LTTLGKIIG- 271 (432)
T ss_pred CcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcC--cc----hhhhhhhhc-
Confidence 445565543333345644 4555999999999999999999999998755 3333333332 23 788999999
Q ss_pred ccceeeeEEeChhhHHHHHH---HhhccccCCchHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHhhhCCCEee
Q 013883 319 TGWKIGWAIAPPHLTWGVRQ---AHSFLTFATSTPMQWAATAALRAPE---TYYEELKRDYSAKKAILVEGLNAVGFKVF 392 (434)
Q Consensus 319 ~G~R~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~q~a~~~~L~~~~---~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 392 (434)
.|+.+|.+.+++++++++.. +.+..+++.++.+..|..+.|+... ..++.+.+.-.+.++-+.+.+.+.|+++.
T Consensus 272 GGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~ 351 (432)
T COG0001 272 GGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLT 351 (432)
T ss_pred CCcceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 99999999999999987753 3344578888888888888777532 23555555556666666667777777654
Q ss_pred -cCCeeEEEee-ec-CCC--------CCCCHHHHHHHHHHhcCeEEECCC
Q 013883 393 -PSSGTYFVVV-DH-TPF--------GHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 393 -~~~~~~~~~~-~~-~~~--------~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
...|+||.+. .- .+. +.+.-..+...|+++ ||++.|+.
T Consensus 352 v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~-GV~l~ps~ 400 (432)
T COG0001 352 VNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNR-GVYLAPSQ 400 (432)
T ss_pred EeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhC-CcccCCcc
Confidence 3445665432 21 111 111123466677766 99999985
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.9e-17 Score=164.16 Aligned_cols=310 Identities=12% Similarity=0.062 Sum_probs=188.2
Q ss_pred cCCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...||+..|.- .+. .+|.+.+++.+++.+..+...... ..+....+++.|.+..+. ..+ .+++++++++|+.
T Consensus 42 G~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~-~~~~~~~la~~L~~~~~~--~~~-~v~f~~SGseA~e 117 (433)
T PRK08117 42 GKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVI-YYESILKLAEELAEITPG--GLD-CFFFSNSGAEAIE 117 (433)
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccccc-CCHHHHHHHHHHHHhCCC--CCC-EEEEeCcHHHHHH
Confidence 346788877732 222 467888999998876322110011 124455566666554321 123 7999999999999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHH-HcCC-------------EEEEEEcCCCC---CC--------CCHHHHHh
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLS-MAGA-------------KIKCITLRPPD---FA--------IPIEELKS 237 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~-~~G~-------------~~~~v~~~~~~---~~--------~d~~~l~~ 237 (434)
.+++... ...++|+..+-.|++...... ..+. .+..+|..... .+ -|++.+++
T Consensus 118 ~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 197 (433)
T PRK08117 118 GALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLES 197 (433)
T ss_pred HHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHH
Confidence 9987532 223678888888887544332 1110 12233332100 00 14566666
Q ss_pred hcc-----cCCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEcc
Q 013883 238 TIS-----KNTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNS 311 (434)
Q Consensus 238 ~i~-----~~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S 311 (434)
.+. .+..+|++.......|.+ ++.+.+++|.++|++||+++|+||+|.+|...|.......+...+ .+.+
T Consensus 198 ~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~p----Di~t 273 (433)
T PRK08117 198 LFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVP----DIMT 273 (433)
T ss_pred HHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCC----CEee
Confidence 653 234556665556666775 477889999999999999999999999986665433222221122 2579
Q ss_pred CChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC----
Q 013883 312 LGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV---- 387 (434)
Q Consensus 312 ~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 387 (434)
|||.+| +|+++|++++++++.+.+.......+++.+++.+.++.++|+..++ +++.++++++.+.+++.|+++
T Consensus 274 ~sK~lg-~G~pigav~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~ 350 (433)
T PRK08117 274 IAKGIA-SGLPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKE--EKLLDNANEMGAYALERLEVLKEKH 350 (433)
T ss_pred hhhhcc-CCCcceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999 9999999999999988775544555778889999999998885321 234445555555565555543
Q ss_pred CCEeecCCeeEEEeeecCCCCC----CCHHHHHHHHHHhcCeEEEC
Q 013883 388 GFKVFPSSGTYFVVVDHTPFGH----ETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Ll~~~GV~v~p 429 (434)
++.......|.++.+.+.+... .....+.+.+++ .||.+.+
T Consensus 351 ~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~ 395 (433)
T PRK08117 351 PVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLE-KGLLFYL 395 (433)
T ss_pred CceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHH-CCCEEee
Confidence 3222233344455555432110 113345566654 5999876
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-16 Score=157.11 Aligned_cols=276 Identities=22% Similarity=0.273 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc-cCCCCeEEEcCCCc
Q 013883 126 FVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL-INPGDEVILFAPFY 204 (434)
Q Consensus 126 ~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vlv~~p~y 204 (434)
...+++.+.++++..... ..-+.+|+++++++++ .+ +++.+++++.|+.+++.++ +++||+|+++..+|
T Consensus 6 e~~~~v~~~l~s~~~~~~-g~~~~~fE~~~a~~~g--------~~-~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~ 75 (363)
T PF01041_consen 6 EEIDAVLEVLRSGWLSTY-GPYVEEFEKEFAEYFG--------VK-YAVAVSSGTSALHLALRALGLGPGDEVIVPAYTF 75 (363)
T ss_dssp HHHHHHHHHHHHTCCSSS-SHHHHHHHHHHHHHHT--------SS-EEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-
T ss_pred HHHHHHHHHHHhCCccCC-CHHHHHHHHHHHHHhC--------CC-eEEEeCChhHHHHHHHHhcCCCcCceEecCCCcc
Confidence 445666777776532221 2235788999999887 44 7888899999999999998 58999999999999
Q ss_pred hhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcC
Q 013883 205 DSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVY 284 (434)
Q Consensus 205 ~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay 284 (434)
......+..+|++++.++++++++.+|++.+++++++++++|++++ .-|... ++++|.++|++||++||+|.++
T Consensus 76 ~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~h---~~G~~~---d~~~i~~~~~~~~i~lIeD~a~ 149 (363)
T PF01041_consen 76 PATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVVH---LFGNPA---DMDAIRAIARKHGIPLIEDAAQ 149 (363)
T ss_dssp THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE----GGGB------HHHHHHHHHHTT-EEEEE-TT
T ss_pred hHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEec---CCCCcc---cHHHHHHHHHHcCCcEEEcccc
Confidence 9999999999999999999988999999999999999999998754 466655 7888999999999999999999
Q ss_pred Cccc-cCCCCccccCCCCCCCceEEEccC--ChhhccccceeeeEEeC-hhhHHHHHHHhhcc-----------------
Q 013883 285 DKLA-FEMDHISIASLPGMYERTVTMNSL--GKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFL----------------- 343 (434)
Q Consensus 285 ~~~~-~~~~~~~~~~~~~~~~~~i~i~S~--SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~----------------- 343 (434)
.... +.| ..+..+ + .+.+.|| +|.+. .|. .|+++.+ +++.++++.++...
T Consensus 150 a~g~~~~g--~~~G~~---g--d~~~fSf~~~K~i~-~ge-GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 220 (363)
T PF01041_consen 150 AFGARYKG--RPVGSF---G--DIAIFSFHPTKIIT-TGE-GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGY 220 (363)
T ss_dssp TTT-EETT--EETTSS---S--SEEEEESSTTSSS--SSS--EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--
T ss_pred ccCceeCC--EeccCC---C--CceEecCCCCCCCc-CCC-CeeEEecHHHHHHHhhhhhccCcCccccccccccccCCc
Confidence 8754 222 122222 1 3667776 58885 443 5777875 66677777655422
Q ss_pred ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEee--cCCe---eEEEe-eecCCCCCCCHHHHH
Q 013883 344 TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVF--PSSG---TYFVV-VDHTPFGHETDIAFC 416 (434)
Q Consensus 344 ~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~---~~~~~-~~~~~~~~~~~~~~~ 416 (434)
.+..+.+....+..-|+. +++..++-+++.+.+.+.|.+. ++... ++.. .++.+ +.+.+....+-.++.
T Consensus 221 n~rm~~~~AAigl~QL~~----L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~ 296 (363)
T PF01041_consen 221 NFRMSELQAAIGLAQLKR----LDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDELV 296 (363)
T ss_dssp B-B-BHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHH
T ss_pred ccccHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccccchHHHHH
Confidence 122344444444555554 4555555566777788888876 44332 2222 23222 222221112466788
Q ss_pred HHHHHhcCeEEECCC
Q 013883 417 EYLIKEVGVVAIPTS 431 (434)
Q Consensus 417 ~~Ll~~~GV~v~pG~ 431 (434)
+.|.++ ||...+.-
T Consensus 297 ~~L~~~-GI~~~~~~ 310 (363)
T PF01041_consen 297 EALRAR-GIETRPHY 310 (363)
T ss_dssp HHHHHT-TBEEBCST
T ss_pred HHHHHC-CCcccccc
Confidence 888655 99988753
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-17 Score=161.47 Aligned_cols=209 Identities=18% Similarity=0.201 Sum_probs=142.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHH----HHHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYE----ATLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~G~~~~~v~~ 223 (434)
...|+++++++.+ .+..+++++| +.++.+++ .++++||+|++++|.|++.. ..+...|++++.++.
T Consensus 52 ~~~Le~~la~l~g--------~~~al~~~SG-~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~ 121 (380)
T PRK06176 52 RFALEELIADLEG--------GVKGFAFASG-LAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT 121 (380)
T ss_pred HHHHHHHHHHHhC--------CCCEEEECCH-HHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC
Confidence 4567777777765 2225666565 66888666 57799999999999998654 345667888887754
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
. |++.+++++++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|....+. . ++ . .
T Consensus 122 ~------d~e~l~~ai~~~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~-~--p~-~----~ 184 (380)
T PRK06176 122 S------DLSQIKKAIKPNTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQ-N--PL-L----L 184 (380)
T ss_pred C------CHHHHHHhcCcCceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccccC-C--cc-c----c
Confidence 3 799999999999999999999999999885 667999999999999999999864332 1 11 1 1
Q ss_pred CceEEEccCChhhcccc-ceeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSLTG-WKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILV 381 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G-~R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~ 381 (434)
+-.+++.|++|.++-+| .-.|+++++ +++.++++..+.......++...+.+...|+. +....++..++...+.
T Consensus 185 gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~t----l~~R~~~~~~~a~~la 260 (380)
T PRK06176 185 GADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKT----LGLRMEAHQKNALCVA 260 (380)
T ss_pred CCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccCc----HHHHHHHHHHHHHHHH
Confidence 33488999999996444 346777774 56666676666543333344443333333322 2223334444555556
Q ss_pred HHhhhC
Q 013883 382 EGLNAV 387 (434)
Q Consensus 382 ~~L~~~ 387 (434)
+.|++.
T Consensus 261 ~~L~~~ 266 (380)
T PRK06176 261 EFLEKH 266 (380)
T ss_pred HHHHhC
Confidence 666553
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-16 Score=152.95 Aligned_cols=274 Identities=17% Similarity=0.149 Sum_probs=186.9
Q ss_pred HHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH-H
Q 013883 133 QAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT-L 211 (434)
Q Consensus 133 ~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~-~ 211 (434)
.++..+...|.....+.+|.++++++++ .+ .++.+++++.|+.+++...++|||+| +..+|...... +
T Consensus 65 a~~~vGDd~Yagd~s~~~LE~~vAe~lG--------~e-~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI 133 (460)
T PRK13237 65 AGMMIGDEAYAGSRNFYHLEETVQEYYG--------FK-HVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQ 133 (460)
T ss_pred HHHhhcchhhcCCCcHHHHHHHHHHHHC--------CC-eEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHH
Confidence 3344455679888888999999999987 44 68888888999998777778999965 55555554433 7
Q ss_pred HHcCCEEEEEEcC---------CCCCCCCHHHHHhhcccC----CcEEEecCCCCCc-ccCCCHHHHHHHHHHHHHcCcE
Q 013883 212 SMAGAKIKCITLR---------PPDFAIPIEELKSTISKN----TRAILMNTPHNPT-GKMFTREELNVIASLCIENDVL 277 (434)
Q Consensus 212 ~~~G~~~~~v~~~---------~~~~~~d~~~l~~~i~~~----~~~i~~~~p~NPT-G~~~~~e~l~~i~~la~~~~~~ 277 (434)
...|+..+.+..+ +.++.+|++.++++|+++ +++|.+..++|.. |...|.+++++|.++|++||+.
T Consensus 134 ~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~ 213 (460)
T PRK13237 134 ELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIK 213 (460)
T ss_pred HhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCE
Confidence 7888866655322 346889999999999763 3456667788888 7889999999999999999999
Q ss_pred EEEcCcCCcc----c------cCCCCcccc----CCCCCCCceEEEccCChhhccccceeeeEEeC-hhhHHHHHHHhhc
Q 013883 278 VFSDEVYDKL----A------FEMDHISIA----SLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSF 342 (434)
Q Consensus 278 iI~Deay~~~----~------~~~~~~~~~----~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~ 342 (434)
||+|.+...- . |.+ .++. .+.. .-.....|++|.++.+ . .|+++.+ +++.++++...-.
T Consensus 214 Vi~DaAra~gna~fI~~re~~y~~--~~i~ei~~e~~s--~aD~~t~S~~K~~~~~-~-GG~i~t~D~eL~~~~r~~~~~ 287 (460)
T PRK13237 214 VFFDATRCVENAYFIKEREEGYQD--KSIKEIVHEMFS--YADGCTMSGKKDCLVN-I-GGFLAMNDEELFDEAKELVVV 287 (460)
T ss_pred EEEECcchhcChhhhcccccccCC--CcHhHHhhhccC--cCcEEEEeCCCCCCCC-C-ceEEEECCHHHHHHHHHhccc
Confidence 9999997632 1 111 1221 1111 1236677899999744 2 3777775 6677777665311
Q ss_pred ----cccCC-chHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCC------CC
Q 013883 343 ----LTFAT-STPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPF------GH 409 (434)
Q Consensus 343 ----~~~~~-~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~------~~ 409 (434)
.+++. +.--..+++..|.+. .+|++. .....++|.+.|.+.|++++.|.||+-++++...+ ..
T Consensus 288 ~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~----ri~~~~~l~~~L~~~Gvpv~~p~ggH~v~vda~~~lph~~~~~ 363 (460)
T PRK13237 288 YEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEH----RVGQVRYLGEKLLAAGVPIVEPVGGHAVFLDARRFLPHLPQDQ 363 (460)
T ss_pred cCCCcCCCChhhhHHHHHHhHHHhhchHHHHHH----HHHHHHHHHHHHHHCCCceecCCCceEEEEEhHHhCCCCCccc
Confidence 12222 121344444445542 233333 33456788899999999999999999888864322 11
Q ss_pred CCHHHHHHHHHHhcCeEE
Q 013883 410 ETDIAFCEYLIKEVGVVA 427 (434)
Q Consensus 410 ~~~~~~~~~Ll~~~GV~v 427 (434)
-....++..|..+.||--
T Consensus 364 ~p~~al~~~ly~~~GiR~ 381 (460)
T PRK13237 364 FPAQALAAELYIESGVRS 381 (460)
T ss_pred ChHHHHHHHHHHHhCcCe
Confidence 246678888888888753
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-16 Score=158.98 Aligned_cols=313 Identities=14% Similarity=0.114 Sum_probs=185.0
Q ss_pred cCCeeEeCCCCCC--CC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEE-cCChHHHH
Q 013883 108 KHGAINLGQGFPN--FD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTV-TSGCTEAI 183 (434)
Q Consensus 108 ~~~~i~l~~g~p~--~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~-t~G~~~ai 183 (434)
+...|||..|.-. +. .+|.+.+++++++......+... ...+.+..+++.+.+....+...+..+++ ++++++|+
T Consensus 38 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~-~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~ 116 (425)
T PRK09264 38 GKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLD-MHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAV 116 (425)
T ss_pred CCEeeecccchhhccCCCCCHHHHHHHHHHHHhcccccccc-cCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHH
Confidence 3457888666322 22 36788889988887522111111 11244555666665432111111114655 58999999
Q ss_pred HHHHHHcc--CCCCeEEEcCCCchhHHHHHHHc-C------------CEEEEEEcCCC-CCC-CCHHHHHhhccc-----
Q 013883 184 AATILGLI--NPGDEVILFAPFYDSYEATLSMA-G------------AKIKCITLRPP-DFA-IPIEELKSTISK----- 241 (434)
Q Consensus 184 ~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-G------------~~~~~v~~~~~-~~~-~d~~~l~~~i~~----- 241 (434)
+.+++... ...++|+.....|++........ | ..+..+|+... ... -|++.+++.+..
T Consensus 117 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~ 196 (425)
T PRK09264 117 EAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGV 196 (425)
T ss_pred HHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCC
Confidence 99887653 23467888888888865433222 1 12344444310 001 267788887743
Q ss_pred -CCcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccc
Q 013883 242 -NTRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLT 319 (434)
Q Consensus 242 -~~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 319 (434)
+..+|++.......|+ +++.+.+++|.++|++||+++|+||++.+|...|.......+.-.+| +.+++|.+|..
T Consensus 197 ~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PD----i~t~~K~l~~~ 272 (425)
T PRK09264 197 DLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPD----IVTLSKSISGY 272 (425)
T ss_pred CceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCC----EEEeccccCCC
Confidence 3456666555666776 56888999999999999999999999998766554333332222233 45789999944
Q ss_pred cceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHH-HHHHHHHHHHHHHHHHHhhh----CC-CEeec
Q 013883 320 GWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYY-EELKRDYSAKKAILVEGLNA----VG-FKVFP 393 (434)
Q Consensus 320 G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~-~~~~~~~~~~~~~l~~~L~~----~g-~~~~~ 393 (434)
|+++|++++++++ ..+.......+++.++++..++.++|+.. +. .++.++++++.+.+++.|++ .+ +....
T Consensus 273 G~pigav~~~~~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~--~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~v 349 (425)
T PRK09264 273 GLPMALVLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEEY--WSDDAFEKEVKAKGELVRERLEEIAAKYPGLGAEV 349 (425)
T ss_pred ccceEEEEEchhh-hccCCCccCCCCCCCHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHhCCCceecc
Confidence 9999999999886 33332223346777777776666666421 11 13444555555555555543 22 21223
Q ss_pred CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 394 SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
...|+++++.+.+. .....++..+++ .||.+.|+.
T Consensus 350 rg~Gl~~~i~l~~~--~~~~~l~~~~~~-~Gv~~~~~~ 384 (425)
T PRK09264 350 RGRGMMQGIDFGDG--ELAGKIAAEAFE-NGLIIETSG 384 (425)
T ss_pred eecccEEEEEecCh--HHHHHHHHHHHH-CCCEEeccC
Confidence 34566777776421 124467777765 499998854
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=156.89 Aligned_cols=312 Identities=16% Similarity=0.149 Sum_probs=202.6
Q ss_pred cCCeeEeCCC--CCCCC-CcHHHHHHHHHHHHcCC-CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 108 KHGAINLGQG--FPNFD-GPDFVKDAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 108 ~~~~i~l~~g--~p~~~-~~~~v~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
+...|||..| ...+. .+|.+.+++.+++.... ..+.... .+-..++++.|......+ ..+ .+++++++++|+
T Consensus 55 G~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~~~--~e~~v~~ae~L~~~~p~~-~~~-~~~f~~sGaeA~ 130 (447)
T COG0160 55 GNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLY--YEPYVELAEKLTALAPGS-GLK-KVFFGNSGAEAV 130 (447)
T ss_pred CCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccCCccc--chhHHHHHHHHHHhCCcc-cCC-eEEecCCcHHHH
Confidence 3457888775 33333 47889999998877632 2222221 244555566555433221 233 799999999999
Q ss_pred HHHHHHcc--CCCCeEEEcCCCchhHHHH-HHHcC-------------CEEEEEEcCCC--C-CCC--------CHHHHH
Q 013883 184 AATILGLI--NPGDEVILFAPFYDSYEAT-LSMAG-------------AKIKCITLRPP--D-FAI--------PIEELK 236 (434)
Q Consensus 184 ~~~~~~l~--~~gd~Vlv~~p~y~~~~~~-~~~~G-------------~~~~~v~~~~~--~-~~~--------d~~~l~ 236 (434)
+++++... ..+..|+...-.|++.... +...| ..+..+|+... + +.. ..+.++
T Consensus 131 E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e 210 (447)
T COG0160 131 EAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIE 210 (447)
T ss_pred HHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHH
Confidence 99987652 3346788888888874333 22211 23666666431 1 111 234455
Q ss_pred hhccc------CCcEEEecCCCCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEE
Q 013883 237 STISK------NTRAILMNTPHNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTM 309 (434)
Q Consensus 237 ~~i~~------~~~~i~~~~p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i 309 (434)
..+.. ++.++++...+...|.+. |.+.++++.++|++||+++|+||++.+|...|..+.+..+.-.+| +
T Consensus 211 ~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PD----i 286 (447)
T COG0160 211 RALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPD----I 286 (447)
T ss_pred HHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCC----E
Confidence 53422 456777776788888854 556699999999999999999999999999887777776654455 6
Q ss_pred ccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC--
Q 013883 310 NSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-- 387 (434)
Q Consensus 310 ~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 387 (434)
-+++|.+| .|+.+|.+++.+++.+ ...-....+|+.++.+.+++.++|+..++ +.+.++..+.-+++++.|+++
T Consensus 287 vt~aK~ig-~G~Pl~avv~r~ei~~-~~~g~~~~Tf~GNpva~Aaa~AvL~vie~--e~L~~~a~~~G~~l~~~L~~l~~ 362 (447)
T COG0160 287 VTLAKSLG-GGLPLSAVVGRAEIMD-WPPGGHGGTFGGNPVACAAALAVLDVIEE--ENLLERAAELGEYLRDRLEELQE 362 (447)
T ss_pred EEeccccc-CCCceeEEeccHHhcc-cCCcccCCCCCcCHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHh
Confidence 67999999 7999999999999987 44444446799999999999999985322 255666666777777777654
Q ss_pred CCEee--cCCeeEEEeeecCCCC------CCCHHHHHHHHHHhcCeEEECCCC
Q 013883 388 GFKVF--PSSGTYFVVVDHTPFG------HETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 388 g~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
..+.+ ...-|.++-+.+.... .+....++.+++++ |+.+..+..
T Consensus 363 ~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~-Glil~~~G~ 414 (447)
T COG0160 363 KHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFER-GLLLLTCGP 414 (447)
T ss_pred hcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHc-CCEEeccCC
Confidence 22222 2233555555554221 11234566666654 998877653
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-17 Score=142.89 Aligned_cols=165 Identities=21% Similarity=0.190 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHH-HHHHHcCCEEEEEEcCCCC
Q 013883 149 PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYE-ATLSMAGAKIKCITLRPPD 227 (434)
Q Consensus 149 ~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~-~~~~~~G~~~~~v~~~~~~ 227 (434)
.++++.++++++ .+++ ++++++|+++++.+++.++.++|++|+++++.|+++. ..+...|++++.++.++.+
T Consensus 3 ~~~~~~l~~~~~------~~~~-~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 75 (170)
T cd01494 3 EELEEKLARLLQ------PGND-KAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAG 75 (170)
T ss_pred HHHHHHHHHHcC------CCCC-cEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHHhcCCEEEEeccCCCC
Confidence 578888888874 3355 7999999999999999999999999999999999988 8889999999999887532
Q ss_pred -CCCCHHHHHhhc-ccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCc
Q 013883 228 -FAIPIEELKSTI-SKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYER 305 (434)
Q Consensus 228 -~~~d~~~l~~~i-~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~ 305 (434)
...+++.+++.. .++++++++++++||+|...+. ++|.++|+++|+++|+|++|..+...... .... ..+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~---~~l~~~~~~~~~~li~D~a~~~~~~~~~~---~~~~-~~~~ 148 (170)
T cd01494 76 YGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPL---KEIRKIAKEYGILLLVDAASAGGASPAPG---VLIP-EGGA 148 (170)
T ss_pred ccchhhhhhhhccccCceEEEEEecCcCCCCeEcCH---HHHHHHHHHcCCEEEEecccccccccccc---cccc-cccC
Confidence 222333554433 4578999999999999998865 67888899999999999999987654321 1111 2345
Q ss_pred eEEEccCChhhccccceeeeEEeC
Q 013883 306 TVTMNSLGKTFSLTGWKIGWAIAP 329 (434)
Q Consensus 306 ~i~i~S~SK~~g~~G~R~G~~~~~ 329 (434)
.+++.|++|.++. .++|+++++
T Consensus 149 d~~~~s~~K~~~~--~~~G~l~~~ 170 (170)
T cd01494 149 DVVTFSLHKNLGG--EGGGVVIVK 170 (170)
T ss_pred CEEEEEcccccCC--CceEEEEeC
Confidence 6888999999983 779998863
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-16 Score=155.78 Aligned_cols=308 Identities=15% Similarity=0.155 Sum_probs=184.9
Q ss_pred cCCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...+||..|.- .+. .+|.+.+++++++.+..+...... ..+.+..+++.+.+.... ..+ .+++++++++|++
T Consensus 41 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~-~~~~~~~la~~l~~~~p~--~~~-~v~f~~sGseA~e 116 (423)
T PRK05964 41 GRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGF-THEPAERLAQRLVALTPG--GLD-HVFFSDSGSVAVE 116 (423)
T ss_pred CCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCcccccc-CCHHHHHHHHHHHHhCCC--CCC-EEEEeCCcHHHHH
Confidence 336788876622 222 367888899988876432111011 124456677777654421 124 7999999999999
Q ss_pred HHHHHccC-------CC-CeEEEcCCCchhHHHHHHHcCC-------------EEEEEEcCCCC-CCCCHHHHHhhccc-
Q 013883 185 ATILGLIN-------PG-DEVILFAPFYDSYEATLSMAGA-------------KIKCITLRPPD-FAIPIEELKSTISK- 241 (434)
Q Consensus 185 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~-~~~d~~~l~~~i~~- 241 (434)
.+++.... +| .+|+...-.|++.......... .+..+++...+ ...+++.+++.+..
T Consensus 117 ~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~ 196 (423)
T PRK05964 117 VALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKH 196 (423)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhC
Confidence 99876521 23 5788888888886544332211 12223332111 11127788887753
Q ss_pred --CCcEEEecC-CCCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhc
Q 013883 242 --NTRAILMNT-PHNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFS 317 (434)
Q Consensus 242 --~~~~i~~~~-p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 317 (434)
+..+|++.. .++..|..+ +.+.+++|.++|++||+++|+||++.++...|...........+| +.+++|.++
T Consensus 197 ~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~pD----i~~~~K~l~ 272 (423)
T PRK05964 197 AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPD----IMCLSKGLT 272 (423)
T ss_pred CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCCC----eeeeehhhh
Confidence 445666654 377788765 888999999999999999999999998765553322222211222 457899998
Q ss_pred ccc-ceeeeEEeChhhHHHHHHH------hhccccCCchHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHhhhC-
Q 013883 318 LTG-WKIGWAIAPPHLTWGVRQA------HSFLTFATSTPMQWAATAALRA--PETYYEELKRDYSAKKAILVEGLNAV- 387 (434)
Q Consensus 318 ~~G-~R~G~~~~~~~~~~~l~~~------~~~~~~~~~~~~q~a~~~~L~~--~~~~~~~~~~~~~~~~~~l~~~L~~~- 387 (434)
.| +++|++++++++.+.+... ....+++.++++..++.++|+. .+++++ +..++-+.+++.|+++
T Consensus 273 -gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~----~~~~~g~~l~~~l~~l~ 347 (423)
T PRK05964 273 -GGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLE----RVAALSAGLAEGLEPFR 347 (423)
T ss_pred -cCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHhhc
Confidence 55 8999999999998877531 1223566788888888887773 233444 4444444455544443
Q ss_pred CCEe---ecCCeeEEEeeecCCCCC-CCHHHHHHHHHHhcCeEEECC
Q 013883 388 GFKV---FPSSGTYFVVVDHTPFGH-ETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 388 g~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~Ll~~~GV~v~pG 430 (434)
++.. +...|. ++.+.+..... .....+...|++ +||.+.|.
T Consensus 348 ~~~~i~~vrg~Gl-~~~i~l~~~~~~~~~~~l~~~l~~-~Gv~v~~~ 392 (423)
T PRK05964 348 DLPGVADVRVLGA-IGAVELDRPVLERDGPALRAFALE-RGVLLRPL 392 (423)
T ss_pred cCCCeEEeecccE-EEEEEeccCcchhHHHHHHHHHHH-CCeEEEec
Confidence 2221 233444 33344422110 014567777765 59999874
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.8e-16 Score=153.18 Aligned_cols=301 Identities=17% Similarity=0.130 Sum_probs=191.3
Q ss_pred cCCeeEeCCCC----CCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 108 KHGAINLGQGF----PNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 108 ~~~~i~l~~g~----p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
+...+||..|. -++. +|.+.+++.+++.+..+.+.. ...++...+++.+.+..+ .+ .+++++++++|+
T Consensus 35 G~~~lD~~sg~~~~~lGh~-~p~v~~a~~~q~~~~~~~~~~--~~~~~~~~la~~l~~~~~----~~-~v~f~~SGseA~ 106 (395)
T PRK03715 35 GKRYLDFIQGWAVNCLGHC-NPGMVEALAAQAEKLINPSPA--FYNEPMAKLAGLLTQHSC----FD-KVFFANSGAEAN 106 (395)
T ss_pred CCEEEECCcChhhccCCCC-CHHHHHHHHHHHHhccccccc--ccCHHHHHHHHHHhhccC----CC-EEEEeCCcHHHH
Confidence 34678987652 2333 588898998888764333222 235677888888875432 24 799999999999
Q ss_pred HHHHHHcc------CCC-CeEEEcCCCchhHHH-HHHHcCCEEEEEEcCC--CCC----CCCHHHHHhhcccCCcEEEec
Q 013883 184 AATILGLI------NPG-DEVILFAPFYDSYEA-TLSMAGAKIKCITLRP--PDF----AIPIEELKSTISKNTRAILMN 249 (434)
Q Consensus 184 ~~~~~~l~------~~g-d~Vlv~~p~y~~~~~-~~~~~G~~~~~v~~~~--~~~----~~d~~~l~~~i~~~~~~i~~~ 249 (434)
..+++... ++| ++|+..+..|++... .+...|.........+ .++ ..|++.+++.+.+++++|++.
T Consensus 107 e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~E 186 (395)
T PRK03715 107 EGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITDKTVAVMLE 186 (395)
T ss_pred HHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCCCceEEEEe
Confidence 99988774 123 568888888877543 3333343211111110 111 247899999998778888887
Q ss_pred CCCCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEe
Q 013883 250 TPHNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA 328 (434)
Q Consensus 250 ~p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~ 328 (434)
..++..|... +.+.+++|.++|++||+++|+||++.+|...|.......+.-.+| +.+++|.+| .|+.+|.+++
T Consensus 187 pv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PD----i~t~gK~lg-~G~p~~av~~ 261 (395)
T PRK03715 187 PVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPD----IMTLGKGIG-GGVPLAALLA 261 (395)
T ss_pred CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCc----eeeehhhhh-CCcceEEEEE
Confidence 6677778764 688899999999999999999999998765555433333322233 568899999 7899999999
Q ss_pred ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh----CCCEeecCCeeEEEeeec
Q 013883 329 PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA----VGFKVFPSSGTYFVVVDH 404 (434)
Q Consensus 329 ~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~~~ 404 (434)
++++.. +.......+++.+++...++.+.|+.-++ +++.++.+++.+++++.|++ .++..+...|. ++-+.+
T Consensus 262 ~~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~i~~vrG~Gl-m~~i~l 337 (395)
T PRK03715 262 KAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQLLA--PGFLEGVRARGEYLKEKLLELSEERGLEGERGEGL-LRALLL 337 (395)
T ss_pred cccccc-ccCCCcCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHhhcCCcCeEEccee-EEEEEe
Confidence 988752 21111234667777777777777765321 23455566666666666654 35443444444 444444
Q ss_pred CCCCCCCHHHHHHHHHHhc---CeEEEC
Q 013883 405 TPFGHETDIAFCEYLIKEV---GVVAIP 429 (434)
Q Consensus 405 ~~~~~~~~~~~~~~Ll~~~---GV~v~p 429 (434)
.. .....+.+.+ .+. ||++.+
T Consensus 338 ~~---~~~~~~~~~~-~~~~~~Gi~~~~ 361 (395)
T PRK03715 338 GK---DIGPQIVEKA-RDMQPDGLLLNA 361 (395)
T ss_pred cC---chHHHHHHHH-HhccCCCEEEee
Confidence 22 1122333322 333 999864
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.3e-16 Score=155.63 Aligned_cols=311 Identities=12% Similarity=0.053 Sum_probs=186.7
Q ss_pred cCCeeEeCCCCCC--CC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFPN--FD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p~--~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...|||..|.-. +. .+|.+.+++.+++....+.+... -..+.+.++++.+.+..+......+.+++++++++|++
T Consensus 38 G~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~-~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e 116 (442)
T TIGR00709 38 GKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLD-LTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVE 116 (442)
T ss_pred CCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccccc-cCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHH
Confidence 3357888766322 22 36778889988887643221111 11355666777776654321111223566789999999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHHHc-C------------CEEEEEEcCCCCCCC--------CH----HHHHh
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLSMA-G------------AKIKCITLRPPDFAI--------PI----EELKS 237 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-G------------~~~~~v~~~~~~~~~--------d~----~~l~~ 237 (434)
.+++... ....+|+.....|++........ | ..+..+++.. .... +. +.+++
T Consensus 117 ~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 195 (442)
T TIGR00709 117 AAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPH-EYRCPFGIGGEAGSNASIEYFEN 195 (442)
T ss_pred HHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCc-cccccccCCchhHHHHHHHHHHH
Confidence 9987653 23467888888888876544332 2 1122333321 1111 11 12333
Q ss_pred hcc------cCCcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEc
Q 013883 238 TIS------KNTRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMN 310 (434)
Q Consensus 238 ~i~------~~~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~ 310 (434)
.+. .+..++++...++..|. .++.+.+++|.++|++||+++|.||+|.+|.+.|.......+...+| +-
T Consensus 196 ~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PD----iv 271 (442)
T TIGR00709 196 FIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPD----FV 271 (442)
T ss_pred HHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCc----EE
Confidence 332 34566777655555555 57899999999999999999999999999977776555444433334 33
Q ss_pred cCChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC---
Q 013883 311 SLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV--- 387 (434)
Q Consensus 311 S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 387 (434)
+++|.++ .|+++|+++++++ .+.+.......+++.++.+++++.++|+..++ +++.++.+++.+++.+.|+++
T Consensus 272 ~~gK~l~-~G~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~ 347 (442)
T TIGR00709 272 VMSKAVG-GGLPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKD--DNLAQNAQERGERITSFLDDMIKE 347 (442)
T ss_pred EEccccc-CCcccEEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999 6999999999887 44433222346788899999999999975221 234556666667776666643
Q ss_pred -CCE-eecCCeeEEEeeecCCCC--------CC----CHHHHHHHHHHhcCeEEECC
Q 013883 388 -GFK-VFPSSGTYFVVVDHTPFG--------HE----TDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 388 -g~~-~~~~~~~~~~~~~~~~~~--------~~----~~~~~~~~Ll~~~GV~v~pG 430 (434)
++. -+...|.| +-+.+.+.. .. ....+...+++ +||++.++
T Consensus 348 ~~~v~~vrG~Gl~-~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~ 402 (442)
T TIGR00709 348 HPCIGNVRGRGLM-QGIMIVDERQSKDATGAYPRDCELAAAIQGACFE-NGLLLETG 402 (442)
T ss_pred CCCeeeeeccceE-EEEEEccCcccccccccCCcchHHHHHHHHHHHH-CCeEEeec
Confidence 322 22334444 334332110 00 12345555554 59999764
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-16 Score=146.01 Aligned_cols=294 Identities=16% Similarity=0.174 Sum_probs=210.5
Q ss_pred eEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCC---CCCC----cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 112 INLGQGFPNFDGPDFVKDAAIQAIRDGKNQYA---RGHG----VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 112 i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~---~~~G----~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+..+..|.+...+|.+.+++.+.++....+-+ .+.| ..+|.+++|++.+ .+ ..++.+++.-|..
T Consensus 175 VWCSNDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHq--------K~-aALlFsSCfVAND 245 (570)
T KOG1360|consen 175 VWCSNDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQ--------KE-AALLFSSCFVAND 245 (570)
T ss_pred EEecCccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhc--------Cc-ceeeeeeeeeccc
Confidence 45555688888999999999999877321111 1122 3578888998876 33 3455555566666
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc----CCcEEEecCCCCCcccC
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK----NTRAILMNTPHNPTGKM 258 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~----~~~~i~~~~p~NPTG~~ 258 (434)
..+..+. -||-+|+-..-.+....+.++..+.+-..+..+ |++.|++++.+ .+|+|-+.+.|..+|.+
T Consensus 246 stLftLak~lpgcei~SD~gNHASMI~GIrns~v~K~IFrHN------D~~hL~~lL~~~~~svPKivAFEtVhSM~Gav 319 (570)
T KOG1360|consen 246 STLFTLAKKLPGCEIFSDEGNHASMIQGIRNSRVPKHIFRHN------DLDHLEQLLQSSPKSVPKIVAFETVHSMDGAV 319 (570)
T ss_pred hHHHHHHHHCCCcEEeccccchHHHHHHhhhcCCcceeeccC------CHHHHHHHHHhCCCCCCceEEEeeeeccCCCc
Confidence 6666653 478788888888888888888888776655544 78889988865 57888889999999999
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCC-CCceEEEccCChhhccccceeeeEEeChhhHHHHH
Q 013883 259 FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM-YERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVR 337 (434)
Q Consensus 259 ~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~-~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~ 337 (434)
.|.| +|++++++||.+-++||++.-..|+...-.+..-++. ..-.|+.+++.|.||.-| ||+.+..++++.++
T Consensus 320 cple---elcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVG---GYIAat~~LvDmiR 393 (570)
T KOG1360|consen 320 CPLE---ELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVG---GYIAATRKLVDMIR 393 (570)
T ss_pred CCHH---HHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccccc---ceehhhhhHHHHHH
Confidence 9755 5999999999999999999987787544444333332 233577899999999888 99999999999999
Q ss_pred HHhhccccCC--chHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHH
Q 013883 338 QAHSFLTFAT--STPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIA 414 (434)
Q Consensus 338 ~~~~~~~~~~--~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (434)
.+.....|+. ++.....++.+++.. -+.-+.+|+..+++..++++.|.++|++|++...- ++-+.+- +.....+
T Consensus 394 SyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~GiPVi~~pSH-IiPv~vg--da~l~~~ 470 (570)
T KOG1360|consen 394 SYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGIPVIPNPSH-IIPVRVG--DAALAKQ 470 (570)
T ss_pred HhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCcccCCCcc-eeeeecc--CHHHHHH
Confidence 8776655554 444444455544431 11234567777888899999999999999765544 3333331 1123557
Q ss_pred HHHHHHHhcCeEEEC
Q 013883 415 FCEYLIKEVGVVAIP 429 (434)
Q Consensus 415 ~~~~Ll~~~GV~v~p 429 (434)
.+..|+.++||||-.
T Consensus 471 ~sd~Li~~h~iYvQa 485 (570)
T KOG1360|consen 471 ASDILISKHNIYVQA 485 (570)
T ss_pred HHHHHHHhcCeEEEe
Confidence 888899999999853
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-16 Score=158.21 Aligned_cols=155 Identities=17% Similarity=0.223 Sum_probs=121.5
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHH----HHHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYE----ATLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~G~~~~~v~~ 223 (434)
..+|++.++++.+ .+ ..++++++++|+.+++.+++++||+|+++.+.|.+.. ..+...|++++.++.
T Consensus 65 ~~~le~~lA~l~g--------~~-~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (427)
T PRK05994 65 NAVLEERVAALEG--------GT-AALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADA 135 (427)
T ss_pred HHHHHHHHHHHhC--------CC-cEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECC
Confidence 3567777777765 23 4677788899999999999999999999999998643 346678999988865
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
. |++.+++++++++++|++++|+||||.+++ +++|+++|+++|+++|+|++|..... ...+ ..
T Consensus 136 ~------d~~~l~~ai~~~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~~------~~pl--~~ 198 (427)
T PRK05994 136 D------DPASFERAITPRTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPYL------IRPI--EH 198 (427)
T ss_pred C------CHHHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCcccccc------CCcc--cc
Confidence 3 789999999999999999999999999985 67799999999999999999974221 1111 12
Q ss_pred CceEEEccCChhhccccceeeeEEe
Q 013883 304 ERTVTMNSLGKTFSLTGWKIGWAIA 328 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G~R~G~~~~ 328 (434)
+-.+++.|++|.+|-+|-.+|.+++
T Consensus 199 gaDivv~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 199 GADIVVHSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred CCcEEEEcCccccCCCCCcEEEEEE
Confidence 3448899999999755655665554
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-15 Score=153.56 Aligned_cols=311 Identities=16% Similarity=0.146 Sum_probs=185.2
Q ss_pred cCCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...|||..|.- .+. .+|.+.+++.+++.+..+ +.......+...++++.+.+..+... .+ .+++++++++|++
T Consensus 41 G~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~-~~~~~~~~~~~~~lae~L~~~~p~~~-~~-~v~f~~SGseA~e 117 (445)
T PRK08593 41 GKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIH-YTPAYMYHEPLVRLAKKLCELAPGDF-EK-RVTFGLSGSDAND 117 (445)
T ss_pred CCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccC-ccccccCCHHHHHHHHHHHHhCCCCC-CC-EEEECCchHHHHH
Confidence 335788866521 222 368888899988876322 11111123445556666655432111 13 7999999999999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHH-HcCC-------------EEEEEEcCCC-C--CC-CC-------HHHHHh
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLS-MAGA-------------KIKCITLRPP-D--FA-IP-------IEELKS 237 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~-~~G~-------------~~~~v~~~~~-~--~~-~d-------~~~l~~ 237 (434)
.+++... ....+|+..+..|++...... ..+. .+..+|+.+. . +. .+ ++.+++
T Consensus 118 ~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 197 (445)
T PRK08593 118 GIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKE 197 (445)
T ss_pred HHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHH
Confidence 9987542 223568888888888644332 2221 1233433210 0 00 11 234444
Q ss_pred hcc-----cCCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEcc
Q 013883 238 TIS-----KNTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNS 311 (434)
Q Consensus 238 ~i~-----~~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S 311 (434)
.+. +++.+|++....+..|.+ ++.+.+++|.++|++||+++|+||+|.+|...|.......+.-.+| +.+
T Consensus 198 ~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pD----i~t 273 (445)
T PRK08593 198 MFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPD----LMS 273 (445)
T ss_pred HHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCC----Eee
Confidence 342 356677777667777886 6888899999999999999999999998866554333333322233 558
Q ss_pred CChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh----C
Q 013883 312 LGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA----V 387 (434)
Q Consensus 312 ~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~----~ 387 (434)
++|.+| .|+++|++++++++.+.+.......+++.++....++.+.|+..++ +++.++.+++-+++++.|++ .
T Consensus 274 ~gK~l~-~G~p~gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~ 350 (445)
T PRK08593 274 FGKSLA-GGMPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIED--ESLLQRSAEKGEYARKRFDQWVSKY 350 (445)
T ss_pred eccccc-CCcccEEEEEcHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999 8899999999999988775333345777888888888888875321 12344444444455555543 3
Q ss_pred CCEeecCCeeEEEeeecCCC---CCC---CHHHHHHHHHHhcCeEEEC
Q 013883 388 GFKVFPSSGTYFVVVDHTPF---GHE---TDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~Ll~~~GV~v~p 429 (434)
++......-|.++-+.+.+. ... ....++..+++ +||++.+
T Consensus 351 ~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~ 397 (445)
T PRK08593 351 NFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFE-HGVVIIA 397 (445)
T ss_pred CcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHH-CCeEEec
Confidence 33222222333333333211 110 12456667765 5999976
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-15 Score=154.55 Aligned_cols=302 Identities=16% Similarity=0.138 Sum_probs=184.6
Q ss_pred cCCeeEeCCCCCC--CC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFPN--FD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p~--~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...||+..|.-. +. .+|.+.+++.+++.+... +... .+++..+++.+.+.... .+ .+.++++++||..
T Consensus 98 G~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~~-~~~~---~~~~~~lAe~l~~~~p~---~~-~v~f~~SGsEA~e 169 (474)
T PLN02482 98 GNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTS-FGAP---CLLENVLAEMVIDAVPS---VE-MVRFVNSGTEACM 169 (474)
T ss_pred CCEEEEecccccccccCCCCHHHHHHHHHHHhhCCC-CCCC---CHHHHHHHHHHHHhCCC---CC-EEEEeCChHHHHH
Confidence 3457888766322 22 368899999999887542 2221 24566677777655421 34 7999999999999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHHHc---CC-----------------EEEEEEcCCCCCCCCHHHHHhhccc-
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLSMA---GA-----------------KIKCITLRPPDFAIPIEELKSTISK- 241 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~---G~-----------------~~~~v~~~~~~~~~d~~~l~~~i~~- 241 (434)
.+++... ...++|+...-.|+++.+.+... |. .+..+|+ -|++.+++.+..
T Consensus 170 ~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------nd~~~l~~~l~~~ 243 (474)
T PLN02482 170 GVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY------NDLEAVKKLFEAN 243 (474)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC------CChHHHHHHHHhC
Confidence 9887653 23467888888898865432110 10 0111111 168888888853
Q ss_pred --CCcEEEecCCCCCcccCCC-HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcc
Q 013883 242 --NTRAILMNTPHNPTGKMFT-REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSL 318 (434)
Q Consensus 242 --~~~~i~~~~p~NPTG~~~~-~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 318 (434)
+..+|++.......|.+.+ ++.|++|.++|++||+++|+||++.+| ..+.......+.-.+| +.+|+|.+|
T Consensus 244 ~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~PD----i~t~gK~lg- 317 (474)
T PLN02482 244 KGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITPD----LTTLGKVIG- 317 (474)
T ss_pred CCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCCCCC----EEEecchhh-
Confidence 3456666555666787654 677999999999999999999999887 4433222222222233 468899999
Q ss_pred ccceeeeEEeChhhHHHHHHH---hhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEee-
Q 013883 319 TGWKIGWAIAPPHLTWGVRQA---HSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKVF- 392 (434)
Q Consensus 319 ~G~R~G~~~~~~~~~~~l~~~---~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~- 392 (434)
.|+.+|.+++++++++.+... ....+++.+++...++.+.|+.. ++.++++.+.-+..++.|.+...+.|+.+.
T Consensus 318 gG~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~ 397 (474)
T PLN02482 318 GGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGILEAGKKAGHEMCG 397 (474)
T ss_pred CCCceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 899999999999998877532 12346667788877777777642 223333333333334444443344455544
Q ss_pred cCCeeEEE-eeecCCC-C-----CCC---HHHHHHHHHHhcCeEEECC
Q 013883 393 PSSGTYFV-VVDHTPF-G-----HET---DIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 393 ~~~~~~~~-~~~~~~~-~-----~~~---~~~~~~~Ll~~~GV~v~pG 430 (434)
...++++. .+.-.+. . ..+ ...+...+++ +||++.|.
T Consensus 398 ~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~-~Gv~~~~~ 444 (474)
T PLN02482 398 GYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLE-EGVYLAPS 444 (474)
T ss_pred cccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHH-CCeEEecc
Confidence 33344442 2211110 0 001 2356666766 49999874
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-15 Score=151.32 Aligned_cols=300 Identities=15% Similarity=0.114 Sum_probs=186.6
Q ss_pred cCCeeEeCCC--CCCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQG--FPNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g--~p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...+||..| ...+. .+|.+.+++.+++.+..+. ...-..+.+..+++.+.+..... .+ .++++++++||++
T Consensus 74 G~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~--~~~~~~~~~~~lAe~L~~~~p~~--~~-~v~f~~SGsEA~e 148 (442)
T TIGR03372 74 GNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLH--SQELLDPLRALLAKTLAALTPGK--LK-YSFFCNSGTESVE 148 (442)
T ss_pred CCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCc--ccccCCHHHHHHHHHHHHhCCCC--cC-EEEEeCCchHHHH
Confidence 3456888666 33333 3677888998888764321 11112345556666666543221 13 7899999999999
Q ss_pred HHHHHccC-----CCCeEEEcCCCchhHHHHHHHcCCE-------------EEEEEcCCCCCCCCHHHHHhhcc------
Q 013883 185 ATILGLIN-----PGDEVILFAPFYDSYEATLSMAGAK-------------IKCITLRPPDFAIPIEELKSTIS------ 240 (434)
Q Consensus 185 ~~~~~l~~-----~gd~Vlv~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~d~~~l~~~i~------ 240 (434)
.+++.... ....|+.....|++..........+ +..+|+ .|.+.+++.+.
T Consensus 149 ~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~------~d~~~~~~~l~~~~~~~ 222 (442)
T TIGR03372 149 AALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAF------GDIEAMLKALNECKKTG 222 (442)
T ss_pred HHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCC------CCHHHHHHHHHHHhcCC
Confidence 99875532 2367888899888865443332211 122222 25677776663
Q ss_pred cCCcEEEecCCCCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccc
Q 013883 241 KNTRAILMNTPHNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLT 319 (434)
Q Consensus 241 ~~~~~i~~~~p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 319 (434)
.+..+|++.......|... +++.+++|.++|++||+++|+||++.+|...|..+....+.-.+| +.+++|.+| .
T Consensus 223 ~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PD----ivt~gK~lg-~ 297 (442)
T TIGR03372 223 DDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPD----ILCLAKALG-G 297 (442)
T ss_pred CcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCC----eeeehhhhc-C
Confidence 2345666655566667755 677799999999999999999999998766665444433332344 445999999 8
Q ss_pred c-ceeeeEEeChhhHHHHHH--HhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC----C-C-E
Q 013883 320 G-WKIGWAIAPPHLTWGVRQ--AHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV----G-F-K 390 (434)
Q Consensus 320 G-~R~G~~~~~~~~~~~l~~--~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~-~ 390 (434)
| +.+|.+++++++.+.+.. .....+++.++.+..++.++|+..++ +++.++.+++-+++++.|+++ + . .
T Consensus 298 G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~--~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~ 375 (442)
T TIGR03372 298 GVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLE--KNLPAQAAIKGDFLLDGFQQLAAEYPDLII 375 (442)
T ss_pred CcccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 8 589999999998877632 12345777788888888888875321 123344455555555555443 2 1 2
Q ss_pred eecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 391 VFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
-+... |.++-+.+... .....+++.|++ +||++.+
T Consensus 376 ~vRG~-Gl~~giel~~~--~~~~~i~~~l~~-~Gvl~~~ 410 (442)
T TIGR03372 376 EARGK-GLLMAIEFRDN--EIGYAFAKELFQ-QNILVAG 410 (442)
T ss_pred EEecc-eEEEEEEeCCh--HHHHHHHHHHHH-CCcEEee
Confidence 22333 44445554321 123567777776 5999975
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-16 Score=153.85 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=123.5
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHH----HHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATL----SMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~ 223 (434)
..+|++.++++.+ .+ ..++++++++|+.+++.+++++||+|+++...|......+ ...|++++.++.
T Consensus 66 ~~~le~~lA~l~g--------~~-~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~ 136 (433)
T PRK08134 66 VAVLEERVAALEG--------GV-GAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKP 136 (433)
T ss_pred HHHHHHHHHHHhC--------CC-cEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECC
Confidence 4577888887765 23 4688888999999999999999999999999998765543 458999988875
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
+ |++.+++++++++++|++.+|+||+|.+.+ +++|+++|+++|+++|+|.++...... .++ ..
T Consensus 137 ~------d~~~l~~~i~~~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~~---~pl-----~~ 199 (433)
T PRK08134 137 G------DIDGWRAAIRPNTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYLL---RPF-----EH 199 (433)
T ss_pred C------CHHHHHHhcCCCCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCcccccC---Cch-----hc
Confidence 4 799999999999999999999999999985 677999999999999999998643211 111 12
Q ss_pred CceEEEccCChhhccccceeeeEEe
Q 013883 304 ERTVTMNSLGKTFSLTGWKIGWAIA 328 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G~R~G~~~~ 328 (434)
+-.+++.|.+|.+|-+|-.+|.++.
T Consensus 200 GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 200 GADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred CCCEEEeccccccCCCCCceEEEEE
Confidence 3458899999999766665666554
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-15 Score=151.30 Aligned_cols=300 Identities=13% Similarity=0.105 Sum_probs=182.1
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCC-CCCCC---CC---cHHHHHHHHHHHHhhcCCCCCCCCcEEEc---CCh
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKN-QYARG---HG---VPEFNSAIASRFKKDSGLEVDPEKEVTVT---SGC 179 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~-~Y~~~---~G---~~~lr~~ia~~l~~~~g~~~~~~~~i~~t---~G~ 179 (434)
+.|+|-..++- .++.+++++...+.+... .|+.. .| ...+.+...+.+.+.+| .+++ ++.++ +++
T Consensus 35 ~~l~l~~sen~--~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~--a~~~-~~~~~~~~~sg 109 (452)
T PTZ00094 35 EGLELIASENF--TSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFG--LDPE-EWGVNVQPYSG 109 (452)
T ss_pred cCeeEeccccc--CCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhC--CCcc-cceeecCCCch
Confidence 67888655432 356677777666654211 11111 12 22222212223333344 3455 56555 788
Q ss_pred HHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHH----------cCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEe
Q 013883 180 TEAIAATILGLINPGDEVILFAPFYDSYEATLSM----------AGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILM 248 (434)
Q Consensus 180 ~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~----------~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~ 248 (434)
++++..++.+++++||.|++....+..+...... .+.++..++.+. ++.+|++.++++++. +++++++
T Consensus 110 t~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~g~id~~~L~~~l~~~~~~lvi~ 188 (452)
T PTZ00094 110 SPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNE-KGLIDYDKLEELAKAFRPKLIIA 188 (452)
T ss_pred HHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCC-CCCcCHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999987777665432211 112334444554 588999999999965 6777665
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEe
Q 013883 249 NTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA 328 (434)
Q Consensus 249 ~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~ 328 (434)
. ++.+|...+ +++|.++|+++|+++++|+++.......+.... .+ .+..+++.|.+|+++ |.+.|++++
T Consensus 189 ~--~s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~-~~---~~~D~l~~S~hK~l~--GP~Gg~l~~ 257 (452)
T PTZ00094 189 G--ASAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVAAGVLPS-PF---PYADVVTTTTHKSLR--GPRSGLIFY 257 (452)
T ss_pred e--CCCCCCccC---HHHHHHHHHHcCCEEEEeccchhccccCCCCCC-CC---CCCcEEEcCCccCCC--CCCceEEEE
Confidence 3 445998885 556788899999999999999875543321111 11 134588999999873 444588888
Q ss_pred ChhhHHHHHHHhhcc--c---cCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCC-eeEEEe
Q 013883 329 PPHLTWGVRQAHSFL--T---FATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSS-GTYFVV 401 (434)
Q Consensus 329 ~~~~~~~l~~~~~~~--~---~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~ 401 (434)
++++.+.+....... + .+++.....++..+|+.. ....++.++++.++++.+.+.|.+.|+++..+. ......
T Consensus 258 ~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~~~~~~~ 337 (452)
T PTZ00094 258 RKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGYDLVTGGTDNHLVL 337 (452)
T ss_pred ecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCCCCceEe
Confidence 776654443221111 1 133444455555556543 223556778889999999999988898876422 122344
Q ss_pred eecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 402 VDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 402 ~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
+.+...+. +..++...| +++||.+.
T Consensus 338 v~~~~~~~-~~~~~~~~L-~~~gI~vs 362 (452)
T PTZ00094 338 VDLRPFGI-TGSKMEKLL-DAVNISVN 362 (452)
T ss_pred ecCCcCCC-CHHHHHHHH-HHCCcEEe
Confidence 44433333 355555555 77899994
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.8e-15 Score=148.05 Aligned_cols=295 Identities=17% Similarity=0.161 Sum_probs=183.8
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCC-----CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGK-----NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~-----~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
.+.+.|..+.-+ +.|+.+.+++.+.+.... ..+....+...+.+++.+ + +..| .+++ +|++++|+++++
T Consensus 26 ~~~iyld~~a~g-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g--~~~~-~v~~~~~~t~~l 99 (406)
T TIGR01814 26 NAVIYLDGNSLG-LMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVG--AKED-EVVVMNTLTINL 99 (406)
T ss_pred CCcEEecCCCcC-cCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccC--CCCC-cEEEeCCchHHH
Confidence 357888866544 347778888876654311 111101122233333322 2 3444 4566 899999999999
Q ss_pred HHHHHHccCCC---CeEEEcCCCchhHHH----HHHHcCCEE----EEEEcCCCCCCCCHHHHHhhcc---cCCcEEEec
Q 013883 184 AATILGLINPG---DEVILFAPFYDSYEA----TLSMAGAKI----KCITLRPPDFAIPIEELKSTIS---KNTRAILMN 249 (434)
Q Consensus 184 ~~~~~~l~~~g---d~Vlv~~p~y~~~~~----~~~~~G~~~----~~v~~~~~~~~~d~~~l~~~i~---~~~~~i~~~ 249 (434)
..++.++++++ +.|++.+..|+.... .++..|+++ +.++.++ ++.+|++.+++.++ +++++|+++
T Consensus 100 ~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~l~~~~~~~~~~t~lv~~~ 178 (406)
T TIGR01814 100 HLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPRE-EETLRLEDILDTIEKNGDDIAVILLS 178 (406)
T ss_pred HHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCC-CCccCHHHHHHHHHhcCCCeEEEEEe
Confidence 99999887664 357888888887332 345678887 3454442 56788999988774 689999999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhc-cccceeeeEEe
Q 013883 250 TPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIA 328 (434)
Q Consensus 250 ~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~ 328 (434)
+++|.||..++ +++|+++|+++|+++++|+++..... ...+.. .+-.+++.|..|.++ -+| .| ++.
T Consensus 179 ~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~G~~---~id~~~----~gvD~~~~s~hK~l~g~pG--~~-l~v 245 (406)
T TIGR01814 179 GVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHAVGNV---PLDLHD----WGVDFACWCTYKYLNAGPG--AG-AFV 245 (406)
T ss_pred ccccccceecC---HHHHHHHHHHcCCEEEEEcccccCCc---cccccc----CCCCEEEEcCccccCCCCC--eE-EEE
Confidence 99999999995 67788999999999999999986321 122221 234588999999874 244 33 443
Q ss_pred ChhhHHHHHHH-h----------------------hccccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHh
Q 013883 329 PPHLTWGVRQA-H----------------------SFLTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGL 384 (434)
Q Consensus 329 ~~~~~~~l~~~-~----------------------~~~~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L 384 (434)
.++....+... . ++...+++.+...++..+|+.. +..+++.+++.++..+++++.|
T Consensus 246 ~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l 325 (406)
T TIGR01814 246 HEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELI 325 (406)
T ss_pred ehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 33322222110 0 0011234455555555566532 2235667788888888888888
Q ss_pred hhC-----CCEeecCC-----eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 385 NAV-----GFKVFPSS-----GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 385 ~~~-----g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
++. |+.+..+. ++++ .+.++ . +..+++++|.+ +||.+..
T Consensus 326 ~~~~~~~~~~~i~~~~~~~~r~~~v-~~~~~---~-~~~~~~~~L~~-~gi~v~~ 374 (406)
T TIGR01814 326 KARCGGPPVLTIITPRDHAQRGCQL-SLTHP---V-PGKAVFQALIK-RGVIGDK 374 (406)
T ss_pred HhhcCCCCceEEeCCCChhhcCCeE-EEEec---C-CHHHHHHHHHH-CCEEEec
Confidence 764 36666442 2333 33332 1 46678888854 5998764
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.6e-15 Score=147.96 Aligned_cols=304 Identities=13% Similarity=0.078 Sum_probs=180.5
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHc-CCC-----C-CCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEE---cCCh
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRD-GKN-----Q-YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTV---TSGC 179 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~-~~~-----~-Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~---t~G~ 179 (434)
..|+|--.++ ...+.+++++...+.+ -.. + |+....+.++.+...+...+.++.. .+ .+.+ .+++
T Consensus 35 ~~l~liasen--~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~--~~-~~~~nv~~~SG 109 (475)
T PLN03226 35 KGLELIASEN--FTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLD--PE-KWGVNVQPLSG 109 (475)
T ss_pred cCeeEecCCc--cCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCC--cc-eeEEecCcCch
Confidence 5566644332 1356677777777633 111 2 2222233344443333344444432 22 3333 2566
Q ss_pred HHHHHHHHHHccCCCCeEEEcCC---CchhHHHHHHH---cCCE--EE--EEEcCCCCCCCCHHHHHhhccc-CCcEEEe
Q 013883 180 TEAIAATILGLINPGDEVILFAP---FYDSYEATLSM---AGAK--IK--CITLRPPDFAIPIEELKSTISK-NTRAILM 248 (434)
Q Consensus 180 ~~ai~~~~~~l~~~gd~Vlv~~p---~y~~~~~~~~~---~G~~--~~--~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~ 248 (434)
+.|+..++.++++|||+|+..+. .|..|...... .+.. +. .++.+++++.+|++++++.+.. ++++|++
T Consensus 110 ~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~ 189 (475)
T PLN03226 110 SPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIA 189 (475)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEE
Confidence 88999999999999999998553 44444332211 1222 22 3344556788999999998864 6776655
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEe
Q 013883 249 NTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA 328 (434)
Q Consensus 249 ~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~ 328 (434)
. .++ +|... ++++|.++|+++|+++++|+++.......+... ..+ ....+++.|++|+++ |.+.|++++
T Consensus 190 ~-~S~-~s~~~---D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~-~p~---~~~Div~~t~hK~L~--GP~Gg~I~~ 258 (475)
T PLN03226 190 G-ASA-YPRDW---DYARMRKIADKVGALLMCDMAHISGLVAAQEAA-SPF---EYCDVVTTTTHKSLR--GPRGGMIFF 258 (475)
T ss_pred e-cCc-CCCcc---CHHHHHHHHHHcCCEEEEEchhhhCcccCCCCC-CCC---CCCeEEEecCccccc--CCCceEEEE
Confidence 3 333 66666 466788999999999999999986554432211 111 134488999999983 455589888
Q ss_pred ChhhH-----------HHHHHHhh---cc-ccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCEee
Q 013883 329 PPHLT-----------WGVRQAHS---FL-TFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFKVF 392 (434)
Q Consensus 329 ~~~~~-----------~~l~~~~~---~~-~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 392 (434)
+++.+ +....... .. ..+++.....++..+|+.. ....++.+++..++.++|.+.|.+.|++++
T Consensus 259 ~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~G~~l~ 338 (475)
T PLN03226 259 RKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSKGYKLV 338 (475)
T ss_pred chhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 87544 22111111 11 1223333333444445532 122456678889999999999999999987
Q ss_pred cC-CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 393 PS-SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 393 ~~-~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
.+ ..+..+++++.+.+. ++.++.+ .+++.||.+..+.
T Consensus 339 ~~~t~~hi~lv~~~~~gi-~~~~~~~-~L~~~~I~~nk~~ 376 (475)
T PLN03226 339 TGGTDNHLVLWDLRPLGL-TGSRVEK-VLDLAHITLNKNA 376 (475)
T ss_pred cCCCCCCEEEEEccCCCC-CHHHHHH-HHHHCCCEECCCC
Confidence 63 235677788766655 3544544 4577899997653
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=152.64 Aligned_cols=310 Identities=15% Similarity=0.113 Sum_probs=181.5
Q ss_pred cCCeeEeCCCCCC--CC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFPN--FD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p~--~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...||+..|+-. +. .+|.+.+++.+++........+ .+.+..+++.+.+..+. ..+ .+.+++++++|++
T Consensus 52 G~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~----~~~~~~la~~L~~~~~~--~~~-~v~f~~SGsEA~e 124 (433)
T PRK00615 52 GKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGTSYGLT----SEQEILFAEELFSYLGL--EDH-KIRFVSSGTEATM 124 (433)
T ss_pred CCEEEEcccchhccccCCCCHHHHHHHHHHHHhCCCCCCC----CHHHHHHHHHHHHhCCC--CcC-EEEEeCchHHHHH
Confidence 3357888766322 22 3688888999888764321111 23445566666544432 124 7999999999999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHH----HHHcCCE---E-EEE--EcCCCC----CCCCHHHHHhhccc---CCcE
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEAT----LSMAGAK---I-KCI--TLRPPD----FAIPIEELKSTISK---NTRA 245 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~----~~~~G~~---~-~~v--~~~~~~----~~~d~~~l~~~i~~---~~~~ 245 (434)
.+++... ....+|+...-.|+++.+. ....+.. . ..+ +..... ..-|++.+++.+.. +..+
T Consensus 125 ~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aa 204 (433)
T PRK00615 125 TAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAG 204 (433)
T ss_pred HHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEE
Confidence 9987653 2235788888888886422 1111100 0 000 000000 01267888888753 3455
Q ss_pred EEecCCCCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceee
Q 013883 246 ILMNTPHNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIG 324 (434)
Q Consensus 246 i~~~~p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G 324 (434)
|++.......|... +++.+++|.++|++||+++|+||++.++ ..|.......+.-.+| +.+|+|.+| .|+.+|
T Consensus 205 vI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~PD----i~~~gK~lg-gG~p~~ 278 (433)
T PRK00615 205 VIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPD----ITVYGKILG-GGLPAA 278 (433)
T ss_pred EEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCCCCC----eEEEccccc-CCccee
Confidence 66655466667755 5677999999999999999999999887 3343222222222233 335899998 788899
Q ss_pred eEEeChhhHHHHHHHh---hccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEE
Q 013883 325 WAIAPPHLTWGVRQAH---SFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYF 399 (434)
Q Consensus 325 ~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 399 (434)
++++++++++.+.... ...+++.++....++.+.|+.. ++.++++.+.-...++.|++.+.+.|+.+.....|.+
T Consensus 279 av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r~G~~ 358 (433)
T PRK00615 279 AVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVRYGSM 358 (433)
T ss_pred eeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeceE
Confidence 9999999988775321 2235666788888888877642 2223333333333344445555555654322123444
Q ss_pred EeeecCCCCC-----------CCHHHHHHHHHHhcCeEEECCC
Q 013883 400 VVVDHTPFGH-----------ETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 400 ~~~~~~~~~~-----------~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+.+.+..... +....+...|+++ ||++.|+.
T Consensus 359 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~ 400 (433)
T PRK00615 359 FSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSK-GVYLSPSP 400 (433)
T ss_pred EEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHC-CeeecCcc
Confidence 4444422110 0123566777665 99998863
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.6e-15 Score=149.72 Aligned_cols=310 Identities=14% Similarity=0.063 Sum_probs=186.5
Q ss_pred cCCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCC-CCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 108 KHGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARG-HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 108 ~~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~-~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
+...|||..|.- .+. .+|.+.+++.+++++..+ +... .-..+.+..+++.+.+.... +.+ .+++++++++|+
T Consensus 49 G~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~-~~~~~~~~~~~~~~lAe~L~~~~p~--~~~-~v~f~~sGSEAv 124 (461)
T PRK07482 49 GRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAY-YHTYVGHGTEASITLSKRIIDRAPA--GMS-KVYYGLSGSDAN 124 (461)
T ss_pred CCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCc-cccccccCCHHHHHHHHHHHHhCCC--CcC-EEEEeCchHHHH
Confidence 346788877632 122 367888899998876421 1111 11235566677777654322 234 799999999999
Q ss_pred HHHHHHcc------C-C-CCeEEEcCCCchhHHHHHHHc-CC------------EEEEEEcCCC-C---CC--------C
Q 013883 184 AATILGLI------N-P-GDEVILFAPFYDSYEATLSMA-GA------------KIKCITLRPP-D---FA--------I 230 (434)
Q Consensus 184 ~~~~~~l~------~-~-gd~Vlv~~p~y~~~~~~~~~~-G~------------~~~~v~~~~~-~---~~--------~ 230 (434)
+.+++... . + ..+|+.....|++.......+ |. .+..++.... . .+ .
T Consensus 125 e~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 204 (461)
T PRK07482 125 ETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAY 204 (461)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHH
Confidence 99988653 1 2 357888888888854322221 10 1122221110 0 00 1
Q ss_pred CHHHHHhhcc----cCCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCc
Q 013883 231 PIEELKSTIS----KNTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYER 305 (434)
Q Consensus 231 d~~~l~~~i~----~~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~ 305 (434)
+++.+++.+. +++.+|++...+...|++ ++.+.+++|.++|++||+++|+||++.+|...|.......+.-.+|
T Consensus 205 ~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PD- 283 (461)
T PRK07482 205 CADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPD- 283 (461)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCC-
Confidence 3577777773 245666665556666776 5677899999999999999999999999976665544444433344
Q ss_pred eEEEccCChhhccccc-eeeeEEeChhhHHHHHHH-------hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 013883 306 TVTMNSLGKTFSLTGW-KIGWAIAPPHLTWGVRQA-------HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKK 377 (434)
Q Consensus 306 ~i~i~S~SK~~g~~G~-R~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~ 377 (434)
+-+++|.++ .|+ .+|.+++.+++.+.+... ....+++.++++.+++.+.|+..++ +++.++.+++-
T Consensus 284 ---iv~~gKgl~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~--~~l~~~~~~~g 357 (461)
T PRK07482 284 ---LITVAKGLT-SAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILER--ENLVGNAAEVG 357 (461)
T ss_pred ---EEEEccccc-cCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHh--CCHHHHHHHHH
Confidence 555799998 785 899999999887766521 1234788889998888888875321 12333344444
Q ss_pred HHHHHHhh----hCCCEeecCCeeEEEeeecCCCC-----CCC----HHHHHHHHHHhcCeEEEC
Q 013883 378 AILVEGLN----AVGFKVFPSSGTYFVVVDHTPFG-----HET----DIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 378 ~~l~~~L~----~~g~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~Ll~~~GV~v~p 429 (434)
+++.+.|+ +.++......-|.++-+.+.... ... ...++..+++ .||++.+
T Consensus 358 ~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~ 421 (461)
T PRK07482 358 AYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALE-RGVIARA 421 (461)
T ss_pred HHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHH-CCcEEec
Confidence 44444444 34433222233444444442111 011 2356666665 5999865
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-15 Score=136.74 Aligned_cols=288 Identities=18% Similarity=0.202 Sum_probs=187.2
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCC
Q 013883 124 PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPF 203 (434)
Q Consensus 124 ~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~ 203 (434)
...+++++.++.-. ..-|+...-...|.+.+|+.++ .|..+++++|....+..++..+-++|.+|++.+-.
T Consensus 35 TdeMr~am~eA~vg-DdVyGeD~tt~rLE~~vA~l~G--------KEAgLFv~SGTmgNllaIm~Hc~~rg~eii~gd~~ 105 (384)
T KOG1368|consen 35 TDEMRRAMAEASVG-DDVYGEDPTTNRLEQRVAELFG--------KEAGLFVPSGTMGNLLAIMVHCHQRGSEIIVGDRA 105 (384)
T ss_pred hHHHHHHHhhcccC-cccccCCccHHHHHHHHHHHhC--------ccceeeecccccccHHHHHHHhcCCCceEEeccch
Confidence 45666666665432 3345444445789999999887 33256777775555554444445699999998876
Q ss_pred chhHHH---HHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc--------CCcEEEecCCCCCcc-cCCCHHHHHHHHHHH
Q 013883 204 YDSYEA---TLSMAGAKIKCITLRPPDFAIPIEELKSTISK--------NTRAILMNTPHNPTG-KMFTREELNVIASLC 271 (434)
Q Consensus 204 y~~~~~---~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~--------~~~~i~~~~p~NPTG-~~~~~e~l~~i~~la 271 (434)
+--.+. +....|+.++++...+ ++.+|++++|+++.. -+++|++.|-||-+| .++|.|++.+|.+||
T Consensus 106 HI~~~E~gg~s~l~gv~~~tv~~e~-dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~la 184 (384)
T KOG1368|consen 106 HIHRYEQGGISQLAGVHVRTVKNEN-DGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALA 184 (384)
T ss_pred heeehhccChhhhccceeEeeeeCC-CCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHH
Confidence 654322 3455677777776543 778999999999973 478999998877776 999999999999999
Q ss_pred HHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceee-eEEeChhhHHHHHHHhhccccCC--c
Q 013883 272 IENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIG-WAIAPPHLTWGVRQAHSFLTFAT--S 348 (434)
Q Consensus 272 ~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G-~~~~~~~~~~~l~~~~~~~~~~~--~ 348 (434)
++||+.+..|.+--+-+--....++..+....|.+-+ -+||.+|.| +| .++++++++++.+..+.....+. +
T Consensus 185 k~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsi--CLSKglgAP---VGSViVG~k~FI~kA~~~RKalGGGmRQs 259 (384)
T KOG1368|consen 185 KRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSI--CLSKGLGAP---VGSVIVGSKDFIDKARHFRKALGGGMRQS 259 (384)
T ss_pred hccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhh--hhhccCCCC---cccEEEccHHHHHHHHHHHHHhcCchhHH
Confidence 9999999999885432211122334433333332222 489999854 55 77789999988776665544443 4
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC-CEeecC--CeeEEEeeecCCCCCCCHHHHHHHHHHhcCe
Q 013883 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG-FKVFPS--SGTYFVVVDHTPFGHETDIAFCEYLIKEVGV 425 (434)
Q Consensus 349 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV 425 (434)
....+|++.+|.+.. ..+ ..-.++...+.+.++..+ +++..+ +.++ +.+.+..... +.++++.++ ++.||
T Consensus 260 GvLaaaaLval~~~~---~~L-~~dHk~A~~lAe~~~~~~~i~v~v~a~etNi-v~~~l~q~~~-~~~~l~~~~-~k~gi 332 (384)
T KOG1368|consen 260 GVLAAAALVALDENV---PLL-RADHKRAKELAEYINTPEEIRVEVPAVETNI-VNMVLCQARL-TAEELCKFL-EKNGI 332 (384)
T ss_pred HHHHHHHHHHhhcch---HHH-HHHHHHHHHHHHHhccccceeeecchhhcce-eeeecccccC-CHHHHHHHH-HHCCe
Confidence 444555556666532 222 223445556666676664 665433 5554 4444433333 688898888 56799
Q ss_pred EEECCCCC
Q 013883 426 VAIPTSVF 433 (434)
Q Consensus 426 ~v~pG~~F 433 (434)
.+.+|..+
T Consensus 333 ~lm~~~s~ 340 (384)
T KOG1368|consen 333 LLMGGASR 340 (384)
T ss_pred EEeecccc
Confidence 99998654
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-15 Score=149.36 Aligned_cols=309 Identities=16% Similarity=0.101 Sum_probs=188.6
Q ss_pred cCCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...||+..|. -.+. .+|.+.+++.+++.+..+....... .+.+..+++.+.+..... .+ .+++++++++|++
T Consensus 51 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~-~~~~~~la~~l~~~~p~~--~~-~v~f~~sGseAve 126 (460)
T PRK06541 51 GKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWSYA-HPPAIELAERLAALAPGD--LN-RVFFTTGGSEAVE 126 (460)
T ss_pred CCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCccccccC-CHHHHHHHHHHHHhCCCC--cC-EEEEcCCcHHHHH
Confidence 34678887662 2222 3677888998888764221111112 244555666666543221 24 7999999999999
Q ss_pred HHHHHccC--------CCCeEEEcCCCchhHHHHHHHc-CC------------EEEEEEcCCC----CCCCC--------
Q 013883 185 ATILGLIN--------PGDEVILFAPFYDSYEATLSMA-GA------------KIKCITLRPP----DFAIP-------- 231 (434)
Q Consensus 185 ~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~-G~------------~~~~v~~~~~----~~~~d-------- 231 (434)
.+++.... ...+|+...-.|++........ |. .+..+|.... .++-+
T Consensus 127 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
T PRK06541 127 SAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWA 206 (460)
T ss_pred HHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHH
Confidence 98875431 1367888888888865433221 11 1222332210 01112
Q ss_pred HHHHHhhcc---cCCcEEEecCC-CCCcccCCC-HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCce
Q 013883 232 IEELKSTIS---KNTRAILMNTP-HNPTGKMFT-REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERT 306 (434)
Q Consensus 232 ~~~l~~~i~---~~~~~i~~~~p-~NPTG~~~~-~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~ 306 (434)
++.+++.+. .+..+.++..| +++.|.+.+ .+.+++|.++|++||+++|+||+|.+|...|.......+.-.+|
T Consensus 207 ~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PD-- 284 (460)
T PRK06541 207 ADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPD-- 284 (460)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCC--
Confidence 366777774 23445555556 899998765 88899999999999999999999988754444333322222233
Q ss_pred EEEccCChhhccccc-eeeeEEeChhhHHHHHHHh----hccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 013883 307 VTMNSLGKTFSLTGW-KIGWAIAPPHLTWGVRQAH----SFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILV 381 (434)
Q Consensus 307 i~i~S~SK~~g~~G~-R~G~~~~~~~~~~~l~~~~----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~ 381 (434)
+.+|+|.++ .|+ ++|++++++++.+.+.... ...+++.+++...++.+.|+..+ -+++.++++++.+++.
T Consensus 285 --ivt~gK~l~-~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~--~~~~~~~~~~~g~~l~ 359 (460)
T PRK06541 285 --IITCAKGIT-SGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFE--REGLLDHVRDNEPAFR 359 (460)
T ss_pred --EEEeccccc-CCccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHH
Confidence 336999999 898 9999999999987765321 12366777788888887777522 1235577777888888
Q ss_pred HHhhhC-CCE---eecCCeeEEEeeecCCC-----CCCCH-------HHHHHHHHHhcCeEEEC
Q 013883 382 EGLNAV-GFK---VFPSSGTYFVVVDHTPF-----GHETD-------IAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 382 ~~L~~~-g~~---~~~~~~~~~~~~~~~~~-----~~~~~-------~~~~~~Ll~~~GV~v~p 429 (434)
+.|+++ .+. .+...|.|+. +.+... ..... ..+...|++ +||++.|
T Consensus 360 ~~L~~l~~~~~v~~vrg~Gl~~~-ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~ 421 (460)
T PRK06541 360 ATLEKLLDLPIVGDVRGDGYFYG-IELVKDKATKETFTDDESERLLRGFLSPALFE-AGLYCRA 421 (460)
T ss_pred HHHHHhhcCCCeEEEEecceEEE-EEEecCcccccCCcchhhhhhHHHHHHHHHHh-CCeEEEe
Confidence 887765 222 2345555543 333110 01000 245566665 5999987
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-14 Score=145.10 Aligned_cols=271 Identities=13% Similarity=0.081 Sum_probs=182.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCCC--CCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHH---------H
Q 013883 144 RGHGVPEFNSAIASRFKKDSGLEVDP--EKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATL---------S 212 (434)
Q Consensus 144 ~~~G~~~lr~~ia~~l~~~~g~~~~~--~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~---------~ 212 (434)
....+.++.....+...+.+|.+... - +|..-+| +.|+.+++.++++|||+|+..+..+.+|.... .
T Consensus 188 G~~~iD~iE~la~era~~lF~~~~~~~ga-NVQp~SG-s~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs 265 (586)
T PLN02271 188 GNQYIDQIERLCCERALAAFGLDSEKWGV-NVQPYSC-TSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVS 265 (586)
T ss_pred CChhHHHHHHHHHHHHHHHhCCccccccc-ceeeccH-HHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccc
Confidence 33344566666666666667644211 2 4656655 88888899999999999999888888765432 3
Q ss_pred HcCCEEEEEE--cCCCCCCCCHHHHHh-hcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCcccc
Q 013883 213 MAGAKIKCIT--LRPPDFAIPIEELKS-TISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAF 289 (434)
Q Consensus 213 ~~G~~~~~v~--~~~~~~~~d~~~l~~-~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~ 289 (434)
..|..+..++ ++++++.+|.|++++ +...++|+|++..-.|| ..+ ++++|.++|+++|+++++|.++.....
T Consensus 266 ~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Sayp--r~~---D~~~i~eIAdevGA~LmvD~AH~aGLI 340 (586)
T PLN02271 266 GASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYP--REW---DYARFRQIADKCGAVLMCDMAHISGLV 340 (586)
T ss_pred cccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEECchhcc--CcC---CHHHHHHHHHHcCCEEEEECccccccc
Confidence 3565555555 555678999999998 66779999998777777 444 466788899999999999999976544
Q ss_pred CCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh--------------------hHHHHHHHhhccc-cCCc
Q 013883 290 EMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH--------------------LTWGVRQAHSFLT-FATS 348 (434)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~--------------------~~~~l~~~~~~~~-~~~~ 348 (434)
.++... ..+ ....++..|..|++ .|.|.|.+..+++ +.+++........ .++.
T Consensus 341 a~g~~~-sP~---~~aDvvt~TTHKtL--rGPrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGph 414 (586)
T PLN02271 341 AAKECV-NPF---DYCDIVTSTTHKSL--RGPRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPH 414 (586)
T ss_pred ccCcCC-CCC---cCCcEEEeCCcccC--CCCCceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChh
Confidence 332110 001 12348899999997 4788899888753 3333333222211 1222
Q ss_pred hHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecC-CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 349 TPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFKVFPS-SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 349 ~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
.....+.+.++... ....++..++..++.+.|.+.|.+.|++++.. ..++.+++++.+.+. +-..+++++++.||.
T Consensus 415 n~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~--~G~~ae~~Le~~~I~ 492 (586)
T PLN02271 415 NNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGL--TGKNYEKVCEMCHIT 492 (586)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCC--CHHHHHHHHHHcCeE
Confidence 22233334445531 22236778888999999999999999998743 356788999877664 336667788999998
Q ss_pred EEC
Q 013883 427 AIP 429 (434)
Q Consensus 427 v~p 429 (434)
+..
T Consensus 493 ~Nk 495 (586)
T PLN02271 493 LNK 495 (586)
T ss_pred ecc
Confidence 853
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-15 Score=146.02 Aligned_cols=217 Identities=22% Similarity=0.283 Sum_probs=154.2
Q ss_pred CCCCCCCCc---HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHH----
Q 013883 140 NQYARGHGV---PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLS---- 212 (434)
Q Consensus 140 ~~Y~~~~G~---~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~---- 212 (434)
..|... |. ..|.+.++++.+ .+ .++++++|..|+..++.+++++||.|++....|.+....++
T Consensus 47 ~~Y~R~-gnPt~~~le~~la~Le~--------g~-~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~ 116 (386)
T PF01053_consen 47 YIYSRY-GNPTVRALEQRLAALEG--------GE-DALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLP 116 (386)
T ss_dssp CSBTTT-C-HHHHHHHHHHHHHHT---------S-EEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHH
T ss_pred cceecc-ccccHHHHHHHHHHhhc--------cc-ceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhc
Confidence 455554 32 245555555543 24 68888999999999999999999999999999999776655
Q ss_pred HcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcC-cEEEEcCcCCccccCC
Q 013883 213 MAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIEND-VLVFSDEVYDKLAFEM 291 (434)
Q Consensus 213 ~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~-~~iI~Deay~~~~~~~ 291 (434)
..|.++..++.. |++.+++++++++++|++.+|.||+..+. ++++|+++|+++| +++|+|+.+.....-
T Consensus 117 ~~gv~v~~~d~~------d~~~l~~~l~~~t~~v~~EspsNP~l~v~---Dl~~i~~~a~~~g~~~~vVDnT~atp~~~- 186 (386)
T PF01053_consen 117 RFGVEVTFVDPT------DLEALEAALRPNTKLVFLESPSNPTLEVP---DLEAIAKLAKEHGDILVVVDNTFATPYNQ- 186 (386)
T ss_dssp HTTSEEEEESTT------SHHHHHHHHCTTEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTTC-
T ss_pred ccCcEEEEeCch------hHHHHHhhccccceEEEEEcCCCcccccc---cHHHHHHHHHHhCCceEEeeccccceeee-
Confidence 479999887544 79999999999999999999999998887 7888999999998 999999999653211
Q ss_pred CCccccCCCCCCCceEEEccCChhhc-cccceeeeEEeCh--hhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHH
Q 013883 292 DHISIASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIAPP--HLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEE 368 (434)
Q Consensus 292 ~~~~~~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~~~--~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~ 368 (434)
..+ ..+-.+++.|.+|.++ ....=.|.++++. ++.+.++..........++...+.+..-|+. +.-
T Consensus 187 -----~pL--~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~T----l~~ 255 (386)
T PF01053_consen 187 -----NPL--ELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRT----LPL 255 (386)
T ss_dssp ------GG--GGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTT----HHH
T ss_pred -----ccC--cCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCc----HHH
Confidence 111 1234589999999985 2333378888764 7777777776655566666666666666665 344
Q ss_pred HHHHHHHHHHHHHHHhhhC
Q 013883 369 LKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~ 387 (434)
..++..++...+.+.|++.
T Consensus 256 R~~~~~~nA~~lA~~L~~h 274 (386)
T PF01053_consen 256 RMERQNENAEALAEFLEEH 274 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4566677777888888875
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-15 Score=147.26 Aligned_cols=208 Identities=14% Similarity=0.177 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHH----HHcCCEEEEEEcCC
Q 013883 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATL----SMAGAKIKCITLRP 225 (434)
Q Consensus 150 ~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~~~ 225 (434)
.|.+.++++-+ .+ ..+++++++.|+..++.+++++||.|++.+..|.+....+ +..|+++..++..
T Consensus 66 ~le~~la~LEg--------~~-~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~- 135 (395)
T PRK08114 66 SLQEAMCELEG--------GA-GCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPL- 135 (395)
T ss_pred HHHHHHHHHhC--------CC-eEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCC-
Confidence 45555555432 33 5677777899999999999999999999999998766554 6689999887643
Q ss_pred CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHc--CcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 226 PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIEN--DVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 226 ~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~--~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
|.+.+++++++++|+|++.+|.||+|.+. ++++|+++|+++ |+++|+|.++..... ..... .
T Consensus 136 -----d~~~l~~~l~~~TrlV~~EtpsNp~~~v~---DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~----~~pl~----~ 199 (395)
T PRK08114 136 -----IGADIAKLIQPNTKVVFLESPGSITMEVH---DVPAIVAAVRSVNPDAVIMIDNTWAAGVL----FKALD----F 199 (395)
T ss_pred -----CHHHHHHhcCCCceEEEEECCCCCCCEee---cHHHHHHHHHHhCCCCEEEEECCCccccc----cCHHH----c
Confidence 67899999999999999999999999998 577799999998 499999999965221 11111 2
Q ss_pred CceEEEccCChhhccc-cceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSLT-GWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVE 382 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~-G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~ 382 (434)
+-.+++.|.+|.++-+ ..-.|.++.+++..+.++..........++...+.+..-|+. +.-..++..++...+.+
T Consensus 200 GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~T----L~lR~~~~~~na~~va~ 275 (395)
T PRK08114 200 GIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRGLRT----LGVRLRQHEESSLKVAE 275 (395)
T ss_pred CCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCc----HHHHHHHHHHHHHHHHH
Confidence 3458999999988533 357888888877766666555544445555555544444443 34445666777777888
Q ss_pred HhhhC
Q 013883 383 GLNAV 387 (434)
Q Consensus 383 ~L~~~ 387 (434)
.|++.
T Consensus 276 ~L~~h 280 (395)
T PRK08114 276 WLAEH 280 (395)
T ss_pred HHHcC
Confidence 88764
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-15 Score=149.52 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH----HHHcCCEEEEEEcC
Q 013883 149 PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT----LSMAGAKIKCITLR 224 (434)
Q Consensus 149 ~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~~ 224 (434)
..|++.++++.+ .+ ..+++++++.|+..++.+++++||+|++....|.+.... +...|++++.++ +
T Consensus 72 ~~Le~~lA~l~g--------~~-~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d 141 (436)
T PRK07812 72 DVVEQRIAALEG--------GV-AALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-D 141 (436)
T ss_pred HHHHHHHHHHhC--------CC-eEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-C
Confidence 466677766654 23 466667778899999999999999999999888876543 344788877774 2
Q ss_pred CCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCC
Q 013883 225 PPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYE 304 (434)
Q Consensus 225 ~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~ 304 (434)
. .|++.+++++++++++|++.+|+||+|.+.+ +++|+++|+++|+++|+|+++..... ...+ ..+
T Consensus 142 ~----~d~e~l~~ai~~~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~------~~pl--~~G 206 (436)
T PRK07812 142 P----DDLDAWRAAVRPNTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYL------IRPL--EHG 206 (436)
T ss_pred C----CCHHHHHHhCCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc------CCch--hcC
Confidence 1 2899999999999999999999999999985 66788999999999999998764211 1111 123
Q ss_pred ceEEEccCChhhccccceeeeEEeC
Q 013883 305 RTVTMNSLGKTFSLTGWKIGWAIAP 329 (434)
Q Consensus 305 ~~i~i~S~SK~~g~~G~R~G~~~~~ 329 (434)
-.+++.|++|.+|-.|--+|.++..
T Consensus 207 aDivv~S~tK~lgg~G~~i~G~vv~ 231 (436)
T PRK07812 207 ADIVVHSATKYLGGHGTAIAGVIVD 231 (436)
T ss_pred CCEEEEecccccCCCCCeEEEEEEc
Confidence 4477899999997565556666653
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.1e-15 Score=147.76 Aligned_cols=307 Identities=15% Similarity=0.114 Sum_probs=188.7
Q ss_pred cCCeeEeCCC--CCCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQG--FPNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g--~p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...+|+..| ...+. .+|.+.+++.+++..... +.. ....+.+..+++.+.+..... .+ .+++++++++|++
T Consensus 81 G~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~-~~~-~~~~~~~~~lae~L~~~~p~~--~~-~v~f~~SGsEAve 155 (459)
T PRK11522 81 GQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPL-HSQ-ELLDPLRAMLAKTLAALTPGK--LK-YSFFCNSGTESVE 155 (459)
T ss_pred CCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcc-ccc-ccCCHHHHHHHHHHHHhCCCC--CC-EEEEeCCchHHHH
Confidence 3456787666 22233 367788899988876422 111 122355666677666543221 23 7999999999999
Q ss_pred HHHHHcc----CCC-CeEEEcCCCchhHHHHHHHc-CCEEEE---EEcCCCC---CCCCHHHHHhhccc------CCcEE
Q 013883 185 ATILGLI----NPG-DEVILFAPFYDSYEATLSMA-GAKIKC---ITLRPPD---FAIPIEELKSTISK------NTRAI 246 (434)
Q Consensus 185 ~~~~~l~----~~g-d~Vlv~~p~y~~~~~~~~~~-G~~~~~---v~~~~~~---~~~d~~~l~~~i~~------~~~~i 246 (434)
.+++... ++| ..|+.....|++........ |-.... .|..+.- ...|.+.+++.+.. +..+|
T Consensus 156 ~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAav 235 (459)
T PRK11522 156 AALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAV 235 (459)
T ss_pred HHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEE
Confidence 9987553 123 46888888888865443332 211111 1111100 01267778877742 34556
Q ss_pred EecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccc-ceee
Q 013883 247 LMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTG-WKIG 324 (434)
Q Consensus 247 ~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-~R~G 324 (434)
++.....-.|.+ +|.+.++++.++|++||+++|+||++.+|...|..+....+.-.+| +.+++|.+| .| +.+|
T Consensus 236 IvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PD----ivt~gK~lg-gG~~Pig 310 (459)
T PRK11522 236 ILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPD----ILCLAKALG-GGVMPIG 310 (459)
T ss_pred EEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCC----EEEechhhh-CCCccce
Confidence 665556667775 4667799999999999999999999988765555444333332344 448899999 78 5899
Q ss_pred eEEeChhhHHHHHH--HhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC--CCE----eecCCe
Q 013883 325 WAIAPPHLTWGVRQ--AHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV--GFK----VFPSSG 396 (434)
Q Consensus 325 ~~~~~~~~~~~l~~--~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~----~~~~~~ 396 (434)
.+++.+++.+.+.. .....+++.++.+.+++.+.|+.-++ +.+.++.+++-+++++.|+++ .+. -+...
T Consensus 311 av~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~- 387 (459)
T PRK11522 311 ATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLE--QNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGK- 387 (459)
T ss_pred eEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEec-
Confidence 99999888776532 12335677788888888888875321 134555666666666666654 122 12333
Q ss_pred eEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 397 TYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
|.++-+.+... +....+...|++ +||.+.+.
T Consensus 388 Gl~~giel~~~--~~~~~i~~~l~~-~Gvl~~~~ 418 (459)
T PRK11522 388 GMLMAIEFVDN--EIGYNFASEMFR-QRVLVAGT 418 (459)
T ss_pred eeEEEEEecCc--hHHHHHHHHHHH-CCeEEEec
Confidence 44445554321 124567777766 59999764
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-14 Score=140.28 Aligned_cols=243 Identities=15% Similarity=0.099 Sum_probs=171.6
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCc--EEEcCChHHHHHHHHHHc--cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKE--VTVTSGCTEAIAATILGL--INPGDEVILFAPFYDSYEATLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~--i~~t~G~~~ai~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~ 223 (434)
..++.+.+.+++.+..|.+ ++ + -++|+|++|++..++... ..++++|++++-.|+.....++.+|.+.+.|+.
T Consensus 63 ~~~~e~~~~~~~a~l~g~~--~~-~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~ 139 (380)
T PRK02769 63 SFDFERDVMNFFAELFKIP--FN-ESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITS 139 (380)
T ss_pred hHHHHHHHHHHHHHHhCCC--CC-CCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceecc
Confidence 4567767777777777653 33 3 488999999987665443 357889999999999999999999999999998
Q ss_pred CCCCCCCCHHHHHhhcccC---CcEEEecCCCCCcccCCCHHHHHHHHHHHHHcC---cEEEEcCcCCccccCC-CCccc
Q 013883 224 RPPDFAIPIEELKSTISKN---TRAILMNTPHNPTGKMFTREELNVIASLCIEND---VLVFSDEVYDKLAFEM-DHISI 296 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~---~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~---~~iI~Deay~~~~~~~-~~~~~ 296 (434)
++ ++.+|++.|+++++++ +++|+++.++|+||.+.+ +++|+++|+++| +++++|.+|..+...- +....
T Consensus 140 ~~-~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~ 215 (380)
T PRK02769 140 LP-NGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPP 215 (380)
T ss_pred CC-CCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceeecccCcccc
Confidence 75 7789999999999876 888889999999999985 566888899998 7999999998854310 00001
Q ss_pred cCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhc-------cccCCchHHHHHHHHHHhC-ChHHHHH
Q 013883 297 ASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSF-------LTFATSTPMQWAATAALRA-PETYYEE 368 (434)
Q Consensus 297 ~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~-------~~~~~~~~~q~a~~~~L~~-~~~~~~~ 368 (434)
..+. .+-..+..|..|.++ .-..+|+++.+++..+.+.....+ ...+.+.....++..+|+. ..+.+++
T Consensus 216 ~d~~--~~vDsis~s~HK~~~-~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~ 292 (380)
T PRK02769 216 FSFA--DGIDSIAISGHKFIG-SPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQ 292 (380)
T ss_pred CCcc--CCCCEEEECCcccCC-CCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHH
Confidence 1111 133466788999877 334589999988766554211111 0112233344444455554 3456788
Q ss_pred HHHHHHHHHHHHHHHhhhCCCEeec-CCeeEEE
Q 013883 369 LKRDYSAKKAILVEGLNAVGFKVFP-SSGTYFV 400 (434)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~ 400 (434)
..++..+..+++.+.|++.|+++.. |.....+
T Consensus 293 ~~~~~~~la~~l~~~L~~~g~~~~~~p~~~~v~ 325 (380)
T PRK02769 293 RVQHCLDMAQYAVDRLQANGIPAWRNPNSITVV 325 (380)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEcCCCceEEE
Confidence 8888999999999999988888654 4444333
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-14 Score=145.94 Aligned_cols=305 Identities=20% Similarity=0.163 Sum_probs=182.6
Q ss_pred cCCeeEeCCCCCC--CC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFPN--FD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p~--~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...||+..|+-. +. .+|.+.+++.+++.+......+ .+.+..+++.+.+... ..+ .+++++++++|++
T Consensus 52 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~----~~~~~~la~~l~~~~p---~~~-~v~f~~sGseA~e 123 (428)
T PRK12389 52 GNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVLYGTP----TELEIEFAKMLKEAIP---SLE-KVRFVNSGTEAVM 123 (428)
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHHHhCCccCCC----CHHHHHHHHHHHHhCC---CCc-EEEEeCCHHHHHH
Confidence 3357888666322 22 3677888999988764332211 2345556666654432 134 7999999999999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHHH-cCCEEEEE--E----cC---CCC----CCCCHHHHHhhccc---CCcE
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLSM-AGAKIKCI--T----LR---PPD----FAIPIEELKSTISK---NTRA 245 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~G~~~~~v--~----~~---~~~----~~~d~~~l~~~i~~---~~~~ 245 (434)
.+++... ....+|+...-.|++....... .|...... | .. .++ ...|++.+++.+.. +..+
T Consensus 124 ~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaa 203 (428)
T PRK12389 124 TTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAA 203 (428)
T ss_pred HHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEE
Confidence 9987553 2346788888888886544332 22111100 0 00 001 01268888888853 4556
Q ss_pred EEecCCCCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceee
Q 013883 246 ILMNTPHNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIG 324 (434)
Q Consensus 246 i~~~~p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G 324 (434)
|++.......|.+. +.+.+++|.++|++||+++|+||++.+| ..+.......+.-.+| +.+++|.+| .|+.+|
T Consensus 204 vi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~PD----ivt~gK~lg-gG~Pi~ 277 (428)
T PRK12389 204 VLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVEPD----LTALGKIIG-GGLPIG 277 (428)
T ss_pred EEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCCCC----eeeechhhc-CCCcee
Confidence 66665566678755 6777999999999999999999999988 3322111111222233 458999998 899999
Q ss_pred eEEeChhhHHHHHH---HhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh----CCCEee-cCCe
Q 013883 325 WAIAPPHLTWGVRQ---AHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA----VGFKVF-PSSG 396 (434)
Q Consensus 325 ~~~~~~~~~~~l~~---~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~-~~~~ 396 (434)
.+++++++.+.+.. .....+++.+++..+++.+.|+..++ +++.++.+++-+++++.|++ .++... ...+
T Consensus 278 av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~ 355 (428)
T PRK12389 278 AYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQ--EGVYEKLDRLGAMLEEGILEAAEKHGITITINRLK 355 (428)
T ss_pred EEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Confidence 99999999887742 11234678888888888888875311 12334444455555554443 453222 1223
Q ss_pred eEEEeeecCCCCC---------C--CHHHHHHHHHHhcCeEEECC
Q 013883 397 TYFVVVDHTPFGH---------E--TDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 397 ~~~~~~~~~~~~~---------~--~~~~~~~~Ll~~~GV~v~pG 430 (434)
+++. +.+..... + ....+...+++ +||++.|.
T Consensus 356 g~~g-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~ 398 (428)
T PRK12389 356 GALT-VYFTDEKVTNYDQAERSDGEAFGKFFKLMLN-QGINLAPS 398 (428)
T ss_pred cEEE-EEEeCCCCCChhhhcccCHHHHHHHHHHHHH-CCcEeecC
Confidence 3432 22211100 0 12356666665 59999875
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-14 Score=137.05 Aligned_cols=300 Identities=19% Similarity=0.166 Sum_probs=202.0
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcC-------CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDG-------KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-------~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
..|+|=..++- ..+.+.++.-..+.+. .-.|...+-+.++.+...++.++.+|.+.. ++.-.+| +.|
T Consensus 27 ~~ieLIASEN~--~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~a---nVQPhSG-s~A 100 (413)
T COG0112 27 EHIELIASENF--TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYA---NVQPHSG-SQA 100 (413)
T ss_pred hceeeeecccc--CCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCcc---ccCCCCc-hHH
Confidence 45555333221 2455666655555431 123444444566777777777777776532 5666677 777
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHHHH---HHHcC--CEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcc
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYEAT---LSMAG--AKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTG 256 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~~~---~~~~G--~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG 256 (434)
..+++.++++|||+|+-.+-.+.+|... +...| .+++.++++.+++.+|.|++++...+ ++|+|+.-.-..|-
T Consensus 101 N~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~SaY~r- 179 (413)
T COG0112 101 NQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGGSAYSR- 179 (413)
T ss_pred HHHHHHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHHhCCCEEEECcccccc-
Confidence 7889999999999999988887776543 22233 36677777878899999999998876 78888864333332
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcCcCC-ccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeCh-hhHH
Q 013883 257 KMFTREELNVIASLCIENDVLVFSDEVYD-KLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP-HLTW 334 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~~~~iI~Deay~-~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~-~~~~ 334 (434)
.. +++++.++|.+.|.++++|.+|. ++.-+|.++.... .-.++..|-.|+| .|.|.|.+.++. ++..
T Consensus 180 -~i---d~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~-----~AdvVTtTTHKTl--rGPrGG~Il~~~eel~k 248 (413)
T COG0112 180 -PI---DFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLP-----HADVVTTTTHKTL--RGPRGGIILTNDEELAK 248 (413)
T ss_pred -cc---CHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCC-----ccceEeCCcccCC--CCCCceEEEeccHHHHH
Confidence 22 58889999999999999999985 4444554443222 2348899999997 699999999985 7777
Q ss_pred HHHHHhhccccCCchHHHHHH-HHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecC-CeeEEEeeecCCCCCCC
Q 013883 335 GVRQAHSFLTFATSTPMQWAA-TAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFPS-SGTYFVVVDHTPFGHET 411 (434)
Q Consensus 335 ~l~~~~~~~~~~~~~~~q~a~-~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~~ 411 (434)
++.+.-.....+.+.+.-.|+ +.++.. .+..+++...+..++.+.|.+.|.+.|++++.. .-+..+.+++.+.+.
T Consensus 249 kin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~-- 326 (413)
T COG0112 249 KINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGL-- 326 (413)
T ss_pred HhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEecCCccceEEEEEcccCCC--
Confidence 777655444444444432222 223332 222356677788889999999999999998753 345677888874433
Q ss_pred HHHHHHHHHHhcCeEEEC
Q 013883 412 DIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 412 ~~~~~~~Ll~~~GV~v~p 429 (434)
+-..+++++++.||.+.-
T Consensus 327 ~Gk~ae~~L~~~~It~NK 344 (413)
T COG0112 327 TGKKAEAALERAGITVNK 344 (413)
T ss_pred CHHHHHHHHHHcCEeecc
Confidence 335667777899998753
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-15 Score=139.44 Aligned_cols=288 Identities=16% Similarity=0.137 Sum_probs=182.4
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcC
Q 013883 122 DGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFA 201 (434)
Q Consensus 122 ~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~ 201 (434)
.+.|.+++++.++-..+...|+. .+..+++.+++.+..|. + .++++.++|++..+++.+.++||+.|++..
T Consensus 11 g~~~~m~eam~~a~~~~~~~YG~----D~~~~~~e~~~ae~~g~----~-a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~ 81 (342)
T COG2008 11 GPTPEMREALAAANAVGDDVYGE----DPTTNALEQRIAELFGK----E-AALFVPSGTQANQLALAAHCQPGESVICHE 81 (342)
T ss_pred CCCHHHHHHHHhccccCCCCCCC----CHHHHHHHHHHHHHhCC----c-eEEEecCccHHHHHHHHHhcCCCCeEEEec
Confidence 45677888777664333444554 44555555555544443 4 688888889999999999999999999987
Q ss_pred CCchhHHH--HHHHcCCEEEEEEcCC-CCCCCCHHHHHhhccc------CCcEEEecCCCCCcccCCCHHHHHHHHHHHH
Q 013883 202 PFYDSYEA--TLSMAGAKIKCITLRP-PDFAIPIEELKSTISK------NTRAILMNTPHNPTGKMFTREELNVIASLCI 272 (434)
Q Consensus 202 p~y~~~~~--~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~ 272 (434)
-.|-.... ..+.++ .+..++..+ +++.+++|.+++.+.+ .+..+++.+.+|..|.++|.+++++|.++|+
T Consensus 82 ~aHi~~~E~Ga~~~~~-~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k 160 (342)
T COG2008 82 TAHIYTDECGAPEFFG-GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCK 160 (342)
T ss_pred cccceecccCcHHHHc-CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHH
Confidence 76654332 234444 222334443 5789999999998864 3456666666668899999999999999999
Q ss_pred HcCcEEEEcCcCCc--cccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccc--cCCc
Q 013883 273 ENDVLVFSDEVYDK--LAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT--FATS 348 (434)
Q Consensus 273 ~~~~~iI~Deay~~--~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~--~~~~ 348 (434)
+||+.|..|.+--. +...+ ++...+.. .-.++...+||+.+.++ -..++++.+++++.+..+.... +.-.
T Consensus 161 ~~~l~LHmDGAR~~nA~valg--~~~~~~~~--~~D~v~~~~tK~g~~~~--gAiv~gn~~~~~~a~~~rK~~Ggl~~k~ 234 (342)
T COG2008 161 EHGLPLHMDGARLANALVALG--VALKTIKS--YVDSVSFCLTKGGGAPV--GAIVFGNRDFAKRARRWRKRAGGLMRKA 234 (342)
T ss_pred HhCCceeechHHHHHHHHHcC--CCHHHHHh--hCCEEEEecccCCccee--eeEEEcCHHHHHHHHHHHHHhcccHhhh
Confidence 99999999997432 11111 23333322 12245567899987665 3466678999888766554332 2334
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh-CCCEeecC-CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA-VGFKVFPS-SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 349 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
.+...+...+|++.- |+.. .+.-.++...|.+.|++ .|+++..+ +.+ .+|++++.... +...+...+ ...|+.
T Consensus 235 r~laA~~~~~l~~~~-~~~~-~~Han~mA~~La~~~~~~~G~~~~~~~~tN-~vf~~l~~~~i-~~l~~~~~~-~~~~~~ 309 (342)
T COG2008 235 RFLAAQGLYALEDDV-WRLA-ADHANAMAARLAEGLEAKPGVKLAFPVETN-MVFVRLPESAI-EALRLAGAL-FYRGVL 309 (342)
T ss_pred hHHHHHHHHHHhccH-HHHH-HHHHHHHHHHHHHhhhhcCCceeccCCccc-EEEEECChHHH-HHHHhhchh-heeeee
Confidence 444555566677632 3222 23334557888888985 59988764 666 45676643211 122222222 334666
Q ss_pred EECC
Q 013883 427 AIPT 430 (434)
Q Consensus 427 v~pG 430 (434)
+.++
T Consensus 310 ~~~~ 313 (342)
T COG2008 310 IGAH 313 (342)
T ss_pred ccCC
Confidence 6654
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-15 Score=145.29 Aligned_cols=264 Identities=19% Similarity=0.168 Sum_probs=169.2
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCC-C--cEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH-----H-----HHc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPE-K--EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT-----L-----SMA 214 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~-~--~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~-----~-----~~~ 214 (434)
+.++.+...+...+.++.+ ++ + ++-. .+++.|...++.++++|||+|+..++...+|... . ...
T Consensus 64 id~iE~la~~ra~~lF~~~--~~~w~anvqp-~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~ 140 (399)
T PF00464_consen 64 IDEIEELAIERAKELFGAE--PKEWYANVQP-HSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGL 140 (399)
T ss_dssp HHHHHHHHHHHHHHHHT-S--TTTEEEE----SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHH
T ss_pred hhHHHHHHHHHHHHHhCCC--cccceEEeec-CCchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccc
Confidence 4456666666677677754 22 1 2333 4557889999999999999999999888776421 1 224
Q ss_pred CCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCC-ccccCCC
Q 013883 215 GAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYD-KLAFEMD 292 (434)
Q Consensus 215 G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~-~~~~~~~ 292 (434)
..+.+.|+++++++.+|.|++++.+.. ++|+|++..-..|- .-+++++.++|++.|.++++|-++. ++.-+|.
T Consensus 141 ~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~~-----~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~ 215 (399)
T PF00464_consen 141 YFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICGASSYPR-----PIDFKRFREIADEVGAYLMADISHIAGLIAGGL 215 (399)
T ss_dssp HSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE-SSTSS--------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTS
T ss_pred eEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEECchhccC-----ccCHHHHHHHHHhcCcEEEecccccccceehhe
Confidence 457888999988899999999998876 89999885444442 2267889999999999999999986 4444443
Q ss_pred CccccCCCCCCCceEEEccCChhhccccceeeeEEeC--------------hhhHHHHHHHhhccccCCchHHHHH-HHH
Q 013883 293 HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP--------------PHLTWGVRQAHSFLTFATSTPMQWA-ATA 357 (434)
Q Consensus 293 ~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~--------------~~~~~~l~~~~~~~~~~~~~~~q~a-~~~ 357 (434)
.++.... -.++.+|..|+| +|.|.|.+.++ +++.+.+.........+.+.....+ .+.
T Consensus 216 ~~~P~~~-----ADvvt~sThKtl--~GPrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAv 288 (399)
T PF00464_consen 216 FPNPFPY-----ADVVTGSTHKTL--RGPRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAV 288 (399)
T ss_dssp S--GCCT-----SSEEEEESSGGG---SSS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHH
T ss_pred ecCcccc-----ceEEEeeccccc--cccCceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHH
Confidence 3333222 238899999998 69999999999 7777777766544443444443333 334
Q ss_pred HHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeec-CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 358 ALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFP-SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 358 ~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
+|.. .....++..++..++.+.|.+.|.+.|+++.. ...++.+|+++.+.+. +. ..+++.+++.||.+.
T Consensus 289 al~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~-~g-~~a~~~Le~~gI~vn 359 (399)
T PF00464_consen 289 ALKEALSPEFKEYAKQVVKNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGI-DG-KEAEKALEEAGIIVN 359 (399)
T ss_dssp HHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS--H-HHHHHHHHHTTEE-E
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHHHHhhCCcEEEECCCCCCeEEEEeccccc-ch-HHHHHHHHhcCeeec
Confidence 4443 23345677888899999999999999999974 3346678899876654 33 445666788999885
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-15 Score=142.57 Aligned_cols=200 Identities=20% Similarity=0.231 Sum_probs=153.5
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHc----CCCC-CCC--CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRD----GKNQ-YAR--GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~----~~~~-Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+.+.|..+.- -+-++.|.+++.+.+.+ .... |.. -.++.+.|+.+|++++ .++. +|++|+|+|++
T Consensus 43 ~~vyld~~at-~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklIn------Ad~~-dIiFts~ATEs 114 (428)
T KOG1549|consen 43 RPVYLDNQAT-GPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLIN------ADPS-DIVFTSGATES 114 (428)
T ss_pred ccEEEecCcC-CCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhC------CCCC-cEEEeCCchHH
Confidence 5566655532 23466777777776654 2222 222 2236678999999998 7788 69999999999
Q ss_pred HHHHHHHcc-CCCC----eEEEcCCCchhHHH---HHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCC
Q 013883 183 IAATILGLI-NPGD----EVILFAPFYDSYEA---TLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNP 254 (434)
Q Consensus 183 i~~~~~~l~-~~gd----~Vlv~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NP 254 (434)
+.++++.+. ..+| .|++.+-.|+.... .++.-|++++.+|.. .++..|++.++++|+++|+++.+-..+|.
T Consensus 115 ~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~-~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~ 193 (428)
T KOG1549|consen 115 NNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVE-DSGLVDISKLREAIRSKTRLVSIMHVNNE 193 (428)
T ss_pred HHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccC-ccccccHHHHHHhcCCCceEEEEEecccC
Confidence 999999874 4555 78887777777544 456679999999998 57889999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeCh
Q 013883 255 TGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP 330 (434)
Q Consensus 255 TG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~ 330 (434)
+|+.+| +++|+++|+++++++++|.+++-. .-...+..+. -.++..|..|.+|.+| +|++++++
T Consensus 194 ~gv~~P---v~EI~~icr~~~v~v~~DaAQavG---~i~vDV~eln----~D~~s~s~HK~ygp~~--iGaLYvr~ 257 (428)
T KOG1549|consen 194 IGVLQP---VKEIVKICREEGVQVHVDAAQAVG---KIPVDVQELN----ADFLSISAHKIYGPPG--IGALYVRR 257 (428)
T ss_pred cccccc---HHHHHHHhCcCCcEEEeehhhhcC---CccccHHHcC----chheeeecccccCCCc--ceEEEEcc
Confidence 999996 566899999999999999999752 1233334332 2367788999999888 99999986
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-14 Score=141.41 Aligned_cols=294 Identities=13% Similarity=0.098 Sum_probs=190.5
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEE--EcCChHHHHHHHHHHcc--------
Q 013883 122 DGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVT--VTSGCTEAIAATILGLI-------- 191 (434)
Q Consensus 122 ~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~--~t~G~~~ai~~~~~~l~-------- 191 (434)
++.+.+.+.+...+......+.......++.+.+.+++.+..|.+-..+ ++. +|+|++|++..++.+..
T Consensus 52 ~~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~-~~~g~~TsGgTEAn~~al~~ar~~~~~~~~ 130 (431)
T TIGR01788 52 WMEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDA-EAVGTSTIGSSEAIMLGGLAMKWRWRKRME 130 (431)
T ss_pred CCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCC-CCeEEEechHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777764322222222335778888888887777631113 344 48999999988875542
Q ss_pred CCC-----CeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 192 NPG-----DEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 192 ~~g-----d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
..| ..|++..-.|......++.+|++++.+|.++.++.+|++.|++++++++.+|++...+|.||.+.| +++
T Consensus 131 ~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idp---i~~ 207 (431)
T TIGR01788 131 AAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYED---VKA 207 (431)
T ss_pred hcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCCCceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCC---HHH
Confidence 112 368888999999999999999999999998644689999999999999999999999999999986 556
Q ss_pred HHHHHHHc------CcEEEEcCcCCccc----cCCCCccccCCCCCCCceEEEccCChhh-ccccceeeeEEeChh--hH
Q 013883 267 IASLCIEN------DVLVFSDEVYDKLA----FEMDHISIASLPGMYERTVTMNSLGKTF-SLTGWKIGWAIAPPH--LT 333 (434)
Q Consensus 267 i~~la~~~------~~~iI~Deay~~~~----~~~~~~~~~~~~~~~~~~i~i~S~SK~~-g~~G~R~G~~~~~~~--~~ 333 (434)
|+++|+++ |+++.+|.+|.++. .+.....+. ...-..+..|..|.+ +..| +|+++.+++ +.
T Consensus 208 I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~----~~~~DSis~s~HK~~~~P~g--~G~l~~r~~~~l~ 281 (431)
T TIGR01788 208 LNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR----LPRVKSINVSGHKYGLVYPG--VGWVIWRDEEALP 281 (431)
T ss_pred HHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC----CCCceEEEECchhccCCCCC--cEEEEEeChHHcc
Confidence 88889999 99999999999654 221111111 122334677889976 5444 898888654 22
Q ss_pred HHHHHHhhcc-------ccCCchHHHHHH--HHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecC--CeeEEE
Q 013883 334 WGVRQAHSFL-------TFATSTPMQWAA--TAALRA-PETYYEELKRDYSAKKAILVEGLNAV-GFKVFPS--SGTYFV 400 (434)
Q Consensus 334 ~~l~~~~~~~-------~~~~~~~~q~a~--~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~--~~~~~~ 400 (434)
+.+.....+. +...+..+..++ ...|.. ..+.+++..++..++.+++.+.|++. +++++.+ ..+...
T Consensus 282 ~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~ 361 (431)
T TIGR01788 282 EELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVA 361 (431)
T ss_pred hhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEE
Confidence 2221100011 111122221111 122222 34567778888889999999999987 5887754 455444
Q ss_pred eeecCCCC--CCCHHHHHHHHHHhcCeEE
Q 013883 401 VVDHTPFG--HETDIAFCEYLIKEVGVVA 427 (434)
Q Consensus 401 ~~~~~~~~--~~~~~~~~~~Ll~~~GV~v 427 (434)
+.+.+.+ ..+..++.++|.+ .|+.+
T Consensus 362 -Fr~~~~~~~~~~~~~l~~~L~~-~G~~~ 388 (431)
T TIGR01788 362 -FKLKDDADPGYTLYDLSHRLRE-RGWIV 388 (431)
T ss_pred -EEeCCCCCCCcCHHHHHHHHHH-CCCcc
Confidence 3443211 1245678887754 59863
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-14 Score=146.21 Aligned_cols=309 Identities=14% Similarity=0.147 Sum_probs=185.5
Q ss_pred CCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...||+..|.- .+. .+|.+.+++.+++.+..+......-..+.+..+++.+.+.... +.+ .+++++++++|++.
T Consensus 46 ~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~--~~~-~v~f~~sGSEAve~ 122 (459)
T PRK05965 46 HQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPG--SLN-HVYFTLGGSDAVDS 122 (459)
T ss_pred CEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCC--CcC-EEEEeCChhHHHHH
Confidence 35788866622 121 3678889999988764321110001124445566666654321 234 79999999999999
Q ss_pred HHHHccC-------C-CCeEEEcCCCchhHHHHH-HHcCC------------EEEEEEcCC--C-CCCCC--------HH
Q 013883 186 TILGLIN-------P-GDEVILFAPFYDSYEATL-SMAGA------------KIKCITLRP--P-DFAIP--------IE 233 (434)
Q Consensus 186 ~~~~l~~-------~-gd~Vlv~~p~y~~~~~~~-~~~G~------------~~~~v~~~~--~-~~~~d--------~~ 233 (434)
+++.... + ..+|+.....|++..... ...|. .+..++... . .+.-| ++
T Consensus 123 AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (459)
T PRK05965 123 AVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVA 202 (459)
T ss_pred HHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHH
Confidence 9876431 2 357888888888864322 11111 112222211 0 01123 25
Q ss_pred HHHhhcc----cCCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEE
Q 013883 234 ELKSTIS----KNTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVT 308 (434)
Q Consensus 234 ~l~~~i~----~~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~ 308 (434)
.+++.+. ++..+|++...+...|++ ++.+.+++|.++|++||+++|.||++.+|...|.......+.-.+|
T Consensus 203 ~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PD---- 278 (459)
T PRK05965 203 ALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPD---- 278 (459)
T ss_pred HHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCC----
Confidence 6777664 245666666556667774 5777799999999999999999999999976665554444433444
Q ss_pred EccCChhhccccc-eeeeEEeChhhHHHHHH-------HhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 013883 309 MNSLGKTFSLTGW-KIGWAIAPPHLTWGVRQ-------AHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAIL 380 (434)
Q Consensus 309 i~S~SK~~g~~G~-R~G~~~~~~~~~~~l~~-------~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l 380 (434)
+-+++|.++ .|+ .+|.+++++++.+.+.. .....+++.++.+.+++.+.|+..++ +++.++.+++-++|
T Consensus 279 iv~~gKgl~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~--~~l~~~~~~~g~~l 355 (459)
T PRK05965 279 LMTVAKGLT-SGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHE--GGLLANGQKAGPRF 355 (459)
T ss_pred eEEechhhc-cCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHH
Confidence 566899999 895 99999999999877642 12335788888888888888874321 12334445555555
Q ss_pred HHHhhhC---CCE-eecCCeeEEEeeecCCC-----CCC----CHHHHHHHHHHhcCeEEEC
Q 013883 381 VEGLNAV---GFK-VFPSSGTYFVVVDHTPF-----GHE----TDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 381 ~~~L~~~---g~~-~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~Ll~~~GV~v~p 429 (434)
.+.|+++ ++- -+...|. ++-+.+... ... ....+...+++ .||++.+
T Consensus 356 ~~~l~~l~~~~~v~~vrG~Gl-~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gll~~~ 415 (459)
T PRK05965 356 AAGLDALRAHPLVGDVRGRGL-LGALELVADKATKTPFDAALDPADRIFDRAYA-NGLVFRA 415 (459)
T ss_pred HHHHHhhccCCCEEEEeecce-EEEEEEeccccccCCCCchhHHHHHHHHHHHh-CCeEEEe
Confidence 5555543 221 1233333 444443211 000 12345556655 5999987
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-14 Score=142.59 Aligned_cols=310 Identities=15% Similarity=0.080 Sum_probs=185.1
Q ss_pred cCCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...||+..|.- .+. .+|.+.+++.+++.+..+....... .+....+++.+.+..+.. ..+ .+++++++++|++
T Consensus 53 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~-~~~~~~lAe~L~~~~p~~-~~~-~v~f~~SGsEA~e 129 (441)
T PRK05769 53 GNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFY-YEPAVELAERLVEIAPGG-FEK-KVFFTNSGTESNE 129 (441)
T ss_pred CCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccCcccC-CHHHHHHHHHHHHhCCCC-CCC-EEEECCchHHHHH
Confidence 345788876632 222 3677888999988764322221111 244566777776543211 124 7999999999999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHHHc-CC-------------EEEEEEcCCC-C--CC-C--------CHHHHH
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLSMA-GA-------------KIKCITLRPP-D--FA-I--------PIEELK 236 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~~-~--~~-~--------d~~~l~ 236 (434)
.+++... ...++|+...-.|++........ |. .+..++.... . ++ - +++.++
T Consensus 130 ~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 209 (441)
T PRK05769 130 AAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIE 209 (441)
T ss_pred HHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHH
Confidence 9987542 23467888888888866543322 21 1223333210 0 01 0 123455
Q ss_pred h-hcc-----cCCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEE
Q 013883 237 S-TIS-----KNTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTM 309 (434)
Q Consensus 237 ~-~i~-----~~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i 309 (434)
+ .++ ++..+|++.......|.. ++.+.+++|.++|++||+++|+||++.+|...|.......+.-.+| +
T Consensus 210 ~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pD----i 285 (441)
T PRK05769 210 DYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPD----I 285 (441)
T ss_pred HHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCC----E
Confidence 5 221 245556665446666774 4677799999999999999999999998766654433333322233 2
Q ss_pred ccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC--
Q 013883 310 NSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-- 387 (434)
Q Consensus 310 ~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 387 (434)
.+|+|.+| .|+++|++++++++.+.... ....+++.+++.+.++.++|+..++ ++.++.+++-++|++.|+++
T Consensus 286 vt~~K~l~-~G~p~gav~~~~~i~~~~~~-~~~~T~~g~p~~~aaa~a~L~~l~~---~~~~~~~~~g~~l~~~L~~l~~ 360 (441)
T PRK05769 286 ITLAKAIA-GGLPLGAVIGRAELMFLPPG-SHANTFGGNPVAAAAALATLEELEE---GLLENAQKLGEYLRKELKELKE 360 (441)
T ss_pred EEEccccc-CCcccEEEEEehhhhhcCCC-CCCCCCCcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999 89999999999888753321 2334677788888888888875332 45566666667777766553
Q ss_pred --CCEeecCCeeEEEeeecCCCCC----CCHHHHHHHHHHhcCeEEECC
Q 013883 388 --GFKVFPSSGTYFVVVDHTPFGH----ETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 388 --g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Ll~~~GV~v~pG 430 (434)
++......-|.++-+.+..... .....+.+.+++ .||++.|.
T Consensus 361 ~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~Gil~~~~ 408 (441)
T PRK05769 361 KYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFK-RGLLLLGA 408 (441)
T ss_pred hCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHHh-CCcEEecC
Confidence 3322222223344444322110 012345666655 59999874
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-14 Score=142.27 Aligned_cols=299 Identities=15% Similarity=0.128 Sum_probs=182.0
Q ss_pred cCCeeEeCCCCCC--CC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFPN--FD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p~--~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...|||..|+-. +. .+|.+.+++.+++.++.....+ .+...++++.+.+..+ .+ .+.++++++||..
T Consensus 74 G~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~~~~~~----~~~~~~lAe~l~~~~~----~~-~v~F~nSGtEA~e 144 (453)
T PRK07046 74 GHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGLTTMLP----SEDAAWVGEELARRFG----LP-YWQVATTATDANR 144 (453)
T ss_pred CCEEEEecccccccccCCCCHHHHHHHHHHHHhCCCCCCC----CHHHHHHHHHHHHHhC----CC-EEEEECCHHHHHH
Confidence 3467888766422 22 3678999999998875432112 2455556666665542 34 7999999999999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHHH--cCCE-----------------EEEEEcCCCCCCCCHHHHHhhccc-C
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLSM--AGAK-----------------IKCITLRPPDFAIPIEELKSTISK-N 242 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~--~G~~-----------------~~~v~~~~~~~~~d~~~l~~~i~~-~ 242 (434)
.+++... ...++|+...-.|+++.+.... .+.+ +..+| + -|++.+++.+.. +
T Consensus 145 ~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~-nd~~~l~~~l~~~~ 218 (453)
T PRK07046 145 FVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVE-----F-NDLAALEAALADGD 218 (453)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeC-----C-CCHHHHHHHhCCCC
Confidence 9887653 3347788888889887433211 1110 11111 1 278999998854 4
Q ss_pred CcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccc
Q 013883 243 TRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGW 321 (434)
Q Consensus 243 ~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~ 321 (434)
..+|++.......|.+ ++.+.+++|.++|++||+++|+||++. |..+-.. ....+.-.+| +.+++|.+| .|+
T Consensus 219 vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~Gg-~~~~~gv~PD----i~t~gK~lg-gG~ 291 (453)
T PRK07046 219 VAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGG-YTRAHGLEPD----FLVVGKPIA-GGV 291 (453)
T ss_pred eEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCcc-hhHHhCCCcc----ceeehhhhc-CCC
Confidence 5566665444445654 456679999999999999999999987 4322111 1111111233 456899999 899
Q ss_pred eeeeEEeChhhHHHHHHH---------hhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCE
Q 013883 322 KIGWAIAPPHLTWGVRQA---------HSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFK 390 (434)
Q Consensus 322 R~G~~~~~~~~~~~l~~~---------~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 390 (434)
.+|.+++++++.+.+... ....+++.++....++.+.|+.. ++.++++.+.-...++.|.+.+.+.++.
T Consensus 292 Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~ 371 (453)
T PRK07046 292 PCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARHGLP 371 (453)
T ss_pred cceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999998877532 12236778888888888887642 2344444444444455555555555544
Q ss_pred e-ecCCeeEEEeeecCCCCCC---------C---HHHHHHHHHHhcCeEEECC
Q 013883 391 V-FPSSGTYFVVVDHTPFGHE---------T---DIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 391 ~-~~~~~~~~~~~~~~~~~~~---------~---~~~~~~~Ll~~~GV~v~pG 430 (434)
+ +...|.++. +.+.+.... + ...+...+++ +||++.|.
T Consensus 372 ~~v~g~G~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~ 422 (453)
T PRK07046 372 WHVTRVGARVE-FQFAPTPPRNGAEAAAALDPELEAALHLYLLN-RGVLITPF 422 (453)
T ss_pred eEEEEeCcEEE-EEEeCCCCCCHHHHhcccCHHHHHHHHHHHHH-CCCEEecc
Confidence 3 233344432 221111000 1 1245556665 49999874
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-14 Score=144.66 Aligned_cols=308 Identities=12% Similarity=0.093 Sum_probs=182.8
Q ss_pred cCCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...|||..|. ..+. .+|.+.+++.+++.+..+ +..... .+....+++.+.+..+. .+ .+++++++++|++
T Consensus 46 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~-~~~~~~lae~l~~~~~~---~~-~v~f~~sGseA~e 119 (451)
T PRK07678 46 GNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSY-FPLTQS-HEPAIKLAEKLNEWLGG---EY-VIFFSNSGSEANE 119 (451)
T ss_pred CCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCc-cccccC-CHHHHHHHHHHHHhCCC---CC-EEEEeCCcHHHHH
Confidence 34578886662 2222 367788888888876422 111122 23445566666654432 24 7999999999999
Q ss_pred HHHHHccC-------CC-CeEEEcCCCchhHHHHHHHc-CC------------EEEEEEcCCCCCC---------CC---
Q 013883 185 ATILGLIN-------PG-DEVILFAPFYDSYEATLSMA-GA------------KIKCITLRPPDFA---------IP--- 231 (434)
Q Consensus 185 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~-G~------------~~~~v~~~~~~~~---------~d--- 231 (434)
.+++.... +| .+|+.....|++........ |. .+..+|..+ .+. .|
T Consensus 120 ~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 198 (451)
T PRK07678 120 TAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPD-CYRMPGIESEDIYDLEC 198 (451)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCc-cccccccCChHHHHHHH
Confidence 98876531 23 57888888888865443322 21 122222211 111 01
Q ss_pred HHHHHhhcc----cCCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCce
Q 013883 232 IEELKSTIS----KNTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERT 306 (434)
Q Consensus 232 ~~~l~~~i~----~~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~ 306 (434)
++.+++.+. ++..+|++...+.-.|.+ ++++.+++|.++|++||+++|+||++.+|...|.......+.-.+|
T Consensus 199 ~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PD-- 276 (451)
T PRK07678 199 VKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPD-- 276 (451)
T ss_pred HHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCC--
Confidence 223555553 345666665545556775 5677799999999999999999999999866654434433333344
Q ss_pred EEEccCChhhcccc-ceeeeEEeChhhHHHHHHH------hhccccCCchHHHHHHHHHHhCCh--HHHHHHHHHHHHHH
Q 013883 307 VTMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQA------HSFLTFATSTPMQWAATAALRAPE--TYYEELKRDYSAKK 377 (434)
Q Consensus 307 i~i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~~------~~~~~~~~~~~~q~a~~~~L~~~~--~~~~~~~~~~~~~~ 377 (434)
+-+++|.+| .| +.+|.+++++++.+.+... ....+++.++.+.+++.+.|+..+ +.++++++.-...+
T Consensus 277 --ivt~gK~lg-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~ 353 (451)
T PRK07678 277 --IITMAKGIT-SAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQLGELLL 353 (451)
T ss_pred --EEEeecccc-cCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 557899998 77 6999999999998777531 234578888998888888887532 22333333333333
Q ss_pred HHHHHHhhhCCCEe-ecCCeeEEEeeecCC-C------CCCCHHHHHHHHHHhcCeEEEC
Q 013883 378 AILVEGLNAVGFKV-FPSSGTYFVVVDHTP-F------GHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 378 ~~l~~~L~~~g~~~-~~~~~~~~~~~~~~~-~------~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
+.|.+.+++.++.. +...|.|+ -+.+.. . +......++..+++ .||++.+
T Consensus 354 ~~l~~~~~~~~~v~~vrg~Gl~~-~i~~~~~~~~~~~~~~~~a~~i~~~l~~-~Gv~~~~ 411 (451)
T PRK07678 354 EQLKEELGEHPLVGDIRGKGLLV-GIELVNDKETKEPADNDKVASVVAACKE-KGLIIGK 411 (451)
T ss_pred HHHHHHHhcCCCEEEEEeeceEE-EEEEecCCcccCcCchHHHHHHHHHHHH-CCcEEee
Confidence 44444444444432 23344433 333321 0 00112356666665 5999976
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.5e-14 Score=143.07 Aligned_cols=311 Identities=14% Similarity=0.053 Sum_probs=183.3
Q ss_pred CCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...|||..|. -.+. .+|.+.+++.+++.+..+.........+.+.++++.+.+....+ -+ .+++++++++|++.
T Consensus 48 ~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~--~~-~v~f~~SGseAve~ 124 (460)
T PRK06105 48 KRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPVP--MS-KVFFTNSGSEANDT 124 (460)
T ss_pred CEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCC--CC-EEEEeCCcHHHHHH
Confidence 3578887663 2222 36778889999887642211111112344555666666544321 24 79999999999999
Q ss_pred HHHHcc------C-C-CCeEEEcCCCchhHHHHHHH-cCC------------EEEEEEcCCC-CCC-----------CCH
Q 013883 186 TILGLI------N-P-GDEVILFAPFYDSYEATLSM-AGA------------KIKCITLRPP-DFA-----------IPI 232 (434)
Q Consensus 186 ~~~~l~------~-~-gd~Vlv~~p~y~~~~~~~~~-~G~------------~~~~v~~~~~-~~~-----------~d~ 232 (434)
+++... . + ..+|+...-.|++....... .|. .+..+|.... .+. ..+
T Consensus 125 AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 204 (460)
T PRK06105 125 VVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLA 204 (460)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHH
Confidence 988742 1 2 35788888888875433211 111 1122222110 000 013
Q ss_pred HHHHhhcc----cCCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceE
Q 013883 233 EELKSTIS----KNTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTV 307 (434)
Q Consensus 233 ~~l~~~i~----~~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i 307 (434)
+++++.+. ++..+|++...+.-.|.. ++.+.+++|.++|++||+++|+||++.+|...|.......+.-.+|
T Consensus 205 ~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PD--- 281 (460)
T PRK06105 205 NELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPD--- 281 (460)
T ss_pred HHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCC---
Confidence 55666663 245566665556666775 5777899999999999999999999998865555444433333344
Q ss_pred EEccCChhhcccc-ceeeeEEeChhhHHHHHHHh-------hccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 013883 308 TMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQAH-------SFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAI 379 (434)
Q Consensus 308 ~i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~~~-------~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~ 379 (434)
+.+++|.+| .| ..+|.+++++++.+.+.... ...+++.++++..++.+.|+..++ +++.++.+++-+.
T Consensus 282 -i~~~gK~lg-gG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~--~~l~~~v~~~g~~ 357 (460)
T PRK06105 282 -ILVMSKQLS-SSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEE--RDLVGNAAERGAR 357 (460)
T ss_pred -eeeeecccc-cCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHH
Confidence 558999998 67 58999999999887765321 234778888888888887775321 1234444444455
Q ss_pred HHHHhhh---CCCEeecCCeeEEEeeecCCCC-----CCC----HHHHHHHHHHhcCeEEECC
Q 013883 380 LVEGLNA---VGFKVFPSSGTYFVVVDHTPFG-----HET----DIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 380 l~~~L~~---~g~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~Ll~~~GV~v~pG 430 (434)
|.+.|++ .++......-|+++-+.+.+.. ... ...+...+++ +||++.|.
T Consensus 358 l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~-~Gvl~~~~ 419 (460)
T PRK06105 358 LQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHE-HGVISRAM 419 (460)
T ss_pred HHHHHHHhhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHH-CCeEEEec
Confidence 5554444 3322222233444444432111 011 2356666654 59999874
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.6e-14 Score=141.92 Aligned_cols=309 Identities=16% Similarity=0.143 Sum_probs=184.3
Q ss_pred CCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...||+..|.- .+. .+|.+.+++++++.+..+.+..... .+.+..+++.+.+.... ..+ .+++++++++|++.
T Consensus 31 ~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~-~~~~~~lae~L~~~~p~--~~~-~v~f~~sGsEAve~ 106 (447)
T PRK06917 31 NKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFT-SEPAEKLAKKLSDLSPG--DLN-WSFFVNSGSEANET 106 (447)
T ss_pred CEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccccccC-CHHHHHHHHHHHHhCCC--CCC-EEEEeCChHHHHHH
Confidence 35788876632 222 3688899999998874333222122 34556677777654421 123 79999999999999
Q ss_pred HHHHcc-------CCC-CeEEEcCCCchhHHHHHHH-cCCE------------EEEEEcCCC-C--CC--------CCHH
Q 013883 186 TILGLI-------NPG-DEVILFAPFYDSYEATLSM-AGAK------------IKCITLRPP-D--FA--------IPIE 233 (434)
Q Consensus 186 ~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~-~G~~------------~~~v~~~~~-~--~~--------~d~~ 233 (434)
+++... .+| ++|+.....|++....... .|.. +..++.... . +. -+++
T Consensus 107 AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 186 (447)
T PRK06917 107 AMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACAT 186 (447)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHH
Confidence 988652 133 6788888888886544332 2211 111221100 0 00 0245
Q ss_pred HHHhhccc----CCcEEEecCCCC-Cccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceE
Q 013883 234 ELKSTISK----NTRAILMNTPHN-PTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTV 307 (434)
Q Consensus 234 ~l~~~i~~----~~~~i~~~~p~N-PTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i 307 (434)
.+++.+.. +..+|++..... --|+ .++.+.+++|.++|++||+++|+||++.+|...|.......+.-.+|
T Consensus 187 ~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PD--- 263 (447)
T PRK06917 187 ELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPD--- 263 (447)
T ss_pred HHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCC---
Confidence 66666642 455666654343 3445 55788899999999999999999999998755554433333333344
Q ss_pred EEccCChhhccccc-eeeeEEeChhhHHHHHHHh----hccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 013883 308 TMNSLGKTFSLTGW-KIGWAIAPPHLTWGVRQAH----SFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVE 382 (434)
Q Consensus 308 ~i~S~SK~~g~~G~-R~G~~~~~~~~~~~l~~~~----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~ 382 (434)
+.+++|.+| .|+ .+|.+++++++.+.+.... ...+++.+++..+++.+.|+..++ +++.++.+++-+.|++
T Consensus 264 -i~~~gK~l~-~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~--~~l~~~~~~~g~~l~~ 339 (447)
T PRK06917 264 -IMTLGKGLG-AGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEK--HNLPEKAAEKGEYLIK 339 (447)
T ss_pred -EEEeeehhc-cCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHH
Confidence 457899998 886 8999999999887765321 224677888888888888875321 1234444445555555
Q ss_pred Hhhh----CCCEe-ecCCeeEEEeeecCCC-----CCC----CHHHHHHHHHHhcCeEEECC
Q 013883 383 GLNA----VGFKV-FPSSGTYFVVVDHTPF-----GHE----TDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 383 ~L~~----~g~~~-~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~Ll~~~GV~v~pG 430 (434)
.|++ .++.. +...|. ++.+.+.+. ... ....+...+++ +||++.|+
T Consensus 340 ~L~~l~~~~~~i~~vrG~Gl-~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~ 399 (447)
T PRK06917 340 GLQKVQQQSTIIGDVRGKGL-LIGVEFVADKKTKQPFSKSQAVASELISVAAK-NGLLLYPA 399 (447)
T ss_pred HHHHHHhcCCCEEEEeecce-EEEEEEeccCCcCCCCcchhHHHHHHHHHHHh-CCcEEEec
Confidence 5544 34322 233344 443433211 011 13356666665 59999874
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=141.55 Aligned_cols=221 Identities=19% Similarity=0.237 Sum_probs=141.8
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCC
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD 227 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~ 227 (434)
+.+.++.+|+.++ .++..+++||++.++..++.+++++||+|+++..+|.+....+.+.|+.+++++...+.
T Consensus 68 I~eAe~~aA~~fG--------Ad~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~~ 139 (417)
T PF01276_consen 68 IKEAEELAARAFG--------ADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDNE 139 (417)
T ss_dssp HHHHHHHHHHHHT--------ESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE-T
T ss_pred HHHHHHHHHHhcC--------CCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCccc
Confidence 4566666666665 34478999999999999999999999999999999999999999999999988765323
Q ss_pred C----CCCH-----HHHHhhccc--CCcE---EEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCcc-ccCCC
Q 013883 228 F----AIPI-----EELKSTISK--NTRA---ILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKL-AFEMD 292 (434)
Q Consensus 228 ~----~~d~-----~~l~~~i~~--~~~~---i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~-~~~~~ 292 (434)
+ .++. +.+++++++ ..++ +++++| +-.|++. ++++|+++|+++++.|++||||... .|..-
T Consensus 140 ~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~P-TY~Gv~~---di~~I~~~~h~~~~~llvDEAhGah~~F~~l 215 (417)
T PF01276_consen 140 YGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSP-TYYGVCY---DIKEIAEICHKHGIPLLVDEAHGAHFGFHPL 215 (417)
T ss_dssp TS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS--TTSEEE----HHHHHHHHCCTECEEEEE-TT-TTGGCSGG
T ss_pred cCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCC-CCCeEEE---CHHHHHHHhcccCCEEEEEccccccccCCCC
Confidence 2 3556 899998875 3344 888888 4579988 6788999999999999999998643 34321
Q ss_pred CccccCCC---CCCCceEEEccCChhhccccc-eeeeEEeChhh---HHHHHHHhhccccCCchHHHHH----HHHHHhC
Q 013883 293 HISIASLP---GMYERTVTMNSLGKTFSLTGW-KIGWAIAPPHL---TWGVRQAHSFLTFATSTPMQWA----ATAALRA 361 (434)
Q Consensus 293 ~~~~~~~~---~~~~~~i~i~S~SK~~g~~G~-R~G~~~~~~~~---~~~l~~~~~~~~~~~~~~~q~a----~~~~L~~ 361 (434)
..+...+. .....+++++|..|.++ ++ -.++++.+.+. .++++........+.|.....+ +...++
T Consensus 216 p~~a~~~gad~~~~~~~~vvqS~HKtL~--altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~- 292 (417)
T PF01276_consen 216 PRSALALGADRPNDPGIIVVQSTHKTLP--ALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASLDVARAQME- 292 (417)
T ss_dssp GTTCSSTTSS-CTSBEEEEEEEHHHHSS--S-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHS-
T ss_pred ccchhhccCccccccceeeeechhhccc--ccccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-
Confidence 11111111 11235699999999985 44 36788876553 3555554443333444433222 233331
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHh
Q 013883 362 PETYYEELKRDYSAKKAILVEGL 384 (434)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~L 384 (434)
.+.-+++.++..++.+.+++.+
T Consensus 293 -~~~G~~l~~~~i~~a~~~R~~i 314 (417)
T PF01276_consen 293 -EEEGRELLEEAIELAEEFRKKI 314 (417)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhhhHHHHHHHHHHHHHHHHHH
Confidence 1223344455555555566665
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-14 Score=151.58 Aligned_cols=309 Identities=12% Similarity=0.061 Sum_probs=188.7
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcC--C--CCCCCCC----CcHHHHHHHHHHHHhhcCCCCCCCC-cEEEcCChH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDG--K--NQYARGH----GVPEFNSAIASRFKKDSGLEVDPEK-EVTVTSGCT 180 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~--~--~~Y~~~~----G~~~lr~~ia~~l~~~~g~~~~~~~-~i~~t~G~~ 180 (434)
+.+-|..+.-.+.++..+.+++.+.+.+. + ..|.... -+.+.|+.++++++ .++++ +|++|+|+|
T Consensus 34 ~~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lg------a~~~~~~VvFtsnaT 107 (805)
T PLN02724 34 GVVYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFN------APPSDYACVFTSGAT 107 (805)
T ss_pred CCEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhC------CCccceEEEEeCChH
Confidence 35677666544445556666655554431 1 1111111 13456777777765 44443 589999999
Q ss_pred HHHHHHHHHc-cCCCCeEEEcCCCchhHHHH---HHHcCCEEEEEEcCC-------CCCCCCH--HHHHhhc--------
Q 013883 181 EAIAATILGL-INPGDEVILFAPFYDSYEAT---LSMAGAKIKCITLRP-------PDFAIPI--EELKSTI-------- 239 (434)
Q Consensus 181 ~ai~~~~~~l-~~~gd~Vlv~~p~y~~~~~~---~~~~G~~~~~v~~~~-------~~~~~d~--~~l~~~i-------- 239 (434)
+++.+++..+ +++||+|++..-.|.+.... ++..|++++.++.+. +...+++ +.+++.+
T Consensus 108 ~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~ 187 (805)
T PLN02724 108 AALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKRE 187 (805)
T ss_pred HHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhcccc
Confidence 9999999888 68899999976666654433 345699999988762 1223333 5566653
Q ss_pred --ccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHc-----CcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccC
Q 013883 240 --SKNTRAILMNTPHNPTGKMFTREELNVIASLCIEN-----DVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSL 312 (434)
Q Consensus 240 --~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~-----~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~ 312 (434)
.+++++|.+++.+|-||.++|.+.++++.+.++++ ++++++|.++..-. ....+..+ +-.+++.|+
T Consensus 188 ~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~---~piDv~~~----~~Dfl~~S~ 260 (805)
T PLN02724 188 DDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGT---SPPDLSRY----PADFVVVSF 260 (805)
T ss_pred ccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCC---CCCChhhc----CCCEEEEec
Confidence 13568999999999999999987655444433332 36899999986522 12222222 335888999
Q ss_pred Chhhc-cccceeeeEEeChhhHHHHHHHh------------------------hccccCCchHHHHHHHHHHhCChH-HH
Q 013883 313 GKTFS-LTGWKIGWAIAPPHLTWGVRQAH------------------------SFLTFATSTPMQWAATAALRAPET-YY 366 (434)
Q Consensus 313 SK~~g-~~G~R~G~~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~q~a~~~~L~~~~~-~~ 366 (434)
.|.+| ..| +|++++++++.+.+.... ++...+++.++..++.++|+...+ .+
T Consensus 261 HK~~GgP~G--~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~ 338 (805)
T PLN02724 261 YKIFGYPTG--LGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTI 338 (805)
T ss_pred ceeccCCCC--ceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhCh
Confidence 99987 345 899999988766554211 111223444455555555554222 24
Q ss_pred HHHHHHHHHHHHHHHHHhhhC-------CCEeecC---------CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 367 EELKRDYSAKKAILVEGLNAV-------GFKVFPS---------SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
+.+.++.++..+++.+.|.++ ++.++.+ .++.+.|.-....+..-+...+.+|++++||.++.|
T Consensus 339 ~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G 418 (805)
T PLN02724 339 SAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTG 418 (805)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeec
Confidence 566677778888888888775 2556532 234443322111111112344667778889999999
Q ss_pred CCC
Q 013883 431 SVF 433 (434)
Q Consensus 431 ~~F 433 (434)
..|
T Consensus 419 ~~C 421 (805)
T PLN02724 419 CFC 421 (805)
T ss_pred ccc
Confidence 543
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-14 Score=143.78 Aligned_cols=308 Identities=13% Similarity=0.108 Sum_probs=185.5
Q ss_pred cCCeeEeCCCC--CCC-CCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGF--PNF-DGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~--p~~-~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...+|+..|. ..+ -.+|.+.+++.+++.+..+...... ..+.+..+++.+.+..+. ..+ .+++++++++|++
T Consensus 42 G~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~-~~~~~~~la~~L~~~~p~--~~~-~v~f~~SGsEAve 117 (428)
T PRK07986 42 GRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGI-THPPAIELCRKLVAMTPQ--PLE-CVFLADSGSVAVE 117 (428)
T ss_pred CCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCcccccc-CCHHHHHHHHHHHhhCCC--CcC-EEEEeCCcHHHHH
Confidence 33578887662 112 1357888999888876432211111 234456677777655432 124 7999999999999
Q ss_pred HHHHHccC-------CCCeEEEcCCCchhHHHHHHHc-CC-------------EEEEEEcCCCCC-----CCCHHHHHhh
Q 013883 185 ATILGLIN-------PGDEVILFAPFYDSYEATLSMA-GA-------------KIKCITLRPPDF-----AIPIEELKST 238 (434)
Q Consensus 185 ~~~~~l~~-------~gd~Vlv~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~~~~-----~~d~~~l~~~ 238 (434)
.+++.... ...+|+....+|++........ +. .+..+|.....+ .-|++.+++.
T Consensus 118 ~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~ 197 (428)
T PRK07986 118 VAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARL 197 (428)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHH
Confidence 99876532 2367888888888754332221 21 112222211011 1256677777
Q ss_pred ccc---CCcEEEecCC-CCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCC
Q 013883 239 ISK---NTRAILMNTP-HNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLG 313 (434)
Q Consensus 239 i~~---~~~~i~~~~p-~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~S 313 (434)
+.. +..+|++... +.-.|. .++++.+++|.++|++||+++|+||++.+|...|.......+.-.+| +.+++
T Consensus 198 l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~PD----i~t~g 273 (428)
T PRK07986 198 MAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPD----ILCLG 273 (428)
T ss_pred HHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCCCC----EEEec
Confidence 753 3455555542 455566 44668899999999999999999999988755554433333322333 22589
Q ss_pred hhhcccc-ceeeeEEeChhhHHHHHHH-----hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC
Q 013883 314 KTFSLTG-WKIGWAIAPPHLTWGVRQA-----HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 314 K~~g~~G-~R~G~~~~~~~~~~~l~~~-----~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (434)
|.++ .| +.+|.+++++++.+.+... ....+++.++++.+++.+.|+..++ +++.++.+++-+++++.|+++
T Consensus 274 K~l~-gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~--~~~~~~~~~~g~~l~~~l~~l 350 (428)
T PRK07986 274 KALT-GGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLES--GDWQQQVAAIEAQLREELAPL 350 (428)
T ss_pred hhhh-CCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHH
Confidence 9998 78 5899999999998877542 1335777888888888887775321 123455555556666666553
Q ss_pred -CCE---eecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 388 -GFK---VFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 388 -g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
... -+... |+++-+.+... .....+...+++ .||++.|.
T Consensus 351 ~~~~~i~~vRg~-Gl~~~ve~~~~--~~~~~~~~~l~~-~Gl~~~~~ 393 (428)
T PRK07986 351 RDAPMVADVRVL-GAIGVVETTRP--VNMAALQRFFVE-QGVWIRPF 393 (428)
T ss_pred hcCCCEEeEecc-ceEEEEEeCCc--ccHHHHHHHHHH-CCcEEEec
Confidence 122 12223 33444444221 124567777765 59999873
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-14 Score=153.66 Aligned_cols=301 Identities=17% Similarity=0.149 Sum_probs=197.1
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCC---CCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH----HH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARG---HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT----EA 182 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~---~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~----~a 182 (434)
..|.||.-...+++.-....+.-..+. ..+-|.|. +|+.++...+.+++.+..|. + +|.++.+++ ++
T Consensus 526 ~~~plgsctmk~n~~~~~~~~~~~~~~-~~hp~~p~~~~~g~~~~~~~~r~~la~i~g~----~-~v~f~pnaga~ge~a 599 (993)
T PLN02414 526 SMIPLGSCTMKLNATTEMMPVTWPEFA-NIHPFAPVDQAQGYQEMFEDLGDLLCEITGF----D-SFSLQPNAGAAGEYA 599 (993)
T ss_pred CCccCcccccccCchhhhhhhcCcchh-hcCCCCCHHHHHHHHHHHHHHHHHHHHHhCC----C-eEEEcCCCcHHHHHH
Confidence 456666555555543322221111111 23556663 36655555555555555554 4 799998888 89
Q ss_pred HHHHHHHccCC-CC----eEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc---CCcEEEecCCCCC
Q 013883 183 IAATILGLINP-GD----EVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK---NTRAILMNTPHNP 254 (434)
Q Consensus 183 i~~~~~~l~~~-gd----~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~---~~~~i~~~~p~NP 254 (434)
+.++++++.++ || +|+++...|......+...|++++.+|.++ ++.+|+++|++++++ ++++|++++|+|-
T Consensus 600 ~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~~vv~v~~d~-~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~ 678 (993)
T PLN02414 600 GLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVVVGTDA-KGNINIEELRKAAEAHKDNLAALMVTYPSTH 678 (993)
T ss_pred HHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCCEEEEeccCC-CCCcCHHHHHHHHhccCCCeEEEEEECCCcc
Confidence 99999999866 88 899999999888888888999999999974 778999999999985 6789999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhc----cccceeeeEEeCh
Q 013883 255 TGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFS----LTGWKIGWAIAPP 330 (434)
Q Consensus 255 TG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g----~~G~R~G~~~~~~ 330 (434)
+|... .+++|+++|+++|+++++|.++..-..+ +. .++..+-.++..|..|.|+ ..|..+|++.+.+
T Consensus 679 gg~e~---~I~eI~~iah~~Galv~vDgAq~~a~~~-----l~-~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~ 749 (993)
T PLN02414 679 GVYEE---GIDEICDIIHDNGGQVYMDGANMNAQVG-----LT-SPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK 749 (993)
T ss_pred ccccc---hHHHHHHHHHHcCCEEEEEecCHHhccC-----cC-CccccCCCEEEecCCccCCcCcccCCCCeeeEEEch
Confidence 99875 5788999999999999999998541111 11 1222345588888999775 3455699999887
Q ss_pred hhHHHHHH---------Hhhccc--cCC-c--h----HHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhC-CCE
Q 013883 331 HLTWGVRQ---------AHSFLT--FAT-S--T----PMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAV-GFK 390 (434)
Q Consensus 331 ~~~~~l~~---------~~~~~~--~~~-~--~----~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 390 (434)
++...+-. ..+..+ .+. + . ....++..++.. +.+.+++..+....+.+++.+.|++. ++.
T Consensus 750 ~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~ 829 (993)
T PLN02414 750 HLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVL 829 (993)
T ss_pred hhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 66543321 000011 111 1 1 222333444443 45678888888899999999999762 444
Q ss_pred eecCCeeEE--EeeecCCCC---CCCHHHHHHHHHHhcCeEE
Q 013883 391 VFPSSGTYF--VVVDHTPFG---HETDIAFCEYLIKEVGVVA 427 (434)
Q Consensus 391 ~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~Ll~~~GV~v 427 (434)
+..+.+.+| +.+++.+.. ..+..+++++|+ ++||..
T Consensus 830 ~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~-d~Giha 870 (993)
T PLN02414 830 FRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLM-DYGFHA 870 (993)
T ss_pred ccCCCCCeeeeEEEeccccccccCCCHHHHHHHHH-HcCcEE
Confidence 433333322 123433221 124688999998 568864
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-14 Score=142.81 Aligned_cols=311 Identities=13% Similarity=0.092 Sum_probs=184.5
Q ss_pred cCCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...|||..|. ..+. .+|.+.+++.+++.+..+......+..+....+++.|.+.... .+.+ .+++++++++|+.
T Consensus 88 G~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~-~~~~-~v~f~~SGsEA~e 165 (504)
T PLN02760 88 GKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTA-RKMG-KVFFTNSGSEAND 165 (504)
T ss_pred CCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCC-CCCC-EEEEeCChHHHHH
Confidence 44678987762 2222 4678889999988764321111112345566667766544221 1123 6899999999999
Q ss_pred HHHHHcc-------CCC-CeEEEcCCCchhHHHH-HHHcCCE------------EEEEEcCCCCCC-------------C
Q 013883 185 ATILGLI-------NPG-DEVILFAPFYDSYEAT-LSMAGAK------------IKCITLRPPDFA-------------I 230 (434)
Q Consensus 185 ~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~-~~~~G~~------------~~~v~~~~~~~~-------------~ 230 (434)
.+++... .++ ++|+..+-.|++.... +...|.+ +..+++.. .+. .
T Consensus 166 ~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~ 244 (504)
T PLN02760 166 TQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPH-YWRFHLPGETEEEFSTR 244 (504)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCc-ccccCCCCCcHHHHHHH
Confidence 9988663 123 5788888888876432 2223321 11222110 000 0
Q ss_pred CHHHHHhhcc----cCCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCc
Q 013883 231 PIEELKSTIS----KNTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYER 305 (434)
Q Consensus 231 d~~~l~~~i~----~~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~ 305 (434)
..+.+++.+. ++..+|++.....-.|.+ ++.+.+++|.++|++||+++|+||++.+|...|.......+.-.+|
T Consensus 245 ~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PD- 323 (504)
T PLN02760 245 LADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPD- 323 (504)
T ss_pred HHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCc-
Confidence 1244666553 234566665556666775 4677799999999999999999999998865555443333322344
Q ss_pred eEEEccCChhhccccc-eeeeEEeChhhHHHHHHH-------hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 013883 306 TVTMNSLGKTFSLTGW-KIGWAIAPPHLTWGVRQA-------HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKK 377 (434)
Q Consensus 306 ~i~i~S~SK~~g~~G~-R~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~ 377 (434)
+.+|+|.+| .|. .+|.+++++++.+.+... ....+++.++.+.+++.+.|+..++ +++.++.+++-
T Consensus 324 ---ivtlgK~lg-gG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~--~~l~~~~~~~g 397 (504)
T PLN02760 324 ---LVSLAKALS-SAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKE--RNIPEHVNKIA 397 (504)
T ss_pred ---EEEeccccc-CCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHH
Confidence 678999998 674 899999999998877531 2335788888888888888875321 13344555555
Q ss_pred HHHHHHhhhC---CCE-eecCCeeEEEeeecCCCC-----CC----CHHHHHHHHHHhcCeEEECC
Q 013883 378 AILVEGLNAV---GFK-VFPSSGTYFVVVDHTPFG-----HE----TDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 378 ~~l~~~L~~~---g~~-~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~Ll~~~GV~v~pG 430 (434)
+.|++.|+++ ++. .+...|. ++-+.+.... .. ....+.+.+++ +||.+.++
T Consensus 398 ~~l~~~L~~l~~~~~v~~vrG~Gl-~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~ 461 (504)
T PLN02760 398 PRFQDGIKAFSGSPIIGEIRGTGL-ILGTEFVDNKSPNDPFPAEWGVGAYFGAECKK-RGMLVRVA 461 (504)
T ss_pred HHHHHHHHHHhcCCCeeeEEeCce-EEEEEEecCCcccccccchhHHHHHHHHHHHh-CCcEEEec
Confidence 5555555443 322 1233444 3344332110 00 02345666655 59998874
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-14 Score=142.36 Aligned_cols=312 Identities=13% Similarity=0.063 Sum_probs=181.6
Q ss_pred cCCeeEeCCCCCC--CC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCC-CCcEEE-cCChHHH
Q 013883 108 KHGAINLGQGFPN--FD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDP-EKEVTV-TSGCTEA 182 (434)
Q Consensus 108 ~~~~i~l~~g~p~--~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~~i~~-t~G~~~a 182 (434)
+...||+..|+-. +. .+|.+.+++++++.+......... ..+.+..+++.+.......... + .+++ ++++++|
T Consensus 62 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~-~~~~~~~la~~L~~~~p~~~~~~~-~v~f~~~SGSEA 139 (464)
T PRK06938 62 GRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTLDL-TTPVKDQFVQDLFASLPEAFAREA-KIQFCGPTGTDA 139 (464)
T ss_pred CCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhccccccc-CCHHHHHHHHHHHHhCcccccccc-eEEEeCCCcHHH
Confidence 3457888666322 22 367788899888864321111111 1244555666665433222211 2 4655 4788999
Q ss_pred HHHHHHHcc--CCCCeEEEcCCCchhHHHHHHH-cC------------CEEEEEEcCCCC---CC--------CCHHHHH
Q 013883 183 IAATILGLI--NPGDEVILFAPFYDSYEATLSM-AG------------AKIKCITLRPPD---FA--------IPIEELK 236 (434)
Q Consensus 183 i~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~G------------~~~~~v~~~~~~---~~--------~d~~~l~ 236 (434)
++.+++... ...++|+...-.|++....... .| ..+..+|+.... ++ .+++.++
T Consensus 140 ve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~ 219 (464)
T PRK06938 140 VEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLE 219 (464)
T ss_pred HHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHH
Confidence 999987653 2346788888888886544332 11 012334332100 00 1367777
Q ss_pred hhccc------CCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEE
Q 013883 237 STISK------NTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTM 309 (434)
Q Consensus 237 ~~i~~------~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i 309 (434)
+.+.. ++.+|++...+.-.|.+ ++.+.+++|.++|++||+++|.||++.+|...|.......+.-.+| +
T Consensus 220 ~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PD----i 295 (464)
T PRK06938 220 NLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPD----V 295 (464)
T ss_pred HHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCC----E
Confidence 77753 34566665445555765 4688899999999999999999999999866665444444433344 5
Q ss_pred ccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh---
Q 013883 310 NSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA--- 386 (434)
Q Consensus 310 ~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~--- 386 (434)
.+++|.+| .|+.+|.+++++++ +.+.......+++.++.+..++.+.|+.-++ +++.++.+++-+++.+.|++
T Consensus 296 v~~gKglg-gG~PlsAv~~~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~--~~l~~~~~~~G~~l~~~L~~l~~ 371 (464)
T PRK06938 296 VVLSKAIG-GSLPLAVVVYREWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKE--HRLAEHAAAMGERLREHLRQLQR 371 (464)
T ss_pred EEeecccc-CCCceEEEeehhHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799998 89999999998774 4443223345788888988888888875321 12334444444444444443
Q ss_pred -CCCEeecCCeeEEEeeecCCC-CC-----------CCHHHHHHHHHHhcCeEEECC
Q 013883 387 -VGFKVFPSSGTYFVVVDHTPF-GH-----------ETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 387 -~g~~~~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~Ll~~~GV~v~pG 430 (434)
.++......-|+++-+.+... .. .....+...+++ +||.+.++
T Consensus 372 ~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~ 427 (464)
T PRK06938 372 DYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLR-RGLILELG 427 (464)
T ss_pred hCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHH-CCeEEeec
Confidence 343222223334444444211 00 012345666665 59999874
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=142.46 Aligned_cols=286 Identities=15% Similarity=0.122 Sum_probs=180.8
Q ss_pred cCCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...+|+..|. ..+. .+|.+.+++.+++.+..+ +.+... .+.+..+++.+.+..+ .+ .+++++++++|++
T Consensus 23 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~-~~~~~~-~~~~~~la~~l~~~~~----~~-~v~~~~SGseA~e 95 (364)
T PRK04013 23 GRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVV-AGPMFE-HEEKEEMLEELSKWVN----YE-YVYMGNSGTEAVE 95 (364)
T ss_pred CCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCC-ccCCcC-CHHHHHHHHHHHhhcC----CC-EEEEeCchHHHHH
Confidence 33578886663 2222 356777899888876422 122122 2334555555554332 24 7999999999999
Q ss_pred HHHHHcc-CCC-CeEEEcCCCchhHHHHHHHc-CC------------EEEEEEcCCCCCCCCHHHHHhhcccCCcEEEec
Q 013883 185 ATILGLI-NPG-DEVILFAPFYDSYEATLSMA-GA------------KIKCITLRPPDFAIPIEELKSTISKNTRAILMN 249 (434)
Q Consensus 185 ~~~~~l~-~~g-d~Vlv~~p~y~~~~~~~~~~-G~------------~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~ 249 (434)
.+++... .+| ++|+....+|++........ +- .+..+|+ .|++.+++.+.+++++|++.
T Consensus 96 ~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~------~d~~~l~~~i~~~~aAvivE 169 (364)
T PRK04013 96 AALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF------NDVEAAKEAITKETAAVIFE 169 (364)
T ss_pred HHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC------CCHHHHHHHhcCCcEEEEEc
Confidence 9988663 234 88999999998865433321 11 1112221 26788999998888888887
Q ss_pred CCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEe
Q 013883 250 TPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA 328 (434)
Q Consensus 250 ~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~ 328 (434)
..+...|.. ++.+.+++|.++|++||+++|+||++.++ ..|.......+.-.+| +.+++|.+| .|+.+|.++.
T Consensus 170 pi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~PD----iv~~gK~lg-gG~P~~a~~~ 243 (364)
T PRK04013 170 PIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPD----IVTMGKGIG-NGVPVSLTLT 243 (364)
T ss_pred CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCCCCC----EEEeccccc-CCceeEEEEe
Confidence 666666664 46677999999999999999999999998 6665444443333344 556799999 7899999998
Q ss_pred ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCC
Q 013883 329 PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTP 406 (434)
Q Consensus 329 ~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 406 (434)
+.++. ......+++.++.+..++.+.|+.- ++.+++.++. +. .+...-+.-+... |.++-+.+..
T Consensus 244 ~~~~~----~~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~-------l~-~l~~~~v~~vRG~-Gl~~gve~~~ 310 (364)
T PRK04013 244 NFDVE----RGKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK-------FI-EIKGERVVTTRGR-GLMIGIVLKK 310 (364)
T ss_pred ccccc----CCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH-------HH-HhccCcceeeeeC-cEEEEEEeCC
Confidence 87752 1223457888888888888888753 2222332221 22 2222111222333 4455555532
Q ss_pred CCCCCHHHHHHHHHHhcCeEEECC
Q 013883 407 FGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 407 ~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
+...+.+.+++ +||.+.+.
T Consensus 311 ----~~~~i~~~~~~-~Gll~~~~ 329 (364)
T PRK04013 311 ----PVGKYVEELQN-RGYLVHTA 329 (364)
T ss_pred ----cHHHHHHHHHh-CCcEEeeC
Confidence 24567777765 59998763
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.2e-14 Score=140.48 Aligned_cols=244 Identities=16% Similarity=0.135 Sum_probs=157.4
Q ss_pred cCCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...||+..|.- .+. .+|.+.+++.+++....+. .+... .+.+..+++.+.+.... ..+ .+++++++++|++
T Consensus 52 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~-~~~~~-~~~~~~lae~L~~~~p~--~~~-~v~f~~SGsEAve 126 (451)
T PRK06062 52 GRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTV-APAHA-NDARSEAARLIAERAPG--DLS-KVFFTNGGADANE 126 (451)
T ss_pred CCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCc-CCccC-CHHHHHHHHHHHHhCCC--CCC-EEEEcCChHHHHH
Confidence 346788876632 122 3577888998888764322 22222 34456667776654321 124 7999999999999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHHHc-CCE-----------EEEEEcCC--C-CCC--CC-------HHHHHhh
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLSMA-GAK-----------IKCITLRP--P-DFA--IP-------IEELKST 238 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-G~~-----------~~~v~~~~--~-~~~--~d-------~~~l~~~ 238 (434)
.+++... ....+|+.....|++........ |.. +..++... . .+. -| ++.+++.
T Consensus 127 ~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~ 206 (451)
T PRK06062 127 HAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERV 206 (451)
T ss_pred HHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHH
Confidence 9987653 23467888888888865443322 211 12222111 0 010 12 5677777
Q ss_pred cc----cCCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCC
Q 013883 239 IS----KNTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLG 313 (434)
Q Consensus 239 i~----~~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~S 313 (434)
+. ++..+|++.....-.|.+ ++.+.+++|.++|++||+++|+||++.+|...|.......+.-.+| +.+|+
T Consensus 207 l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PD----i~t~g 282 (451)
T PRK06062 207 IELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPD----LITFA 282 (451)
T ss_pred HHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCC----eeeec
Confidence 74 234566665546566776 4677799999999999999999999999865554433333332344 55799
Q ss_pred hhhccccc-eeeeEEeChhhHHHHHHH--hhccccCCchHHHHHHHHHHhC
Q 013883 314 KTFSLTGW-KIGWAIAPPHLTWGVRQA--HSFLTFATSTPMQWAATAALRA 361 (434)
Q Consensus 314 K~~g~~G~-R~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~q~a~~~~L~~ 361 (434)
|.+| .|+ .+|.+++.+++.+.+... ....+|+.++.+.+++.+.|+.
T Consensus 283 K~lg-gG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~ 332 (451)
T PRK06062 283 KGVN-SGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINA 332 (451)
T ss_pred hhhh-cCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9998 785 899999999988877532 2334788888888888888875
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-14 Score=142.21 Aligned_cols=246 Identities=18% Similarity=0.168 Sum_probs=157.7
Q ss_pred CcHHHHHHHHHHHHcCC-CCCCCC---CC--cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCe
Q 013883 123 GPDFVKDAAIQAIRDGK-NQYARG---HG--VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDE 196 (434)
Q Consensus 123 ~~~~v~~~~~~~~~~~~-~~Y~~~---~G--~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~ 196 (434)
.++.+.+++.+.+.... ..|... .| +..+++.++++++ .+ ..+++++++.|+.+++.+ +.+||+
T Consensus 98 l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~G--------ae-~a~vv~sgtaAl~l~l~~-l~~Gde 167 (464)
T PRK04311 98 LSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTG--------AE-DALVVNNNAAAVLLALNA-LAAGKE 167 (464)
T ss_pred CCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhC--------CC-eEEEECCHHHHHHHHHHH-hCCCCE
Confidence 46778888888776532 222221 12 2356666766665 34 466777778999988865 589999
Q ss_pred EEEcCCCchh------HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCc--cc--CCCHHHHHH
Q 013883 197 VILFAPFYDS------YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPT--GK--MFTREELNV 266 (434)
Q Consensus 197 Vlv~~p~y~~------~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPT--G~--~~~~e~l~~ 266 (434)
|++.+..+.. ....+...|++++.++... ..++++++++++++|++|+++++.||+ |. .. ++++
T Consensus 168 VIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~---~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~---dl~e 241 (464)
T PRK04311 168 VIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTN---RTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEV---SLAE 241 (464)
T ss_pred EEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCC---CCCHHHHHHhcCccCeEEEEEcCCCccccccCCcC---CHHH
Confidence 9998764431 2345677899999887642 347899999999999999999999983 53 33 5788
Q ss_pred HHHHHHHcCcEEEEcCcCCccc----cC-CCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhh
Q 013883 267 IASLCIENDVLVFSDEVYDKLA----FE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHS 341 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~----~~-~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~ 341 (434)
|+++|++||+++|+|.+.+.+. ++ ...+.+.... ..+-.+++.|..|.+| |...|++++++++++++++..-
T Consensus 242 I~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l-~~GaDiv~fSg~K~Lg--Gp~~G~i~g~~~li~~l~~~~~ 318 (464)
T PRK04311 242 LAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELL-AAGVDLVTFSGDKLLG--GPQAGIIVGKKELIARLKKHPL 318 (464)
T ss_pred HHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHH-hcCCcEEEecCccccc--CCceEEEEEcHHHHHHHhhchh
Confidence 9999999999999999644321 11 0011111111 1244688999999986 4469999999999887764222
Q ss_pred ccccCCchHHHHHHHHHHh---CCh-HH--------HHHHHHHHHHHHHHHHHHhhhC
Q 013883 342 FLTFATSTPMQWAATAALR---APE-TY--------YEELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 342 ~~~~~~~~~~q~a~~~~L~---~~~-~~--------~~~~~~~~~~~~~~l~~~L~~~ 387 (434)
...+........+..+.|. +++ .+ +....++..++.+.+.+.|+..
T Consensus 319 ~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~ 376 (464)
T PRK04311 319 KRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAA 376 (464)
T ss_pred HHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 1223333333333333333 111 11 1122356666777788888764
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-13 Score=139.54 Aligned_cols=311 Identities=14% Similarity=0.131 Sum_probs=181.9
Q ss_pred CCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...||+..|. ..+. .+|.+.+++.+++.+..+.........+.+..+++.+.+..+. -..+ .+++++++++|++.
T Consensus 42 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~-~~~~-~v~f~~sGsEAve~ 119 (449)
T PRK07481 42 KKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAP-EGMR-RVFFSSGGSDSVET 119 (449)
T ss_pred CEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCC-CCCC-EEEEcCchHHHHHH
Confidence 3568876652 2222 3577888998888764321110001124455667766654421 1124 79999999999999
Q ss_pred HHHHccC-------CC-CeEEEcCCCchhHHHHHHHcCC-------------EEEEEEcCCC---CCC-CCHHH------
Q 013883 186 TILGLIN-------PG-DEVILFAPFYDSYEATLSMAGA-------------KIKCITLRPP---DFA-IPIEE------ 234 (434)
Q Consensus 186 ~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~---~~~-~d~~~------ 234 (434)
+++.... +| .+|+...-.|++.......... .+..++.... .+. .|.+.
T Consensus 120 AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~ 199 (449)
T PRK07481 120 ALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICA 199 (449)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHH
Confidence 9876531 23 5788888888886543222211 1222222110 011 13333
Q ss_pred --HHhhcc----cCCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceE
Q 013883 235 --LKSTIS----KNTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTV 307 (434)
Q Consensus 235 --l~~~i~----~~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i 307 (434)
+++.+. +++.+|++...+.-.|.+ ++.+.+++|.++|++||+++|.||++.+|...|.......+.-.+|
T Consensus 200 ~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PD--- 276 (449)
T PRK07481 200 RLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPD--- 276 (449)
T ss_pred HHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCC---
Confidence 334332 345667766556666774 5677799999999999999999999999866654433333333344
Q ss_pred EEccCChhhcccc-ceeeeEEeChhhHHHHHHH-------hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 013883 308 TMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQA-------HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAI 379 (434)
Q Consensus 308 ~i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~ 379 (434)
+-+++|.++ .| +.+|.+++++++.+.+... ....+++.++++..++.+.|+..++ +++.++.+++-+.
T Consensus 277 -iv~~gKgl~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~--~~l~~~~~~~g~~ 352 (449)
T PRK07481 277 -IMCLAKGIT-SGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVR--EDLPANAAKRGAY 352 (449)
T ss_pred -EEEEeeccc-CCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHH
Confidence 556799998 78 4899999999988776531 2334778888888888888875221 1233444444555
Q ss_pred HHHHhhh----CCCEe-ecCCeeEEEeeecCCCC-----CC----CHHHHHHHHHHhcCeEEECC
Q 013883 380 LVEGLNA----VGFKV-FPSSGTYFVVVDHTPFG-----HE----TDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 380 l~~~L~~----~g~~~-~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~Ll~~~GV~v~pG 430 (434)
+.+.|++ .++.. +...|. ++-+.+.... .+ ....+...+++ .||++.|.
T Consensus 353 l~~~L~~l~~~~~~i~~vrG~Gl-m~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~ 415 (449)
T PRK07481 353 LLEGLQPLKERFELVGDVRGKGL-MLALDLVADKATREPIDPSKGYANAVADVARE-NGVLVRPS 415 (449)
T ss_pred HHHHHHHHhhcCCCeEEEeecce-EEEEEecccccccCCCCchhHHHHHHHHHHHh-CCeEEEec
Confidence 5555544 33322 233444 4444442110 00 12345556655 59999874
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-13 Score=134.87 Aligned_cols=243 Identities=15% Similarity=0.057 Sum_probs=169.3
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcE--EEcCChHHHHHHHHHHcc--CCCCeEEEcCCCchhHHHHHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEV--TVTSGCTEAIAATILGLI--NPGDEVILFAPFYDSYEATLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i--~~t~G~~~ai~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~ 223 (434)
..++.+.+.+++.+..|. +++ ++ ++|+|+|+++..++.... .++..|+++.-.|......++.+|.++..||.
T Consensus 64 a~~~e~~v~~~ia~llg~--~~~-~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~ 140 (374)
T PLN03032 64 SRQFEVGVLDWFARLWEL--EKD-EYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMEAVKVPT 140 (374)
T ss_pred HHHHHHHHHHHHHHHhCC--CCc-cCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHcCCCCeEeee
Confidence 467777777777777775 344 55 899999999988876654 34568889989999999999999999999998
Q ss_pred CCCCCCCCHHHHHhhccc---CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcC-----cEEEEcCcCCcccc--CCCC
Q 013883 224 RPPDFAIPIEELKSTISK---NTRAILMNTPHNPTGKMFTREELNVIASLCIEND-----VLVFSDEVYDKLAF--EMDH 293 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~---~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~-----~~iI~Deay~~~~~--~~~~ 293 (434)
++ ++.+|++.|++++++ ++.+|+++..+|+||.+-| +++|+++|+++| +|+.+|.+|.++.. ....
T Consensus 141 d~-~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~ 216 (374)
T PLN03032 141 LP-SGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDD---LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRA 216 (374)
T ss_pred CC-CCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC---HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCC
Confidence 75 788999999999987 4667777788999999975 566888899986 59999999987532 1111
Q ss_pred ccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcc-----ccCCch--HHHHHHHHHHhC-ChHH
Q 013883 294 ISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL-----TFATST--PMQWAATAALRA-PETY 365 (434)
Q Consensus 294 ~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~-----~~~~~~--~~q~a~~~~L~~-~~~~ 365 (434)
+. ..+. ..-..+..|..|.+| .-..+|.++.+.+.++.+.....+. +...+. .....+...|.. +.+.
T Consensus 217 ~~-~~~~--~~vDSis~s~HK~~g-~P~g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g 292 (374)
T PLN03032 217 PE-VTFR--KPIGSVSVSGHKFLG-CPMPCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRG 292 (374)
T ss_pred cc-cCCC--cCCcEEEECcccccC-CCcCeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHH
Confidence 11 1111 122346678899887 3345899999877665443211111 122222 222233333433 4567
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCEee-cCCeeEEEe
Q 013883 366 YEELKRDYSAKKAILVEGLNAVGFKVF-PSSGTYFVV 401 (434)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~ 401 (434)
++++.++..++.+++.+.|++.++.+. .|.....+|
T Consensus 293 ~~~~~~~~~~~a~~l~~~l~~~~~~~~~~p~~~~V~f 329 (374)
T PLN03032 293 IKRDVQHCMRNAHYLKDRLTEAGLTCRLNELSSTVVF 329 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEECCCceEEEE
Confidence 788889999999999999999888754 455554433
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-13 Score=137.81 Aligned_cols=244 Identities=15% Similarity=0.106 Sum_probs=150.2
Q ss_pred CCeeEeCCCC----CCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 109 HGAINLGQGF----PNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 109 ~~~i~l~~g~----p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
...|||..|. -++ .+|.+.+++.+++++..+...-..+..+....+++.+.+..+.. .+ .+++++++++|+.
T Consensus 54 ~~ylD~~~g~~~~~lGh-~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~--~~-~v~f~~SGseA~e 129 (460)
T PRK12403 54 KRYLDGMSGLWCTNLGY-GRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGH--YS-HAIYTNSGSEANE 129 (460)
T ss_pred CEEEECchhHHhhcCCC-CCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCC--cC-EEEEeCCcHHHHH
Confidence 3578876652 223 46889999999987632211111122345556666666544321 24 7999999999999
Q ss_pred HHHHHcc-------CCCCe-EEEcCCCchhHHH-HHHHcCCE-----------EEEEEcCC---CCCCC--------CHH
Q 013883 185 ATILGLI-------NPGDE-VILFAPFYDSYEA-TLSMAGAK-----------IKCITLRP---PDFAI--------PIE 233 (434)
Q Consensus 185 ~~~~~l~-------~~gd~-Vlv~~p~y~~~~~-~~~~~G~~-----------~~~v~~~~---~~~~~--------d~~ 233 (434)
.+++... ++++. |+.....|++... .+...|.+ +..+|... ..+.. +++
T Consensus 130 ~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 209 (460)
T PRK12403 130 VLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAAL 209 (460)
T ss_pred HHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHH
Confidence 9988763 23333 4455567776532 22222221 22232211 00111 134
Q ss_pred HHHhhcc----cCCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEE
Q 013883 234 ELKSTIS----KNTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVT 308 (434)
Q Consensus 234 ~l~~~i~----~~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~ 308 (434)
.+++.+. ++..+|++.....-.|.+ ++.+.+++|.++|++||+++|+||++.+|...|.......+.-.+|
T Consensus 210 ~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PD---- 285 (460)
T PRK12403 210 QLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPD---- 285 (460)
T ss_pred HHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCC----
Confidence 5555542 234556665446666765 4677799999999999999999999998866665444333333333
Q ss_pred EccCChhhccccc-eeeeEEeChhhHHHHHHH----hhccccCCchHHHHHHHHHHhC
Q 013883 309 MNSLGKTFSLTGW-KIGWAIAPPHLTWGVRQA----HSFLTFATSTPMQWAATAALRA 361 (434)
Q Consensus 309 i~S~SK~~g~~G~-R~G~~~~~~~~~~~l~~~----~~~~~~~~~~~~q~a~~~~L~~ 361 (434)
+.+++|.+| .|+ .+|.+++++++.+.+... ....+++.++.+.+++.+.|+.
T Consensus 286 iv~~gK~lg-gG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~ 342 (460)
T PRK12403 286 TLSIAKGLT-SGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKA 342 (460)
T ss_pred eEEEccccc-ccccceEEEEECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHH
Confidence 335899998 785 899999998888776421 1234677888888888888875
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-13 Score=138.28 Aligned_cols=309 Identities=15% Similarity=0.112 Sum_probs=180.0
Q ss_pred cCCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...|||..|. ..+. .+|.+.+++.+++.+..+. .......+....+++.+.+..+. ..+ .+++++++++|++
T Consensus 52 G~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~-~~~~~~~~~~~~lae~L~~~~p~--~~~-~v~f~~SGsEA~e 127 (457)
T PRK05639 52 GNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHS-MIGYTHSERAIRVAEKLAEISPI--ENP-KVLFGLSGSDAVD 127 (457)
T ss_pred CCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhcccc-ccCccCCHHHHHHHHHHHhhCCC--CcC-EEEEeCchHHHHH
Confidence 34678887763 2222 3677888898888763211 11111123444566666544321 124 7999999999999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHHH-cCC-------------EEEEEEcCCCC---CC----CCH--------H
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLSM-AGA-------------KIKCITLRPPD---FA----IPI--------E 233 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~G~-------------~~~~v~~~~~~---~~----~d~--------~ 233 (434)
.+++... ....+|+.....|++....... .|. .+..+|+.... +. .|. +
T Consensus 128 ~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (457)
T PRK05639 128 MAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLD 207 (457)
T ss_pred HHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHH
Confidence 9987653 3345788888888885543222 221 13344433100 00 022 2
Q ss_pred HHHhhc------ccCCcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCce
Q 013883 234 ELKSTI------SKNTRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERT 306 (434)
Q Consensus 234 ~l~~~i------~~~~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~ 306 (434)
.+++.+ ..+..+|++...+...|. .++.+.+++|.++|++||+++|+||++.+|...|.......+.-.+|
T Consensus 208 ~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PD-- 285 (457)
T PRK05639 208 YLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPD-- 285 (457)
T ss_pred HHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCC--
Confidence 344443 235666777655666677 45677799999999999999999999998765554333333322334
Q ss_pred EEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh
Q 013883 307 VTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA 386 (434)
Q Consensus 307 i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~ 386 (434)
+-+|+|.+| .|+.+|.+++++++.+.. .-....+++.++....++.+.|+.-++ ++..++.+++-++|++.|++
T Consensus 286 --iv~~gK~l~-gG~pi~av~~~~~i~~~~-~~~~~~T~~g~p~~~aaa~a~l~~l~~--~~l~~~~~~~g~~l~~~L~~ 359 (457)
T PRK05639 286 --LIIFGKGVA-SGMGLSGVIGRKELMDLT-SGSALLTPAANPVISAAAEATLEIIEE--ENLLKNALKVGEFIKKRLLE 359 (457)
T ss_pred --EEEechhhc-CCCcceeEEehHHHHhhc-CCCcccCCCcCHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHH
Confidence 333899998 889999999999988722 111234667777777777777765211 12334444444555555544
Q ss_pred ----CCCEe-ecCCeeEEEeeecCC-CCCC---CHHHHHHHHHHhcCeEEECC
Q 013883 387 ----VGFKV-FPSSGTYFVVVDHTP-FGHE---TDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 387 ----~g~~~-~~~~~~~~~~~~~~~-~~~~---~~~~~~~~Ll~~~GV~v~pG 430 (434)
.++.. +...|. ++-+.+.. .... ....+...+++ +||++.+.
T Consensus 360 l~~~~~~~~~VrG~Gl-~~gve~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~ 410 (457)
T PRK05639 360 MKESFEVIGDVRGKGL-MIGVEIVKENGKPDPELTGKICWRAFE-LGLILPSY 410 (457)
T ss_pred HHHhCCCEEeecccee-EEEEEEecCCCCCCHHHHHHHHHHHHh-CCeEEeec
Confidence 34332 233444 44444321 1111 12356666665 59999773
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-13 Score=139.18 Aligned_cols=309 Identities=15% Similarity=0.109 Sum_probs=181.1
Q ss_pred cCCeeEeCCC-CCCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 108 KHGAINLGQG-FPNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 108 ~~~~i~l~~g-~p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
+...|||..+ ...+. .+|.+.+++.+++....+ ....-..+.+..+++.+.+..+. ..+ .+++++++++|++.
T Consensus 71 G~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~--~~~~~~~~~~~~lae~L~~~~p~--~~~-~v~f~~sGseAve~ 145 (459)
T PRK06082 71 GKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPF--SPRRFTNETAIECAEKLTEIAGG--ELN-RVLFAPGGTSAIGM 145 (459)
T ss_pred CCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCC--ccCccCCHHHHHHHHHHHHhCCC--CCC-EEEECCCcHHHHHH
Confidence 3457887622 22233 577888999998876322 11111235566677777655432 124 79999999999999
Q ss_pred HHHHcc--CCCCeEEEcCCCchhHHH-HHHHcCCE------------EEEEEcCCC-C--CC-C------CHHHHHhhcc
Q 013883 186 TILGLI--NPGDEVILFAPFYDSYEA-TLSMAGAK------------IKCITLRPP-D--FA-I------PIEELKSTIS 240 (434)
Q Consensus 186 ~~~~l~--~~gd~Vlv~~p~y~~~~~-~~~~~G~~------------~~~v~~~~~-~--~~-~------d~~~l~~~i~ 240 (434)
+++... ....+|+.....|++... .+...|.. +..+|.... . +. . +++.+++.+.
T Consensus 146 AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 225 (459)
T PRK06082 146 ALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIE 225 (459)
T ss_pred HHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHh
Confidence 887553 234678888888877543 23222221 122222110 0 10 0 1345777665
Q ss_pred c--CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcc
Q 013883 241 K--NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSL 318 (434)
Q Consensus 241 ~--~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 318 (434)
. +..+|++....+..+..++.+.+++|.++|++||+++|+||++.+|...|.......+.-.+| +.+++|.+|
T Consensus 226 ~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PD----iv~~gKgl~- 300 (459)
T PRK06082 226 KEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPD----ILCIGKGLG- 300 (459)
T ss_pred cCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCC----EEEeccccc-
Confidence 3 455666654455545567888899999999999999999999999866655433333332344 334899999
Q ss_pred cc-ceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh----CCCE-ee
Q 013883 319 TG-WKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA----VGFK-VF 392 (434)
Q Consensus 319 ~G-~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~-~~ 392 (434)
.| ..+|.+++++++...........+++.++++.+++.+.|+..++ +++.++.+++-++|++.|++ .++. -+
T Consensus 301 gG~~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v 378 (459)
T PRK06082 301 GGLVPIAAMITKDKYNTAAQISLGHYTHEKSPLGCAAALATIEVIEQ--EGLLEKVKADSQFMRERLLEMKAKYPLIGDV 378 (459)
T ss_pred CCCCcceEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHhhCCCeeee
Confidence 77 48999999888654332111124778888888888888775321 12444555555555555544 3332 22
Q ss_pred cCCeeEEEeeecCCC-C-CC----CHHHHHHHHHHhcCeEEECC
Q 013883 393 PSSGTYFVVVDHTPF-G-HE----TDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 393 ~~~~~~~~~~~~~~~-~-~~----~~~~~~~~Ll~~~GV~v~pG 430 (434)
...|. ++-+.+... . .. ....+...+++ .||++.|.
T Consensus 379 rG~Gl-~~~ve~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~ 420 (459)
T PRK06082 379 RGIGL-LWGVELVTDRHTKERAYDEAEAVLYRCLN-NGLSFKVS 420 (459)
T ss_pred eeccc-eeEEEEccCccccCccHHHHHHHHHHHHh-CCCEEEec
Confidence 34444 434444211 0 00 12345566655 59998773
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-14 Score=128.70 Aligned_cols=291 Identities=18% Similarity=0.160 Sum_probs=194.6
Q ss_pred CeeEeCCC-CCCCCCcHHHHHHHHHHHHcCCCCCC---CCCCc----HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 110 GAINLGQG-FPNFDGPDFVKDAAIQAIRDGKNQYA---RGHGV----PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 110 ~~i~l~~g-~p~~~~~~~v~~~~~~~~~~~~~~Y~---~~~G~----~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
+.+||+.+ |.++..+|++.++-++++++...+-. -+-|. ..|...||++.+ .| +.++...+..
T Consensus 68 ~ilnFcaNnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~--------rE-D~ilypscfd 138 (417)
T KOG1359|consen 68 KILNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHG--------RE-DTILYPSCFD 138 (417)
T ss_pred ceeeecccccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHhC--------CC-ceEEeccccc
Confidence 67899876 88999999999999999887211111 11233 456666666655 34 5677777799
Q ss_pred HHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc----cCCcEEEecCCCCCccc
Q 013883 182 AIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS----KNTRAILMNTPHNPTGK 257 (434)
Q Consensus 182 ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~----~~~~~i~~~~p~NPTG~ 257 (434)
|...++.+++.|.|.|+-....+....+.+.++. + -..+|+-.++..+. .+-|+|+.-..-...|.
T Consensus 139 ANag~feail~pedAvfSDeLNhASIIdGirLck-r---------y~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGd 208 (417)
T KOG1359|consen 139 ANAGAFEAILTPEDAVFSDELNHASIIDGIRLCK-R---------YRHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGD 208 (417)
T ss_pred cchHHHHHhcChhhhhhccccccchhhhhhHHHh-h---------hccchhHHHHHHHHHhhhheEEEEEecceeccCCC
Confidence 9999999999999999998888888887777665 1 12345555655443 35566665566788898
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCC-CCCCCceEEEccCChhhccccceeeeEEeChhhHHHH
Q 013883 258 MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGV 336 (434)
Q Consensus 258 ~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~-~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l 336 (434)
+.|.+ +|.+++++||.++++||++..+.++......... ..+.+..+..++++|.+| |--.||..+++.+++-+
T Consensus 209 iaPl~---ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlG--ga~GGyttgp~~li~ll 283 (417)
T KOG1359|consen 209 IAPLE---EISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALG--GASGGYTTGPKPLISLL 283 (417)
T ss_pred cccHH---HHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhc--CCCCCCccCChhHHHHH
Confidence 88755 5888899999999999999998887655444333 223456688889999997 44459999999999988
Q ss_pred HHHhhccccCCchH-H-HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHH
Q 013883 337 RQAHSFLTFATSTP-M-QWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIA 414 (434)
Q Consensus 337 ~~~~~~~~~~~~~~-~-q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (434)
+...+..-|+.+.+ + --.++.++.-.- .-.+...+.+.+.+.+++.++..|+.+......... +-+ .+...+..
T Consensus 284 rqr~RpylFSnslppavV~~a~ka~dllm-~s~~~i~~~~a~~qrfr~~me~aGftIsg~~hPI~p-v~l--Gda~lA~~ 359 (417)
T KOG1359|consen 284 RQRSRPYLFSNSLPPAVVGMAAKAYDLLM-VSSKEIQSRQANTQRFREFMEAAGFTISGASHPICP-VML--GDARLASK 359 (417)
T ss_pred HhcCCceeecCCCChhhhhhhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhcCceecCCCCCccc-eec--ccHHHHHH
Confidence 87776554443332 1 111222222100 012334555667778888888889988654433221 111 11123557
Q ss_pred HHHHHHHhcCeEEEC
Q 013883 415 FCEYLIKEVGVVAIP 429 (434)
Q Consensus 415 ~~~~Ll~~~GV~v~p 429 (434)
+++.|+++ ||+|..
T Consensus 360 ~ad~lLk~-Gi~Vig 373 (417)
T KOG1359|consen 360 MADELLKR-GIYVIG 373 (417)
T ss_pred HHHHHHhc-CceEEe
Confidence 88888876 999874
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-13 Score=139.18 Aligned_cols=310 Identities=13% Similarity=0.091 Sum_probs=187.2
Q ss_pred cCCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...||+..|. -.+. .+|.+.+++.+++.+..+....... .+.+..+++.+.+..+.. -+ .+++++++++|++
T Consensus 53 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~-~~~~~~lAe~L~~~~p~~--~~-~v~f~~sGseAve 128 (453)
T PRK06943 53 GRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCT-HEPAIELAERLAALTGGT--LG-HAFFASDGASAVE 128 (453)
T ss_pred CCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccccccC-CHHHHHHHHHHHHhCCCC--CC-EEEEeCCCHHHHH
Confidence 34578886662 2222 3677888898888764221111111 244556777776544322 23 7999999999999
Q ss_pred HHHHHcc-------CC-CCeEEEcCCCchhHHHHHHH-cCC------------EEEEEEcCCCC---CC--------CCH
Q 013883 185 ATILGLI-------NP-GDEVILFAPFYDSYEATLSM-AGA------------KIKCITLRPPD---FA--------IPI 232 (434)
Q Consensus 185 ~~~~~l~-------~~-gd~Vlv~~p~y~~~~~~~~~-~G~------------~~~~v~~~~~~---~~--------~d~ 232 (434)
.+++... .+ ..+|+.....|++....... .|- .+..+|..... .. -++
T Consensus 129 ~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 208 (453)
T PRK06943 129 IALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARAL 208 (453)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHH
Confidence 9988652 12 36788888888885432221 111 12223322100 00 124
Q ss_pred HHHHhhcc---cCCcEEEecC-CCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceE
Q 013883 233 EELKSTIS---KNTRAILMNT-PHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTV 307 (434)
Q Consensus 233 ~~l~~~i~---~~~~~i~~~~-p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i 307 (434)
+.+++.+. ++..+|++.. .+...|. .++.+.+++|.++|++||+++|+||++.+|...|.......+.-.+|
T Consensus 209 ~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PD--- 285 (453)
T PRK06943 209 ADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPD--- 285 (453)
T ss_pred HHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCC---
Confidence 66777774 3556666654 2666777 45777899999999999999999999999866665544444433344
Q ss_pred EEccCChhhcccc-ceeeeEEeChhhHHHHHHH------hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 013883 308 TMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQA------HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAIL 380 (434)
Q Consensus 308 ~i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~~------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l 380 (434)
+-+++|.++ .| ..+|.+++++++.+.+... ....+++.++.+.+++.+.|+..++ +++.++.+++-+++
T Consensus 286 -ivt~gKgl~-gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~--~~l~~~~~~~G~~l 361 (453)
T PRK06943 286 -FLCLSKGIS-GGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAE--DDVLARNARKSARL 361 (453)
T ss_pred -eEeeehhhc-cCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHH
Confidence 556799999 89 4999999999998776421 1334777888888888888875321 12334444444455
Q ss_pred HHHhhhC----CCEeecCCeeEEEeeecCC-CCCC--CHHHHHHHHHHhcCeEEECC
Q 013883 381 VEGLNAV----GFKVFPSSGTYFVVVDHTP-FGHE--TDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 381 ~~~L~~~----g~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~Ll~~~GV~v~pG 430 (434)
.+.|+++ ++.-+...|. ++-+.+.. .... ....+..++++ +||++.|.
T Consensus 362 ~~~L~~l~~~~~v~~vrG~Gl-~~gvel~~~~~~~~~~~~~i~~~~~~-~Gll~~~~ 416 (453)
T PRK06943 362 RAALAPLAAHPQVRHLRQRGT-IFAFDVALDGDAARTFSRRFFEAALE-RELLLRPI 416 (453)
T ss_pred HHHHHHHhcCCCEEeEecccc-EEEEEEccCCCcchHHHHHHHHHHHH-CCcEEEec
Confidence 5555443 2332334444 44444431 1100 12356666665 59999873
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-14 Score=141.64 Aligned_cols=155 Identities=25% Similarity=0.345 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHH----HHHHHcCCEEEEEEcC
Q 013883 149 PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYE----ATLSMAGAKIKCITLR 224 (434)
Q Consensus 149 ~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~G~~~~~v~~~ 224 (434)
.+|++.++++++ . .. .+++++| +.|+.+++.+++++||+|+++...|.+.. ..+...|++++.++ +
T Consensus 72 ~~le~~la~l~g----~---~~-~v~fsSG-~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~ 141 (437)
T PRK05613 72 EALENRIASLEG----G---VH-AVAFASG-QAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE-N 141 (437)
T ss_pred HHHHHHHHHHhC----C---Ce-EEEeCCH-HHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-C
Confidence 456666666654 2 22 5666666 58888888888999999999999999864 44577899999887 2
Q ss_pred CCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCC
Q 013883 225 PPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYE 304 (434)
Q Consensus 225 ~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~ 304 (434)
+ . |++.+++++++++++|++.++.||+|.+.+ +++|+++|+++|+++|+|.++..... ...+ . .+
T Consensus 142 ~-~---d~e~l~~~l~~~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~---~~p~-~----~G 206 (437)
T PRK05613 142 P-D---DPESWQAAVQPNTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAAL---VRPL-E----LG 206 (437)
T ss_pred C-C---CHHHHHHhCCccCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCccccc---cChH-H----hC
Confidence 2 1 789999999999999999999999998884 77789999999999999999864221 1111 1 13
Q ss_pred ceEEEccCChhhccccceee-eEEe
Q 013883 305 RTVTMNSLGKTFSLTGWKIG-WAIA 328 (434)
Q Consensus 305 ~~i~i~S~SK~~g~~G~R~G-~~~~ 328 (434)
-.+++.|++|.++-.|--+| .++.
T Consensus 207 aDivv~S~~K~l~G~gd~~gG~vv~ 231 (437)
T PRK05613 207 ADVVVASLTKFYTGNGSGLGGVLID 231 (437)
T ss_pred CCEEEeeccceecCCCcceeEEEEe
Confidence 35889999999874444444 4443
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-13 Score=137.68 Aligned_cols=309 Identities=17% Similarity=0.114 Sum_probs=181.4
Q ss_pred CCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...|||..|.- .+. .+|.+.+++.+++.+..+....... .+....+++.+...... ..+ .+++++++++|++.
T Consensus 30 ~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~-~~~~~~lae~L~~~~p~--~~~-~v~f~~sGsEAve~ 105 (443)
T PRK07483 30 KRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFT-TEPAEALADRLVAAAPA--GLE-HVYFVSGGSEAVEA 105 (443)
T ss_pred CEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCccccccC-CHHHHHHHHHHHHhCCC--CCC-EEEEcCCcHHHHHH
Confidence 35788876622 222 3677889999988764211111111 34455677777654321 124 79999999999999
Q ss_pred HHHHccC-------CC-CeEEEcCCCchhHHHHHHHc-CC------------EEEEEEcCC--CCC--CC--------CH
Q 013883 186 TILGLIN-------PG-DEVILFAPFYDSYEATLSMA-GA------------KIKCITLRP--PDF--AI--------PI 232 (434)
Q Consensus 186 ~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~-G~------------~~~~v~~~~--~~~--~~--------d~ 232 (434)
+++.... +| .+|+.....|++........ |- .+..++... .+. .. .+
T Consensus 106 AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (443)
T PRK07483 106 ALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLA 185 (443)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHH
Confidence 9875431 33 56888888888864332221 11 112222110 000 00 02
Q ss_pred HHHHhhcc----cCCcEEEecCCCC-Cccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCce
Q 013883 233 EELKSTIS----KNTRAILMNTPHN-PTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERT 306 (434)
Q Consensus 233 ~~l~~~i~----~~~~~i~~~~p~N-PTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~ 306 (434)
+.+++++. ++..+|++...+. -.|. .++++.+++|.++|++||+++|+||++.+|...|.......+.-.+|
T Consensus 186 ~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PD-- 263 (443)
T PRK07483 186 DELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPD-- 263 (443)
T ss_pred HHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCC--
Confidence 55666553 2455666654343 2354 55777899999999999999999999999876665444444433344
Q ss_pred EEEccCChhhccccc-eeeeEEeChhhHHHHHHH----hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 013883 307 VTMNSLGKTFSLTGW-KIGWAIAPPHLTWGVRQA----HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILV 381 (434)
Q Consensus 307 i~i~S~SK~~g~~G~-R~G~~~~~~~~~~~l~~~----~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~ 381 (434)
+-+++|.++ .|+ .+|.+++++++.+.+... ....+++.++.+..++.+.|+..++ +++.++.+++-++|+
T Consensus 264 --iv~~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~--~~l~~~~~~~g~~l~ 338 (443)
T PRK07483 264 --LVTIAKGLG-AGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAE--DGLLANVRARGEQLR 338 (443)
T ss_pred --eeeehhhhc-cCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHH
Confidence 566899998 886 999999999988776532 1235788888888888888875321 123344444444444
Q ss_pred HHhh----hCCCE-eecCCeeEEEeeecCCC-----CCC----CHHHHHHHHHHhcCeEEECC
Q 013883 382 EGLN----AVGFK-VFPSSGTYFVVVDHTPF-----GHE----TDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 382 ~~L~----~~g~~-~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~Ll~~~GV~v~pG 430 (434)
+.|+ +.++. -+...|.| +-+.+... ..+ ....+.+.+++ .||++.|.
T Consensus 339 ~~L~~l~~~~~~i~~vRG~Glm-~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~ 399 (443)
T PRK07483 339 ARLRERLGQHPHVGDIRGRGLF-VGVELVADRATKAPFDPALKLHARIKREAMA-RGLMVYPM 399 (443)
T ss_pred HHHHHHHhcCCCeeeEeecccE-EEEEEeecccccCCCCchhhHHHHHHHHHHH-CCcEEEec
Confidence 4444 33322 22334443 33333211 000 12356666665 59999763
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-13 Score=138.82 Aligned_cols=312 Identities=15% Similarity=0.123 Sum_probs=182.7
Q ss_pred cCCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...||+..|.- .+. .+|.+.+++.+++....+.........+.+..+++.+...... ..+ .+++++++++|++
T Consensus 50 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~--~~~-~v~f~~sGseAve 126 (466)
T PRK07036 50 GRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAPG--DLN-HVFLTTGGSTAVD 126 (466)
T ss_pred CCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccccccccCCHHHHHHHHHHHHhCCC--CcC-EEEEeCCchHHHH
Confidence 335788866632 122 3677888898888763221111101134556677777654322 124 7999999999999
Q ss_pred HHHHHcc------C-C-CCeEEEcCCCchhHHHHHHHc-CC------------EEEEEEcCCC---CCCCC--------H
Q 013883 185 ATILGLI------N-P-GDEVILFAPFYDSYEATLSMA-GA------------KIKCITLRPP---DFAIP--------I 232 (434)
Q Consensus 185 ~~~~~l~------~-~-gd~Vlv~~p~y~~~~~~~~~~-G~------------~~~~v~~~~~---~~~~d--------~ 232 (434)
.+++... . + ..+|+.....|++....+... |- .+..++.... ..+.+ +
T Consensus 127 ~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 206 (466)
T PRK07036 127 SALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLV 206 (466)
T ss_pred HHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHH
Confidence 9887642 1 2 257888888888865433222 11 1222322110 01111 2
Q ss_pred HHHHhhcc----cCCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCcccc-CCCCCCCce
Q 013883 233 EELKSTIS----KNTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIA-SLPGMYERT 306 (434)
Q Consensus 233 ~~l~~~i~----~~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~-~~~~~~~~~ 306 (434)
+.+++.+. ++..+|++...+...|.+ ++.+.+++|.++|++||+++|+||++.+|...|...... .+.-.+|
T Consensus 207 ~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PD-- 284 (466)
T PRK07036 207 DEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPD-- 284 (466)
T ss_pred HHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCC--
Confidence 34444442 245666666556666774 567779999999999999999999999986555433333 2222344
Q ss_pred EEEccCChhhccccc-eeeeEEeChhhHHHHHHH-------hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 013883 307 VTMNSLGKTFSLTGW-KIGWAIAPPHLTWGVRQA-------HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKA 378 (434)
Q Consensus 307 i~i~S~SK~~g~~G~-R~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~ 378 (434)
+.+++|.+| .|+ .+|.+++++++.+.+... ....+++.++++..++.+.|+..++ +++.++.+++-+
T Consensus 285 --ivt~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~--~~l~~~~~~~g~ 359 (466)
T PRK07036 285 --IITFAKGLT-SGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMER--EGLCEHVREVGP 359 (466)
T ss_pred --EEEEccccc-cCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHH
Confidence 557899998 784 899999999998876531 1223778888888888888875321 123444445555
Q ss_pred HHHHHhhh---CCCEeecCCeeEEEeeecCCCCC-----C----CHHHHHHHHHHhcCeEEECC
Q 013883 379 ILVEGLNA---VGFKVFPSSGTYFVVVDHTPFGH-----E----TDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 379 ~l~~~L~~---~g~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~Ll~~~GV~v~pG 430 (434)
+|++.|++ .++......-|.++.+.+..... . ....+...+++ .||++.|.
T Consensus 360 ~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~ 422 (466)
T PRK07036 360 YFEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQE-RGLLVRPL 422 (466)
T ss_pred HHHHHHHHhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHH-CCcEEeec
Confidence 55555543 33322222333444454422110 0 12346666655 59999873
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-13 Score=138.86 Aligned_cols=308 Identities=12% Similarity=0.113 Sum_probs=183.7
Q ss_pred cCCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...+|+..|. ..+. .+|.+.+++.+++.+..+...... ..+.+..+++.+...... ..+ .+++++++++|++
T Consensus 43 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~-~~~~~~~lae~L~~~~p~--~~~-~v~f~~sGseAve 118 (429)
T PRK06173 43 GRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGF-THEPAVELAQKLLEILPP--SLN-KIFFADSGSVAVE 118 (429)
T ss_pred CCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCcccccc-CCHHHHHHHHHHHhhCCC--CcC-EEEEeCCchHHHH
Confidence 34578886652 1121 357788888888876322111001 123445566666544321 224 7999999999999
Q ss_pred HHHHHccC-------CC-CeEEEcCCCchhHHHH-HHHcCC-------------EEEEEEcCCCCCC-----CCHHHHHh
Q 013883 185 ATILGLIN-------PG-DEVILFAPFYDSYEAT-LSMAGA-------------KIKCITLRPPDFA-----IPIEELKS 237 (434)
Q Consensus 185 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~-~~~~G~-------------~~~~v~~~~~~~~-----~d~~~l~~ 237 (434)
.+++.... +| .+|+.....|++.... +...|. .+..+|.....+. -+++.+++
T Consensus 119 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~ 198 (429)
T PRK06173 119 VAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQD 198 (429)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHH
Confidence 98876531 33 5688888888884222 111110 1122222210111 13666777
Q ss_pred hcc---cCCcEEEecCC-CCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccC
Q 013883 238 TIS---KNTRAILMNTP-HNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSL 312 (434)
Q Consensus 238 ~i~---~~~~~i~~~~p-~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~ 312 (434)
.+. ++..+|++... +.-.|.. ++++.+++|.++|++||+++|+||++.+|...|.......+.-.+| +.+|
T Consensus 199 ~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PD----iv~~ 274 (429)
T PRK06173 199 LLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPD----IMCI 274 (429)
T ss_pred HHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCCCC----EEEe
Confidence 774 34566666542 6667775 6778899999999999999999999988755554433333322333 3349
Q ss_pred Chhhccccc-eeeeEEeChhhHHHHHH-----HhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh
Q 013883 313 GKTFSLTGW-KIGWAIAPPHLTWGVRQ-----AHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA 386 (434)
Q Consensus 313 SK~~g~~G~-R~G~~~~~~~~~~~l~~-----~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~ 386 (434)
+|.++ .|+ .++.+++++++.+.+.. .....+++.+++...++.++|+..++ +..+++.+++-+.|++.|++
T Consensus 275 gK~l~-gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~--~~~~~~~~~~g~~l~~~L~~ 351 (429)
T PRK06173 275 GKALT-GGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLE--SPWQQNIQRIEAQLKQELAP 351 (429)
T ss_pred ehhhh-CCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH
Confidence 99998 784 78999999998877642 11223567778888888877764221 12355666666677777765
Q ss_pred C-CCEee---cCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 387 V-GFKVF---PSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 387 ~-g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
+ ++..+ ... |+++-+.+... .....+++.|+++ ||++.+.
T Consensus 352 ~~~~~~v~~vRg~-Gl~~~iel~~~--~~~~~i~~~l~e~-Gi~v~~~ 395 (429)
T PRK06173 352 AAEFDSVAEVRVL-GAIGVVEMKEP--VNMATLQPRFVEH-GIWVRPF 395 (429)
T ss_pred hhcCCCeeeeecc-ceEEEEEeCCc--ccHHHHHHHHHHC-CeEEEec
Confidence 4 33322 223 43444444221 1345677777655 9999874
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-13 Score=139.13 Aligned_cols=310 Identities=14% Similarity=0.140 Sum_probs=186.0
Q ss_pred cCCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...|||..|. -.+. .+|.+.+++.+++.+..+....... .+....+++.+.+..... .+ .+++++++++|++
T Consensus 48 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~-~~~~~~la~~L~~~~p~~--~~-~v~f~~sGseAve 123 (445)
T PRK09221 48 GRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQMG-HPLAFELAERLAELAPGG--LD-HVFFTNSGSESVD 123 (445)
T ss_pred CCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccccccC-CHHHHHHHHHHHHhCCCC--CC-EEEEeCCcHHHHH
Confidence 34678887662 2222 4677888898888763221111112 234455666666543221 24 7999999999999
Q ss_pred HHHHHccC-------C-CCeEEEcCCCchhHHHHHHHc-C------------CEEEEEEcCC--CC--CCC--------C
Q 013883 185 ATILGLIN-------P-GDEVILFAPFYDSYEATLSMA-G------------AKIKCITLRP--PD--FAI--------P 231 (434)
Q Consensus 185 ~~~~~l~~-------~-gd~Vlv~~p~y~~~~~~~~~~-G------------~~~~~v~~~~--~~--~~~--------d 231 (434)
.+++.... + ..+|+.....|++........ | ..+..+|... .. +.. .
T Consensus 124 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (445)
T PRK09221 124 TALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAEL 203 (445)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHH
Confidence 98875431 1 257888888888754332211 1 1122233211 00 110 1
Q ss_pred HHHHHhhcc----cCCcEEEecCCCCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCce
Q 013883 232 IEELKSTIS----KNTRAILMNTPHNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERT 306 (434)
Q Consensus 232 ~~~l~~~i~----~~~~~i~~~~p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~ 306 (434)
++.+++.+. ++..+|++.......|... +.+.+++|.++|++||+++|+||++.+|...|.......+.-.+|
T Consensus 204 ~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PD-- 281 (445)
T PRK09221 204 ADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPD-- 281 (445)
T ss_pred HHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCC--
Confidence 356666664 2455666665576778754 566799999999999999999999998765555443333332344
Q ss_pred EEEccCChhhcccc-ceeeeEEeChhhHHHHHHH-------hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 013883 307 VTMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQA-------HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKA 378 (434)
Q Consensus 307 i~i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~ 378 (434)
+.+++|.++ .| ..+|.+++++++.+.+... ....+++.+++...++.+.|+..++ +.+.++.+++.+
T Consensus 282 --i~~~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~--~~l~~~~~~~g~ 356 (445)
T PRK09221 282 --IITFAKGLT-NGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYRE--EDLFERAAELAP 356 (445)
T ss_pred --EEEeccccc-cCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHH
Confidence 558999998 66 6799999999988766421 1234777788888788777765321 134566677777
Q ss_pred HHHHHhhhC-CCEe---ecCCeeEEEeeecCCCCC---CCHHHHHHHHHHhcCeEEECC
Q 013883 379 ILVEGLNAV-GFKV---FPSSGTYFVVVDHTPFGH---ETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 379 ~l~~~L~~~-g~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~Ll~~~GV~v~pG 430 (434)
++++.|+++ +... +...| .+.-+.+.+... ....++.++++++ ||.+.++
T Consensus 357 ~l~~~l~~l~~~~~v~~vrg~G-l~~~v~~~~~~~~~~~~~~~~~~~~~~~-Gv~~~~~ 413 (445)
T PRK09221 357 YFEDAVHSLKGLPHVIDIRNIG-LVAGIELAPRPGAPGARGYEAFMKCFEK-GLLVRYT 413 (445)
T ss_pred HHHHHHHhhccCCCEEEEecCc-eEEEEEEecccccccchHHHHHHHHHHC-CeEEeec
Confidence 777777664 2221 22233 334444432111 1134677777654 9998764
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-13 Score=137.43 Aligned_cols=310 Identities=14% Similarity=0.102 Sum_probs=184.1
Q ss_pred cCCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...+||..|. -.+. .+|.+.+++.+++++..+....... .+.+..+++.+.+.... ..+ .+++++++++|++
T Consensus 45 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~-~~~~~~la~~l~~~~p~--~~~-~v~f~~sGseA~e 120 (442)
T PRK13360 45 GRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMG-HPKAFELANRIAEIAPG--GLN-HVFFTNSGSESVD 120 (442)
T ss_pred CCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCCcC-CHHHHHHHHHHHHhCCC--CCC-EEEEeCCcHHHHH
Confidence 33578886662 2222 3677888998888763221111111 24455666666654321 124 7999999999999
Q ss_pred HHHHHccC-------C-CCeEEEcCCCchhHHHHHH-HcC------------CEEEEEEcCCC--C--CCC--------C
Q 013883 185 ATILGLIN-------P-GDEVILFAPFYDSYEATLS-MAG------------AKIKCITLRPP--D--FAI--------P 231 (434)
Q Consensus 185 ~~~~~l~~-------~-gd~Vlv~~p~y~~~~~~~~-~~G------------~~~~~v~~~~~--~--~~~--------d 231 (434)
.+++.... + ..+|+.....|++...... ..| ..+..+|.... . +.. .
T Consensus 121 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 200 (442)
T PRK13360 121 TALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAEL 200 (442)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHH
Confidence 99875431 2 3578888888888543221 111 11223333210 0 111 1
Q ss_pred HHHHHhhcc----cCCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCce
Q 013883 232 IEELKSTIS----KNTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERT 306 (434)
Q Consensus 232 ~~~l~~~i~----~~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~ 306 (434)
++.+++.+. ++..+|++.......|.. ++.+.+++|.++|++||+++|+||++.+|...|.......+.-.+|
T Consensus 201 ~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PD-- 278 (442)
T PRK13360 201 ADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPD-- 278 (442)
T ss_pred HHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCc--
Confidence 456777764 234556665556667775 4677799999999999999999999988765554433333322334
Q ss_pred EEEccCChhhcccc-ceeeeEEeChhhHHHHHHH-------hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 013883 307 VTMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQA-------HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKA 378 (434)
Q Consensus 307 i~i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~ 378 (434)
+.+|+|.++ .| +.+|.+++++++.+.+... ....+++.+++...++.++|+..++ +.+.++.+++-+
T Consensus 279 --ivt~gK~l~-gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~--~~l~~~~~~~g~ 353 (442)
T PRK13360 279 --LLTCAKGLT-NGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYER--EGLLTRAARLAP 353 (442)
T ss_pred --eeeeeeccc-cCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHH
Confidence 458899998 67 6899999999988766431 1234777888888888888775321 134555666666
Q ss_pred HHHHHhhhCC-CEe---ecCCeeEEEeeecCCCC---CCCHHHHHHHHHHhcCeEEECC
Q 013883 379 ILVEGLNAVG-FKV---FPSSGTYFVVVDHTPFG---HETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 379 ~l~~~L~~~g-~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
++++.|++++ ... +...|. ++-+.+.+.. .....++..++++ +||++.++
T Consensus 354 ~l~~~l~~l~~~~~v~~vrG~Gl-~~~~~l~~~~~~~~~~~~~~~~~l~~-~Gvl~~~~ 410 (442)
T PRK13360 354 YWEDALHSLRDAPHVIDIRNLGL-VGAVELAPRDGKPGKRAYEVFLKCFE-KGLMIRYT 410 (442)
T ss_pred HHHHHHHHhhcCCCeeeeeccce-EEEEEEecCCCCcchhHHHHHHHHHH-CCcEEEec
Confidence 6666666542 211 222233 3333332211 1123467777765 49998764
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-15 Score=144.65 Aligned_cols=252 Identities=19% Similarity=0.180 Sum_probs=165.0
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCC
Q 013883 123 GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAP 202 (434)
Q Consensus 123 ~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p 202 (434)
+.+.+.+++.++. .+...|.......+|++.++++++ .+ ..+++.+++.+...+++.+++|++.|++.++
T Consensus 7 ~~~~m~~a~~~a~-~gd~~Yg~D~~~~~l~~~i~~l~g--------~e-~a~f~~sGT~An~~al~~~~~~~~~vi~~~~ 76 (290)
T PF01212_consen 7 PTPAMLEAMAAAN-VGDDAYGEDPTTARLEERIAELFG--------KE-AALFVPSGTMANQLALRAHLRPGESVICADT 76 (290)
T ss_dssp S-HHEEHHHHHTT-SB-CCTTSSHHHHHHHHHHHHHHT--------SS-EEEEESSHHHHHHHHHHHHHHTTEEEEEETT
T ss_pred CCHHHHHHHHccc-cCCcccCCChhHHHHHHHHHHHcC--------CC-EEEEeCCCChHHHHHHHHHHhcCCceecccc
Confidence 6677777774443 333468777667788888888877 44 5678888999999999999999999999999
Q ss_pred CchhHH---HHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc------CCcEEEecCCCCCc-ccCCCHHHHHHHHHHHH
Q 013883 203 FYDSYE---ATLSMAGAKIKCITLRPPDFAIPIEELKSTISK------NTRAILMNTPHNPT-GKMFTREELNVIASLCI 272 (434)
Q Consensus 203 ~y~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~i~~~~p~NPT-G~~~~~e~l~~i~~la~ 272 (434)
.|.... ......|++++.++..+ ++.+|+++|++.+.. ++++|.+++|+|-. |.+++.+++++|.++|+
T Consensus 77 aHi~~~E~ga~~~~~G~~~~~l~~~~-~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~ 155 (290)
T PF01212_consen 77 AHIHFDETGAIEELSGAKLIPLPSDD-DGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAR 155 (290)
T ss_dssp EHHHHSSTTHHHHHTTCEEEEEBECT-GTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHH
T ss_pred ceeeeeccchhhHhcCcEEEECCCcc-cCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHH
Confidence 766432 22356899999998773 388999999999865 46889999998864 88999999999999999
Q ss_pred HcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCC---ch
Q 013883 273 ENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT---ST 349 (434)
Q Consensus 273 ~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~---~~ 349 (434)
+||+.++.|.+--.-........+..+.. .-.++..|++|++|+++ -+.++++++++++....+....... ..
T Consensus 156 ~~gl~lhmDGARl~~a~~~~~~~~~e~~~--~~D~v~~~~tK~~g~~~--Gavl~~~~~~i~~~~~~~k~~gg~~~~~G~ 231 (290)
T PF01212_consen 156 EHGLPLHMDGARLANAAAALGVSLAEIAA--GADSVSFGGTKNGGAPG--GAVLAGNKEFIAKARRQRKRLGGGMRQAGV 231 (290)
T ss_dssp HHT-EEEEEETTHHHHHCHHHHHHHHHHT--TSSEEEEETTSTT-SSS--EEEEEESHHHHHHHHHHHHHHTHHHHHTTH
T ss_pred hCceEEEEehhhHHHhhhcccccHHHHhh--hCCEEEEEEEccccccc--ceEEEechHHHHHHHHHHHHhccCeeecce
Confidence 99999999998432111000111222211 12256679999998766 5788889997765443333221111 11
Q ss_pred HHH-----HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeec
Q 013883 350 PMQ-----WAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFP 393 (434)
Q Consensus 350 ~~q-----~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 393 (434)
+.. .++...++. +++ ...+..++.+.+.+.|+.+|..+..
T Consensus 232 ~~a~~~~~~~~l~~l~~---~~~-~~~~~~~~A~~La~~l~~~~~~~~~ 276 (290)
T PF01212_consen 232 LAAAELYQFAALRALEL---WLE-RARHANAMAKRLAAGLEALGGVLPR 276 (290)
T ss_dssp HHHHHHHHHHHHCHEEC---SHH-HHHCHHHHHHCHHHCHHEECEEEET
T ss_pred eeeechhhHHHHHHHHh---hHH-HHHHHHHHHHHHHHHHHHCCCcccC
Confidence 111 122222332 323 3455566778888888888766543
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-13 Score=139.09 Aligned_cols=246 Identities=16% Similarity=0.120 Sum_probs=154.2
Q ss_pred cCCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...||+..|. ..+. .+|.+.+++++++.+..+.........+.+..+++.+.+..+. ..+ .+++++++++|++
T Consensus 49 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~--~~~-~v~f~~SGseA~e 125 (456)
T PRK07480 49 GNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPP--GFN-HVFFTNSGSEAND 125 (456)
T ss_pred CCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCC--CcC-EEEEeCCcHHHHH
Confidence 33578886662 2222 3677888998888764221111011235566677777654432 124 7999999999999
Q ss_pred HHHHHccC-------CC-CeEEEcCCCchhHHHHHHH-cCCE------------EEEEEcCC--C-CCCCC--------H
Q 013883 185 ATILGLIN-------PG-DEVILFAPFYDSYEATLSM-AGAK------------IKCITLRP--P-DFAIP--------I 232 (434)
Q Consensus 185 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~-~G~~------------~~~v~~~~--~-~~~~d--------~ 232 (434)
.+++.... +| .+|+...-.|++....... .|.. +..++... . ....+ +
T Consensus 126 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 205 (456)
T PRK07480 126 TVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAA 205 (456)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHH
Confidence 99875531 33 4688888888875422211 1111 11122110 0 00011 2
Q ss_pred HHHHhhcc----cCCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceE
Q 013883 233 EELKSTIS----KNTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTV 307 (434)
Q Consensus 233 ~~l~~~i~----~~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i 307 (434)
+.+++.+. ++..+|++...+.-.|.+ ++.+.+++|.++|++||+++|+||++.+|...|.......+.-.+|
T Consensus 206 ~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PD--- 282 (456)
T PRK07480 206 RQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPD--- 282 (456)
T ss_pred HHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCC---
Confidence 55554442 245667776556666774 5666799999999999999999999999865655444444433344
Q ss_pred EEccCChhhccccc-eeeeEEeChhhHHHHHH----HhhccccCCchHHHHHHHHHHhC
Q 013883 308 TMNSLGKTFSLTGW-KIGWAIAPPHLTWGVRQ----AHSFLTFATSTPMQWAATAALRA 361 (434)
Q Consensus 308 ~i~S~SK~~g~~G~-R~G~~~~~~~~~~~l~~----~~~~~~~~~~~~~q~a~~~~L~~ 361 (434)
+.+|+|.++ .|+ .+|.+++++++.+.+.. .....+++.++++.+++.+.|+.
T Consensus 283 -iv~~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~ 339 (456)
T PRK07480 283 -LMTIAKGLT-SGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRI 339 (456)
T ss_pred -eeeeehhhc-cCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHH
Confidence 567899998 785 89999999998877631 12335788899998888888875
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.1e-13 Score=136.15 Aligned_cols=308 Identities=10% Similarity=0.093 Sum_probs=185.7
Q ss_pred CCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...+||..|.- .+. .+|.+.+++.+++.+..+...... ..+.+..+++.+...... ..+ .+++++++++|++.
T Consensus 47 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~-~~~~~~~lae~L~~~~p~--~~~-~v~f~~sGsEAve~ 122 (466)
T PRK07030 47 KRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGF-SHEPVIELSERLVKITPP--GLS-RCFYADNGSSAIEV 122 (466)
T ss_pred CEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCcccccc-CCHHHHHHHHHHHHhCCC--CcC-EEEEeCCcHHHHHH
Confidence 35788866632 122 357788889888876422221111 134556667777654321 224 79999999999999
Q ss_pred HHHHccC-------C-CCeEEEcCCCchhHHHHHHHc-CC------------EEEEEEcCCC---CCCC--------CHH
Q 013883 186 TILGLIN-------P-GDEVILFAPFYDSYEATLSMA-GA------------KIKCITLRPP---DFAI--------PIE 233 (434)
Q Consensus 186 ~~~~l~~-------~-gd~Vlv~~p~y~~~~~~~~~~-G~------------~~~~v~~~~~---~~~~--------d~~ 233 (434)
+++.... + ..+|+.....|++........ |. .+..+|.... ..+. +++
T Consensus 123 AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~ 202 (466)
T PRK07030 123 ALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFA 202 (466)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHH
Confidence 9876521 2 356888888888865433322 21 1222332210 0111 245
Q ss_pred HHHhhcc---cCCcEEEecC-CCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEE
Q 013883 234 ELKSTIS---KNTRAILMNT-PHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVT 308 (434)
Q Consensus 234 ~l~~~i~---~~~~~i~~~~-p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~ 308 (434)
.+++.+. ++..+|++.. .+.-.|. .++++.+++|.++|++||+++|+||++.+|...|.......+.-.+|
T Consensus 203 ~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PD---- 278 (466)
T PRK07030 203 HMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPD---- 278 (466)
T ss_pred HHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCC----
Confidence 6677664 2455666654 2555677 55677799999999999999999999999876665444444433344
Q ss_pred EccCChhhccccc-eeeeEEeChhhHHHHHH-------HhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 013883 309 MNSLGKTFSLTGW-KIGWAIAPPHLTWGVRQ-------AHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAIL 380 (434)
Q Consensus 309 i~S~SK~~g~~G~-R~G~~~~~~~~~~~l~~-------~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l 380 (434)
+-+++|.++ .|+ .+|.+++++++.+.+.. .....+++.++.+.+++.+.|+..++ +++.++.+++-+++
T Consensus 279 iv~~gKgl~-gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~--~~l~~~~~~~G~~l 355 (466)
T PRK07030 279 FLCLSKALT-GGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQ--DNVIENNRALARRM 355 (466)
T ss_pred EEeeehhcc-CCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHH
Confidence 556799999 895 99999999999877642 12335778888888888888875321 12344445555555
Q ss_pred HHHhhhC---CC-EeecCCeeEEEeeecCCCCC-----C-C---HHHHHHHHHHhcCeEEEC
Q 013883 381 VEGLNAV---GF-KVFPSSGTYFVVVDHTPFGH-----E-T---DIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 381 ~~~L~~~---g~-~~~~~~~~~~~~~~~~~~~~-----~-~---~~~~~~~Ll~~~GV~v~p 429 (434)
.+.|+++ .. .-+...|. ++-+.+..... . + ...+..++++ +||.+.|
T Consensus 356 ~~~L~~l~~~~~v~~vrG~Gl-~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~ 415 (466)
T PRK07030 356 AEATAHLADHPHVAEVRQTGM-ILAIEMVQDKASKTPYPWQERRGLKVYQHALE-RGALLRP 415 (466)
T ss_pred HHHHHHHhcCCCEEEeEecee-EEEEEeccCccccccCcchhHHHHHHHHHHHH-CCeEEEe
Confidence 5555443 22 12233444 44444421110 0 0 1356666665 5999987
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-13 Score=134.31 Aligned_cols=306 Identities=15% Similarity=0.137 Sum_probs=182.1
Q ss_pred CCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...|||..|.- .+. .+|.+.+++.+++++..+....... .+....+++.+.+..+.. .+ .+++++++++|++.
T Consensus 40 ~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~-~~~~~~lae~L~~~~p~~--~~-~v~f~~SGseA~e~ 115 (422)
T PRK05630 40 STVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLT-HEPAIKLTRKLLNLTDNG--LD-HVFYSDSGSVSVEV 115 (422)
T ss_pred CEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCcC-CHHHHHHHHHHHhhCCCC--cC-EEEEeCCcHHHHHH
Confidence 35788866622 222 3678888998888764321111111 233455666665443221 24 79999999999999
Q ss_pred HHHHccC-------CC-CeEEEcCCCchhHHHHHHHc-CC-------------EEEEEEcCCCCCCCC-------HHHHH
Q 013883 186 TILGLIN-------PG-DEVILFAPFYDSYEATLSMA-GA-------------KIKCITLRPPDFAIP-------IEELK 236 (434)
Q Consensus 186 ~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~~~~~~d-------~~~l~ 236 (434)
+++.... ++ .+|+.....|++........ +. .+..+|... ....+ ++.++
T Consensus 116 AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~ 194 (422)
T PRK05630 116 AIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPP-VRGSSPQEISEYLRSLE 194 (422)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCc-ccCCChHHHHHHHHHHH
Confidence 8876431 23 57888888888854333221 21 112233221 01111 24455
Q ss_pred hhcccCCcEEEecCC-CCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCCh
Q 013883 237 STISKNTRAILMNTP-HNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGK 314 (434)
Q Consensus 237 ~~i~~~~~~i~~~~p-~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK 314 (434)
+.+.++..+|++... +.-.|.. ++.+.+++|.++|++||+++|+||++.++...|.......+.-.+| +.+++|
T Consensus 195 ~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PD----i~t~gK 270 (422)
T PRK05630 195 LLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPD----IMCVGK 270 (422)
T ss_pred HHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCC----eeeeec
Confidence 555556777777652 6667774 5677799999999999999999999988865554433333322334 348899
Q ss_pred hhcccc-ceeeeEEeChhhHHHHHHH------hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC
Q 013883 315 TFSLTG-WKIGWAIAPPHLTWGVRQA------HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 315 ~~g~~G-~R~G~~~~~~~~~~~l~~~------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (434)
.++ .| ..+|++++++++.+.+... ....+++.++....++.++|+..++ +...++.+++-+++.+.|+++
T Consensus 271 ~l~-gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~--~~~~~~~~~~g~~l~~~L~~l 347 (422)
T PRK05630 271 ALT-GGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIET--GMWRKQVKRIEAELIAGLSPL 347 (422)
T ss_pred hhh-cCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHh
Confidence 997 67 4899999999998876431 1235778888888888887775321 122334444455555555432
Q ss_pred ----CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 388 ----GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 388 ----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
.+.-+...|. ++-+.+... .+...+.+.+++ +||++.+.
T Consensus 348 ~~~~~v~~vRg~Gl-~~~ie~~~~--~~~~~~~~~~~~-~Gl~~~~~ 390 (422)
T PRK05630 348 AHLPGVADVRVLGA-IGVVEMEQP--VDMEEATQAAVD-HGVWLRPF 390 (422)
T ss_pred hcCCCeeeeecccc-EEEEEECCc--ccHHHHHHHHHH-CCeEEEec
Confidence 1222233343 444444221 124567777765 49998763
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-13 Score=136.89 Aligned_cols=247 Identities=11% Similarity=0.075 Sum_probs=157.7
Q ss_pred cCCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCC---CCCCCcEEEcCChHH
Q 013883 108 KHGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLE---VDPEKEVTVTSGCTE 181 (434)
Q Consensus 108 ~~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~---~~~~~~i~~t~G~~~ 181 (434)
+...||+..|.- .+. .+|.+.+++.+++++..+....... .+.+..+++.+.+..... -+.+ .+++++++++
T Consensus 63 G~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~~~-~~~~~~lae~L~~~~p~~~~~~~~~-~v~f~~sGSE 140 (472)
T PRK08742 63 GRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFT-HEPAVQLAEQLLAIAPRQDGRAPLS-KVFYADNGSA 140 (472)
T ss_pred CCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccccccC-CHHHHHHHHHHHHhCCCcccCCCCC-EEEEeCCchH
Confidence 346788876621 122 3677888888887653221111111 244566777766544211 1124 7999999999
Q ss_pred HHHHHHHHccC-------C-CCeEEEcCCCchhHHHHHHHcCC-------------EEEEEEcCCC---CCCC-------
Q 013883 182 AIAATILGLIN-------P-GDEVILFAPFYDSYEATLSMAGA-------------KIKCITLRPP---DFAI------- 230 (434)
Q Consensus 182 ai~~~~~~l~~-------~-gd~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~---~~~~------- 230 (434)
|++.+++.... + ..+|+.....|++........+. .+..+|.... ..+.
T Consensus 141 AvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (472)
T PRK08742 141 GVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYAL 220 (472)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHH
Confidence 99999876531 2 36788888888886544333221 1222332210 0111
Q ss_pred -CHHHHHhhcc---cCCcEEEecC-CCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCC
Q 013883 231 -PIEELKSTIS---KNTRAILMNT-PHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYE 304 (434)
Q Consensus 231 -d~~~l~~~i~---~~~~~i~~~~-p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~ 304 (434)
+++.+++.+. .+..+|++.. .++-.|. .++++.+++|.++|++||+++|+||++.+|...|.......+.-.+|
T Consensus 221 ~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PD 300 (472)
T PRK08742 221 QAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPD 300 (472)
T ss_pred HHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCC
Confidence 2566666664 2455666654 2666677 55777899999999999999999999999877665554444433344
Q ss_pred ceEEEccCChhhccccc-eeeeEEeChhhHHHHHHH------hhccccCCchHHHHHHHHHHhC
Q 013883 305 RTVTMNSLGKTFSLTGW-KIGWAIAPPHLTWGVRQA------HSFLTFATSTPMQWAATAALRA 361 (434)
Q Consensus 305 ~~i~i~S~SK~~g~~G~-R~G~~~~~~~~~~~l~~~------~~~~~~~~~~~~q~a~~~~L~~ 361 (434)
+-+++|.+| .|+ .+|.+++++++.+.+... ....+++.++.+.+++.+.|+.
T Consensus 301 ----iv~~gKgl~-gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~ 359 (472)
T PRK08742 301 ----LLCLSKGLT-GGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDI 359 (472)
T ss_pred ----EEEEccccc-CCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHH
Confidence 556799998 885 899999999988766421 1234777888888888888775
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.1e-13 Score=121.09 Aligned_cols=289 Identities=15% Similarity=0.179 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCC-c
Q 013883 126 FVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPF-Y 204 (434)
Q Consensus 126 ~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~-y 204 (434)
.+-+.+.+++......|..+. ...+.+.+-+-++..+... .....++...+..+++.++..++.|||.|++..-. |
T Consensus 27 nl~~~V~~A~~~~~lgh~sPe-~~qIm~~v~egikyVFkT~--n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~w 103 (385)
T KOG2862|consen 27 NLSGRVQEAMSRPSLGHMSPE-FVQIMDEVLEGIKYVFKTA--NAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTW 103 (385)
T ss_pred CCCHHHHHhhcCCccccCCHH-HHHHHHHHHHHHHHHhccC--CCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechH
Confidence 344456666666555555532 2334444443333333221 22245666667899999999999999999987654 4
Q ss_pred hh-HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcC
Q 013883 205 DS-YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDE 282 (434)
Q Consensus 205 ~~-~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~De 282 (434)
.. ..+..+.+|++|..|+.+. +....++.+.+.+.+ +++++++++-...||+..+ -++.+.++|++|+.++++|.
T Consensus 104 g~ra~D~~~r~ga~V~~v~~~~-G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~--~~~~~g~lc~k~~~lllVD~ 180 (385)
T KOG2862|consen 104 GQRAADCARRYGAEVDVVEADI-GQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQD--LLAISGELCHKHEALLLVDT 180 (385)
T ss_pred HHHHHHHHHhhCceeeEEecCc-ccCccHHHHHHHHHhcCCceEEEEecCccccccch--HHHHHHHHhhcCCeEEEEec
Confidence 43 4678899999999998775 677899999999987 6899999999999999864 35667889999999999999
Q ss_pred cCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhh---------------------
Q 013883 283 VYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHS--------------------- 341 (434)
Q Consensus 283 ay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~--------------------- 341 (434)
+-+-. +... .++++.- .+....--|.+|.| ..++.+..++...++++..+.
T Consensus 181 VaSlg---gt~F---~mDewgV-DvaytgSQKaL~aP-~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e 252 (385)
T KOG2862|consen 181 VASLG---GTEF---EMDEWGV-DVAYTGSQKALGAP-AGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGE 252 (385)
T ss_pred hhhcC---Cccc---eehhhcc-cEEEecchhhcCCC-CCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCc
Confidence 87642 2221 1222222 23333334888753 236677777777777654433
Q ss_pred --ccccCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCC---eeEEE-eeecCCCCCCCHHH
Q 013883 342 --FLTFATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFPSS---GTYFV-VVDHTPFGHETDIA 414 (434)
Q Consensus 342 --~~~~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~-~~~~~~~~~~~~~~ 414 (434)
....+++....+...++|.. .++.+++..++.+++.+.++..|+++|++..... -.+-+ -+. .|++. |..+
T Consensus 253 ~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~-vp~gv-Dw~d 330 (385)
T KOG2862|consen 253 PRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVK-VPYGV-DWKD 330 (385)
T ss_pred ccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeee-cCCCC-CHHH
Confidence 11244566666666677765 3677999999999999999999999987653211 11111 222 24565 6789
Q ss_pred HHHHHHHhcCeEEECC
Q 013883 415 FCEYLIKEVGVVAIPT 430 (434)
Q Consensus 415 ~~~~Ll~~~GV~v~pG 430 (434)
++.++..+++|.+.-|
T Consensus 331 Vv~~~~~~~~vei~gg 346 (385)
T KOG2862|consen 331 VVAYAMSHYVVEIGGG 346 (385)
T ss_pred HHHHHHHhcCEEeccc
Confidence 9999988877776554
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-13 Score=136.70 Aligned_cols=197 Identities=16% Similarity=0.172 Sum_probs=134.5
Q ss_pred CcHHHHHHHHHHHHcCC-CCCCCC---CC--cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCe
Q 013883 123 GPDFVKDAAIQAIRDGK-NQYARG---HG--VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDE 196 (434)
Q Consensus 123 ~~~~v~~~~~~~~~~~~-~~Y~~~---~G--~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~ 196 (434)
.++.+.+++.+.+.... ..|.-. .| +..+++.++++++ .+ ..+++++++.|+.+++. .+.+||+
T Consensus 93 l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~g--------ae-~alvv~sg~aAi~l~l~-~l~~Gde 162 (454)
T TIGR00474 93 LAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTG--------AE-DALVVNNNAAAVLLALN-TLAKGKE 162 (454)
T ss_pred CCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhC--------CC-cEEEECCHHHHHHHHHH-HhCCcCE
Confidence 46788888888776521 122211 11 2467777777765 33 34556667788888885 4689999
Q ss_pred EEEcCCCchh------HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCc--cc--CCCHHHHHH
Q 013883 197 VILFAPFYDS------YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPT--GK--MFTREELNV 266 (434)
Q Consensus 197 Vlv~~p~y~~------~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPT--G~--~~~~e~l~~ 266 (434)
|++.+..|.. +...+...|++++.++.+. ..|+++++++++++|++|++.+++|++ |. .. ++++
T Consensus 163 VIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~---~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~---dl~~ 236 (454)
T TIGR00474 163 VIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTN---RTHLKDYEDAITENTALLLKVHTSNYRIVGFTEEV---SIAE 236 (454)
T ss_pred EEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCC---CCCHHHHHHhcCcCCEEEEEEccCcccccCCCCCC---CHHH
Confidence 9998876432 2345677899999887642 347999999999999999999999996 53 44 5777
Q ss_pred HHHHHHHcCcEEEEcCcCCccc----cCC-CCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHH
Q 013883 267 IASLCIENDVLVFSDEVYDKLA----FEM-DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQ 338 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~----~~~-~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~ 338 (434)
|+++|++||+++|+|.....+. ++- ..+.+.... ..+-.+++.|..|.+| |...|++++++++++++++
T Consensus 237 I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~-~~GaDiv~fSg~K~Lg--Gp~~G~i~g~~~~i~~l~~ 310 (454)
T TIGR00474 237 LVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVI-AAGVDLVTFSGDKLLG--GPQAGIIVGKKELIERLKK 310 (454)
T ss_pred HHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHh-HcCCCEEEecCccccC--CCeEEEEEECHHHHHhhhh
Confidence 9999999999999998643321 000 011111111 1234588899999986 4458999999988876653
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-13 Score=135.26 Aligned_cols=314 Identities=12% Similarity=0.025 Sum_probs=178.8
Q ss_pred cCCeeEeCCCCCC--CC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFPN--FD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p~--~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...|||..|+-. +. .+|.+.+++.+++......+... -..+.+..+++.+.+..+......+.+++++++++|++
T Consensus 57 G~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~~~-~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve 135 (459)
T PRK06931 57 GNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLD-LTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVE 135 (459)
T ss_pred CCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhccccccc-cCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHH
Confidence 3457888776322 22 36778888888876532211111 12355666777776544211111113566688899999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHHHcC-------------CEEEEEEcCCC-C--CC----CCHHHH----Hhh
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLSMAG-------------AKIKCITLRPP-D--FA----IPIEEL----KST 238 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G-------------~~~~~v~~~~~-~--~~----~d~~~l----~~~ 238 (434)
.+++... ...++|+...-.|++......... ..+..+|.... . ++ -+.+.+ ++.
T Consensus 136 ~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (459)
T PRK06931 136 AAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENF 215 (459)
T ss_pred HHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHH
Confidence 9887643 334678888888988765544321 11223333210 0 11 122222 233
Q ss_pred cc------cCCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEcc
Q 013883 239 IS------KNTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNS 311 (434)
Q Consensus 239 i~------~~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S 311 (434)
+. ++..+|++...+.-.|.+ ++.+.+++|.++|++||+++|+||++.+|...|.......+.-.+| +.+
T Consensus 216 ~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PD----ivt 291 (459)
T PRK06931 216 IEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPD----IIV 291 (459)
T ss_pred HHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCC----EEE
Confidence 32 135666665445555764 5677899999999999999999999999866665444444433344 667
Q ss_pred CChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 013883 312 LGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGF 389 (434)
Q Consensus 312 ~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~ 389 (434)
++|.+| .|+.+|.+++++++ +.+.......+++.++++.+++.+.|+.. ++.+++..+.-...++.|.+..++.++
T Consensus 292 ~gK~l~-gG~Pi~av~~~~~~-~~~~~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~ 369 (459)
T PRK06931 292 MSKAVG-GGLPLAVLGIKKEF-DAWQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPC 369 (459)
T ss_pred eccccc-CCcceeeeeeHHHH-hhccCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 899999 89999988887663 44433334457888899888888888742 122233333223333333333333443
Q ss_pred Ee-ecCCeeEEEeeecCCCC--------C----CCHHHHHHHHHHhcCeEEECC
Q 013883 390 KV-FPSSGTYFVVVDHTPFG--------H----ETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 390 ~~-~~~~~~~~~~~~~~~~~--------~----~~~~~~~~~Ll~~~GV~v~pG 430 (434)
.. +...|. ++-+.+.+.. . .....+...+++ .||++.|+
T Consensus 370 i~~vrG~Gl-m~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~ 421 (459)
T PRK06931 370 IGNVRGRGL-MIGIEIVDERQPADAMGSYPADGELAAAIQKACFE-NGLLLERG 421 (459)
T ss_pred eEeEecCce-EEEEEEccCcccccccccCCccHHHHHHHHHHHHH-CCcEEeec
Confidence 22 233444 4444442110 0 012345555654 59999874
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-14 Score=133.40 Aligned_cols=295 Identities=18% Similarity=0.253 Sum_probs=170.5
Q ss_pred eEeCCCCCCCCCcHHHHHHHHHHHH-cCC--CCCCC-----CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 112 INLGQGFPNFDGPDFVKDAAIQAIR-DGK--NQYAR-----GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 112 i~l~~g~p~~~~~~~v~~~~~~~~~-~~~--~~Y~~-----~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
+|+..|.|.+-.+=|.......++- .++ ..|.. ..-.++|.+.|.++... -|-.+..++.|++++|+++++
T Consensus 1 ~d~d~GDP~~~E~yW~~~~~~~avvi~gw~rMSY~~~~~~~~f~s~eL~~~Ir~LH~~-VGNAvt~gr~IV~GtGsTQL~ 79 (363)
T PF04864_consen 1 ADADSGDPTFFEPYWRRHGDSSAVVIPGWHRMSYFSDSSNGWFISPELERQIRRLHRV-VGNAVTDGRYIVFGTGSTQLF 79 (363)
T ss_dssp EEESS---GGGHHHHCCTHHHH-EEE-TTTT-SSSS-TTSSTTS-HHHHHHHHHHHHH-H-SB--TTSEEEEECHHHHHH
T ss_pred CCcCCCCchhhHHHHHhcCcceeEEEeccccceeEEecCCceeccHHHHHHHHHHHHH-hccccccCcEEEEcCCHHHHH
Confidence 4666777664444444333333321 122 12322 12246888888776654 454555666999999999999
Q ss_pred HHHHHHccCC----C--CeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEE-EecCCCCCcc
Q 013883 184 AATILGLINP----G--DEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAI-LMNTPHNPTG 256 (434)
Q Consensus 184 ~~~~~~l~~~----g--d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i-~~~~p~NPTG 256 (434)
.+++.+|... + -.|+...|.|+.|....+.+.-......-+...+ .+. ......| ++++||||.|
T Consensus 80 ~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w~Gda~~~-------~~~-~~~~~~IElVTSPNNPDG 151 (363)
T PF04864_consen 80 NAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKWAGDASNF-------KNS-DNPSPYIELVTSPNNPDG 151 (363)
T ss_dssp HHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEEEEECCCG-------TT--S-CCGEEEEEESS-TTT-
T ss_pred HHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCccccccHHhh-------ccC-CCCCCeEEEEeCCCCCcc
Confidence 9999998533 1 3588999999999988665543333322222122 111 1123455 7899999999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC-hhhHHH
Q 013883 257 KMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWG 335 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~ 335 (434)
..- +.+ ++.-+..+|.|-||..-.|. ++.. ..|..|++.|+||.-|.+|-|+||.+.+ +++..+
T Consensus 152 ~lr-----~~V---~~g~~~k~I~D~AYYWPhyT----pI~~---~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~k 216 (363)
T PF04864_consen 152 QLR-----EAV---LNGSSGKVIHDLAYYWPHYT----PITA---PADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKK 216 (363)
T ss_dssp ----------S---STTTEEEEEEE-TT-STTTS-------S----B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHH
T ss_pred ccc-----chh---cCCCCcceeeeeeeeccccc----ccCC---CCCCceEEEEEecccCccccccceeeecCHHHHHH
Confidence 642 223 34557778999999985443 2222 2466799999999999999999999997 566677
Q ss_pred HHHHhhccccCCchHHHHHHHHHHhCC-----h-----HHHHHHHHHHHHHHHHHHHHhhhCC-CEee--cC--------
Q 013883 336 VRQAHSFLTFATSTPMQWAATAALRAP-----E-----TYYEELKRDYSAKKAILVEGLNAVG-FKVF--PS-------- 394 (434)
Q Consensus 336 l~~~~~~~~~~~~~~~q~a~~~~L~~~-----~-----~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~--~~-------- 394 (434)
+.......+.+++.-.|.-++.+|+.- . +..+--.+.+++|-+.|++.+.+-+ +.+. ++
T Consensus 217 M~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~ 296 (363)
T PF04864_consen 217 MTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKR 296 (363)
T ss_dssp HHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTC
T ss_pred HHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhcccccc
Confidence 777777778999999998888887641 1 2445556777777788888876542 2221 11
Q ss_pred ---CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 395 ---SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 395 ---~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
...-|.|+++...+. +-|..+++++||.-+.|..|.
T Consensus 297 ~~~psPafAWlkCe~eed----~DC~~~l~~~~I~tr~G~~fg 335 (363)
T PF04864_consen 297 VREPSPAFAWLKCEREED----EDCYAVLREAKIITRSGVLFG 335 (363)
T ss_dssp EEE---SEEEEEESSCGG----SSHHHHHHCTTEEEEEGGGGT
T ss_pred ccCCCCCeEEEecCCccc----ccHHHHHHhCCcccCCCCccC
Confidence 123388999865322 234455678899999998874
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-13 Score=132.12 Aligned_cols=209 Identities=21% Similarity=0.217 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH----HHHcCCEEEEEEcC
Q 013883 149 PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT----LSMAGAKIKCITLR 224 (434)
Q Consensus 149 ~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~~ 224 (434)
..|.+.++++-+ .+ ..+.++++..||..++..++++||.|++++..|.+.... +..+|+++..++..
T Consensus 66 ~~lE~~~a~LEg--------~~-~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~ 136 (396)
T COG0626 66 DALEEALAELEG--------GE-DAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPG 136 (396)
T ss_pred HHHHHHHHHhhC--------CC-cEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCC
Confidence 456666666553 34 677888889999999999999999999999999886554 55678888777543
Q ss_pred CCCCCCCHHHHHhhcc-cCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 225 PPDFAIPIEELKSTIS-KNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 225 ~~~~~~d~~~l~~~i~-~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
+.+.+++++. +++++|++.+|.||+-.+. ++++|+++|+++|+++|+|+.+....+.. .+ ..
T Consensus 137 ------~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~---DI~~i~~~A~~~g~~vvVDNTfatP~~q~------PL--~~ 199 (396)
T COG0626 137 ------DDEALEAAIKEPNTKLVFLETPSNPLLEVP---DIPAIARLAKAYGALVVVDNTFATPVLQR------PL--EL 199 (396)
T ss_pred ------ChHHHHHHhcccCceEEEEeCCCCcccccc---cHHHHHHHHHhcCCEEEEECCcccccccC------hh--hc
Confidence 4456676776 4999999999999999887 68889999999999999999997643321 11 12
Q ss_pred CceEEEccCChhhc-cccceeeeEEeChh-hHHHHHHHhh-ccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFS-LTGWKIGWAIAPPH-LTWGVRQAHS-FLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAIL 380 (434)
Q Consensus 304 ~~~i~i~S~SK~~g-~~G~R~G~~~~~~~-~~~~l~~~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l 380 (434)
+-.|++.|.+|.++ -...=.|.++++.+ +.+.+....+ ......++.-.+.+..-|+. +.-..++..++...+
T Consensus 200 GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkT----L~~Rm~~~~~nA~~I 275 (396)
T COG0626 200 GADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRT----LALRMERHNENALKI 275 (396)
T ss_pred CCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccch----HHHHHHHHHHHHHHH
Confidence 35699999999995 22233576665654 4444433333 24445555555555555554 334455666777777
Q ss_pred HHHhhhC
Q 013883 381 VEGLNAV 387 (434)
Q Consensus 381 ~~~L~~~ 387 (434)
.+.|++.
T Consensus 276 A~~L~~~ 282 (396)
T COG0626 276 AEFLADH 282 (396)
T ss_pred HHHHhcC
Confidence 7888764
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-12 Score=132.21 Aligned_cols=308 Identities=13% Similarity=0.115 Sum_probs=179.9
Q ss_pred cCCeeEeCCCCC--CC-CCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFP--NF-DGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p--~~-~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...+||..|+- .+ -.+|.+.+++.+++++.........- .+....+++.+.+..+.. -+ .+++++++++++.
T Consensus 44 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~-~~~~~~la~~l~~~~~~~--~~-~v~f~~sGseA~e 119 (427)
T TIGR00508 44 GRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMFGGFT-HKPAIELCQKLVKMTPNA--LD-CVFLADSGSVAVE 119 (427)
T ss_pred CCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccccccC-CHHHHHHHHHHHhhCCCC--CC-EEEEeCCcHHHHH
Confidence 346788876631 11 24677888888888763221111001 122344555555443221 24 7999999999999
Q ss_pred HHHHHccC-------CC-CeEEEcCCCchhHHHHHHHc-CCE-------------EEEEEcCCCCCC-----CCHHHHHh
Q 013883 185 ATILGLIN-------PG-DEVILFAPFYDSYEATLSMA-GAK-------------IKCITLRPPDFA-----IPIEELKS 237 (434)
Q Consensus 185 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~-G~~-------------~~~v~~~~~~~~-----~d~~~l~~ 237 (434)
.+++.... +| .+|+...-.|++....+..+ |.. +..++.....+. -|++.+++
T Consensus 120 ~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~ 199 (427)
T TIGR00508 120 VALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAK 199 (427)
T ss_pred HHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHH
Confidence 88875431 23 57888888888865433322 211 111111100111 14667777
Q ss_pred hccc---CCcEEEecCC-CCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccC
Q 013883 238 TISK---NTRAILMNTP-HNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSL 312 (434)
Q Consensus 238 ~i~~---~~~~i~~~~p-~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~ 312 (434)
.+.. +..+|++... .+-.|. .++.+.+++|.++|++||+++|+||++.++...|.......+.-.+| + .++
T Consensus 200 ~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pD--i--~~~ 275 (427)
T TIGR00508 200 LMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPD--I--LCV 275 (427)
T ss_pred HHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCC--E--EEe
Confidence 7642 3445555432 555565 45788999999999999999999999988755554333322322233 2 248
Q ss_pred Chhhccccc-eeeeEEeChhhHHHHHHHh-----hccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh
Q 013883 313 GKTFSLTGW-KIGWAIAPPHLTWGVRQAH-----SFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA 386 (434)
Q Consensus 313 SK~~g~~G~-R~G~~~~~~~~~~~l~~~~-----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~ 386 (434)
+|.++ .|+ .++.+++++++.+.+.... ...+++.++++..++.++|+..++ ++..++.+++.++|++.|++
T Consensus 276 gK~l~-gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~ 352 (427)
T TIGR00508 276 GKALT-GGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLE--GEWQKQVSAIENQLKRELSP 352 (427)
T ss_pred chhhh-cCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH
Confidence 99997 785 7888899999888776321 223566678888888877774211 12345556666666666665
Q ss_pred CCC----EeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 387 VGF----KVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 387 ~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
++. .-+...|. ++-+.+.. ......+..+|+++ ||.+.+.
T Consensus 353 l~~~~~i~~vrg~G~-~~~i~~~~--~~~~~~~~~~l~~~-Gv~~~~~ 396 (427)
T TIGR00508 353 LRKNPVVKDVRVLGA-IGVVEMYK--PVNVEELQKKFVEQ-GVWIRPF 396 (427)
T ss_pred hhcCCCEEeEecccc-EEEEEECC--ccCHHHHHHHHHHC-CeEEEec
Confidence 532 11122233 33444421 12356788887765 9999764
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-12 Score=133.30 Aligned_cols=309 Identities=12% Similarity=0.106 Sum_probs=184.9
Q ss_pred CCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...||+..|.- .+. .+|.+.+++.+++.+..+....... .+.+..+++.+.+.... ..+ .+++++++++|++.
T Consensus 56 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~-~~~~~~lae~L~~~~p~--~~~-~v~f~~SGseAve~ 131 (460)
T PRK06916 56 NEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLA-NVPSILLAEKLIEVVPE--GLK-KVFYSDSGATAVEI 131 (460)
T ss_pred CEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCccccccC-CHHHHHHHHHHHHhCCC--CCC-EEEEeCCcHHHHHH
Confidence 35788766521 122 3677888998888763211111111 23455566666654321 124 79999999999999
Q ss_pred HHHHccC-------CC-CeEEEcCCCchhHHHHHHHc-CC------------EEEEEEcCC--C-CCC--------CCHH
Q 013883 186 TILGLIN-------PG-DEVILFAPFYDSYEATLSMA-GA------------KIKCITLRP--P-DFA--------IPIE 233 (434)
Q Consensus 186 ~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~-G~------------~~~~v~~~~--~-~~~--------~d~~ 233 (434)
+++.... +| .+|+.....|++........ |. .+..+|..+ . .+. -+++
T Consensus 132 AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~ 211 (460)
T PRK06916 132 AIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLE 211 (460)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHH
Confidence 9876532 33 67888888888865433222 21 122233221 0 011 1356
Q ss_pred HHHhhcc---cCCcEEEecC-CCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEE
Q 013883 234 ELKSTIS---KNTRAILMNT-PHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVT 308 (434)
Q Consensus 234 ~l~~~i~---~~~~~i~~~~-p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~ 308 (434)
.+++.+. ++..+|++.. .+.-.|++ ++++.+++|.++|++||+++|.||++.+|...|.......+.-.+|
T Consensus 212 ~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PD---- 287 (460)
T PRK06916 212 ELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPD---- 287 (460)
T ss_pred HHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCC----
Confidence 6677764 3556666654 36666775 5788899999999999999999999998866665444433333344
Q ss_pred EccCChhhcccc-ceeeeEEeChhhHHHHHH-------HhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 013883 309 MNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQ-------AHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAIL 380 (434)
Q Consensus 309 i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~-------~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l 380 (434)
+.+++|.++ .| +.+|.+++++++.+.+.. .....+++.++....++.+.|+..++ +++.++.+++-+++
T Consensus 288 iv~~gK~l~-gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~--~~l~~~~~~~g~~l 364 (460)
T PRK06916 288 IMTAGKGLT-GGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEK--TNLIEQVARKTEYV 364 (460)
T ss_pred eeeeehhhh-cCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHH
Confidence 446899998 88 499999999998876542 11234777788888888888764221 12344555555555
Q ss_pred HHHhhhC---C-CEeecCCeeEEEeeecCCCC-----CCC----HHHHHHHHHHhcCeEEECC
Q 013883 381 VEGLNAV---G-FKVFPSSGTYFVVVDHTPFG-----HET----DIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 381 ~~~L~~~---g-~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~Ll~~~GV~v~pG 430 (434)
.+.|+++ . +.-+...|.|+ -+.+.... ... ...+...+++ .||++.|.
T Consensus 365 ~~~l~~l~~~~~v~~vrG~Glm~-giel~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~ 425 (460)
T PRK06916 365 ATQLEDLFALKHVGDIRQLGLMV-GIELVKNKETKEPFEWTERVGVQVCKRSRE-LGMLTRPL 425 (460)
T ss_pred HHHHHHhhcCCCeEEeecCCcee-eEEeecccccccCCCchhhHHHHHHHHHHH-CCeEEEec
Confidence 5555543 2 21233444443 33332110 000 2356666665 59999873
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.8e-13 Score=138.43 Aligned_cols=189 Identities=15% Similarity=0.069 Sum_probs=133.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCC
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD 227 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~ 227 (434)
+.+..+.+|+.++ .++..+++||++.++.+++.+++++||+|+++..+|.+....+.+.|+++++++...+.
T Consensus 207 I~eAq~~aA~~fg--------A~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~ 278 (755)
T PRK15029 207 FGESEKYAARVFG--------ADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRNR 278 (755)
T ss_pred HHHHHHHHHHHhC--------CCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccccc
Confidence 4566666666665 34478999999999999999999999999999999999999999999999998643222
Q ss_pred ----CCCC-----HHHHHhhccc--CCc--------EEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCc-c
Q 013883 228 ----FAIP-----IEELKSTISK--NTR--------AILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDK-L 287 (434)
Q Consensus 228 ----~~~d-----~~~l~~~i~~--~~~--------~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~-~ 287 (434)
.+++ .+.+++++.. ..+ ++++++| +-.|++. ++++|+++|+++++.|++||||.. |
T Consensus 279 ~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~Gv~~---di~~I~~~~h~~~~~llvDEAhGah~ 354 (755)
T PRK15029 279 YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCY---NAKEAQDLLEKTSDRLHFDEAWYGYA 354 (755)
T ss_pred cCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcceee---CHHHHHHHHHhcCCeEEEECcccccc
Confidence 2344 8899988854 234 8888887 4469888 577799999999999999999965 3
Q ss_pred ccCCCCccccCC-----CCCCCceEEEccCChhhccccce-eeeEEeChh--hH--HHHHHHhhccccCCchH
Q 013883 288 AFEMDHISIASL-----PGMYERTVTMNSLGKTFSLTGWK-IGWAIAPPH--LT--WGVRQAHSFLTFATSTP 350 (434)
Q Consensus 288 ~~~~~~~~~~~~-----~~~~~~~i~i~S~SK~~g~~G~R-~G~~~~~~~--~~--~~l~~~~~~~~~~~~~~ 350 (434)
.|....+....+ ...+..+++++|..|.++ ++. .++++.+.+ .+ ++++........+.|..
T Consensus 355 ~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~--alTQaS~LHv~~~~~~id~~r~~~~l~~~qSTSPSY 425 (755)
T PRK15029 355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN--ALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLY 425 (755)
T ss_pred ccCccccccccccccccccCCCceEEEEchhhccc--chhhhhhheeCCCccccCHHHHHHHHHHHcCCCcHH
Confidence 454332211222 112223599999999985 443 568887543 22 34554444333444444
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-13 Score=130.61 Aligned_cols=185 Identities=17% Similarity=0.225 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHH----HHcCCEEEEEEcCC
Q 013883 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATL----SMAGAKIKCITLRP 225 (434)
Q Consensus 150 ~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~~~ 225 (434)
.|.+.++++.+ .. +.++.+++..|+..++..++..|+.|+..+..|.+...++ ..+|++...+..+
T Consensus 81 ~le~~iaal~g--------a~-~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~- 150 (409)
T KOG0053|consen 81 VLESGIAALEG--------AA-HALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVD- 150 (409)
T ss_pred HHHHHHHHHhC--------Cc-eEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechh-
Confidence 45555555443 33 5788888899999999999999999999999999976654 4578888777665
Q ss_pred CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCc
Q 013883 226 PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYER 305 (434)
Q Consensus 226 ~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~ 305 (434)
|++++++++++++++|++.+|.||+..+. ++++|+++|+++|+++|+|+.+....+. .... .+-
T Consensus 151 -----~~~~~~~~i~~~t~~V~~ESPsNPll~v~---DI~~l~~la~~~g~~vvVDnTf~~p~~~----~pL~----lGA 214 (409)
T KOG0053|consen 151 -----DLKKILKAIKENTKAVFLESPSNPLLKVP---DIEKLARLAHKYGFLVVVDNTFGSPYNQ----DPLP----LGA 214 (409)
T ss_pred -----hHHHHHHhhccCceEEEEECCCCCccccc---cHHHHHHHHhhCCCEEEEeCCcCccccc----Chhh----cCC
Confidence 68899999999999999999999999998 6777888899999999999998775321 1111 234
Q ss_pred eEEEccCChhhc-cccceeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHh
Q 013883 306 TVTMNSLGKTFS-LTGWKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALR 360 (434)
Q Consensus 306 ~i~i~S~SK~~g-~~G~R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~ 360 (434)
.|++.|.+|.+| -...=.|.++.+ .++...++..+....++.++...+....-|+
T Consensus 215 DIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglk 271 (409)
T KOG0053|consen 215 DIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLK 271 (409)
T ss_pred CEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcc
Confidence 589999999995 333446888886 8899999888877777777776555544444
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-13 Score=132.50 Aligned_cols=241 Identities=16% Similarity=0.144 Sum_probs=157.6
Q ss_pred CCcHHHHHHHHHHHHcC----CCCCCCC-------CCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCC-hHHHHHHHHHH
Q 013883 122 DGPDFVKDAAIQAIRDG----KNQYARG-------HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSG-CTEAIAATILG 189 (434)
Q Consensus 122 ~~~~~v~~~~~~~~~~~----~~~Y~~~-------~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G-~~~ai~~~~~~ 189 (434)
+.|+.|++++.+.+.+. ...|... .-+.+.|+.++++++ . -+++ +|++++| +|++++.++..
T Consensus 9 ~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~----~-~~~~-~vvf~~gs~T~a~~~~~~~ 82 (355)
T cd00611 9 ALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLN----I-PDNY-KVLFLQGGATGQFAAVPLN 82 (355)
T ss_pred CCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhC----C-CCCc-eEEEEcCCchHHHHHHHHh
Confidence 35678888888776431 1112221 112345555665554 2 1234 7888877 99999999999
Q ss_pred ccC---CCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCC-C-HHHHHhhcccCCcEEEecCCCCCcccCCCHHHH
Q 013883 190 LIN---PGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAI-P-IEELKSTISKNTRAILMNTPHNPTGKMFTREEL 264 (434)
Q Consensus 190 l~~---~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~-d-~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l 264 (434)
++. +||.|++ .+......++++..|++++.++.++ ++.. + .+..+..+++++++|.+++..|.||+.++
T Consensus 83 l~~~~~~~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~---- 156 (355)
T cd00611 83 LLGDKGTADYVVT-GAWSAKAAKEAKRYGGVVVIVAAKE-EGKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFD---- 156 (355)
T ss_pred cCCCCCeEEEEEC-CHHHHHHHHHHHhcCCCcEEEeccc-ccCCCCCCCHhhcCCCCCCCEEEEeCCcccccEEcc----
Confidence 987 4444443 3333334557788899999988764 2222 3 33333456778999999999999999742
Q ss_pred HHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHH-----
Q 013883 265 NVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA----- 339 (434)
Q Consensus 265 ~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~----- 339 (434)
++++.||+++++|.+...... ...+..+ + +.+.|..|.+|.+| +|+++++++.++++...
T Consensus 157 ----~i~~~~g~~~~VDa~qs~g~~---~idv~~~----~--~~~ss~~K~lGP~G--~g~l~~~~~~~~~~~~~~~~~~ 221 (355)
T cd00611 157 ----EVPDTGGVPLVADMSSNILSR---PIDVSKF----G--VIYAGAQKNLGPAG--VTVVIVRKDLLGKARKITPSML 221 (355)
T ss_pred ----eecccCCCeEEEEccccccCC---CCCHHHh----C--EEEeecccccCCCc--eEEEEECHHHHhhcccCCCCcc
Confidence 344569999999999976331 2222221 2 45566789999777 89999998887654321
Q ss_pred ------hh-ccccCCchHHHHHHHHHHhCCh-H-HHHHHHHHHHHHHHHHHHHhhhC-CC
Q 013883 340 ------HS-FLTFATSTPMQWAATAALRAPE-T-YYEELKRDYSAKKAILVEGLNAV-GF 389 (434)
Q Consensus 340 ------~~-~~~~~~~~~~q~a~~~~L~~~~-~-~~~~~~~~~~~~~~~l~~~L~~~-g~ 389 (434)
.. ...++++....+++.++|+... . .++.+.++.++..+++++.|+++ |+
T Consensus 222 ~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl 281 (355)
T cd00611 222 NYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGF 281 (355)
T ss_pred cHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 11 1134556666677777776533 2 37788889999999999999998 75
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-13 Score=132.80 Aligned_cols=204 Identities=19% Similarity=0.211 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHH----HHHHHcCCEEEEEEcC
Q 013883 149 PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYE----ATLSMAGAKIKCITLR 224 (434)
Q Consensus 149 ~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~G~~~~~v~~~ 224 (434)
.+|.+.++++.+ .+ ..+++++++.|+.+++.+++++||+|+++.+.|.+.. ..+...|++++.++.+
T Consensus 67 ~~lE~~la~leg--------~~-~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~ 137 (384)
T PRK06434 67 QAFEEKYAVLEN--------AE-HALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTD 137 (384)
T ss_pred HHHHHHHHHHhC--------CC-cEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCC
Confidence 456666666654 34 5677777789999999999999999999887666543 5667789999999876
Q ss_pred C-CCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCC
Q 013883 225 P-PDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM 302 (434)
Q Consensus 225 ~-~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~ 302 (434)
+ +++. +++ ++++|++..|.|||+.+. ++++|+++|++++ +++|.++..- +.+. ++.
T Consensus 138 ~~~~~~---------l~~~~tklv~~e~~snpt~~v~---Di~~I~~la~~~~--lvVD~t~~s~-~~~~--pl~----- 195 (384)
T PRK06434 138 RLNSLD---------FDPSNYDLIYAESITNPTLKVP---DIKNVSSFCHEND--VIVDATFASP-YNQN--PLD----- 195 (384)
T ss_pred Chhhee---------ecCCCeeEEEEEcCCCCCceee---cHHHHHHHHHHcC--eEEECCCCCc-ccCC--chh-----
Confidence 4 2222 223 689999999999999886 6788999999998 4669997432 1111 111
Q ss_pred CCceEEEccCChhhcccc-ceeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 013883 303 YERTVTMNSLGKTFSLTG-WKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAIL 380 (434)
Q Consensus 303 ~~~~i~i~S~SK~~g~~G-~R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l 380 (434)
.+-.+++.|.+|.++-+| .-.|.++.+ +++.++++..+.......+....+.+..-|+. ++...++..++...+
T Consensus 196 ~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~t----L~~R~~r~~~~a~~~ 271 (384)
T PRK06434 196 LGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKT----LGLRMEKHNKNGMEL 271 (384)
T ss_pred cCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCc----HHHHHHHHHHHHHHH
Confidence 234588999999996333 335777664 55666666554333344444433333333333 455556667777777
Q ss_pred HHHhhhC
Q 013883 381 VEGLNAV 387 (434)
Q Consensus 381 ~~~L~~~ 387 (434)
.+.|++.
T Consensus 272 a~~L~~~ 278 (384)
T PRK06434 272 ARFLRDS 278 (384)
T ss_pred HHHHHcC
Confidence 7888765
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.4e-13 Score=146.03 Aligned_cols=308 Identities=13% Similarity=0.106 Sum_probs=180.3
Q ss_pred cCCeeEeCCCCCCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 108 KHGAINLGQGFPNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
+...||+..|+..+. .+|.+.+++.+++...... .... .+....+++.+.+.... ..+ .++++++|++|++.+
T Consensus 584 G~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l~~~--~~~~-~~~~~elae~L~~~~p~--~~~-~v~f~~SGsEA~e~A 657 (972)
T PRK06149 584 GRSYLDMVNNVTVLGHGHPRLAAAAARQWSLLNTN--SRFH-YAAVAEFSERLAALAPD--GLD-TVFLVNSGSEANDLA 657 (972)
T ss_pred CCEEEECCCCccccCCCCHHHHHHHHHHHHhcccc--cccc-CHHHHHHHHHHHHhCCC--CcC-EEEEeCCchHHHHHH
Confidence 345788887765555 5788999998888764321 1112 23445556665544321 124 799999999999999
Q ss_pred HHHcc--CCCCeEEEcCCCchhHHHHHHHc-CC-------------EEEEEEcCC--C-CCC-CC-----HHHHHhhcc-
Q 013883 187 ILGLI--NPGDEVILFAPFYDSYEATLSMA-GA-------------KIKCITLRP--P-DFA-IP-----IEELKSTIS- 240 (434)
Q Consensus 187 ~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-G~-------------~~~~v~~~~--~-~~~-~d-----~~~l~~~i~- 240 (434)
++... ...+.|+..+-.|++........ +. .+..++... . .+. .+ .+.+++.+.
T Consensus 658 lklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~ 737 (972)
T PRK06149 658 IRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEE 737 (972)
T ss_pred HHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHH
Confidence 88432 23356888888787644222111 10 012222211 0 011 11 233333332
Q ss_pred -----cCCcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCC
Q 013883 241 -----KNTRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLG 313 (434)
Q Consensus 241 -----~~~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~S 313 (434)
++..+|++.......|. .++++.+++|.++|++||+++|+||++.+|...|. .+.+..+.-.+| +.+++
T Consensus 738 ~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PD----ivt~g 813 (972)
T PRK06149 738 LDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPD----IITMA 813 (972)
T ss_pred HhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCC----EEEec
Confidence 23455665544444454 56777899999999999999999999988865554 223333322333 44889
Q ss_pred hhhccccceeeeEEeChhhHHHHHHH-hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh----CC
Q 013883 314 KTFSLTGWKIGWAIAPPHLTWGVRQA-HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA----VG 388 (434)
Q Consensus 314 K~~g~~G~R~G~~~~~~~~~~~l~~~-~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g 388 (434)
|.+| .|..+|.+++++++.+.+... ....+++.++.+.+++.+.|+.-++ +++.++.+++-++|++.|++ .+
T Consensus 814 K~lg-~G~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~--e~l~~~~~~~G~~l~~~L~~l~~~~~ 890 (972)
T PRK06149 814 KGMG-NGHPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLRE--EKLQENARRVGDHLKARLEALADRHP 890 (972)
T ss_pred cccc-CCeeeEEEEEcHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999 899999999999998777531 1124567788888888888875221 13344454455555555544 33
Q ss_pred CE-eecCCeeEEEeeecCCC-----C-CCCHHHHHHHHHHhcCeEEECC
Q 013883 389 FK-VFPSSGTYFVVVDHTPF-----G-HETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 389 ~~-~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
+. .+...|. ++-+.+... + ......++++++++ ||++.|.
T Consensus 891 ~i~~vrG~Gl-~~gvel~~~~~~~~~~~~~~~~i~~~l~~~-Gvl~~~~ 937 (972)
T PRK06149 891 LIGAVHGMGL-YLGVELVRDRQTLEPATEETAAICDRLLEL-GVIMQPT 937 (972)
T ss_pred CeEEEeecce-EEEEEEecCcccCCCChHHHHHHHHHHHhC-CeEEeec
Confidence 32 2233344 444444211 0 00134567777665 9999874
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.6e-13 Score=146.06 Aligned_cols=309 Identities=12% Similarity=0.048 Sum_probs=183.7
Q ss_pred cCCeeEeCCCCCCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 108 KHGAINLGQGFPNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
+...|||..|...+. .+|.+.+++.+++....... ... .+.+..+++.+....... .+ .++++++++||++.+
T Consensus 623 G~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l~~~~--~~~-~~~~~~lAe~L~~~~p~~--~~-~v~f~nSGsEA~e~A 696 (1013)
T PRK06148 623 GRAYLDCFNNVCHVGHAHPRVVAAAARQAARLNTNT--RYL-HDAIVAYAERLTATLPDG--LT-VAFFVNSGSEANSLA 696 (1013)
T ss_pred CCEEEEcccChhhcCCCCHHHHHHHHHHHhhcCCcC--CcC-CHHHHHHHHHHHHhCCCC--cC-EEEEeCCcHHHHHHH
Confidence 345688876643333 36889999998887632211 111 344555666666544221 24 789999999999999
Q ss_pred HHHcc--CCCCeEEEcCCCchhHHHHHHHc-C------------CEEEEEEcCC---CCCCC-C-------HHHHHhhcc
Q 013883 187 ILGLI--NPGDEVILFAPFYDSYEATLSMA-G------------AKIKCITLRP---PDFAI-P-------IEELKSTIS 240 (434)
Q Consensus 187 ~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-G------------~~~~~v~~~~---~~~~~-d-------~~~l~~~i~ 240 (434)
++... ....+|+.....|++........ | ..+..++... ..+.. + .+.+++.+.
T Consensus 697 lklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~ 776 (1013)
T PRK06148 697 LRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIA 776 (1013)
T ss_pred HHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHH
Confidence 87653 23467888888888764332211 1 0111111110 00110 1 134444442
Q ss_pred ------cCCcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccC
Q 013883 241 ------KNTRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSL 312 (434)
Q Consensus 241 ------~~~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~ 312 (434)
+++.+|++.....-.|. .++++.+++|.++|++||+++|.||++.+|...|. .+....+.-.+| +.++
T Consensus 777 ~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PD----ivt~ 852 (1013)
T PRK06148 777 AMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPD----IVTM 852 (1013)
T ss_pred hhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcc----eeee
Confidence 24556666544444555 55777799999999999999999999999866554 333333332344 6678
Q ss_pred ChhhccccceeeeEEeChhhHHHHHHH-hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh----C
Q 013883 313 GKTFSLTGWKIGWAIAPPHLTWGVRQA-HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA----V 387 (434)
Q Consensus 313 SK~~g~~G~R~G~~~~~~~~~~~l~~~-~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~----~ 387 (434)
+|.+| .|+.+|.+++++++.+.+..- ....+++.++.+..++.+.|+..++ +++.++.+++-++|++.|++ .
T Consensus 853 gK~lg-gG~Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~--e~l~~~~~~~G~~l~~~L~~l~~~~ 929 (1013)
T PRK06148 853 GKPIG-NGHPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIED--EDLQRNALEIGNYLLAGLRELQDRF 929 (1013)
T ss_pred ccccc-CCcceEEEEEcHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999 899999999999998776432 1236788889998888888875321 12344445555555555544 3
Q ss_pred CCEeecCCeeEEEeeecCCCC--CCC----HHHHHHHHHHhcCeEEECC
Q 013883 388 GFKVFPSSGTYFVVVDHTPFG--HET----DIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~Ll~~~GV~v~pG 430 (434)
++......-|+++-+.+.... ... ...+.+.+++ +||++.+.
T Consensus 930 ~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~ 977 (1013)
T PRK06148 930 DIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARE-RGILIGTE 977 (1013)
T ss_pred CCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHh-CCeEEecc
Confidence 332222233444444442110 111 2346666665 59999873
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-12 Score=129.84 Aligned_cols=274 Identities=18% Similarity=0.193 Sum_probs=188.3
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccC-----C---
Q 013883 122 DGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLIN-----P--- 193 (434)
Q Consensus 122 ~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~-----~--- 193 (434)
.+++...+.+...+..+.....-..+..++.+.+..++.+.++.+-.. .=.+|+|+++++.+++.+... .
T Consensus 73 ~~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~--~G~~t~GgTean~lal~aar~~~~~~~~~~ 150 (460)
T COG0076 73 RVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEA--SGTFTSGGTEANLLALLAARERWRKRALAE 150 (460)
T ss_pred CCHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCC--ceEEEcChHHHHHHHHHHHHHHHHHHhhhc
Confidence 345667777777776543222122266899999999999998876222 468899999999877665421 1
Q ss_pred C------CeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcE--EEecCCCCCcccCCCHHHHH
Q 013883 194 G------DEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRA--ILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 194 g------d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~--i~~~~p~NPTG~~~~~e~l~ 265 (434)
+ .+|+++.-.|+.+...+..+|.....++.++.+..+|++++++++.+++.. |+-+...-+||.+ ++++
T Consensus 151 ~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~i---Ddi~ 227 (460)
T COG0076 151 SGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSI---DDIE 227 (460)
T ss_pred ccccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCceEEEEecCCCCCcc---CCHH
Confidence 1 169999999999999999999999999998767899999999999997766 7777889999975 3688
Q ss_pred HHHHHHHHcCcEEEEcCcCCcccc--CCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh--hHHHHHHHhh
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAF--EMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH--LTWGVRQAHS 341 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~--~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~--~~~~l~~~~~ 341 (434)
+|.++|+++++|+.+|.||+++.. ...... ..+ +...-.-+.-++.|.. +.-..+||++.+.+ +.+.+.....
T Consensus 228 ~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~-~~f-~l~~vdSIt~d~HK~g-~aP~~~G~il~rd~e~l~~~~~~~~~ 304 (460)
T COG0076 228 ELADIAEEYGIWLHVDAAFGGFLLPFLEPDGR-WDF-GLEGVDSITVDGHKYG-LAPIGCGVVLFRDEEALRRILIFADY 304 (460)
T ss_pred HHHHHHHHcCCcEEEEccccceeecccCccch-hhc-CCCCceEEEECccccc-CCCCCceEEEEECHHHhhhhhhcccc
Confidence 899999999999999999998863 111111 011 1112223456899965 46678999998754 3333321111
Q ss_pred ccc--------cCCchHH--HHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCC-CEeec-CCeeEEEeeec
Q 013883 342 FLT--------FATSTPM--QWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVG-FKVFP-SSGTYFVVVDH 404 (434)
Q Consensus 342 ~~~--------~~~~~~~--q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~-~~~~~~~~~~~ 404 (434)
++. ...+.++ ..++...|.. +.+.++++.++..+..+.+.+.|++.| +++.. |..+ .+.+++
T Consensus 305 yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~-~V~fr~ 379 (460)
T COG0076 305 YLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELP-IVAFRL 379 (460)
T ss_pred cCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccc-eEEEEc
Confidence 111 1111122 1222222332 356788889999999999999999986 88765 4444 455555
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-12 Score=126.37 Aligned_cols=281 Identities=15% Similarity=0.134 Sum_probs=184.0
Q ss_pred cHHHHHHHHHHHHc----CCCCCCCCCCcH---HHHHHHHHHHHhhcCCCCCCCCcEEEcCC-hHHHHHHHHHHccCCCC
Q 013883 124 PDFVKDAAIQAIRD----GKNQYARGHGVP---EFNSAIASRFKKDSGLEVDPEKEVTVTSG-CTEAIAATILGLINPGD 195 (434)
Q Consensus 124 ~~~v~~~~~~~~~~----~~~~Y~~~~G~~---~lr~~ia~~l~~~~g~~~~~~~~i~~t~G-~~~ai~~~~~~l~~~gd 195 (434)
|..+.+++.+.+.+ +...|....-.+ ++.+.+.+.+.+.++.+ .+.+|++++| +++++++++..++.+||
T Consensus 4 p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~--~~~~v~~~~gsgT~a~ea~~~nl~~~~~ 81 (349)
T TIGR01364 4 PEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIP--DNYEVLFLQGGATGQFAAVPLNLLAEGK 81 (349)
T ss_pred CHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCC--CCceEEEEcCCchHHHHHHHHhcCCCCC
Confidence 55677777776653 111222222223 55555566666666642 2225777766 99999999999999999
Q ss_pred eEEEcCCCchhH--HHHHHHcCCEEEEEEcCC---CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHH
Q 013883 196 EVILFAPFYDSY--EATLSMAGAKIKCITLRP---PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASL 270 (434)
Q Consensus 196 ~Vlv~~p~y~~~--~~~~~~~G~~~~~v~~~~---~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~l 270 (434)
++++..-+.+++ .++++..|+ +..+..++ ....+|++.++ +++++++|.+++..+.||+..+ ++
T Consensus 82 ~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~--------~l 150 (349)
T TIGR01364 82 VADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR--------EL 150 (349)
T ss_pred eEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc--------ee
Confidence 988887776664 567888999 77776542 12345666555 3568899999999999999764 45
Q ss_pred HHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHH----------h
Q 013883 271 CIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA----------H 340 (434)
Q Consensus 271 a~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~----------~ 340 (434)
++.+++++++|.+..... ....+.. .+ +++.|..|.+|.+| +|+++.+++.++++... .
T Consensus 151 ~~~~~~l~iVDavss~g~---~~id~~~----~d--~~~~ssqK~lgP~G--lg~l~~s~~~~~~~~~~~~~~~~~~~~~ 219 (349)
T TIGR01364 151 PDVKNAPLVADMSSNILS---RPIDVSK----FG--LIYAGAQKNIGPAG--LTVVIVRKDLLGRASRITPSMLNYKIHA 219 (349)
T ss_pred cccCCCeEEEEccccccC---ccCCHHH----cc--EEEEecccccCCCc--eEEEEECHHHHhhcccCCCCcchHHHHH
Confidence 667899999999987632 2222222 12 78889999999777 89999998887654211 1
Q ss_pred --hccccCCchHHHHHHHHHHhCCh-H-HHHHHHHHHHHHHHHHHHHhhhC-CCEeecC----CeeEEEeeecCCCCCCC
Q 013883 341 --SFLTFATSTPMQWAATAALRAPE-T-YYEELKRDYSAKKAILVEGLNAV-GFKVFPS----SGTYFVVVDHTPFGHET 411 (434)
Q Consensus 341 --~~~~~~~~~~~q~a~~~~L~~~~-~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~~~~~~~ 411 (434)
....++++....+++..+|+... + .++++.++.++..+++++.|+++ |+..... ..+..+-+.++... .
T Consensus 220 ~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~--~ 297 (349)
T TIGR01364 220 ENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEE--L 297 (349)
T ss_pred hcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChh--H
Confidence 12235667777777777777543 3 48888999999999999999998 5533321 12222333332211 1
Q ss_pred HHHHHHHHHHhcCeEEECCC
Q 013883 412 DIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 412 ~~~~~~~Ll~~~GV~v~pG~ 431 (434)
..++...+ .+.|+.+.+|.
T Consensus 298 ~~~~~~~~-~~~Gi~~~~~~ 316 (349)
T TIGR01364 298 EKRFLKEA-EERGLVSLKGH 316 (349)
T ss_pred hHHHHHHH-HHCCCcccCCc
Confidence 23444444 45699887774
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-12 Score=128.61 Aligned_cols=296 Identities=14% Similarity=0.093 Sum_probs=175.8
Q ss_pred cHHHHHHHHHHHHcCCCCCCC-CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc-------CCC-
Q 013883 124 PDFVKDAAIQAIRDGKNQYAR-GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI-------NPG- 194 (434)
Q Consensus 124 ~~~v~~~~~~~~~~~~~~Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~-------~~g- 194 (434)
.+.+.+++.+++.+-.+.+.. ..+.+ -..+|+.|.+..+.. +-+ +|++++|+++|++.+++..+ +|.
T Consensus 62 ~~~i~~Ai~~Q~~~l~~~~~~~~t~~P--a~~LA~~L~~~aP~~-~l~-~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r 137 (449)
T COG0161 62 RPEIAEAIKKQLDKLPHVMFGGFTHEP--AIELAEKLAELAPEG-GLD-HVFFTDSGSEAVETALKMALQYWRARGQPQR 137 (449)
T ss_pred CHHHHHHHHHHHHhCCchhhcccCCch--HHHHHHHHHHhCCCC-Ccc-EEEEeCCchHHHHHHHHHHHHHHHhcCCCcc
Confidence 466888888888774332111 12223 333555555443311 123 89999999999999987653 333
Q ss_pred CeEEEcCCCchhHHHHHHHcC--------------CEEEEEEcCC---C----CCC----CCHHHHHhhccc---CCcEE
Q 013883 195 DEVILFAPFYDSYEATLSMAG--------------AKIKCITLRP---P----DFA----IPIEELKSTISK---NTRAI 246 (434)
Q Consensus 195 d~Vlv~~p~y~~~~~~~~~~G--------------~~~~~v~~~~---~----~~~----~d~~~l~~~i~~---~~~~i 246 (434)
.+++.-...|++-.-.....| ..+..+|... . .+. -.++.|++.+.. ++.+-
T Consensus 138 ~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAA 217 (449)
T COG0161 138 KKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAA 217 (449)
T ss_pred eEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEE
Confidence 347777888876322211111 1122222211 0 111 225667776654 44454
Q ss_pred EecCC-CCC-cccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccccee
Q 013883 247 LMNTP-HNP-TGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKI 323 (434)
Q Consensus 247 ~~~~p-~NP-TG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~ 323 (434)
++..| ..- +|+.+ ++..|+++.++|++||+++|.||+-.+|...|.........-.+| +-+++|.+.-.-+.+
T Consensus 218 fI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PD----i~~~aKGLT~GY~Pl 293 (449)
T COG0161 218 FIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPD----ILCLAKGLTGGYLPL 293 (449)
T ss_pred EEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCC----eeeecccccccchhh
Confidence 55555 444 78855 555699999999999999999999999988876555544444455 667899987333478
Q ss_pred eeEEeChhhHHHHHHH-----hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh-C-CCEee--cC
Q 013883 324 GWAIAPPHLTWGVRQA-----HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA-V-GFKVF--PS 394 (434)
Q Consensus 324 G~~~~~~~~~~~l~~~-----~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~--~~ 394 (434)
|.+++..++.+.+..- ....+|+.++.+.+++.+.|+-.+ -+.+.++.++.-.++.+.|+. + +.+.+ ..
T Consensus 294 ~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e--~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR 371 (449)
T COG0161 294 SAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILE--EEDLLERVAEIGAYLQAGLQAALADHPLVGDVR 371 (449)
T ss_pred HhHhhhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHhcccCCcEEEee
Confidence 8888888888877553 122367888888888887776421 123444455555666666665 2 21222 23
Q ss_pred CeeEEEeeecCCCCCCC-------HHHHHHHHHHhcCeEEECC
Q 013883 395 SGTYFVVVDHTPFGHET-------DIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 395 ~~~~~~~~~~~~~~~~~-------~~~~~~~Ll~~~GV~v~pG 430 (434)
.-|++.-+.+.+..... ...+....++ .|+.++|.
T Consensus 372 ~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e-~Gl~iRp~ 413 (449)
T COG0161 372 GLGLIGAIELVADKATKTPFEARVGARVRAAALE-RGLLIRPL 413 (449)
T ss_pred ccceEEEEEEecccccccchhhhHHHHHHHHHHH-CCeEEeec
Confidence 45556555553321111 3345555544 59999996
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-13 Score=127.50 Aligned_cols=225 Identities=20% Similarity=0.250 Sum_probs=138.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEE---cCChHHHHHHHHHHccCCCCeEEE-cCCCchhHHHHH----------HHcCCE
Q 013883 152 NSAIASRFKKDSGLEVDPEKEVTV---TSGCTEAIAATILGLINPGDEVIL-FAPFYDSYEATL----------SMAGAK 217 (434)
Q Consensus 152 r~~ia~~l~~~~g~~~~~~~~i~~---t~G~~~ai~~~~~~l~~~gd~Vlv-~~p~y~~~~~~~----------~~~G~~ 217 (434)
|+.+-+.+.+.+|. | .-++ --++|+||..++..+++|||+++. .-.-|.....++ +.+|.+
T Consensus 56 Rd~le~iyA~vfga----E-~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~ 130 (403)
T PF06838_consen 56 RDKLERIYADVFGA----E-DALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIK 130 (403)
T ss_dssp HHHHHHHHHHHCT-----S-EEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-E
T ss_pred HHHHHHHHHHHhCc----h-hhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCce
Confidence 66666667666654 3 2222 234599999999999999999885 445676666664 557789
Q ss_pred EEEEEcCCCCCCCCHHHHHhhcccCCcEEEec-CCCCCcccCCCHHHHHHHHHHHHHc--CcEEEEcCcCCccccCCCCc
Q 013883 218 IKCITLRPPDFAIPIEELKSTISKNTRAILMN-TPHNPTGKMFTREELNVIASLCIEN--DVLVFSDEVYDKLAFEMDHI 294 (434)
Q Consensus 218 ~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~-~p~NPTG~~~~~e~l~~i~~la~~~--~~~iI~Deay~~~~~~~~~~ 294 (434)
...|++.+ ++.+|+|.+++++++++|+|++. +--.-+-..++.++++++++++++. ++++++|.+|.+|.-..++.
T Consensus 131 Y~~v~L~~-dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~ 209 (403)
T PF06838_consen 131 YREVPLTE-DGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPT 209 (403)
T ss_dssp EEE--B-T-TSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GG
T ss_pred eEEEeecC-CCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCcc
Confidence 99999986 78999999999999999999986 3344444577999999999999874 99999999999987443322
Q ss_pred cccCCCCCCCceEEEccCChhhccccc--eeeeEEeChhhHHHHHHHhhccc----cCCchHHHHHHHHHHhCChHHHHH
Q 013883 295 SIASLPGMYERTVTMNSLGKTFSLTGW--KIGWAIAPPHLTWGVRQAHSFLT----FATSTPMQWAATAALRAPETYYEE 368 (434)
Q Consensus 295 ~~~~~~~~~~~~i~i~S~SK~~g~~G~--R~G~~~~~~~~~~~l~~~~~~~~----~~~~~~~q~a~~~~L~~~~~~~~~ 368 (434)
. -+-.++.+|+-|+.| .|+ -.||+++++++++++......-. .+++.-..+.+..-|= .--+
T Consensus 210 ~-------vGADl~aGSLIKNpG-GgiAptGGYIaGr~~lVe~~a~RLTaPGiG~e~G~t~~~~R~~~QGlF----lAP~ 277 (403)
T PF06838_consen 210 E-------VGADLMAGSLIKNPG-GGIAPTGGYIAGRKDLVERAAYRLTAPGIGKEVGATLGTNRLMFQGLF----LAPH 277 (403)
T ss_dssp G-------GT-SEEEEETTSGGG-TTT-SS-EEEEESHHHHHHHHHHHS-TTTGGGSS--TTTHHHHHHHHH----HHHH
T ss_pred c-------cchhheeccceeCCC-CCccCcCCEEechHHHHHHHHhhhcCCccccccccCcchHHHHHhHHh----hchH
Confidence 2 233488999999998 665 25899999999987754321110 1111111222211111 1123
Q ss_pred HHHHHHHHHHHHHHHhhhCCCEeecC
Q 013883 369 LKRDYSAKKAILVEGLNAVGFKVFPS 394 (434)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~g~~~~~~ 394 (434)
+..+..+-.......++++|+++.|.
T Consensus 278 vV~eAlKgaif~A~~fe~lG~~v~P~ 303 (403)
T PF06838_consen 278 VVGEALKGAIFAAALFEKLGFEVSPK 303 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEES-
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCCCC
Confidence 44444445556667788899999864
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.54 E-value=9e-14 Score=135.67 Aligned_cols=243 Identities=14% Similarity=0.130 Sum_probs=156.5
Q ss_pred CeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 110 GAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 110 ~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
..+||..|+ -.+. .+|.+.+++.+++....+...+ ....+...++++.+.+..+. ..+ .+++++++++|++.+
T Consensus 17 ~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~-~~~~~~~~~la~~L~~~~p~--~~~-~v~f~~sGseAve~A 92 (339)
T PF00202_consen 17 EYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFS-GFTHPEAAELAEKLAELFPG--GLD-RVFFANSGSEAVEAA 92 (339)
T ss_dssp EEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTT-TSEEHHHHHHHHHHHHHSST--TEE-EEEEESSHHHHHHHH
T ss_pred EEEECCCCccceecCCCccccchhHHHHhhhccccccc-ceeccchhhhhhhhhhcccc--ccc-eeeeccCchHHHHHH
Confidence 568886552 2222 3577888898888765333222 23345567777777766633 233 899999999999999
Q ss_pred HHHcc--------CCCCeEEEcCCCchhHHHHHHHcC-------------CEEEEEEcCCCCC----CCCHHHHHhhc--
Q 013883 187 ILGLI--------NPGDEVILFAPFYDSYEATLSMAG-------------AKIKCITLRPPDF----AIPIEELKSTI-- 239 (434)
Q Consensus 187 ~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~G-------------~~~~~v~~~~~~~----~~d~~~l~~~i-- 239 (434)
++... .....|+.....|++........+ ..+..+|++.... .-..+.+++.+
T Consensus 93 lkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 172 (339)
T PF00202_consen 93 LKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAA 172 (339)
T ss_dssp HHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHh
Confidence 88765 233688989999987543222211 1345666653100 00011122222
Q ss_pred --ccCCcEEEecCCCCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhh
Q 013883 240 --SKNTRAILMNTPHNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTF 316 (434)
Q Consensus 240 --~~~~~~i~~~~p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 316 (434)
.++..+|++...+...|... +.+.+++|.++|++||+++|+||++.+|...|.......+.-.+| +-+++|.+
T Consensus 173 ~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PD----iv~~gK~l 248 (339)
T PF00202_consen 173 LNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPD----IVTFGKGL 248 (339)
T ss_dssp HHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSS----EEEEEGGG
T ss_pred hcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCc----ccccccch
Confidence 33556666654455556644 566799999999999999999999999977666554444443444 45568999
Q ss_pred ccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhC
Q 013883 317 SLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRA 361 (434)
Q Consensus 317 g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~ 361 (434)
+ .|+.+|.+++++++.+.+.......+++.++.+..++.+.|+.
T Consensus 249 ~-gG~p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~ 292 (339)
T PF00202_consen 249 G-GGLPISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALATLEI 292 (339)
T ss_dssp G-TTSSEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHH
T ss_pred h-hhhhcccccccchhhccccccccccccccchHhhhhhhhHHHh
Confidence 9 8899999999999887665444556788888888888888875
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-12 Score=128.02 Aligned_cols=286 Identities=15% Similarity=0.112 Sum_probs=182.4
Q ss_pred CCcHHHHHHHHHHHHcC----CCCCCCCCC---cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCC
Q 013883 122 DGPDFVKDAAIQAIRDG----KNQYARGHG---VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPG 194 (434)
Q Consensus 122 ~~~~~v~~~~~~~~~~~----~~~Y~~~~G---~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~g 194 (434)
..|+.+++++.+.+.+- ...+....- ..++.+.+.+.+.+..+.+ +..+-++++++++.+++.++..++.+|
T Consensus 13 ~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgt~~~Ea~~~nl~~~g 91 (360)
T PRK05355 13 MLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIP-DNYKVLFLQGGASLQFAMVPMNLLGGG 91 (360)
T ss_pred CCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEEcCCchHHHHHHHHhcCCCC
Confidence 34677888877765321 111111111 1255555555566555542 122134555778889999999999999
Q ss_pred CeEEEcCCCchhH--HHHHHHcCCEEEEEEcCCCCCCCCHHHHHh-hcccCCcEEEecCCCCCcccCCCHHHHHHHHHHH
Q 013883 195 DEVILFAPFYDSY--EATLSMAGAKIKCITLRPPDFAIPIEELKS-TISKNTRAILMNTPHNPTGKMFTREELNVIASLC 271 (434)
Q Consensus 195 d~Vlv~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~-~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la 271 (434)
|++++..-..+++ .++++..|.. ..+..++.....+..++++ .+++++++|.+++-.+.||+..+ ++++|
T Consensus 92 ~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~--~i~~i---- 164 (360)
T PRK05355 92 KKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLSDDAAYVHYTSNETIDGTEFH--ELPDT---- 164 (360)
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccCCCCCCChhhccCCCCCCEEEEccCCCcceEecC--ccccc----
Confidence 9988877766664 5678888865 5555443123334444444 77778999999999999999874 34444
Q ss_pred HHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHH-----------h
Q 013883 272 IENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA-----------H 340 (434)
Q Consensus 272 ~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~-----------~ 340 (434)
+|+++|+|.+..... ....+..+ + +++.|-.|.+|.+| +|+++++++.++++... .
T Consensus 165 --~g~l~vVDavss~g~---~~idv~~~----d--~~~~ssqK~lgP~G--lg~l~~s~~~l~~~~~~~~~~~~~~~~~~ 231 (360)
T PRK05355 165 --GDVPLVADMSSDILS---RPIDVSKF----G--LIYAGAQKNIGPAG--LTIVIVREDLLGRALPSIPSMLDYKTHAD 231 (360)
T ss_pred --CCCcEEEEcCccccC---ccCCHHHc----c--EEEEeccccccCCc--eEEEEECHHHHhhcccCCChHHHHHHHHh
Confidence 899999999987632 22222221 2 78888899999777 89999998887665431 1
Q ss_pred -hccccCCchHHHHHHHHHHhCCh-H-HHHHHHHHHHHHHHHHHHHhhhCCCE-eecC---CeeEEEeeecCCCCCCCHH
Q 013883 341 -SFLTFATSTPMQWAATAALRAPE-T-YYEELKRDYSAKKAILVEGLNAVGFK-VFPS---SGTYFVVVDHTPFGHETDI 413 (434)
Q Consensus 341 -~~~~~~~~~~~q~a~~~~L~~~~-~-~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~---~~~~~~~~~~~~~~~~~~~ 413 (434)
....++++....+++..+|+... + .++++.++.++..+++++.|+++|+. ...+ ..+..+.+.++. +. +..
T Consensus 232 ~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~-~~-~~~ 309 (360)
T PRK05355 232 NDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLAD-EE-LDK 309 (360)
T ss_pred cCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCC-hH-HHH
Confidence 12246677777777777777632 3 47888899999999999999998752 2111 122223333322 11 223
Q ss_pred HHHHHHHHhcCeEEECCC
Q 013883 414 AFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 414 ~~~~~Ll~~~GV~v~pG~ 431 (434)
++...+. +.|+.+.+|.
T Consensus 310 ~~~~~~~-~~Gi~~~~~~ 326 (360)
T PRK05355 310 KFLAEAK-AAGLVGLKGH 326 (360)
T ss_pred HHHHHHH-HCCCcccCCC
Confidence 4445554 4699887764
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-12 Score=129.77 Aligned_cols=291 Identities=14% Similarity=0.085 Sum_probs=171.8
Q ss_pred eeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcC-ChHHHHHHHHHH
Q 013883 111 AINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTS-GCTEAIAATILG 189 (434)
Q Consensus 111 ~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~-G~~~ai~~~~~~ 189 (434)
.++|..| |.-.++..+++++.+......+ ..+ -..++.+.+.+.+.+..+.+ ++. +|+++. +++++++.++..
T Consensus 13 ~~~f~~G-p~~~~~~~v~~a~~~~~~~~~h-r~~--~f~~~~~~~r~~l~~l~~~~-~~~-~v~~~~gs~T~~~~~~~~~ 86 (378)
T PRK03080 13 DPRFSSG-PCKKRPGWQLEALADALLGRSH-RQK--PVKALLKRVIEGTRELLSLP-EGY-EVGIVPGSDTGAWEMALWS 86 (378)
T ss_pred CCCcCCC-CcCCChHHHHHHHHhhhcccCc-CCH--HHHHHHHHHHHHHHHHhCCC-CCc-eEEEECCchHHHHHHHHHh
Confidence 4455444 2222333377776644332111 111 12233333344444444431 233 688764 899999999999
Q ss_pred ccCC-CCeEEEcCCCchhH-HH-HHHHcCC-EEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHH
Q 013883 190 LINP-GDEVILFAPFYDSY-EA-TLSMAGA-KIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 190 l~~~-gd~Vlv~~p~y~~~-~~-~~~~~G~-~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
++++ ++.|+. .-.|+.- .. +.+..|+ +++.++.++ +..+|++.++ . ++.|.+++..|.||...+ ++
T Consensus 87 l~~~~~~~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~~~-g~~~d~~~i~----~-~~~V~~~h~~t~tG~~~p---i~ 156 (378)
T PRK03080 87 LLGARRVDHLA-WESFGSKWATDVVKQLKLEDPRVLEADY-GSLPDLSAVD----F-DRDVVFTWNGTTTGVRVP---VA 156 (378)
T ss_pred cCCCCcceEEE-eCHHHHHHHHHHHhhcCCCCceEeccCC-CCCCCHhhcC----C-CCCEEEEecCCccceecc---ch
Confidence 9875 445544 4444442 22 2356788 888887763 5567777643 2 567888899999999996 45
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcc-ccceeeeEEeChhhHHHHHHHh----
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSL-TGWKIGWAIAPPHLTWGVRQAH---- 340 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~-~G~R~G~~~~~~~~~~~l~~~~---- 340 (434)
+|++ +++|+++|+|.++.... ....+.. -.+++.|..|.++. +| +|+++.+++.++++....
T Consensus 157 ~I~~--~~~g~~~vVDa~qs~G~---~pidv~~------iD~~~~s~~K~l~~P~G--~g~l~v~~~~~~~~~p~~~~~~ 223 (378)
T PRK03080 157 RWIG--ADREGLTICDATSAAFA---LPLDWSK------LDVYTFSWQKVLGGEGG--HGMAILSPRAVERLESYTPARP 223 (378)
T ss_pred hhcc--ccCCCeEEEeccccccc---CCCCHHH------CcEEEEehhhhCCCCCc--eEEEEECHHHHHhhhcccCCCC
Confidence 5666 78899999999987643 2222222 24788899999863 55 899999998887765321
Q ss_pred ----------------hcc--c-cCCchHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHHHhhhCC-CEeec--C--
Q 013883 341 ----------------SFL--T-FATSTPMQWAATAALRAPET--YYEELKRDYSAKKAILVEGLNAVG-FKVFP--S-- 394 (434)
Q Consensus 341 ----------------~~~--~-~~~~~~~q~a~~~~L~~~~~--~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~--~-- 394 (434)
... + .+++.....++..+|+...+ .++++.++.+++.+++++.|++++ +.+.. +
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~ 303 (378)
T PRK03080 224 IPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPAT 303 (378)
T ss_pred CchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccc
Confidence 001 1 22333344444555554322 367778888889999999999886 45542 1
Q ss_pred CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 395 SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
.++..+.+.++......+.++..+|+++ ||.+..|.
T Consensus 304 ~s~~i~~~~~~~~~~~~~~~~~~~l~~~-~i~v~~g~ 339 (378)
T PRK03080 304 RSNTSVTLDFVDAQAAVDAAAVAKLLRE-NGAVDIEP 339 (378)
T ss_pred cCccEEEEEcCCchHHHHHHHHHHHHHc-CCeecccc
Confidence 1222333333210000134567777665 88887653
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-12 Score=130.01 Aligned_cols=297 Identities=19% Similarity=0.184 Sum_probs=164.4
Q ss_pred cCCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...|||..|. ..+. .+|.+.+++.+++++... |... .+.+..+++.+.+.... .+ .+++++++++|++
T Consensus 47 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~-~~~~---~~~~~~la~~l~~~~p~---~~-~v~f~~sGseA~e 118 (431)
T PRK06209 47 GNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGCN-FTRP---SAIELDAAESFLELIDG---AD-MVKFCKNGSDATS 118 (431)
T ss_pred CCEEEEccccccchhcCCCCHHHHHHHHHHHHhCcC-CCCC---CHHHHHHHHHHHHhCCc---cc-eEEEecCHHHHHH
Confidence 33578887663 2222 367899999999887532 3221 23333455555543321 24 7999999999999
Q ss_pred HHHHHccC-CC-CeEEEc-CCCchhHHHHHH-----HcCCE------EEEEEcCCCCCCCCHHHHHhhccc---CCcEEE
Q 013883 185 ATILGLIN-PG-DEVILF-APFYDSYEATLS-----MAGAK------IKCITLRPPDFAIPIEELKSTISK---NTRAIL 247 (434)
Q Consensus 185 ~~~~~l~~-~g-d~Vlv~-~p~y~~~~~~~~-----~~G~~------~~~v~~~~~~~~~d~~~l~~~i~~---~~~~i~ 247 (434)
.+++.... .| ..|+.. .-.|+++..... ..|.. +..+++ -|++.+++.+.. +..+|+
T Consensus 119 ~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~~~~~aavi 192 (431)
T PRK06209 119 AAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFRY------NDIASLEALFEDHPGRIACVI 192 (431)
T ss_pred HHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccCC------CCHHHHHHHHHhCCCCEEEEE
Confidence 99875431 23 345544 233332111100 01110 111111 278889988853 344555
Q ss_pred ecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccC-CCCCCCceEEEccCChhhccccceeeeE
Q 013883 248 MNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIAS-LPGMYERTVTMNSLGKTFSLTGWKIGWA 326 (434)
Q Consensus 248 ~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~-~~~~~~~~i~i~S~SK~~g~~G~R~G~~ 326 (434)
+ .|. .|...+.+.+++|.++|++||+++|+||++.++...+. .... +.-.+| +.+++|.+| .|+.+|++
T Consensus 193 ~-Epv--~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~--g~~~~~gv~PD----i~t~gK~lg-gG~p~~av 262 (431)
T PRK06209 193 L-EPA--TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMR--GAQKLYGIVPD----LSCFGKALG-NGFAVSAL 262 (431)
T ss_pred E-ccc--cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcc--hhhHHhCCCcc----eeeehhhhc-CCcccEEE
Confidence 5 442 35577888999999999999999999999987744321 1111 111233 577999999 78999999
Q ss_pred EeChhhHHH--HHHH---h---hccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEe-ecCC
Q 013883 327 IAPPHLTWG--VRQA---H---SFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKV-FPSS 395 (434)
Q Consensus 327 ~~~~~~~~~--l~~~---~---~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~ 395 (434)
++++++.+. +... . ...+++.++....++.+.|+.. ++.++++.+.-+..++.+.+...+.++.. +...
T Consensus 263 ~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~ 342 (431)
T PRK06209 263 AGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGVNEAAAEHGLQDHVRVS 342 (431)
T ss_pred EEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 999988875 2111 1 1235566667777777766642 22344444444444444444444455543 2223
Q ss_pred eeEEEeeec--CCCCCCC---HHHHHHHHHHhcCeEEEC
Q 013883 396 GTYFVVVDH--TPFGHET---DIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 396 ~~~~~~~~~--~~~~~~~---~~~~~~~Ll~~~GV~v~p 429 (434)
|.++.+.-+ .+.+... ...+.+++++ .||++.|
T Consensus 343 G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~p~ 380 (431)
T PRK06209 343 GRPCCLTYSTLDGNGQPSQAFRTLFLQETIR-RGVLMPS 380 (431)
T ss_pred cceEEEEEecCCcccCCcHHHHHHHHHHHHH-CCccccc
Confidence 333322211 1111111 1145566665 4998744
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-12 Score=127.29 Aligned_cols=309 Identities=13% Similarity=0.083 Sum_probs=168.3
Q ss_pred cCCeeEeCCCC--CCCC-CcHHHHH--HHHHHHHcCCCCCCCC-CCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 108 KHGAINLGQGF--PNFD-GPDFVKD--AAIQAIRDGKNQYARG-HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 108 ~~~~i~l~~g~--p~~~-~~~~v~~--~~~~~~~~~~~~Y~~~-~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
+...||+..|. ..+. .+|.+.+ ++.+++.+........ .-..+....+++.+.+..+. -..+ .++++++++|
T Consensus 44 G~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~p-~~~~-~v~f~~SGsE 121 (443)
T PRK08297 44 GRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLGD-PELP-HLFFVDGGAL 121 (443)
T ss_pred CCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcCC-CCCC-EEEEeCchHH
Confidence 34567776552 1222 3566777 7877775421111010 01123334455555443311 1124 7999999999
Q ss_pred HHHHHHHHcc----------C---C-CCeEEEcCCCchhHHHHHHHc-CCEE-E----------EEEcCCC-----CCC-
Q 013883 182 AIAATILGLI----------N---P-GDEVILFAPFYDSYEATLSMA-GAKI-K----------CITLRPP-----DFA- 229 (434)
Q Consensus 182 ai~~~~~~l~----------~---~-gd~Vlv~~p~y~~~~~~~~~~-G~~~-~----------~v~~~~~-----~~~- 229 (434)
|++.+++... . + ..+|+.....|++........ |... . .++.... ...
T Consensus 122 Ave~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (443)
T PRK08297 122 AVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDL 201 (443)
T ss_pred HHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCccccc
Confidence 9999988652 1 1 257999999998866544332 2110 0 0110000 000
Q ss_pred --------CCHHHHHhhcc---cCCcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCcccc
Q 013883 230 --------IPIEELKSTIS---KNTRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIA 297 (434)
Q Consensus 230 --------~d~~~l~~~i~---~~~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~ 297 (434)
-+++.+++.+. .++.+|++.......|. .++++.+++|.++|++||+++|.||++.+|...|......
T Consensus 202 ~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~ 281 (443)
T PRK08297 202 EEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQ 281 (443)
T ss_pred chhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHH
Confidence 02455566664 35566666544555566 4677889999999999999999999999986665544333
Q ss_pred CCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHH-----HhhccccCCchHHHHHHHHHHhCC--hHHHHHHH
Q 013883 298 SLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQ-----AHSFLTFATSTPMQWAATAALRAP--ETYYEELK 370 (434)
Q Consensus 298 ~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~-----~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~ 370 (434)
.+.-.+| +.+|+|.+++ .|.+ +..++.+.... .....+++.++.+..++.+.|+.. ++.+++..
T Consensus 282 ~~gv~PD----iv~~gK~l~~----~a~l-~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~ 352 (443)
T PRK08297 282 QLGVRPD----IVAFGKKTQV----CGIM-AGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAA 352 (443)
T ss_pred hcCCCCC----EEEecccccc----ccee-cchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3332344 3468998752 2444 33333221111 113457778888888888888742 22333333
Q ss_pred HHHHHHHHHHHHHhhhCC-CE-eecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 371 RDYSAKKAILVEGLNAVG-FK-VFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 371 ~~~~~~~~~l~~~L~~~g-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+.-+..++.+.+..++.+ +. .+...|. ++.+.+... .....++..|++ +||++.|+.
T Consensus 353 ~~g~~l~~~L~~l~~~~~~~~~~vrg~G~-~~~i~~~~~--~~~~~~~~~l~~-~Gvl~~~~~ 411 (443)
T PRK08297 353 RQGEYLLARLEELAAEFPAVVSNVRGRGL-MCAFDLPTT--ADRDEVIRRLWE-EGVLVLPCG 411 (443)
T ss_pred HHHHHHHHHHHHHHHHCCCcceeeeccce-EEEEEecCH--HHHHHHHHHHHH-CCEEEecCC
Confidence 333333333333333333 21 2344444 445555321 123467777775 599999854
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.1e-12 Score=120.52 Aligned_cols=270 Identities=16% Similarity=0.110 Sum_probs=183.5
Q ss_pred cCCeeEeCCCC-C---CCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 108 KHGAINLGQGF-P---NFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 108 ~~~~i~l~~g~-p---~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
+...||+..+. + +. ..|++.+++.+.+....+...+..-. +.. .+++.+.+..+- -+.+ .|++.+++++|+
T Consensus 55 g~EyiD~~ssw~~~~~Gh-anpev~ral~~q~~k~~hs~~~~~t~-eav-~l~~~l~~~~~~-~~~~-rvff~nsGTeAn 129 (433)
T KOG1401|consen 55 GKEYIDFTSSWAVTILGH-ANPEVARALAEQAKKLGHSSNGYFTL-EAV-ELEEVLSAVLGK-GSAE-RVFFCNSGTEAN 129 (433)
T ss_pred cceeeeeccceeccccCC-CCHHHHHHHHHHHhhheeccCccccH-HHH-HHHHHHHhcccC-CCcc-EEEEecCCcHHH
Confidence 34678887762 2 23 36778888877776643332222222 222 233333333222 2566 799999999999
Q ss_pred HHHHHHccC------CCC--eEEEcCCCchhHHHH-HHHcCCEEEEEEcCC--CC----CCCCHHHHHhhcccCC---cE
Q 013883 184 AATILGLIN------PGD--EVILFAPFYDSYEAT-LSMAGAKIKCITLRP--PD----FAIPIEELKSTISKNT---RA 245 (434)
Q Consensus 184 ~~~~~~l~~------~gd--~Vlv~~p~y~~~~~~-~~~~G~~~~~v~~~~--~~----~~~d~~~l~~~i~~~~---~~ 245 (434)
..++....+ +-+ .++....+|++.... +...+-.....|.++ ++ .--|...+++.++.+. .+
T Consensus 130 e~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~IaA 209 (433)
T KOG1401|consen 130 ETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIAA 209 (433)
T ss_pred HHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCCceEE
Confidence 998876532 112 388888888775433 222232222233221 11 1126888999887754 66
Q ss_pred EEecCCCCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceee
Q 013883 246 ILMNTPHNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIG 324 (434)
Q Consensus 246 i~~~~p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G 324 (434)
||+...+--.|..+ ++|.+..|..+|+++|+++|.||++.+|..-+..+....+...+| |.++.|.++ .|+.+|
T Consensus 210 VIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PD----I~t~aK~L~-gGlPig 284 (433)
T KOG1401|consen 210 VIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPD----ITTVAKPLG-GGLPIG 284 (433)
T ss_pred EEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCc----ceeehhhcc-CCceeE
Confidence 66655576777744 667799999999999999999999999887766555554544455 778999999 999999
Q ss_pred eEEeChhhHHHHHHHhh---ccccCCchHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHhhhC
Q 013883 325 WAIAPPHLTWGVRQAHS---FLTFATSTPMQWAATAALRA--PETYYEELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 325 ~~~~~~~~~~~l~~~~~---~~~~~~~~~~q~a~~~~L~~--~~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (434)
..+++.++.+.+..-.. ..+|+.++++..++...|+. ..++++++...-+..|+.+.+.+.+.
T Consensus 285 A~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~ 352 (433)
T KOG1401|consen 285 ATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKKT 352 (433)
T ss_pred EEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999988764433 56889999999999888876 25678888888888888888888775
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.1e-11 Score=118.88 Aligned_cols=247 Identities=13% Similarity=0.019 Sum_probs=169.2
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccC--CCCeEEEcCCCchhHHHHHHHcCCEEEEEEcC
Q 013883 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLIN--PGDEVILFAPFYDSYEATLSMAGAKIKCITLR 224 (434)
Q Consensus 147 G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~ 224 (434)
+..++++.+.+++.+..|.+-+.. .=++|+|+++++..++.+..+ +...|++++-+|.....++..+|++++.||.+
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~-~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d 208 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTL 208 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCC-eEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEeccC
Confidence 457899999999999988643221 347799999999888776643 33478889999999999999999999999997
Q ss_pred CCCCCCCHHHHHhhcccCC---cEEEecCCCCCcccCCCHHHHHHHHHHHHHcCc-----EEEEcCcCCccccCC-CCcc
Q 013883 225 PPDFAIPIEELKSTISKNT---RAILMNTPHNPTGKMFTREELNVIASLCIENDV-----LVFSDEVYDKLAFEM-DHIS 295 (434)
Q Consensus 225 ~~~~~~d~~~l~~~i~~~~---~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~-----~iI~Deay~~~~~~~-~~~~ 295 (434)
+ ++.+|++.|+++|.+++ .+|+.+...-++|.+= ++++|.++|+++|+ |+.+|.||+++..-- +...
T Consensus 209 ~-~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiD---pi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~ 284 (470)
T PLN02263 209 V-SGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVD---DLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAP 284 (470)
T ss_pred C-CCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCC---CHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccccc
Confidence 4 78999999999997643 3444566788999875 46778888999986 999999998875410 1111
Q ss_pred ccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcc-----ccCCchHH--HHHHHHHHhC-ChHHHH
Q 013883 296 IASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL-----TFATSTPM--QWAATAALRA-PETYYE 367 (434)
Q Consensus 296 ~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~-----~~~~~~~~--q~a~~~~L~~-~~~~~~ 367 (434)
...+. ..-.=+..+..|.++ .-+..|++..+...++.+.....+. +...+... ...+-..|+. +.+.++
T Consensus 285 ~~df~--~~vDSIsvD~HK~l~-~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~ 361 (470)
T PLN02263 285 KVTFK--KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQ 361 (470)
T ss_pred ccCCC--cCccEEEECCccccC-CCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHH
Confidence 11111 112224557889887 5678999998866543332111111 11112111 2222233333 456778
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCEee-cCCeeEEEe
Q 013883 368 ELKRDYSAKKAILVEGLNAVGFKVF-PSSGTYFVV 401 (434)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~ 401 (434)
+..++..++.+++.+.|++.|+... .|.....+|
T Consensus 362 ~~i~~~~~~A~~l~~~l~~~g~~~~~~p~s~~V~f 396 (470)
T PLN02263 362 KEVQKCLRNAHYLKDRLREAGISAMLNELSSTVVF 396 (470)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEeCCCceEEEE
Confidence 8888888999999999999887654 455554444
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-11 Score=132.35 Aligned_cols=311 Identities=14% Similarity=0.050 Sum_probs=184.1
Q ss_pred CeeEeCCC--CCCCC--CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 110 GAINLGQG--FPNFD--GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 110 ~~i~l~~g--~p~~~--~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
..+|+..| .-.+. ..|.+.+++.+++.+..+...+... .+....+++.|.+..+.. ..+ .+++++++++|++.
T Consensus 366 ~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~hv~~~~~~-hepa~~LAe~L~~~~~~~-~l~-rVffs~sGSeAvE~ 442 (817)
T PLN02974 366 QQFDACASWWTQGPDPTLQPELARAVAYAAGRYGHVMFPENV-HEPALRAAELLLGGPGKG-WAS-RVFFSDNGSTAIEV 442 (817)
T ss_pred eEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCCccccCccC-CHHHHHHHHHHHhccCCC-CCC-EEEECCchHHHHHH
Confidence 35666554 22233 4788999999988774332222222 344555777776422211 123 79999999999998
Q ss_pred HHHHccC---------------------CCCeEEEcCCCchhHHHHHHHcCCE---------E------EEE--EcC---
Q 013883 186 TILGLIN---------------------PGDEVILFAPFYDSYEATLSMAGAK---------I------KCI--TLR--- 224 (434)
Q Consensus 186 ~~~~l~~---------------------~gd~Vlv~~p~y~~~~~~~~~~G~~---------~------~~v--~~~--- 224 (434)
+++...+ ...+|+.....|++.......++.. . ..+ |..
T Consensus 443 AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~ 522 (817)
T PLN02974 443 ALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMR 522 (817)
T ss_pred HHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccc
Confidence 8775521 1246888888888743332222210 0 001 100
Q ss_pred --------CCC-----------CC-----CC------------HHHHHhhcc--------cCCcEEEecCC-CCCcccCC
Q 013883 225 --------PPD-----------FA-----IP------------IEELKSTIS--------KNTRAILMNTP-HNPTGKMF 259 (434)
Q Consensus 225 --------~~~-----------~~-----~d------------~~~l~~~i~--------~~~~~i~~~~p-~NPTG~~~ 259 (434)
+.. +. .| .+.+++.+. ++..+|++... +.-.|+++
T Consensus 523 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~ 602 (817)
T PLN02974 523 NGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLL 602 (817)
T ss_pred cccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCccc
Confidence 000 00 00 244555553 13455555442 57778865
Q ss_pred -CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccc-ceeeeEEeChhhHHHHH
Q 013883 260 -TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTG-WKIGWAIAPPHLTWGVR 337 (434)
Q Consensus 260 -~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~ 337 (434)
+++.+++|.++|++||+++|+||++.+|...|.......+.-.+| +.+++|.++ .| +.+|.+++++++.+.+.
T Consensus 603 ~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PD----Ii~~gKgLt-gG~~Plaa~l~~~~I~~~f~ 677 (817)
T PLN02974 603 IDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPD----IACYAKLLT-GGLVPLAATLATEEVFEAFR 677 (817)
T ss_pred CCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCC----EEeeccccc-CCCCccEEEEEcHHHHHhhc
Confidence 677799999999999999999999999987776555544443445 667999998 89 59999999999988774
Q ss_pred H------HhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHh----hhCC-CEeecCCeeEEEeeec
Q 013883 338 Q------AHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGL----NAVG-FKVFPSSGTYFVVVDH 404 (434)
Q Consensus 338 ~------~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L----~~~g-~~~~~~~~~~~~~~~~ 404 (434)
. .....+|+.++.+.+++.+.|+.. ++..+++.+..++..+.+.+.| .+.. +.-+... |+++-+.+
T Consensus 678 ~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~-Gl~~~iel 756 (817)
T PLN02974 678 GPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSL-GTVLALEL 756 (817)
T ss_pred cccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEee-eeEEEEEE
Confidence 2 113357888999988888877642 2223344444444444444444 3332 2222333 44444544
Q ss_pred CCCCC------CCHHHHHHHHHHhcCeEEEC
Q 013883 405 TPFGH------ETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 405 ~~~~~------~~~~~~~~~Ll~~~GV~v~p 429 (434)
..... .-...+.++++.+.||+++|
T Consensus 757 ~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~ 787 (817)
T PLN02974 757 DAEGSGSGYSSLYARSVVRRLRREDGIYARP 787 (817)
T ss_pred ecCCcccccchHHHHHHHHHHHHhCCEEEEe
Confidence 32110 01235666676356999998
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-11 Score=130.44 Aligned_cols=271 Identities=14% Similarity=0.110 Sum_probs=175.5
Q ss_pred CCCCCCC---CCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc--------CCCCeEEEcCCCchhH
Q 013883 139 KNQYARG---HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI--------NPGDEVILFAPFYDSY 207 (434)
Q Consensus 139 ~~~Y~~~---~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~--------~~gd~Vlv~~p~y~~~ 207 (434)
.+.|.|. +|..++...+.+++.+..|.+ .. .+. .+|+..+-...+.++. ...++|+++.-.++..
T Consensus 516 ~hPyqPe~~sqG~lq~i~elq~~l~eltGmd--~~-Sl~-p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtn 591 (939)
T TIGR00461 516 IHPFQPSNQVEGYQELIAQLEKWLCSITGFD--AI-SLQ-PNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTN 591 (939)
T ss_pred cCCCCchHHhHHHHHHHHHHHHHHHHHHCCC--Cc-ccC-CchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcC
Confidence 3456554 567788888888888888875 22 233 3444444433333322 1235788998888666
Q ss_pred HHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc---CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcC
Q 013883 208 EATLSMAGAKIKCITLRPPDFAIPIEELKSTISK---NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVY 284 (434)
Q Consensus 208 ~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~---~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay 284 (434)
...+...|++++.++.+ +++.+|+++|++++++ ++++|++++|+| +|..-+ ++++|+++|+++|.++++|.++
T Consensus 592 Pasa~~~G~~Vv~V~~d-~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VDgAq 667 (939)
T TIGR00461 592 PASAAMAGMQVVPVNCD-QDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLDGAN 667 (939)
T ss_pred HHHHHHCCCEEEEeccC-CCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEEecC
Confidence 66688899999999987 4789999999999974 889999999999 787653 3888999999999999999998
Q ss_pred CccccCCCCccccCCCCCCCceEEEccCChhhc----cccceeeeEEeChhhHHHHHH--H-------------hhccc-
Q 013883 285 DKLAFEMDHISIASLPGMYERTVTMNSLGKTFS----LTGWKIGWAIAPPHLTWGVRQ--A-------------HSFLT- 344 (434)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g----~~G~R~G~~~~~~~~~~~l~~--~-------------~~~~~- 344 (434)
..-.. ...-++..+-.++..|..|.|+ ..|.-+|++.+.+++...+-. + .....
T Consensus 668 ~~al~------~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~ 741 (939)
T TIGR00461 668 MNAQV------GLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAA 741 (939)
T ss_pred hhhCC------CCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCcccccccccc
Confidence 54111 1111223345688888899664 356668999988765543310 0 00000
Q ss_pred cCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecC-CeeE-E--EeeecCCC----CCCCHHHH
Q 013883 345 FATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFPS-SGTY-F--VVVDHTPF----GHETDIAF 415 (434)
Q Consensus 345 ~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~-~--~~~~~~~~----~~~~~~~~ 415 (434)
...+......+..+|.. +.+.++++.+....+.+++.+.|++ ++++.-+ ..+. + +.+++.+. +. +..++
T Consensus 742 ~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~~~~~~~g~-~~~dI 819 (939)
T TIGR00461 742 PYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD-HYPILFVGTLKHVAHECILDLRPLKAKTGI-EAIDV 819 (939)
T ss_pred ccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc-cCcccccCCCCceeEEEEEeccchhhhcCC-CHHHH
Confidence 01111122333333333 4567888888888899999999987 4554322 2222 2 23444422 22 57889
Q ss_pred HHHHHHhcCeE
Q 013883 416 CEYLIKEVGVV 426 (434)
Q Consensus 416 ~~~Ll~~~GV~ 426 (434)
+++|++. |+.
T Consensus 820 akrL~d~-G~h 829 (939)
T TIGR00461 820 AKRLQDY-GFH 829 (939)
T ss_pred HHHHHhC-Cee
Confidence 9999865 886
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.5e-12 Score=125.73 Aligned_cols=308 Identities=13% Similarity=0.099 Sum_probs=165.9
Q ss_pred CCeeEeCCCCC--CCC-CcHHHH--HHHHHHHHcCCCCC-CC-CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 109 HGAINLGQGFP--NFD-GPDFVK--DAAIQAIRDGKNQY-AR-GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 109 ~~~i~l~~g~p--~~~-~~~~v~--~~~~~~~~~~~~~Y-~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
...|||..|.- .+. .+|.+. +++.+++.+....+ .. .....+ ...+++.+.+..+. -..+ .+++++++++
T Consensus 38 ~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~-~~~~-~v~f~~sGsE 114 (431)
T TIGR03251 38 RRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVA-MARFVDTFARVLGD-PALP-HLFFIEGGAL 114 (431)
T ss_pred CChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCCCCHH-HHHHHHHHHHhcCC-CCcC-EEEEeCCcHH
Confidence 35566655522 122 245566 78888776532111 11 112222 33444444433211 1224 7999999999
Q ss_pred HHHHHHHHccC--------------CCCeEEEcCCCchhHHHHHHHc-CCE-EEE------------EE-----cCCCCC
Q 013883 182 AIAATILGLIN--------------PGDEVILFAPFYDSYEATLSMA-GAK-IKC------------IT-----LRPPDF 228 (434)
Q Consensus 182 ai~~~~~~l~~--------------~gd~Vlv~~p~y~~~~~~~~~~-G~~-~~~------------v~-----~~~~~~ 228 (434)
|++.+++.... .+.+|+...-.|++........ |.. ... .| ++.+..
T Consensus 115 Ave~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 194 (431)
T TIGR03251 115 AVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNL 194 (431)
T ss_pred HHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCcccccc
Confidence 99999876521 1367999998888865443322 211 000 11 000000
Q ss_pred C-------CCHHHHHhhcc---cCCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCcccc
Q 013883 229 A-------IPIEELKSTIS---KNTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIA 297 (434)
Q Consensus 229 ~-------~d~~~l~~~i~---~~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~ 297 (434)
. -+++.+++.+. .++.++++.....-.|.. ++++.+++|.++|++||+++|+||++.+|...|......
T Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~ 274 (431)
T TIGR03251 195 DQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQ 274 (431)
T ss_pred chhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHH
Confidence 0 12444555553 356777776556667775 577889999999999999999999999887665443333
Q ss_pred CCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHH-----HhhccccCCchHHHHHHHHHHhCC--hHHHHHHH
Q 013883 298 SLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQ-----AHSFLTFATSTPMQWAATAALRAP--ETYYEELK 370 (434)
Q Consensus 298 ~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~-----~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~ 370 (434)
.+.-.+| +-+++|.+. . .|++... ++.+.... .....+++.++....++.+.|+.. ++.+++++
T Consensus 275 ~~gv~PD----i~~~gK~~~--~--~g~~~~~-~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~ 345 (431)
T TIGR03251 275 QLGVQPD----IVAFGKKTQ--V--CGIMAGR-RVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNAR 345 (431)
T ss_pred hcCCCCC----EEEecccCc--c--ceEEecc-hHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3322334 335788862 2 3555443 32111110 112346777888888888877752 22233444
Q ss_pred HHHHHHHHHHHHHhhhCC-CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 371 RDYSAKKAILVEGLNAVG-FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 371 ~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+.-+..++.|.+..++.+ +......-|.++.+.+.. ......+.+.|++ +||++.|..
T Consensus 346 ~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~--~~~~~~~~~~l~~-~Gvl~~~~g 404 (431)
T TIGR03251 346 VQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPS--TADRDEVIRQLYR-EGVLLLGCG 404 (431)
T ss_pred HHHHHHHHHHHHHHHhCccceecccccceeEEEEeCC--HHHHHHHHHHHHh-CCeEEecCC
Confidence 444444444444333333 322222224444555522 1123457777765 599998853
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-12 Score=122.91 Aligned_cols=261 Identities=13% Similarity=0.171 Sum_probs=175.1
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC
Q 013883 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP 226 (434)
Q Consensus 147 G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~ 226 (434)
|..++.+.+.++..++.|. ++ .+++.-| .......+..++.||.-|+-..-.+......++..|+.++.+..+
T Consensus 179 G~~~~hkelE~l~A~f~g~---e~-a~vF~mG-f~TNs~~~p~l~~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHN-- 251 (519)
T KOG1357|consen 179 GTTEEHKELEELVARFLGV---ED-AIVFSMG-FATNSMNIPSLLGKGSLIISDELNHASLITGARLSGATTRVFRHN-- 251 (519)
T ss_pred ccHHHHHHHHHHHHHhcCC---cc-eEEEecc-ccccccCcceeecCCcceeeccccchheeccccccCceEEEEecC--
Confidence 4444555555555544443 34 6888777 666666788899999999999999999999999999999988876
Q ss_pred CCCCCHHHHHhhccc-------CC-----cEEE-ecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCC
Q 013883 227 DFAIPIEELKSTISK-------NT-----RAIL-MNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH 293 (434)
Q Consensus 227 ~~~~d~~~l~~~i~~-------~~-----~~i~-~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~ 293 (434)
|..+||+.+++ ++ |.++ +..-...-|.+. .+.+++++++++..+++.||+++..+.+...
T Consensus 252 ----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv---~Lp~vvalkkkykayl~lDEAHSiGA~g~tG 324 (519)
T KOG1357|consen 252 ----DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIV---DLPEVVALKKKYKAYLYLDEAHSIGAMGATG 324 (519)
T ss_pred ----CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeec---ccHHHHHhhccccEEEEeeccccccccCCCC
Confidence 46666665532 11 3333 334455566665 5778999999999999999999987665433
Q ss_pred ccccCC--CCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcccc---CCchHHHHHHHHHHhC-----Ch
Q 013883 294 ISIASL--PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTF---ATSTPMQWAATAALRA-----PE 363 (434)
Q Consensus 294 ~~~~~~--~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~---~~~~~~q~a~~~~L~~-----~~ 363 (434)
...-.+ .+..+..|++++|.|.+|..| ||+.+++++++.++.......+ -+++..|.. ...|+. ..
T Consensus 325 rgvce~~g~d~~dvDImMGtftKSfga~G---Gyiagsk~lid~lrt~s~~~~yat~~sppvaqq~-~ssl~~i~G~dgt 400 (519)
T KOG1357|consen 325 RGVCEYFGVDPEDVDIMMGTFTKSFGAAG---GYIAGSKELIDYLRTPSPSALYATSLSPPVAQQI-LTSVKHIMGEDGT 400 (519)
T ss_pred cceeeccCCCchhheeecceehhhccccc---ceecCcHHHHhhhccCCCceeecccCChHHHHHH-HHHHHhhcCCCcc
Confidence 333333 223456788999999999777 9999999999988765443322 233333433 333332 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 364 TYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
+..++..+++++++.+++..|++.|+-++.......+-+-+-... .-.++.+.|+++ +|.++
T Consensus 401 ~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~~dSpVvplll~~~~--k~~~f~r~~l~~-nigvV 462 (519)
T KOG1357|consen 401 NRGRQKIERLAENSRYFRWELQKMGFIVYGNNDSPVVPLLLYGPA--KIVAFSREMLER-NIGVV 462 (519)
T ss_pred cHHHHHHHHHHhhhHHHHHhhhcCcEEEecCCCCCcceeeecCcc--cccHHHHHHHhc-CceEE
Confidence 456777889999999999999999999887665533222211111 233677677765 55443
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-11 Score=115.20 Aligned_cols=294 Identities=18% Similarity=0.181 Sum_probs=181.5
Q ss_pred cHHHHHHHHHHHHcC---CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc--CCCCeEE
Q 013883 124 PDFVKDAAIQAIRDG---KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI--NPGDEVI 198 (434)
Q Consensus 124 ~~~v~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vl 198 (434)
.|.+.+++.+++..- ...|... -+.+|-+++++.+- -+-+ .++++|+++||.+++++... ...-.++
T Consensus 68 hP~v~~a~~kQl~~l~H~t~~~~~~-pi~~~Ae~L~s~~P------~~l~-~vfF~nsGsEANelal~mar~Yt~~~diI 139 (442)
T KOG1404|consen 68 HPDVVAAAVKQLKKLYHTTSGYLNP-PIHDLAEALVSKLP------GDLK-VVFFVNSGSEANELALKMARLYTGNLDII 139 (442)
T ss_pred ChHHHHHHHHhhhhhEEeeccccCC-cHHHHHHHHHHhCC------CCce-EEEEecCCchHHHHHHHHHHHhcCCceEE
Confidence 345777887777542 2344443 24566666666553 1123 68999999999999987653 2223455
Q ss_pred EcCCCchhHH-HHHHHcCCEEEEEEcCC----------CC-----CCCC---------HHHHHhhc---ccCCcEEEecC
Q 013883 199 LFAPFYDSYE-ATLSMAGAKIKCITLRP----------PD-----FAIP---------IEELKSTI---SKNTRAILMNT 250 (434)
Q Consensus 199 v~~p~y~~~~-~~~~~~G~~~~~v~~~~----------~~-----~~~d---------~~~l~~~i---~~~~~~i~~~~ 250 (434)
-...+|++.. ..+..-|......++.. ++ ++=+ .+.+++.+ .+++.+-++..
T Consensus 140 a~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaE 219 (442)
T KOG1404|consen 140 ARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAE 219 (442)
T ss_pred EeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEee
Confidence 5566666543 33333443332222211 00 0000 13333333 23455555554
Q ss_pred C-CCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEe
Q 013883 251 P-HNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA 328 (434)
Q Consensus 251 p-~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~ 328 (434)
+ +.--|+ .+++-.+++..++|+++|.+.|.||++.+|...|..+.+.+..-.+ -|.|++|.+| .|..+|.++.
T Consensus 220 tIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~P----DIvTmAKgiG-nG~Pl~AVvt 294 (442)
T KOG1404|consen 220 TIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVP----DIVTMAKGIG-NGFPLGAVVT 294 (442)
T ss_pred hhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCc----cHHHHHhhcc-CCCcceeeec
Confidence 4 555565 4566779999999999999999999999998887555554433333 4889999999 9999999999
Q ss_pred ChhhHHHHHHHh-hccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC--CCEee--cCCeeEEEeee
Q 013883 329 PPHLTWGVRQAH-SFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV--GFKVF--PSSGTYFVVVD 403 (434)
Q Consensus 329 ~~~~~~~l~~~~-~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~~~~~~ 403 (434)
.+++.+-+.+.. .+.+++.++.+..++.++|+-.+ -+++.++..+.-.+|.+.|.++ +.+.+ ...-|.++=+.
T Consensus 295 t~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vik--ee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE 372 (442)
T KOG1404|consen 295 TPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIK--EENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVE 372 (442)
T ss_pred CHHHHHHHHhccccccccCCCchhHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEE
Confidence 999999887766 67789999999999988888632 2445566666677777777664 23332 22223333332
Q ss_pred cC-----CCC--CCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 404 HT-----PFG--HETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 404 ~~-----~~~--~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+. +.. ......+.++. ++.||.|--|..+
T Consensus 373 ~V~dk~~~~pp~~~~~~~i~~~c-ke~Gvlvg~g~i~ 408 (442)
T KOG1404|consen 373 LVSDKSEPKPPATAEGAVIGEQC-KELGVLVGKGGIH 408 (442)
T ss_pred EecccCCCCCcchHHHHHHHHHH-HHhCeeeeccccc
Confidence 21 111 11122344455 5679999766654
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.4e-12 Score=118.38 Aligned_cols=155 Identities=20% Similarity=0.278 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhH----HHHHHHcCCEEEEEEcC
Q 013883 149 PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSY----EATLSMAGAKIKCITLR 224 (434)
Q Consensus 149 ~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~----~~~~~~~G~~~~~v~~~ 224 (434)
..|.+.++.+-+. . .-+.+.+++.|+..++..++++||.|+-.+--|.+. ...++.+|+++..|.-+
T Consensus 65 ~vlE~RiAaLEGG---~------aa~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~ 135 (426)
T COG2873 65 DVLEERIAALEGG---V------AALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPD 135 (426)
T ss_pred HHHHHHHHHhhcc---h------hhhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCC
Confidence 4677777775542 1 234456669999999999999999999888877764 44567899999998655
Q ss_pred CCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCC
Q 013883 225 PPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYE 304 (434)
Q Consensus 225 ~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~ 304 (434)
|++.++++++++||+|++.+-.||-+.++ ++++|+++|++|++++|+|.....- .-++.+ ..+
T Consensus 136 ------d~~~~~~aI~~nTkavf~EtigNP~~~v~---Die~ia~iAh~~gvpliVDNT~atp------yl~rP~--~hG 198 (426)
T COG2873 136 ------DPENFEAAIDENTKAVFAETIGNPGLDVL---DIEAIAEIAHRHGVPLIVDNTFATP------YLCRPI--EHG 198 (426)
T ss_pred ------CHHHHHHHhCcccceEEEEeccCCCcccc---CHHHHHHHHHHcCCcEEEecCCCcc------eecchh--hcC
Confidence 68999999999999999999999999998 6778999999999999999987641 112222 245
Q ss_pred ceEEEccCChhhccccceeeeEEeC
Q 013883 305 RTVTMNSLGKTFSLTGWKIGWAIAP 329 (434)
Q Consensus 305 ~~i~i~S~SK~~g~~G~R~G~~~~~ 329 (434)
-.|++.|.+|.+|-.|--+|-++.+
T Consensus 199 ADIVvHS~TK~igGhGt~iGG~iVD 223 (426)
T COG2873 199 ADIVVHSATKYIGGHGTAIGGVIVD 223 (426)
T ss_pred CCEEEEeecccccCCccccceEEEe
Confidence 5689999999998788888877753
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-11 Score=118.87 Aligned_cols=294 Identities=17% Similarity=0.118 Sum_probs=186.0
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
-.|||=+..-.-.+.+..++++. .+...|........|.+.++++++ .+ .++.+..+..+-..++..
T Consensus 42 V~IDLrSDTgT~apS~~m~aAM~----~GDD~Y~gdpSv~~Lee~vael~G--------~E-~alpthqGRgaE~Il~~~ 108 (467)
T TIGR02617 42 VFIDLLTDSGTGAVTQSMQAAMM----RGDEAYSGSRSYYALAESVKNIFG--------YQ-YTIPTHQGRGAEQIYIPV 108 (467)
T ss_pred eEEECccCCCCCCCCHHHHHHHH----cCCcccccCchHHHHHHHHHHHhC--------Cc-eEEECCCCchHHHHHHHh
Confidence 45777544322223444554443 366678887778899999999987 44 677787778898888999
Q ss_pred ccC-CCCeEEEcCC-------Cchh-HHHHHHHcCCEEEEEEcC--------C-CCCCCCHHHHHhhccc----CCcEEE
Q 013883 190 LIN-PGDEVILFAP-------FYDS-YEATLSMAGAKIKCITLR--------P-PDFAIPIEELKSTISK----NTRAIL 247 (434)
Q Consensus 190 l~~-~gd~Vlv~~p-------~y~~-~~~~~~~~G~~~~~v~~~--------~-~~~~~d~~~l~~~i~~----~~~~i~ 247 (434)
+++ |||++.+..+ .++. ....+...|+.++.++.+ . .++.+|++.++++|++ +.-.+.
T Consensus 109 ~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~ 188 (467)
T TIGR02617 109 LIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIV 188 (467)
T ss_pred hcccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeee
Confidence 988 7887775443 3332 345677889888876432 1 2478999999999985 222222
Q ss_pred ecCCCC-CcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCcc-c-c------CCCCccccCCC----CCCCceEEEccCCh
Q 013883 248 MNTPHN-PTGKMFTREELNVIASLCIENDVLVFSDEVYDKL-A-F------EMDHISIASLP----GMYERTVTMNSLGK 314 (434)
Q Consensus 248 ~~~p~N-PTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~-~-~------~~~~~~~~~~~----~~~~~~i~i~S~SK 314 (434)
..--+| --|.++|.+.++++.++|++||+.++.|.+--.- . | .-...++..+. ... ..+..|+||
T Consensus 189 ~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~a--Dsvt~slsK 266 (467)
T TIGR02617 189 ATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYA--DMLAMSAKK 266 (467)
T ss_pred eeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccC--CEEEEEcCC
Confidence 111133 3588999999999999999999999999863220 1 1 00122222221 111 256679999
Q ss_pred hhccc-cceeeeEEeChh-hHHHHHHHhh-------cccc-CCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHH
Q 013883 315 TFSLT-GWKIGWAIAPPH-LTWGVRQAHS-------FLTF-ATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVE 382 (434)
Q Consensus 315 ~~g~~-G~R~G~~~~~~~-~~~~l~~~~~-------~~~~-~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~ 382 (434)
.+|.| | |+++++++ +.+.+++.+. +.++ +.+.--..+++.-|.+. ++|++.. ....++|.+
T Consensus 267 glgApvG---g~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~r----i~qv~yl~~ 339 (467)
T TIGR02617 267 DAMVPMG---GLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYR----INQVQYLVN 339 (467)
T ss_pred CCCCccc---ceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHH----HHHHHHHHH
Confidence 99866 4 67777755 2222333222 1223 23333455666666653 3444433 334677888
Q ss_pred HhhhCCCEeecCCeeEEEeeecCC------CCCCCHHHHHHHHHHhcCeE
Q 013883 383 GLNAVGFKVFPSSGTYFVVVDHTP------FGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 383 ~L~~~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~Ll~~~GV~ 426 (434)
.|.+.|+++.. .||.-++++-.. ...-.+..++..|..+.||-
T Consensus 340 ~L~~~Gvpi~~-~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR 388 (467)
T TIGR02617 340 GLEEIGVVCQQ-AGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIR 388 (467)
T ss_pred HHHhCCCcEEe-cCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcc
Confidence 99999999988 899888886322 11224667888888888885
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-11 Score=128.49 Aligned_cols=221 Identities=12% Similarity=0.089 Sum_probs=140.5
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCC
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD 227 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~ 227 (434)
+.+..+.+|+.++ .++..+++||++.++..++.+++.+||.|+++..+|.+..+.+.+.|+.++.++...+.
T Consensus 197 i~eAe~~AA~~fg--------Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~rn~ 268 (714)
T PRK15400 197 HKEAEEYIARVFN--------ADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTRNA 268 (714)
T ss_pred HHHHHHHHHHHhC--------CCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccccc
Confidence 4456666666655 44478999999999999999999999999999999999999999999999998654323
Q ss_pred C----CCC-----HHHHHhhcccC--Cc---EEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccc-cCCC
Q 013883 228 F----AIP-----IEELKSTISKN--TR---AILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLA-FEMD 292 (434)
Q Consensus 228 ~----~~d-----~~~l~~~i~~~--~~---~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~-~~~~ 292 (434)
+ +++ .+.+++++... .+ ++++++| +-.|++++ +++|+++|+.++ |++||||.... |...
T Consensus 269 ~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd---~~~I~~~~~~~~--ilvDEAwgah~~F~p~ 342 (714)
T PRK15400 269 YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTNFSPI 342 (714)
T ss_pred cCCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecC---HHHHHHHhCCCC--EEEEccchhhhccCcc
Confidence 2 345 78999988652 23 6777777 56799985 566777787777 78999997543 4332
Q ss_pred CccccCC-CCC--CCceEEEccCChhhccccce-eeeEEeChhhH-HHHHHHhhccccCCchHH----HHHHHHHHhCCh
Q 013883 293 HISIASL-PGM--YERTVTMNSLGKTFSLTGWK-IGWAIAPPHLT-WGVRQAHSFLTFATSTPM----QWAATAALRAPE 363 (434)
Q Consensus 293 ~~~~~~~-~~~--~~~~i~i~S~SK~~g~~G~R-~G~~~~~~~~~-~~l~~~~~~~~~~~~~~~----q~a~~~~L~~~~ 363 (434)
.+....+ .+. .+.+++++|..|.++ |+. .++++.+..+- ++++........+.|... ..++...++..
T Consensus 343 ~~~~sam~~ga~~~~~i~vtQStHKtL~--alTQaS~LHvkg~vd~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m~~~- 419 (714)
T PRK15400 343 YEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGN- 419 (714)
T ss_pred cCCcChhhcCCCCCCceEEEEchhhccc--chhHHhHHHHcCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhh-
Confidence 1111111 111 245689999999984 443 45666644322 234433332333334333 23333444421
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 013883 364 TYYEELKRDYSAKKAILVEGLNA 386 (434)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~L~~ 386 (434)
.-+++.++..++...+++.|.+
T Consensus 420 -~G~~l~~~~i~~a~~~R~~l~~ 441 (714)
T PRK15400 420 -AGKRLINGSIERAIKFRKEIKR 441 (714)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHh
Confidence 1223334444444445555544
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-11 Score=126.91 Aligned_cols=169 Identities=17% Similarity=0.159 Sum_probs=120.4
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH-HHHcCCEEEEEEcCCC
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT-LSMAGAKIKCITLRPP 226 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~-~~~~G~~~~~v~~~~~ 226 (434)
+.+..+.+|+.++ .++..+++||++.++..++.+++.+||.|+++..+|.+..+. +.+.|+.++++....+
T Consensus 176 i~eAq~~AA~~fg--------Ad~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n 247 (720)
T PRK13578 176 AKDAQKHAAKVFN--------ADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPVYLETARN 247 (720)
T ss_pred HHHHHHHHHHHhC--------CCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHcCCeEEEeecccc
Confidence 4455666666655 344789999999999999999999999999999999998885 8999999999865432
Q ss_pred CC----CCCHHH-----HHhhcccC----------CcEEEecCCCCCcccCCCHHHHHHHHHH-HHHcCcEEEEcCcCCc
Q 013883 227 DF----AIPIEE-----LKSTISKN----------TRAILMNTPHNPTGKMFTREELNVIASL-CIENDVLVFSDEVYDK 286 (434)
Q Consensus 227 ~~----~~d~~~-----l~~~i~~~----------~~~i~~~~p~NPTG~~~~~e~l~~i~~l-a~~~~~~iI~Deay~~ 286 (434)
.+ +++.+. +++++... .+++++++| +-.|+++ ++++|+++ ++.++ .|++||||..
T Consensus 248 ~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYdG~~y---di~~I~~~~~h~~~-~llvDEAhga 322 (720)
T PRK13578 248 PFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYDGTIY---NARQVVDKIGHLCD-YILFDSAWVG 322 (720)
T ss_pred ccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCcceee---cHHHHHHHhhccCC-cEEEeCcchh
Confidence 23 345444 88777653 478888777 4469998 46667777 67778 9999999975
Q ss_pred cc-cCCC---Cccc-cCCCCCCCceEEEccCChhhccccc-eeeeEEeChh
Q 013883 287 LA-FEMD---HISI-ASLPGMYERTVTMNSLGKTFSLTGW-KIGWAIAPPH 331 (434)
Q Consensus 287 ~~-~~~~---~~~~-~~~~~~~~~~i~i~S~SK~~g~~G~-R~G~~~~~~~ 331 (434)
.. |... .+.. .....+..-+++++|..|.++ ++ -.++++.+.+
T Consensus 323 h~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~--alTQaS~LHvk~~ 371 (720)
T PRK13578 323 YEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQA--GFSQTSQIHKKDN 371 (720)
T ss_pred hhccCcccccCChhhhhcCCCCCCeEEEEChhhcch--hhhhHhhhhcCCc
Confidence 43 4331 1111 111112234689999999984 44 3568877543
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-11 Score=124.68 Aligned_cols=304 Identities=13% Similarity=0.096 Sum_probs=167.2
Q ss_pred cCCeeEeCCCCCCC--C-CcHHHHHHHHHH-HHcCCCCCCCCCCcHHHHHHHHHHHH----hhcCCCCCCCCcEEEcCCh
Q 013883 108 KHGAINLGQGFPNF--D-GPDFVKDAAIQA-IRDGKNQYARGHGVPEFNSAIASRFK----KDSGLEVDPEKEVTVTSGC 179 (434)
Q Consensus 108 ~~~~i~l~~g~p~~--~-~~~~v~~~~~~~-~~~~~~~Y~~~~G~~~lr~~ia~~l~----~~~g~~~~~~~~i~~t~G~ 179 (434)
+...||+..|.-.. . .+|.+.+++.++ ....... .+.... +....+++.+. +.... +-+ .+++++++
T Consensus 57 G~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~~-~~~~~~-~~~~~la~~l~~~l~~~~p~--~~~-~v~f~~SG 131 (464)
T TIGR00699 57 GNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLIN-RPALGN-FPSKDWAKILKEGILKVAPK--GQD-QVWTGMSG 131 (464)
T ss_pred CCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhcc-cccCCc-HHHHHHHHHHHHhHHhhCCC--CcC-EEEEeCCc
Confidence 34578887763322 2 467788888874 2322111 111121 23344455443 22221 124 79999999
Q ss_pred HHHHHHHHHHccC--------------------------CC---CeEEEcCCCchhHHHHHHH-cCCE-----------E
Q 013883 180 TEAIAATILGLIN--------------------------PG---DEVILFAPFYDSYEATLSM-AGAK-----------I 218 (434)
Q Consensus 180 ~~ai~~~~~~l~~--------------------------~g---d~Vlv~~p~y~~~~~~~~~-~G~~-----------~ 218 (434)
++|++.+++.... +| .+|+....+|++....... .|.. +
T Consensus 132 sEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~ 211 (464)
T TIGR00699 132 SDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDW 211 (464)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCc
Confidence 9999999876521 11 2699999999886544332 2211 1
Q ss_pred EEEEcCCCC--C-----------CCCHHHHHhhccc---CCcEEEecCCCCCcccCC-CHHHHHHHHHHHHHcCcEEEEc
Q 013883 219 KCITLRPPD--F-----------AIPIEELKSTISK---NTRAILMNTPHNPTGKMF-TREELNVIASLCIENDVLVFSD 281 (434)
Q Consensus 219 ~~v~~~~~~--~-----------~~d~~~l~~~i~~---~~~~i~~~~p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~D 281 (434)
..+|+.... + .-+++.+++++.. +..+|++.......|.+. +.+.+++|.++|++||+++|+|
T Consensus 212 ~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~D 291 (464)
T TIGR00699 212 PQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVD 291 (464)
T ss_pred eecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 112221100 0 0135667777743 456677665566678766 6777999999999999999999
Q ss_pred CcCCccccCCCCccccCCCC--CCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHH
Q 013883 282 EVYDKLAFEMDHISIASLPG--MYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAAL 359 (434)
Q Consensus 282 eay~~~~~~~~~~~~~~~~~--~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L 359 (434)
|++.+|...|.......+.- .+| +.+++|.+| .| |+++..+ .+..........+++.++.+..++.+.|
T Consensus 292 EV~tGfGrtG~~fa~e~~gv~~~PD----i~t~gK~lg-~g---G~~~~~~-~~~~~~~~~~~~T~~gnp~~~aaa~a~L 362 (464)
T TIGR00699 292 EVQTGVGATGKFWAHEHWNLDDPPD----MVTFSKKFQ-TA---GYFFHDP-AFRPNKPYRQFNTWMGDPSRALILREII 362 (464)
T ss_pred eeeeCCCCCcchhHHHhcCCCCCCC----EEEehhhhc-cC---Cccccch-hccCCCCcccccCCCCCHHHHHHHHHHH
Confidence 99998876555433333321 133 567899996 32 4444432 1111011123357777888887777777
Q ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhh----CC--CEeec-CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 360 RAPETYYEELKRDYSAKKAILVEGLNA----VG--FKVFP-SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
+..++ +++.++.+++-+++.+.|++ .+ +..+. ..-|+++-+.+... .....+.+.++++ ||++.+.
T Consensus 363 ~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~--~~~~~i~~~~~~~-Gvl~~~~ 435 (464)
T TIGR00699 363 QEIKR--KDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDE--AKRDKLLKKARNN-GVNIGGC 435 (464)
T ss_pred HHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCH--HHHHHHHHHHHHC-CcEEecC
Confidence 64211 22334444444555555544 33 11222 13344444454211 1134677777665 9999763
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-11 Score=119.07 Aligned_cols=260 Identities=12% Similarity=0.040 Sum_probs=172.4
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc-CCCCeEEEcCCCchhH-H-HHHHHcCC-EEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI-NPGDEVILFAPFYDSY-E-ATLSMAGA-KIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~-~~gd~Vlv~~p~y~~~-~-~~~~~~G~-~~~~v~~ 223 (434)
..++.+.+.+.+.+.++.+-+.+ -++++.|++.++++++..++ ++||+|++.. .|..- . ++++..|+ ++..+..
T Consensus 37 F~~i~~e~~~~L~~l~~~~~~~~-v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~r~~~eia~~~g~~~v~~l~~ 114 (374)
T TIGR01365 37 GKEKLAEAIKKTREMLGVPADYL-IGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGKGWVTDVTKQLKLPDVRVLEA 114 (374)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcE-EEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHHHHHHHHHHhcCCCCcEEEcC
Confidence 35666677777777777532222 46679999999999999999 5899999865 44442 4 78888999 4777765
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHH-cCcEEEEcCcCCccccCCCCccccCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIE-NDVLVFSDEVYDKLAFEMDHISIASLPGM 302 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~-~~~~iI~Deay~~~~~~~~~~~~~~~~~~ 302 (434)
.+ +..+|++.++. . +.|++++....||+..+.+ +++ ++ ++.++|+|.+-+... ....+.
T Consensus 115 ~~-g~~~~~~~ve~--~---~~v~~vhnETSTGv~npv~---~i~---~~~~~~lliVDavSs~g~---~~l~~d----- 174 (374)
T TIGR01365 115 EY-GKLPDLKKVDF--K---NDVVFTWNGTTSGVRVPNG---DFI---PADREGLTICDATSAAFA---QDLDYH----- 174 (374)
T ss_pred CC-CCCCCHHHcCC--C---CCEEEecCCCchheecccc---ccc---cccCCCcEEEEccchhcC---CCCChh-----
Confidence 43 56778888873 1 2356666677889988753 343 33 589999999877532 222222
Q ss_pred CCceEEEccCChhhccccceeeeEEeChhhHHHHHHH-----------------------hhccccCCchHHHHHHHHHH
Q 013883 303 YERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA-----------------------HSFLTFATSTPMQWAATAAL 359 (434)
Q Consensus 303 ~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~-----------------------~~~~~~~~~~~~q~a~~~~L 359 (434)
+-.+++.|--|.+++|+ .+++++.+++.+++.+.. .....++++....+++..+|
T Consensus 175 -~iDv~~tgsQK~L~~pp-Gls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l 252 (374)
T TIGR01365 175 -KLDVVTFSWQKVLGGEG-AHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDAL 252 (374)
T ss_pred -HCcEEEEechhccCCCC-ceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHH
Confidence 23477888999998654 478889888877665421 11234555666677777767
Q ss_pred hCC-h-HHHHHHHHHHHHHHHHHHHHhhhCC-CEeecC----CeeEEEeeecCCCCCC----C-----HHHHHHHHHHhc
Q 013883 360 RAP-E-TYYEELKRDYSAKKAILVEGLNAVG-FKVFPS----SGTYFVVVDHTPFGHE----T-----DIAFCEYLIKEV 423 (434)
Q Consensus 360 ~~~-~-~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~----~~~~~~~~~~~~~~~~----~-----~~~~~~~Ll~~~ 423 (434)
+.. + ..++++.++++++.+.+++.++++| +.+... .......+.+...+.+ + ..++...| +++
T Consensus 253 ~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~ 331 (374)
T TIGR01365 253 KWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTL-EKE 331 (374)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHH-HHC
Confidence 532 2 2588899999999999999999998 666542 2333333443222221 2 34565555 455
Q ss_pred CeEEECCCC
Q 013883 424 GVVAIPTSV 432 (434)
Q Consensus 424 GV~v~pG~~ 432 (434)
||.+.+|-.
T Consensus 332 gi~i~~G~~ 340 (374)
T TIGR01365 332 GVAYDIGSY 340 (374)
T ss_pred CEEEecccc
Confidence 999998753
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-10 Score=119.05 Aligned_cols=296 Identities=11% Similarity=0.066 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCC-----CCcEEEcCChHHHHHHHHHHccC--------
Q 013883 126 FVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDP-----EKEVTVTSGCTEAIAATILGLIN-------- 192 (434)
Q Consensus 126 ~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-----~~~i~~t~G~~~ai~~~~~~l~~-------- 192 (434)
.+.+.+..++......|....+..++++.+.+++.+..|.+-+. . .-++++|+++++..++.+..+
T Consensus 98 ~lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~-gG~~tsggs~anl~al~~AR~~~~~~~g~ 176 (490)
T PLN02880 98 FLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNG-GGVIQGTASEAVLVVLLAARDRVLRKVGK 176 (490)
T ss_pred HHHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCC-ceEEcCccHHHHHHHHHHHHHHHHHHhcc
Confidence 44444444444333344444467899999999999998875321 1 357789989987766554321
Q ss_pred ---CCCeEEEcCCCchhHHHHHHHcCCE---EEEEEcCC-CCCCCCHHHHHhhcccC------CcEEEecCCCCCcccCC
Q 013883 193 ---PGDEVILFAPFYDSYEATLSMAGAK---IKCITLRP-PDFAIPIEELKSTISKN------TRAILMNTPHNPTGKMF 259 (434)
Q Consensus 193 ---~gd~Vlv~~p~y~~~~~~~~~~G~~---~~~v~~~~-~~~~~d~~~l~~~i~~~------~~~i~~~~p~NPTG~~~ 259 (434)
+.-.|++.+-+|......+..+|+. ++.||.+. +++.+|++.|+++|.+. +-+|+.+...-.||.+-
T Consensus 177 ~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiD 256 (490)
T PLN02880 177 NALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVD 256 (490)
T ss_pred cccCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccC
Confidence 1124667888899999999999994 78899885 46789999999999642 33444455688899887
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcCcCCccccCC-CCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh--hHHHH
Q 013883 260 TREELNVIASLCIENDVLVFSDEVYDKLAFEM-DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH--LTWGV 336 (434)
Q Consensus 260 ~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~--~~~~l 336 (434)
| +++|+++|++||+|+.+|.+|.++..-- +... .+.+...-.-+..++.|.++ ....+|+++.+.. +...+
T Consensus 257 p---l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~--~l~gie~aDSit~d~HKwl~-~P~~~g~llvr~~~~l~~~~ 330 (490)
T PLN02880 257 P---LLELGKIAKSNGMWFHVDAAYAGSACICPEYRH--YIDGVEEADSFNMNAHKWFL-TNFDCSLLWVKDRNALIQSL 330 (490)
T ss_pred c---HHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHH--HhcCchhcCEEEECchhhcC-CCccEEEEEEeCHHHHHHHH
Confidence 4 6678999999999999999999875321 1100 11111122356778999986 6677898888632 11211
Q ss_pred HHHhhcc--------------ccCC---chHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecC-Ce
Q 013883 337 RQAHSFL--------------TFAT---STPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAV-GFKVFPS-SG 396 (434)
Q Consensus 337 ~~~~~~~--------------~~~~---~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~ 396 (434)
..-..+. .++. .......+...|+. +.+.+++..++..+..+++.+.|++. ++++..+ +.
T Consensus 331 ~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~ 410 (490)
T PLN02880 331 STNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIF 410 (490)
T ss_pred ccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCce
Confidence 1100000 0000 00001111112333 45566667777778888899988775 7887654 55
Q ss_pred eEEEeeecCCCCCCC------HHHHHHHHHHhcCeEEEC
Q 013883 397 TYFVVVDHTPFGHET------DIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 397 ~~~~~~~~~~~~~~~------~~~~~~~Ll~~~GV~v~p 429 (434)
++. .+++.+..... ..++.++|.++..+.+.+
T Consensus 411 ~iv-~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~ 448 (490)
T PLN02880 411 SLV-CFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISH 448 (490)
T ss_pred EEE-EEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEE
Confidence 544 44444322111 134666666665666553
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-10 Score=115.92 Aligned_cols=295 Identities=12% Similarity=0.085 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCC-----CCCcEEEcCChHHHHHHHHHHccC--------
Q 013883 126 FVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVD-----PEKEVTVTSGCTEAIAATILGLIN-------- 192 (434)
Q Consensus 126 ~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~-----~~~~i~~t~G~~~ai~~~~~~l~~-------- 192 (434)
.+-+.+..++......|....+..++++.+.+++.+..|.+-. .. .=++++|+++++..++.+..+
T Consensus 146 ~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~-gG~~~sGgSeAnl~al~aAR~~~~~~~g~ 224 (539)
T PLN02590 146 FLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNG-GGVIQGTGCEAVLVVVLAARDRILKKVGK 224 (539)
T ss_pred HHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCC-ceEEcCchHHHHHHHHHHHHHHHHhhhcc
Confidence 4445444454433344545557789999999999999987532 12 356788889888776655322
Q ss_pred ---CCCeEEEcCCCchhHHHHHHHcCC---EEEEEEcCC-CCCCCCHHHHHhhcccC------CcEEEecCCCCCcccCC
Q 013883 193 ---PGDEVILFAPFYDSYEATLSMAGA---KIKCITLRP-PDFAIPIEELKSTISKN------TRAILMNTPHNPTGKMF 259 (434)
Q Consensus 193 ---~gd~Vlv~~p~y~~~~~~~~~~G~---~~~~v~~~~-~~~~~d~~~l~~~i~~~------~~~i~~~~p~NPTG~~~ 259 (434)
+.-.|++.+-+|......+..+|+ +++.||.+. +++.+|++.|+++|.+. +-+|+.+...-.||.+=
T Consensus 225 ~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiD 304 (539)
T PLN02590 225 TLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVD 304 (539)
T ss_pred cCCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccC
Confidence 112466678899999999999998 588999985 36899999999999652 23444455577888764
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcCcCCccccC-CCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh--hHHHH
Q 013883 260 TREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH--LTWGV 336 (434)
Q Consensus 260 ~~e~l~~i~~la~~~~~~iI~Deay~~~~~~-~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~--~~~~l 336 (434)
.+++|+++|++||+|+.+|.||.++..- .+.... +.+...-.=+...+.|.+. ...-+|.+..+.. +.+.+
T Consensus 305 ---pl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~--~~Gie~ADSit~D~HK~l~-~p~~cg~llvr~~~~l~~a~ 378 (539)
T PLN02590 305 ---PLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKF--IDGIENADSFNMNAHKWLF-ANQTCSPLWVKDRYSLIDAL 378 (539)
T ss_pred ---CHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHH--hcCCccCCEEEECchhhcC-cCcCEEEEEecCHHHHHHHh
Confidence 5777999999999999999999987532 111111 1111111234567899887 5677888887642 22222
Q ss_pred HHHhhcc----------------ccCCch-HHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecC-Ce
Q 013883 337 RQAHSFL----------------TFATST-PMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAV-GFKVFPS-SG 396 (434)
Q Consensus 337 ~~~~~~~----------------~~~~~~-~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~ 396 (434)
.....+. ....+. .....+...|+. +.+.++++.++..+..+++.+.+++. +|+++.+ +-
T Consensus 379 ~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l 458 (539)
T PLN02590 379 KTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYF 458 (539)
T ss_pred hcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCce
Confidence 1111111 011111 111222223332 35667888888889999999999876 7887654 44
Q ss_pred eEEEeeecCCCCCCC------HHHHHHHHHHhcCeEEE
Q 013883 397 TYFVVVDHTPFGHET------DIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 397 ~~~~~~~~~~~~~~~------~~~~~~~Ll~~~GV~v~ 428 (434)
+ .+.+++.+.+... ..++.++|.++-.+++.
T Consensus 459 ~-iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs 495 (539)
T PLN02590 459 S-LVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFIS 495 (539)
T ss_pred E-EEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4 3344443322111 13455555555334443
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-10 Score=120.92 Aligned_cols=186 Identities=13% Similarity=0.101 Sum_probs=125.0
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCC
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD 227 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~ 227 (434)
+.+..+.+|+.++ .++..+++||++.++..++.+.+.+||.|+++..+|.+..+.+.+.|+.+++++.....
T Consensus 197 i~eAe~~aA~~fg--------Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~ 268 (713)
T PRK15399 197 HLEAEEYIARTFG--------AEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNA 268 (713)
T ss_pred HHHHHHHHHHHhC--------CCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEEecccccc
Confidence 4456666666655 44478999999999999999999999999999999999999999999999998654323
Q ss_pred C----CCCH-----HHHHhhcccC-----CcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEE-EEcCcCCccc-cCC
Q 013883 228 F----AIPI-----EELKSTISKN-----TRAILMNTPHNPTGKMFTREELNVIASLCIENDVLV-FSDEVYDKLA-FEM 291 (434)
Q Consensus 228 ~----~~d~-----~~l~~~i~~~-----~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~i-I~Deay~~~~-~~~ 291 (434)
+ +++. +.+++++... ++++++++| +-.|++++. ++|+++| |+.+ ++||||.... |..
T Consensus 269 ~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~---~~I~~~~---g~~~ilvDEAhgah~~F~p 341 (713)
T PRK15399 269 LGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNT---DWIKQTL---DVPSIHFDSAWVPYTHFHP 341 (713)
T ss_pred cCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCH---HHHHHHh---CCCEEEEeccchhhhhcCc
Confidence 2 3455 8888888652 357888777 667999954 5566666 5555 6999997543 333
Q ss_pred CCccccCCC---CCCCceEEEccCChhhccccc-eeeeEEeChhhH-HHHHHHhhccccCCchH
Q 013883 292 DHISIASLP---GMYERTVTMNSLGKTFSLTGW-KIGWAIAPPHLT-WGVRQAHSFLTFATSTP 350 (434)
Q Consensus 292 ~~~~~~~~~---~~~~~~i~i~S~SK~~g~~G~-R~G~~~~~~~~~-~~l~~~~~~~~~~~~~~ 350 (434)
.......+. +....++.++|..|.++ ++ -.++++.+..+- ++++........+.|..
T Consensus 342 ~~~~~sam~~~~~aD~~i~~tQStHKtL~--alTQaS~iHvk~~vd~~~~n~a~~m~~STSPsY 403 (713)
T PRK15399 342 IYQGKSGMSGERVPGKVIFETQSTHKMLA--AFSQASLIHIKGEYDEETFNEAFMMHTSTSPSY 403 (713)
T ss_pred ccCCcChhhCCCCCCeeeeeeeehhcccc--ccchheeeeecCCCCHHHHHHHHHHHcCCCcHH
Confidence 222111121 11223456899999984 44 356888765432 34444333333344443
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-10 Score=126.63 Aligned_cols=267 Identities=16% Similarity=0.142 Sum_probs=165.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCCCCCcEEE-cCChHHHHHHHHHHc----cCCCC----eEEEcCCCchhHHHHHHHcCC
Q 013883 146 HGVPEFNSAIASRFKKDSGLEVDPEKEVTV-TSGCTEAIAATILGL----INPGD----EVILFAPFYDSYEATLSMAGA 216 (434)
Q Consensus 146 ~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~-t~G~~~ai~~~~~~l----~~~gd----~Vlv~~p~y~~~~~~~~~~G~ 216 (434)
+|..++...+.+++.+..|.+ ++.+ .+|++++....+.++ ..+|| +|++++..|+.....+...|+
T Consensus 538 qG~l~~i~e~q~~l~eltG~d-----~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~ 612 (954)
T PRK05367 538 AGYRELIDQLEAWLAEITGYD-----AVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGM 612 (954)
T ss_pred HHHHHHHHHHHHHHHHHHCCC-----CEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCC
Confidence 466788888888888888863 3444 445555553433333 25565 599999999888888899999
Q ss_pred EEEEEEcCCCCCCCCHHHHHhhccc---CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCC
Q 013883 217 KIKCITLRPPDFAIPIEELKSTISK---NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH 293 (434)
Q Consensus 217 ~~~~v~~~~~~~~~d~~~l~~~i~~---~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~ 293 (434)
+++.++.+. ++.+|+++|++++++ ++.+|++.+|++-.+... ++++|+++|+++|+++++|.++......
T Consensus 613 ~vv~v~~d~-~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~---~I~eI~~i~h~~G~~v~VDgA~~~al~~--- 685 (954)
T PRK05367 613 KVVVVACDE-NGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEE---TIREICEIVHEHGGQVYLDGANMNAQVG--- 685 (954)
T ss_pred EEEEECCCC-CCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecC---CHHHHHHHHHHcCCEEEEECcChhhccC---
Confidence 999999874 678999999999966 356677778776533333 4888999999999999999999642211
Q ss_pred ccccCCCCCCCceEEEccCChhhc----cccceeeeEEeChhhHHHHHHHh-----h---ccccCCchHH----HHHHHH
Q 013883 294 ISIASLPGMYERTVTMNSLGKTFS----LTGWKIGWAIAPPHLTWGVRQAH-----S---FLTFATSTPM----QWAATA 357 (434)
Q Consensus 294 ~~~~~~~~~~~~~i~i~S~SK~~g----~~G~R~G~~~~~~~~~~~l~~~~-----~---~~~~~~~~~~----q~a~~~ 357 (434)
+. -++..+-.++..+..|.|+ ..|.-+|.+.+.+++...+-... . ......+... ..++..
T Consensus 686 --l~-~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~ 762 (954)
T PRK05367 686 --LA-RPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWM 762 (954)
T ss_pred --CC-ChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHH
Confidence 11 1112234578888999974 24555888888765543331110 0 0111111221 111222
Q ss_pred HHhC-ChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEE--EeeecCCCC---CCCHHHHHHHHHHhcCeEEE
Q 013883 358 ALRA-PETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYF--VVVDHTPFG---HETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 358 ~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~Ll~~~GV~v~ 428 (434)
++.. +.+.+++..++...+.+++.+.|++. ++.+..+.+..+ +.+++.+.. ..+..+++++|. ++|+...
T Consensus 763 yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~-d~G~~~~ 839 (954)
T PRK05367 763 YIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLI-DYGFHAP 839 (954)
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeecccccCCCCHHHHHHHHH-HCCCeEe
Confidence 3332 45667777777778889999988763 333322211110 223332211 124678999985 5588653
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.8e-11 Score=105.88 Aligned_cols=171 Identities=19% Similarity=0.208 Sum_probs=140.1
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-C
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-P 226 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~ 226 (434)
+..+.+.++++++ -+ .+-+|+|+.++=++++.+++.+||.|++....+....-+++.+|+++..||-.. +
T Consensus 63 I~~F~~dlaeFlg--------~D-~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~P 133 (382)
T COG1103 63 IKDFLEDLAEFLG--------MD-EVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYP 133 (382)
T ss_pred HHHHHHHHHHHhC--------Cc-eeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCC
Confidence 4577788888887 44 789999999999999999999999999999999988889999999999999653 6
Q ss_pred CCCCCHHHHHhhccc-------CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCC
Q 013883 227 DFAIPIEELKSTISK-------NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASL 299 (434)
Q Consensus 227 ~~~~d~~~l~~~i~~-------~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~ 299 (434)
++.+++|...+.|.+ .+.+.++++|....|... +.++++++|++++++++...+|..... +.+....
T Consensus 134 ey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~---Dakkva~ic~e~gvPlllN~AYt~Grm---pvs~ke~ 207 (382)
T COG1103 134 EYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLA---DAKKVAKICREYGVPLLLNCAYTVGRM---PVSGKEI 207 (382)
T ss_pred ceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCch---hhHHHHHHHHHcCCceEeecceeeccc---ccccccc
Confidence 788999888887743 356778889988888765 788899999999999999999986332 2222222
Q ss_pred CCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHH
Q 013883 300 PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQ 338 (434)
Q Consensus 300 ~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~ 338 (434)
...++++|-.|.++ +.-.+|.+..+.++.+.+-+
T Consensus 208 ----g~DFiVgSGHKsmA-As~PiGvl~~~eE~ae~V~r 241 (382)
T COG1103 208 ----GADFIVGSGHKSMA-ASAPIGVLAMSEEWAEIVLR 241 (382)
T ss_pred ----CCCEEEecCccchh-ccCCeeEEeehhHHHHHHHh
Confidence 33588999999998 44579999999988876543
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-10 Score=120.14 Aligned_cols=299 Identities=14% Similarity=0.138 Sum_probs=176.6
Q ss_pred eeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC---CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcC-ChHHHHHHH
Q 013883 111 AINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYAR---GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTS-GCTEAIAAT 186 (434)
Q Consensus 111 ~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~-G~~~ai~~~ 186 (434)
.+.||.-...+++-.....+....+.. .+.|.| .+|..++..++.+++.+..|.+. +-+-. ++..+..+.
T Consensus 502 ~~~LGsCTmK~n~~~~~~p~s~~eF~t-~hPyqp~e~sQG~lq~i~elq~~l~eLtGmd~-----~Sl~p~sGA~gE~A~ 575 (954)
T PRK12566 502 MIPLGSCTMKLNATSEMIPITWPEFAQ-LHPFAPREQAEGYRAMIDELEAWLCAITGFDA-----ICMQPNSGAQGEYAG 575 (954)
T ss_pred cccCcccccCcCcHHhhhcccchhhhc-CCCCCchhhhcCHHHHHHHHHHHHHHHHCCCe-----EeecCCchHHHHHHH
Confidence 456665333334333333222222222 267888 78998888888999988888643 23333 334444344
Q ss_pred HHHcc----C---C-CCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc---cCCcEEEecCCCCCc
Q 013883 187 ILGLI----N---P-GDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS---KNTRAILMNTPHNPT 255 (434)
Q Consensus 187 ~~~l~----~---~-gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~---~~~~~i~~~~p~NPT 255 (434)
+.++. . + .++|+++.-.|+.....+...|++++.++.++ ++.+|+++|++.++ .++++|.+.+|++-.
T Consensus 576 Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~~~GieVv~Vp~D~-~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~G 654 (954)
T PRK12566 576 LLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQMAGMRVVIVECDP-DGNVDLDDLKAKAAAAGDRLSCLMITYPSTHG 654 (954)
T ss_pred HHHHHHHHHhcCCCCCCEEEecccccccCHHHHHHCCCEEEEeccCC-CCCcCHHHHHHHhhccCCCEEEEEEEecCcCc
Confidence 44432 2 2 35678887777444445778899999999984 77999999999997 467777777776655
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcc----ccceeeeEEeChh
Q 013883 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSL----TGWKIGWAIAPPH 331 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~----~G~R~G~~~~~~~ 331 (434)
+. .+++++|+++|+++|+++++|.++..-.. ....++..+-.++..+..|.|+. .|.-+|.+...++
T Consensus 655 v~---e~~V~eI~~iah~~Galv~vDgA~~~a~~------~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~ 725 (954)
T PRK12566 655 VY---EEGIREICEVVHQHGGQVYMDGANLNAQV------GLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAH 725 (954)
T ss_pred ee---cchHHHHHHHHHHcCCEEEEEeeChhhcc------CCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhh
Confidence 43 34699999999999999999999852111 11111234456888999998852 2444666555554
Q ss_pred hHHHHHHHh---------hcc-ccCC---chHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCe
Q 013883 332 LTWGVRQAH---------SFL-TFAT---STPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSG 396 (434)
Q Consensus 332 ~~~~l~~~~---------~~~-~~~~---~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 396 (434)
+...+.... +.. ..+. +.....++..++.. +.+ +++.......+.+++.+.|.+. ++.+.++.+
T Consensus 726 L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~~~v~~~~~~~ 804 (954)
T PRK12566 726 LAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGGAFPVLYRGRNE 804 (954)
T ss_pred hhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHhhCCCCcCCCCC
Confidence 433333211 000 1111 11113333444443 344 6666666677888999988762 444422222
Q ss_pred eEE--EeeecCCCC---CCCHHHHHHHHHHhcCeEE
Q 013883 397 TYF--VVVDHTPFG---HETDIAFCEYLIKEVGVVA 427 (434)
Q Consensus 397 ~~~--~~~~~~~~~---~~~~~~~~~~Ll~~~GV~v 427 (434)
.+| +.+++.+.. ..+..+++++|+ ++||..
T Consensus 805 ~~~hEfii~~~~l~~~~g~~~~dvakRL~-d~Giha 839 (954)
T PRK12566 805 RVAHECILDLRPLKAQTGISEEDVAKRLM-DYGFHA 839 (954)
T ss_pred CeeeEEEEEccccccccCCCHHHHHHHHH-HCCcEE
Confidence 322 123332211 125678999998 568764
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-10 Score=113.22 Aligned_cols=264 Identities=17% Similarity=0.192 Sum_probs=167.6
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-C
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-P 226 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~ 226 (434)
+.+..+..|+.++ .+...+++||++.++..++.+++.+||.|+++.+++.+....+.+.|+.++.+.... +
T Consensus 72 i~eAqe~aA~~fg--------Ad~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np 143 (557)
T COG1982 72 IKEAQELAARVFG--------ADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNP 143 (557)
T ss_pred HHHHHHHHHHHhC--------CCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEecCCCCc
Confidence 4566666666665 344689999999999999999999999999999999999999999999988775432 2
Q ss_pred C----CCCCHHHHHhhcccC--C-cEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCC
Q 013883 227 D----FAIPIEELKSTISKN--T-RAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASL 299 (434)
Q Consensus 227 ~----~~~d~~~l~~~i~~~--~-~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~ 299 (434)
. ++++.+.+++++.++ . |++++.+| +-.|+++ ++++|++.+...++|+.+|+++....--.. .+...
T Consensus 144 ~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnp-TYdGv~~---n~~~i~~~~~~~~a~v~~deah~~~~~~~~--~l~~~ 217 (557)
T COG1982 144 LYGIIGGIPLETFKEALLAHPDAEKLAVITNP-TYDGVCY---NLRKIVELLHHYGAWVLYDEAHPAHFDFSP--MLPES 217 (557)
T ss_pred cccccCCCCHHHHHHHHHhChhhheeEEEecC-ccceEee---cHHHHHHHHhhcCceEEhhhcCcccccccc--cCcch
Confidence 2 568999999977653 3 66777655 3359998 466688889999999999999865321111 11111
Q ss_pred CCCCCceEEEccCChhhccccceeeeEEeCh--hh-HHHHHHHhhccccCCchHHHHHHHHHHh----C-ChHHHHHHHH
Q 013883 300 PGMYERTVTMNSLGKTFSLTGWKIGWAIAPP--HL-TWGVRQAHSFLTFATSTPMQWAATAALR----A-PETYYEELKR 371 (434)
Q Consensus 300 ~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~--~~-~~~l~~~~~~~~~~~~~~~q~a~~~~L~----~-~~~~~~~~~~ 371 (434)
......++..+|..|.++ +.--..+++.+. .+ .+++.........+.|.....|...+-+ . ..+..++..+
T Consensus 218 ~~~~~~~~~tqS~HK~l~-alSQaS~iHv~~~~~~~~~r~nea~~~h~STSPsY~l~ASlD~Ar~~~~~~G~~l~~~~~~ 296 (557)
T COG1982 218 ALNGGADFVTQSTHKLLA-ALSQASMIHVKDGRAVNHERFNEALMMHQSTSPSYPLMASLDVARMQEGNAGRELWQEVID 296 (557)
T ss_pred hhhcCceEEEechhhhhh-hhhhhHHHhhCCCccCCHHHHHHHHHHHccCCchHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 112456899999999987 444566777764 21 2344444433344445444433333311 1 1122233345
Q ss_pred HHHHHHHHHHHHhhhCC-CEeecCCe-----e----------EE------EeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 372 DYSAKKAILVEGLNAVG-FKVFPSSG-----T----------YF------VVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 372 ~~~~~~~~l~~~L~~~g-~~~~~~~~-----~----------~~------~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
...+.|+.+++...+.+ +.+..+.- + .+ +.+..+..|. ++..+...|.++ |+...
T Consensus 297 ~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gi-pg~~v~~~L~e~-gii~e 373 (557)
T COG1982 297 EAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGI-PGAIVAKYLREH-GIIPE 373 (557)
T ss_pred HHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceeccccEEEEecCCCCC-cHHHHHHHHHHc-CCeee
Confidence 55566666666666654 44433221 1 11 1122224455 577787777665 66554
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.2e-10 Score=113.48 Aligned_cols=263 Identities=13% Similarity=0.128 Sum_probs=165.9
Q ss_pred HHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCC-C--------CCCC-CcEEEcCChHHHHHHHHHHccC--------
Q 013883 131 AIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGL-E--------VDPE-KEVTVTSGCTEAIAATILGLIN-------- 192 (434)
Q Consensus 131 ~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~-~--------~~~~-~~i~~t~G~~~ai~~~~~~l~~-------- 192 (434)
+..++......|.......++.+.+.+++.+..+. + -.++ ..-++++|+++++..++.+..+
T Consensus 110 l~~~lN~n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~ 189 (522)
T TIGR03799 110 LMVALNQNLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGD 189 (522)
T ss_pred HHHHhcCCcceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhcccccc
Confidence 33344433334444445678999999998877631 1 0111 1346788999988776544311
Q ss_pred ------------------CCCeEEEcCCCchhHHHHHHHcCC---EEEEEEcCCCCCCCCHHHHHhhcc----cCCcEEE
Q 013883 193 ------------------PGDEVILFAPFYDSYEATLSMAGA---KIKCITLRPPDFAIPIEELKSTIS----KNTRAIL 247 (434)
Q Consensus 193 ------------------~gd~Vlv~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~d~~~l~~~i~----~~~~~i~ 247 (434)
++..|++.+-.|......+..+|+ +++.+|.++ ++.+|++.|+++++ .+++.+.
T Consensus 190 ~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~-~g~~d~~~L~~~i~~~~~~g~~~~~ 268 (522)
T TIGR03799 190 FKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDA-NNRIDVDALRDKCAELAEQNIKPLA 268 (522)
T ss_pred ccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCC-CCcCCHHHHHHHHHHHHHCCCCcEE
Confidence 134688888899999999999998 789999985 78999999999886 3555554
Q ss_pred ec--CCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC-CCccccCCCCCCCceEEEccCChhhccccceee
Q 013883 248 MN--TPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM-DHISIASLPGMYERTVTMNSLGKTFSLTGWKIG 324 (434)
Q Consensus 248 ~~--~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G 324 (434)
++ ..++.||.+-| +++|+++|+++|+|+++|.+|.+...-. +.... +.+...-..+..+..|.++ .-..+|
T Consensus 269 vvataGtt~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~--l~gle~aDSit~d~HK~l~-~P~g~G 342 (522)
T TIGR03799 269 IVGVAGTTETGNIDP---LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHL--LKGIERADSVTIDAHKQLY-VPMGAG 342 (522)
T ss_pred EEEEecCcCCCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHH--hcCchhCCEEEEChhhcCC-cCcccE
Confidence 43 45778999875 6668899999999999999998653211 11100 1111123467789999664 234589
Q ss_pred eEEeC-hhhHHHHHHHhhc-----------cccCCchHH-HHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhC-CC
Q 013883 325 WAIAP-PHLTWGVRQAHSF-----------LTFATSTPM-QWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAV-GF 389 (434)
Q Consensus 325 ~~~~~-~~~~~~l~~~~~~-----------~~~~~~~~~-q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 389 (434)
+++.+ ++..+.+.....+ ..+..+... ...+..+|+. ..+.++++.++..+..+++.+.|++. ++
T Consensus 343 ~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~ 422 (522)
T TIGR03799 343 MVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDF 422 (522)
T ss_pred EEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 88875 4444433221001 011111111 1123333333 24567888888899999999999876 88
Q ss_pred EeecC-CeeEEE
Q 013883 390 KVFPS-SGTYFV 400 (434)
Q Consensus 390 ~~~~~-~~~~~~ 400 (434)
+++.+ +-+..+
T Consensus 423 el~~~p~l~iv~ 434 (522)
T TIGR03799 423 ELVTEPELCLLT 434 (522)
T ss_pred EEecCCCccEEE
Confidence 87654 444333
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-10 Score=113.46 Aligned_cols=251 Identities=15% Similarity=0.069 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcEEEc-CChHHHHHHHHHHccCCCCeEEEcCCCchh-HHHHHHHc--CCEEEEEEcC
Q 013883 149 PEFNSAIASRFKKDSGLEVDPEKEVTVT-SGCTEAIAATILGLINPGDEVILFAPFYDS-YEATLSMA--GAKIKCITLR 224 (434)
Q Consensus 149 ~~lr~~ia~~l~~~~g~~~~~~~~i~~t-~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~-~~~~~~~~--G~~~~~v~~~ 224 (434)
.+.|+.++++++ .+++.+|+++ ++++.+++.++..++.+ +.+++..-.|.. +.+.+... +.++..++.+
T Consensus 44 ~~~r~~l~~l~~------~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~ 116 (361)
T TIGR01366 44 GRVREGLAELFS------LPDGYEVILGNGGATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTAD 116 (361)
T ss_pred HHHHHHHHHHhC------CCCCceEEEECCchhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhccCCceEEecC
Confidence 345555555554 3223267775 66999999999998753 334444444443 34444442 2366666655
Q ss_pred CCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCC
Q 013883 225 PPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYE 304 (434)
Q Consensus 225 ~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~ 304 (434)
+ +..++. .+.+++++|.+++..|.||+..|.++ | ++++|+++|+|.+..... ....+..
T Consensus 117 ~-~~~~~~-----~~~~~~~lV~~~h~et~tG~~~pi~~---I---~~~~g~~~iVDavqs~g~---~~idv~~------ 175 (361)
T TIGR01366 117 P-GSAPEP-----QADPGVDVIAWAHNETSTGVAVPVRR---P---EGSDDALVVIDATSGAGG---LPVDIAE------ 175 (361)
T ss_pred C-CCCCCC-----ccCCCCCEEEEcccCCccceeccccc---c---cccCCCeEEEEcCccccC---CCCCHHH------
Confidence 3 333332 35678999999999999999997654 3 588999999999987632 2222221
Q ss_pred ceEEEccCChhhccccceeeeEEeChhhHHHHHHHhh---------------------ccccCCchHHHHHHHHHHhCCh
Q 013883 305 RTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHS---------------------FLTFATSTPMQWAATAALRAPE 363 (434)
Q Consensus 305 ~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~---------------------~~~~~~~~~~q~a~~~~L~~~~ 363 (434)
-.+++.|-.|.+|.+|- +++++.+++.+++++.... ...++++.....++..+|+...
T Consensus 176 ~D~~~~s~~K~lg~~~G-l~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~ 254 (361)
T TIGR01366 176 TDVYYFAPQKNFASDGG-LWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMN 254 (361)
T ss_pred CCEEEEEchhhcCCCCc-eEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHH
Confidence 24788999999987642 6666778877766542110 1123334443445555555422
Q ss_pred H--HHHHHHHHHHHHHHHHHHHhhhCC-CEeec-CC---eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 364 T--YYEELKRDYSAKKAILVEGLNAVG-FKVFP-SS---GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 364 ~--~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+ .++...+++++..+++++.|++.+ ++.+. .. ......+.+ +.+. +..++..+|. ++||.+.+|.
T Consensus 255 ~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~-~~g~-~~~~v~~~L~-~~gI~i~~~~ 326 (361)
T TIGR01366 255 GNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDF-VDDI-DAATVAKILR-ANGIVDTEPY 326 (361)
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEEC-CCcc-CHHHHHHHHH-HCCCeeccCc
Confidence 1 256677888899999999999986 45442 11 111122223 2333 5677888784 5599998763
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-09 Score=107.15 Aligned_cols=294 Identities=13% Similarity=0.120 Sum_probs=185.7
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcC---------CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDG---------KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~---------~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~ 180 (434)
.+++|+-| | -..|+.|++++.+.+.+- ..+..+ -..++.+.+.+.+.+.++.+-+.+ -+++..|++
T Consensus 7 ~~~~f~pG-P-~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~--~f~~i~~~~~~~L~~l~~~p~~y~-v~~l~Gsgt 81 (365)
T PLN02452 7 RVFNFSAG-P-ATLPANVLAKAQAELYNWEGSGMSVMEMSHRGK--EFLSIIQKAEADLRELLDIPDNYE-VLFLQGGAS 81 (365)
T ss_pred ceEeeeCC-C-CCCCHHHHHHHHHHHhcccccCccccccCCCch--HHHHHHHHHHHHHHHHhCCCCCce-EEEEeCccH
Confidence 35677655 2 234667777776654330 111222 234666667777777777532333 566778899
Q ss_pred HHHHHHHHHccCCCCeEEEcCCCchh--HHHHHHHcCCEEEEEEcCCCC--CCCCHHHHHhhcccCCcEEEecCCCCCcc
Q 013883 181 EAIAATILGLINPGDEVILFAPFYDS--YEATLSMAGAKIKCITLRPPD--FAIPIEELKSTISKNTRAILMNTPHNPTG 256 (434)
Q Consensus 181 ~ai~~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~G~~~~~v~~~~~~--~~~d~~~l~~~i~~~~~~i~~~~p~NPTG 256 (434)
.+++++...++.+||++++.....++ ..+.++.+|...+.....+.+ .-+++++++. .++.+.|.+++-...||
T Consensus 82 ~~~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~hnETstG 159 (365)
T PLN02452 82 TQFAAIPLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEWEL--TPDAKFVHICANETIHG 159 (365)
T ss_pred HHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHcCC--CCCCcEEEECCCCCCCc
Confidence 99999999999999988887776665 456677788644333222211 2456666532 34677888877777889
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHH
Q 013883 257 KMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGV 336 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l 336 (434)
+.+. +++++. ++++|+|.+..... ....+..+ + +.+.|.-|.+|.+| +|++++++++++++
T Consensus 160 v~~~--~~~~i~------~~~lvVDa~Ss~g~---~pidv~~~----~--v~~~saqK~lGP~G--l~~v~vr~~~l~~~ 220 (365)
T PLN02452 160 VEFK--DYPDVG------NVPLVADMSSNFLS---KPVDVSKY----G--VIYAGAQKNVGPSG--VTIVIIRKDLIGNA 220 (365)
T ss_pred EecC--cccccC------CCeEEEECCccccC---cccCHHHc----C--EEEEecccccCCCC--eEEEEEcHHHHhhc
Confidence 8543 234342 38999999987642 22222221 1 23469999999888 89999998887654
Q ss_pred HHH------------hhccccCCchHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHHHhhhC-CCEe--ecC--Cee
Q 013883 337 RQA------------HSFLTFATSTPMQWAATAALRAPET--YYEELKRDYSAKKAILVEGLNAV-GFKV--FPS--SGT 397 (434)
Q Consensus 337 ~~~------------~~~~~~~~~~~~q~a~~~~L~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~--~~~--~~~ 397 (434)
... .....++++....+++..+|+...+ .++.+.++.+++.+++++.|++. |+.. ..+ ...
T Consensus 221 ~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~ 300 (365)
T PLN02452 221 RPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSL 300 (365)
T ss_pred ccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCC
Confidence 211 1112356777777777777775332 47888999999999999999985 6611 111 234
Q ss_pred EEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 398 YFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
+.+-+.+... ....+|.+.+ ++.|+...+|..
T Consensus 301 ~~vsF~~~~~--~~~~~f~~~~-~~~g~~~~~G~r 332 (365)
T PLN02452 301 MNVPFTLGGS--ELEAEFVKEA-AKAGMVQLKGHR 332 (365)
T ss_pred eEEEEEcCCc--hhHHHHHHHH-HHCCCcccCCcc
Confidence 4444444332 2455676666 566999999864
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-10 Score=103.55 Aligned_cols=175 Identities=25% Similarity=0.354 Sum_probs=126.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEc-CCCchhHHHH----------HHHcCCEEEE
Q 013883 152 NSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILF-APFYDSYEAT----------LSMAGAKIKC 220 (434)
Q Consensus 152 r~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~-~p~y~~~~~~----------~~~~G~~~~~ 220 (434)
|+.+-+.+.+.+|.....- +..+.+| ++||..++..+++|||+.+.. ---|.....+ +..+|+....
T Consensus 67 RdtLe~vyA~vf~aE~a~V-Rpq~isG-THAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~ 144 (416)
T COG4100 67 RDTLERVYAQVFGAEAALV-RPQIISG-THAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKA 144 (416)
T ss_pred hhHHHHHHHHHhcccccee-eeeeecc-hhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCcceee
Confidence 5555555555555432222 3455666 999999999999999997643 3445555554 4557778888
Q ss_pred EEcCCCCCCCCHHHHHhhcccCCcEEEecCC-CCCcccCCCHHHHHHHHHHHHHc--CcEEEEcCcCCccccCCCCcccc
Q 013883 221 ITLRPPDFAIPIEELKSTISKNTRAILMNTP-HNPTGKMFTREELNVIASLCIEN--DVLVFSDEVYDKLAFEMDHISIA 297 (434)
Q Consensus 221 v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p-~NPTG~~~~~e~l~~i~~la~~~--~~~iI~Deay~~~~~~~~~~~~~ 297 (434)
+|+.. ++.+|.+.+++++++++|+|.+.-. ..----.++.+++++++++.++- |+++++|.+|.+|+-..++...
T Consensus 145 v~Lt~-~gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EPt~v- 222 (416)
T COG4100 145 VPLTA-DGKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEPTHV- 222 (416)
T ss_pred ccccc-CCcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCcccc-
Confidence 88885 7889999999999999999988532 22222256888999999999874 8999999999999754333221
Q ss_pred CCCCCCCceEEEccCChhhccccce--eeeEEeChhhHHHHH
Q 013883 298 SLPGMYERTVTMNSLGKTFSLTGWK--IGWAIAPPHLTWGVR 337 (434)
Q Consensus 298 ~~~~~~~~~i~i~S~SK~~g~~G~R--~G~~~~~~~~~~~l~ 337 (434)
+..++.+|+-|+.| .|+- .||+.++++++++..
T Consensus 223 ------GaDliAGSLIKNpG-GgiaktGGYiaGk~~~ve~~~ 257 (416)
T COG4100 223 ------GADLIAGSLIKNPG-GGIAKTGGYIAGKAELVEAAA 257 (416)
T ss_pred ------chhhhccceeeCCC-CceeeccceeechHHHHHhhc
Confidence 23467899999988 6652 489999999987653
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=107.09 Aligned_cols=281 Identities=19% Similarity=0.199 Sum_probs=178.1
Q ss_pred cHHHHHHHHHHHHcCC----CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc------C-
Q 013883 124 PDFVKDAAIQAIRDGK----NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI------N- 192 (434)
Q Consensus 124 ~~~v~~~~~~~~~~~~----~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~------~- 192 (434)
+|.+.++++++..... .-|..-. .++.+.+.++++ -+ .++-.+.+.||.+.++.... +
T Consensus 77 hpki~~aLqeq~~kLtlssrafYnd~~--~~f~~~vt~lf~--------~~-kvlpmnTGaEa~Eta~KLaR~wgy~~K~ 145 (427)
T KOG1402|consen 77 HPKIIKALQEQADKLTLSSRAFYNDVL--GEFAEYVTKLFG--------YD-KVLPMNTGAEAVETACKLARKWGYRKKN 145 (427)
T ss_pred CHHHHHHHHHHHhHhhhhhHHHhhhhH--HHHHHHHHHhcC--------cc-eeeecccchhHHHHHHHHHHHHHHhhcc
Confidence 5778888888776421 1243322 344444444443 33 57767777999988866542 1
Q ss_pred -CCCe--EEEcCCCchhHH----------HHHHHcCC----EEEEEEcCCCCCCCCHHHHHhhcccC-CcEEEecCCCCC
Q 013883 193 -PGDE--VILFAPFYDSYE----------ATLSMAGA----KIKCITLRPPDFAIPIEELKSTISKN-TRAILMNTPHNP 254 (434)
Q Consensus 193 -~gd~--Vlv~~p~y~~~~----------~~~~~~G~----~~~~v~~~~~~~~~d~~~l~~~i~~~-~~~i~~~~p~NP 254 (434)
|.|+ |+.....|++-. +..+.+|- .+..||+. |.++|+.++++. .+++++...+..
T Consensus 146 ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~------d~eale~~l~~~~vaaFivEPIQGE 219 (427)
T KOG1402|consen 146 IPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYG------DAEALEVALKSPNVAAFIVEPIQGE 219 (427)
T ss_pred CCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccC------CHHHHHHHhcCCCeeEEEeeccccc
Confidence 3232 333333333211 11122221 13444554 789999999874 455555545889
Q ss_pred cccCCC-HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccc-ceeeeEEeChhh
Q 013883 255 TGKMFT-REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTG-WKIGWAIAPPHL 332 (434)
Q Consensus 255 TG~~~~-~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-~R~G~~~~~~~~ 332 (434)
.|++.| +..++++.++|.+||+++|.||++.++...|+......-.-.+|-++ |.|.++ .| +.+..+.++.++
T Consensus 220 aGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivi----lgKalS-GG~~Pvsavl~~~~i 294 (427)
T KOG1402|consen 220 AGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVI----LGKALS-GGVYPVSAVLADDDI 294 (427)
T ss_pred cceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEE----Eecccc-CCeeeeEEEEecHHH
Confidence 999655 45599999999999999999999999998887655443322344333 568886 44 478888899999
Q ss_pred HHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC--C----EeecCCeeEEEeeecCC
Q 013883 333 TWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG--F----KVFPSSGTYFVVVDHTP 406 (434)
Q Consensus 333 ~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~----~~~~~~~~~~~~~~~~~ 406 (434)
+..++......+|+.++++.+++.++|+-.. -+++.++.++.-+.|+..|.++. + ..+... |++..+.+.+
T Consensus 295 m~~~~pgeHgsTyggNpLg~~vaiAalevi~--eekL~era~~lG~~l~~~L~~l~~~~p~~v~~VRGr-Gl~~ai~i~~ 371 (427)
T KOG1402|consen 295 MLNIKPGEHGSTYGGNPLGCAVAIAALEVIV--EEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGR-GLLNAIVINP 371 (427)
T ss_pred HhccCCCccccccCCChHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccccccchhheeecc-ceEEEEEecc
Confidence 8777777677789999999999999888632 24567777888888888888863 2 223333 4454444432
Q ss_pred C--CCCCHHHHHHHHHHhcCeEEECC
Q 013883 407 F--GHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 407 ~--~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
. ...++-+++.+| ++.|++.-|-
T Consensus 372 ~~~~~~~aw~~cl~l-k~~g~LAkpt 396 (427)
T KOG1402|consen 372 SKTSGQDAWDVCLAL-KENGLLAKPT 396 (427)
T ss_pred ccccchhHHHHHHcc-cccccccCCC
Confidence 2 212455677766 4558876653
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-11 Score=105.56 Aligned_cols=82 Identities=21% Similarity=0.430 Sum_probs=69.1
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcC--CCCCCCCcEEEcCChHHHHHHHHHHccCCCCe
Q 013883 119 PNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSG--LEVDPEKEVTVTSGCTEAIAATILGLINPGDE 196 (434)
Q Consensus 119 p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~ 196 (434)
|++.+++.+.+++.+. ..|.+..|.++||+++++++.+.+| +.++++ +|++|+|+++++..++.++++|||.
T Consensus 70 ~d~~~~~~i~~~~~~~-----a~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd-~Ivvt~Ga~~al~~l~~~l~dpGD~ 143 (153)
T PLN02994 70 ADICTAEGTIDSFKDI-----ALFQDYHGLANFRKAIANFMAEARGGRVKFDAD-MIVLSAGATAANEIIMFCIADPGDA 143 (153)
T ss_pred cccCCcHHHHHHHHHH-----hcCCCCCCcHHHHHHHHHHHHHHhCCCCccchh-heEEcCCHHHHHHHHHHHHcCCCCE
Confidence 4555555545444442 3499999999999999999999988 678888 8999999999999999999999999
Q ss_pred EEEcCCCchh
Q 013883 197 VILFAPFYDS 206 (434)
Q Consensus 197 Vlv~~p~y~~ 206 (434)
|++++|+|++
T Consensus 144 VlVp~P~Y~~ 153 (153)
T PLN02994 144 FLVPTPYYAA 153 (153)
T ss_pred EEEeCCCCCC
Confidence 9999999963
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-09 Score=107.68 Aligned_cols=267 Identities=18% Similarity=0.188 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCC----CCCcEEEcCChHHHHHHHHHHccC--------C
Q 013883 126 FVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVD----PEKEVTVTSGCTEAIAATILGLIN--------P 193 (434)
Q Consensus 126 ~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~----~~~~i~~t~G~~~ai~~~~~~l~~--------~ 193 (434)
.+.+.+...+......|.-.....+++..+.+++.+..|.+-+ .+..=++|+|+++++..++.+..+ .
T Consensus 55 i~~~~l~~~~n~n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~ 134 (373)
T PF00282_consen 55 ILADLLASALNQNGFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAK 134 (373)
T ss_dssp HHHHHHHHHHT-BTTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccccccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhc
Confidence 4445555555544344443335678999999999999988621 112467889999998777654421 1
Q ss_pred C-----C-eEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc---C--Cc-EEEecCCCCCcccCCCH
Q 013883 194 G-----D-EVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK---N--TR-AILMNTPHNPTGKMFTR 261 (434)
Q Consensus 194 g-----d-~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~---~--~~-~i~~~~p~NPTG~~~~~ 261 (434)
| + .|++.+-.|......+..+|+.++.||.++ ++.+|+++|++++.+ + +. +|+.+.....||.+
T Consensus 135 ~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~-~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~--- 210 (373)
T PF00282_consen 135 GVEEIPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDE-DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAI--- 210 (373)
T ss_dssp TTTHCSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBT-TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB---
T ss_pred ccccccccccccccccccHHHHhcceeeeEEEEecCCc-chhhhHHHhhhhhcccccccccceeeeccCCCcccccc---
Confidence 1 2 466667689999999999999999999996 789999999998864 2 22 34455668888877
Q ss_pred HHHHHHHHHHHHcCcEEEEcCcCCccccC-CCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh-hHHHHH-H
Q 013883 262 EELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH-LTWGVR-Q 338 (434)
Q Consensus 262 e~l~~i~~la~~~~~~iI~Deay~~~~~~-~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~-~~~~l~-~ 338 (434)
+++++|+++|+++|+|+.+|.+|.+..+- ...... +.+...-.=+..++.|.++ .-..+|++..+.+ .+.... .
T Consensus 211 D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~--~~gi~~adSit~d~HK~l~-~P~~~~~~l~r~~~~l~~~~~~ 287 (373)
T PF00282_consen 211 DPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHL--LFGIERADSITIDPHKWLG-VPYGCGVLLVRDKSDLRDAFSI 287 (373)
T ss_dssp -SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGG--GTTGGGESEEEEETTTTTS--SSS-EEEEESSGGGHHGGGEE
T ss_pred cCHHHHhhhccccceeeeeccccccccccccccccc--ccccccccccccchhhhhc-CCccceeEEeecccchHHHhcc
Confidence 46788999999999999999999983321 111111 1111111234557899998 5568898888643 332111 0
Q ss_pred Hhhc----------------cccCCchHHHHHHH--HHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeec-CCee
Q 013883 339 AHSF----------------LTFATSTPMQWAAT--AALRA-PETYYEELKRDYSAKKAILVEGLNAV-GFKVFP-SSGT 397 (434)
Q Consensus 339 ~~~~----------------~~~~~~~~~q~a~~--~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~ 397 (434)
...+ .+...+. ...++. ..|+. +.+.+++..++..+..+++.+.|++. ++++.. ++-+
T Consensus 288 ~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~ 366 (373)
T PF00282_consen 288 NADYLGNDDRESDESYDYGDYTLQGSR-RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLN 366 (373)
T ss_dssp EETCTT-S-SSS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSS
T ss_pred Chhhhcccccccccccccccccccccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCce
Confidence 0000 0112222 222222 22332 35667888888889999999999987 577663 4444
Q ss_pred EEE
Q 013883 398 YFV 400 (434)
Q Consensus 398 ~~~ 400 (434)
..+
T Consensus 367 ~vc 369 (373)
T PF00282_consen 367 IVC 369 (373)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.2e-09 Score=101.34 Aligned_cols=292 Identities=14% Similarity=0.128 Sum_probs=181.2
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHc-C--------CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRD-G--------KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~-~--------~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~ 180 (434)
+.+||+-| |. ..|+.|++.+++.+.+ . ..+..+ -..++.+.+.+.+++.++++-+.+ -+++..|++
T Consensus 4 ~~~nF~aG-Pa-~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~--~F~~i~~~~~~~Lr~Ll~~P~~y~-Vlfl~GggT 78 (364)
T PRK12462 4 NQLNFSGG-PG-ALPDTVLEQVRQAVVELPETGLSVLGMSHRSS--WFSSLLAQAEADLRDLLGIPDEYG-VVFLQGGSS 78 (364)
T ss_pred ccceecCC-Cc-CCCHHHHHHHHHHHhcccccCccccccccccH--HHHHHHHHHHHHHHHHhCCCCCCe-EEEEeccHH
Confidence 45677766 32 2356676667666544 1 112222 234566666677777777643333 445667799
Q ss_pred HHHHHHHHHccCCCCeEE--EcCCCchh-HHHHHHHcCCEEEEEEcCC-C--CCCCCHHHHHhhcccCCcEEEecCCCCC
Q 013883 181 EAIAATILGLINPGDEVI--LFAPFYDS-YEATLSMAGAKIKCITLRP-P--DFAIPIEELKSTISKNTRAILMNTPHNP 254 (434)
Q Consensus 181 ~ai~~~~~~l~~~gd~Vl--v~~p~y~~-~~~~~~~~G~~~~~v~~~~-~--~~~~d~~~l~~~i~~~~~~i~~~~p~NP 254 (434)
.+++++...++.+||+++ +..-.|.. ....++.+| ++..+.... . +.-++++.+ .+.++.+.|.+++-...
T Consensus 79 ~~~ea~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~d~~~v~~t~NETs 155 (364)
T PRK12462 79 LQFSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDARAPFRHYVSNETV 155 (364)
T ss_pred HHHHHHHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCCCCcEEEEccCCCC
Confidence 999999999999999654 45555544 345566777 554443211 1 234556665 23446778877766777
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHH
Q 013883 255 TGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTW 334 (434)
Q Consensus 255 TG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~ 334 (434)
||+..+ ++.+.++.++|+|.+-..+. ....+..+ .+++.+.-|++|.+| ++.++.+++.++
T Consensus 156 tGv~~~--------~~~~~~~~llvvD~sS~~~s---~pid~~~~------dvi~agsQKnlgP~G--ltvvivs~~al~ 216 (364)
T PRK12462 156 EGLQFP--------DAAGLPDSPLIADMSSDFMS---RPFDVEAY------GMVYAHAQKNLGPAG--VTVAIIRRALLE 216 (364)
T ss_pred ceEecC--------cccccCCCeEEEEcCchhhC---CCCChHHc------cEEEeeccccCCCCc--eEEEEECHHHHh
Confidence 898875 22334689999999876542 22222222 367778889999888 788898887765
Q ss_pred HHHHH------------hhccccCCchHHHHHHHHHHhCC-hH--HHHHHHHHHHHHHHHHHHHhhhCC-CEee----cC
Q 013883 335 GVRQA------------HSFLTFATSTPMQWAATAALRAP-ET--YYEELKRDYSAKKAILVEGLNAVG-FKVF----PS 394 (434)
Q Consensus 335 ~l~~~------------~~~~~~~~~~~~q~a~~~~L~~~-~~--~~~~~~~~~~~~~~~l~~~L~~~g-~~~~----~~ 394 (434)
+.... .....++++....+++..+|+.. ++ .++.+.++.+++.+.+++.+.+.. +-.. ..
T Consensus 217 ~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~ 296 (364)
T PRK12462 217 RVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAA 296 (364)
T ss_pred hccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhh
Confidence 43221 11234467777788877777653 33 688889999999999999999874 3221 12
Q ss_pred CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 395 SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
...|-+.+++... +...+|.+.+ ++.|+.-..|.
T Consensus 297 RS~mnv~f~~~~~--~l~~~f~~~a-~~~gl~~lkGh 330 (364)
T PRK12462 297 RSTMNVAFRFRQP--RLDTLFKEQS-TEAGFCGLSGH 330 (364)
T ss_pred cCcceEEEEcCCH--HHHHHHHHHH-HHCCCccccCC
Confidence 3445555554321 1244555554 56698877765
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.8e-09 Score=101.60 Aligned_cols=221 Identities=16% Similarity=0.097 Sum_probs=149.5
Q ss_pred cHHHHHHHHHHHHcCC-CCCCCCCCcH-HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEE---
Q 013883 124 PDFVKDAAIQAIRDGK-NQYARGHGVP-EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVI--- 198 (434)
Q Consensus 124 ~~~v~~~~~~~~~~~~-~~Y~~~~G~~-~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl--- 198 (434)
.+.+.+++.+++.... ..|.-..|.. +=...+++.+. +.. ..+ .+++++..+.|+.+++.++..++..|+
T Consensus 40 ~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~---~~~-~ae-a~~ivnnn~aAVll~~~al~~~~EvVis~g 114 (395)
T COG1921 40 SPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLC---GLT-GAE-AAAIVNNNAAAVLLTLNALAEGKEVVVSRG 114 (395)
T ss_pred CHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHh---ccc-chh-heeeECCcHHHHHHHHhhhccCCeEEEEcc
Confidence 5667777777766521 2333333322 11223444443 221 234 689999999999999998887544433
Q ss_pred --EcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCC-cccCCCHHHHHHHHHHHHHcC
Q 013883 199 --LFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNP-TGKMFTREELNVIASLCIEND 275 (434)
Q Consensus 199 --v~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NP-TG~~~~~e~l~~i~~la~~~~ 275 (434)
++ +..+...++++..|++++.|.... .-...+++.+|++++++++-+.-+|- ---.++ .++++++|++||
T Consensus 115 ~lV~-gg~~~v~d~~~~aG~~l~EvG~tn---~t~~~d~~~AIne~ta~llkV~s~~~~f~~~l~---~~~l~~ia~~~~ 187 (395)
T COG1921 115 ELVE-GGAFRVPDIIRLAGAKLVEVGTTN---RTHLKDYELAINENTALLLKVHSSNYGFTGMLS---EEELVEIAHEKG 187 (395)
T ss_pred cccc-CCCCChhHHHHHcCCEEEEecccC---cCCHHHHHHHhccCCeeEEEEeecccccccccc---HHHHHHHHHHcC
Confidence 23 688889999999999999987653 24678899999999999876655543 212333 455889999999
Q ss_pred cEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHH
Q 013883 276 VLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAA 355 (434)
Q Consensus 276 ~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~ 355 (434)
+++|+|.+-..... ..+.+..+.. .+-.++++|-.|.+| |.+.|.++++++++++++...-...+....+...+.
T Consensus 188 lpvivD~aSg~~v~--~e~~l~~~la-~GaDLV~~SgdKllg--GPqaGii~GkKelI~~lq~~~l~Ralrv~K~tla~l 262 (395)
T COG1921 188 LPVIVDLASGALVD--KEPDLREALA-LGADLVSFSGDKLLG--GPQAGIIVGKKELIEKLQSHPLKRALRVDKETLAAL 262 (395)
T ss_pred CCEEEecCCccccc--cccchhHHHh-cCCCEEEEecchhcC--CCccceEechHHHHHHHHhhhhhhhhhcCcHhHHHH
Confidence 99999998866542 1122222221 234578889999986 899999999999999887655444566666666666
Q ss_pred HHHHhC
Q 013883 356 TAALRA 361 (434)
Q Consensus 356 ~~~L~~ 361 (434)
.++|+.
T Consensus 263 ~~aLe~ 268 (395)
T COG1921 263 EAALEL 268 (395)
T ss_pred HHHHHH
Confidence 666654
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-09 Score=102.20 Aligned_cols=300 Identities=18% Similarity=0.201 Sum_probs=192.2
Q ss_pred hcCCeeEeCCC-CCCCCCcHHHHHHHHHHHHcC---C----CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCC
Q 013883 107 IKHGAINLGQG-FPNFDGPDFVKDAAIQAIRDG---K----NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSG 178 (434)
Q Consensus 107 ~~~~~i~l~~g-~p~~~~~~~v~~~~~~~~~~~---~----~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G 178 (434)
.+.+++||+.. +.++...+.+.+.+...++.- . .-|+...-+.+|.+.||++++ .++.|+...|
T Consensus 92 ~G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G--------~E~aivYs~g 163 (467)
T KOG1358|consen 92 DGKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMG--------TEDAIVYSYG 163 (467)
T ss_pred cCceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhC--------Ccceeeeccc
Confidence 34578899775 777888899999888888762 1 236666667789999999987 3435666666
Q ss_pred hHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCC-------------cE
Q 013883 179 CTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNT-------------RA 245 (434)
Q Consensus 179 ~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~-------------~~ 245 (434)
..++..++.++++.||.|.+..-..+.....++...-.+..+..+ |+++++..+.+.+ +.
T Consensus 164 -F~ti~S~ipafsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkhn------dm~~lerll~E~~~~~~K~~k~~~~Rrf 236 (467)
T KOG1358|consen 164 -FSTIESAIPAFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKHN------DMEDLERLLPEQEDEDQKNPKKALTRRF 236 (467)
T ss_pred -cchhhhcchhhhccCcEEEEehhhhHHHHHHHhhhhheeEEecCC------CHHHHHHhccCcchhhhhccccccceEE
Confidence 778888899999999999999999988988888887777766544 5667766553311 23
Q ss_pred EEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCC--CCCCceEEEccCChhhcccccee
Q 013883 246 ILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLP--GMYERTVTMNSLGKTFSLTGWKI 323 (434)
Q Consensus 246 i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~--~~~~~~i~i~S~SK~~g~~G~R~ 323 (434)
|++..---+||.+.+ +.+|+++..++...+|.||.|+....+.....+.... +..+-.++++|+.-+++-.|
T Consensus 237 iv~EGl~~N~g~i~p---l~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~G--- 310 (467)
T KOG1358|consen 237 IVVEGLYANTGDICP---LPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGG--- 310 (467)
T ss_pred EEEEeeccCCCcccc---cHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccccC---
Confidence 445556777998885 5668888999999999999998766554333222221 12355688889998887454
Q ss_pred eeEEeChhhHHHHHHHhhccccCC--chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEE
Q 013883 324 GWAIAPPHLTWGVRQAHSFLTFAT--STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFV 400 (434)
Q Consensus 324 G~~~~~~~~~~~l~~~~~~~~~~~--~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~ 400 (434)
|+.+++.-+++.-+.-.....|+. ++....++..++.- .++-.++.+.++.....+-+.|... ++.+....-....
T Consensus 311 gFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i-~~~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~SPi~ 389 (467)
T KOG1358|consen 311 GFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILI-EEWNPEIVQPLRAKVAKFHAALSSNSGFIVSGSPESPII 389 (467)
T ss_pred ceeecceeeEeeeeccccceeeeccCchhhhhhHHHHHHH-HhhCcchhhhhhccccccchhhhcCCceEEecCcCCcee
Confidence 787775544432221111122333 33344444445543 2333345556666666666777664 5666654444444
Q ss_pred eeecCC-CCC-CCH----HHHHHHHHHhcCeEEEC
Q 013883 401 VVDHTP-FGH-ETD----IAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 401 ~~~~~~-~~~-~~~----~~~~~~Ll~~~GV~v~p 429 (434)
.+.+.+ .+. ++. ++++++.+.+ |+.++-
T Consensus 390 hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~ll~~ 423 (467)
T KOG1358|consen 390 HLQLERSYGSREKEEKLLEEIVDKCIAE-GVLLTR 423 (467)
T ss_pred eeeecccccchHHHHHHHHHHHHHHHhh-cceehh
Confidence 444433 111 111 3455555555 776653
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-08 Score=109.19 Aligned_cols=279 Identities=14% Similarity=0.135 Sum_probs=163.6
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHH--cCCCCCCCC--CCc----HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 114 LGQGFPNFDGPDFVKDAAIQAIR--DGKNQYARG--HGV----PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 114 l~~g~p~~~~~~~v~~~~~~~~~--~~~~~Y~~~--~G~----~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
++.|+=+.-.|+.+.+.+.+..+ ...+.|.+- +|. .+++..++++++ .+++ ++.+..+++++.++
T Consensus 108 iG~G~y~~~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG------~~~a-naSL~d~aTAaaea 180 (993)
T PLN02414 108 IGMGYYNTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTG------LPMS-NASLLDEGTAAAEA 180 (993)
T ss_pred cCCCCCCccCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhC------CChh-hEeecCChHHHHHH
Confidence 35564333455666555544332 122334432 343 345555666554 5566 89999999999998
Q ss_pred HHHHc-cCCC--CeEEEcCCCchhHHHHH----HHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccC
Q 013883 186 TILGL-INPG--DEVILFAPFYDSYEATL----SMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKM 258 (434)
Q Consensus 186 ~~~~l-~~~g--d~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~ 258 (434)
++.++ +++| |+|++++-.|+.+...+ +..|++++.++.+.. + ...+.+..+++..| |.+|.+
T Consensus 181 ~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~----~------~~~~~v~~vlvq~P-~~~G~v 249 (993)
T PLN02414 181 MAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF----D------YSSGDVCGVLVQYP-ATDGEV 249 (993)
T ss_pred HHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh----c------cccCceEEEEEecC-CCCeEE
Confidence 87766 4544 78999999999876655 446999999887521 1 11123334444333 459998
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhh---ccccceeeeEEeChhhHHH
Q 013883 259 FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTF---SLTGWKIGWAIAPPHLTWG 335 (434)
Q Consensus 259 ~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~---g~~G~R~G~~~~~~~~~~~ 335 (434)
. ++++|+++|+++|+++++ .+... ... .+.. ++..+-.+++++--|.. |..|.++|++++.+++.+.
T Consensus 250 ~---dv~~I~~~ah~~GaL~iV-aad~l-al~----~l~~-pge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r~ 319 (993)
T PLN02414 250 L---DYAEFVKNAHANGVKVVM-ATDLL-ALT----MLKP-PGEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRL 319 (993)
T ss_pred c---CHHHHHHHHHHcCCEEEE-EECHH-Hhc----CCCC-HhhccCcEEEECCCccccCCCCCCCCeeEEEECHHHHhh
Confidence 7 577899999999999999 33321 111 1111 22234457788877765 3356779999998776543
Q ss_pred HHH-Hh-----------------------hccccCCchHHHHHHHHHH------hCChHHHHHHHHHHHHHHHHHHHHhh
Q 013883 336 VRQ-AH-----------------------SFLTFATSTPMQWAATAAL------RAPETYYEELKRDYSAKKAILVEGLN 385 (434)
Q Consensus 336 l~~-~~-----------------------~~~~~~~~~~~q~a~~~~L------~~~~~~~~~~~~~~~~~~~~l~~~L~ 385 (434)
+-. +. +....+.+.....++.+.+ ......+++..+++.++..++.+.|+
T Consensus 320 ~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~ 399 (993)
T PLN02414 320 MPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLK 399 (993)
T ss_pred CCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 310 00 0001111221111221111 11234577778888999999999998
Q ss_pred hCCCEeecCCeeEE--EeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 386 AVGFKVFPSSGTYF--VVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 386 ~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
+.|+++..+ .+| +.+.+ + +..++.++|.++ ||.+.
T Consensus 400 ~~G~~~~~~--~~f~~vt~~~---~--~~~~v~~~L~~~-gI~l~ 436 (993)
T PLN02414 400 KLGFQVQSL--PFFDTVKVKC---S--DADAIADAAAKV-GINLR 436 (993)
T ss_pred hcCCccCCC--CCcCeEEEec---C--CHHHHHHHHHHC-CCeeE
Confidence 889887533 222 12222 1 457788888654 98765
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-08 Score=108.14 Aligned_cols=281 Identities=14% Similarity=0.173 Sum_probs=168.6
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHHcC--CCCCCCCC-----CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 114 LGQGFPNFDGPDFVKDAAIQAIRDG--KNQYARGH-----GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 114 l~~g~p~~~~~~~v~~~~~~~~~~~--~~~Y~~~~-----G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
++.|+=+.-.|+.+.+.+ +++. ...|.|.+ |..+..-...+.+.+..| .+.. ++.+..+++++.+.+
T Consensus 81 ig~G~y~~~~P~vi~~~i---~~~~~~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG--~~~a-naSl~d~aTAa~ea~ 154 (954)
T PRK05367 81 IGQGYYGTHTPPVILRNI---LENPAWYTAYTPYQPEISQGRLEALLNFQTMVADLTG--LEIA-NASLLDEATAAAEAM 154 (954)
T ss_pred cCCCCCCCcCcHHHHHHH---HhCcchhhccCCCChHHHHHHHHHHHHHHHHHHHHHC--CChh-hccccccHHHHHHHH
Confidence 466733333344443333 2332 24566644 544444444444444445 4455 799999999999988
Q ss_pred HHHc-cCC--CCeEEEcCCCchhHHHH----HHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCC
Q 013883 187 ILGL-INP--GDEVILFAPFYDSYEAT----LSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMF 259 (434)
Q Consensus 187 ~~~l-~~~--gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~ 259 (434)
+.++ ..+ +|+|++++-.|+..... ++..|++++.++.+. |++ .+++.++++.+| |-+|.+.
T Consensus 155 ~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~-----d~~------~~~~~~vlvq~p-~~~G~i~ 222 (954)
T PRK05367 155 ALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK-----ALD------HDDVFGVLLQYP-GTSGEVR 222 (954)
T ss_pred HHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCcc-----CCC------cccEEEEEEecC-CCCeeec
Confidence 8776 344 48999999999987765 356899999998753 111 224545555565 7799987
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChh---hccccceeeeEEeChhhHHHH
Q 013883 260 TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKT---FSLTGWKIGWAIAPPHLTWGV 336 (434)
Q Consensus 260 ~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~---~g~~G~R~G~~~~~~~~~~~l 336 (434)
++++|+++|+++|+++++|.....+.. ...++..+-.+++++.-|. +|+.|.-+|++.+++++.+++
T Consensus 223 ---d~~~i~~~ah~~Gal~~vda~~~Al~~-------l~~pge~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~l 292 (954)
T PRK05367 223 ---DYTALIAAAHARGALVAVAADLLALTL-------LTPPGEMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSM 292 (954)
T ss_pred ---cHHHHHHHHHHcCCEEEEEehhhhccC-------CCChhhcCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhC
Confidence 478899999999999999874422211 1112333455778888886 123355599999987766544
Q ss_pred HH--H-----------------------hh-ccccCCchHH-HHHHHH--HHh-CChHHHHHHHHHHHHHHHHHHHHhhh
Q 013883 337 RQ--A-----------------------HS-FLTFATSTPM-QWAATA--ALR-APETYYEELKRDYSAKKAILVEGLNA 386 (434)
Q Consensus 337 ~~--~-----------------------~~-~~~~~~~~~~-q~a~~~--~L~-~~~~~~~~~~~~~~~~~~~l~~~L~~ 386 (434)
.. + ++ ..+.+.+... ..++.+ ++. .....++++.++...+.+++.+.|++
T Consensus 293 pgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~ 372 (954)
T PRK05367 293 PGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRA 372 (954)
T ss_pred CCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 10 0 00 0122222211 111111 111 23456788888889999999999988
Q ss_pred CCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEE
Q 013883 387 VGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVA 427 (434)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v 427 (434)
.|+++..+ .+|-.+.+. .+ .+..++.++|+++ ||.+
T Consensus 373 ~G~~~~~~--~~f~~~~~~-~~-~~~~~i~~~l~~~-gi~~ 408 (954)
T PRK05367 373 LGLEVVHD--SFFDTLTVE-VG-GDAAAVLARALAA-GINL 408 (954)
T ss_pred cCcccCCC--CCCCeEEEe-CC-CCHHHHHHHHHHC-Ccee
Confidence 88886533 222111111 12 2577888888765 8876
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-09 Score=104.72 Aligned_cols=210 Identities=18% Similarity=0.141 Sum_probs=57.9
Q ss_pred CCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCC------chhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccC
Q 013883 169 PEKEVTVTSGCTEAIAATILGLINPGDEVILFAPF------YDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKN 242 (434)
Q Consensus 169 ~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~------y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~ 242 (434)
.+ ..+++|+...|+.+++.++.. |.+|++..-. -+-..+++...|++++.|...+. -.+++++++|+++
T Consensus 62 Ae-aA~VvNnnaAAv~L~l~~la~-~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGttN~---t~~~Dye~AI~e~ 136 (367)
T PF03841_consen 62 AE-AALVVNNNAAAVLLALNTLAK-GKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTTNR---THLSDYEKAITEN 136 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc-ccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc---ccccccccccccc
Confidence 45 577888888999988888864 5677765432 22256778889999999987642 2478899999999
Q ss_pred CcEEEecCCCCCc--ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccc----cC-CCCccccCCCCCCCceEEEccCChh
Q 013883 243 TRAILMNTPHNPT--GKMFTREELNVIASLCIENDVLVFSDEVYDKLA----FE-MDHISIASLPGMYERTVTMNSLGKT 315 (434)
Q Consensus 243 ~~~i~~~~p~NPT--G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~----~~-~~~~~~~~~~~~~~~~i~i~S~SK~ 315 (434)
|.+++..++.|-. |..- .-.++++++++++|++++|+|-.-..+. |+ ...+.+..... .+-.+++.|-.|.
T Consensus 137 Ta~ll~Vh~Sn~~i~GFt~-~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~-~GaDlV~fSGdKl 214 (367)
T PF03841_consen 137 TAALLKVHTSNFRIQGFTG-EVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLA-AGADLVTFSGDKL 214 (367)
T ss_dssp -------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCC-CT-SEEEEETTSS
T ss_pred ccccccccccccccccccc-cccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhh-cCCCEEEEECCCc
Confidence 9999988887763 3321 1257889999999999999998764332 11 01223333332 2445888899999
Q ss_pred hccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC---h---------HHHHHHHHHHHHHHHHHHHH
Q 013883 316 FSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP---E---------TYYEELKRDYSAKKAILVEG 383 (434)
Q Consensus 316 ~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~---~---------~~~~~~~~~~~~~~~~l~~~ 383 (434)
+| |...|.+++++++++++++..-...+-..-....++.+.|+.. + ..+....+.++++.+.+.+.
T Consensus 215 LG--GPQaGiI~Gkk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~ 292 (367)
T PF03841_consen 215 LG--GPQAGIIVGKKELIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQ 292 (367)
T ss_dssp SS--S-S-EEEEEEHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH----------------------------------
T ss_pred CC--CCCeEEEEeCHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccc
Confidence 87 7789999999999999987766667777777777766666532 1 12334456677777777777
Q ss_pred hhhC
Q 013883 384 LNAV 387 (434)
Q Consensus 384 L~~~ 387 (434)
|+..
T Consensus 293 l~~~ 296 (367)
T PF03841_consen 293 LKAA 296 (367)
T ss_dssp ----
T ss_pred cccc
Confidence 7654
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.9e-08 Score=91.49 Aligned_cols=285 Identities=20% Similarity=0.213 Sum_probs=179.3
Q ss_pred HHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccC-----CCCeEEEcCCCc
Q 013883 130 AAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLIN-----PGDEVILFAPFY 204 (434)
Q Consensus 130 ~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~-----~gd~Vlv~~p~y 204 (434)
....++-.+...|....+...|.+++.+.++ -+ .++-+.-+..|-..++..+++ ||.+..+++..|
T Consensus 63 ~qwaamm~GDEAYagsrs~~~L~~avkdifG--------fq-~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~ 133 (471)
T COG3033 63 KQWAAMMRGDEAYAGSRSYYALADAVKDIFG--------FQ-YTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYH 133 (471)
T ss_pred HHHHHHhccchhhcccccHHHHHHHHHHhcC--------ce-eeeeccCCccHHHHHHHHHhhhccccCCccccccccce
Confidence 3334555667789999999999999888876 23 566676666666666665554 454555566666
Q ss_pred hh-HHHHHHHcCCEEEEEEcCCC---------CCCCCHHHHHhhccc----CCcEEEec-CCCCCcccCCCHHHHHHHHH
Q 013883 205 DS-YEATLSMAGAKIKCITLRPP---------DFAIPIEELKSTISK----NTRAILMN-TPHNPTGKMFTREELNVIAS 269 (434)
Q Consensus 205 ~~-~~~~~~~~G~~~~~v~~~~~---------~~~~d~~~l~~~i~~----~~~~i~~~-~p~NPTG~~~~~e~l~~i~~ 269 (434)
+. .....+..|+.++.++.++. .+.+|++.|++.|.+ +...|+++ +.|.--|...|.+.++++.+
T Consensus 134 FdTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ 213 (471)
T COG3033 134 FDTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYE 213 (471)
T ss_pred ecchhHHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHH
Confidence 55 44557788998888887641 256899999999976 34455443 44556688999999999999
Q ss_pred HHHHcCcEEEEcCcCC-cccc-----C--CCCccccCCCCC--CCceEEEccCChhhccccceeeeEEeChh----hHHH
Q 013883 270 LCIENDVLVFSDEVYD-KLAF-----E--MDHISIASLPGM--YERTVTMNSLGKTFSLTGWKIGWAIAPPH----LTWG 335 (434)
Q Consensus 270 la~~~~~~iI~Deay~-~~~~-----~--~~~~~~~~~~~~--~~~~i~i~S~SK~~g~~G~R~G~~~~~~~----~~~~ 335 (434)
+|++|++.++.|.+-. +-.| + -..+++..+... .--.-+..|.-|. |+.-. .|+++.+.+ +-..
T Consensus 214 ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD-~lvnm-GGfl~~~D~~~fDvy~~ 291 (471)
T COG3033 214 IAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKD-GLVNM-GGFLCFKDDSFFDVYEE 291 (471)
T ss_pred HHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeecccc-ceecc-ccEEEecCccHHHHHHH
Confidence 9999999999998632 1111 0 012233222100 0001233444453 33321 267776654 4444
Q ss_pred HHHHhh----cccc-CCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCC-
Q 013883 336 VRQAHS----FLTF-ATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPF- 407 (434)
Q Consensus 336 l~~~~~----~~~~-~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~- 407 (434)
++...- ..++ +...-...+++.-|.+. .+|+++... ..++|.+.|++.|++++.|.||.-+|++..++
T Consensus 292 ~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~~~yl~~Rv~----Qv~YL~~~l~~~GVpi~~paGGHavfvda~~~l 367 (471)
T COG3033 292 CRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVNFDYLAHRVA----QVQYLADGLEEAGVPIVQPAGGHAVFVDAGKFL 367 (471)
T ss_pred HHhheEeeccccccCcccchhHHHHHHHHHHhcCcHHHHHHHH----HHHHHHHHHHhcCCeeEecCCCceEEeehhhhc
Confidence 443221 1112 22333455666666653 466665444 45678889999999999999999888874221
Q ss_pred -----CCCCHHHHHHHHHHhcCeEEEC
Q 013883 408 -----GHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 408 -----~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
..-.+..|+..|..+.||-.+-
T Consensus 368 phip~eqFpaqala~ely~e~GiRavE 394 (471)
T COG3033 368 PHIPAEQFPAQALACELYKEAGIRAVE 394 (471)
T ss_pred CCCChhhCcHHHHHHHHHHHhCeeeee
Confidence 1224678888898999987653
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.7e-08 Score=92.09 Aligned_cols=300 Identities=15% Similarity=0.145 Sum_probs=182.0
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC---CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEE--cCChHH--
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYAR---GHGVPEFNSAIASRFKKDSGLEVDPEKEVTV--TSGCTE-- 181 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~--t~G~~~-- 181 (434)
...|.|+.-...+++.-....+.-..+. ..+-|.| .+|+.++...+.+||....|.+ .|.+ .+|++.
T Consensus 66 ~~m~PLGSCTMK~Np~~e~~~~~~p~f~-~iHP~~pe~~vqG~l~li~~Lq~~L~~ITG~D-----avsLQP~AGAqGE~ 139 (496)
T COG1003 66 RGMIPLGSCTMKLNPKAEMKPATWPEFA-NIHPFQPEEQVQGYLELIYELQEWLKEITGMD-----AVSLQPNAGAQGEY 139 (496)
T ss_pred cCccCCcccccccCchhhcccccccchh-hcCCCCChHHHHHHHHHHHHHHHHHHHhcCCc-----eeeccCCCCcchhh
Confidence 3567776665555553332222211111 1344555 3588899999999999888763 3333 345443
Q ss_pred HHHHHHHHc-cCC----CCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcc
Q 013883 182 AIAATILGL-INP----GDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTG 256 (434)
Q Consensus 182 ai~~~~~~l-~~~----gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG 256 (434)
+..+++++. -.. .+++++++-.+......+.+.|.+|+.|+.++ ++.+|+|+|++.+.+++.++.+++|+ -.|
T Consensus 140 aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~-~G~VDlddLk~k~~~~~AalMiTnPs-T~G 217 (496)
T COG1003 140 AGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKCDE-NGNVDLDDLRAKAEDNLAALMITNPS-TLG 217 (496)
T ss_pred HHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceEEEEecCC-CCCccHHHHHHHhccceeEEEeccCc-ccc
Confidence 223334444 222 36799999999988888999999999999986 78999999999999999999998873 345
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhh----ccccceeeeEEeChhh
Q 013883 257 KMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTF----SLTGWKIGWAIAPPHL 332 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~----g~~G~R~G~~~~~~~~ 332 (434)
+ =.+++++|+++.+++|-.+..|.|--.-..+-..+ .+.+.. ++=--+.|+| |-.|...|=+.+++++
T Consensus 218 v--FE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rP-----Gd~G~D-V~HlNLHKTF~iPHGGGGPG~GPvgVk~~L 289 (496)
T COG1003 218 V--FEEDIREICEIVHEAGGQVYYDGANLNAIVGLARP-----GDMGFD-VVHLNLHKTFCIPHGGGGPGAGPVGVKAHL 289 (496)
T ss_pred c--chhhHHHHHHHHHHcCCEEEecCcchhhhhccccc-----cccccc-eEEeecccccccCCCCCCCCCCceehHhhc
Confidence 3 36789999999999999999998864322221111 111222 2223455665 3345556666655444
Q ss_pred HHHHHH------Hhh--------------ccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEe
Q 013883 333 TWGVRQ------AHS--------------FLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKV 391 (434)
Q Consensus 333 ~~~l~~------~~~--------------~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 391 (434)
...+-. ... ...++.-.....+....+..+.+.+++..+...-+.+++.+.|+.. .+..
T Consensus 290 ~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~y~~~y 369 (496)
T COG1003 290 APFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGYYPVPY 369 (496)
T ss_pred cccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhcCcccc
Confidence 332211 000 0122323333444444444556678887777777889999999863 2222
Q ss_pred ecCC-eeEEEeeecCC----CCCCCHHHHHHHHHHhcCeE
Q 013883 392 FPSS-GTYFVVVDHTP----FGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 392 ~~~~-~~~~~~~~~~~----~~~~~~~~~~~~Ll~~~GV~ 426 (434)
.+.. -..=+.++..+ .|+ +..+++++|++ +|+.
T Consensus 370 ~~~~~~~HE~ild~r~l~~~~Gv-~~~DvAKrLlD-~GfH 407 (496)
T COG1003 370 TGENRVAHECILDARPLKKETGV-RALDVAKRLLD-YGFH 407 (496)
T ss_pred CCCCcceeEEEeechHhHhhcCC-cHHHHHHHHHh-cCCC
Confidence 2221 11112334332 244 57899999986 5864
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-06 Score=90.10 Aligned_cols=278 Identities=13% Similarity=0.126 Sum_probs=167.4
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccC--------------------------
Q 013883 139 KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLIN-------------------------- 192 (434)
Q Consensus 139 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~-------------------------- 192 (434)
...|....+...+.+.+.+++.+..|.+- . .=.+|+|+++|+..++....+
T Consensus 112 ~~~~e~SP~~t~lE~~vi~~la~l~G~~~--~-~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n 188 (608)
T TIGR03811 112 NVAYESSPATSQMEEEVGKEFATLMGYKN--G-WGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLN 188 (608)
T ss_pred CCccccCchHHHHHHHHHHHHHHHhCCCC--C-CeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcc
Confidence 34444444667899999999999998753 2 234678888877654433211
Q ss_pred --------------------------CCC------eEEEcCCCchhHHHHHHHcCC---EEEEEEcCCCCCCCCHHHHHh
Q 013883 193 --------------------------PGD------EVILFAPFYDSYEATLSMAGA---KIKCITLRPPDFAIPIEELKS 237 (434)
Q Consensus 193 --------------------------~gd------~Vlv~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~d~~~l~~ 237 (434)
+|. .++++.-.|..+...+..+|+ +++.||+++ ++.+|++.|++
T Consensus 189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~-~~rmd~~~L~~ 267 (608)
T TIGR03811 189 MPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDS-NYRMDINELEK 267 (608)
T ss_pred cccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCC-CCcCCHHHHHH
Confidence 000 477778889999999999999 589999985 78999999999
Q ss_pred hccc----C--CcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCc--EEEEcCcCCccc---c-CCC--Ccccc------
Q 013883 238 TISK----N--TRAILMNTPHNPTGKMFTREELNVIASLCIENDV--LVFSDEVYDKLA---F-EMD--HISIA------ 297 (434)
Q Consensus 238 ~i~~----~--~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~--~iI~Deay~~~~---~-~~~--~~~~~------ 297 (434)
.|.+ + +-+|+-+...-.+|.+=+.+++.+|++.++++|+ |+.+|.||+++. + +.. ..+..
T Consensus 268 ~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~ 347 (608)
T TIGR03811 268 IIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVH 347 (608)
T ss_pred HHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhccc
Confidence 8864 2 2334555668889988776665555555578898 699999999853 1 110 00000
Q ss_pred -------------------CCCCCCCceEEEccCChhhccccceeeeEEeCh-hhHHHHHHHhhcc--------------
Q 013883 298 -------------------SLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP-HLTWGVRQAHSFL-------------- 343 (434)
Q Consensus 298 -------------------~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~-~~~~~l~~~~~~~-------------- 343 (434)
.+.+...-.=+...+.|.+. .-...|.++.+. ++.+.+.....+.
T Consensus 348 ~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~-~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~ 426 (608)
T TIGR03811 348 AEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGY-IPYSAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAY 426 (608)
T ss_pred ccccccccccccccHhHHHHHhcCcCceEEEeCcccccc-cCCCeEEEEEeCHHHHHHHhcCcchhccccccCccccccc
Confidence 01111111224457889876 456788777764 3333221100000
Q ss_pred ccCCchHH-----HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC-------CEe---ecCCeeEEEeeecCCCC
Q 013883 344 TFATSTPM-----QWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG-------FKV---FPSSGTYFVVVDHTPFG 408 (434)
Q Consensus 344 ~~~~~~~~-----q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-------~~~---~~~~~~~~~~~~~~~~~ 408 (434)
....+.+. .+++...+.-..+.+.++.++..+.++.+.+.|++.+ +++ .+|+-++.+|. +.+.+
T Consensus 427 ~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~Fr-~~~~g 505 (608)
T TIGR03811 427 ILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDYV-FNEKG 505 (608)
T ss_pred ceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEEE-EecCC
Confidence 11122222 2233333322456678888888888999988887742 443 45666665544 33334
Q ss_pred CCC---HHHHHHHHHHh
Q 013883 409 HET---DIAFCEYLIKE 422 (434)
Q Consensus 409 ~~~---~~~~~~~Ll~~ 422 (434)
..+ ..++-+++.++
T Consensus 506 ~~~l~~~n~ln~~i~~~ 522 (608)
T TIGR03811 506 NDDLVKMNKLNHAFYDY 522 (608)
T ss_pred CccHHHHHHHHHHHHHh
Confidence 321 33455555554
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.3e-08 Score=89.06 Aligned_cols=251 Identities=13% Similarity=0.117 Sum_probs=154.1
Q ss_pred cEEEcCChHHHHHHHHHHcc--CCCCeEEEcCCCchhHHHHH-HHc------C-----CEEEEEEcCCCC----C-----
Q 013883 172 EVTVTSGCTEAIAATILGLI--NPGDEVILFAPFYDSYEATL-SMA------G-----AKIKCITLRPPD----F----- 228 (434)
Q Consensus 172 ~i~~t~G~~~ai~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~-~~~------G-----~~~~~v~~~~~~----~----- 228 (434)
-++++|+++||..++++... .....|++.+..|++|.... +.. | -+.+.|..-++- +
T Consensus 104 vc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~ 183 (452)
T KOG1403|consen 104 VCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMY 183 (452)
T ss_pred EEEEecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccC
Confidence 67889999999999987653 23334666666777664431 110 1 122222111110 0
Q ss_pred ------CCCHHHHHhhccc------CCcEEEecCCCCCcccCCCH-HHHHHHHHHHHHcCcEEEEcCcCCccccCCCCc-
Q 013883 229 ------AIPIEELKSTISK------NTRAILMNTPHNPTGKMFTR-EELNVIASLCIENDVLVFSDEVYDKLAFEMDHI- 294 (434)
Q Consensus 229 ------~~d~~~l~~~i~~------~~~~i~~~~p~NPTG~~~~~-e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~- 294 (434)
..=.|.+++.+++ +..+.+-.+-+.-.|.++|+ ...+++++..+.+|-+.|.||++.+|..-|.+.
T Consensus 184 ~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyW 263 (452)
T KOG1403|consen 184 PDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYW 263 (452)
T ss_pred CcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhh
Confidence 0112334443322 23333444446666765554 559999999999999999999999987655443
Q ss_pred cccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHH--HhhccccCCchHHHHHHHHHHhCChHHHHHHHHH
Q 013883 295 SIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQ--AHSFLTFATSTPMQWAATAALRAPETYYEELKRD 372 (434)
Q Consensus 295 ~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~--~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~ 372 (434)
++... +-+--|-++.|.+| .|..++.+++.+++.+.+.. +..+.+|+.++.+.++..++|+..++ +++.+.
T Consensus 264 afq~y----~fiPDIVtmgKpmG-NGhPVa~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~--E~Lq~h 336 (452)
T KOG1403|consen 264 AFQTY----NFIPDIVTMGKPMG-NGHPVAAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCED--ENLQEH 336 (452)
T ss_pred hhhhh----ccccchheecccCC-CCCeeeEEeccHHHHHHhccccceehhccCCCchhHHHHHHHHHHHhh--hhHHHH
Confidence 32222 22223678899999 99999999999999888754 44456889999999999888886421 334444
Q ss_pred HHHHHHHHHHHhhhCC--CEee--cCCeeEEEeeecCCCC------CCCHHHHHHHHHHhcCeEEEC
Q 013883 373 YSAKKAILVEGLNAVG--FKVF--PSSGTYFVVVDHTPFG------HETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 373 ~~~~~~~l~~~L~~~g--~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~Ll~~~GV~v~p 429 (434)
..+.-+.|...|+++. .+++ ....|.|+-+++.+.. ...+..++.+|.+.+||++..
T Consensus 337 a~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsa 403 (452)
T KOG1403|consen 337 AQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSA 403 (452)
T ss_pred HHHHHHHHHHHHHHHhhhccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEec
Confidence 4555555655555542 3333 2345777777764321 112334667787888898864
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-06 Score=82.28 Aligned_cols=262 Identities=16% Similarity=0.246 Sum_probs=162.2
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHHcC--CCCCCCCC-----CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 114 LGQGFPNFDGPDFVKDAAIQAIRDG--KNQYARGH-----GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 114 l~~g~p~~~~~~~v~~~~~~~~~~~--~~~Y~~~~-----G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
+|.|+=+.-.|+.+.+.+ +++. ...|.|.+ |..+..=..+..+....|.++. +--+--+++.+-+++
T Consensus 80 iG~GyY~~~~P~vI~rni---le~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VA---NASm~DeaTAaAEAm 153 (450)
T COG0403 80 IGAGYYDTYTPPVILRNI---LENPEWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVA---NASMLDEATAAAEAM 153 (450)
T ss_pred ccCcccCCcCcHHHHHHh---hcCccccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCcc---cchhhhhHHHHHHHH
Confidence 467754445566555333 3332 24577754 4333333334444445566654 334455666666655
Q ss_pred HHHc---cCCCCeEEEcCCCchhHHHHHHH----cCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCC
Q 013883 187 ILGL---INPGDEVILFAPFYDSYEATLSM----AGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMF 259 (434)
Q Consensus 187 ~~~l---~~~gd~Vlv~~p~y~~~~~~~~~----~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~ 259 (434)
+.+. ..+..+++|+.-.|+.+.+.++. +|.+++.++.+ |++.+++....++.++++..|+ -.|..
T Consensus 154 ~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~------d~~~l~~~~~~~~~gv~vQyP~-~~G~~- 225 (450)
T COG0403 154 LMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD------DLDDLESADDGDVFGVLVQYPN-TFGIV- 225 (450)
T ss_pred HHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc------hhhhhhhccccCeEEEEEecCC-CCCcc-
Confidence 5554 23358999999999999888764 56777777665 7888888832377889988885 56633
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEcc---CChhhccccceeeeEEeChhhHHH-
Q 013883 260 TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNS---LGKTFSLTGWKIGWAIAPPHLTWG- 335 (434)
Q Consensus 260 ~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S---~SK~~g~~G~R~G~~~~~~~~~~~- 335 (434)
.+++++|.+.+++++.++++ +.+. -...+..-++..+-.|++++ |.=-+|..|..+||+.+.+++.++
T Consensus 226 -~~d~~~l~~~~h~~~al~~v---~aDp----laL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~m 297 (450)
T COG0403 226 -EEDLRALIEAAHSAGALVIV---AADP----LALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQM 297 (450)
T ss_pred -chhHHHHHHHHhhcCCEEEE---Eech----hHhhccCCccccCCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcC
Confidence 34799999999999998887 2211 12234444555566677765 555567678899999987766442
Q ss_pred ---------------------------HHHHhhccccCCchHHH--HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh
Q 013883 336 ---------------------------VRQAHSFLTFATSTPMQ--WAATAALRAPETYYEELKRDYSAKKAILVEGLNA 386 (434)
Q Consensus 336 ---------------------------l~~~~~~~~~~~~~~~q--~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~ 386 (434)
+++-+...+.|.+.... .++..+.-.+.+.++++..+..+...++.+.|++
T Consensus 298 PGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~ 377 (450)
T COG0403 298 PGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKE 377 (450)
T ss_pred CCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222222233332221 1222222235677899999999999999999996
Q ss_pred C--CCEeecCCeeEE
Q 013883 387 V--GFKVFPSSGTYF 399 (434)
Q Consensus 387 ~--g~~~~~~~~~~~ 399 (434)
. |+++... .||
T Consensus 378 ~~~g~~~~~~--~fF 390 (450)
T COG0403 378 IGAGVELVFD--HFF 390 (450)
T ss_pred cCCceEeccc--cce
Confidence 5 5776544 444
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.7e-07 Score=95.30 Aligned_cols=283 Identities=13% Similarity=0.194 Sum_probs=165.0
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHcC--CCCCCCCC-----CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 115 GQGFPNFDGPDFVKDAAIQAIRDG--KNQYARGH-----GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 115 ~~g~p~~~~~~~v~~~~~~~~~~~--~~~Y~~~~-----G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+.|+=+.-.|+.+.+.+. .+. ...|.|.+ |..+..=.....+.+..|.++. +.-+..+++++.++++
T Consensus 70 g~G~y~~~~p~~i~r~v~---~~p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtGm~~a---NaSl~d~atA~aEa~~ 143 (939)
T TIGR00461 70 GMGYYGTILPPVIQRNLL---ENPGWYTAYTPYQPEISQGRLEALLNFQTVVSDLTGLPVA---NASLLDEGTAAAEAMA 143 (939)
T ss_pred CCCcCCCcCChHHHHHHH---hCchhhhcCCCCChhhhhHHHHHHHHHHHHHHHHHCCChh---hhhccchhhHHHHHHH
Confidence 667333334555554332 332 24566644 5444444445555555565543 5667777788777666
Q ss_pred HHcc---CCCCeEEEcCCCchhHHHHHH----HcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCC
Q 013883 188 LGLI---NPGDEVILFAPFYDSYEATLS----MAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFT 260 (434)
Q Consensus 188 ~~l~---~~gd~Vlv~~p~y~~~~~~~~----~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~ 260 (434)
.+.. +++++|+|++-.|+.+...++ ..|.+++.++ ++++++.+ ++.++++.+| |-+|.+-
T Consensus 144 ~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~---------~~~l~~~~--~~~~v~~q~P-n~~G~ie- 210 (939)
T TIGR00461 144 LSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD---------CSDIKKAV--DVFGCLLQYP-ATDGSIL- 210 (939)
T ss_pred HHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc---------HHHHhhcC--CEEEEEEECC-CCCeEEe-
Confidence 6542 234899999999988876655 6888888773 44566555 5677778788 5678775
Q ss_pred HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEc---cCChhhccccceeeeEEeChhhHHHH-
Q 013883 261 REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMN---SLGKTFSLTGWKIGWAIAPPHLTWGV- 336 (434)
Q Consensus 261 ~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~---S~SK~~g~~G~R~G~~~~~~~~~~~l- 336 (434)
++++|+++++++|.+++++.--..+ .+..-++..+-.|+++ +|+=-+|..|.-.|++.+++++.+++
T Consensus 211 --d~~~i~~~~h~~gal~~~~ad~~al-------~ll~~Pge~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lP 281 (939)
T TIGR00461 211 --DYKQLIDALHSHKSLVSVAADLMAL-------TLLTPPGHYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMP 281 (939)
T ss_pred --cHHHHHHHHHHcCCEEEEEechHHh-------CCcCCHHHcCCcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCC
Confidence 6889999999999999984422211 1111222223334443 23332333465678887766554432
Q ss_pred ---------------------------HHHhhccccCCchHHHH-HHHH-HHhCChHHHHHHHHHHHHHHHHHHHHhhhC
Q 013883 337 ---------------------------RQAHSFLTFATSTPMQW-AATA-ALRAPETYYEELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 337 ---------------------------~~~~~~~~~~~~~~~q~-a~~~-~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (434)
++.+...+.+.+..... ++.. +.-...+.++++.++...+..++.+.|++.
T Consensus 282 grivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~ 361 (939)
T TIGR00461 282 GRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEND 361 (939)
T ss_pred CCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11111111222222211 1122 223356678888888999999999999999
Q ss_pred CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 388 GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
|+++..+ .||--+.+. .+..+..++.++|+++ ||.+..
T Consensus 362 G~~~~~~--~fF~~~~v~-~~~~~~~~i~~~~~~~-gi~l~~ 399 (939)
T TIGR00461 362 PHELINK--TWFDTLTVK-VGNGISSELLKAAEEF-NINLRA 399 (939)
T ss_pred CCcccCC--CccceEEEE-eCCCCHHHHHHHHHHC-CCeeee
Confidence 9887654 444222221 1212467888888665 998764
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.8e-07 Score=86.81 Aligned_cols=268 Identities=15% Similarity=0.165 Sum_probs=169.7
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc----C-CC---CeEEEcCCCchhHHHHHHHcCCEE
Q 013883 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI----N-PG---DEVILFAPFYDSYEATLSMAGAKI 218 (434)
Q Consensus 147 G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~----~-~g---d~Vlv~~p~y~~~~~~~~~~G~~~ 218 (434)
+..++..+....+...++.+-+ . .=..|.|+++++.++-.... . .| ..++.+...+..+......++.++
T Consensus 117 ~~~~~e~~~Vnm~~~L~~~~~~-~-~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l 194 (491)
T KOG1383|consen 117 VVRKLEAECVNMIANLFNAPSD-S-CGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVEL 194 (491)
T ss_pred hhHHHHHHHHHHHHHHhcCCcc-c-cCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEE
Confidence 4567888888888877765522 2 34668899999666544331 1 22 357777778888888999999999
Q ss_pred EEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHH-cCcEEEEcCcCCccccC--CCCcc
Q 013883 219 KCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIE-NDVLVFSDEVYDKLAFE--MDHIS 295 (434)
Q Consensus 219 ~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~-~~~~iI~Deay~~~~~~--~~~~~ 295 (434)
..||+++.++.+|+..+.+.+++++..++..-|+-|+|. .|++++|.++..+ +++.+.+|.+-++|.-- .....
T Consensus 195 ~~V~~~~~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~---~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~ 271 (491)
T KOG1383|consen 195 REVPLDEGDYRVDPGKVVRMIDENTIMLVGSLPNFPTGE---IEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEE 271 (491)
T ss_pred EeeeccccceEecHHHHHHHhccceEEEEEEcCCCCccc---hhhHHHHHHHHHHHhCCceeecccCccccccccccCcc
Confidence 999999888999999999999999999999999999995 4689999999998 99999999999988642 11000
Q ss_pred ccCCCCCCCceEEEc-cCChhhccccceeeeEEeCh-hhH-HHH-------HHHhhccccCCchHH---HHHHHHHHhCC
Q 013883 296 IASLPGMYERTVTMN-SLGKTFSLTGWKIGWAIAPP-HLT-WGV-------RQAHSFLTFATSTPM---QWAATAALRAP 362 (434)
Q Consensus 296 ~~~~~~~~~~~i~i~-S~SK~~g~~G~R~G~~~~~~-~~~-~~l-------~~~~~~~~~~~~~~~---q~a~~~~L~~~ 362 (434)
-..+.. ..|-.+. +-.| ||+.--..||++-.. ++. .++ -......+.+.+.++ ...-++++.-+
T Consensus 272 ~fdFr~--p~V~Sisa~~HK-YGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG 348 (491)
T KOG1383|consen 272 EFDFRV--PGVTSISADGHK-YGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLG 348 (491)
T ss_pred ccccCC--CCceeEeeccce-eeeeecCcEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhh
Confidence 111110 1122222 2223 455444478887542 221 111 111111122222222 22223445545
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhC-CCEee-cCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEE
Q 013883 363 ETYYEELKRDYSAKKAILVEGLNAV-GFKVF-PSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVA 427 (434)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v 427 (434)
++.+.+.-+++.+....+++.+++. +++++ +|.-.+..| +-. .. +-.++...|. +.|..+
T Consensus 349 ~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~-~s~--~~-~i~elsd~l~-~~GW~l 410 (491)
T KOG1383|consen 349 EEGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILF-GSN--DV-NIFELSDLLR-KKGWIL 410 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEc-cCC--cc-chhhhhHHHH-hcCcCc
Confidence 5566667777888899999999986 56655 344443332 211 11 3446666554 446654
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.3e-07 Score=82.12 Aligned_cols=287 Identities=18% Similarity=0.173 Sum_probs=172.4
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHc---C----CCC-CCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRD---G----KNQ-YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~---~----~~~-Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
++|-|..+..+..++....+..+.+..+ . ++. -.+. .++-+.+...+....|. .+. +++++.+.+-
T Consensus 31 ~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W---~~lp~~lgdklApLiGA--~~~-Evvv~dtts~ 104 (407)
T COG3844 31 GVIYLDGNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADW---FDLPERLGDKLAPLIGA--RAG-EVVVTDTTSI 104 (407)
T ss_pred CeEEeeccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCch---hhchhHHHHHhhhhhcC--CCC-ceEEeCCcch
Confidence 6788876655544444444333333322 1 111 1222 33444455555555554 344 8999999998
Q ss_pred HHHHHHHHcc--CCCCeEEEcCCCchh-----HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCC
Q 013883 182 AIAATILGLI--NPGDEVILFAPFYDS-----YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNP 254 (434)
Q Consensus 182 ai~~~~~~l~--~~gd~Vlv~~p~y~~-----~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NP 254 (434)
.++..+.+.+ ++|++|++++-.-++ ....++..|.. ++ -...+.++.+++++++++.+|++++.+.-
T Consensus 105 nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~-----~~-~~~~~~P~~~~~~~~dd~AvV~L~~V~y~ 178 (407)
T COG3844 105 NLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG-----YD-LEGVIAPRALEEAITDDVAVVLLSHVNYK 178 (407)
T ss_pred HHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc-----cc-ceeeeChHHHHHhhccceEEEEecccccc
Confidence 8888887775 458999997654332 23344444433 11 02344677999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhc-cccceeeeEEeChhhH
Q 013883 255 TGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIAPPHLT 333 (434)
Q Consensus 255 TG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~~~~~~ 333 (434)
||..+ ++.+|-+++++|+++++.|-+++...+.- .+. ..+-.+-|++--|.+. -||-..|..+.+ +..
T Consensus 179 TGql~---dm~aiT~~AH~~galv~wDLAHsaGavp~---~Lh----~~gaDfaigcsyKYLNgGPGapa~l~v~~-~h~ 247 (407)
T COG3844 179 TGQLL---DMRAITALAHQHGALVGWDLAHSAGAVPV---DLH----AAGADFAIGCSYKYLNGGPGAPAGLFVAP-RHR 247 (407)
T ss_pred cccee---eHHHHHHHHHhcCceEEeehhcccCCcce---eec----ccCCCeeeeeeceeccCCCCCceeEEecc-ccc
Confidence 99998 67889999999999999999998743321 111 1234567888888883 255444444433 222
Q ss_pred HHH-----------------------HHHhhccccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhC--
Q 013883 334 WGV-----------------------RQAHSFLTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAV-- 387 (434)
Q Consensus 334 ~~l-----------------------~~~~~~~~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-- 387 (434)
+.. ..+.++...+.+..+..++..+|+-. +-.+.++|++-....+++.+.++..
T Consensus 248 e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~ 327 (407)
T COG3844 248 ERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCE 327 (407)
T ss_pred cccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccc
Confidence 111 01122223344555555555555532 1125667777777778888877653
Q ss_pred --CCEeecC-----CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 388 --GFKVFPS-----SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 388 --g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
++.+..| .|+... +.++ ...++++.|.++ ||.
T Consensus 328 ~~~l~l~tPr~~~~rGsqvS-~~hp-----~~~~V~qaLi~r-GVi 366 (407)
T COG3844 328 YYGLTLVTPRAHEERGSQVS-LYHP-----HGYQVMQALIDR-GVI 366 (407)
T ss_pred cCCcEEeccchhhhccceee-EecC-----cHHHHHHHHHHc-Ccc
Confidence 6666654 234332 3232 477888888765 986
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.1e-07 Score=83.96 Aligned_cols=243 Identities=15% Similarity=0.107 Sum_probs=152.3
Q ss_pred cEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHH-HHHHHcCCE---------EEEEEcCCCCCCCCHHHHHhhccc
Q 013883 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYE-ATLSMAGAK---------IKCITLRPPDFAIPIEELKSTISK 241 (434)
Q Consensus 172 ~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~-~~~~~~G~~---------~~~v~~~~~~~~~d~~~l~~~i~~ 241 (434)
+|.--+| +-|..++..+++.|+|+|.-.+.-..+|. +....-+-+ -.++.+++.++-+|.|.||+....
T Consensus 109 NVQp~SG-SPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~ 187 (477)
T KOG2467|consen 109 NVQPYSG-SPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATL 187 (477)
T ss_pred eeccCCC-CchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHh
Confidence 3444455 66777789999999999885443333221 111111111 122334566788999999987655
Q ss_pred -CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCC-ccccCCCCccccCCCCCCCceEEEccCChhhccc
Q 013883 242 -NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYD-KLAFEMDHISIASLPGMYERTVTMNSLGKTFSLT 319 (434)
Q Consensus 242 -~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~-~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 319 (434)
++|+|+--.-..+ ..+ +.+++.++|.+.|.+++.|.++. +++-.+.-++.... ..|+..+-.|.+ -
T Consensus 188 frPk~iiaG~SaY~--R~~---DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey-----~DiVTTTTHKsL--R 255 (477)
T KOG2467|consen 188 FRPKLIIAGTSAYS--RLI---DYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY-----CDIVTTTTHKSL--R 255 (477)
T ss_pred cCCcEEEeccccch--hhc---cHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc-----cceeeccccccc--c
Confidence 7888775322222 333 45667778889999999999985 33322222221111 237778889986 6
Q ss_pred cceeeeEEeCh-----------hhH----HHHHHHhhc-cccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHH
Q 013883 320 GWKIGWAIAPP-----------HLT----WGVRQAHSF-LTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVE 382 (434)
Q Consensus 320 G~R~G~~~~~~-----------~~~----~~l~~~~~~-~~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~ 382 (434)
|.|.|.+.-.+ ++. +.++..-.. ...++......+++.+|+.. ...+++...+..++.+.|.+
T Consensus 256 GPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~ 335 (477)
T KOG2467|consen 256 GPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALAS 335 (477)
T ss_pred CCcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 99999888543 111 222211111 12344444566666777753 23356667788889999999
Q ss_pred HhhhCCCEeecC-CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 383 GLNAVGFKVFPS-SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 383 ~L~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
.|.+.|++++.. ..+..+.+++.+.|. +-.-++++++..+|.+.-
T Consensus 336 ~l~~~Gy~lvtgGTDnHlvLvDLr~~G~--dGarvE~vle~~~I~~NK 381 (477)
T KOG2467|consen 336 ALISRGYKLVTGGTDNHLVLVDLRPKGV--DGARVEKVLELCHIALNK 381 (477)
T ss_pred HHHHcCceEecCCccceEEEEeccccCC--chHHHHHHHHHhhhhhcC
Confidence 999999998753 467788899988876 335677888877776543
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-06 Score=86.17 Aligned_cols=224 Identities=19% Similarity=0.241 Sum_probs=129.5
Q ss_pred CCCCC-----CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc---cCCCCeEEEcCCCchhHHHHH
Q 013883 140 NQYAR-----GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL---INPGDEVILFAPFYDSYEATL 211 (434)
Q Consensus 140 ~~Y~~-----~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l---~~~gd~Vlv~~p~y~~~~~~~ 211 (434)
..|.| .+|..+..-.....+.+..|.++. +.-+-.|++.+-++++.+. .+.+++|+++.-.++.+...+
T Consensus 95 TaYtPYQpEisQG~Lq~lfe~Qs~i~eLTGmdva---NaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~ 171 (429)
T PF02347_consen 95 TAYTPYQPEISQGRLQALFEYQSMICELTGMDVA---NASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVL 171 (429)
T ss_dssp CS-STTSGGGBHHHHHHHHHHHHHHHHHHTSSEE----SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHHHhhCCCcc---CCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHH
Confidence 45666 346555555566666666676542 2345567676666555443 233469999999999988765
Q ss_pred HH----cCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCcc
Q 013883 212 SM----AGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKL 287 (434)
Q Consensus 212 ~~----~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~ 287 (434)
+. .|.+++.++.++ +...| ++++.+|++.+|| -.|.+- ++++|.++++++|.++++ .+ ..+
T Consensus 172 ~t~a~~~g~~iv~~~~~~-~~~~d--------~~~~a~v~vq~Pn-~~G~~e---d~~~i~~~~h~~gal~~~-~a-d~~ 236 (429)
T PF02347_consen 172 RTYAAPLGIEIVEVPLDE-DGTTD--------DDDTAAVMVQNPN-TFGVFE---DIKEIADIAHAAGALVIV-GA-DPN 236 (429)
T ss_dssp HHHCCHCCEEEEEE-BBT-TCSB---------STTEEEEEEESS--TTSB-----THHHHHHHHHHTT-EEEE-CG-GCC
T ss_pred HHhhhhCCeEEEEecccc-cCCcc--------ccCeEEEEeecCC-CCceEe---eHHHHHHHHHHcCCEEEE-ec-CHH
Confidence 54 788999998875 33333 5688999999995 577764 488999999999999886 22 121
Q ss_pred ccCCCCccccCCCCCCCceEEEccCChhh----ccccceeeeEEeChhhHHHH---------------------------
Q 013883 288 AFEMDHISIASLPGMYERTVTMNSLGKTF----SLTGWKIGWAIAPPHLTWGV--------------------------- 336 (434)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~i~S~SK~~----g~~G~R~G~~~~~~~~~~~l--------------------------- 336 (434)
.. .+..-++..+-.|++++ +|.| |..|.-+|++.++++++.++
T Consensus 237 aL-----~~l~~Pge~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQH 310 (429)
T PF02347_consen 237 AL-----GGLKSPGEYGADIVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQH 310 (429)
T ss_dssp GC-----CTC--GGGGT-SEEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCH
T ss_pred HH-----hCcCChhhcCccEEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeecccccccc
Confidence 11 12222333344455654 5555 44577789999887765432
Q ss_pred -HHHhhccccCCchHH--HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC
Q 013883 337 -RQAHSFLTFATSTPM--QWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 337 -~~~~~~~~~~~~~~~--q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (434)
++-+...+.|.+... ..++..+...+.+.++++.++...+..++.+.|++.
T Consensus 311 IrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~ 364 (429)
T PF02347_consen 311 IRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI 364 (429)
T ss_dssp HHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222233333332 223333333456789999999999999999999986
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00017 Score=77.75 Aligned_cols=282 Identities=15% Similarity=0.170 Sum_probs=160.0
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHHcC--CCCCCCCC-----CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 113 NLGQGFPNFDGPDFVKDAAIQAIRDG--KNQYARGH-----GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 113 ~l~~g~p~~~~~~~v~~~~~~~~~~~--~~~Y~~~~-----G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
-+|.|+=+.-.|+.+.+.+ +.++ ...|.|.+ |..+..=..+..+....|.++.. --+--|++.+-++
T Consensus 83 fiG~G~y~~~~P~vi~~~i---~~~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~vaN---ASl~D~atA~aEA 156 (954)
T PRK12566 83 LIGMGYHGTVTPTVILRNV---LENPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLAN---ASLLDEATAAAEA 156 (954)
T ss_pred cccccccCCcCcHHHHHHH---HhCchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchhhh---hhhccchhHHHHH
Confidence 3566754444556554333 3332 24566644 44343334444455555665542 2233344444443
Q ss_pred HHHHc---cCCCCeEEEcCCCchhHHHHHH----HcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccC
Q 013883 186 TILGL---INPGDEVILFAPFYDSYEATLS----MAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKM 258 (434)
Q Consensus 186 ~~~~l---~~~gd~Vlv~~p~y~~~~~~~~----~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~ 258 (434)
++.+. -.+..+|+|++-.++.+..+++ ..|++++. +++++.+..++.++++.+|+ -.|.+
T Consensus 157 ~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~------------~~~~~~~~~~~~~v~vq~P~-~~G~i 223 (954)
T PRK12566 157 MALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV------------DAVDNLAAHAVFGALLQYPD-THGEI 223 (954)
T ss_pred HHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE------------cchhhcCCCCEEEEEEECCC-CceEE
Confidence 33332 2224689999999998877654 46666663 23444555577888888884 57877
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEc---cCChhhccccceeeeEEeChhhHHH
Q 013883 259 FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMN---SLGKTFSLTGWKIGWAIAPPHLTWG 335 (434)
Q Consensus 259 ~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~---S~SK~~g~~G~R~G~~~~~~~~~~~ 335 (434)
+++++|.++++++|.++|+ .+ ..+ ...+..-++..+-.|.++ +|.=-+|..|.-.||+.+.+++..+
T Consensus 224 ---~d~~~i~~~~h~~gal~~~-~~-d~l-----aL~ll~~Pge~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~ 293 (954)
T PRK12566 224 ---RDLRPLIDQLHGQQALACV-AA-DLL-----SLLVLTPPGELGADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRA 293 (954)
T ss_pred ---ccHHHHHHHHHHcCCEEEE-Ee-CHH-----HHhCCCChhhcCCcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhh
Confidence 4688899999999998774 11 111 112222344444455554 5676677778889999987766542
Q ss_pred H----------------------------HHHhhccccCCchHHHHHH--HHHHhCChHHHHHHHHHHHHHHHHHHHHhh
Q 013883 336 V----------------------------RQAHSFLTFATSTPMQWAA--TAALRAPETYYEELKRDYSAKKAILVEGLN 385 (434)
Q Consensus 336 l----------------------------~~~~~~~~~~~~~~~q~a~--~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~ 385 (434)
+ ++-+...+.|.+....+.+ ..+.-.+.+.++++.++...+..++.+.|.
T Consensus 294 ~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~ 373 (954)
T PRK12566 294 MPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLE 373 (954)
T ss_pred CCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222222233332222222 222233566788888888999999999999
Q ss_pred hCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 386 AVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
+.|+++... .||--+.+. .+. ...++.++.++ .||-++
T Consensus 374 ~~g~~~~~~--~fF~~~~v~-~~~-~~~~~~~~a~~-~~~n~r 411 (954)
T PRK12566 374 AKGIKRLNR--HFFDTLTLE-VGG-AQAAIIESAEA-ARINLR 411 (954)
T ss_pred hcCCccccC--CccceEEEE-ccC-CHHHHHHHHHH-CCCeeE
Confidence 999887533 444322221 121 35566665544 476554
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.5e-05 Score=73.29 Aligned_cols=182 Identities=14% Similarity=0.117 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH-HHHHHHHHcc--CCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcC--
Q 013883 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE-AIAATILGLI--NPGDEVILFAPFYDSYEATLSMAGAKIKCITLR-- 224 (434)
Q Consensus 150 ~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~-ai~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~-- 224 (434)
.|...++..+-+..|..- .+ ..++.+.+|. .+.+.+.++. ..++.|+.+.-.+......+..+|++++.||..
T Consensus 56 ~ltn~l~~d~~~~~G~~~-~~-~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~ 133 (389)
T PF05889_consen 56 KLTNSLVLDALRLAGLRS-VK-SCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLE 133 (389)
T ss_dssp HHHHHHHHHHHHHTTHTT-HC-EEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEE
T ss_pred HHHHHHHHHHHHHcCCcc-cc-ceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCC
Confidence 344444444545566532 22 4566655553 5566666664 456899999988888888889999999999853
Q ss_pred CCCCCCCHHHHHhhccc---CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCC--
Q 013883 225 PPDFAIPIEELKSTISK---NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASL-- 299 (434)
Q Consensus 225 ~~~~~~d~~~l~~~i~~---~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~-- 299 (434)
++....|++.+++.+++ +..+.+++++..-.|... +++++|+++|++||+..|+-.||.-=.. .-...+
T Consensus 134 ~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~--D~i~~IakiC~~~~IPhlvNnAYgvQ~~----~~~~~i~~ 207 (389)
T PF05889_consen 134 GDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLP--DDIEEIAKICKEYDIPHLVNNAYGVQSS----KCMHLIQQ 207 (389)
T ss_dssp TTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTTT-H----HHHHHHHH
T ss_pred CCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCC--ccHHHHHHHHHHcCCceEEccchhhhHH----HHHHHHHH
Confidence 22334567888887754 445667777765556554 3599999999999999999999975110 000000
Q ss_pred -CCCCCceEEEccCChhhccccceeeeEEeC-hhhHHHHHHHh
Q 013883 300 -PGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAH 340 (434)
Q Consensus 300 -~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~l~~~~ 340 (434)
...+.-.+.++|.-|+|= -+..-+.+.++ +..+..+.+..
T Consensus 208 a~~~GRvda~vqS~dkNF~-VPvGgai~As~~~~~i~~vs~~Y 249 (389)
T PF05889_consen 208 AWRVGRVDAFVQSTDKNFM-VPVGGAIMASFDPSGILAVSKEY 249 (389)
T ss_dssp HHHHSTCSEEEEEHHHHHC-EESSHEEEEESSHHHHHHHHHTS
T ss_pred HHhcCCcceeeeecCCCEE-ecCCCcEEEecCHHHHHHHHHHh
Confidence 000122378999999993 44433444444 55666665543
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00047 Score=65.76 Aligned_cols=295 Identities=14% Similarity=0.124 Sum_probs=161.2
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHc-CCCCCCC------CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRD-GKNQYAR------GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~-~~~~Y~~------~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
...||+.| |.-. |+.+++.+++.+.+ ...+++- ..-..++.+...+.+.+.++++-+.+ -+++-.|++..
T Consensus 5 ~~~nFsaG-Pa~l-p~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~-VlflqGGat~q 81 (365)
T COG1932 5 RVYNFSAG-PAAL-PPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYK-VLFLQGGATGQ 81 (365)
T ss_pred CCCCCCCC-cccC-CHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCce-EEEEcCccHHH
Confidence 45688877 3322 44444444444333 1111111 11124555666667777778765554 45556778888
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHH-HHHHHcCC--EEEEEEcCCCC--CCCCHHHHHhhcccCCcEEEecCCCCCccc
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYE-ATLSMAGA--KIKCITLRPPD--FAIPIEELKSTISKNTRAILMNTPHNPTGK 257 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~-~~~~~~G~--~~~~v~~~~~~--~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~ 257 (434)
+..+...++..+..-++..-.|.... .-++..+- ++........+ .-++++.+. +.++..-|.++.-..-+|+
T Consensus 82 f~~~p~nLl~~~~~~yv~~g~Ws~~a~~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~~~ayv~~~~NeTi~Gv 159 (365)
T COG1932 82 FAMAPMNLLGKRGTDYVDTGAWSEFAIKEAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSDNDAYVHFCWNETISGV 159 (365)
T ss_pred HHHHHHhhhcccCceeEeeeehhHhHHHHHHHhcccccccccceeccCccCCCChhhcc--cCCCccEEEEecCCcccce
Confidence 99888888876543255566666542 22344443 22222222222 234555443 3334333444433334577
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHH
Q 013883 258 MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVR 337 (434)
Q Consensus 258 ~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~ 337 (434)
-++. ...+. .+.++|.|..-.-|.. ...+..+ .++..+.=|++|..| ++.++.+++++.+++
T Consensus 160 ~v~~--~p~~~-----~~~~~v~D~SS~ilsr---~iDvsk~------dviyagaQKnlGpaG--ltvvIvr~~~l~r~~ 221 (365)
T COG1932 160 EVPE--LPDIG-----SDGLLVADASSAILSR---PIDVSKY------DVIYAGAQKNLGPAG--LTVVIVRPDLLERAE 221 (365)
T ss_pred EccC--CCCCC-----CCceEEEecccHHhcC---CCChhHc------ceEEEehhhccCccc--eEEEEEcHHHHhccc
Confidence 5542 11111 1278888886655431 2222222 256678889999888 999999999988775
Q ss_pred HH-------------hhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEe--e--cCCeeE
Q 013883 338 QA-------------HSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKV--F--PSSGTY 398 (434)
Q Consensus 338 ~~-------------~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~--~--~~~~~~ 398 (434)
.. ...+..+++.+.-+....+++-. ...++.+.++-+++.+.|++.+.+.+|-- + .....|
T Consensus 222 ~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~~~RS~m 301 (365)
T COG1932 222 SYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSDFYRNLVAKANRSRM 301 (365)
T ss_pred ccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCccccccchhhccce
Confidence 43 11223344555555554444421 23467778888889999999998875421 1 233556
Q ss_pred EEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 399 FVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
-+.+++.... -+..|+..+ +++|+...-|
T Consensus 302 nV~f~~~~~~--ld~~fv~ea-e~~gl~~lkG 330 (365)
T COG1932 302 NVTFTLVDAE--LDKGFVAEA-EAAGLIYLKG 330 (365)
T ss_pred eEEEEcCcHH--HHHHHHHHH-HHcCCceecc
Confidence 6666654322 245666665 4557776555
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00024 Score=68.60 Aligned_cols=244 Identities=11% Similarity=0.094 Sum_probs=137.7
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccC--C-----C-----CeEEE-cCCCchh
Q 013883 140 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLIN--P-----G-----DEVIL-FAPFYDS 206 (434)
Q Consensus 140 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~--~-----g-----d~Vlv-~~p~y~~ 206 (434)
..|--..+..-..+.+-..+...-|.+...+ .|+.-.|+...+..+..+-.+ | | +-|+. .+-+|.+
T Consensus 131 ~TYEiAPvF~lmE~~vl~km~~ivGw~~~~D-gIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYS 209 (510)
T KOG0629|consen 131 FTYEIAPVFVLMEEEVLAKMREIVGWEEGGD-GIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYS 209 (510)
T ss_pred ceEEecceEEeehHHHHHHHHHHhCCCCCCC-ceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhh
Confidence 3443333433344445555555667665534 676666666666655443311 1 2 33444 4567888
Q ss_pred HHHHHHHcC---CEEEEEEcCCCCCCCCHHHHHhhccc-CCc-EE-EecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEE
Q 013883 207 YEATLSMAG---AKIKCITLRPPDFAIPIEELKSTISK-NTR-AI-LMNTPHNPTGKMFTREELNVIASLCIENDVLVFS 280 (434)
Q Consensus 207 ~~~~~~~~G---~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~-~i-~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~ 280 (434)
....+..+| -.++.|+.++ .+.+++++||+.|-. +.+ .+ ++.|.+--|-+.=--+++..|+++|++|++|+.+
T Consensus 210 i~kaAa~lg~gtd~c~~v~t~e-~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHv 288 (510)
T KOG0629|consen 210 IKKAAAFLGLGTDHCIKVKTDE-RGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHV 288 (510)
T ss_pred HHHHHHHhccCCceeEEecccc-cCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEe
Confidence 888888888 4678888875 788999999998854 112 11 2223323332222234688899999999999999
Q ss_pred cCcCCccc-cCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh-hHHHHHHHhhccccC-----------C
Q 013883 281 DEVYDKLA-FEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH-LTWGVRQAHSFLTFA-----------T 347 (434)
Q Consensus 281 Deay~~~~-~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~-~~~~l~~~~~~~~~~-----------~ 347 (434)
|.||.+.. ..-.+........ .---+..+..|.+| +.+.++.++...+ ++.++.......-|. .
T Consensus 289 DAAwGGglLmS~k~R~kl~Gie--ra~SvtwnpHK~~g-aplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTg 365 (510)
T KOG0629|consen 289 DAAWGGGLLMSRKHRHKLTGIE--RANSVTWNPHKLMG-APLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTG 365 (510)
T ss_pred ecccccccccChhhHhhccCcc--ccCceeecHHHhhc-CcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccc
Confidence 99998732 2222222111111 11134567789998 6677776665432 344333222111000 0
Q ss_pred chHHHHH-------HHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCC
Q 013883 348 STPMQWA-------ATAALRA-PETYYEELKRDYSAKKAILVEGLNAVG 388 (434)
Q Consensus 348 ~~~~q~a-------~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g 388 (434)
.-..|-. .-..++. +...+++.++++.+..+++.+.|++.+
T Consensus 366 dK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~ 414 (510)
T KOG0629|consen 366 DKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLRERE 414 (510)
T ss_pred cchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0011111 1222332 234567778899999999999999874
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00068 Score=64.05 Aligned_cols=181 Identities=15% Similarity=0.170 Sum_probs=99.5
Q ss_pred CHHHHHhhccc-----CCcEEEecCC-CCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCC--CC
Q 013883 231 PIEELKSTISK-----NTRAILMNTP-HNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASL--PG 301 (434)
Q Consensus 231 d~~~l~~~i~~-----~~~~i~~~~p-~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~--~~ 301 (434)
.++++|+.|.. .+.+-++..| +...|- -.+++..++|.+++++|++.+|+||++.+..-.|+.+.-... ..
T Consensus 254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~ 333 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDS 333 (484)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCC
Confidence 36677777743 2444445555 666665 458888999999999999999999999987766655433222 22
Q ss_pred CCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 013883 302 MYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILV 381 (434)
Q Consensus 302 ~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~ 381 (434)
.+| +-+|||-|- .| ||++..+-... +.++.+.++...+.-...+..+++... -+.+.+..++.-+.|.
T Consensus 334 PpD----~vTFSKK~q-~g---Gffh~~~frpn--~pYrifNTWmGdP~k~lll~~vv~~I~--~~~Ll~n~~~vG~~l~ 401 (484)
T KOG1405|consen 334 PPD----VVTFSKKFQ-TG---GFFHDEEFRPN--EPYRIFNTWMGDPSKNLLLEEVVQEIK--REDLLNNVAHVGKALL 401 (484)
T ss_pred Ccc----ceehhhhhh-cC---ccccCcccCCC--chHHHhhhhcCChHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 222 668999995 55 67665322111 112233344444443434444444311 1234444455555666
Q ss_pred HHhhhC----C--CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEE
Q 013883 382 EGLNAV----G--FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVA 427 (434)
Q Consensus 382 ~~L~~~----g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v 427 (434)
..|.++ + +.-....|.|. ..+++. +. --..++..+ +-.||.+
T Consensus 402 ~gL~~Lq~~~p~~~~~~RGrGTF~-a~d~ps-~~-~Rdk~i~~~-~~nGv~~ 449 (484)
T KOG1405|consen 402 KGLLELQAKYPGKINNLRGRGTFI-AWDCPS-GS-IRDKLILIA-RLNGVNL 449 (484)
T ss_pred HHHHHHHHhCchhhhcccccceEE-EEeCCC-hH-HHHHHHHHH-HHcCcee
Confidence 665543 2 33344566654 445532 11 122444444 3447654
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0012 Score=64.54 Aligned_cols=147 Identities=18% Similarity=0.273 Sum_probs=99.6
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCC-------CCCCcEEEcCChHHHHHHHHHHc-------cCCCC----------
Q 013883 140 NQYARGHGVPEFNSAIASRFKKDSGLEV-------DPEKEVTVTSGCTEAIAATILGL-------INPGD---------- 195 (434)
Q Consensus 140 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~-------~~~~~i~~t~G~~~ai~~~~~~l-------~~~gd---------- 195 (434)
+.+....-..||..-+-+|+.+..+++. ....-++-++. +++...++.+. .+.++
T Consensus 103 FtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~ta-ses~lvallaaR~~~i~~~k~~~p~~~e~~~~~ 181 (511)
T KOG0628|consen 103 FTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTA-SESVLVALLAARTEKIEEIKSRPPELHESSVLA 181 (511)
T ss_pred ceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCc-chhHHHHHHHHHHHHHHHhhcCCCcccchhhhh
Confidence 3444444678999999999998876531 12213444444 44443333222 12221
Q ss_pred --eEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCC-c---EEEecCCCCCcccCCCHHHHHHHHH
Q 013883 196 --EVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNT-R---AILMNTPHNPTGKMFTREELNVIAS 269 (434)
Q Consensus 196 --~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~-~---~i~~~~p~NPTG~~~~~e~l~~i~~ 269 (434)
.++..+-.+.+....+...|.+++.++.+. +++++-+.|+++|.++. + -++++ .+--|...-.-+++.+|..
T Consensus 182 ~lV~Y~SDqahssveka~~i~~VklR~l~td~-n~~mr~~~L~~AIe~D~arGlIPf~v~-at~GTT~~ca~D~l~elg~ 259 (511)
T KOG0628|consen 182 RLVAYCSDQAHSSVEKACLIAGVKLRALPTDE-NFGMRGDTLRKAIEEDIARGLIPFFVC-ATLGTTSSCAFDELEELGP 259 (511)
T ss_pred hheEEecCcccchHHHhHhhcceeEEEeeccc-CcCCCHHHHHHHHHHHHhCCCccEEEE-EeecCccccccccHHHhcc
Confidence 366788899999999999999999999987 99999999999997622 1 12222 2223333345568999999
Q ss_pred HHHHcCcEEEEcCcCCcccc
Q 013883 270 LCIENDVLVFSDEVYDKLAF 289 (434)
Q Consensus 270 la~~~~~~iI~Deay~~~~~ 289 (434)
+|+++++|+.+|.+|++-.+
T Consensus 260 Vc~~~glWLHVDAAYAGsa~ 279 (511)
T KOG0628|consen 260 VCREEGLWLHVDAAYAGSAF 279 (511)
T ss_pred hhhhcCEEEEeehhhccccc
Confidence 99999999999999997554
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.036 Score=61.41 Aligned_cols=213 Identities=14% Similarity=0.113 Sum_probs=133.9
Q ss_pred HHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc------cCCCCeEEEcC
Q 013883 129 DAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL------INPGDEVILFA 201 (434)
Q Consensus 129 ~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l------~~~gd~Vlv~~ 201 (434)
..+...+++. ...|.++.|...+|..||.+++..++++++++ +|++..+-..|++.+++.+ ++.+.+-.++
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 485 (1082)
T PLN02672 408 AYLASALKGLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPD-NVVVFPSRAVAIENALRLFSPRLAIVDEHLTRWLP- 485 (1082)
T ss_pred HHHHHHHccCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCcc-ceEEeccHHHHHHHHHHhhChHHHhhhhhhhccCC-
Confidence 3455556553 46799999999999999999999999999999 8999999999998887755 3444333222
Q ss_pred CCchhHHHHHHHcCC-------EEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHHHHHHHHH
Q 013883 202 PFYDSYEATLSMAGA-------KIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIE 273 (434)
Q Consensus 202 p~y~~~~~~~~~~G~-------~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~ 273 (434)
..+...+...|. ..++|--.+ .+ -+.+.+++++ ++++|+..-.+ +-..+....+.|.+.+++
T Consensus 486 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 555 (1082)
T PLN02672 486 ---KKWLTSLAIENATSDSKSDDVITVIEAP--RQ--SDLVIELIKKLKPQVVVTGMAD---FEMRTSTAFEHLLNVTAE 555 (1082)
T ss_pred ---HHHHhHhhhhcccccCccCCeEEEEeCC--Cc--chHHHHHHHhCCCeEEEEeccc---hhhhhHHHHHHHHHHHHh
Confidence 122222223221 112221111 11 2345666655 67777654433 223455678899999999
Q ss_pred cCcEEEEcCc-CCccccCCCCcccc-CC--CCCCCceEEEccCChhhccccceeeeEEeC-hhhHHHHHHHhhccccCCc
Q 013883 274 NDVLVFSDEV-YDKLAFEMDHISIA-SL--PGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLTFATS 348 (434)
Q Consensus 274 ~~~~iI~Dea-y~~~~~~~~~~~~~-~~--~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~~~~~~ 348 (434)
.|.+++.|.. |.++........+. .+ ...+.+..++..+-|+-=.+.+-+.+++.- ..+...+.+.......+..
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1082)
T PLN02672 556 IGARLFLDISDHLELSSLPGSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFVISENEAVLKALSKTGEVLEGRTA 635 (1082)
T ss_pred hCcEEEEehhhheeeccCCCcccHHHHhcCCCCCcchhHhhhhhhccccccceEEEEecCcHHHHHHHHHHHHhhccchH
Confidence 9999999986 44443222221211 11 123456677888888887789999998875 4455556555544444555
Q ss_pred hHHHH
Q 013883 349 TPMQW 353 (434)
Q Consensus 349 ~~~q~ 353 (434)
.+.|+
T Consensus 636 ~~~~~ 640 (1082)
T PLN02672 636 IISQF 640 (1082)
T ss_pred HHHHH
Confidence 55544
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.02 Score=52.27 Aligned_cols=192 Identities=19% Similarity=0.170 Sum_probs=99.9
Q ss_pred hcCCCCCCCCcEEEcCChHHHHHHHHHHcc--CCC-CeEEEcCCCchhHHHHHHHcCCEEEEEEc-CC-CCCCCCHHHHH
Q 013883 162 DSGLEVDPEKEVTVTSGCTEAIAATILGLI--NPG-DEVILFAPFYDSYEATLSMAGAKIKCITL-RP-PDFAIPIEELK 236 (434)
Q Consensus 162 ~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~--~~g-d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~-~~-~~~~~d~~~l~ 236 (434)
..|++.-.. .+++--.....+.+.+..+. +|. ..|+-+.-.-......+-.+|.+++.+.- .+ +.-.-|++.++
T Consensus 69 l~glhav~n-c~vvpl~tgmslslc~~s~r~krpkakyiiw~ridqks~~ksi~~agfepiiie~i~d~d~l~tdleav~ 147 (432)
T KOG3843|consen 69 LAGLHAVAN-CFVVPLATGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDELITDLEAVE 147 (432)
T ss_pred Hhhhhhhhc-eeEEeccccccHHHHHHHHhhcCCcccEEEEEecchHHHHHHHHhcCCCceeeeccccchHHHHhHHHHH
Confidence 345544343 45543333334555555553 343 33444444444444445567887766643 22 22345788888
Q ss_pred hhccc-CCcEEEecCCCCCccc--CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCC
Q 013883 237 STISK-NTRAILMNTPHNPTGK--MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLG 313 (434)
Q Consensus 237 ~~i~~-~~~~i~~~~p~NPTG~--~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~S 313 (434)
+.+.+ +...|+-. |..|.. .-+++.+++|+.+|..|+++-|+..+|..-..+ --..+..-...+.-..+++|+-
T Consensus 148 ~~iee~g~dcilci--~sttscfapr~pd~leaiaaica~~diphivnnayglqsee-~i~~iaa~~~~grida~vqsld 224 (432)
T KOG3843|consen 148 AIIEELGEDCILCI--HSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEE-CIHKIAAAAECGRIDAFVQSLD 224 (432)
T ss_pred HHHHHhCCceEEEE--eecccccCCCCCchHHHHHHHHHccCchhhhccccccchHH-HHHHHHHHhhhccHHHHHHHhh
Confidence 88766 44433321 222211 224568999999999999999999999752211 0001111111122335688999
Q ss_pred hhhccccceee-eEEe--ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC
Q 013883 314 KTFSLTGWKIG-WAIA--PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP 362 (434)
Q Consensus 314 K~~g~~G~R~G-~~~~--~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~ 362 (434)
|+|-.| +| .+++ +..++..+.+.... -....++...+...|..+
T Consensus 225 knf~vp---vggaiia~fk~n~iq~iak~ypg--rasa~ps~dllitll~~g 271 (432)
T KOG3843|consen 225 KNFMVP---VGGAIIAAFKDNFIQEIAKMYPG--RASASPSLDLLITLLSLG 271 (432)
T ss_pred hcceee---cchhHhhHhHHHHHHHHHHhCCC--ccccCccHHHHHHHHHhc
Confidence 999644 34 3332 34556555554332 223344444444445443
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.28 Score=50.50 Aligned_cols=269 Identities=17% Similarity=0.242 Sum_probs=148.6
Q ss_pred CCCCCC---CCcHHHHHHHHHHHHhhcCCCCCCCCcEEE--cCChHH--HHHHHHHHcc-CCC---C-eEEEcCCCchhH
Q 013883 140 NQYARG---HGVPEFNSAIASRFKKDSGLEVDPEKEVTV--TSGCTE--AIAATILGLI-NPG---D-EVILFAPFYDSY 207 (434)
Q Consensus 140 ~~Y~~~---~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~--t~G~~~--ai~~~~~~l~-~~g---d-~Vlv~~p~y~~~ 207 (434)
+.|.|. +|+.++-..+.++|-...|.+ .+.+ .+|++. +...++++.. ..| + .-++|-..+...
T Consensus 569 HPF~P~eQaqGY~~lf~~Le~~Lc~iTG~D-----~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTN 643 (1001)
T KOG2040|consen 569 HPFAPVEQAQGYQQLFTELEKDLCEITGFD-----SFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTN 643 (1001)
T ss_pred CCCCchHHHhhHHHHHHHHHHHhheeeccc-----ceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCC
Confidence 445553 477788888888877665542 3433 344332 2333455543 233 2 355677777777
Q ss_pred HHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc---CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcC
Q 013883 208 EATLSMAGAKIKCITLRPPDFAIPIEELKSTISK---NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVY 284 (434)
Q Consensus 208 ~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~---~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay 284 (434)
...+.++|.+++.|..+. ++.+|+.+|++...+ +-.++.+..|.. .|+ =.+.++.++++.++||-.+..|.+-
T Consensus 644 PASA~MagmkvvpV~~~~-~G~id~~dLk~kaekh~~~Laa~MvTYPST-~Gv--fE~~i~d~cd~iHehGGQVYlDGAN 719 (1001)
T KOG2040|consen 644 PASAAMAGMKVVPVGCDA-NGNIDMVDLKAKAEKHKDNLAALMVTYPST-HGV--FEEGIDDICDIIHEHGGQVYLDGAN 719 (1001)
T ss_pred hhhHHhcCCEEEEeeccC-CCCccHHHHHHHHHHhhhhhheeEEecccc-ccc--ccccHHHHHHHHHhcCCEEEecCCC
Confidence 777889999999999985 788999999987765 446777776632 243 2457999999999999999999875
Q ss_pred CccccCCCCccccCCCCCCCceEEEccCChhhcc----ccceeeeEEeChhhHHHHHH-----------Hhhc-----cc
Q 013883 285 DKLAFEMDHISIASLPGMYERTVTMNSLGKTFSL----TGWKIGWAIAPPHLTWGVRQ-----------AHSF-----LT 344 (434)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~----~G~R~G~~~~~~~~~~~l~~-----------~~~~-----~~ 344 (434)
-.-..+ +- -+++.+..+.=--+.|+|.+ .|..+|=+.+++.+...+-. .... .+
T Consensus 720 MNAqVG-----lc-~pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP 793 (1001)
T KOG2040|consen 720 MNAQVG-----LC-RPGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAP 793 (1001)
T ss_pred ccceec-----cc-CCccccccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccC
Confidence 331111 11 11222222333345666633 34445655555444332210 0000 01
Q ss_pred cCCch--HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEE---EeeecCCCC---CCCHHHHH
Q 013883 345 FATST--PMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYF---VVVDHTPFG---HETDIAFC 416 (434)
Q Consensus 345 ~~~~~--~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~ 416 (434)
|+... +..++-..++... .++.......-+.+++.+.|+..---++...-++. +.+++.++. .-+..+++
T Consensus 794 ~Gsa~ILpISwaYikmMG~~--GL~~as~~AiLNaNYMakRLe~hYkil~~~~~~~vaHEFIlD~r~fK~~agieavDvA 871 (1001)
T KOG2040|consen 794 WGSALILPISWAYIKMMGSG--GLKDASKIAILNANYMAKRLESHYKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVA 871 (1001)
T ss_pred CCcceeehhHHHHHHHhccc--ccchhhHHHhhhhHHHHHHHhhccceeEecCCcceeeeeeeechhhccccCCcHHHHH
Confidence 22111 1233333334331 23444444455677888888764211222222221 245555442 12578899
Q ss_pred HHHHHhcCeE
Q 013883 417 EYLIKEVGVV 426 (434)
Q Consensus 417 ~~Ll~~~GV~ 426 (434)
++|. ++|..
T Consensus 872 KRL~-DYgFH 880 (1001)
T KOG2040|consen 872 KRLM-DYGFH 880 (1001)
T ss_pred HHHH-hccCC
Confidence 9985 46753
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.3 Score=45.87 Aligned_cols=279 Identities=19% Similarity=0.249 Sum_probs=139.6
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHHcC-C-CCCCCCC-----CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 114 LGQGFPNFDGPDFVKDAAIQAIRDG-K-NQYARGH-----GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 114 l~~g~p~~~~~~~v~~~~~~~~~~~-~-~~Y~~~~-----G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
.+.||-+.-.|+.+.+ ..+++. + .+|.|.+ |-.|-.-.....+....|+++... -++--|...+-..+
T Consensus 123 IGmGYyn~~vP~~I~R---Nilenp~W~TqYTPYQ~EIsQGRLEsllNyQTmi~dlTGL~~aNA--SLLDEgTAaaEAm~ 197 (1001)
T KOG2040|consen 123 IGMGYYNTHVPAVILR---NILENPGWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMANA--SLLDEGTAAAEAMA 197 (1001)
T ss_pred hccccccccCcHHHHH---HhhhCCcceeccCCCchhhhhhhHHHHhhhHHhhhhccCCcccch--hhhccchhHHHHHH
Confidence 3556555555555543 234442 2 5687765 221111112222333456665432 34444433333333
Q ss_pred HHHccCCCCeEEEcCCCchhHHHHHHH----cCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHH
Q 013883 187 ILGLINPGDEVILFAPFYDSYEATLSM----AGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTRE 262 (434)
Q Consensus 187 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~----~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e 262 (434)
+..-.+++.+.++...+|+....+++. +|++++..+ ++... ...++...+++..|.. -|.+.
T Consensus 198 l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~---------~~~~~-~s~~~v~gvlvQYP~t-~G~i~--- 263 (1001)
T KOG2040|consen 198 LCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSD---------IKEAD-YSSKDVSGVLVQYPDT-EGSVL--- 263 (1001)
T ss_pred HHHhhcccceEEecCCCCcchhhhhhccccccceeEEecC---------HHHhh-ccccceeEEEEEcCCC-CCccc---
Confidence 333345666799999999988777543 444443322 22111 1223566777777743 56666
Q ss_pred HHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEcc---CChhhccccceeeeEEeChhhHH-----
Q 013883 263 ELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNS---LGKTFSLTGWKIGWAIAPPHLTW----- 334 (434)
Q Consensus 263 ~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S---~SK~~g~~G~R~G~~~~~~~~~~----- 334 (434)
++.++++.+++.+.+++.-. ..+ ...+..-++..+..|.++| |.--+|..|.-.||+.+..++..
T Consensus 264 d~~el~~~a~~~~s~vv~at--DLL-----aLtiLrpPgefGaDIavGSsQRFGVPlGYGGPHAaFfAv~~~l~R~mPGR 336 (1001)
T KOG2040|consen 264 DFDELVELAHANGSLVVMAT--DLL-----ALTILRPPGEFGADIAVGSSQRFGVPLGYGGPHAAFFAVSESLVRMMPGR 336 (1001)
T ss_pred CHHHHHHHhhccCceEEEee--hhh-----HHHccCChhhcCceeeeccccccCccccCCCchHHHHHHHHHHHhhCCCc
Confidence 45668888888888877521 111 1122333444555677766 44444544555555554333221
Q ss_pred ----------------HHH----HHhh-ccccCCchHH----HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 013883 335 ----------------GVR----QAHS-FLTFATSTPM----QWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGF 389 (434)
Q Consensus 335 ----------------~l~----~~~~-~~~~~~~~~~----q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 389 (434)
++. .+++ ..+.+..... -.++..++-++.+.++++.+++....-.|...|++.|.
T Consensus 337 iiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICTAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~agh 416 (1001)
T KOG2040|consen 337 IIGVTKDALGKEAYRLALQTREQHIRRDKATSNICTAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNAGH 416 (1001)
T ss_pred eEeeeecccccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 110 1111 1123332221 11122223334556888888888888899999998885
Q ss_pred EeecCCeeEEEeeecCCCCCCCHHHHHHHHHHh
Q 013883 390 KVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKE 422 (434)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 422 (434)
++... .||=.+++. .+. +.+++..+.+++
T Consensus 417 el~~k--~fFDTLkI~-~~~-s~~~~l~rA~~~ 445 (1001)
T KOG2040|consen 417 ELQHK--PFFDTLKIR-CGC-SAEEVLDRAAKR 445 (1001)
T ss_pred hhccc--cccceEEEE-ecC-cHHHHHHHHHhh
Confidence 55433 255433332 121 356666666554
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.1 Score=41.87 Aligned_cols=251 Identities=14% Similarity=0.082 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc--CCC---CeEEEcCCCchhHHHHHHHcCCEEEEEEcC
Q 013883 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI--NPG---DEVILFAPFYDSYEATLSMAGAKIKCITLR 224 (434)
Q Consensus 150 ~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~--~~g---d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~ 224 (434)
.+.+.....+.+.+.++-.-+ -+++..|++.-+.++...++ +.| |-|+.-..+-..+..+-+......+..+..
T Consensus 52 kii~~tes~lreLlniPdn~~-vlf~QGGGt~qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k 130 (370)
T KOG2790|consen 52 KIINDTESLLRELLNIPDNYK-VLFLQGGGTGQFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLK 130 (370)
T ss_pred HHHHHHHHHHHHHHcCCCcee-EEEEeCCCcccccccchhhhccccCCccceEEeccccHHHHHHHHhhCCceEEecccc
Confidence 444445555555556543333 45667777877777766665 444 455554444444555544444445544444
Q ss_pred CCC--CCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCC
Q 013883 225 PPD--FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM 302 (434)
Q Consensus 225 ~~~--~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~ 302 (434)
+-. .-+|.+.++. +++.+.+++|.-...-|+-++. +- +-.-++.++|.|..-..+. .+..+.
T Consensus 131 ~y~ygkvPd~~~w~~--~~da~yvyyCaNETVHGVEf~~-----~P-~~~~~~~vlVaDmSSnflS---rpvDvs----- 194 (370)
T KOG2790|consen 131 SYTYGKVPDPSTWEL--NPDASYVYYCANETVHGVEFDF-----IP-VNDPKGAVLVADMSSNFLS---RPVDVS----- 194 (370)
T ss_pred ccccCcCCChhhccc--CCCccEEEEecCceeeceecCC-----CC-CCCCCCceEEEecccchhc---CCccch-----
Confidence 323 3356666653 3455566665433334664421 11 1134688889988665543 122222
Q ss_pred CCceEEEccCChhhccccceeeeEEeChhhHHHHHHH------------hhccccCCchHHHHHHHHHHhCC--hHHHHH
Q 013883 303 YERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA------------HSFLTFATSTPMQWAATAALRAP--ETYYEE 368 (434)
Q Consensus 303 ~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~------------~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~ 368 (434)
..-+++...-|++|.+| +-.++..++++.....+ ......++|....+++-.+++.. ...+..
T Consensus 195 -k~gvi~aGAQKN~G~aG--~Tvvivr~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a 271 (370)
T KOG2790|consen 195 -KFGVIFAGAQKNVGPAG--VTVVIVRKDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGLAA 271 (370)
T ss_pred -hcceEEeccccccCccc--cEEEEEehhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhcccHHH
Confidence 22356777889999888 55566666665422111 11122344555555554444431 223556
Q ss_pred HHHHHHHHHHHHHHHhhhC-CCEeecC----CeeEEEeeecCCCCCCCHHHHHHHHHHh
Q 013883 369 LKRDYSAKKAILVEGLNAV-GFKVFPS----SGTYFVVVDHTPFGHETDIAFCEYLIKE 422 (434)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 422 (434)
+...-.+..+.+++.+.+. |+-..+- ..-|-+.+++.+.. -..+|.....++
T Consensus 272 ~e~~n~~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~~d~--Le~eFLkeA~~~ 328 (370)
T KOG2790|consen 272 MEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIEKDE--LEAEFLKEAAKE 328 (370)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEcccchhhhhhcccceeecchH--HHHHHHHHHHHh
Confidence 6667777889999999875 6543321 23444444443221 234555554444
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.24 E-value=1.8 Score=40.79 Aligned_cols=114 Identities=19% Similarity=0.215 Sum_probs=82.2
Q ss_pred CCCcEEEcCChHHHHHHHHHHccCCC---CeEEEcCCCchh----HHHHHHHcCCEEE----EEEcCCCCCCCCHHHHHh
Q 013883 169 PEKEVTVTSGCTEAIAATILGLINPG---DEVILFAPFYDS----YEATLSMAGAKIK----CITLRPPDFAIPIEELKS 237 (434)
Q Consensus 169 ~~~~i~~t~G~~~ai~~~~~~l~~~g---d~Vlv~~p~y~~----~~~~~~~~G~~~~----~v~~~~~~~~~d~~~l~~ 237 (434)
.+ +|.+.|+-+..+..++..|.+|- -+|+++.-.|++ ....++..|..+. .+...+.+..+..+++.+
T Consensus 128 e~-EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd 206 (465)
T KOG3846|consen 128 EN-EVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILD 206 (465)
T ss_pred ch-hhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHH
Confidence 44 89999999999999999998764 358887766654 4556777787643 233333234567778888
Q ss_pred hccc---CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCc
Q 013883 238 TISK---NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDK 286 (434)
Q Consensus 238 ~i~~---~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~ 286 (434)
.|.. ...+|+++..+.-||..+ ++.+|-..-+..|+++=+|-++..
T Consensus 207 ~IEkngDeiA~v~fSGvqyYTGQ~F---di~aIT~Agq~kgc~VGfDLAHAv 255 (465)
T KOG3846|consen 207 TIEKNGDEIALVCFSGVQYYTGQYF---DIGAITFAGQFKGCLVGFDLAHAV 255 (465)
T ss_pred HHHhcCCeEEEEEeecceeeccccc---chhhhhhcccCCCcEechhhhhhh
Confidence 7765 345566778899999999 566677655667999999998875
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=87.43 E-value=4.7 Score=36.76 Aligned_cols=97 Identities=16% Similarity=0.123 Sum_probs=57.7
Q ss_pred EEcCChHHHHHHHHHHccCCCCe-EEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCC
Q 013883 174 TVTSGCTEAIAATILGLINPGDE-VILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPH 252 (434)
Q Consensus 174 ~~t~G~~~ai~~~~~~l~~~gd~-Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~ 252 (434)
+++.++-..-..++.+|+..+-. .++..+.-......++..|++++...++ |.+.|.++++ +...|+++.+.
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~------~~~~l~~al~-g~d~v~~~~~~ 74 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYD------DPESLVAALK-GVDAVFSVTPP 74 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-------HHHHHHHHT-TCSEEEEESSC
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccC------CHHHHHHHHc-CCceEEeecCc
Confidence 34433233334455666556643 4445555444555677889998866555 7899999997 55556555553
Q ss_pred CCcccCCCHHHHHHHHHHHHHcCcEEEE
Q 013883 253 NPTGKMFTREELNVIASLCIENDVLVFS 280 (434)
Q Consensus 253 NPTG~~~~~e~l~~i~~la~~~~~~iI~ 280 (434)
+. ....+.-+.+++.|++.|+-.++
T Consensus 75 ~~---~~~~~~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 75 SH---PSELEQQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp SC---CCHHHHHHHHHHHHHHHT-SEEE
T ss_pred ch---hhhhhhhhhHHHhhhccccceEE
Confidence 32 22345678899999998876664
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.74 E-value=13 Score=33.57 Aligned_cols=100 Identities=20% Similarity=0.320 Sum_probs=67.0
Q ss_pred cEEEcCChHHHHHHHHHHccCCCCeEE---E---cCC---Cc--hh---HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHh
Q 013883 172 EVTVTSGCTEAIAATILGLINPGDEVI---L---FAP---FY--DS---YEATLSMAGAKIKCITLRPPDFAIPIEELKS 237 (434)
Q Consensus 172 ~i~~t~G~~~ai~~~~~~l~~~gd~Vl---v---~~p---~y--~~---~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~ 237 (434)
-+.+-+|+.....++..++ +.|..|. . .++ .| ++ ....++.+|++++...... ...-..++|.+
T Consensus 3 ~~aL~SGGKDS~~Al~~a~-~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g-~~e~eve~L~~ 80 (223)
T COG2102 3 VIALYSGGKDSFYALYLAL-EEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSG-EEEREVEELKE 80 (223)
T ss_pred EEEEEecCcHHHHHHHHHH-HcCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCc-cchhhHHHHHH
Confidence 4677788898877665554 3343321 1 112 12 11 2345777999988887763 23335777877
Q ss_pred hccc-CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEE
Q 013883 238 TISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFS 280 (434)
Q Consensus 238 ~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~ 280 (434)
+++. +..+|+ +|.+.+..+...+-.+|++-|+-++.
T Consensus 81 ~l~~l~~d~iv-------~GaI~s~yqk~rve~lc~~lGl~~~~ 117 (223)
T COG2102 81 ALRRLKVDGIV-------AGAIASEYQKERVERLCEELGLKVYA 117 (223)
T ss_pred HHHhCcccEEE-------EchhhhHHHHHHHHHHHHHhCCEEee
Confidence 7765 455665 79999999999999999999987764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 434 | ||||
| 1u08_A | 386 | Crystal Structure And Reactivity Of Ybdl From Esche | 5e-79 | ||
| 2o0r_A | 411 | The Three-Dimensional Structure Of N-Succinyldiamin | 1e-75 | ||
| 3e2z_B | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 3e-72 | ||
| 3e2f_A | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 1e-71 | ||
| 1w7n_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 2e-66 | ||
| 1w7l_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 8e-66 | ||
| 3fvs_A | 422 | Human Kynurenine Aminotransferase I In Complex With | 1e-65 | ||
| 1yiy_A | 429 | Aedes Aegypti Kynurenine Aminotransferase Length = | 5e-64 | ||
| 1yiz_A | 429 | Aedes Aegypti Kynurenine Aminotrasferase Length = 4 | 2e-63 | ||
| 1v2d_A | 381 | Crystal Structure Of T.Th Hb8 Glutamine Aminotransf | 6e-56 | ||
| 1b5o_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Sin | 2e-54 | ||
| 1bkg_A | 385 | Aspartate Aminotransferase From Thermus Thermophilu | 3e-54 | ||
| 3b46_A | 447 | Crystal Structure Of Bna3p, A Putative Kynurenine A | 4e-54 | ||
| 1dju_A | 388 | Crystal Structure Of Aromatic Aminotransferase From | 5e-54 | ||
| 1gde_A | 389 | Crystal Structure Of Pyrococcus Protein A-1 E-form | 6e-54 | ||
| 1gck_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Dou | 6e-54 | ||
| 1bjw_A | 382 | Aspartate Aminotransferase From Thermus Thermophilu | 1e-53 | ||
| 1gc3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 2e-53 | ||
| 5bj3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 2e-53 | ||
| 1o4s_A | 389 | Crystal Structure Of Aspartate Aminotransferase (Tm | 9e-45 | ||
| 1j32_A | 388 | Aspartate Aminotransferase From Phormidium Lapideum | 7e-42 | ||
| 1xi9_A | 406 | Alanine Aminotransferase From Pyrococcus Furiosus P | 7e-38 | ||
| 2x5d_A | 412 | Crystal Structure Of A Probable Aminotransferase Fr | 2e-34 | ||
| 2z61_A | 370 | Crystal Structure Of Mj0684 From Methanococcus Jann | 6e-31 | ||
| 2gb3_A | 409 | Crystal Structure Of Aspartate Aminotransferase (Tm | 2e-25 | ||
| 2o1b_A | 404 | Structure Of Aminotransferase From Staphylococcus A | 1e-24 | ||
| 3pdx_A | 402 | Crystal Structural Of Mouse Tyrosine Aminotransfera | 1e-20 | ||
| 3dyd_A | 427 | Human Tyrosine Aminotransferase Length = 427 | 8e-20 | ||
| 3b1c_A | 392 | Crystal Structure Of Betac-S Lyase From Streptococc | 3e-18 | ||
| 3ele_A | 398 | Crystal Structure Of Amino Transferase (rer07020700 | 4e-18 | ||
| 3op7_A | 375 | Crystal Structure Of A Plp-Dependent Aminotransfera | 1e-17 | ||
| 3l8a_A | 421 | Crystal Structure Of Metc From Streptococcus Mutans | 2e-17 | ||
| 2zc0_A | 407 | Crystal Structure Of An Archaeal Alanine:glyoxylate | 9e-17 | ||
| 2dou_A | 376 | Probable N-Succinyldiaminopimelate Aminotransferase | 2e-15 | ||
| 3h14_A | 391 | Crystal Structure Of A Putative Aminotransferase Fr | 1e-14 | ||
| 3jtx_A | 396 | Crystal Structure Of Aminotransferase (np_283882.1) | 3e-14 | ||
| 3dzz_A | 391 | Crystal Structure Of A Putative Plp-Dependent Amino | 9e-14 | ||
| 1iax_A | 428 | Crystal Structure Of Acc Synthase Complexed With Pl | 9e-14 | ||
| 1bw0_A | 416 | Crystal Structure Of Tyrosine Aminotransferase From | 8e-13 | ||
| 4dgt_A | 391 | Crystal Structure Of Plp-Bound Putative Aminotransf | 2e-12 | ||
| 1c7n_A | 399 | Crystal Structure Of Cystalysin From Treponema Dent | 3e-12 | ||
| 3t32_B | 383 | Crystal Structure Of A Putative C-S Lyase From Baci | 6e-12 | ||
| 1ynu_A | 473 | Crystal Structure Of Apple Acc Synthase In Complex | 1e-11 | ||
| 1m7y_A | 435 | Crystal Structure Of Apple Acc Synthase In Complex | 1e-11 | ||
| 1b8g_A | 429 | 1-aminocyclopropane-1-carboxylate Synthase Length = | 1e-11 | ||
| 3asa_A | 400 | Crystal Structure Of Apo-Ll-Diaminopimelate Aminotr | 3e-11 | ||
| 3ezs_A | 376 | Crystal Structure Of Aminotransferase Aspb (Np_2074 | 3e-11 | ||
| 3piu_A | 410 | High-Resolution Structure Of Native Malus Domestica | 8e-11 | ||
| 3hdo_A | 360 | Crystal Structure Of A Histidinol-Phosphate Aminotr | 2e-10 | ||
| 1uu1_A | 335 | Complex Of Histidinol-Phosphate Aminotransferase (H | 1e-09 | ||
| 2f8j_A | 347 | Crystal Structure Of Histidinol-phosphate Aminotran | 1e-09 | ||
| 4fl0_A | 456 | Crystal Structure Of Ald1 From Arabidopsis Thaliana | 5e-09 | ||
| 1x0m_A | 403 | A Human Kynurenine Aminotransferase Ii Homologue Fr | 7e-09 | ||
| 3aov_A | 448 | Crystal Structure Of Pyrococcus Horikoshii Kynureni | 8e-09 | ||
| 4gdy_A | 439 | Kynurenine Aminotransferase Ii Inhibitors Length = | 2e-08 | ||
| 4ge7_A | 439 | Kynurenine Aminotransferase Ii Inhibitors Length = | 2e-08 | ||
| 1h1c_A | 335 | Histidinol-Phosphate Aminotransferase (Hisc) From T | 2e-08 | ||
| 2xh1_A | 425 | Crystal Structure Of Human Kat Ii-Inhibitor Complex | 3e-08 | ||
| 2z20_A | 432 | Crystal Structure Of Ll-diaminopimelate Aminotransf | 3e-08 | ||
| 2r2n_A | 425 | The Crystal Structure Of Human Kynurenine Aminotran | 3e-08 | ||
| 2z1z_A | 432 | Crystal Structure Of Ll-diaminopimelate Aminotransf | 3e-08 | ||
| 3ue8_A | 439 | Kynurenine Aminotransferase Ii Inhibitors Length = | 3e-08 | ||
| 3eia_A | 432 | Crystal Structure Of K270q Variant Of Ll-Diaminopim | 7e-08 | ||
| 3nra_A | 407 | Crystal Structure Of An Aspartate Aminotransferase | 8e-08 | ||
| 1d2f_A | 390 | X-Ray Structure Of Maly From Escherichia Coli: A Py | 9e-08 | ||
| 3ei8_A | 432 | Crystal Structure Of K270n Variant Of Ll-Diaminopim | 1e-07 | ||
| 2qlr_A | 425 | Crystal Structure Of Human Kynurenine Aminotransfer | 1e-07 | ||
| 2vgz_A | 427 | Crystal Structure Of Human Kynurenine Aminotransfer | 1e-07 | ||
| 3ihj_A | 498 | Human Alanine Aminotransferase 2 In Complex With Pl | 2e-07 | ||
| 1fg3_A | 356 | Crystal Structure Of L-Histidinol Phosphate Aminotr | 2e-07 | ||
| 1gew_A | 356 | Crystal Structure Of Histidinol-Phosphate Aminotran | 3e-07 | ||
| 3qgu_A | 449 | L,L-Diaminopimelate Aminotransferase From Chalmydom | 5e-07 | ||
| 3cq4_A | 376 | Histidinol-Phosphate Aminotransferase From Coryneba | 1e-06 | ||
| 3cq5_A | 369 | Histidinol-Phosphate Aminotransferase From Coryneba | 1e-06 | ||
| 3tcm_A | 500 | Crystal Structure Of Alanine Aminotransferase From | 3e-06 | ||
| 3cq6_A | 369 | Histidinol-Phosphate Aminotransferase From Coryneba | 5e-06 | ||
| 1wst_A | 417 | Crystal Structure Of Multiple Substrate Aminotransf | 5e-06 | ||
| 1lkc_A | 364 | Crystal Structure Of L-Threonine-O-3-Phosphate Deca | 3e-05 | ||
| 3g0t_A | 437 | Crystal Structure Of Putative Aspartate Aminotransf | 4e-05 | ||
| 3fdb_A | 377 | Crystal Structure Of A Putative Plp-Dependent Beta- | 9e-05 | ||
| 1b4x_A | 396 | Aspartate Aminotransferase From E. Coli, C191s Muta | 9e-05 | ||
| 2zy2_A | 544 | Dodecameric L-Aspartate Beta-Decarboxylase Length = | 1e-04 | ||
| 3aat_A | 396 | Activity And Structure Of The Active-Site Mutants R | 2e-04 | ||
| 2d5y_A | 396 | Aspartate Aminotransferase Mutant Mc With Isovaleri | 2e-04 | ||
| 1ix6_A | 396 | Aspartate Aminotransferase Active Site Mutant V39f | 2e-04 | ||
| 1asl_A | 396 | Crystal Structures Of Escherichia Coli Aspartate Am | 2e-04 | ||
| 3euc_A | 367 | Crystal Structure Of Histidinol-Phosphate Aminotran | 2e-04 | ||
| 2d64_A | 396 | Aspartate Aminotransferase Mutant Mabc With Isovale | 2e-04 | ||
| 1aam_A | 396 | The Structural Basis For The Altered Substrate Spec | 2e-04 | ||
| 1qit_A | 396 | Aspartate Aminotransferase From Escherichia Coli, C | 2e-04 | ||
| 2d66_A | 396 | Aspartate Aminotransferase Mutant Mab Length = 396 | 2e-04 | ||
| 2d61_A | 396 | Aspartate Aminotransferase Mutant Ma With Maleic Ac | 2e-04 | ||
| 1yoo_A | 396 | Aspartate Aminotransferase Mutant Atb17 With Isoval | 2e-04 | ||
| 1qir_A | 396 | Aspartate Aminotransferase From Escherichia Coli, C | 2e-04 | ||
| 1czc_A | 396 | Aspartate Aminotransferase Mutant Atb17139S142N WIT | 2e-04 | ||
| 1ari_A | 396 | Aspartate Aminotransferase, W140h Mutant, Maleate C | 2e-04 | ||
| 1qis_A | 396 | Aspartate Aminotransferase From Escherichia Coli, C | 2e-04 | ||
| 3f6t_A | 533 | Crystal Structure Of Aspartate Aminotransferase (E. | 3e-04 | ||
| 1ahy_A | 396 | Aspartate Aminotransferase Hexamutant Length = 396 | 4e-04 | ||
| 1asf_A | 396 | The Structural Basis For The Reduced Activity Of Th | 5e-04 | ||
| 2egy_A | 397 | Crystal Structure Of Lysn, Alpha-Aminoadipate Amino | 5e-04 | ||
| 3p1t_A | 337 | Crystal Structure Of A Putative Aminotransferase (B | 6e-04 | ||
| 3zzj_A | 396 | Structure Of An Engineered Aspartate Aminotransfera | 6e-04 | ||
| 1aia_A | 396 | Structural Basis For The Catalytic Activity Of Aspa | 7e-04 | ||
| 4f5m_A | 406 | Wild-type E. Coli Aspartate Aminotransferase: A Tem | 7e-04 | ||
| 2q7w_A | 396 | Structural Studies Reveals The Inactivation Of E. C | 8e-04 | ||
| 2aat_A | 396 | 2.8-Angstroms-Resolution Crystal Structure Of An Ac | 8e-04 | ||
| 4f5k_A | 406 | Substrate Specificity Conversion Of Aspartate Amino | 8e-04 | ||
| 3ffh_A | 363 | The Crystal Structure Of Histidinol-phosphate Amino | 9e-04 |
| >pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386 | Back alignment and structure |
|
| >pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411 | Back alignment and structure |
|
| >pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410 | Back alignment and structure |
|
| >pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410 | Back alignment and structure |
|
| >pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422 | Back alignment and structure |
|
| >pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422 | Back alignment and structure |
|
| >pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422 | Back alignment and structure |
|
| >pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429 | Back alignment and structure |
|
| >pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429 | Back alignment and structure |
|
| >pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381 | Back alignment and structure |
|
| >pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385 | Back alignment and structure |
|
| >pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447 | Back alignment and structure |
|
| >pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388 | Back alignment and structure |
|
| >pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389 | Back alignment and structure |
|
| >pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385 | Back alignment and structure |
|
| >pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382 | Back alignment and structure |
|
| >pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385 | Back alignment and structure |
|
| >pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389 | Back alignment and structure |
|
| >pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388 | Back alignment and structure |
|
| >pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406 | Back alignment and structure |
|
| >pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412 | Back alignment and structure |
|
| >pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370 | Back alignment and structure |
|
| >pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409 | Back alignment and structure |
|
| >pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus Length = 404 | Back alignment and structure |
|
| >pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402 | Back alignment and structure |
|
| >pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427 | Back alignment and structure |
|
| >pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus Anginosus: Internal Aldimine Form Length = 392 | Back alignment and structure |
|
| >pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398 | Back alignment and structure |
|
| >pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase (Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70 A Resolution Length = 375 | Back alignment and structure |
|
| >pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans Length = 421 | Back alignment and structure |
|
| >pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate Aminotransferase Length = 407 | Back alignment and structure |
|
| >pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase (Ttha0342) From Thermus Thermophilus Hb8 Length = 376 | Back alignment and structure |
|
| >pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391 | Back alignment and structure |
|
| >pdb|3JTX|A Chain A, Crystal Structure Of Aminotransferase (np_283882.1) From Neisseria Meningitidis Z2491 At 1.91 A Resolution Length = 396 | Back alignment and structure |
|
| >pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent Aminotransferase (Lbul_1103) From Lactobacillus Delbrueckii Subsp. At 1.61 A Resolution Length = 391 | Back alignment and structure |
|
| >pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428 | Back alignment and structure |
|
| >pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416 | Back alignment and structure |
|
| >pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase From Clostridium Difficile 630 Crystallized With Magnesium Formate Length = 391 | Back alignment and structure |
|
| >pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola Contains A Pyridoxal 5'-Phosphate Cofactor Length = 399 | Back alignment and structure |
|
| >pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473 | Back alignment and structure |
|
| >pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435 | Back alignment and structure |
|
| >pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3ASA|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate Aminotransferase From Chlamydia Trachomatis Length = 400 | Back alignment and structure |
|
| >pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1) From Helicobacter Pylori 26695 At 2.19 A Resolution Length = 376 | Back alignment and structure |
|
| >pdb|3HDO|A Chain A, Crystal Structure Of A Histidinol-Phosphate Aminotransferase From Geobacter Metallireducens Length = 360 | Back alignment and structure |
|
| >pdb|1UU1|A Chain A, Complex Of Histidinol-Phosphate Aminotransferase (Hisc) From Thermotoga Maritima (Apo-Form) Length = 335 | Back alignment and structure |
|
| >pdb|2F8J|A Chain A, Crystal Structure Of Histidinol-phosphate Aminotransferase (ec 2.6.1.9) (imidazole Acetol-phosphate Transferase) (tm1040) From Thermotoga Maritima At 2.40 A Resolution Length = 347 | Back alignment and structure |
|
| >pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana Length = 456 | Back alignment and structure |
|
| >pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403 | Back alignment and structure |
|
| >pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448 | Back alignment and structure |
|
| >pdb|4GDY|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439 | Back alignment and structure |
|
| >pdb|4GE7|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439 | Back alignment and structure |
|
| >pdb|1H1C|A Chain A, Histidinol-Phosphate Aminotransferase (Hisc) From Thermotoga Maritima Length = 335 | Back alignment and structure |
|
| >pdb|2XH1|A Chain A, Crystal Structure Of Human Kat Ii-Inhibitor Complex Length = 425 | Back alignment and structure |
|
| >pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Length = 432 | Back alignment and structure |
|
| >pdb|2R2N|A Chain A, The Crystal Structure Of Human Kynurenine Aminotransferase Ii In Complex With Kynurenine Length = 425 | Back alignment and structure |
|
| >pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-malate Ion Length = 432 | Back alignment and structure |
|
| >pdb|3UE8|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439 | Back alignment and structure |
|
| >pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-Glu: External Aldimine Form Length = 432 | Back alignment and structure |
|
| >pdb|3NRA|A Chain A, Crystal Structure Of An Aspartate Aminotransferase (Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15 A Resolution Length = 407 | Back alignment and structure |
|
| >pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A Modulator In Mal Gene Expression Length = 390 | Back alignment and structure |
|
| >pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With Ll-Dap: External Aldimine Form Length = 432 | Back alignment and structure |
|
| >pdb|2QLR|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii Length = 425 | Back alignment and structure |
|
| >pdb|2VGZ|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii Length = 427 | Back alignment and structure |
|
| >pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498 | Back alignment and structure |
|
| >pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate Aminotransferase Complexed With L-Histidinol Length = 356 | Back alignment and structure |
|
| >pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase Complexed With Pyridoxal 5'-Phosphate Length = 356 | Back alignment and structure |
|
| >pdb|3QGU|A Chain A, L,L-Diaminopimelate Aminotransferase From Chalmydomonas Reinhardtii Length = 449 | Back alignment and structure |
|
| >pdb|3CQ4|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Length = 376 | Back alignment and structure |
|
| >pdb|3CQ5|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum In Complex With Pmp Length = 369 | Back alignment and structure |
|
| >pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500 | Back alignment and structure |
|
| >pdb|3CQ6|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Holo-Form (Plp Covalently Bound ) Length = 369 | Back alignment and structure |
|
| >pdb|1WST|A Chain A, Crystal Structure Of Multiple Substrate Aminotransferase (Msat) From Thermococcus Profundus Length = 417 | Back alignment and structure |
|
| >pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Salmonella Enterica Length = 364 | Back alignment and structure |
|
| >pdb|3G0T|A Chain A, Crystal Structure Of Putative Aspartate Aminotransferase (Np_905498.1) From Porphyromonas Gingivalis W83 At 1.75 A Resolution Length = 437 | Back alignment and structure |
|
| >pdb|3FDB|A Chain A, Crystal Structure Of A Putative Plp-Dependent Beta-Cystathionase (Aecd, Dip1736) From Corynebacterium Diphtheriae At 1.99 A Resolution Length = 377 | Back alignment and structure |
|
| >pdb|1B4X|A Chain A, Aspartate Aminotransferase From E. Coli, C191s Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase Length = 544 | Back alignment and structure |
|
| >pdb|3AAT|A Chain A, Activity And Structure Of The Active-Site Mutants R386y And R386f Of Escherichia Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|2D5Y|A Chain A, Aspartate Aminotransferase Mutant Mc With Isovaleric Acid Length = 396 | Back alignment and structure |
|
| >pdb|1IX6|A Chain A, Aspartate Aminotransferase Active Site Mutant V39f Length = 396 | Back alignment and structure |
|
| >pdb|1ASL|A Chain A, Crystal Structures Of Escherichia Coli Aspartate Aminotransferase In Two Conformations: Comparison Of An Unliganded Open And Two Liganded Closed Forms Length = 396 | Back alignment and structure |
|
| >pdb|3EUC|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase (Yp_297314.1) From Ralstonia Eutropha Jmp134 At 2.05 A Resolution Length = 367 | Back alignment and structure |
|
| >pdb|2D64|A Chain A, Aspartate Aminotransferase Mutant Mabc With Isovaleric Acid Length = 396 | Back alignment and structure |
|
| >pdb|1AAM|A Chain A, The Structural Basis For The Altered Substrate Specificity Of The R292d Active Site Mutant Of Aspartate Aminotransferase From E. Coli Length = 396 | Back alignment and structure |
|
| >pdb|1QIT|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191w Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|2D66|A Chain A, Aspartate Aminotransferase Mutant Mab Length = 396 | Back alignment and structure |
|
| >pdb|2D61|A Chain A, Aspartate Aminotransferase Mutant Ma With Maleic Acid Length = 396 | Back alignment and structure |
|
| >pdb|1YOO|A Chain A, Aspartate Aminotransferase Mutant Atb17 With Isovaleric Acid Length = 396 | Back alignment and structure |
|
| >pdb|1QIR|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191y Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|1CZC|A Chain A, Aspartate Aminotransferase Mutant Atb17139S142N WITH GLUTARIC ACID Length = 396 | Back alignment and structure |
|
| >pdb|1ARI|A Chain A, Aspartate Aminotransferase, W140h Mutant, Maleate Complex Length = 396 | Back alignment and structure |
|
| >pdb|1QIS|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191f Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C. 2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus Ncfm At 2.15 A Resolution Length = 533 | Back alignment and structure |
|
| >pdb|1AHY|A Chain A, Aspartate Aminotransferase Hexamutant Length = 396 | Back alignment and structure |
|
| >pdb|1ASF|A Chain A, The Structural Basis For The Reduced Activity Of The Y226f(Y225f) Active Site Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|2EGY|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate Aminotransferase (Substrate Free Form), From Thermus Thermophilus Hb27 Length = 397 | Back alignment and structure |
|
| >pdb|3P1T|A Chain A, Crystal Structure Of A Putative Aminotransferase (Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60 A Resolution Length = 337 | Back alignment and structure |
|
| >pdb|3ZZJ|A Chain A, Structure Of An Engineered Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|1AIA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate Aminotransferase K258h Lacking The Pyridoxal-5'-Phosphate Binding Lysine Residue Length = 396 | Back alignment and structure |
|
| >pdb|4F5M|A Chain A, Wild-type E. Coli Aspartate Aminotransferase: A Template For The Interconversion Of Substrate Specificity And Activity To Tyrosine Aminotransferase By The Janus Algorithm. Length = 406 | Back alignment and structure |
|
| >pdb|2Q7W|A Chain A, Structural Studies Reveals The Inactivation Of E. Coli L-Aspartate Aminotransferase (S)-4,5-Amino-Dihydro-2-Thiophenecarboxylic Acid (Sadta) Via Two Mechanisms At Ph 6.0 Length = 396 | Back alignment and structure |
|
| >pdb|2AAT|A Chain A, 2.8-Angstroms-Resolution Crystal Structure Of An Active-Site Mutant Of Aspartate Aminotransferase From Escherichia Coli Length = 396 | Back alignment and structure |
|
| >pdb|4F5K|A Chain A, Substrate Specificity Conversion Of Aspartate Aminotransferase To Tyrosine Aminotransferase By The Janus Algorithm: Chimera P6. Length = 406 | Back alignment and structure |
|
| >pdb|3FFH|A Chain A, The Crystal Structure Of Histidinol-phosphate Aminotransferase From Listeria Innocua Clip11262. Length = 363 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 567 bits (1465), Expect = 0.0
Identities = 139/353 (39%), Positives = 213/353 (60%), Gaps = 1/353 (0%)
Query: 83 QPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQY 142
P +L + TTIFTQMS LA +H AINL QGFP+FDGP ++++ + G NQY
Sbjct: 4 NPLIPQSKLPQLGTTIFTQMSALAQQHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQY 63
Query: 143 ARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAP 202
A GV AIA + ++ G + D + ++TVT+G TEA+ A I L+ GDEVI F P
Sbjct: 64 APMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDP 123
Query: 203 FYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTRE 262
YDSY ++++G +K + L+PP F + +E + +S+ TR +++NTPHNP+ ++ +
Sbjct: 124 SYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQA 183
Query: 263 ELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGW 321
+ + +++ V SDEVY+ + F H S+ + P + ER V ++S GKT+ +TGW
Sbjct: 184 DFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGW 243
Query: 322 KIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILV 381
K+G+ +AP ++ +R+ H +LTF+ +TP Q A LRA +Y L Y K+ ILV
Sbjct: 244 KVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILV 303
Query: 382 EGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
LN ++ P GTYF++VD++ D+ FC++L +E GV AIP SVF
Sbjct: 304 NALNESRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFC 356
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 560 bits (1446), Expect = 0.0
Identities = 151/352 (42%), Positives = 209/352 (59%), Gaps = 3/352 (0%)
Query: 86 QVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARG 145
RL + TT+F +MS LA + GA+NLGQGFP+ DGP + AA AI G NQY G
Sbjct: 2 ATVSRLRPYATTVFAEMSALATRIGAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPPG 61
Query: 146 HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYD 205
G AIA++ ++ G++ DPE EV VT G TEAIAA +LGL+ PG EV+L PFYD
Sbjct: 62 PGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYD 121
Query: 206 SYEATLSMAGAKIKCITLRPP--DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREE 263
SY ++MAGA + L P FA+ + L+ ++ TRA+++N+PHNPTG + + E
Sbjct: 122 SYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATE 181
Query: 264 LNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWK 322
L IA + + +++V +DEVY+ L F+ H+ +A GM ERT+T++S K F+ TGWK
Sbjct: 182 LAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWK 241
Query: 323 IGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVE 382
IGWA P L GVR A +L++ P Q A AL + + L+ A++ L
Sbjct: 242 IGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAA 301
Query: 383 GLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
GL +GF V S GTYF+ D P G++ FC L ++VGV AIP S F
Sbjct: 302 GLTEIGFAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFC 353
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 535 bits (1381), Expect = 0.0
Identities = 137/382 (35%), Positives = 205/382 (53%), Gaps = 32/382 (8%)
Query: 85 QQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDG--KNQY 142
Q A+RL+ + + LA +H +NLGQGFP+F PDF +A A+ NQY
Sbjct: 4 QLQARRLDGIDYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQY 63
Query: 143 ARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAP 202
+ G P +AS F + G E+DP + V VT G A+ L++ GDEVI+ P
Sbjct: 64 TKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEP 123
Query: 203 FYDSYEATLSMAGAKIKCITLRP-----------PDFAIPIEELKSTISKNTRAILMNTP 251
F+D YE MAG + ++L+P ++ + EL + T+A+++NTP
Sbjct: 124 FFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTP 183
Query: 252 HNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMN 310
+NP GK+F+REEL ++ASLC ++DV+ +DEVY + ++ HISIASLPGM+ERT+T+
Sbjct: 184 NNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIG 243
Query: 311 SLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAAL-------RAPE 363
S GKTFS TGWK+GW + P H+ +R H F T Q A + R P
Sbjct: 244 SAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPS 303
Query: 364 TYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGH-----------ETD 412
+Y+ + + + ++ L +VG K G+YF++ D + F D
Sbjct: 304 SYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYD 363
Query: 413 IAFCEYLIKEVGVVAIPTSVFY 434
F +++IK G+VAIP S+FY
Sbjct: 364 RRFVKWMIKNKGLVAIPVSIFY 385
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 531 bits (1370), Expect = 0.0
Identities = 143/375 (38%), Positives = 208/375 (55%), Gaps = 28/375 (7%)
Query: 88 AKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQA-IRDGKNQYARGH 146
AKR+E + ++ + + LA +NLGQGFP+ P +VK+ +A D NQY RG
Sbjct: 2 AKRIEGLDSNVWVEFTKLAADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGF 61
Query: 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDS 206
G P A++ + K ++DP +E+ V G ++ +I GL++PGDEVI+ PFYD
Sbjct: 62 GHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDC 121
Query: 207 YEATLSMAGAKIKCITLRP----------PDFAIPIEELKSTISKNTRAILMNTPHNPTG 256
YE + MAGA I LR D+ EL+S S T+AI++NTPHNP G
Sbjct: 122 YEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLG 181
Query: 257 KMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKT 315
K++TR+EL VIA LC+++D L SDEVY+ L + H+ IA+LPGM+ERT+T+ S GKT
Sbjct: 182 KVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKT 241
Query: 316 FSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRA-------PETYYEE 368
FS+TGWK+GW+I P HL ++ + +TP+Q A A PE Y+
Sbjct: 242 FSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNS 301
Query: 369 LKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHET---------DIAFCEYL 419
L ++ K+ +V LN+VG K G YF++ D + G + D F +++
Sbjct: 302 LPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWM 361
Query: 420 IKEVGVVAIPTSVFY 434
K + AIP S F
Sbjct: 362 TKHKKLTAIPVSAFC 376
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 529 bits (1364), Expect = 0.0
Identities = 138/391 (35%), Positives = 206/391 (52%), Gaps = 30/391 (7%)
Query: 74 SDTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQ 133
S T +T + KR + +++ + LA ++ +NLGQGFP++ P + +A
Sbjct: 2 SSTSNETMHNKFDLPKRYQGSTKSVWVEYIQLAAQYKPLNLGQGFPDYHAPKYALNALAA 61
Query: 134 AIRD---GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL 190
A NQY RG G P A++ + + ++P EV VT G EA+ ATI G
Sbjct: 62 AANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGH 121
Query: 191 INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP---------PDFAIPIEELKSTISK 241
++ GDEVI+ PF+D YE + AG + I L+P D+ + EL++ ++
Sbjct: 122 VDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE 181
Query: 242 NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLP 300
T+ I++NTPHNP GK+ R EL V+A+LC + +VL SDEVY+ + FE +HI I +LP
Sbjct: 182 KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLP 241
Query: 301 GMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAA-- 358
GM+ERT+T+ S GKTFSLTGWKIGWA P L ++ H + +TP+Q A
Sbjct: 242 GMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFE 301
Query: 359 -----LRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHE--- 410
L++PE Y+ + + AK+ + L VG G YF+V D + +
Sbjct: 302 TELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDL 361
Query: 411 -------TDIAFCEYLIKEVGVVAIPTSVFY 434
D F +++ K VG+ IP S FY
Sbjct: 362 TQETDARKDYRFTKWMTKSVGLQGIPPSAFY 392
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 499 bits (1287), Expect = e-177
Identities = 124/353 (35%), Positives = 188/353 (53%), Gaps = 21/353 (5%)
Query: 86 QVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARG 145
++ R E K +IF +MS LA + GA+NLGQGFP+ P F+ +A +A+ ++QYA
Sbjct: 2 RLHPRTEAAKESIFPRMSGLAQRLGAVNLGQGFPSNPPPPFLLEAVRRAL-GRQDQYAPP 60
Query: 146 HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYD 205
G+P A+A V+PE V VTSG TEA+ + L+ PGDEV++ PF+D
Sbjct: 61 AGLPALREALAEE------FAVEPE-SVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFD 113
Query: 206 SYEATLSMAGAKIKCITLR--PPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREE 263
Y +AGAK + + L P F + + L+ ++ TRA+L+NTP NPTG +F E
Sbjct: 114 VYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERE 173
Query: 264 LNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKI 323
L IA L +D+ + SDEVYD+L + + ERT T+ S GK TG+++
Sbjct: 174 LEAIARLARAHDLFLISDEVYDELYYGERPRRLR--EFAPERTFTVGSAGKRLEATGYRV 231
Query: 324 GWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILV 381
GW + P + + +F+ TP+Q AL+ E +YE L+ Y ++ +L
Sbjct: 232 GWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLA 291
Query: 382 EGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
GL A+G +V+ GTYF++ + + L++E V IP S FY
Sbjct: 292 GGLRAMGLRVYVPEGTYFLMAELPGWD-------AFRLVEEARVALIPASAFY 337
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 495 bits (1277), Expect = e-175
Identities = 121/385 (31%), Positives = 198/385 (51%), Gaps = 39/385 (10%)
Query: 88 AKRLEKFKTTIFTQMSMLAIK---------HGAINLGQGFPNFDGPDFVKDAAIQAIR-D 137
+++ + A K INLGQGF ++ P F A +A+
Sbjct: 27 KYFTSNTAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFFSYSPPQFAIKEAQKALDIP 86
Query: 138 GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEV 197
NQY+ G P +++ + E+ E VTVT+G E I + ++GL+N GDEV
Sbjct: 87 MVNQYSPTRGRPSLINSLIKLYSPIYNTELKAE-NVTVTTGANEGILSCLMGLLNAGDEV 145
Query: 198 ILFAPFYDSYEATLSMAGAKIKCITLRPP-----------DFAIPIEELKSTISKNTRAI 246
I+F PF+D Y + + G K+ + + PP ++ I E+ + I+ T+A+
Sbjct: 146 IVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAV 205
Query: 247 LMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASL-PGMYER 305
++NTPHNP GK+FTREEL + ++C++++V++ SDEVY+ L F IA+L P + +
Sbjct: 206 IINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQL 265
Query: 306 TVTMNSLGKTFSLTGWKIGWAIAPP-HLTWGVRQAHSFLTFATSTPMQWAATAALR--AP 362
T+T+ S GK+F+ TGW+IGW ++ L +AH+ + FA+ +P+Q A ++
Sbjct: 266 TLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALK 325
Query: 363 ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHE------------ 410
Y+E+++++Y K I + +G GTYFV+VD +
Sbjct: 326 IGYFEKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNK 385
Query: 411 -TDIAFCEYLIKEVGVVAIPTSVFY 434
D +LI E+GVVAIP + FY
Sbjct: 386 GKDFRISHWLINELGVVAIPPTEFY 410
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 330 bits (849), Expect = e-111
Identities = 111/353 (31%), Positives = 193/353 (54%), Gaps = 6/353 (1%)
Query: 86 QVAKRLEKFKTTIFTQMSMLAIK-HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYAR 144
++ RLE + ++ +A I+LG G P+FD P +K+ A +A+ G Y
Sbjct: 2 ALSDRLELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGP 61
Query: 145 GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFY 204
G+ E AIA + KK +G+E DP+ E+ V G +A + + G+EV++ P +
Sbjct: 62 NIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAF 121
Query: 205 DSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREE 263
SY + +AG K + +F + ++ELK ++ TRA+++N+P NPTG + T+++
Sbjct: 122 VSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKD 181
Query: 264 LNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWK 322
L IA +E+D++V SDEVY+ ++ H SIASL GM+ERT+T+N KTF++TGW+
Sbjct: 182 LEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWR 241
Query: 323 IGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYY--EELKRDYSAKKAIL 380
+G+ AP + + + + T +Q+AA AL+ ++ EE++++Y ++ ++
Sbjct: 242 LGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLV 301
Query: 381 VEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
+ LN +G G +++ G T F E ++KE V +P S F
Sbjct: 302 WKRLNEMGLPTVKPKGAFYIFPRIRDTG-LTSKKFSELMLKEARVAVVPGSAF 353
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 314 bits (806), Expect = e-104
Identities = 84/349 (24%), Positives = 157/349 (44%), Gaps = 19/349 (5%)
Query: 88 AKRLEKFKTTIFTQMS--MLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARG 145
E F+ ++ + + I+L G P+F+ P + D I+++++GK Y
Sbjct: 6 LLNFESFEVMDILALAQKLESEGKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTDS 65
Query: 146 HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYD 205
G+ E I+ +K ++ P+ + +T G + + + +I+ GDEV++ P Y
Sbjct: 66 RGILELREKISELYKDKYKADIIPD-NIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYP 124
Query: 206 SYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELN 265
Y+ + GAK E L+ +S T+AI++N+P NP G++ RE
Sbjct: 125 CYKNFIRFLGAKPVFCDFTV-------ESLEEALSDKTKAIIINSPSNPLGEVIDRE--- 174
Query: 266 VIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGW 325
I EN + SDE+Y+ L +E S E+T+ +N K +++TGW+IG+
Sbjct: 175 -IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGY 233
Query: 326 AIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGL 384
I+ + + + L + T Q+AA A E + +++ ++ ++++ +
Sbjct: 234 VISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYV 293
Query: 385 NAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
G++V G Y+V + E F L+KE V P F
Sbjct: 294 KDFGWEVNNPIGAYYVFPNIG----EDGREFAYKLLKEKFVALTPGIGF 338
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 313 bits (804), Expect = e-104
Identities = 99/355 (27%), Positives = 179/355 (50%), Gaps = 14/355 (3%)
Query: 85 QQVAKRLEKFK---TTIFTQMS--MLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGK 139
V++R+ + T + ++ INL G P+F P+ V + A++ ++ G+
Sbjct: 12 HMVSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGE 71
Query: 140 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVIL 199
+Y G+ E IA R + ++ P+ +V VT+G +A+ + L++PGDEVI+
Sbjct: 72 VKYTDPRGIYELREGIAKRIGERYKKDISPD-QVVVTNGAKQALFNAFMALLDPGDEVIV 130
Query: 200 FAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKM 258
F+P + SY + +AG + + +F +EE++ + T+A+L+N+P+NPTG +
Sbjct: 131 FSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVV 190
Query: 259 FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSL 318
+ RE L + L + + + SDEVYD L + + SI + ++R V +N K+ S+
Sbjct: 191 YRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSM 250
Query: 319 TGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKA 378
TGW++G+ I+ + V + S T +T Q+AA AL + + + +K
Sbjct: 251 TGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDN---SYMVQTFKERKN 307
Query: 379 ILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
+VE L +G K G +++ D+ FCE L++E V +P S F
Sbjct: 308 FVVERLKKMGVKFVEPEGAFYLFFKVR----GDDVKFCERLLEEKKVALVPGSAF 358
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 312 bits (803), Expect = e-104
Identities = 59/339 (17%), Positives = 119/339 (35%), Gaps = 11/339 (3%)
Query: 105 LAIKHGAINLGQGFPNFDG--PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKD 162
I+ ++ G + P + G Y G +A R
Sbjct: 35 APIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAF 94
Query: 163 SGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCIT 222
+G VD + +T G A+ + + GD+V + P Y + + ++ +
Sbjct: 95 TGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQ 154
Query: 223 LRPP-----DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVL 277
L + + L+ R L + P+NP G +++ EE+ IA+L
Sbjct: 155 LDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGAT 214
Query: 278 VFSDEVYDKLAFE-MDHISIASLPGM-YERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG 335
V +D++Y +L + + + + + E VT+ KT SL+G+++G A +
Sbjct: 215 VIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIAR 274
Query: 336 VRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPS 394
+ + + ++ + Q + E+ + A + L+ L G
Sbjct: 275 MEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTP 334
Query: 395 SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
++ F + L + GVV P + F
Sbjct: 335 QAGSYLFPRLPKLA-VAPAEFVKILRLQAGVVVTPGTEF 372
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 306 bits (785), Expect = e-101
Identities = 84/363 (23%), Positives = 158/363 (43%), Gaps = 9/363 (2%)
Query: 78 QKTNLQPQ---QVAKRLEKFKTTIFTQMSMLAIKHG---AINLGQGFPNFDGPDFVKDAA 131
+ L P+ ++ +L + F + I+HG IN+ G P+ P + D
Sbjct: 10 HSSGLVPRGSHMISNKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIPDGPTPQGIIDHF 69
Query: 132 IQAIRDGKN-QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL 190
+A+ +N +Y HG F AI +++ + +D E EV + G + A +
Sbjct: 70 QKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCV 129
Query: 191 INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNT 250
INPGD V+L P Y Y A + +A K + L PP + ++ S I T+ I +
Sbjct: 130 INPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTY 189
Query: 251 PHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMN 310
P+NPTG T+E + + D + D Y F+ + SI + + + +
Sbjct: 190 PNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIY 249
Query: 311 SLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELK 370
SL K ++++G+++G+A+ + +++ + +Q AA AL + + EE
Sbjct: 250 SLSKGYNMSGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQS 309
Query: 371 RDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430
+ ++ L + G +V ++ TP G+ F ++L++E ++ P
Sbjct: 310 NVFKTRRDRFEAMLAKADLPFVHAKGGIYVWLE-TPPGY-DSEQFEQFLVQEKSILVAPG 367
Query: 431 SVF 433
F
Sbjct: 368 KPF 370
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 304 bits (782), Expect = e-101
Identities = 77/328 (23%), Positives = 130/328 (39%), Gaps = 19/328 (5%)
Query: 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDP 169
+L F + + ++ K Y G P F +++ + V P
Sbjct: 28 SISSLTLE-ELFALSGTNPEDFYKKLQGTKLNYGWIEGSPAFKKSVSQLYTG-----VKP 81
Query: 170 EKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD-F 228
E ++ T+G T A + LI PGD VI P Y GA++ + + +
Sbjct: 82 E-QILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGW 140
Query: 229 AIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLA 288
+E+L+ I T+ I +N +NPTG + R L + + E + SDEVY
Sbjct: 141 LPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSF- 199
Query: 289 FEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348
+ + S+ +Y++ + +NSL KT+SL G +IGW A +T +R +
Sbjct: 200 ---SELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAG 256
Query: 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVF-PSSGTY-FVVVDHT 405
A AL + E + AIL + + P+ + FV +
Sbjct: 257 VFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIA-- 314
Query: 406 PFGHETDIAFCEYLIKEVGVVAIPTSVF 433
FC L++E GV+ +P + F
Sbjct: 315 --VDMPMEDFCLQLLQEHGVLLVPGNRF 340
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 302 bits (775), Expect = 2e-99
Identities = 88/365 (24%), Positives = 169/365 (46%), Gaps = 13/365 (3%)
Query: 80 TNLQPQQVAKRLEKFKTTIFT---QMSMLAIKHGA--INLGQGFPNFDGPDFVKDAAIQA 134
+P + R+++ +F ++ M A + G I+L G P+ P + +
Sbjct: 3 AESRPARRFARIDRLPPYVFNITAELKMAARRRGEDIIDLSMGNPDGPTPPHIVEKLCTV 62
Query: 135 IRDGKN-QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINP 193
+ Y+ G+P AI+ ++ +++DPE E VT G E +A +L ++
Sbjct: 63 AQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDH 122
Query: 194 GDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPH 252
GD +++ P Y + +AGA+++ + L P DF +E R +++ P
Sbjct: 123 GDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPS 182
Query: 253 NPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNS 311
NPT + + + +L + DV+V D Y + ++ SI +PG + V +
Sbjct: 183 NPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFT 242
Query: 312 LGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKR 371
L K++++ GW+IG+ + P L + + S+ + T TP+Q AA AAL + ++ R
Sbjct: 243 LSKSYNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAR 302
Query: 372 DYSAKKAILVEGLNAVGFKVFPSSGTYFV---VVDHTPFGHETDIAFCEYLIKEVGVVAI 428
Y ++ +LV+GL G+ V + +V + + P+ H + F + L+++ V
Sbjct: 303 QYQQRRDVLVKGLREAGWMVENPKASMYVWAKIPE--PYAHLGSLEFAKKLLQDAKVSVS 360
Query: 429 PTSVF 433
P F
Sbjct: 361 PGIGF 365
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 301 bits (772), Expect = 1e-98
Identities = 65/401 (16%), Positives = 123/401 (30%), Gaps = 46/401 (11%)
Query: 77 IQKTNLQPQQVAKRLEKFKT----TIFTQMSMLAIKHGA--INLGQGFPNFDGPDFVKDA 130
I + ++ +Q ++ + ++ L G + G P P +
Sbjct: 6 IDEKLIREKQNELHIKDLGMASIRDLVALVTNLEKATGTKFCRMEMGVPGLPAPQIGIET 65
Query: 131 AIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189
IQ +R+G + Y G+PE + K +++ T G + + L
Sbjct: 66 EIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPAR-ACVPTVGSMQGCFVSFLV 124
Query: 190 ----LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD-FAIPIEELKSTISKNTR 244
N + P ++ + + G K + L + + +
Sbjct: 125 ANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFC 184
Query: 245 AILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD------HISIAS 298
+I+ + P+NPT + T EEL +I L ++DV+V D Y + F D + S
Sbjct: 185 SIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPS 244
Query: 299 LPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAH------------------ 340
+ + + S K FS G +IG + L
Sbjct: 245 VANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSAL 304
Query: 341 SFLTFATSTPMQWAATAALRAP---ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGT 397
L+ + QW A L+A E + + +Y K I+ + GF +
Sbjct: 305 YALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDG 364
Query: 398 Y-----FVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
G E ++ +
Sbjct: 365 NEPLADGFYFTVGYKG-MDSSKLIEKFVRYGMCAITLKTTG 404
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 296 bits (761), Expect = 2e-97
Identities = 101/372 (27%), Positives = 173/372 (46%), Gaps = 20/372 (5%)
Query: 78 QKTNLQPQQVAKRLEKFK--TTIFTQMS--MLAIKHGAINLGQGFPN---FDGPDFVKDA 130
+ + +KR + + + I L G P F P+ +K+A
Sbjct: 3 HHHHHGSIRASKRALSVEYAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEA 62
Query: 131 AIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL 190
+AI++G N Y G+PE AI R K+ +G+++ P+ +V VT+ TEA+ L
Sbjct: 63 YCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPD-DVRVTAAVTEALQLIFGAL 121
Query: 191 INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMN 249
++PGDE+++ P Y Y + G K D+ I++++ I+ T+AI +
Sbjct: 122 LDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVI 181
Query: 250 TPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTM 309
P+NPTG ++ ++ L I ++ E ++ V SDE+YD + +E +HIS SL + M
Sbjct: 182 NPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT-KDVPVIVM 240
Query: 310 NSLGKTFSLTGWKIGWAIA--PPHLTWGVRQAHSFLTFATS---TPMQWAATAALRAPET 364
N L K + TGW++G+ P + VR+A L TP Q+AA A L P
Sbjct: 241 NGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMD 300
Query: 365 YYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGT-Y-FVVVDHTPFGHETDIAFCEYLIK 421
Y +E + ++ + + LN + G G Y F ++ P+ + D F ++
Sbjct: 301 YLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPW--KNDKEFVLDVLH 358
Query: 422 EVGVVAIPTSVF 433
V+ + S F
Sbjct: 359 NAHVLFVHGSGF 370
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 294 bits (754), Expect = 2e-96
Identities = 86/375 (22%), Positives = 170/375 (45%), Gaps = 24/375 (6%)
Query: 74 SDTIQKTNLQPQQVAKRLEKFK---TTIFTQMSMLAIKHG--AINLGQGFPNFDGPDFVK 128
SD I + + R+ + + +A K G +L G P+ P+
Sbjct: 3 SDKIHHHHHHMDVFSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFF 62
Query: 129 DAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188
+ + Y+ G+ E A AS +K+ ++V PE V VT+G +EAI +
Sbjct: 63 ERIY-ENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPE-NVLVTNGGSEAILFSFA 120
Query: 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD-FAIPIEELKSTISKNTRAIL 247
+ NPGDE+++ PFY +Y A +AG K+ +T R + FAIP + L+S I++ T+ I+
Sbjct: 121 VIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIP-QNLESFINERTKGIV 179
Query: 248 MNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTV 307
++ P NPTG ++ ++E+ + + + + + DEVY ++ F + S S+ ++ V
Sbjct: 180 LSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSI--ESDKVV 237
Query: 308 TMNSLGKTFSLTGWKIGWAIAPPH--LTWGVRQAHSFLTFATSTPMQWAATAALRAPETY 365
++S+ K FS G ++G I ++ ++ A A Q + L +++
Sbjct: 238 VIDSVSKKFSACGARVGCLITRNEELISHAMKLAQG--RLAPPLLEQIGSVGLLNLDDSF 295
Query: 366 YEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEV- 423
++ ++ Y + +++ L + SG +++ + E F +++ +
Sbjct: 296 FDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAE---LPVEDAEEFARWMLTDFN 352
Query: 424 ----GVVAIPTSVFY 434
+ P FY
Sbjct: 353 MDGETTMVAPLRGFY 367
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 288 bits (739), Expect = 2e-94
Identities = 73/332 (21%), Positives = 128/332 (38%), Gaps = 11/332 (3%)
Query: 104 MLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDS 163
I++ G P P +A +++ Y G+P IA + +
Sbjct: 26 AEEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWY 85
Query: 164 GLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITL 223
G+++DP V +T G + L + GD V + AP Y SY L G +
Sbjct: 86 GVDLDPG-RVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPT 144
Query: 224 RPPD-FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDE 282
P + + + +++ +P NPTG M + + SDE
Sbjct: 145 APENRLQPVPADFAG---LDLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDE 201
Query: 283 VYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSF 342
+Y + +E ++ + + +NS K FS+TGW++GW + P V +
Sbjct: 202 IYHGIEYEAKAVTA---LELTDECYVINSFSKYFSMTGWRVGWMVVPEDQVRVVERIAQN 258
Query: 343 LTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGF-KVFPSSGTYFVV 401
+ Q AA AAL + Y A + +++E L GF ++ P G ++V
Sbjct: 259 MFICAPHASQVAALAALDCDA-ELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVY 317
Query: 402 VDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
D + + AF ++++ GV P F
Sbjct: 318 ADVSDLT-DDSRAFAAEILEKAGVAVTPGLDF 348
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 288 bits (739), Expect = 3e-94
Identities = 75/353 (21%), Positives = 144/353 (40%), Gaps = 34/353 (9%)
Query: 101 QMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRD----GKNQYARGHGVPEFNSAIA 156
+ + + K + G P+ P V D + + D + Y G E +AIA
Sbjct: 27 KRAAIVGKENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIA 86
Query: 157 SRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPG-DEVILFAPFYDSYEATLSMAG 215
G + + + +T G +++ L + DE I AP++ Y+ ++ AG
Sbjct: 87 EFLNNTHGTHFNAD-NLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAAG 145
Query: 216 AKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIEND 275
A++ + F I + L+ I+ +TR +++N+P+NP+G +++ E + ++ L +
Sbjct: 146 ARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKS 205
Query: 276 ------VLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP 329
+ + +DE Y ++ + D I + + Y+ T+ S K+ SL G +IG+ + P
Sbjct: 206 KEIGRPIFIIADEPYREIVY--DGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVP 263
Query: 330 PHLT-------WGVRQAHSFLTFATSTPMQWAATAALRAPE--TYYEELKRDYSAKKAIL 380
+ + + Q A Y+E RD L
Sbjct: 264 DEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATGDINAYKE-NRDL------L 316
Query: 381 VEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
EGL +G+ F G +++ V + AFCE +E V+ + F
Sbjct: 317 YEGLTRIGYHCFKPDGAFYMFVKAL---EDDSNAFCEKAKEE-DVLIVAADGF 365
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 284 bits (729), Expect = 9e-93
Identities = 96/328 (29%), Positives = 171/328 (52%), Gaps = 10/328 (3%)
Query: 112 INLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEK 171
+ G P+F+ P + +AA A+ GK +Y G P AIA + ++D+GL +
Sbjct: 33 CSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGAD- 91
Query: 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAI 230
+ VT+G ++I +L +I PGDEVI+ APF+ SY + +A + F +
Sbjct: 92 NILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKV 151
Query: 231 PIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE 290
E+++ I+ T+ ++ NTP NPTG ++T +E+ IA + +E + V SDE+Y+K+ ++
Sbjct: 152 SPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYD 211
Query: 291 -MDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVR--QAHSFLTFA 346
H+SI + P YER+V + KT+++TGW++G+ P L Q HS T
Sbjct: 212 DAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHS--TSN 269
Query: 347 TSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHT 405
T Q+ A AA + +E+ ++ ++ +++ LNA+ G + G +++
Sbjct: 270 VCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIA 329
Query: 406 PFGHETDIAFCEYLIKEVGVVAIPTSVF 433
G + + FC L+ + V +P + F
Sbjct: 330 KTG-RSSLDFCSELLDQHQVATVPGAAF 356
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 282 bits (724), Expect = 3e-92
Identities = 77/336 (22%), Positives = 134/336 (39%), Gaps = 8/336 (2%)
Query: 101 QMSMLAIKHGA--INLGQGFPNFDGPDFVKDAAIQAIRDGKN-QYARGHGVPEFNSAIAS 157
+ A + G I+L G + P+ A +A+ D Y F A
Sbjct: 15 EAKRKARERGVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAAR 74
Query: 158 RFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAK 217
++ G+ +DP +E G E +A +L L P D ++L Y SY +A +
Sbjct: 75 WYEGRYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLR 134
Query: 218 IKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVL 277
I LR D ++ + + + + +L+N P+NPTG + L ++ +
Sbjct: 135 TFLIPLRE-DGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLW 193
Query: 278 VFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVR 337
+ D Y +E + S +LPG ER V + SL K+++L G+++G+A+ +
Sbjct: 194 LIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLE 253
Query: 338 QAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGT 397
+ + F + AL+ P+ R Y + + E L + P T
Sbjct: 254 RVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKG-VLSLLPPRAT 312
Query: 398 YFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
++ P G D+ F L+ E GV P F
Sbjct: 313 MYLWG-RLPEGV-DDLEFGLRLV-ERGVALAPGRGF 345
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 279 bits (715), Expect = 9e-91
Identities = 111/328 (33%), Positives = 185/328 (56%), Gaps = 13/328 (3%)
Query: 112 INLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEK 171
+ L G P+FD P+ VK+AA +A+ GK +YA G+PE A+A +F++++GL V PE
Sbjct: 34 VALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPE- 92
Query: 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAI 230
E VT G ++A+ +++PGDEVI+ +P++ SY + AG + + P F
Sbjct: 93 ETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVP 152
Query: 231 PIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE 290
E ++ I+ T+A+++N+P+NPTG ++ +E L +A L +E+D + SDE+Y+ L +E
Sbjct: 153 DPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYE 212
Query: 291 MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVR--QAHSFLTFATS 348
+H S + E T+T+N K F++TGW+IG+A P + + S T +
Sbjct: 213 GEHFSPGRVAP--EHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQS--TTSPD 268
Query: 349 TPMQWAATAALR---APETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHT 405
T QWA AL A + E + Y ++ +L+EGL A+G K SG ++V++D +
Sbjct: 269 TIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTS 328
Query: 406 PFGHETDIAFCEYLIKEVGVVAIPTSVF 433
P ++ E L+ E GV +P + F
Sbjct: 329 PIA-PDEVRAAERLL-EAGVAVVPGTDF 354
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 277 bits (711), Expect = 9e-90
Identities = 76/364 (20%), Positives = 137/364 (37%), Gaps = 29/364 (7%)
Query: 97 TIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGK-----NQYARGHGVPEF 151
T+ I L G P D A I+ +++ N Y G PE
Sbjct: 21 TVSDNAKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEA 80
Query: 152 NSAIASRF------KKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYD 205
A+A+ + K++ + + V + SG + I I + + GD ++ P +
Sbjct: 81 REAVATWWRNSFVHKEELKSTIVKD-NVVLCSGGSHGILMAITAICDAGDYALVPQPGFP 139
Query: 206 SYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL 264
YE G + RP D+ ++E++ T+ +++ P NP G F+R+ +
Sbjct: 140 HYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHV 199
Query: 265 NVIASLCIENDVLVFSDEVYDKLAFE-----MDHISIASLPGMYERTVTMNSLGKTFSLT 319
I L E + +FSDE+Y + F+ S+A V + K +
Sbjct: 200 EDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTV-PRVILGGTAKNLVVP 258
Query: 320 GWKIGWAIA--PPHLTWGVRQAHSFLTFATS---TPMQWAA-TAALRAPETYYEELKRDY 373
GW++GW + P + + T +Q A A L P+ + +++
Sbjct: 259 GWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKI 318
Query: 374 SAKKAILVEGLNAV-GFKVFPSSGT-Y-FVVVDHTPFGH-ETDIAFCEYLIKEVGVVAIP 429
L + G G Y +D + +TD+ F E L++E V +P
Sbjct: 319 EESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLP 378
Query: 430 TSVF 433
++F
Sbjct: 379 GTIF 382
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 274 bits (704), Expect = 1e-88
Identities = 85/340 (25%), Positives = 146/340 (42%), Gaps = 21/340 (6%)
Query: 112 INLGQG----FPNFDGPDFVKDAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSGLE 166
I+L G F N V A A+ GK N YA G IAS +
Sbjct: 57 ISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCP-EAP 115
Query: 167 VDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP- 225
++ + +V +TSGC++AI + L NPG +++ P + Y+ G ++K L P
Sbjct: 116 LEAK-DVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPE 174
Query: 226 PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYD 285
+ I +++L+ I + T +++N P NP G +F++ L I ++ V + +DE+Y
Sbjct: 175 KSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYG 234
Query: 286 KLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG---VRQAHS 341
+ F + +A+L ++ L K + + GW++GW + +R
Sbjct: 235 DMVFSDCKYEPLATL-STDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLV 293
Query: 342 FLTFATS---TPMQWAATAAL-RAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSG 396
L+ T +Q A + L R P +Y + + L A+ G + SG
Sbjct: 294 KLSQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSG 353
Query: 397 T-Y-FVVVDHTPF-GHETDIAFCEYLIKEVGVVAIPTSVF 433
Y V ++ F E D+ F E L+ E V +P + F
Sbjct: 354 AMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCF 393
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 248 bits (636), Expect = 2e-78
Identities = 74/359 (20%), Positives = 136/359 (37%), Gaps = 35/359 (9%)
Query: 109 HGAINLGQGFPN----FDGPDFVKDAAIQAIRDGKN------QYARGHGVPEFNSAIASR 158
+G I +G ++ +G + HG+PEF AIA
Sbjct: 36 NGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKF 95
Query: 159 FKKDSG--LEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMA-G 215
+K G + DPE V + G T A I L +PGD ++ +P+Y ++ L G
Sbjct: 96 MEKTRGGRVRFDPE-RVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTG 154
Query: 216 AKIKCITLRPPD-FAIPIEELKSTISK------NTRAILMNTPHNPTGKMFTREELNVIA 268
++ I + F I + +K + +++ P NP G ++ L +
Sbjct: 155 VQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVL 214
Query: 269 SLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGM-------YERTVTMNSLGKTFSLTG 320
S ++++ + DE+Y F+ +SIA + + + SL K L G
Sbjct: 215 SFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG 274
Query: 321 WKIGWAIA-PPHLTWGVRQAHSFLTFATSTPMQWAATAALRA-PETYYEELKRDYSAKKA 378
+++G + + R+ SF +T T AA + + + E +
Sbjct: 275 FRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHK 334
Query: 379 ILVEGLNAVGFKVFPSSGTYFVVVDHTPF----GHETDIAFCEYLIKEVGVVAIPTSVF 433
GL VG K ++ F +D P +++++ +I +V + P S F
Sbjct: 335 HFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSF 393
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 246 bits (630), Expect = 2e-77
Identities = 76/364 (20%), Positives = 134/364 (36%), Gaps = 42/364 (11%)
Query: 109 HGAINLGQGFPN----FDGPDFVK-------DAAIQAIRDGKNQYARGHGVPEFNSAIAS 157
+G I +G K ++I + HG+P F A+
Sbjct: 38 NGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVD 97
Query: 158 RFKK--DSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMA- 214
+ + + DP + +T+G T A I L +PG+ V++ P+Y ++ L
Sbjct: 98 FMAEIRGNKVTFDPN-HLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRT 156
Query: 215 GAKIKCITLRPPD-FAIPIEELKSTI------SKNTRAILMNTPHNPTGKMFTREELNVI 267
G +I I + F I L+ + + +L+ P NP G TR EL ++
Sbjct: 157 GVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLL 216
Query: 268 ASLCIENDVLVFSDEVYDKLAFE-MDHISIASL---------PGMYERTVTMNSLGKTFS 317
S + + + SDE+Y AF IS+ + +++R + SL K
Sbjct: 217 LSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLG 276
Query: 318 LTGWKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRA---PETYYEELKRDY 373
L G+++G + + + SF S+ Q +A L + Y E +
Sbjct: 277 LPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQHLLSAMLSDKKLTKNYIAENHKRL 334
Query: 374 SAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPF----GHETDIAFCEYLIKEVGVVAIP 429
++ LV GL G + F VD E ++ + ++ EV + P
Sbjct: 335 KQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISP 394
Query: 430 TSVF 433
S
Sbjct: 395 GSSC 398
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 241 bits (616), Expect = 3e-74
Identities = 62/419 (14%), Positives = 128/419 (30%), Gaps = 76/419 (18%)
Query: 83 QPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQY 142
+ + R E++ Q + + +++ + D F+ + + Y
Sbjct: 79 KIDGIEGRFERYIAENRDQEGVRFLG-KSLSYVRDQLGLDPAAFLHEMVDGILGCN---Y 134
Query: 143 ARGHGVPEFNSAIASRF-KKDSGLEVDPEKE--VTVTSGCTEAI-----AATILGLINPG 194
+ + I ++ ++ G + P + + G T A+ + + GL+ G
Sbjct: 135 PVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAG 194
Query: 195 DEVILFAPFYDSYEATLSMAGAKIKCITLRPP---DFAIPIEELKSTISKNTRAILMNTP 251
D+V + P + Y +A ++ + + ++ P EL + P
Sbjct: 195 DKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNP 254
Query: 252 HNPTGKMFTREELNVIASLCIEN--DVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTM 309
NP + L + ++ E+ D+++ +D+VY A D S+ ++ E T+ +
Sbjct: 255 SNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFAD--DFQSLFAI--CPENTLLV 310
Query: 310 NSLGKTFSLTGWKIGWAIAPPHL------------------------------------- 332
S K F TGW++G A
Sbjct: 311 YSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRL 370
Query: 333 TWGVRQAHSFLTFATSTP----MQWAATAALRAPETYYEELKRDYSAKKAILVEGLN--- 385
R T STP M + AL Y+ + ++ +
Sbjct: 371 VADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELGMP 430
Query: 386 ------AVGFKVFPS-----SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
AV + + Y + + E G+V +P F
Sbjct: 431 PLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGF 489
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 235 bits (601), Expect = 1e-73
Identities = 72/338 (21%), Positives = 120/338 (35%), Gaps = 29/338 (8%)
Query: 112 INLGQGFPNFDGPDFVKDAAIQAIRDGKN-----QYARGHGVPEFNSAIASRFKKDSGLE 166
INL G V +A +I + Y G+P ++ F +
Sbjct: 36 INLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYR----G 91
Query: 167 VDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAK-IKCITLRP 225
KE+ ++ G + +L P V + P Y +Y + GAK I +
Sbjct: 92 FVDAKEIFISDGAKVDLFR-LLSFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQ 150
Query: 226 P-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVY 284
F E + + + +P+NPTG + +++L I IE+++L+ D Y
Sbjct: 151 ENAFFPEFPEDT-----HIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAY 205
Query: 285 DKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA---- 339
+ SI +P + +NS K G ++GW + P LT+
Sbjct: 206 STFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQD 265
Query: 340 ----HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSS 395
S S P Q A A L E Y +L + L A GF+VF
Sbjct: 266 WERFLSTTFNGASIPAQEAGVAGLSILPQ--LEAIHYYRENSDLLRKALLATGFEVFGGE 323
Query: 396 GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
++ V T +D ++ ++E + P F
Sbjct: 324 HAPYLWVKPTQANI-SDRDLFDFFLREYHIAITPGIGF 360
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 238 bits (610), Expect = 2e-73
Identities = 71/424 (16%), Positives = 134/424 (31%), Gaps = 83/424 (19%)
Query: 83 QPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQY 142
+ +RL F I A+N + V + A+ + Y
Sbjct: 79 NTDGIRERLFAFLDPDKNDEDKFLI--DAVNYCHTELGLNRDKVVAEWVNGAVANN---Y 133
Query: 143 ARGHGVPEFNSAIASRFKKDS---GLEVDPEKEVTVTSGCTEAI-----AATILGLINPG 194
I + F ++ + + ++ T G T AI + L+ G
Sbjct: 134 PVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKG 193
Query: 195 DEVILFAPFYDSYEATLSMAGAK---IKCITLRPPDFAIPIEELKSTISKNTRAILMNTP 251
D++ + P + Y + + + + D+ I E++ + +A+++ P
Sbjct: 194 DKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNP 253
Query: 252 HNPTGKMFTREELNVIASLCIEN-DVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMN 310
NPT K F LN I +N +++ SDEVY + SI S+ + T+ +
Sbjct: 254 TNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVP--NFKSIYSV--VPYNTMLVY 309
Query: 311 SLGKTFSLTGWKIGWAIAPPHL----------TWGVRQAHSFLTFATSTPMQWAA----- 355
S K F TGW++G +RQ H + P +
Sbjct: 310 SYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLC 369
Query: 356 ----------TAALRAP----------------------ETYYEELKRDYSAKKAILVEG 383
TA L P + Y + ++ S + L +
Sbjct: 370 ADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDA 429
Query: 384 LNAVGFKVFPSSGTYFVVVDHTPFG--------------HETDIAFCEYLIKEVGVVAIP 429
+ A + + Y+ ++D + + F L ++ GVV +
Sbjct: 430 MQAPKDETDT-NTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVD 488
Query: 430 TSVF 433
F
Sbjct: 489 GVGF 492
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 1e-68
Identities = 72/383 (18%), Positives = 129/383 (33%), Gaps = 47/383 (12%)
Query: 86 QVAKRLEKFKTT-IFTQMSMLAIKHGA-------INLGQGFPNFDGPDFVKDAAIQAIRD 137
+ K + +F +++ H I+LG G P+ + A + +
Sbjct: 25 SRNSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKKAHE 84
Query: 138 GKN-----QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLIN 192
Y G +AIA F G+ D +V V+ G I+ + +
Sbjct: 85 LSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDD---DVFVSDGAKCDISR-LQVMFG 140
Query: 193 PGDEVILFAPFYDSYEATLSMAG------------AKIKCITLRP-PDFAIPIEELKSTI 239
+ + P Y +Y + + G I+ + P F + +
Sbjct: 141 SNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVG--- 197
Query: 240 SKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASL 299
T I +P+NPTG TRE+L + +N ++ D Y + + SI +
Sbjct: 198 --RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEI 255
Query: 300 PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA--------HSFLTFATSTPM 351
PG E + S TG ++GW + P L + S
Sbjct: 256 PGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNIS 315
Query: 352 QWAATAALR-APETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHE 410
Q A A L ++ Y I+++ ++G+ V+ +V V H P
Sbjct: 316 QAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYGGKNAPYVWV-HFPNQ-- 372
Query: 411 TDIAFCEYLIKEVGVVAIPTSVF 433
+ ++++ VV P S F
Sbjct: 373 SSWDVFAEILEKTHVVTTPGSGF 395
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 3e-65
Identities = 75/422 (17%), Positives = 135/422 (31%), Gaps = 50/422 (11%)
Query: 46 NTRRRGISTTCPRYPSLMASLSTVSTNQSDTIQKTNLQPQQVAKRLEKFKTT-IFTQMS- 103
R ++ + ++ V + ++Q + K + +F +++
Sbjct: 2 QLNVRSTASGARS-STRSRRMTAVVQAVAQRAGTIDVQR---NENFGKLRAGYLFPEIAR 57
Query: 104 --MLAIKHGA----INLGQGFPNFDGPDFVKDAAIQAIRDGKNQ-----YARGHGVPEFN 152
+ I+LG G P ++ DA +A + Y G
Sbjct: 58 RRKAHQEKNPDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALR 117
Query: 153 SAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLS 212
A+AS F +G E+ ++ G IA I + V + P Y Y T
Sbjct: 118 EAVASTFYGHAG---RAADEIFISDGSKCDIAR-IQMMFGSKPTVAVQDPSYPVYVDTSV 173
Query: 213 MAGAKIKCITLRPP-----------DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTR 261
M G F + + K T I +P+NPTG TR
Sbjct: 174 MMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAK-----RTDIIFFCSPNNPTGAAATR 228
Query: 262 EELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTG 320
+L + + +N ++ D Y D +I +PG E + S K TG
Sbjct: 229 AQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTG 288
Query: 321 WKIGWAIAPPHLTWGVRQA--------HSFLTFATSTPMQWAATAALRAP-ETYYEELKR 371
++GW + P L + + + S +Q A L+ + +
Sbjct: 289 VRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIK 348
Query: 372 DYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431
Y IL +GF V+ ++ V P + +++ +V P S
Sbjct: 349 FYKENAQILKTTFTEMGFSVYGGDDAPYIWV-GFP--GKPSWDVFAEILERCNIVTTPGS 405
Query: 432 VF 433
+
Sbjct: 406 GY 407
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 2e-64
Identities = 62/401 (15%), Positives = 133/401 (33%), Gaps = 51/401 (12%)
Query: 81 NLQPQQVAKRLEKFKTTIFTQMSMLAI---------------KHGAINLGQGFPNFDGPD 125
N Q + ++L++ T F +S L K N G
Sbjct: 4 NPLAQSLNEQLQQSNATAFAMLSDLGQNMFYPKGILSQSAEAKSTTYNATIGMATNKDGK 63
Query: 126 FVKDAAIQAIR----DGKNQYARGHGVPEFNSAIASR-FKKDSGLEVDPEKEVTVTSGCT 180
+ D YA G+ E + + + L +D VT+ T
Sbjct: 64 MFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALT 123
Query: 181 EAIAATILGLINPGDEVILFAPFYDSYEATLSMA-GAKIKCITLRPPDFAIPIEELKSTI 239
++ +N D ++L + +Y+ + GA ++ + D + L +
Sbjct: 124 HGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEAL 183
Query: 240 S---KNTRAILMNTPHNPTGKMFTREELNVIASLCIE-----NDVLVFSDEVYDKLAFEM 291
K+ +++N P+NPTG T +E+ I V+ D+ Y L +E
Sbjct: 184 QSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYED 243
Query: 292 DH-----ISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH----LTWGVRQAHSF 342
+ ++ +L + ++ K F G+++G+ +
Sbjct: 244 VYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGL 303
Query: 343 LTFATS---TPMQWAATAALRAPETYYEELKRD-------YSAKKAILVEGLNAVGFKVF 392
+ S P Q A L+ + + +E++++ Y K ++ ++ +
Sbjct: 304 IRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAY 363
Query: 393 PSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
+ YF+ + A ++LI + + I +
Sbjct: 364 DFNSGYFMAIKVHD---VDPEALRKHLIDKYSIGVIALNAT 401
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 3e-62
Identities = 78/359 (21%), Positives = 147/359 (40%), Gaps = 23/359 (6%)
Query: 88 AKRLEKFKTTIFTQMSML--AIKHGA----INLGQGFPNFDGPDFVKDAAIQAIRDGKNQ 141
L++ K F ++ I + L G P P + DA ++ + +
Sbjct: 3 NTLLKQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLHE-LEK 61
Query: 142 YARGHGVPEFNSAIASRFKKD-SGLEVDPEKEVTVTSGCTEAIAATILGLINP-----GD 195
Y G+PE A A+ K+ GL VD + E+ G EA+ + + ++NP
Sbjct: 62 YPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKP 121
Query: 196 EVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPT 255
++ PFY YE + G +I P F + + K T+ + + +P+NP+
Sbjct: 122 AIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPS 181
Query: 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH-ISI----ASLPGMYERTVTMN 310
G + + + L + ++ SDE Y ++ F+ + + A L ++ +
Sbjct: 182 GSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFT 241
Query: 311 SLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELK 370
SL K ++ G + G+ L ++ A S P+Q A+ AA E + + +
Sbjct: 242 SLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWD-DEQHVIDNR 300
Query: 371 RDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429
R Y K ++ L V F V ++++ + P G D+AF L ++ + +P
Sbjct: 301 RLYQEKFERVIPILQQV-FDVKLPDASFYIWLK-VPDG--DDLAFARNLWQKAAIQVLP 355
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 7e-61
Identities = 64/326 (19%), Positives = 129/326 (39%), Gaps = 23/326 (7%)
Query: 112 INLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEK 171
++LG G P F+ P F++DA N Y + +A FK+ +E+
Sbjct: 26 LDLGIGEPQFETPKFIQDALKNHT-HSLNIYPKSAFEESLRAAQRGFFKRRFKIELKEN- 83
Query: 172 EVTVTSGCTEAIA--ATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDF 228
E+ T G E + + + + PFY YE AK + L DF
Sbjct: 84 ELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDF 143
Query: 229 AIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLA 288
+ E + +++N+P+NPTG+ + EEL L +++D ++ +DE Y ++
Sbjct: 144 TPSLNEK---ELQEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIY 200
Query: 289 FEMDHISI-----ASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL 343
S+ + ++ + ++SL K S G + G+ L + ++L
Sbjct: 201 ENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFRAYL 260
Query: 344 TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVD 403
+ ++ +Q A+ AA + + E + Y+ + + +++V +
Sbjct: 261 GYTSANAIQKASEAAWL-DDRHAEFFRNIYANNLKLARKIF----KNTLIYPYSFYVYLP 315
Query: 404 HTPFGHETDIAFCEYLIKEVGVVAIP 429
F + L + G++ +P
Sbjct: 316 VQ-----NGENFAKTLYQNEGIITLP 336
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 7e-60
Identities = 43/365 (11%), Positives = 98/365 (26%), Gaps = 63/365 (17%)
Query: 107 IKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQ-----YARGHGV--PEFNSAIASRF 159
I+ + ++ G F + + A+ + E I
Sbjct: 54 IQGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIK-EL 112
Query: 160 KKDSGLEVDPEKEVTVTSGCTEAIAATILGL--------INPGDEVILFAPFYDSYEATL 211
+ G ++ + G T+ I ++ L P +V+ APFY +
Sbjct: 113 HEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQ- 171
Query: 212 SMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLC 271
K + +A + + ++ +P+NP G +
Sbjct: 172 ------TKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH----------- 214
Query: 272 IENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA-PP 330
V+ +YD + + + I + + + ++ K +G + GWA+
Sbjct: 215 ---AVIKGCKSIYDMVYYWPHYTPI---KYKADEDILLFTMSKFTGHSGSRFGWALIKDE 268
Query: 331 HLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYS--------------AK 376
+ + + T T Q + L+ + K
Sbjct: 269 SVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVN 328
Query: 377 KAILVEGLNAVGFKVFPSSGTY-FVVVDHTPFG-------HETDIAFCEYLIKEVGVVAI 428
L++ + ++ P S + P + C + +
Sbjct: 329 ITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQ 388
Query: 429 PTSVF 433
F
Sbjct: 389 NGVGF 393
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 1e-55
Identities = 61/381 (16%), Positives = 115/381 (30%), Gaps = 55/381 (14%)
Query: 103 SMLAIKHGAINLGQGFPNF-DGPDFVKDAAIQAIRDGKN-------------QYARGHGV 148
L LG G P D + + +A+ + + Y+ G
Sbjct: 26 DALKSDQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGD 85
Query: 149 PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI---------------AATILGLINP 193
F A+ F + + E + +T+G A +
Sbjct: 86 SAFIDALVGFFNRHYDWNLTSE-NIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVD 144
Query: 194 GDEVILFAPFYDSY------EATLSMAGAKIKCITLRPPDFAIP-------IEELKSTIS 240
++ P Y Y + I +T + +E L +
Sbjct: 145 KSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKE 204
Query: 241 KNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLP 300
AI + P NPTG + T EE+ +A + D+ + D Y + +
Sbjct: 205 GRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAH--L 262
Query: 301 GMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALR 360
T+ SL K L G + G +A + V ++ + A + AT +
Sbjct: 263 NWDNNTILCFSLSKIG-LPGMRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVA 321
Query: 361 ---APETYYEELKRDYSAKKAILVEGLNA----VGFKVFPSSGTYFVVVDHTPFGHETDI 413
+ E+K Y + + V+ L + G F+ + + +
Sbjct: 322 NDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPI-STL 380
Query: 414 AFCEYLIKEVGVVAIPTSVFY 434
E L + G + +P+ F+
Sbjct: 381 DLYERLKAK-GTLIVPSEYFF 400
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 8e-55
Identities = 61/376 (16%), Positives = 121/376 (32%), Gaps = 38/376 (10%)
Query: 88 AKRLEKFK--TTIFTQMSMLAIKHGAINLGQGFPNFDGP--DFVKDAAIQAIRDGKN--- 140
+ + T + ++ GAI LG G P D+ + + GK
Sbjct: 8 GDKFTRHSGITRLMEDLNDGLRTPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADA 67
Query: 141 --QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDE-- 196
Y G +A+A ++ G +++P+ + +T+G A +
Sbjct: 68 LCNYDGPQGKTALLNALAVLLRETLGWDIEPQ-NIALTNGSQSAFFYLFNLFAGRRADGS 126
Query: 197 ----VILFAPFYDSY----EATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILM 248
+ AP Y Y A+ L F ++ I + T I +
Sbjct: 127 TKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLHIGEETGMICV 186
Query: 249 NTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVT 308
+ P NPTG + T EEL + L ++++ + D Y + F I + ++ +
Sbjct: 187 SRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYG-VPF--PGIIFSEARPLWNPNII 243
Query: 309 MNSLGKTFS---LTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRA---P 362
+ + S L G + G IA + + ++ A ++
Sbjct: 244 LCM---SLSKLGLPGSRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLL 300
Query: 363 ETYYEELKRDYSAKKAILVEGL----NAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEY 418
+K Y + + + + + G F+ + T +
Sbjct: 301 RLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLW-FKDLPITTELLYQR 359
Query: 419 LIKEVGVVAIPTSVFY 434
L GV+ +P F+
Sbjct: 360 LKAR-GVLMVPGHYFF 374
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 2e-53
Identities = 69/380 (18%), Positives = 133/380 (35%), Gaps = 45/380 (11%)
Query: 97 TIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQ--YARGHGVPEFNSA 154
T F ++ L + + F + I A+ G+ Y+ G+ A
Sbjct: 83 TFFREVLALCDHPDLLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDA 142
Query: 155 IASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI-NPGDEVILFAPFYDSYEATLSM 213
IAS G + + ++ +T G + + + LI N D +++ P Y Y A++++
Sbjct: 143 IASGIASRDGFPANAD-DIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIAL 201
Query: 214 AGAKIKCITLRPP-DFAIPIEELKSTISK------NTRAILMNTPHNPTGKMFTREELNV 266
G + L + + ++K + N RA+++ P NPTG++ E
Sbjct: 202 HGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYD 261
Query: 267 IASLCIENDVLVFSDEVYDKLAF--EMDHISIASL---PGMYER---TVTMNSLGKT-FS 317
I C +++ +DEVY + + S + G E V+ S+ K +
Sbjct: 262 IVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYG 321
Query: 318 LTGWKIGWAIAP---PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYS 374
G + G+ + + + S + ++ Q A+ + P+ E +
Sbjct: 322 ECGKRGGYFEITGFSAPVREQIYKIAS-VNLCSNITGQILASLVMNPPKASDESYASYKA 380
Query: 375 AKKAI----------LVEGLNAV----------GFKVFPS-SGTYFVVVDHTPFGHETDI 413
K I L N + VFP + D
Sbjct: 381 EKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDA 440
Query: 414 AFCEYLIKEVGVVAIPTSVF 433
+ L++ G+V +P S F
Sbjct: 441 FYALRLLESTGIVVVPGSGF 460
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 1e-50
Identities = 71/375 (18%), Positives = 138/375 (36%), Gaps = 54/375 (14%)
Query: 111 AINLGQGFPNFDGPDFVKDAAIQAIR-------DGKNQYARGHGVPEFNSAIASRF-KKD 162
+ L D P F +DA +A R + Y+ GV +A+ ++D
Sbjct: 87 VMALCTYPNLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRD 146
Query: 163 SGLEVDPEKEVTVTSGCTEAIAATILGLINPGDE----VILFAPFYDSYEATLSMAGAKI 218
G+ DP+ + +T+G ++ I+ + L++ G + V++ P Y Y A +S A
Sbjct: 147 GGVPADPD-NIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQ 205
Query: 219 KCITLRPP-DFAIPIEELKSTISK-----NTRAILMNTPHNPTGKMFTREELNVIASLCI 272
L +A+ + EL+ + + + + + + P NPTG++ +R+ + +
Sbjct: 206 VNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAW 265
Query: 273 ENDVLVFSDEVYDKLAFEMD--HISIASL-----PGMYERT--VTMNSLGKTF-SLTGWK 322
E + + +DEVY + D S + P + +S K + G++
Sbjct: 266 EEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYR 325
Query: 323 IGWAI---APPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP---ETYYEELKRDYSAK 376
G+ P + + + S Q A + P E +E+ R+ +
Sbjct: 326 GGYMEVINLHPEIKGQLVKLLSVRLCP-PVSGQAAMDIVVNPPVAGEESFEQFSREKESV 384
Query: 377 KA-------ILVEGLNAV----------GFKVFPS-SGTYFVVVDHTPFGHETDIAFCEY 418
+ + N V FP V D+ +C
Sbjct: 385 LGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMK 444
Query: 419 LIKEVGVVAIPTSVF 433
L++E G+ +P S F
Sbjct: 445 LLEETGICVVPGSGF 459
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 1e-44
Identities = 44/359 (12%), Positives = 97/359 (27%), Gaps = 55/359 (15%)
Query: 107 IKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQ----YARGHGVPEFNS-----AIAS 157
+ +NL G P + K + ++ + F AI
Sbjct: 20 MSDFVVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKD 79
Query: 158 RFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDE----VILFAPFYDSYEATLSM 213
+ + V +G T+ A + L + V+ APFY +Y +
Sbjct: 80 LHGVVGNAATEDR-YIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTY 138
Query: 214 AGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIE 273
+ + + K L+ +P+NP G + RE + + +
Sbjct: 139 VRS---------GMYKWEGDAWGF-DKKGPYIELVTSPNNPDGTI--RET---VVNRPDD 183
Query: 274 NDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL- 332
++ V D Y + + + + + + K G +IGWA+
Sbjct: 184 DEAKVIHDFAYYWPHY-------TPITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEV 236
Query: 333 TWGVRQAHSFLTFATSTPMQWAATAALRA----------PETYYEELKRDYSAKKAILVE 382
+ + + S Q L E +++ + + L E
Sbjct: 237 AKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLRE 296
Query: 383 GLNAVGFKVFPS---SGTYFVVVDHTP-----FGHETDIAFCEYLIKEVGVVAIPTSVF 433
+ P + + + + ++ V++
Sbjct: 297 VVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRHKVMSRAGERC 355
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 2e-42
Identities = 63/317 (19%), Positives = 106/317 (33%), Gaps = 28/317 (8%)
Query: 121 FDGPDFVKDAAIQAIRDGKNQYARGHGV-------PEFNSAIASRFKKDSGLEVDPEKEV 173
F V A A++ + A A + G + PE +
Sbjct: 35 FSTCPAVLQAITDAVQ---------REAFGYQPDGSLLSQATAEFYADRYGYQARPE-WI 84
Query: 174 TVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIE 233
+ I +VI+ P Y + LS + I +
Sbjct: 85 FPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQREG---IFIDATGGINLH 141
Query: 234 ELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH 293
+++ R+IL+ P+NP G +F E LN + L D V DE++ L F+ H
Sbjct: 142 DVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQH 201
Query: 294 ISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLTFATSTPM 351
A + +T+ + K +++ G K I P +Q + ST
Sbjct: 202 TVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLG 261
Query: 352 QWAATAALRAPETYYEELKRDY-SAKKAILVEGLNAV--GFKVFPSSGTYFVVVDHTPFG 408
AA AA R + + Y L+ + G K+ P TY + +D
Sbjct: 262 LIAAEAAYRYGTDFLNQE-VAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTT 320
Query: 409 HETDIAFCEYLIKEVGV 425
E + E+ I++ V
Sbjct: 321 IEGSPS--EFFIEKAKV 335
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 4e-40
Identities = 60/322 (18%), Positives = 133/322 (41%), Gaps = 30/322 (9%)
Query: 121 FDGPDFVKDAAIQAIRDGKNQYARGHGV-------PEFNSAIASRFKKDSGLEVDPEKEV 173
F + D+ + + +N +I + + ++ E +
Sbjct: 44 FKAAPCIIDSLKNRLE---------QEIYGYTTRPDSYNESIVNWLYRRHNWKIKSE-WL 93
Query: 174 TVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD---FAI 230
+ G AI+ I L D++++ P Y + + + ++ L+ + + +
Sbjct: 94 IYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIM 153
Query: 231 PIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE 290
E++++ I IL N PHNP G+++T++EL + +C++++V + SDE++ + +
Sbjct: 154 DYEDIENKIKDVKLFILCN-PHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILK 212
Query: 291 -MDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLTFAT 347
HI +AS+ + T+T + KTF++ G + + + P + A + +
Sbjct: 213 KHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKR 272
Query: 348 STPM-QWAATAALRAPETYYEELKRDYSAK-KAILVEGLNAV--GFKVFPSSGTYFVVVD 403
+ A A+ E++ E +Y ++ +N KV GTY + VD
Sbjct: 273 NNCFSLVATEASYNNGESWLESF-LEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVD 331
Query: 404 HTPFGHETDIAFCEYLIKEVGV 425
+ G + L+++ V
Sbjct: 332 FSALGLSDE-ELESILVQKGKV 352
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 4e-40
Identities = 74/321 (23%), Positives = 134/321 (41%), Gaps = 28/321 (8%)
Query: 121 FDGPDFVKDAAIQAIRDGKNQYARGHGV-------PEFNSAIASRFKKDSGLEVDPEKEV 173
F +K+A I R + + A+ +K+ V E ++
Sbjct: 73 FLPVPEIKEAIINYGR---------EHIFGYNYFNDDLYQAVIDWERKEHDYAVVKE-DI 122
Query: 174 TVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD--FAIP 231
G AI+ + GD V++ +P Y + T+ + ++ +L+ + F I
Sbjct: 123 LFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEID 182
Query: 232 IEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE 290
E+L+ I N + L+ +PHNP G+++ ++L IA LC ++ V++ SDE++ LA
Sbjct: 183 FEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALF 242
Query: 291 -MDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLTFAT 347
H S+ +L + T+ ++S KTF++ G K +AI L +
Sbjct: 243 GNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHE 302
Query: 348 STPM-QWAATAALRAPETYYEELKRDYSAK-KAILVEGLNAV-GFKVFPSSGTYFVVVDH 404
+ A AA + + + EEL + ++++ L A KV GTY V +D
Sbjct: 303 VPTVGMIATQAAFQYGKPWLEEL-KTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDF 361
Query: 405 TPFGHETDIAFCEYLIKEVGV 425
+ + E L E V
Sbjct: 362 SAYAIAQP-QLSEKLQNEAKV 381
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 7e-40
Identities = 59/322 (18%), Positives = 124/322 (38%), Gaps = 29/322 (9%)
Query: 121 FDGPDFVKDAAIQAIRDGKNQYARGHGV-------PEFNSAIASRFKKDSGLEVDPEKEV 173
F P + + + + V E+ + K ++ + +
Sbjct: 43 FKNPPELIEGLKKYLD---------ETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTD-WI 92
Query: 174 TVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD--FAIP 231
T+G A+ + PGD VI+ P Y + + KI L D + I
Sbjct: 93 INTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTID 152
Query: 232 IEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE 290
++L+ N +A+L +PHNP G+++ ++EL I + +++D++++SDE++ L
Sbjct: 153 FQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMP 212
Query: 291 -MDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLTFAT 347
+H S+ + ++T+T + KTF++ G + I P + ++ +
Sbjct: 213 GYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMP 272
Query: 348 STPM-QWAATAALRAPETYYEELKRDYSAK-KAILVEGLNAV--GFKVFPSSGTYFVVVD 403
T + A + + + K + I+ + K GTY +D
Sbjct: 273 FTTLGYKACEICYKECGKWLDGC-IKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWID 331
Query: 404 HTPFGHETDIAFCEYLIKEVGV 425
+ A E++I + +
Sbjct: 332 FRALKMDHK-AMEEFMIHKAQI 352
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 1e-39
Identities = 68/322 (21%), Positives = 128/322 (39%), Gaps = 29/322 (9%)
Query: 121 FDGPDFVKDAAIQAIRDGKNQYARGHGV-------PEFNSAIASRFKKDSGLEVDPEKEV 173
F + + + ++ E+ A+A + + +
Sbjct: 39 FKIAPEIMASMEEKLK---------VAAFGYESVPAEYYKAVADWEEIEHRARPKED-WC 88
Query: 174 TVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD--FAIP 231
SG AI+A + +PGD++++ P Y+ + + + G ++ L + +++
Sbjct: 89 VFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVN 148
Query: 232 IEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE 290
+L+ ++ + R ++ PHNP G ++ EE+ IA LC ++ VL+ SDE++ L
Sbjct: 149 WADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLT 208
Query: 291 -MDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLTFAT 347
D ++ V++ S KTF+L AI P P L ++
Sbjct: 209 DEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGE 268
Query: 348 STPM-QWAATAALRAPETYYEELKRDYSAK-KAILVEGLNAV--GFKVFPSSGTYFVVVD 403
+ AA AA + EL + A E L KV S+ +Y VD
Sbjct: 269 PNLLAIPAAIAAYEEGHDWLREL-KQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVD 327
Query: 404 HTPFGHETDIAFCEYLIKEVGV 425
+ G + FC+YL ++ G+
Sbjct: 328 ISALGMNAE-DFCKYLREKTGL 348
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 2e-39
Identities = 73/322 (22%), Positives = 129/322 (40%), Gaps = 29/322 (9%)
Query: 121 FDGPDFVKDAAIQAIRDGKNQYARGHGV-------PEFNSAIASRFKKDSGLEVDPEKEV 173
F+ VK A V E A+ K + D E ++
Sbjct: 43 FEVMPEVKQAIHDYAE---------QLVYGYTYASDELLQAVLDWEKSEHQYSFDKE-DI 92
Query: 174 TVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD--FAIP 231
G AI+ I G+ V++ +P Y + ++ + K+ +L+ + F I
Sbjct: 93 VFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQID 152
Query: 232 IEELKSTISKN-TRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE 290
E+L++ I +N + L+ PHNP G+++ RE L I LC ++ V++ SDE++ L
Sbjct: 153 FEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLF 212
Query: 291 -MDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLTFAT 347
+H+S ++ P + + ++S KTF++ G K +AI P L +
Sbjct: 213 GHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHE 272
Query: 348 STPM-QWAATAALRAPETYYEELKRDYSAK-KAILVEGLNAV--GFKVFPSSGTYFVVVD 403
+ + A A R + + L + + VE KV GTY + +D
Sbjct: 273 VSSLGYIATETAYRYGKPWLVAL-KAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLIWLD 331
Query: 404 HTPFGHETDIAFCEYLIKEVGV 425
+ +G D A L + V
Sbjct: 332 FSDYGLTDD-ALFTLLHDQAKV 352
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 6e-39
Identities = 66/323 (20%), Positives = 125/323 (38%), Gaps = 32/323 (9%)
Query: 121 FDGPDFVKDAAIQAIRDGKNQYARGHGV--------PEFNSAIASRFKKDSGLEVDPEKE 172
F + +A Q + HGV EF +AIA F +D +
Sbjct: 40 FATAPCIIEALNQRLM---------HGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQ-T 89
Query: 173 VTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD--FAI 230
V ++ I G+ V++ P YD++ + + + L +
Sbjct: 90 VVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFC 149
Query: 231 PIEELKSTISKN-TRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAF 289
+ +L++ ++K + +L+ +P NPTGK++T +EL ++A LC + V V SDE++ + +
Sbjct: 150 DMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVW 209
Query: 290 -EMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLTFAT 347
E HI +++ + S K+F++ + I A +
Sbjct: 210 GEQPHIPWSNVA--RGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLS 267
Query: 348 STPM--QWAATAALRAPETYYEELKRDY-SAKKAILVEGLNAV--GFKVFPSSGTYFVVV 402
S + A AA + + + L R Y + + +NA TY +
Sbjct: 268 SPSVLALTAHIAAYQQGAPWLDAL-RIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWL 326
Query: 403 DHTPFGHETDIAFCEYLIKEVGV 425
D P + + A + LI++ V
Sbjct: 327 DLRPLNIDDN-ALQKALIEQEKV 348
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 2e-38
Identities = 52/308 (16%), Positives = 108/308 (35%), Gaps = 30/308 (9%)
Query: 124 PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183
P VK A I + D +Y + A+A + V + +G TE+I
Sbjct: 39 PVSVKRALIDNL-DCIERYPDADY-FHLHQALARHHQ------VPAS-WILAGNGETESI 89
Query: 184 AATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNT 243
+ ++ P + Y L+ +G +I+ +LR D + + ++ +
Sbjct: 90 --FTVASGLKPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALTPDL 147
Query: 244 RAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303
+ + TP+NPTG + R L IA C ++ + DE + + F
Sbjct: 148 DCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAF--IDFIPHETGFIPALKDN 205
Query: 304 ERTVTMNSLGKTFSLTGWKIGWAIAPPHLT----WGVRQAHSFLTFATSTPMQWAATAAL 359
+ SL K +++ G ++G+ + + ++ + A AL
Sbjct: 206 PHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQM-----PWSVNALAALAGEVAL 260
Query: 360 RAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEY 418
+ + + + A + L + V+P Y ++ DI
Sbjct: 261 QDSA-WQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLL--RCE---REDIDLQRR 314
Query: 419 LIKEVGVV 426
L+ + ++
Sbjct: 315 LLTQ-RIL 321
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 1e-36
Identities = 81/348 (23%), Positives = 138/348 (39%), Gaps = 34/348 (9%)
Query: 109 HGAINLGQGFPN---FDGPDFVKDAAIQAIRDGKN--QYARGHGVPEFNSAIASRFKKDS 163
I+L G P+ + + A + + Y +G+PE +A+ KK
Sbjct: 34 VKLISLAAGDPDPELIP-RAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYD 92
Query: 164 GLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITL 223
LEV PE + +T G T A+ LI+PGD VI P Y + GAKI+ + +
Sbjct: 93 HLEVSPE-NIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPV 151
Query: 224 RPPDFAIPIEELKSTISKNTRAI-------LMNTPHNPTGKMFTREELNVIASLCIENDV 276
+ + ++ L+ I + + T NP G + E + + + D+
Sbjct: 152 D--NDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDL 209
Query: 277 LVFSDEVYDKLAFEMDHI-SIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG 335
L+ D Y+ + +E I + +L R + +L K TG++IGW IA +
Sbjct: 210 LIIEDTAYNFMRYEGGDIVPLKALDN-EGRVIVAGTLSKVLG-TGFRIGWIIAEGEILKK 267
Query: 336 VRQAHSFLTFATSTPMQWAATAALRA---PETYYEELKRDYSAKKAILVEGLNAVGFKVF 392
V + F Q+ A L+ + + E Y K+ I+++ L
Sbjct: 268 VLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALE----NHL 323
Query: 393 PS------SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
P+ FV+ P G + +F L++ GVV +P FY
Sbjct: 324 PNAEFTKPIAGMFVMFF-LPEGADGI-SFANELMEREGVVVVPGKPFY 369
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 1e-34
Identities = 57/320 (17%), Positives = 112/320 (35%), Gaps = 23/320 (7%)
Query: 85 QQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPN---FDGPDFVKDAAIQAIRDGKN- 140
+++K + K++I ++ A AI+ G G P+ F + + A + I +
Sbjct: 19 GKISKIGQNMKSSIIREILKFAADKDAISFGGGVPDPETFPRKEL-AEIAKEIIEKEYHY 77
Query: 141 --QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVI 198
QY+ G P I ++ G+ E + T G +A+ ++ +
Sbjct: 78 TLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCV 137
Query: 199 LFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTP------- 251
L P Y A + L D + + L+ +S+ + +
Sbjct: 138 LDDPAYLGAINAFRQYLANFVVVPLE--DDGMDLNVLERKLSEFDKNGKIKQVKFIYVVS 195
Query: 252 --HNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHI-SIASLPGMYERTVT 308
HNP G + E+ + + + D+ + D+ Y L +E + + I + G ER V
Sbjct: 196 NFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKI-GGPERVVL 254
Query: 309 MNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYY 366
+N+ K + G +IG + QA + A L
Sbjct: 255 LNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQL 313
Query: 367 EELKRDYSAKKAILVEGLNA 386
+ Y K+ +++ L
Sbjct: 314 KPTIELYRRKRTVMLNALEE 333
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 129 bits (328), Expect = 2e-34
Identities = 52/307 (16%), Positives = 102/307 (33%), Gaps = 37/307 (12%)
Query: 124 PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183
D ++ ++ + + Y +A R VD + VT+G T A
Sbjct: 30 KDHLEKHLVENL-NCIRHYPEPDA-GTLRQMLAKRNS------VDNN-AILVTNGPTAAF 80
Query: 184 AATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNT 243
G ++ P + YE M ++ E++ N
Sbjct: 81 YQIAQAF--RGSRSLIAIPSFAEYEDACRMYEHEVCFYPSN--------EDIGEADFSNM 130
Query: 244 RAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303
+ P+NP G++ R E+ + L D D+ Y ++F + + +
Sbjct: 131 DFCWLCNPNNPDGRLLQRTEILRL--LNDHPDTTFVLDQSY--VSFTTEEVIRPADIKGR 186
Query: 304 ERTVTMNSLGKTFSLTGWKIGWAIAPPHLT---WGVRQAHSFLTFATSTPMQWAATAALR 360
+ V + S + + G +IG+ +A +A + AA L
Sbjct: 187 KNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFST-----PWAVNALAIEAAKFILI 241
Query: 361 APETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYL 419
P + R + + LN + G +V PS T F ++ T +Y+
Sbjct: 242 HPA-QFTLPIRKWQRNTVDFITALNRLDGVEVHPSG-TTFFLLR---LKKGTAAELKKYM 296
Query: 420 IKEVGVV 426
++E ++
Sbjct: 297 LEEYNML 303
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-33
Identities = 63/310 (20%), Positives = 111/310 (35%), Gaps = 38/310 (12%)
Query: 130 AAIQAIRDGKNQYAR---GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186
AI+ +R N+ E S +A ++K V E + + +G + I
Sbjct: 47 KAIECLRQNANKAHLYPDDSM-IELKSTLAQKYK------VQNE-NIIIGAGSDQVIEFA 98
Query: 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAI 246
I +N + + + YE GAK ++L T + I
Sbjct: 99 IHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSIT-HNLDEFKKLYETHKDEIKLI 157
Query: 247 LMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD---HISIASLPGMY 303
+ P+NP G+ E + D LV D Y++ A D H+ L +
Sbjct: 158 FLCLPNNPLGECLDASEATEFIKG-VNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEF 216
Query: 304 ERTVTMNSLGKTFS----LTGWKIGWAIAPPHLT---WGVRQAHSFLTFATSTPMQWAAT 356
+ + + TFS L G +IG+ IA ++ + +R F S AA
Sbjct: 217 DNVLYL----GTFSKLYGLGGLRIGYGIANANIISAFYKLRAP-----FNVSNLALKAAV 267
Query: 357 AALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFC 416
AA+ E + E+ + ++ + E K+ S F+ F +
Sbjct: 268 AAMDDDE-FTEKTLENNFSQMELYKEFAKKHNIKIIDSYTN-FITYF---FDEKNSTDLS 322
Query: 417 EYLIKEVGVV 426
E L+K+ G++
Sbjct: 323 EKLLKK-GII 331
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 3e-33
Identities = 54/305 (17%), Positives = 114/305 (37%), Gaps = 32/305 (10%)
Query: 130 AAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189
AA + N+YA+ + +A+ + V+ + +T+G +E I A I
Sbjct: 36 AAARDAVVKANRYAKNEI-LMLGNKLAAHHQ------VEAP-SILLTAGSSEGIRAAIEA 87
Query: 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNT--RAIL 247
+ ++++ Y E +AG K+ + + ++A IE LK+ ++ + +
Sbjct: 88 YASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKML-DNWAFDIEGLKAAVAAYSGPSIVY 146
Query: 248 MNTPHNPTGKMFTREELNVIASLC--IENDVLVFSDEVYDKLAFEMDHIS-IASLPGMYE 304
+ P+NPTG + + I + + DE Y + + S + E
Sbjct: 147 LVNPNNPTGTITPADV---IEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAE 203
Query: 305 RTVTMNSLGKTFSLTGWKIGWAIAPPHLT---WGVRQAHSFLTFATSTPMQWAATAALRA 361
+ + + K ++ G ++G+A+A P + + AA A++
Sbjct: 204 NIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVAG-----EKINFSGVDAALASMND 258
Query: 362 PETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIK 421
+ K+ + IL++ L + PS G FV + ++
Sbjct: 259 SA-FITYSKKSNDVSRQILLKALEDLKLPYLPSEGN-FVFHQ---LVVPLK-DYQTHMAD 312
Query: 422 EVGVV 426
GV+
Sbjct: 313 A-GVL 316
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 3e-33
Identities = 71/369 (19%), Positives = 135/369 (36%), Gaps = 37/369 (10%)
Query: 85 QQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPN---FDGPDFVKDAAIQAIRDGKN- 140
+ K + + + ++ L + G ++ G P F + +AA + +R+
Sbjct: 8 EAFGKGAGRIQASTIRELLKLTQRPGILSFAGGLPAPELFPKEEA-AEAAARILREKGEV 66
Query: 141 --QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVI 198
QY+ G + +A + V PE EV +T+G +A+ ++ G V+
Sbjct: 67 ALQYSPTEGYAPLRAFVAE------WIGVRPE-EVLITTGSQQALDLVGKVFLDEGSPVL 119
Query: 199 LFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTP--HNPTG 256
L AP Y + G + + + ++ L+ + + L P NPTG
Sbjct: 120 LEAPSYMGAIQAFRLQGPRFLTVPAG--EEGPDLDALEEVLKRERPRFLYLIPSFQNPTG 177
Query: 257 KMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHI-SIASL--PGMYERTVTMNSLG 313
+ + + +E ++V D+ Y +L F + S+ L Y + + S
Sbjct: 178 GLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFS 237
Query: 314 KTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP-ETYYEELKRD 372
K S G ++ +A+A P + QA T Q L+ E ++R
Sbjct: 238 KVLS-PGLRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRV 296
Query: 373 YSAKKAILVEGLNAVGFKVFPS-------SGTYFVVVDHTPFGHETDIAFCEYLIKEVGV 425
Y K ++ L+ + P G FV + P G + ++E V
Sbjct: 297 YREKAQAMLHALD----REVPKEVRYTRPKGGMFVWM-ELPKGLSAE-GLFRRALEE-NV 349
Query: 426 VAIPTSVFY 434
+P F+
Sbjct: 350 AFVPGGPFF 358
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 7e-33
Identities = 73/374 (19%), Positives = 138/374 (36%), Gaps = 37/374 (9%)
Query: 84 PQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPN---FDGPDFVKDAAIQAIRDGKN 140
+ +K+ + + + ++ L I+L G PN F +D ++ + +
Sbjct: 51 ERFFSKKALEMRASEVRELLKLVETSDIISLAGGLPNPKTFPKEII-RDILVEIMEKYAD 109
Query: 141 ---QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEV 197
QY G + K ++ +TSG +A+ +NPGD V
Sbjct: 110 KALQYGTTKGFTPLRETLMKWLGKR-YGISQDN-DIMITSGSQQALDLIGRVFLNPGDIV 167
Query: 198 ILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAI-------LMNT 250
++ AP Y + + + I L D + +E L+ + + + T
Sbjct: 168 VVEAPTYLAALQAFNFYEPQYIQIPLD--DEGMKVEILEEKLKELKSQGKKVKVVYTVPT 225
Query: 251 PHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHI-SIASLPGMYERTVTM 309
NP G + + L E D +V D+ Y +L + + I +L R + +
Sbjct: 226 FQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDN-EGRVIYL 284
Query: 310 NSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYE 367
+ K + G++IGW + P + + A T+ Q A + E +
Sbjct: 285 GTFSKILA-PGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIP 343
Query: 368 ELKRDYSAKKAILVEGLNAVGFKVFPSS-------GTYFVVVDHTPFGHETDIAFCEYLI 420
E+++ Y ++ ++E L + P G F+ V P G ++ E I
Sbjct: 344 EIRKFYKPRRDAMLEALE----EFMPEGVKWTKPEGGMFIWV-TLPDGIDSK-KMLERAI 397
Query: 421 KEVGVVAIPTSVFY 434
K+ GV +P FY
Sbjct: 398 KK-GVAYVPGEAFY 410
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 2e-32
Identities = 58/311 (18%), Positives = 110/311 (35%), Gaps = 43/311 (13%)
Query: 129 DAAIQAIRDGKNQYAR---GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185
+ + I +G + N +I + K + + + +G +E I
Sbjct: 42 KSFLNNIDEGIKNLGVYPDVNY-RRLNKSIENYLK------LKDI-GIVLGNGASEIIEL 93
Query: 186 TILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRA 245
I+ +++++ P Y YE G + L + I E++ S I
Sbjct: 94 ----SISLFEKILIIVPSYAEYEINAKKHGVSVVFSYLDE-NMCIDYEDIISKIDDVDSV 148
Query: 246 ILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAF----EMDHISIASLPG 301
I+ N P+NP G + +E+ + L E + DE AF S
Sbjct: 149 IIGN-PNNPNGGLINKEKFIHVLKLAEEKKKTIIIDE-----AFIEFTGDPSSSFVGEIK 202
Query: 302 MYERTVTMNSLGKTFSLTGWKIGWAIA-PPHLT---WGVRQAHSFLTFATSTPMQWAATA 357
Y + ++ K F++ G + G+ I + + + + + AA
Sbjct: 203 NYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQN-----PWNINCFAEMAAIN 257
Query: 358 ALRAPETYYEELKRDYSAKKAILVEGLNAVGF--KVFPSSGTYFVVVDHTPFGHETDIAF 415
L+ Y EE ++ +E LN +GF +VF FV+ + +
Sbjct: 258 CLKDTN-YIEESLLWIKKERKRFIEELNKIGFIKRVFSPHAN-FVLCR---LENISGEKL 312
Query: 416 CEYLIKEVGVV 426
+ L+KE +V
Sbjct: 313 YDSLLKE-DIV 322
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 1e-31
Identities = 60/308 (19%), Positives = 111/308 (36%), Gaps = 38/308 (12%)
Query: 130 AAIQAIRDGKNQYAR---GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186
+ + G +A ++ ++ E E+ T+G E I
Sbjct: 49 KVAAIQANSSVETEIYPDGWA-SSLRKEVADFYQ------LEEE-ELIFTAGVDELIELL 100
Query: 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAI 246
L++ ++ P + Y + GA+++ I L D +E + + I + T +
Sbjct: 101 TRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQ-DGEHDLEGMLNAIDEKTTIV 159
Query: 247 LMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERT 306
+ P+NPTG ++ + +DVLV DE Y + L Y+
Sbjct: 160 WICNPNNPTGNYIELADIQAFLD-RVPSDVLVVLDEAYIEYV-TPQPEKHEKLVRTYKNL 217
Query: 307 VTMNSLGKTFS----LTGWKIGWAIAPPHLT---WGVRQAHSFLTFATSTPMQWAATAAL 359
+ +TFS L ++G+ IA + VR F T++ Q A A+
Sbjct: 218 IIT----RTFSKIYGLASARVGYGIADKEIIRQLNIVRPP-----FNTTSIGQKLAIEAI 268
Query: 360 RAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEY 418
+ + E + + K++P++G FV++D G E Y
Sbjct: 269 KDQA-FIGECRTSNANGIKQYEAFAKRFEKVKLYPANGN-FVLID---LGIEAG-TIFSY 322
Query: 419 LIKEVGVV 426
L K G +
Sbjct: 323 LEKN-GYI 329
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 9e-30
Identities = 54/288 (18%), Positives = 99/288 (34%), Gaps = 22/288 (7%)
Query: 124 PDFVKDAAIQAIRDGKNQYAR---GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180
+ + + + + R V E +A+ K +G+ V + + +G
Sbjct: 45 SEALVADLVATVDKIATELNRYPERDAV-ELRDELAAYITKQTGVAVTRD-NLWAANGSN 102
Query: 181 EAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS 240
E + + PG + F P Y + + ++ DF I ++ I
Sbjct: 103 EILQQLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRG-ADFRIDMDVALEEIR 161
Query: 241 K-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASL 299
+ + TP+NPTG + + ++ + + +V DE Y F + L
Sbjct: 162 AKQPDIVFVTTPNNPTGDVTSLDD---VERIINVAPGIVIVDEAY--AEFSPSPSATTLL 216
Query: 300 PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT---WGVRQAHSFLTFATSTPMQWAAT 356
+ V ++ K F G ++G+ +A P VR + S Q AA
Sbjct: 217 EKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRLP-----YHLSALSQAAAI 271
Query: 357 AALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDH 404
ALR S ++ + L +G+ V PS FV
Sbjct: 272 VALRHSA-DTLGTVEKLSVERVRVAARLEELGYAVVPSESN-FVFFGD 317
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-29
Identities = 60/284 (21%), Positives = 96/284 (33%), Gaps = 33/284 (11%)
Query: 127 VKDAAIQAIRDGKNQYAR---GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183
V A ++ + + + DP + + +G E +
Sbjct: 44 VVKAILEELGPDGAALRIYPSASS-QKLREVAGELYG------FDPS-WIIMANGSDEVL 95
Query: 184 AATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNT 243
I G+E+ P Y Y + GA+++ L DF I
Sbjct: 96 NNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTG-DFRIAGF----PERYEG 150
Query: 244 RAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303
+ + TP+ P G F E I L ++ DE Y + A + L +
Sbjct: 151 KVFFLTTPNAPLGPSFPLEY---IDELARRCAGMLVLDETYAEFAES----NALELVRRH 203
Query: 304 ERTVTMNSLGKTFSLTGWKIGWAIAPPHLT---WGVRQAHSFLTFATSTPMQWAATAALR 360
E V +L K++SL G +IG AIA P + +R + Q A AALR
Sbjct: 204 ENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRDH-----YNLDRLAQAACVAALR 258
Query: 361 APETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDH 404
Y E R + L ++G+ V PS G ++
Sbjct: 259 DQA-YLSECCRRIRETREWFTTELRSIGYDVIPSQGN-YLFATP 300
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 80/373 (21%), Positives = 130/373 (34%), Gaps = 60/373 (16%)
Query: 108 KHGAINLGQGFPNFDGPD-FVKDAAIQAIRDGKN------------QYARGHGVPEFNSA 154
I+L G PN P+ F A+ + +GK QY+ G+PE S
Sbjct: 30 PKSMISLAGGLPN---PNMFPFKTAVITVENGKTIQFGEEMMKRALQYSPSAGIPELLSW 86
Query: 155 IASRFKK-------DSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSY 207
+ K ++ VTSG + + +INPGD V+L P Y
Sbjct: 87 LKQLQIKLHNPPTIHYPPSQGQM-DLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGT 145
Query: 208 EATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTP-------------HNP 254
+L G I + + I + L+ +S+ N +NP
Sbjct: 146 LQSLHPLGCNIINVASD--ESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNP 203
Query: 255 TGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHI-SIASLPGMYERTVTMNSLG 313
TG T E I L + D L+ D+ Y L F + + S+ + R + +S
Sbjct: 204 TGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSM-DVDGRVIRADSFS 262
Query: 314 KTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALR--APETYYE---E 368
K S +G +IG+ P L V T ST Q + L E +
Sbjct: 263 KIIS-SGLRIGFLTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDR 321
Query: 369 LKRDYSAKKAILVEGLNAVGFKVFPSSGTY-------FVVVDHTPFGHETDIAFCEYLIK 421
+ YS +K ++ + K + F+ + ++ E +K
Sbjct: 322 VIDFYSNQKDAILAAAD----KWLTGLAEWHVPAAGMFLWI-KVKGINDVKELIEEKAVK 376
Query: 422 EVGVVAIPTSVFY 434
GV+ +P + FY
Sbjct: 377 M-GVLMLPGNAFY 388
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 3e-27
Identities = 50/283 (17%), Positives = 90/283 (31%), Gaps = 35/283 (12%)
Query: 130 AAIQAIRDGKNQYAR---GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186
AI + R P +A F + + + G E
Sbjct: 33 RVQAAIAAAAARINRYPFDAE-PRVMRKLAEHFS------CPED-NLMLVRGIDECFDRI 84
Query: 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAI 246
+ P +D Y A ++++G + I L D + +L +
Sbjct: 85 SAEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTD-DLLLDPNDLAQVS--RDDCV 139
Query: 247 LMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERT 306
++ P NPTG+ + EL+ + + + DE Y + L E
Sbjct: 140 VLANPSNPTGQALSAGELDQLR----QRAGKLLIDETY----VDYSSFRARGLAY-GENE 190
Query: 307 VTMNSLGKTFSLTGWKIGWAIAPPHLT---WGVRQAHSFLTFATSTPMQWAATAALRAPE 363
+ S K++ L G ++G P L + T A AAL
Sbjct: 191 LVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQWF-----CNVGTLDLHALEAALDNDR 245
Query: 364 TYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTP 406
E A++ + + L +G++V S FV+V++
Sbjct: 246 -AREAHIAKTLAQRRRVADALRGLGYRVASSEAN-FVLVENAA 286
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 57/293 (19%), Positives = 106/293 (36%), Gaps = 28/293 (9%)
Query: 121 FDGPDFVKDAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGC 179
+ P ++ + + N+Y + + + V EV + +G
Sbjct: 42 YRLPPALRSELAARLGEVALNRYPVPSS-EALRAKLKEVMQ------VPAGMEVLLGNGS 94
Query: 180 TEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTI 239
E I+ L PG +V+ P + Y + AG + + LR DF + + + +
Sbjct: 95 DEIISMLALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLR-ADFTLDRGAMLAAM 153
Query: 240 SK-NTRAILMNTPHNPTGKMFTREELNVIASLC--IENDVLVFSDEVYDKLAFEMDHISI 296
++ + + P+NPTG +F ++ I LV DE Y S
Sbjct: 154 AEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAY----QPFAQESW 209
Query: 297 ASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT---WGVRQAHSFLTFATSTPMQW 353
S + + M ++ K L G ++G+ P VR + + +
Sbjct: 210 MSRLTDFGNLLVMRTVSK-LGLAGIRLGYVAGDPQWLEQLDKVRPP-----YNVNVLTEA 263
Query: 354 AATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHT 405
A AL +E A+++ + EG+ A G VFPS+ F++
Sbjct: 264 TALFALEHVA-VLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAAN-FLLARVP 314
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-26
Identities = 71/310 (22%), Positives = 107/310 (34%), Gaps = 38/310 (12%)
Query: 121 FDGPDFVKDAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGC 179
F P+ + D + + Y E I S D + V+V +G
Sbjct: 31 FPFPEDLVDEVFRRLNSDALRIYYDSPDE-ELIEKILSYLDTDF---LSKN-NVSVGNGA 85
Query: 180 TEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTI 239
E I ++ D + F P Y Y GAK + L D IP
Sbjct: 86 DEIIYV----MMLMFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTK-DLRIPEV-----N 135
Query: 240 SKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASL 299
+ + P+NPTG +F REE+ I ++ V DE Y +E S
Sbjct: 136 VGEGDVVFIPNPNNPTGHVFEREEIERI----LKTGAFVALDEAY----YEFHGESYVDF 187
Query: 300 PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT---WGVRQAHSFLTFATSTPMQWAAT 356
YE + + K FSL ++G+ +A VR F S Q A
Sbjct: 188 LKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLP-----FNVSYVSQMFAK 242
Query: 357 AALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFC 416
AL E +EE + ++ + L +G+++ S G FV V E
Sbjct: 243 VALDHRE-IFEERTKFIVEERERMKSALREMGYRITDSRGN-FVFVFMEKEEKE---RLL 297
Query: 417 EYLIKEVGVV 426
E+L + V
Sbjct: 298 EHLRTK-NVA 306
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 60/392 (15%), Positives = 112/392 (28%), Gaps = 65/392 (16%)
Query: 88 AKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPN---FDGPDFVKDAAIQAI---RDGKN- 140
A+R+ F I + L K+ ++L +G P+ D D + + DG +
Sbjct: 12 AERIGLFHEDIKRKFDELKSKNLKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDV 71
Query: 141 -QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG---------- 189
Y G+ + A L V E +V + I ++
Sbjct: 72 RNYGGLDGIVDIRQIWADL------LGVPVE-QVLAGDASSLNIMFDVISWSYIFGNNDS 124
Query: 190 ----LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP--PDFAIPIEELKSTISKNT 243
+ I P YD + + G ++ + + PD ++ ++ +
Sbjct: 125 VQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMNEDGPD----MDAVEELVKNPQ 180
Query: 244 RAILMNTP--HNPTGKMFTREELNVIASLC-IENDVLVFSDEVYDKLAFEMDH------I 294
+ P NPTG T + ++++ D V D Y + +
Sbjct: 181 VKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIV 240
Query: 295 SIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWA 354
+ G R S K G + + + + Q A
Sbjct: 241 GLGEAAGNPNRFWAFTSTSKITL-AGAGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLA 299
Query: 355 ATAALRAPETYYE---ELKRDYSAKKAILVEGLNAVGFKVFPSSGT---------YFVVV 402
E + + K ++E L+ G YF+ +
Sbjct: 300 HARYFGDAEGVRAVMRKHAASLAPKFNKVLEILD----SRLAEYGVAQWTVPAGGYFISL 355
Query: 403 DHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
D G + +A L KE G+ Y
Sbjct: 356 D-VVPGTASRVA---ELAKEAGIALTGAGSSY 383
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 5e-24
Identities = 54/389 (13%), Positives = 113/389 (29%), Gaps = 60/389 (15%)
Query: 88 AKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPN---FDGPDFVKDAAIQAI--RDGKN-- 140
A RL + + + + + L K+ +++L +G P+ D + + +DG +
Sbjct: 11 AARLAQVREEVTAKYAELKAKNLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCR 70
Query: 141 QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG----------- 189
Y G+ + A L + + V G + I ++
Sbjct: 71 NYGGLLGIADIRELWAEA------LGLPAD-LVVAQDGSSLNIMFDLISWSYTWGNNDSS 123
Query: 190 ---LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAI 246
+ + P YD + G ++ + + D + ++ +
Sbjct: 124 RPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMT--DEGPDMGVVRELVKDPQVKG 181
Query: 247 LMNTP--HNPTGKMFTREELNVIASLCIE-NDVLVFSDEVYDKLAFEMDHISIASLP--- 300
+ P NPTG F+ + +A + D + D Y + + ++
Sbjct: 182 MWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFA 241
Query: 301 ---GMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATA 357
G R M+S K G + + + + + Q A
Sbjct: 242 QAAGNPNRFWFMSSTSKITH-AGSGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQ 300
Query: 358 ALRAPETYYE---ELKRDYSAKKAILVEGLNAVGFKVFPSSGT---------YFVVVDHT 405
+ + K ++E L+ G YF+ VD
Sbjct: 301 FFGDVAGLKAHMLKHAASLAPKFERVLEILD----SRLSEYGVAKWTSPTGGYFISVD-V 355
Query: 406 PFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
G + + L KE G+ +
Sbjct: 356 VPGTASRVV---ELAKEAGIALTGAGSSF 381
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 54/384 (14%), Positives = 114/384 (29%), Gaps = 46/384 (11%)
Query: 88 AKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPN---FDGPDFVKDAAIQAI--RDGKN-- 140
+ + +N+ +G P FD + + DG +
Sbjct: 4 KEASRPALDLARQAYEAFKARGLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLR 63
Query: 141 QYARG-HGVPEFNSAIASRFKKD-------SGLEVDPEKEVTVTSGCTEAIAATILGLIN 192
Y G G+P + A + ++ + + +T + + ++
Sbjct: 64 NYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQ-GLVLTFALLHGVRGSTGPWLS 122
Query: 193 PGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNT-P 251
++I+ P YD + L G ++ + ++ ++ ++ + + P
Sbjct: 123 QTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQ--SDGPDVDAVERLAGTDPSVKGILFVP 180
Query: 252 --HNPTGKMFTREELNVIASL-CIENDVLVFSDEVYDKLAFE-------MDHISIASLPG 301
NP G+ + E+ +A L D +F+D+ Y ++ + +A G
Sbjct: 181 TYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAG 240
Query: 302 MYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRA 361
+R S K G +G+ + + + + + Q L
Sbjct: 241 YPDRAFVFASTSKITF-AGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTE 299
Query: 362 PETYYEE----LKRDYSAKKAILVEGLNAVGFKVFPSSGT-------YFVVVDHTPFGHE 410
E + K + E L A T YF+ +D T
Sbjct: 300 YPGGLEGLMRDHAAIIAPKFRAVDEVLRA-ELGEGGEYATWTLPKGGYFISLD-TAEPVA 357
Query: 411 TDIAFCEYLIKEVGVVAIPTSVFY 434
+ L + GV P Y
Sbjct: 358 DRVV---KLAEAAGVSLTPAGATY 378
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 5e-23
Identities = 51/242 (21%), Positives = 96/242 (39%), Gaps = 19/242 (7%)
Query: 167 VDPEKEVTVTSGCTEAIAATILGLINPG-DEVILFAPFYDSYEATLSMAGAKIKCITLRP 225
V PE +V V+ G E I I PG D ++ P Y Y + G + + +
Sbjct: 73 VKPE-QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLD 131
Query: 226 PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYD 285
++ + ++ + + + + + +P+NPTG++ ++ + L +V +DE Y
Sbjct: 132 -NWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELT-RGKAIVVADEAY- 187
Query: 286 KLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT---WGVRQAHSF 342
+ F S+A Y + +L K F+L G + G+ +A + V
Sbjct: 188 -IEF-CPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIA---- 241
Query: 343 LTFATSTPMQWAATAALRAPETYYEELKRDY-SAKKAILVEGLNAVGF--KVFPSSGTYF 399
+ STP+ A AL + A++ L+ L + +VF S Y
Sbjct: 242 -PYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYI 300
Query: 400 VV 401
+
Sbjct: 301 LA 302
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* Length = 390 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 3e-07
Identities = 34/177 (19%), Positives = 61/177 (34%), Gaps = 36/177 (20%)
Query: 117 GFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVT 176
+D + A + + G V ++ + A F V V+
Sbjct: 9 ASSTWDDLE--YKAIQSVLDSK--MFTMGEYVKQYETQFAKTFGSKYA--------VMVS 56
Query: 177 SG------CTEAIAATILGLINPGDEVILFAPFYDSYEATLS---MAGAKIKCITLRPPD 227
SG A+ T + GDE+I+ S+ T G ++K + +
Sbjct: 57 SGSTANLLMIAALFFTKKPRLKKGDEIIV-PAV--SWSTTYYPLQQYGLRVKFVDIDINT 113
Query: 228 FAIPIEELKSTISKNTRAILMNTPH---NPTGKMFTREELNVIASLCIENDVLVFSD 281
I IE LK ++ +T+AIL + NP + I + D+++ D
Sbjct: 114 LNIDIESLKEAVTDSTKAILT--VNLLGNPN-------NFDEINKIIGGRDIILLED 161
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 29/125 (23%), Positives = 43/125 (34%), Gaps = 19/125 (15%)
Query: 171 KEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYE-----ATLSMAGAKIKCITLRP 225
VT+G EA A + L V++ D AG I +
Sbjct: 70 DVARVTNGAREAKFAVMHSLAKKDAWVVM-----DENCHYSSYVAAERAGLNIALVPKTD 124
Query: 226 -PDFAIPIEELKSTISKNTRA-----ILMNTPHNPTGKMFTREELNVIASLCIENDVLVF 279
PD+AI E TI + + L+ P G ++ IA +C E DV +
Sbjct: 125 YPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYG---NLPDVKKIAKVCSEYDVPLL 181
Query: 280 SDEVY 284
+ Y
Sbjct: 182 VNGAY 186
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Length = 409 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 9e-06
Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 16/126 (12%)
Query: 173 VTVTSGCTEAIAATILGLINPGDEVI-LFAPFYDSYE----------ATLSMAGAKIKCI 221
+ SG T AI+ + G++ P DE++ + YD+ E +L +
Sbjct: 81 PQIISG-THAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSV 139
Query: 222 TLRPPDFAIPIEELKSTISKNTRAILMNTPH-NPTGKMFTREELNVIASLCIEN--DVLV 278
L + + + ++ T+ I + FT E++ + +V+V
Sbjct: 140 PLL-ENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIV 198
Query: 279 FSDEVY 284
F D Y
Sbjct: 199 FVDNCY 204
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} Length = 374 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 9e-06
Identities = 34/163 (20%), Positives = 66/163 (40%), Gaps = 37/163 (22%)
Query: 129 DAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188
+ + I+ + G + +F A+ + + V +G T+A+A +
Sbjct: 23 NDLREFIKTA--DFTLGAELEKFEKRFAAL--------HNAPHAIGVGTG-TDALAMSFK 71
Query: 189 GL-INPGDEVILFAPFYDSYEAT---LSMAGAKIKCITLRP------PDFAIPIEELKST 238
L I GDEVI ++ A+ + AGA P + I E++++
Sbjct: 72 MLNIGAGDEVIT-CAN--TFIASVGAIVQAGAT-------PVLVDSENGYVIDPEKIEAA 121
Query: 239 ISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSD 281
I+ T+AI+ P + TG + L IA ++++ + D
Sbjct: 122 ITDKTKAIM---PVHYTGNIADMPALAKIAK---KHNLHIVED 158
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* Length = 393 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 24/151 (15%)
Query: 102 MSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKK 161
M+ + + + P + A + G G E +A
Sbjct: 1 MAEGKMMSDFLPFSR--PAMGAEE--LAAVKTVLDSG--WITTGPKNQELEAAFCRL--- 51
Query: 162 DSGLEVDPEKEVTVTSGCTEA--IAATILGLINPGDEVILFAPFYDSYEATLSMA---GA 216
+ V V+S T IA LG I GDEVI ++ +TL+M GA
Sbjct: 52 -----TGNQYAVAVSSA-TAGMHIALMALG-IGEGDEVIT-PSM--TWVSTLNMIVLLGA 101
Query: 217 KIKCITLRPPDFAIPIEELKSTISKNTRAIL 247
+ + + E +++ I+ T+AI+
Sbjct: 102 NPVMVDVDRDTLMVTPEHIEAAITPQTKAII 132
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* Length = 367 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 17/123 (13%)
Query: 129 DAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188
DA IQ + QY G V E +A V + ++ +G T+A+ +
Sbjct: 19 DAGIQRVLR-HGQYILGPEVTELEDRLADF--------VGAKYCISCANG-TDALQIVQM 68
Query: 189 GL-INPGDEVILFAPFYDSYEAT---LSMAGAKIKCITLRPPDFAIPIEELKSTISKNTR 244
L + PGDEVI F +Y AT +++ GAK + + P + + + L++ I+ T+
Sbjct: 69 ALGVGPGDEVIT-PGF--TYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTK 125
Query: 245 AIL 247
AI+
Sbjct: 126 AII 128
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* Length = 389 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Query: 182 AIAATILGLINPGDEVILFAPFYDS----YEATLSMAGAKIKCITLRPPDFAIPIEELKS 237
AI+++ L + GD +I Y + L G I + D + E++K+
Sbjct: 86 AISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFG-----IEVDLIDTSDV-EKVKA 139
Query: 238 TISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSD 281
NT+ + + +P NPT K+ ++ IA +C E + D
Sbjct: 140 AWKPNTKMVYLESPANPTCKVS---DIKGIAVVCHERGARLVVD 180
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} Length = 373 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 31/157 (19%), Positives = 61/157 (38%), Gaps = 23/157 (14%)
Query: 129 DAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188
+ I +N + G +F A + + +G +A+ +
Sbjct: 20 KFKFEEIYK-RNWFILGDEDKKFEQEFADY--------CNVNYCIGCGNG-LDALHLILK 69
Query: 189 GL-INPGDEVILFAPFYDSYEAT---LSMAGAKIKCITLRPPDFAIPIEELKSTISKNTR 244
G I GDEVI+ ++ AT +S GAK + + I ++S I++ T+
Sbjct: 70 GYDIGFGDEVIV-PSN--TFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITEKTK 126
Query: 245 AILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSD 281
AI+ + G+ +E+ IA + ++ + D
Sbjct: 127 AII---AVHLYGQPADMDEIKRIAK---KYNLKLIED 157
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 44/195 (22%), Positives = 72/195 (36%), Gaps = 29/195 (14%)
Query: 112 INLGQG-FPNFDG----PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASR-FKKDSGL 165
+N G + +G VK+ + YA G+P+F A F
Sbjct: 41 VNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFR-- 98
Query: 166 EVDPEKEVTV--TSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITL 223
PE + T+G T I I PGDEV+ ++ +Y S G + +L
Sbjct: 99 ---PEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSL 155
Query: 224 RPP-------DFAIPIEELKSTISKNTRAILMNTP-HNPTGKMFTREELNVIASLCIE-- 273
F + EL + N ++ NTP +NPTG ++ + I + +
Sbjct: 156 FDEHNNFNHEAFQNRVNELAA-KQTNV-VVIFNTPGNNPTGYSIEDKDWDSILNFLKDLV 213
Query: 274 ----NDVLVFSDEVY 284
N+V++ D Y
Sbjct: 214 AIGRNNVIIGIDVAY 228
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Length = 398 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Query: 182 AIAATILGLINPGDEVILFAPFYDS----YEATLSMAGAKIKCITLRPPDFAIPIEELKS 237
AI +T+ L+ PGDEV+L Y + G + LR D A + L++
Sbjct: 92 AITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFG-----VKLRHVDMADL-QALEA 145
Query: 238 TISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSD 281
++ TR I +P NP M ++ +A + ++ V D
Sbjct: 146 AMTPATRVIYFESPANPNMHMA---DIAGVAKIARKHGATVVVD 186
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* Length = 399 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 29/160 (18%)
Query: 129 DAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188
DAAI + D +Y G + F + A+ + + V V SG +A+ +
Sbjct: 47 DAAIARVLD-SGRYLLGPELEGFEAEFAAY--------CETDHAVGVNSG-MDALQLALR 96
Query: 189 GL-INPGDEVILFAPFYDSYEAT---LSMAGAKIKCITLRPPDFAIPIEELKSTISKNTR 244
GL I PGDEVI+ +Y A+ +S GA + + ++ I+ TR
Sbjct: 97 GLGIGPGDEVIV-PSH--TYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTR 153
Query: 245 AILMNTPHNPT---GKMFTREELNVIASLCIENDVLVFSD 281
A+L P G + L +A + + + D
Sbjct: 154 ALL------PVHLYGHPADMDALRELAD---RHGLHIVED 184
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 182 AIAATILGLINPGDEVILFAPFYDSYEAT-------LSMAGAKIKCITLRPPDFAIPIEE 234
A+A +IL I GD V++ +YE + LS G +T D I +
Sbjct: 109 AVANSILAFIEQGDHVLMTN---TAYEPSQDFCSKILSKLG-----VTTSWFDPLIG-AD 159
Query: 235 LKSTISKNTRAILMNTPHNPTGKM 258
+ + NT+ + + +P + T ++
Sbjct: 160 IVKHLQPNTKIVFLESPGSITMEV 183
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 182 AIAATILGLINPGDEVILFAPFYDS----YEATLSMAGAKIKCITLRPPDFAIPIEELKS 237
AI T+L L GD ++ + Y ++ G I +R D A P EE+++
Sbjct: 91 AITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFG-----INVRFVDAAKP-EEIRA 144
Query: 238 TISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSD 281
+ T+ + + TP NPT + ++ +A + + L+ D
Sbjct: 145 AMRPETKVVYIETPANPTLSLV---DIETVAGIAHQQGALLVVD 185
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 6e-05
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 16/122 (13%)
Query: 177 SGCTEAIAATILGLINPGDEVI-LFAPFYDSYE----------ATLSMAGAKIKCITLRP 225
SG T AI+ + G++ PGDE++ + YD+ E + + L
Sbjct: 91 SG-THAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTE 149
Query: 226 PDFAIPIEELKSTISKNTRAILMNTPHN-PTGKMFTREELNVIASLC--IENDVLVFSDE 282
+ E + + I NT+ I + T FT ++ + + I+ DV+VF D
Sbjct: 150 GG-LVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDN 208
Query: 283 VY 284
Y
Sbjct: 209 CY 210
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 Length = 331 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 18/107 (16%)
Query: 182 AIAATILGLINPGDEVILFAPFYDSYEAT-------LSMAGAKIKCITLRPPDFAIPIEE 234
AIAA++ + GD +I Y T L G + + D A+P
Sbjct: 25 AIAASVWTFLKAGDHLISDD---CLYGCTHALFEHQLRKFG-----VEVDFIDMAVP-GN 75
Query: 235 LKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSD 281
++ + NTR + TP NPT K+ E+ + + D+LV D
Sbjct: 76 IEKHLKPNTRIVYFETPANPTLKVIDIED--AVKQARKQKDILVIVD 120
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* Length = 388 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 24/133 (18%), Positives = 54/133 (40%), Gaps = 18/133 (13%)
Query: 119 PNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSG 178
P +D + ++ ++A+ G+ G V F A+ + VT+G
Sbjct: 13 PQYDDAE--RNGLVRALEQGQWWRMGGDEVNSFEREFAAH--------HGAAHALAVTNG 62
Query: 179 CTEAIAATILGL-INPGDEVILFAPFYDSYEATLSM---AGAKIKCITLRPPDFAIPIEE 234
T A+ + + + PG EVI+ F ++ ++ GA + + + + E
Sbjct: 63 -THALELALQVMGVGPGTEVIV-PAF--TFISSSQAAQRLGAVTVPVDVDAATYNLDPEA 118
Query: 235 LKSTISKNTRAIL 247
+ + ++ T+ I+
Sbjct: 119 VAAAVTPRTKVIM 131
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 182 AIAATILGLINPGDEVILFAPFYDS----YEATLSMAGAKIKCITLRPPDFAIPIEELKS 237
A+ ++ L+ GD ++ + S L G + D + +
Sbjct: 108 AVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWG-----VQTVFVDGDDL-SQWER 161
Query: 238 TISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSD 281
+S T+A+ TP NP + ++ + L V D
Sbjct: 162 ALSVPTQAVFFETPSNPMQSLV---DIAAVTELAHAAGAKVVLD 202
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Length = 445 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 14/105 (13%)
Query: 182 AIAATILGLINPGDEVILFAPFYDS----YEATLSMAGAKIKCITLRPPDFAIPIEELKS 237
A +L L+ G ++ Y E L G IT D A L+
Sbjct: 141 ASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMG-----ITATVIDPADV-GALEL 194
Query: 238 TISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSD 281
+++ +P NP + ++ +++ LC E LV D
Sbjct: 195 ALNQKKVNLFFTESPTNPFLRCV---DIELVSKLCHEKGALVCID 236
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Length = 404 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 182 AIAATILGLINPGDEVILFAPFYDS----YEATLSMAGAKIKCITLRPPDFAIPIEELKS 237
AIAAT+L ++ GD +I Y +E L+ G I + + AIP E+K
Sbjct: 89 AIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFG-----IQVDFINTAIP-GEVKK 142
Query: 238 TISKNTRAILMNTPHNPTGK 257
+ NT+ + TP NPT K
Sbjct: 143 HMKPNTKIVYFETPANPTLK 162
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 19/126 (15%)
Query: 173 VTVTSGCTEAIAATILGLINPGDEVILFA-PFYDSYE-----------ATLSMAGAKIKC 220
+G T A+ A + G + PG+ ++ YD+ +L G K
Sbjct: 95 PHFVNG-THALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQ 153
Query: 221 ITLRPPDFAIPIEELKSTISKNTRAILMNTPHNP---TGKMFTREELNVIASLC--IEND 275
+ L+ D +EE++ + ++ L++ + + E++ I I D
Sbjct: 154 VDLK-EDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKD 212
Query: 276 VLVFSD 281
++ F D
Sbjct: 213 IICFVD 218
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 15/87 (17%)
Query: 169 PEKEVTVTSGCTEAI---AATILGLINPGDEVIL--------FAPFYDSYEATLSMAGAK 217
V + + + A G EVI+ AP+ + GAK
Sbjct: 85 DPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRY----GAK 140
Query: 218 IKCITLRPPDFAIPIEELKSTISKNTR 244
+K + +P + +S ISK+TR
Sbjct: 141 VKWAEVDIETGELPTWQWESLISKSTR 167
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} PDB: 3qi6_A* Length = 392 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 19/107 (17%)
Query: 182 AIAATILGLINPGDEVILFAPFYDSYEAT--LSMAGAKIKCITLRPPDFAIPIEELKSTI 239
A + ++ PGD V++ D+Y T L + P A + +++ I
Sbjct: 93 AADCALRAMLRPGDHVVIPD---DAYGGTFRLIDKVFTGWNVEYTPVALADL-DAVRAAI 148
Query: 240 SKNTRAILMNTPHNPTGKMFTREELNV-----IASLCIENDVLVFSD 281
TR I + TP NP L++ IA L ++ V D
Sbjct: 149 RPTTRLIWVETPTNPL--------LSIADIAGIAQLGADSSAKVLVD 187
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* Length = 391 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 43/174 (24%)
Query: 88 AKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYA-RGH 146
++ Q M + I++ P DG + +D ++ + + G
Sbjct: 5 HHHHHHSSENLYFQGHMSDLPR--ISVAA--PRLDGNE--RDYVLECMDTT--WISSVGR 56
Query: 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA--IAATILGLINPGDEVILFAPFY 204
+ EF A A + +G T A +A +G I PGDEVI+
Sbjct: 57 FIVEFEKAFADYCGVKHA--------IACNNG-TTALHLALVAMG-IGPGDEVIV-PSL- 104
Query: 205 DSYEAT---LSMAGAKIKCITLRPPDFA--------IPIEELKSTISKNTRAIL 247
+Y A+ ++ GA P + +L++ I+ T+AI+
Sbjct: 105 -TYIASANSVTYCGAT--------PVLVDNDPRTFNLDAAKLEALITPRTKAIM 149
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* Length = 375 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 7e-04
Identities = 30/143 (20%), Positives = 46/143 (32%), Gaps = 39/143 (27%)
Query: 119 PNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSG 178
P D D K A ++ + Q +G F A+ + + + S
Sbjct: 9 PCLDKED--KKAVLEVLNSK--QLTQGKRSLLFEEALCEF--------LGVKHALVFNSA 56
Query: 179 CTEA--IAATILGLINPGD--EVILFAPFYDSYEATLSMA---GAKIKCITLRPPDFA-- 229
T A D E+I P S+ AT +M G P FA
Sbjct: 57 -TSALLTLYRNFS-EFSADRNEIIT-TPI--SFVATANMLLESGYT--------PVFAGI 103
Query: 230 -----IPIEELKSTISKNTRAIL 247
I L+ I++ T+AI+
Sbjct: 104 KNDGNIDELALEKLINERTKAIV 126
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 434 | |||
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 100.0 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.98 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.98 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.98 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.98 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.97 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.97 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.97 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.97 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.97 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.97 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.97 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.97 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.97 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.97 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.97 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.97 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.97 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.97 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.97 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.97 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.97 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.97 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.97 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.97 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.97 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.97 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.97 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.97 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.97 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.97 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.97 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.96 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.96 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.96 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.96 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.96 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.96 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.96 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.96 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.96 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.96 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.96 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.96 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.96 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.96 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.96 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.96 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.96 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.96 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.96 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.96 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.96 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.96 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.96 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.96 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.95 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.95 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.95 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.95 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.95 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.95 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.95 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.95 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.95 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.95 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.95 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.95 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.95 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.95 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.95 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.95 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.95 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.95 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.95 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.94 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.94 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.94 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.94 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.94 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.94 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.94 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.94 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.94 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.94 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.94 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.94 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.94 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.94 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.94 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.94 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.94 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.94 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.94 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.93 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.93 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.93 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.93 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.93 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.93 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.93 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.93 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.93 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.92 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.92 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.92 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.92 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.92 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.92 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.92 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.92 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.92 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.91 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.91 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.9 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.9 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.9 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.9 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.84 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.9 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.9 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.89 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.89 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.89 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.89 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.89 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.88 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.88 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.88 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.86 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.85 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.84 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.84 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.84 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.84 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.81 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.76 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.75 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.66 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.66 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.63 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.63 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.62 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.61 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.53 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.46 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.45 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 84.63 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 80.78 |
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=394.36 Aligned_cols=322 Identities=34% Similarity=0.654 Sum_probs=289.5
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+++.|+|+.|.|++++++.+.+++.+.+.+....|++..|..+||+++++++.+.+|..++++ +|++|+|+++++.+++
T Consensus 30 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~g~~~al~~~~ 108 (385)
T 1b5p_A 30 GVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPE-ETIVTVGGSQALFNLF 108 (385)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGG-GEEEESHHHHHHHHHH
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChH-HEEEcCChHHHHHHHH
Confidence 357899999999988889999999888877667899988999999999999999899888888 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
.+++++||+|++++|+|..+...++..|++++.+++++ +++.+|++.+++++++++++|++++||||||.+++.+++++
T Consensus 109 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~l~~ 188 (385)
T 1b5p_A 109 QAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEA 188 (385)
T ss_dssp HHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCCCCCCCCcCHHHHHH
Confidence 99999999999999999999999999999999999985 46889999999999888999999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccC
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA 346 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~ 346 (434)
|+++|++||++||+||+|.++.+++...++..+.. ++++++.||||.+|++|+|+||+++++++++.++..+...+++
T Consensus 189 i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~--~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~l~~~~~~~~~~ 266 (385)
T 1b5p_A 189 LARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAP--EHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTS 266 (385)
T ss_dssp HHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCT--TTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCC--CCEEEEEechhhcCCcccceEEEEeCHHHHHHHHHHHhhccCC
Confidence 99999999999999999999988764345555533 7899999999999999999999999999999998887777788
Q ss_pred CchHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhc
Q 013883 347 TSTPMQWAATAALRA---PETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEV 423 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~ 423 (434)
++.+.|.++..+|+. ..+++++++++++++++.+.+.|+++|+.+.++++++|+|+++...+. +..+++++|+ ++
T Consensus 267 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~-~~ 344 (385)
T 1b5p_A 267 PDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAP-DEVRAAERLL-EA 344 (385)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBTTEEEEECTTTCS-SHHHHHHHHH-HT
T ss_pred CCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEecCCCCC-CHHHHHHHHH-HC
Confidence 999999999999986 567888999999999999999999889998899999999998753333 5778999887 66
Q ss_pred CeEEECCCCCC
Q 013883 424 GVVAIPTSVFY 434 (434)
Q Consensus 424 GV~v~pG~~F~ 434 (434)
||.+.||+.|+
T Consensus 345 gv~v~~g~~f~ 355 (385)
T 1b5p_A 345 GVAVVPGTDFA 355 (385)
T ss_dssp TEECEESGGGT
T ss_pred CeEEecccccC
Confidence 99999998773
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=402.53 Aligned_cols=327 Identities=36% Similarity=0.701 Sum_probs=291.3
Q ss_pred hcCCeeEeCCCCCCCCCcHHHHHHHHHHHHc-CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 107 IKHGAINLGQGFPNFDGPDFVKDAAIQAIRD-GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 107 ~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
.+++.|||+.|.|++++++.+.+++.+++.+ ....|++..|..+||+++++++.+.+|..++++ +|++|+|+++++.+
T Consensus 55 ~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~v~~t~G~~~al~~ 133 (447)
T 3b46_A 55 QGRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAE-NVTVTTGANEGILS 133 (447)
T ss_dssp TTSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGG-GEEEESHHHHHHHH
T ss_pred cCCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChh-hEEEeCCHHHHHHH
Confidence 3457899999999999999999999998876 456899999999999999999998889888888 89999999999999
Q ss_pred HHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC-----------CCCCCHHHHHhhcccCCcEEEecCCCCC
Q 013883 186 TILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-----------DFAIPIEELKSTISKNTRAILMNTPHNP 254 (434)
Q Consensus 186 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-----------~~~~d~~~l~~~i~~~~~~i~~~~p~NP 254 (434)
++.+++++||+|++++|+|+.+...++..|++++.+|++++ ++.+|++.|++++++++++|++++||||
T Consensus 134 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~np 213 (447)
T 3b46_A 134 CLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNP 213 (447)
T ss_dssp HHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEEEESSCTT
T ss_pred HHHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEEEeCCCCC
Confidence 99999999999999999999999999999999999998754 5789999999999888999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCC-CCCCCceEEEccCChhhccccceeeeEEe-Chhh
Q 013883 255 TGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAIA-PPHL 332 (434)
Q Consensus 255 TG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~-~~~~~~~i~i~S~SK~~g~~G~R~G~~~~-~~~~ 332 (434)
||.+++.+++++|+++|++||++||+||+|.++.+++...++..+ .+..++++++.|+||.+|++|+|+||+++ ++++
T Consensus 214 tG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~~l 293 (447)
T 3b46_A 214 IGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAEL 293 (447)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCHHH
Confidence 999999999999999999999999999999999987744455554 22357899999999999999999999999 9999
Q ss_pred HHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCC--
Q 013883 333 TWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFG-- 408 (434)
Q Consensus 333 ~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-- 408 (434)
++.+.......+++.+.+.|.++..+|+.. ++++++++++++++++.+.+.|+++|+.+..+++++|+|+++....
T Consensus 294 ~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~p 373 (447)
T 3b46_A 294 LSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKIP 373 (447)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTCCEECCSBSSEEEEECTTCCCC
T ss_pred HHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEecccccCc
Confidence 999888777678899999999999999875 5678899999999999999999998999988999999999886421
Q ss_pred -----------CCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 409 -----------HETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 409 -----------~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
..++.+++++|++++||.+.||+.||
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~ 410 (447)
T 3b46_A 374 EDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFY 410 (447)
T ss_dssp TTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGS
T ss_pred cccccccccccCCCHHHHHHHHHHhCCEEEECchHhC
Confidence 12466899889877899999998774
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-49 Score=393.77 Aligned_cols=335 Identities=15% Similarity=0.119 Sum_probs=269.5
Q ss_pred hhhhccCCchHHHHHhhhccccHHHHHHHHhhcCCeeEeCCCC-CC----CCCcHHHHHHHHHHH-H-cCCCCCCCCCCc
Q 013883 76 TIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGF-PN----FDGPDFVKDAAIQAI-R-DGKNQYARGHGV 148 (434)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~-p~----~~~~~~v~~~~~~~~-~-~~~~~Y~~~~G~ 148 (434)
+...+....+.+.+++++.+. +++|||++|. |+ +++++.+.++.. .+ . ...++|.+..|.
T Consensus 8 ~~~~~~~~i~~~~~~~~~~~~------------~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~ 74 (405)
T 3k7y_A 8 LENIEVDNILKTAREFKEDTC------------EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGT 74 (405)
T ss_dssp CCCCCCCHHHHHHHHHTTSSC------------SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSC
T ss_pred CCCCCCChHHHHHHHHhcCCC------------cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCc
Confidence 333344455677777765443 3889999995 23 335678888776 43 3 346789999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCC-cEEEcCChHHHHHHHHHHccC--CCCeEEEcCCCchhHHHHHHHcCCEEEEEEcC-
Q 013883 149 PEFNSAIASRFKKDSGLEVDPEK-EVTVTSGCTEAIAATILGLIN--PGDEVILFAPFYDSYEATLSMAGAKIKCITLR- 224 (434)
Q Consensus 149 ~~lr~~ia~~l~~~~g~~~~~~~-~i~~t~G~~~ai~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~- 224 (434)
++||+++++++.+.++..+++++ +|++|+|+++++.+++..+++ | |+|++++|+|.+|..+++..|++++.+|+.
T Consensus 75 ~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~ 153 (405)
T 3k7y_A 75 EDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFD 153 (405)
T ss_dssp HHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEE
T ss_pred HHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccc
Confidence 99999999999877777677763 359999999999999999987 9 999999999999999999999999999984
Q ss_pred CCCCCCCHHHHHhhccc--CCcEEEecCC-CCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC---CccccC
Q 013883 225 PPDFAIPIEELKSTISK--NTRAILMNTP-HNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD---HISIAS 298 (434)
Q Consensus 225 ~~~~~~d~~~l~~~i~~--~~~~i~~~~p-~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~---~~~~~~ 298 (434)
++++++|++.+++++++ +++++++++| |||||.+++.+++++|+++|++||++||+||+|.+|.+++. ..++..
T Consensus 154 ~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~ 233 (405)
T 3k7y_A 154 YNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRK 233 (405)
T ss_dssp TTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHH
T ss_pred cccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHH
Confidence 44689999999999874 5678888765 99999999999999999999999999999999999988642 123333
Q ss_pred CCCCCCceEEEccCChhhccccceeeeEEe---ChhhHHHH----HHHhhccccCCchHHHHHHHHHHhCC------hHH
Q 013883 299 LPGMYERTVTMNSLGKTFSLTGWKIGWAIA---PPHLTWGV----RQAHSFLTFATSTPMQWAATAALRAP------ETY 365 (434)
Q Consensus 299 ~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~---~~~~~~~l----~~~~~~~~~~~~~~~q~a~~~~L~~~------~~~ 365 (434)
+....+++++++||||.|+++|+|+||+++ ++++++.+ ....+....+++.++|.++..+|++. .++
T Consensus 234 ~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~ 313 (405)
T 3k7y_A 234 FEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKE 313 (405)
T ss_dssp HHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHhcCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHH
Confidence 333457999999999999999999999864 56555443 44444455667889999999999874 234
Q ss_pred HHHHHHHHHHHHHHHHHHhh----hCC----CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 366 YEELKRDYSAKKAILVEGLN----AVG----FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~L~----~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
+++++++|+++|+.+.+.|+ ++| |.+.+++||||+|++++. +++++| +++||+++||..
T Consensus 314 l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-------~~~~~L-~~~gV~v~p~~R 380 (405)
T 3k7y_A 314 LSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-------KIAEHL-KTHHIYIINNGR 380 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-------GGTTTT-TTTTEECCTTSE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH-------HHHHHH-HHCCEeecCCCe
Confidence 66778889999999999999 776 788899999999998732 566777 888999999864
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=390.38 Aligned_cols=342 Identities=39% Similarity=0.715 Sum_probs=300.4
Q ss_pred hhccccHHHHHHHHhhcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCC--CCCCCCCCcHHHHHHHHHHHHhhcCCCCCC
Q 013883 92 EKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGK--NQYARGHGVPEFNSAIASRFKKDSGLEVDP 169 (434)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~--~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~ 169 (434)
++.+.+.+.++.+...+++.|+|+.|.|++++++.+.+++.+++.++. ..|++..|..++|+++++++++.+|.++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~ 90 (422)
T 3fvs_A 11 DGIDYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDP 90 (422)
T ss_dssp TTCCCCHHHHHHHHHHTSCCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCH
T ss_pred hccCccHHHHHHHHhhcCCceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCC
Confidence 344444555555556667899999999999999999999999988753 689998899999999999999999998888
Q ss_pred -CCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-----------CCCCCCHHHHHh
Q 013883 170 -EKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-----------PDFAIPIEELKS 237 (434)
Q Consensus 170 -~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-----------~~~~~d~~~l~~ 237 (434)
+ +|++|+|+++++..++..++++||+|+++.|+|.++...+...|.+++.+++++ .++.+|++.+++
T Consensus 91 ~~-~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~ 169 (422)
T 3fvs_A 91 LR-NVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAG 169 (422)
T ss_dssp HH-HEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHT
T ss_pred CC-cEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHh
Confidence 6 899999999999999999999999999999999999999999999999999875 245689999999
Q ss_pred hcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhh
Q 013883 238 TISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTF 316 (434)
Q Consensus 238 ~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~ 316 (434)
++++++++|++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+....++++++.|+||.+
T Consensus 170 ~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~ 249 (422)
T 3fvs_A 170 KFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTF 249 (422)
T ss_dssp TCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHH
T ss_pred hcCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhcc
Confidence 9998999999999999999999999999999999999999999999999998764 445666655568899999999999
Q ss_pred ccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhC-------ChHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 013883 317 SLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRA-------PETYYEELKRDYSAKKAILVEGLNAVGF 389 (434)
Q Consensus 317 g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~-------~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 389 (434)
|++|+|+||+++++++++.+........++.+.+.|.++..+|++ .++++++++++++++++.+.+.|++.|+
T Consensus 250 g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 329 (422)
T 3fvs_A 250 SATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGL 329 (422)
T ss_dssp TCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCccceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999998888777889999999999999974 3568899999999999999999999999
Q ss_pred EeecCCeeEEEeeecCCCC--CCC---------HHHHHHHHHHhcCeEEECCCCCC
Q 013883 390 KVFPSSGTYFVVVDHTPFG--HET---------DIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
.+..+++++|+|+++...+ ..+ +.+++.+|++++||.+.||+.|+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~ 385 (422)
T 3fvs_A 330 KPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFY 385 (422)
T ss_dssp EEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGS
T ss_pred eecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhc
Confidence 9999999999999874311 101 55888888888899999998874
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-48 Score=386.43 Aligned_cols=340 Identities=41% Similarity=0.743 Sum_probs=297.7
Q ss_pred ccccHHHHHHHHhhcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCC-CC
Q 013883 94 FKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDP-EK 171 (434)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~ 171 (434)
.+...+..+.+...++++|+|+.|.|++++++.+.+++.+++.+. ...|++..|..++|+++++++++.+|.++++ +
T Consensus 8 ~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~- 86 (410)
T 3e2y_A 8 LDSNVWVEFTKLAADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNE- 86 (410)
T ss_dssp CCCCHHHHTTTTTTSTTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTT-
T ss_pred CCccHHHHHHHHhcCCCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCC-
Confidence 333444444444555689999999999999999999999988764 4589998899999999999999999998888 6
Q ss_pred cEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC----------CCCCCCHHHHHhhccc
Q 013883 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP----------PDFAIPIEELKSTISK 241 (434)
Q Consensus 172 ~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~----------~~~~~d~~~l~~~i~~ 241 (434)
+|++++|+++++..++..++++||+|+++.|+|..+...+...|.+++.+++++ .++.+|++.+++++++
T Consensus 87 ~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~ 166 (410)
T 3e2y_A 87 EILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS 166 (410)
T ss_dssp SEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT
T ss_pred CEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCC
Confidence 899999999999999999999999999999999999999999999999999863 3466899999999998
Q ss_pred CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhcccc
Q 013883 242 NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTG 320 (434)
Q Consensus 242 ~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G 320 (434)
++++|++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+....++++++.||||.+|++|
T Consensus 167 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G 246 (410)
T 3e2y_A 167 KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTG 246 (410)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGG
T ss_pred CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCC
Confidence 999999999999999999999999999999999999999999999998764 3456666655688999999999999999
Q ss_pred ceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhC-------ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeec
Q 013883 321 WKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRA-------PETYYEELKRDYSAKKAILVEGLNAVGFKVFP 393 (434)
Q Consensus 321 ~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~-------~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 393 (434)
+|+||+++++++++.++......+++.+.+.|.++..+|++ .++++++++++++++++.+.+.|+++|+.+..
T Consensus 247 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 326 (410)
T 3e2y_A 247 WKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIV 326 (410)
T ss_dssp GCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEB
T ss_pred ceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCeecC
Confidence 99999999999999998888777889999999999999973 35688999999999999999999999999999
Q ss_pred CCeeEEEeeecCCCCC--C-------CHHHHHHHHHHhcCeEEECCCCCC
Q 013883 394 SSGTYFVVVDHTPFGH--E-------TDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 394 ~~~~~~~~~~~~~~~~--~-------~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+++++|+|+++..... . ++.+++.++++++||.+.||+.|+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~ 376 (410)
T 3e2y_A 327 PDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFC 376 (410)
T ss_dssp CSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGS
T ss_pred CCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhC
Confidence 9999999998754321 1 134888888888899999998874
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=378.83 Aligned_cols=327 Identities=39% Similarity=0.738 Sum_probs=288.3
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
..+.|+|+.|.+++++++.+.+++.+++.+....|.+..|..+||+++++++.+.+|.+++++.+|++|+|+++++.+++
T Consensus 29 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~ 108 (386)
T 1u08_A 29 QHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAI 108 (386)
T ss_dssp HTTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHH
T ss_pred cCCeEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHH
Confidence 34789999999988888999999999887756789988899999999999999888877766526999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
.+++++||+|++++|+|+++...++..|++++.+|++++++.+|++.+++++++++++|++++||||||.+++.+++++|
T Consensus 109 ~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i 188 (386)
T 1u08_A 109 TALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAAL 188 (386)
T ss_dssp HHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred HHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHHHHHH
Confidence 99999999999999999999999999999999999986568899999999998889999999999999999999999999
Q ss_pred HHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccC
Q 013883 268 ASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA 346 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~ 346 (434)
+++|++||+++|+||+|.++.+++. ..++..+....++++++.|+||.+|++|+|+||+++++++++.++......+++
T Consensus 189 ~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~ 268 (386)
T 1u08_A 189 WQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFS 268 (386)
T ss_dssp HHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCHHHHHHHHHHHHhhccC
Confidence 9999999999999999999988653 334444422356899999999999999999999999999999888877666788
Q ss_pred CchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 347 TSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
.+.+.|.++..+|+..++++++++++++++++.+.+.|++.|+.+.++++++|+|+++...+..+..+++++|++++||.
T Consensus 269 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 348 (386)
T 1u08_A 269 VNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVA 348 (386)
T ss_dssp CCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEE
T ss_pred CChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCceEEEEEecCCCCCCCHHHHHHHHHHhCCEE
Confidence 89999999999998767789999999999999999999999999988889999999875432125778988888778999
Q ss_pred EECCCCCC
Q 013883 427 AIPTSVFY 434 (434)
Q Consensus 427 v~pG~~F~ 434 (434)
+.||+.|+
T Consensus 349 v~~g~~f~ 356 (386)
T 1u08_A 349 AIPLSVFC 356 (386)
T ss_dssp CEEGGGGC
T ss_pred EeCchHhC
Confidence 99998763
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-47 Score=375.31 Aligned_cols=343 Identities=32% Similarity=0.602 Sum_probs=297.1
Q ss_pred HHhhhccccHHHHHHHHhhc-CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCC
Q 013883 89 KRLEKFKTTIFTQMSMLAIK-HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEV 167 (434)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~-~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~ 167 (434)
.++...+......+.+.... ++.|+|+.|.+++++++.+.+++.+++.+....|++..|..+||+++++++.+.+|..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~ 84 (389)
T 1gd9_A 5 DRLELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEA 84 (389)
T ss_dssp HHHHHSCCCHHHHHHHHHHTCSSCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCC
T ss_pred hHhHhCChhHHHHHHHHHhhhcCeEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444333 47899999999888889999999998877667899888999999999999998888877
Q ss_pred CCCCc-EEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcE
Q 013883 168 DPEKE-VTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRA 245 (434)
Q Consensus 168 ~~~~~-i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~ 245 (434)
+++ + |++|+|+++++..++.+++++||+|++++|+|+++...++..|++++.+|+++ .++.+|++.+++++++++++
T Consensus 85 ~~~-~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 163 (389)
T 1gd9_A 85 DPK-TEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRA 163 (389)
T ss_dssp CTT-TSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEE
T ss_pred CCC-CeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCceE
Confidence 887 8 99999999999999999999999999999999999999999999999999875 35789999999999888999
Q ss_pred EEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceee
Q 013883 246 ILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIG 324 (434)
Q Consensus 246 i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G 324 (434)
|++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+.+..++++++.|+||.+|++|+|+|
T Consensus 164 v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 243 (389)
T 1gd9_A 164 LIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLG 243 (389)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCE
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceE
Confidence 99999999999999999999999999999999999999999988765 44555554435789999999999999999999
Q ss_pred eEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEee
Q 013883 325 WAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPET--YYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVV 402 (434)
Q Consensus 325 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 402 (434)
|+++++++++.++.......++.+.+.|.++..+|+...+ ++++++++++++++.+.+.|++.|+++.++++++++|+
T Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 323 (389)
T 1gd9_A 244 FVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFP 323 (389)
T ss_dssp EEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTEECC
T ss_pred EEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCeeeEEEE
Confidence 9999999999998877777788999999999999987555 78899999999999999999999999888899999998
Q ss_pred ecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 403 DHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 403 ~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
++...+. +..+++++|++++||.+.||..|
T Consensus 324 ~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~~ 353 (389)
T 1gd9_A 324 RIRDTGL-TSKKFSELMLKEARVAVVPGSAF 353 (389)
T ss_dssp BCGGGTC-CHHHHHHHHHHHTCEECEEGGGG
T ss_pred eccCCCC-CHHHHHHHHHHhCCEEEeCchhh
Confidence 8753233 57789999886779999999766
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-47 Score=374.79 Aligned_cols=318 Identities=23% Similarity=0.411 Sum_probs=277.8
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+++.|||+.|.++++.++.+.+++.+++.+....|.+..|..+||+++++++++.+|..++++ +|++|+|+++++.+++
T Consensus 30 g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~v~~t~g~~~al~~~~ 108 (391)
T 3h14_A 30 GRRIIHMEVGQPGTGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPG-RVVITPGSSGGFLLAF 108 (391)
T ss_dssp TCCCEECCCSSCSSCSCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGG-GEEEESSHHHHHHHHH
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHH-HEEEecChHHHHHHHH
Confidence 347899999999999999999999998877667899998999999999999999999888888 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC-CCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
.+++++||+|++++|+|.++...++..|++++.++++++ ++.+|++.++++ ++++|++++||||||.+++.+++++
T Consensus 109 ~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~~p~nptG~~~~~~~l~~ 185 (391)
T 3h14_A 109 TALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASPANPTGTMLDHAAMGA 185 (391)
T ss_dssp HHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc---CCeEEEECCCCCCCCccCCHHHHHH
Confidence 999999999999999999999999999999999999853 478899999887 7899999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccC
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA 346 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~ 346 (434)
|+++|++||+++|+||+|.++.+++.......+ .+++++++|+||.+|++|+|+||+++++++++.++......+++
T Consensus 186 l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~---~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~ 262 (391)
T 3h14_A 186 LIEAAQAQGASFISDEIYHGIEYEAKAVTALEL---TDECYVINSFSKYFSMTGWRVGWMVVPEDQVRVVERIAQNMFIC 262 (391)
T ss_dssp HHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT---CSSSEEEEESSSTTCCTTSCCEEEECCGGGHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCEEEEECcchhcccCCCCcChhhc---CCCEEEEEechhccCCccceeEEEEeCHHHHHHHHHHHhhhccC
Confidence 999999999999999999999988754444433 57889999999999999999999999999999999888878889
Q ss_pred CchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEe-ecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCe
Q 013883 347 TSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKV-FPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGV 425 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV 425 (434)
.+.+.|.++.++|+ ..+++++.+++++++++.+.+.|++.|+.. .++++++++|+++...+. +..+++++|++++||
T Consensus 263 ~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~gi 340 (391)
T 3h14_A 263 APHASQVAALAALD-CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSDLTD-DSRAFAAEILEKAGV 340 (391)
T ss_dssp CCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTEEEEECTTTCS-CHHHHHHHHHHHHCE
T ss_pred CCHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeEEEEEecCccCC-CHHHHHHHHHHHCCE
Confidence 99999999989998 577899999999999999999999887664 578889999998754333 578899999888899
Q ss_pred EEECCCCCC
Q 013883 426 VAIPTSVFY 434 (434)
Q Consensus 426 ~v~pG~~F~ 434 (434)
.+.||+.|+
T Consensus 341 ~v~~g~~~~ 349 (391)
T 3h14_A 341 AVTPGLDFD 349 (391)
T ss_dssp ECEEGGGTC
T ss_pred EEcCchhhC
Confidence 999998774
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-47 Score=379.20 Aligned_cols=341 Identities=44% Similarity=0.782 Sum_probs=295.5
Q ss_pred hccccHHHHHHHHhhcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCc
Q 013883 93 KFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKE 172 (434)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~ 172 (434)
..+...+..+.+.....+.|||+.|.+++++++.+.+++.+++.+....|.+..|..+||+++++++.+.+|.+++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~ 88 (411)
T 2o0r_A 9 PYATTVFAEMSALATRIGAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETE 88 (411)
T ss_dssp GGSSCHHHHHHHHHHTTTCEESSCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTS
T ss_pred hcCccHHHHHHHHhhcCCeeeccCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCce
Confidence 33444455555555556889999999988888999999999987756789998899999999999999888877776436
Q ss_pred EEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC--CCCCCHHHHHhhcccCCcEEEecC
Q 013883 173 VTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP--DFAIPIEELKSTISKNTRAILMNT 250 (434)
Q Consensus 173 i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~--~~~~d~~~l~~~i~~~~~~i~~~~ 250 (434)
|++|+|+++++.+++.+++++||+|++++|+|+++...+...|++++.+|++++ ++.+|++.+++++++++++|++++
T Consensus 89 v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~ 168 (411)
T 2o0r_A 89 VLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINS 168 (411)
T ss_dssp EEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEES
T ss_pred EEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeC
Confidence 999999999999999999999999999999999999999999999999998753 467999999999988899999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeC
Q 013883 251 PHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP 329 (434)
Q Consensus 251 p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~ 329 (434)
|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+....++++++.|+||.+|++|+|+||++++
T Consensus 169 ~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 248 (411)
T 2o0r_A 169 PHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGP 248 (411)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeC
Confidence 999999999999999999999999999999999999988653 3455555444578999999999999999999999999
Q ss_pred hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCC
Q 013883 330 PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGH 409 (434)
Q Consensus 330 ~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (434)
+++++.+.......+++.+.+.|.++..+|+..++++++++++++++++.+.+.|++.|+.+.++++++|+|+++...+.
T Consensus 249 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~ 328 (411)
T 2o0r_A 249 AELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFLCADPRPLGY 328 (411)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCBSSEEEEECGGGTC
T ss_pred HHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCCEecCCCeeEEEEEecCCCCC
Confidence 99999888877666788888999999999986677899999999999999999999889999888999999998854321
Q ss_pred CCHHHHHHHHHHhcCeEEECCCCC
Q 013883 410 ETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 410 ~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
.+..+++++|++++||.+.||+.|
T Consensus 329 ~~~~~~~~~l~~~~gi~v~~g~~f 352 (411)
T 2o0r_A 329 DDSTEFCAALPEKVGVAAIPMSAF 352 (411)
T ss_dssp CCHHHHHHHHHHHHSEECEEGGGG
T ss_pred CCHHHHHHHHHHhCCEEEcChhhh
Confidence 257789998887779999999876
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=376.10 Aligned_cols=324 Identities=24% Similarity=0.452 Sum_probs=279.9
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCC-CCcEEEcCChHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDP-EKEVTVTSGCTEAIAA 185 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~~i~~t~G~~~ai~~ 185 (434)
+.+.|||+.|.+++++++.+.+++.+++.+. .+.|++..|..+||+++++++.+.+|.++++ + +|++|+|+++++.+
T Consensus 36 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~-~v~~t~g~~~a~~~ 114 (412)
T 2x5d_A 36 GEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPES-EAIVTIGSKEGLAH 114 (412)
T ss_dssp TCCCEECSSCCCCSCCCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTT-SEEEESCHHHHHHH
T ss_pred CCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCc-CEEEcCChHHHHHH
Confidence 4578999999998888899999998887654 4679888899999999999999888887777 6 89999999999999
Q ss_pred HHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC-CCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHH
Q 013883 186 TILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL 264 (434)
Q Consensus 186 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l 264 (434)
++.+++++||+|++++|+|+++...++..|++++.+|++++ ++.+|++.+++++++++++|++++||||||.+++.+++
T Consensus 115 ~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~~~~~~l 194 (412)
T 2x5d_A 115 LMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELDFF 194 (412)
T ss_dssp HHHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTCCCCCHHHH
T ss_pred HHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECCCCCCCCCcCCHHHH
Confidence 99999999999999999999999999999999999998864 44578999999998889999999999999999999999
Q ss_pred HHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcc
Q 013883 265 NVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL 343 (434)
Q Consensus 265 ~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~ 343 (434)
++|+++|++||+++|+||+|.++.+++. ..++..+....++++++.|+||.+|++|+|+||+++++++++.+.......
T Consensus 195 ~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 274 (412)
T 2x5d_A 195 ERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYH 274 (412)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcCHHHHHHHHHHHhhh
Confidence 9999999999999999999999988653 445555543357899999999999999999999999999999998877766
Q ss_pred ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCC--CCHHHHHHHHHH
Q 013883 344 TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGH--ETDIAFCEYLIK 421 (434)
Q Consensus 344 ~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Ll~ 421 (434)
+++.+.+.|.++..+|+..++++++++++++++++.+.+.|++.|+.+.++++++|+|++++. +. .+..+++++|++
T Consensus 275 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~l~~ 353 (412)
T 2x5d_A 275 DYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREAGWMVENPKASMYVWAKIPE-PYAHLGSLEFAKKLLQ 353 (412)
T ss_dssp CCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSBSSEEEEECCT-TTGGGCHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCeeeEEEEEcCC-ccCCCCHHHHHHHHHH
Confidence 788999999999999998677899999999999999999999889988888999999998742 21 146789999887
Q ss_pred hcCeEEECCCCC
Q 013883 422 EVGVVAIPTSVF 433 (434)
Q Consensus 422 ~~GV~v~pG~~F 433 (434)
++||.+.||+.|
T Consensus 354 ~~gi~v~~g~~f 365 (412)
T 2x5d_A 354 DAKVSVSPGIGF 365 (412)
T ss_dssp HHCEECEEGGGG
T ss_pred HCCEEEeCchhh
Confidence 779999999766
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=370.45 Aligned_cols=324 Identities=28% Similarity=0.572 Sum_probs=287.1
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+++.|||+.|.|+++.++.+.+++.+++.+....|++..|..+||+++++++.+.+|.+++++ +|++|+|+++++..++
T Consensus 29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~-~v~~~~g~~~a~~~~~ 107 (388)
T 1j32_A 29 GIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGAD-NILVTNGGKQSIFNLM 107 (388)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEESHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChh-hEEEcCCHHHHHHHHH
Confidence 347899999999888889999999998877667899988999999999999998889888888 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
++++++||+|++++|+|+++...++..|++++.++.++ .++.+|++.+++++++++++|++++|+||||.+++.+++++
T Consensus 108 ~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~ 187 (388)
T 1j32_A 108 LAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRA 187 (388)
T ss_dssp HHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHH
Confidence 99999999999999999999999999999999999875 35789999999999888999999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCC-CCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccc
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPG-MYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT 344 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~-~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~ 344 (434)
|+++|++||+++|+||+|.++.+++. ..++..+.. ..++++++.|+||.+|++|+|+||+++++++++.++......+
T Consensus 188 i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~ 267 (388)
T 1j32_A 188 IAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHST 267 (388)
T ss_dssp HHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeCHHHHHHHHHHHhhcc
Confidence 99999999999999999999988663 234444432 1457899999999999999999999999999999988877778
Q ss_pred cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhc
Q 013883 345 FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEV 423 (434)
Q Consensus 345 ~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~ 423 (434)
++.+.+.|.++..+|+..++++++++++++++++.+.+.|+++ |+.+..+++++++|+++...+. +..+++++|++++
T Consensus 268 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ 346 (388)
T 1j32_A 268 SNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGR-SSLDFCSELLDQH 346 (388)
T ss_dssp CSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGGTC-CHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecCCCCC-CHHHHHHHHHHhC
Confidence 8899999999999998767789999999999999999999987 8998888999999987743232 5778999998767
Q ss_pred CeEEECCCCC
Q 013883 424 GVVAIPTSVF 433 (434)
Q Consensus 424 GV~v~pG~~F 433 (434)
||.+.||..|
T Consensus 347 gi~v~~g~~~ 356 (388)
T 1j32_A 347 QVATVPGAAF 356 (388)
T ss_dssp CEECEEGGGG
T ss_pred CEEEeChhhh
Confidence 9999999766
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-46 Score=369.99 Aligned_cols=321 Identities=22% Similarity=0.354 Sum_probs=283.1
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCC-CCCCCcEEEcCChHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLE-VDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~-~~~~~~i~~t~G~~~ai~~~ 186 (434)
+++.|||+.|.|++++++.+.+++.+.+. ....|++..|..+||+++++++.+.+|.+ ++++++|++|+|+++++.++
T Consensus 29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~ 107 (396)
T 3jtx_A 29 GMEAVPLHIGEPKHPTPKVITDALTASLH-ELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSF 107 (396)
T ss_dssp TCCCEECSCCSCCSCCCHHHHHHHHHTGG-GGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHH
T ss_pred CCCeEEeCCcCCCCCCCHHHHHHHHHHhh-hccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHH
Confidence 45789999999999999999999988875 45789999999999999999999998977 66653699999999999999
Q ss_pred HHHccCCC-----CeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCH
Q 013883 187 ILGLINPG-----DEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTR 261 (434)
Q Consensus 187 ~~~l~~~g-----d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~ 261 (434)
+.+++++| |+|+++.|+|.++...+...|++++.++++++++.+|++.+++++++++++|++++||||||.+++.
T Consensus 108 ~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~nptG~~~~~ 187 (396)
T 3jtx_A 108 VQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDL 187 (396)
T ss_dssp HHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEESSCTTTCCCCCH
T ss_pred HHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEECCCCCCCCcCCH
Confidence 99999997 7999999999999999999999999999966677899999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccC----CCCCCCceEEEccCChhhccccceeeeEEeChhhHHHH
Q 013883 262 EELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIAS----LPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGV 336 (434)
Q Consensus 262 e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~----~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l 336 (434)
+++++|+++|++||+++|+||+|.++.+++. ...... +....++++++.||||.++++|+|+||+++++++++.+
T Consensus 188 ~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~ 267 (396)
T 3jtx_A 188 DGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNF 267 (396)
T ss_dssp HHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHH
Confidence 9999999999999999999999999988762 222211 12235789999999999999999999999999999999
Q ss_pred HHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHH
Q 013883 337 RQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFC 416 (434)
Q Consensus 337 ~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (434)
.......+++.+.+.|.++..+|++ ++++++++++++++++.+.+.|++. +.+..+++++|+|+++.. .++.+++
T Consensus 268 ~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~ 342 (396)
T 3jtx_A 268 LLYRTYHGSAMSIPVQRASIAAWDD-EQHVIDNRRLYQEKFERVIPILQQV-FDVKLPDASFYIWLKVPD---GDDLAFA 342 (396)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHTTT-SCCCCCSSSSEEEEECTT---SCHHHHH
T ss_pred HHHHhhcccCCCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhc-CCccCCCeeEEEEEECCC---CCHHHHH
Confidence 8887777788999999999999987 6688999999999999999999887 666788899999998854 2578899
Q ss_pred HHHHHhcCeEEECCCCCC
Q 013883 417 EYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 417 ~~Ll~~~GV~v~pG~~F~ 434 (434)
++|++++||.+.||+.|+
T Consensus 343 ~~l~~~~gi~v~~g~~~~ 360 (396)
T 3jtx_A 343 RNLWQKAAIQVLPGRFLA 360 (396)
T ss_dssp HHHHHHHCEECEEGGGGC
T ss_pred HHHHHHCCEEEeCChHhC
Confidence 999888899999998763
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-46 Score=376.31 Aligned_cols=339 Identities=21% Similarity=0.364 Sum_probs=291.9
Q ss_pred HHHHhhhccccHHHHHHHHhhcCCeeEeCCCCCCCC--CcHHHHHHHHHHHHcC---CCCCCCCCCcHHHHHHHHHHHHh
Q 013883 87 VAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFD--GPDFVKDAAIQAIRDG---KNQYARGHGVPEFNSAIASRFKK 161 (434)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~--~~~~v~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~ 161 (434)
++++..+.+.+.+.++.+....+++|||+.|.|+.. +++.+.+++.+++++. ...|.+..|..+||+++++++.+
T Consensus 54 ~s~~~~~~~~s~~~~~~~~~~~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~ 133 (448)
T 3aow_A 54 FSKKALEMRASEVRELLKLVETSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGK 133 (448)
T ss_dssp CCHHHHHCCCCHHHHHHHHHHTSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhHHHhcCCCcHHHHHHHhccCCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence 344555555666666666666778999999988754 6778888888887653 25799989999999999999987
Q ss_pred hcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc-
Q 013883 162 DSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS- 240 (434)
Q Consensus 162 ~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~- 240 (434)
.+|.+ +++ +|++|+|+++++.+++.+++++||+|++++|+|.++...++..|++++.+|.++ .++|++.|+++++
T Consensus 134 ~~g~~-~~~-~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~--~g~d~~~L~~~l~~ 209 (448)
T 3aow_A 134 RYGIS-QDN-DIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDD--EGMKVEILEEKLKE 209 (448)
T ss_dssp HHCCC-TTS-EEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET--TEECHHHHHHHHHH
T ss_pred hcCcC-Chh-hEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCC--CCCCHHHHHHHHhh
Confidence 88876 777 899999999999999999999999999999999999999999999999999875 2589999999997
Q ss_pred ---c--CCcEE-EecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCC
Q 013883 241 ---K--NTRAI-LMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLG 313 (434)
Q Consensus 241 ---~--~~~~i-~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~S 313 (434)
+ ++++| ++++|+||||.+++.+++++|+++|++||++||+||+|.++.+++. ..++..+. ..++++++.|||
T Consensus 210 ~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~-~~~~vi~~~S~S 288 (448)
T 3aow_A 210 LKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALD-NEGRVIYLGTFS 288 (448)
T ss_dssp HHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGC-TTSCEEEEEEST
T ss_pred hhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcC-CCCCEEEEccch
Confidence 5 78887 4689999999999999999999999999999999999999998764 34455553 346899999999
Q ss_pred hhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhC---C
Q 013883 314 KTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAV---G 388 (434)
Q Consensus 314 K~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~---g 388 (434)
|.++ +|+|+||+++++++++.+.......+++.+.+.|.++..+|++. +++++++++.++++++.+.+.|++. |
T Consensus 289 K~~~-~GlriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g 367 (448)
T 3aow_A 289 KILA-PGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEG 367 (448)
T ss_dssp TTTC-GGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred hhcc-ccccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999 99999999999999999988777667888999999999999985 5788999999999999999999874 7
Q ss_pred CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 389 FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+.+..+++++|+|++++. +. +..+++++|+++ ||.+.||..|+
T Consensus 368 ~~~~~p~~g~~~~v~~~~-~~-~~~~l~~~l~~~-gV~v~pg~~f~ 410 (448)
T 3aow_A 368 VKWTKPEGGMFIWVTLPD-GI-DSKKMLERAIKK-GVAYVPGEAFY 410 (448)
T ss_dssp CEECCCSBSSEEEEECST-TC-CHHHHHHHHHHT-TEECEEGGGGS
T ss_pred eEEeCCCccEEEEEEcCC-CC-CHHHHHHHHHHC-CcEEEcchhhc
Confidence 898888999999999853 22 577899999877 99999998773
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=377.78 Aligned_cols=326 Identities=40% Similarity=0.710 Sum_probs=286.6
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHc---CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRD---GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
.+.|||+.|.+++++++.+.+++.+++.+ ....|++..|..+||+++++++.+.+|.+++++++|++++|+++++.+
T Consensus 37 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~ 116 (429)
T 1yiz_A 37 YKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYA 116 (429)
T ss_dssp HCCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHH
Confidence 37899999999888889999999998876 346798888999999999999998888777665269999999999999
Q ss_pred HHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC---------CCCCCHHHHHhhcccCCcEEEecCCCCCcc
Q 013883 186 TILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP---------DFAIPIEELKSTISKNTRAILMNTPHNPTG 256 (434)
Q Consensus 186 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~---------~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG 256 (434)
++++++++||+|+++.|+|+++...++..|++++.+|++++ ++.+|++.+++++++++++|++++|+||||
T Consensus 117 ~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG 196 (429)
T 1yiz_A 117 TIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLG 196 (429)
T ss_dssp HHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTTTC
T ss_pred HHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECCCCCCCC
Confidence 99999999999999999999999999999999999999864 467999999999988899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHH
Q 013883 257 KMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG 335 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~ 335 (434)
.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+....++++++.|+||.+|++|+|+||+++++++++.
T Consensus 197 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~ 276 (429)
T 1yiz_A 197 KVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKN 276 (429)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEEeCHHHHHH
Confidence 999999999999999999999999999999988764 3445555434578999999999999999999999999999999
Q ss_pred HHHHhhccccCCchHHHHHHHHHHhC-----C--hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCC
Q 013883 336 VRQAHSFLTFATSTPMQWAATAALRA-----P--ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFG 408 (434)
Q Consensus 336 l~~~~~~~~~~~~~~~q~a~~~~L~~-----~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 408 (434)
+.......+++.+.+.|.++..+|+. . ++++++++++++++++.+.+.|++.|+.+..+++++|+|+++....
T Consensus 277 l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~ 356 (429)
T 1yiz_A 277 LQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLD 356 (429)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEEEECSBSSEEEEECCSSC
T ss_pred HHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEEccccc
Confidence 98877777889999999999999987 5 6688999999999999999999988999888889999999885421
Q ss_pred ----------CCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 409 ----------HETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 409 ----------~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
..+..+++++|++++||.+.||+.|+
T Consensus 357 ~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~ 392 (429)
T 1yiz_A 357 SKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFY 392 (429)
T ss_dssp TTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGS
T ss_pred ccccccccccCCCHHHHHHHHHHhCCEEEeCchHhC
Confidence 02456788888877799999997763
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=375.96 Aligned_cols=321 Identities=23% Similarity=0.385 Sum_probs=284.6
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCC-CCcEEEcCChHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDP-EKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~~i~~t~G~~~ai~~~~ 187 (434)
+.|||+.|.+++++++.+.+++.+++.+. ...|++..|..+||+++++++.+.+|.++++ + +|++|+|+++++.+++
T Consensus 48 ~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~-~v~~t~G~~~al~~~~ 126 (404)
T 2o1b_A 48 PLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKED-EVCILYGTKNGLVAVP 126 (404)
T ss_dssp CCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTT-SEEEESSHHHHHHHHH
T ss_pred CEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcc-cEEEcCCcHHHHHHHH
Confidence 58999999998888899999998887542 3578887899999999999999888987776 6 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
++++++||+|++++|+|+++...++..|++++.++.+++++.+|++.+++++++++++|++++|+||||.+++.+++++|
T Consensus 127 ~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l 206 (404)
T 2o1b_A 127 TCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEA 206 (404)
T ss_dssp HHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred HHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCCCCCccCCHHHHHHH
Confidence 99999999999999999999999999999999999886566789999999988788999999999999999999999999
Q ss_pred HHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCC
Q 013883 268 ASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT 347 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~ 347 (434)
+++|++||++||+||+|.++.+++...++..+.+..++++++.||||.+|++|+|+||+++++++++.++.......++.
T Consensus 207 ~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~ 286 (404)
T 2o1b_A 207 IAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALKKYQTHTNAGM 286 (404)
T ss_dssp HHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecCHHHHHHHHHHHhhccCCC
Confidence 99999999999999999999887644455555433468899999999999999999999999999999988777667889
Q ss_pred chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEE
Q 013883 348 STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVA 427 (434)
Q Consensus 348 ~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v 427 (434)
+.+.|.++..+|+..++++++++++++++++.+.+.|++.|+.+.++++++|+|+++.. +. +..+++++|++++||.+
T Consensus 287 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~-~~-~~~~l~~~l~~~~gi~v 364 (404)
T 2o1b_A 287 FGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKADLPFVHAKGGIYVWLETPP-GY-DSEQFEQFLVQEKSILV 364 (404)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECCCBSSEEEEECCT-TC-CHHHHHHHHHHHHCEEC
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCCcceEEEEeCCC-CC-CHHHHHHHHHHHCCEEE
Confidence 99999999999987677899999999999999999999999998889999999998742 22 46789999887779999
Q ss_pred ECCCCC
Q 013883 428 IPTSVF 433 (434)
Q Consensus 428 ~pG~~F 433 (434)
.||+.|
T Consensus 365 ~~g~~f 370 (404)
T 2o1b_A 365 APGKPF 370 (404)
T ss_dssp EESGGG
T ss_pred eCchhh
Confidence 999766
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-46 Score=373.29 Aligned_cols=345 Identities=23% Similarity=0.406 Sum_probs=282.7
Q ss_pred hhhhccCCchHHHHHhhhccccHHHHHHHHhhcCCeeEeCCCCCC----CCCcHHHHHHHHHHHHcC-CCCCCCCCCcHH
Q 013883 76 TIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPN----FDGPDFVKDAAIQAIRDG-KNQYARGHGVPE 150 (434)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~----~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~ 150 (434)
..+.+.+++..+.+.+...+.. +.++|||+.|.|+ +++++.+.+++.+++... ...|.+..|..+
T Consensus 31 ~~~~~~~~i~~~~~~~~~~~~~----------~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~ 100 (427)
T 3dyd_A 31 MAKKTFNPIRAIVDNMKVKPNP----------NKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLS 100 (427)
T ss_dssp ----------------CCCCCT----------TSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHH
T ss_pred HhhcccchHHHHHHHHhhcccC----------CCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHH
Confidence 3344444555555555443321 2356999999886 578899999999988764 468999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCC
Q 013883 151 FNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFA 229 (434)
Q Consensus 151 lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~ 229 (434)
+|+++++++.+. +.+++++ +|++|+|+++++.+++..++++||+|++++|+|.++...++..|++++.+++++ .++.
T Consensus 101 lr~~la~~~~~~-~~~~~~~-~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 178 (427)
T 3dyd_A 101 SREEIASYYHCP-EAPLEAK-DVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWE 178 (427)
T ss_dssp HHHHHHHHHCBT-TBCCCGG-GEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTE
T ss_pred HHHHHHHHHhhc-CCCCChH-HEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCC
Confidence 999999999866 7778888 899999999999999999999999999999999999999999999999999875 4688
Q ss_pred CCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCC-ccccCCCCCCCceEE
Q 013883 230 IPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH-ISIASLPGMYERTVT 308 (434)
Q Consensus 230 ~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~-~~~~~~~~~~~~~i~ 308 (434)
+|++.+++++++++++|++++||||||.+++.+++++|+++|++||+++|+||+|.+|.+++.. ..+..+.. ..++++
T Consensus 179 ~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~-~~~vi~ 257 (427)
T 3dyd_A 179 IDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLST-DVPILS 257 (427)
T ss_dssp ECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCS-SCCEEE
T ss_pred CCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCC-CCcEEE
Confidence 9999999999989999999999999999999999999999999999999999999999987643 34444433 356899
Q ss_pred EccCChhhccccceeeeEEeC-------hhhHHHHHHHhhccccCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHH
Q 013883 309 MNSLGKTFSLTGWKIGWAIAP-------PHLTWGVRQAHSFLTFATSTPMQWAATAALRA-PETYYEELKRDYSAKKAIL 380 (434)
Q Consensus 309 i~S~SK~~g~~G~R~G~~~~~-------~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l 380 (434)
++||||.|+++|+|+||++++ +++++.+...... .++++.+.|.++..+|++ ..+++++++++++++++.+
T Consensus 258 ~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l 336 (427)
T 3dyd_A 258 CGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLC 336 (427)
T ss_dssp EEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred EeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 4677777666543 688999999999999984 4678899999999999999
Q ss_pred HHHhhhC-CCEeecCCeeEEEeeecCCC---CCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 381 VEGLNAV-GFKVFPSSGTYFVVVDHTPF---GHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 381 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
.+.|+++ |+.+..+++++|+|+++... ...++.+++++|++++||++.||+.|+
T Consensus 337 ~~~L~~~~g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~ 394 (427)
T 3dyd_A 337 YGALAAIPGLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFE 394 (427)
T ss_dssp HHHHHHSTTEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGT
T ss_pred HHHHhcCCCceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccC
Confidence 9999997 89988899999999887421 112577899999877899999998763
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-46 Score=368.24 Aligned_cols=318 Identities=30% Similarity=0.574 Sum_probs=283.2
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+++.|+|+.|.++++.++.+.+++.+++......|++..|..+||+++++++.+.+|.+++++ +|++++|+++++..++
T Consensus 40 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~-~v~~~~g~t~al~~~~ 118 (389)
T 1o4s_A 40 GEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPD-QVVVTNGAKQALFNAF 118 (389)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGG-GEEEESHHHHHHHHHH
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHH-HEEEecCHHHHHHHHH
Confidence 457899999999888889999999988876556898888999999999999998888877888 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
.+++++||+|++++|+|+++...++..|++++.+|.++ +++.+|++.+++++++++++|++++|+||||.+++.+++++
T Consensus 119 ~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~ 198 (389)
T 1o4s_A 119 MALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEG 198 (389)
T ss_dssp HHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999975 36789999999999888999999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccC
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA 346 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~ 346 (434)
|+++|++||+++|+||+|.++.+++...++..+....++++++.||||.+|++|+|+||+++++++++.++......+++
T Consensus 199 l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~~~~~~l~~~~~~~~~~ 278 (389)
T 1o4s_A 199 LVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTTSC 278 (389)
T ss_dssp HHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHhhhcccC
Confidence 99999999999999999999988764445555543357899999999999999999999999999999888877766788
Q ss_pred CchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 347 TSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
.+.+.|.++..+|++. +++++++++++++.+.+.|+++|+++.++++++++|+++. .+..+++++|++++||.
T Consensus 279 ~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~gi~ 351 (389)
T 1o4s_A 279 INTVAQYAALKALEVD---NSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKVR----GDDVKFCERLLEEKKVA 351 (389)
T ss_dssp CCHHHHHHHHHHTTCC---CHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBSSEEEEECS----SCHHHHHHHHHHHHCEE
T ss_pred CCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcCCeeecCCcceEEEEeCC----CCHHHHHHHHHHHCCEE
Confidence 8999999999999875 6778899999999999999998998888889999998874 25778999998667999
Q ss_pred EECCCCC
Q 013883 427 AIPTSVF 433 (434)
Q Consensus 427 v~pG~~F 433 (434)
+.||..|
T Consensus 352 v~~g~~f 358 (389)
T 1o4s_A 352 LVPGSAF 358 (389)
T ss_dssp CEEGGGG
T ss_pred EeCchhc
Confidence 9999766
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=375.96 Aligned_cols=316 Identities=19% Similarity=0.246 Sum_probs=264.4
Q ss_pred CCeeEeCCC---CCCCCCc--HHHHHHHHHHHHc-CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCC-cEEEcCChHH
Q 013883 109 HGAINLGQG---FPNFDGP--DFVKDAAIQAIRD-GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEK-EVTVTSGCTE 181 (434)
Q Consensus 109 ~~~i~l~~g---~p~~~~~--~~v~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~-~i~~t~G~~~ 181 (434)
+++|||+.| .|+.+++ +.+.+++.+++.+ ....|.+..|.++||+++++++.+..+..+++++ +|++|+|+++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG 128 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence 378999999 5665554 8999999998887 4568999999999999999999866554445543 6999999999
Q ss_pred HHHHH--HHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEc-CCCCCCCCHHHHHhhcc---cCCcEEEecCCCCCc
Q 013883 182 AIAAT--ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITL-RPPDFAIPIEELKSTIS---KNTRAILMNTPHNPT 255 (434)
Q Consensus 182 ai~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~-~~~~~~~d~~~l~~~i~---~~~~~i~~~~p~NPT 255 (434)
++.++ +.+++++||+|++++|+|.++...++..|++++.+|+ +++++++|++.++++++ ++++++++++|||||
T Consensus 129 al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPt 208 (420)
T 4f4e_A 129 ALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPT 208 (420)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTT
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCC
Confidence 99999 4566899999999999999999999999999999998 34578999999999998 578899999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC--CccccCCCCCCCceEEEccCChhhccccceeeeEEe---Ch
Q 013883 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD--HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA---PP 330 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~--~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~---~~ 330 (434)
|.+++.+++++|+++|++||+++|+||+|.+|.++++ ..++..+.+..+++++++||||.+|++|+|+||+++ ++
T Consensus 209 G~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~ 288 (420)
T 4f4e_A 209 GVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDSK 288 (420)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSSH
T ss_pred CCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCCH
Confidence 9999999999999999999999999999999998752 344444444568899999999999999999999874 45
Q ss_pred hhHH----HHHHHhhccccCCchHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHhhhC----CCEeecCCe
Q 013883 331 HLTW----GVRQAHSFLTFATSTPMQWAATAALRAP------ETYYEELKRDYSAKKAILVEGLNAV----GFKVFPSSG 396 (434)
Q Consensus 331 ~~~~----~l~~~~~~~~~~~~~~~q~a~~~~L~~~------~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~ 396 (434)
++++ .++...+....+++.+.|.+++.+|.+. ++++++++++++++++.+.+.|+++ |+.+..+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 368 (420)
T 4f4e_A 289 DEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQR 368 (420)
T ss_dssp HHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSC
T ss_pred HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECCCc
Confidence 5443 3444444556778899999999999874 4668889999999999999999986 788888899
Q ss_pred eEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 397 TYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
++|+|+++ +. +++.++++++||++.||.
T Consensus 369 g~~~~~~~------~~-~~~~~~l~~~gI~v~~~~ 396 (420)
T 4f4e_A 369 GMFSYSGL------TS-AQVDRLREEFGIYAVSTG 396 (420)
T ss_dssp SSEEECCC------CH-HHHHHHHHHHCEECCTTS
T ss_pred cEEEEeCC------CH-HHHHHHHHhCCEEecCCC
Confidence 99999876 23 455666777899999974
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-46 Score=365.55 Aligned_cols=321 Identities=23% Similarity=0.367 Sum_probs=282.6
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
+.+.|||+.|.+++++++.+.+++.+++.+. ...|++..|..+||+++++++.+.+|.+++++++|++++|+++++.++
T Consensus 24 g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~ 103 (376)
T 2dou_A 24 GVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHL 103 (376)
T ss_dssp TCCCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHH
T ss_pred CCCEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHH
Confidence 4578999999998888899999998887653 467887668899999999999988888776654799999999999999
Q ss_pred HHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 187 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
+++++++||+|++++|+|+++...+...|++++.+|+ ++++.+|++.+++++++++++|++++||||||.+++.+++++
T Consensus 104 ~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~ 182 (376)
T 2dou_A 104 LLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL-REDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEE 182 (376)
T ss_dssp HHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECB-CTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHH
T ss_pred HHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC-CCCCCCCHHHHHHhhccCceEEEECCCCCCcCccCCHHHHHH
Confidence 9999999999999999999999999999999999998 446778999999988878899999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccC
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA 346 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~ 346 (434)
|+++|++||+++|+||+|.++.+++...++..+.+..++++++.||||.+|++|+|+||+++++++++.++......+++
T Consensus 183 l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~ 262 (376)
T 2dou_A 183 ALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLERVKGVIDFN 262 (376)
T ss_dssp HHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCHHHHHHHHHHHHhcccC
Confidence 99999999999999999999988765444444434457889999999999999999999999999999998877766778
Q ss_pred CchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 347 TSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
.+.+.|.++..+|++.++++++++++++++++.+.+.|++. +.+.++++++|+|+++.. +. +..+++++|+++ ||.
T Consensus 263 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~-gi~ 338 (376)
T 2dou_A 263 QYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV-LSLLPPRATMYLWGRLPE-GV-DDLEFGLRLVER-GVA 338 (376)
T ss_dssp SCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT-SEECCCCBSSEEEEECCT-TC-CHHHHHHHHHHT-TEE
T ss_pred CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh-cCccCCCeeEEEEEECCC-CC-CHHHHHHHHHHC-CEE
Confidence 89999999999998877789999999999999999999998 888888899999998753 22 467899999877 999
Q ss_pred EECCCCC
Q 013883 427 AIPTSVF 433 (434)
Q Consensus 427 v~pG~~F 433 (434)
+.||+.|
T Consensus 339 v~~g~~f 345 (376)
T 2dou_A 339 LAPGRGF 345 (376)
T ss_dssp CEEGGGG
T ss_pred EcCchhh
Confidence 9999766
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-47 Score=380.55 Aligned_cols=338 Identities=17% Similarity=0.103 Sum_probs=263.9
Q ss_pred CCCcchhhhccCCchHHHHHhhhccccHHHHHHHHhhcCCeeEeCCC-CCCCC----CcHHHHHHHHHHHHcCC-CCCCC
Q 013883 71 TNQSDTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQG-FPNFD----GPDFVKDAAIQAIRDGK-NQYAR 144 (434)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g-~p~~~----~~~~v~~~~~~~~~~~~-~~Y~~ 144 (434)
+-|.+++..+.++++++++++++++. ++|||++| |.+.. ..+.|+++.+.+++++. +.|.|
T Consensus 19 ~~~~~v~~~p~d~i~~l~~~~~~d~~-------------~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p 85 (420)
T 4h51_A 19 ERWQKIQAQAPDVIFDLAKRAAAAKG-------------PKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLP 85 (420)
T ss_dssp HHHHTCCCCCCCHHHHHHHHHHHCCS-------------SCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHhCCCCCCCChHHHHHHHHhcCCC-------------CCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCC
Confidence 34555666666899999988877543 58999999 54433 23667777766666544 57999
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCCCCC-cEEEcCChHHHHHHHHHH----ccCCCCeEEEcCCCchhHHHHHHHcCCE-E
Q 013883 145 GHGVPEFNSAIASRFKKDSGLEVDPEK-EVTVTSGCTEAIAATILG----LINPGDEVILFAPFYDSYEATLSMAGAK-I 218 (434)
Q Consensus 145 ~~G~~~lr~~ia~~l~~~~g~~~~~~~-~i~~t~G~~~ai~~~~~~----l~~~gd~Vlv~~p~y~~~~~~~~~~G~~-~ 218 (434)
..|+++||+++++++.+.. ...++ ..+-|.|++.++..++.. +.+|||+|++++|+|++|..+++.+|++ +
T Consensus 86 ~~G~p~lr~aia~~~~g~~---~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V 162 (420)
T 4h51_A 86 ISGYQPFIDEAVKIIYGNT---VELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNI 162 (420)
T ss_dssp TTCCHHHHHHHHHHHHC------CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCE
T ss_pred cCChHHHHHHHHHHhcCCC---ccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEE
Confidence 9999999999999986432 22331 234477888777655443 4579999999999999999999999997 5
Q ss_pred EEEEcCC-CCCCCCHHHHHhhcc---cCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCC-
Q 013883 219 KCITLRP-PDFAIPIEELKSTIS---KNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH- 293 (434)
Q Consensus 219 ~~v~~~~-~~~~~d~~~l~~~i~---~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~- 293 (434)
..+++.+ +++.+|++.+.+.+. ++++++++++||||||.+++.++|++|+++|+++++++|+||+|++|.+++..
T Consensus 163 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~ 242 (420)
T 4h51_A 163 CTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDT 242 (420)
T ss_dssp EEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHH
T ss_pred EeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCccc
Confidence 5555543 568889999888774 47788889999999999999999999999999999999999999999987532
Q ss_pred --ccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhH-------HHHHHHhhccccCCchHHHHHHHHHHhCC--
Q 013883 294 --ISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT-------WGVRQAHSFLTFATSTPMQWAATAALRAP-- 362 (434)
Q Consensus 294 --~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~-------~~l~~~~~~~~~~~~~~~q~a~~~~L~~~-- 362 (434)
..+..+....+++++++||||+|+++|||+||++++.+.. .++....+....+++..+|.++..+|.++
T Consensus 243 ~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l 322 (420)
T 4h51_A 243 DAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNEL 322 (420)
T ss_dssp HTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHH
T ss_pred chHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHH
Confidence 2233333456789999999999999999999999865443 34455666678899999999999999985
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHhhhCC----CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 363 ----ETYYEELKRDYSAKKAILVEGLNAVG----FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 363 ----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
++.++.++++|+++|+.+.+.|+++| |.++++++|||.|+++. .++++.| +++||+++||..
T Consensus 323 ~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls-------~e~v~~L-~e~~Vy~~~~gR 392 (420)
T 4h51_A 323 RKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGLS-------KAQCEYC-QNHNIFITVSGR 392 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCC-------HHHHHHH-HHTTEECCTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCcC-------HHHHHHH-HhCCEEEcCCCE
Confidence 34567889999999999999999875 66778899999998762 3566655 677999999864
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-45 Score=367.41 Aligned_cols=321 Identities=29% Similarity=0.530 Sum_probs=283.2
Q ss_pred cCCeeEeCCCCC---CCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFP---NFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p---~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+++.|+|+.|.| +++.++.+.+++.+++......|++..|..++|+++++++.+.+|..++++ +|++|+|+++++.
T Consensus 37 g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~-~v~~t~g~~~al~ 115 (406)
T 1xi9_A 37 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPD-DVRVTAAVTEALQ 115 (406)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEESHHHHHHH
T ss_pred CCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHH-HEEEcCChHHHHH
Confidence 347899999998 778888999999988876656799888999999999999999889888888 8999999999999
Q ss_pred HHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHH
Q 013883 185 ATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREE 263 (434)
Q Consensus 185 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~ 263 (434)
+++.+++++||+|++++|+|+++...++..|++++.++.++ +++.+|++.+++++++++++|++++|+||||.+++.++
T Consensus 116 ~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~ 195 (406)
T 1xi9_A 116 LIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKT 195 (406)
T ss_dssp HHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred HHHHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHH
Confidence 99999999999999999999999999999999999999875 45778999999999888999999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCc-eEEEccCChhhccccceeeeEE--eCh----hhHHHH
Q 013883 264 LNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYER-TVTMNSLGKTFSLTGWKIGWAI--APP----HLTWGV 336 (434)
Q Consensus 264 l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~-~i~i~S~SK~~g~~G~R~G~~~--~~~----~~~~~l 336 (434)
+++|+++|++||+++|+||+|.++.+++...++..+. .++ ++++.||||.+|++|+|+||++ +++ ++++.+
T Consensus 196 l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l 273 (406)
T 1xi9_A 196 LEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT--KDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAI 273 (406)
T ss_dssp HHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHC--SSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcC--CCceEEEEeccccccCCCccEEEEEEEecCchhHHHHHHHH
Confidence 9999999999999999999999998854444555553 567 8999999999999999999999 898 999988
Q ss_pred HHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCC-CCCCHHH
Q 013883 337 RQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPF-GHETDIA 414 (434)
Q Consensus 337 ~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~~ 414 (434)
....... ++.+.+.|.++..+|+...+++++++++++++++.+.+.|+++ |+.+.++++++++|+++... + .+..+
T Consensus 274 ~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 351 (406)
T 1xi9_A 274 DRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPW-KNDKE 351 (406)
T ss_dssp HHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCSC-SSHHH
T ss_pred HHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCeeEEEEEecCccCC-CCHHH
Confidence 8777655 7888999999999997656678899999999999999999988 88888888999999877431 2 25778
Q ss_pred HHHHHHHhcCeEEECCCCC
Q 013883 415 FCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 415 ~~~~Ll~~~GV~v~pG~~F 433 (434)
++++|++++||.+.||..|
T Consensus 352 l~~~l~~~~gi~v~~g~~f 370 (406)
T 1xi9_A 352 FVLDVLHNAHVLFVHGSGF 370 (406)
T ss_dssp HHHHHHHHHCEECEEGGGG
T ss_pred HHHHHHHhCCEEEeCchhc
Confidence 9998886679999999766
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-45 Score=359.03 Aligned_cols=310 Identities=26% Similarity=0.493 Sum_probs=277.4
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+++.|+|+.|.+++++++.+.+++.+++.+....|++..|..+||+++++++++.+|..++++ +|++++|+++++.+++
T Consensus 28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~-~v~~~~g~~~a~~~~~ 106 (370)
T 2z61_A 28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPD-NIIITGGSSLGLFFAL 106 (370)
T ss_dssp TCCCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGG-GEEEESSHHHHHHHHH
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChh-hEEECCChHHHHHHHH
Confidence 457899999999887889999999998887667899888999999999999998899888888 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
.+++++||+|++++|+|+++...++..|++++.++ +|++.+++++++++++|++++||||||.+++.+ |
T Consensus 107 ~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~-------~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~----l 175 (370)
T 2z61_A 107 SSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD-------FTVESLEEALSDKTKAIIINSPSNPLGEVIDRE----I 175 (370)
T ss_dssp HHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC-------SSHHHHHHHCCSSEEEEEEESSCTTTCCCCCHH----H
T ss_pred HHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC-------CCHHHHHHhcccCceEEEEcCCCCCcCcccCHH----H
Confidence 99999999999999999999999999999999887 589999999988899999999999999999987 8
Q ss_pred HHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCC
Q 013883 268 ASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT 347 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~ 347 (434)
+++|++||+++|+||+|.++.+++...++..+.+..++++++.||||.+|++|+|+||+++++++++.++.......++.
T Consensus 176 ~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~ 255 (370)
T 2z61_A 176 YEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEIIEAILKLQQNLFISA 255 (370)
T ss_dssp HHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999887655555555444678999999999999999999999999999999988777667789
Q ss_pred chHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 348 STPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 348 ~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
+.+.|.++..+|+. .++++++++++++++++.+.+.|++.|+++.++++++|+|+++.. +..+++++|++++||.
T Consensus 256 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~gi~ 331 (370)
T 2z61_A 256 PTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNNPIGAYYVFPNIGE----DGREFAYKLLKEKFVA 331 (370)
T ss_dssp CHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCCBTTEECCBCSS----CHHHHHHHHHHHHCEE
T ss_pred CHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCcceEEEEecCC----CHHHHHHHHHHhCCEE
Confidence 99999999988875 467888999999999999999999989988888899999988743 4778999998667999
Q ss_pred EECCCCC
Q 013883 427 AIPTSVF 433 (434)
Q Consensus 427 v~pG~~F 433 (434)
+.||+.|
T Consensus 332 v~~g~~f 338 (370)
T 2z61_A 332 LTPGIGF 338 (370)
T ss_dssp CEEGGGG
T ss_pred EeCchhh
Confidence 9999766
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=364.34 Aligned_cols=318 Identities=21% Similarity=0.231 Sum_probs=284.6
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+.+.|||+.|.+++++++.+.+++.+++.+....|++ .| .++|+++++++++.+|.+++++ +|++|+|+++++..++
T Consensus 22 g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~-~i~~t~g~~~a~~~~~ 98 (377)
T 3fdb_A 22 GQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARPE-WIFPIPDVVRGLYIAI 98 (377)
T ss_dssp CTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGG-GEEEESCHHHHHHHHH
T ss_pred CCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHH-HEEEeCChHHHHHHHH
Confidence 4579999999999999999999999999887788998 78 8999999999999999988888 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
.+++++||+|+++.|+|.++...++..|++++.+|++++ +|++.++++++++++++++++||||||.+++.+++++|
T Consensus 99 ~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l 175 (377)
T 3fdb_A 99 DHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATGG---INLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNEL 175 (377)
T ss_dssp HHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS---CCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHHH
T ss_pred HHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC---CCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999863 99999999999899999999999999999999999999
Q ss_pred HHHHHHcCcEEEEcCcCCccccCC--CCccccCCCCCCCceEEEccCChhhccccceeeeEEe-ChhhHHHHHHHhhccc
Q 013883 268 ASLCIENDVLVFSDEVYDKLAFEM--DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA-PPHLTWGVRQAHSFLT 344 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~~~~--~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~-~~~~~~~l~~~~~~~~ 344 (434)
+++|++||+++|+||+|.++.+++ ...++..+.. .++++++.||||.+|++|+|+||+++ ++++++.++......+
T Consensus 176 ~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~ 254 (377)
T 3fdb_A 176 CDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTA-ASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIK 254 (377)
T ss_dssp HHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHH-HHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHH
T ss_pred HHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccC-CCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHhhc
Confidence 999999999999999999998876 3334444322 56889999999999999999999887 6888888887776667
Q ss_pred cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC--CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHh
Q 013883 345 FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV--GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKE 422 (434)
Q Consensus 345 ~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 422 (434)
++.+.+.+.++..+|++.++++++++++++++++.+.+.|++. |+.+.++++++++|+++...+. +.+++.+|+++
T Consensus 255 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 332 (377)
T 3fdb_A 255 DGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTTI--EGSPSEFFIEK 332 (377)
T ss_dssp CCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSCC--CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECcccCC--CHHHHHHHHHh
Confidence 8899999999999999877889999999999999999999985 8999999999999998865333 24688888888
Q ss_pred cCeEEECCCCCC
Q 013883 423 VGVVAIPTSVFY 434 (434)
Q Consensus 423 ~GV~v~pG~~F~ 434 (434)
+||.+.||+.|+
T Consensus 333 ~gi~v~~g~~~~ 344 (377)
T 3fdb_A 333 AKVAMNDGAWFG 344 (377)
T ss_dssp HCEECEEGGGGC
T ss_pred CCEEecCChhcc
Confidence 899999998764
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=370.96 Aligned_cols=315 Identities=23% Similarity=0.350 Sum_probs=275.2
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHH-----cCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIR-----DGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~-----~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+.++|||+.|+++++.++.+.+++.+++. .....|.+..|..+||+++++++. +|..++++ +|++++|++++
T Consensus 68 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~-~i~~t~G~~~a 144 (449)
T 3qgu_A 68 DAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAAD-EIFISDGSKCD 144 (449)
T ss_dssp TCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGG-GEEEESCHHHH
T ss_pred CCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHH-HEEEccCHHHH
Confidence 45789999999999999999999999887 445689998999999999999997 77778888 89999999999
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCE----------EEEEEcCCC-CCCCCHHHHHhhcccCCcEEEecCC
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYEATLSMAGAK----------IKCITLRPP-DFAIPIEELKSTISKNTRAILMNTP 251 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~----------~~~v~~~~~-~~~~d~~~l~~~i~~~~~~i~~~~p 251 (434)
+..+ ..++++||+|++++|+|.++...+...|++ ++.++++++ ++..|++.+ +++++|++++|
T Consensus 145 l~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~l~~p 218 (449)
T 3qgu_A 145 IARI-QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----KRTDIIFFCSP 218 (449)
T ss_dssp HHHH-HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----CCCSEEEEESS
T ss_pred HHHH-HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc-----CCCCEEEEeCC
Confidence 9988 888999999999999999999999999999 999998763 455565432 57899999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeCh
Q 013883 252 HNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP 330 (434)
Q Consensus 252 ~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~ 330 (434)
|||||.+++.+++++|+++|++||+++|+||+|.+|.+++. ...+..+....++++++.||||.+|++|+|+||+++++
T Consensus 219 ~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~ 298 (449)
T 3qgu_A 219 NNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPK 298 (449)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCH
Confidence 99999999999999999999999999999999999988763 34556665556789999999999999999999999998
Q ss_pred hhHH--------HHHHHhhccccCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEe
Q 013883 331 HLTW--------GVRQAHSFLTFATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVV 401 (434)
Q Consensus 331 ~~~~--------~l~~~~~~~~~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 401 (434)
++++ .+........++.+.+.|.++..+|++ ..+++++++++++++++.+.+.|+++|+.+.++++++|+|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 378 (449)
T 3qgu_A 299 ALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYGGDDAPYIW 378 (449)
T ss_dssp TCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEESSSSSEEE
T ss_pred HHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCeeEEE
Confidence 8765 455555556668899999999999986 3567889999999999999999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 402 VDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 402 ~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+++. +. ++.+++++|++++||.+.||+.|+
T Consensus 379 ~~~~--~~-~~~~~~~~l~~~~gI~v~pg~~f~ 408 (449)
T 3qgu_A 379 VGFP--GK-PSWDVFAEILERCNIVTTPGSGYG 408 (449)
T ss_dssp EECT--TS-CHHHHHHHHHHHHCEECEEGGGGC
T ss_pred EECC--CC-CHHHHHHHHHHHCCEEEecchHhC
Confidence 9985 33 578899999988899999998763
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-45 Score=361.88 Aligned_cols=314 Identities=23% Similarity=0.447 Sum_probs=272.1
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcC----CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDG----KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~----~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
.+.|||+.|+|++++++.+.+++.+++.+. ...|++..|..+||+++++++.+.+|..++++ +|++|+|+++++.
T Consensus 35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~-~i~~~~g~~~al~ 113 (398)
T 3ele_A 35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNAD-NLYMTMGAAASLS 113 (398)
T ss_dssp GGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEESSHHHHHH
T ss_pred CCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChH-HEEEccCHHHHHH
Confidence 478999999999999999999999988764 46899989999999999999999999888888 8999999999999
Q ss_pred HHHHHccCCC-CeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHH
Q 013883 185 ATILGLINPG-DEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREE 263 (434)
Q Consensus 185 ~~~~~l~~~g-d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~ 263 (434)
.++.+++++| |+|++++|+|.++...++..|++++.+|++++++++|++.+++++++++++|++++||||||.+++.++
T Consensus 114 ~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~ 193 (398)
T 3ele_A 114 ICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEET 193 (398)
T ss_dssp HHHHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHH
T ss_pred HHHHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHH
Confidence 9999999999 999999999999999999999999999998767899999999999989999999999999999999999
Q ss_pred HHHHHHHHHH------cCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhH----
Q 013883 264 LNVIASLCIE------NDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT---- 333 (434)
Q Consensus 264 l~~i~~la~~------~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~---- 333 (434)
+++|+++|++ ||+++|+||+|.++.+++..... .....++++++.||||.+|++|+|+||++++++++
T Consensus 194 l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~--~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 271 (398)
T 3ele_A 194 IKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPF--VTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAE 271 (398)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCC--GGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHH
T ss_pred HHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCC--hHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHH
Confidence 9999999999 99999999999999887643222 22235789999999999999999999999998743
Q ss_pred --HHHHHHhhc-cccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCC
Q 013883 334 --WGVRQAHSF-LTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHE 410 (434)
Q Consensus 334 --~~l~~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (434)
..+...... ..++.+.+.|.++..+|++.. .+++++++++.+.+.|+++|+.+.++++++|+|++++. .
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---~ 343 (398)
T 3ele_A 272 LYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG-----DINAYKENRDLLYEGLTRIGYHCFKPDGAFYMFVKALE---D 343 (398)
T ss_dssp HHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC-----CHHHHHHHHHHHHHHHHHHTCCEECCSBSSEEEEECSS---S
T ss_pred HHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHcCCeecCCCeeEEEEEEcCC---C
Confidence 333333332 356778888988888887643 36778889999999999889999999999999998743 2
Q ss_pred CHHHHHHHHHHhcCeEEECCCCCC
Q 013883 411 TDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 411 ~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+..++++.| .++||.+.||+.|+
T Consensus 344 ~~~~~~~~l-~~~gi~v~~g~~~~ 366 (398)
T 3ele_A 344 DSNAFCEKA-KEEDVLIVAADGFG 366 (398)
T ss_dssp CHHHHHHHH-HTTTEECEESGGGT
T ss_pred CHHHHHHHH-HHCCEEEeCccccC
Confidence 577888876 45699999998763
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=365.04 Aligned_cols=324 Identities=18% Similarity=0.276 Sum_probs=286.5
Q ss_pred CeeEeCCCCCC-CCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 110 GAINLGQGFPN-FDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 110 ~~i~l~~g~p~-~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
..|||+.|.+. +++++.+++++.+++.+. ...|.+..|..++++++++++.+.+|.+++++++|++++|+++++..++
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~ 119 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAV 119 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHH
Confidence 36999998766 678899999999988754 3468888899999999999999999988877338999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcC-----CCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLR-----PPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTRE 262 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~-----~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e 262 (434)
.+++++||+|+++.|+|.++...++..|++++.++++ ++++.+|++.+++++++++++|++++||||||.+++.+
T Consensus 120 ~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~ 199 (407)
T 3nra_A 120 AATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAE 199 (407)
T ss_dssp HTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHH
T ss_pred HHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCHH
Confidence 9999999999999999999999999999999999984 24788999999999988999999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEcCcCCccccCCCC-ccccCCC-CCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHh
Q 013883 263 ELNVIASLCIENDVLVFSDEVYDKLAFEMDH-ISIASLP-GMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAH 340 (434)
Q Consensus 263 ~l~~i~~la~~~~~~iI~Deay~~~~~~~~~-~~~~~~~-~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~ 340 (434)
++++|+++|++||+++|+||+|.++.+++.. ..+..+. ...++++++.||||.+|++|+|+||+++++++++.++...
T Consensus 200 ~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~ 279 (407)
T 3nra_A 200 EIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQ 279 (407)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHH
Confidence 9999999999999999999999999887643 3444444 4567899999999999999999999999999999998888
Q ss_pred hccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHH
Q 013883 341 SFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYL 419 (434)
Q Consensus 341 ~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 419 (434)
....++.+.+.+.++..+|++.++++++.+++++++++.+.+.|+++ |+.+..+++++|+|+++...+. +..+++++|
T Consensus 280 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 358 (407)
T 3nra_A 280 AIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAV-APAEFVKIL 358 (407)
T ss_dssp HHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBSS-CHHHHHHHH
T ss_pred hhhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCCC-CHHHHHHHH
Confidence 87788888999999999998766788889999999999999999987 8998888999999998754333 577899999
Q ss_pred HHhcCeEEECCCCCC
Q 013883 420 IKEVGVVAIPTSVFY 434 (434)
Q Consensus 420 l~~~GV~v~pG~~F~ 434 (434)
++++||.+.||+.|+
T Consensus 359 ~~~~gi~v~~g~~~~ 373 (407)
T 3nra_A 359 RLQAGVVVTPGTEFS 373 (407)
T ss_dssp HHHHCEECEEGGGTC
T ss_pred HHhCCEEEeCchhhC
Confidence 887899999998763
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=368.07 Aligned_cols=340 Identities=16% Similarity=0.126 Sum_probs=274.5
Q ss_pred CcchhhhccCCchHHHHHhhhccccHHHHHHHHhhcCCeeEeCCCCC-CCCCcH----HHHHHHHHHHHc-CCCCCCCCC
Q 013883 73 QSDTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFP-NFDGPD----FVKDAAIQAIRD-GKNQYARGH 146 (434)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p-~~~~~~----~v~~~~~~~~~~-~~~~Y~~~~ 146 (434)
|.+.+..+.+..+...+.+.+... +++|||+.|.| +...++ .+.+++.+...+ ....|.+..
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~------------~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~ 71 (401)
T 7aat_A 4 WSHVEMGPPDPILGVTEAFKRDTN------------SKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIA 71 (401)
T ss_dssp STTCCCCCCCHHHHHHHHHHHCCC------------TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTT
T ss_pred hhcCCCCCCChhHHHHHHHhhCCC------------CCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCC
Confidence 333344444455666666655432 36899999987 665433 467766666553 567899999
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCCcEEE--cCChHHHHHHHHHHcc---CCCCeEEEcCCCchhHHHHHHHcCCEEEEE
Q 013883 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTV--TSGCTEAIAATILGLI---NPGDEVILFAPFYDSYEATLSMAGAKIKCI 221 (434)
Q Consensus 147 G~~~lr~~ia~~l~~~~g~~~~~~~~i~~--t~G~~~ai~~~~~~l~---~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v 221 (434)
|.++||+++++++.+.+|..++++ +|++ |+|+++++.+++..+. ++||+|++++|+|.+|...++..|++++.+
T Consensus 72 g~~~lr~~ia~~~~~~~~~~~~~~-~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~ 150 (401)
T 7aat_A 72 GLADFTRASAELALGENSEAFKSG-RYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAY 150 (401)
T ss_dssp CCHHHHHHHHHHHHCTTCHHHHTT-CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHhcCCCccccccC-ceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEee
Confidence 999999999999998888877788 7877 9999999998876654 899999999999999999999999999999
Q ss_pred EcCC-CCCCCCHHHHHhhcc---cCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC---Cc
Q 013883 222 TLRP-PDFAIPIEELKSTIS---KNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD---HI 294 (434)
Q Consensus 222 ~~~~-~~~~~d~~~l~~~i~---~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~---~~ 294 (434)
|+++ +++++|++.+++.+. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..
T Consensus 151 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~ 230 (401)
T 7aat_A 151 RYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAW 230 (401)
T ss_dssp ECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTH
T ss_pred eeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHH
Confidence 9864 468899997777664 4788999999999999999999999999999999999999999999988652 22
Q ss_pred cccCCCCCCCceEEEccCChhhccccceeeeEEe---Chh----hHHHHHHHhhccccCCchHHHHHHHHHHhCC-----
Q 013883 295 SIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA---PPH----LTWGVRQAHSFLTFATSTPMQWAATAALRAP----- 362 (434)
Q Consensus 295 ~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~----- 362 (434)
++..+....+++++++||||.||++|+|+||+++ +++ +...++...+....+++...|.++..+|++.
T Consensus 231 ~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 310 (401)
T 7aat_A 231 ALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKE 310 (401)
T ss_dssp HHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHhcCCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHH
Confidence 3333333467899999999999999999999886 555 5566666666667788888899998888874
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHhhhCC----CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 363 -ETYYEELKRDYSAKKAILVEGLNAVG----FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 363 -~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
.+++++++++++++++.+.+.|+++| +.+.++++++|+|+++. .+++.+|++++||++.||..
T Consensus 311 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ll~~~gi~v~~~~R 378 (401)
T 7aat_A 311 WLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK-------PEQVERLTKEFSIYMTKDGR 378 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC-------HHHHHHHHHHHCEECCTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCC-------HHHHHHHHHhCCEeccCCCe
Confidence 45678889999999999999999875 77778999999998762 35667888888999998753
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=374.93 Aligned_cols=334 Identities=19% Similarity=0.310 Sum_probs=274.0
Q ss_pred cHHHHHHHHhhcCCeeEeCCCCCCCCCcHHHHHHHHHHHHc----CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCc
Q 013883 97 TIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRD----GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKE 172 (434)
Q Consensus 97 ~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~ 172 (434)
..++++..+...+++|+|+.| +.. .|..+.+++.+++.. ....|.+..|..+||+++++++.+.+|..++++ +
T Consensus 83 ~~~~~~~~~~~~p~~i~~~~~-~~~-~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~ 159 (500)
T 3tcm_A 83 TFFREVLALCDHPDLLQREEI-KTL-FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANAD-D 159 (500)
T ss_dssp HHHHHHHHHHHSGGGGGCTTH-HHH-SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGG-G
T ss_pred cHHHHHHHhhcCcccccCCCC-ccc-CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcc-c
Confidence 334445555555556666555 222 344455555666655 346899999999999999999999999989888 8
Q ss_pred EEEcCChHHHHHHHHHHcc-CCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC-CCCCCHHHHHhhccc------CCc
Q 013883 173 VTVTSGCTEAIAATILGLI-NPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISK------NTR 244 (434)
Q Consensus 173 i~~t~G~~~ai~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~------~~~ 244 (434)
|++|+|+++++..++.+++ ++||+|++++|+|+.+...+...|++++.++++++ ++++|++.|++++++ +++
T Consensus 160 i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k 239 (500)
T 3tcm_A 160 IFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVR 239 (500)
T ss_dssp EEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEE
T ss_pred EEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCce
Confidence 9999999999999999998 89999999999999999999999999999999864 579999999999986 689
Q ss_pred EEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC--CccccC----CC--CCCCceEEEccCChhh
Q 013883 245 AILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD--HISIAS----LP--GMYERTVTMNSLGKTF 316 (434)
Q Consensus 245 ~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~--~~~~~~----~~--~~~~~~i~i~S~SK~~ 316 (434)
+|++++||||||.+++.+++++|+++|++||+++|+||+|.++.|+++ ..++.. +. ....++++++||||.|
T Consensus 240 ~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~ 319 (500)
T 3tcm_A 240 ALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGY 319 (500)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTT
T ss_pred EEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccC
Confidence 999999999999999999999999999999999999999999998643 333321 11 1234689999999999
Q ss_pred -ccccceeeeEEe---ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC----------hHHHHHHHHHHHHHHHHHHH
Q 013883 317 -SLTGWKIGWAIA---PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP----------ETYYEELKRDYSAKKAILVE 382 (434)
Q Consensus 317 -g~~G~R~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~----------~~~~~~~~~~~~~~~~~l~~ 382 (434)
|++|+|+||+++ ++++++.+.+... ..++++.+.|.++..+|+.+ .+++++++++++++++.+.+
T Consensus 320 ~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 398 (500)
T 3tcm_A 320 YGECGKRGGYFEITGFSAPVREQIYKIAS-VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEH 398 (500)
T ss_dssp TCCGGGCCEEEEEESCCTTHHHHHHHHHH-TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccceEEEEEeCCCHHHHHHHHHHHh-cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998 8999999887764 56788999999999999853 24566778899999999999
Q ss_pred HhhhC-CCEeecCCeeEEEeeecCC----------CCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 383 GLNAV-GFKVFPSSGTYFVVVDHTP----------FGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 383 ~L~~~-g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
.|+++ |+.+.+++++||+|+++.. .+..++..++.++++++||+++||+.|+
T Consensus 399 ~L~~~~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~ 461 (500)
T 3tcm_A 399 AFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFG 461 (500)
T ss_dssp HHHTSTTEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTC
T ss_pred HHhcCCCcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccC
Confidence 99998 9999999999999976531 1222244556778888899999999885
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-45 Score=365.62 Aligned_cols=321 Identities=21% Similarity=0.307 Sum_probs=285.1
Q ss_pred hcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCC-CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 107 IKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 107 ~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
.+++.|||+.|.|++++++.+.+++.+++.+.. ..|.+..|..++|+++++++++.+|.+++++ +|++|+|+++++.+
T Consensus 42 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~-~i~~t~g~t~al~~ 120 (437)
T 3g0t_A 42 TGTKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPAR-ACVPTVGSMQGCFV 120 (437)
T ss_dssp HTCCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEESHHHHHHHH
T ss_pred cCCCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcc-cEEEeCCHHHHHHH
Confidence 346899999999999999999999999988655 7899999999999999999999999998888 89999999999999
Q ss_pred HHHHcc--CCCC--eEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhc-ccCCcEEEecCCCCCcccCCC
Q 013883 186 TILGLI--NPGD--EVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTI-SKNTRAILMNTPHNPTGKMFT 260 (434)
Q Consensus 186 ~~~~l~--~~gd--~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i-~~~~~~i~~~~p~NPTG~~~~ 260 (434)
++.+++ ++|| +|++++|+|.++...++..|++++.++++++++.+|++.+++++ ++++++|++++||||||.+++
T Consensus 121 ~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~ 200 (437)
T 3g0t_A 121 SFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMT 200 (437)
T ss_dssp HHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCC
T ss_pred HHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCC
Confidence 999998 9999 99999999999999999999999999998667789999999999 678999999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccc-------cCCCCCCCceEEEccCChhhccccceeeeEEeChhhH
Q 013883 261 REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISI-------ASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT 333 (434)
Q Consensus 261 ~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~-------~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~ 333 (434)
.+++++|+++|++||+++|+||+|.++.+++ ..++ ..+....++++++.|+||.+|++|+|+||++++++++
T Consensus 201 ~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~ 279 (437)
T 3g0t_A 201 DEELRIIGELATKHDVIVIEDLAYFGMDFRK-DYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLY 279 (437)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECTTTTCCTTS-CCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHH
T ss_pred HHHHHHHHHHHHHCCcEEEEEcchhhcccCC-CcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHh
Confidence 9999999999999999999999999988873 3333 4443346789999999999999999999999999998
Q ss_pred H-H-----------------HHHHhhccccCCchHHHHHHHHHHhCChHH---HHHHHHHHHHHHHHHHHHhhhCCCEee
Q 013883 334 W-G-----------------VRQAHSFLTFATSTPMQWAATAALRAPETY---YEELKRDYSAKKAILVEGLNAVGFKVF 392 (434)
Q Consensus 334 ~-~-----------------l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~---~~~~~~~~~~~~~~l~~~L~~~g~~~~ 392 (434)
+ . +........++.+.+.|.++..+|+..+++ +++++++++++++.+.+.|+++|+.+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 359 (437)
T 3g0t_A 280 EREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIV 359 (437)
T ss_dssp HCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTTEEES
T ss_pred hhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEe
Confidence 8 7 766666667889999999999999874434 888999999999999999999999887
Q ss_pred -------cCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 393 -------PSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 393 -------~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
++.+++|+|+++. +. +..+++++|+++ ||.+.||..|
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~--~~-~~~~l~~~L~~~-gi~v~~~~~~ 403 (437)
T 3g0t_A 360 YDKDGNEPLADGFYFTVGYK--GM-DSSKLIEKFVRY-GMCAITLKTT 403 (437)
T ss_dssp SCEETTEECCSSSEEEEEET--TC-CHHHHHHHHHHT-TEECEESTTT
T ss_pred ccccCCCCCceeEEEEEecC--CC-CHHHHHHHHHHc-CeEEeecccc
Confidence 4488889999875 32 578899998765 9999999865
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=372.71 Aligned_cols=336 Identities=15% Similarity=0.175 Sum_probs=272.8
Q ss_pred hhhhccCCchHHHHHhhhccccHHHHHHHHhhcCCeeEeCCCCC-CCCCcHHHHHHHHHH---HH----cCCCCCCCCCC
Q 013883 76 TIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFP-NFDGPDFVKDAAIQA---IR----DGKNQYARGHG 147 (434)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p-~~~~~~~v~~~~~~~---~~----~~~~~Y~~~~G 147 (434)
++..+.++++.+.+++++.+. +++|||+.|.+ ++..++.+.+++.++ +. .....|.+..|
T Consensus 28 ~~~~~~~~i~~~~~~~~~~~~------------~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G 95 (448)
T 3meb_A 28 FPASPPDAILNLTVLYNADTN------------PKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAG 95 (448)
T ss_dssp CCCCCCCTTHHHHHHHHHCCC------------TTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTC
T ss_pred CCCCCCChHHHHHHHHHhCCC------------CCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcc
Confidence 344444677888888876554 26899999977 776655555555554 33 34578999999
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEE--cCChHHHHHH--HHHHccCCCCeEEEcCCCchhHHHHHH----HcCCEEE
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTV--TSGCTEAIAA--TILGLINPGDEVILFAPFYDSYEATLS----MAGAKIK 219 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~--t~G~~~ai~~--~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~G~~~~ 219 (434)
.++||+++++++.+.....++++ +|++ |+|+++++.+ .+.+++.+||+|++++|+|.+|...++ ..|++++
T Consensus 96 ~~~lr~~ia~~l~g~~~~~~~~~-~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~ 174 (448)
T 3meb_A 96 FPLFLEAAQFLMFGKDSKAAQEG-RIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYK 174 (448)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTT-CEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCE
T ss_pred hHHHHHHHHHHhcCCCccccCcC-cEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEE
Confidence 99999999999842111112256 8999 9999999987 556778999999999999999999999 9999999
Q ss_pred EEEc-CCC-CCCCCHHHHHhhccc---CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC---
Q 013883 220 CITL-RPP-DFAIPIEELKSTISK---NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM--- 291 (434)
Q Consensus 220 ~v~~-~~~-~~~~d~~~l~~~i~~---~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~--- 291 (434)
.+|+ +++ ++.+|++.+++++++ +++++++++||||||.+++.++|++|+++|++||+++|+||+|++|.+++
T Consensus 175 ~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~ 254 (448)
T 3meb_A 175 EYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEA 254 (448)
T ss_dssp EECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHH
T ss_pred EEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCccc
Confidence 9999 444 589999999999974 57788899999999999999999999999999999999999999998775
Q ss_pred CCccccCCCCCCCceEEEccCChhhccccceeeeE--Ee--------C-h----hhHHHHHHHhhccccCCchHHHHHHH
Q 013883 292 DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWA--IA--------P-P----HLTWGVRQAHSFLTFATSTPMQWAAT 356 (434)
Q Consensus 292 ~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~--~~--------~-~----~~~~~l~~~~~~~~~~~~~~~q~a~~ 356 (434)
+...+..+....++++++.||||.||++|+|+||+ ++ + + +++++++...+....+++.+.|.++.
T Consensus 255 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~ 334 (448)
T 3meb_A 255 DAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQ 334 (448)
T ss_dssp HTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred CchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHH
Confidence 22334433334578999999999999999999998 66 4 4 67777777777777889999999999
Q ss_pred HHHhCCh------HHHHHHHHHHHHHHHHHHHHhhhC---C------CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHH
Q 013883 357 AALRAPE------TYYEELKRDYSAKKAILVEGLNAV---G------FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIK 421 (434)
Q Consensus 357 ~~L~~~~------~~~~~~~~~~~~~~~~l~~~L~~~---g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~ 421 (434)
.+|.+.+ +++++++++++++++.+.+.|+++ + |.+..+++++|+|+++ +.+++.+|++
T Consensus 335 ~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~~ll~ 407 (448)
T 3meb_A 335 VIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGL-------TPEHVDYLKE 407 (448)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCC-------CHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCC-------CHHHHHHHHH
Confidence 9998752 447888999999999999999987 4 6667889999999876 2478888888
Q ss_pred hcCeEEECCC
Q 013883 422 EVGVVAIPTS 431 (434)
Q Consensus 422 ~~GV~v~pG~ 431 (434)
++||++.||+
T Consensus 408 ~~gV~v~~G~ 417 (448)
T 3meb_A 408 KWSIYLVKAG 417 (448)
T ss_dssp HHCEEECSGG
T ss_pred hCCEEEeCCC
Confidence 8999999974
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-44 Score=355.30 Aligned_cols=321 Identities=22% Similarity=0.316 Sum_probs=283.8
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.|||+.|.+++++++.+.+++.+++.+....|.+. ..++++++++++.+.+|.+++++ +|++++|+++++.+++.+
T Consensus 28 ~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~-~i~~~~g~~~a~~~~~~~ 104 (391)
T 3dzz_A 28 KELPMWIAEMDFKIAPEIMASMEEKLKVAAFGYESV--PAEYYKAVADWEEIEHRARPKED-WCVFASGVVPAISAMVRQ 104 (391)
T ss_dssp TCEECCSSCCSSCCCHHHHHHHHHHHTTCCCCCBCC--CHHHHHHHHHHHHHHHSCCCCGG-GEEEESCHHHHHHHHHHH
T ss_pred CceeccccCCCCCCCHHHHHHHHHHHhcCcCCCCCC--CHHHHHHHHHHHHHHhCCCCCHH-HEEECCCHHHHHHHHHHH
Confidence 789999999999999999999999988777778775 58999999999999999888888 899999999999999999
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcC--CCCCCCCHHHHHhhcc-cCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLR--PPDFAIPIEELKSTIS-KNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~--~~~~~~d~~~l~~~i~-~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
++++||+|+++.|+|.++...+...|++++.+|++ +.++.+|++.++++++ +++++|++++||||||.+++.+++++
T Consensus 105 l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~ 184 (391)
T 3dzz_A 105 FTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKR 184 (391)
T ss_dssp HSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred hCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHH
Confidence 99999999999999999999999999999999985 2345689999999998 68999999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCC-CCCceEEEccCChhhccccceeeeEEeC-hhhHHHHHHHhh-c
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPG-MYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHS-F 342 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~-~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~-~ 342 (434)
|+++|++||+++|+||+|.++.+++. ..++..+.. ..++++++.|+||.+|++|+|+||++++ +++++.++.... .
T Consensus 185 i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~ 264 (391)
T 3dzz_A 185 IAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLA 264 (391)
T ss_dssp HHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhh
Confidence 99999999999999999999988763 445555532 2578999999999999999999999997 889888877654 3
Q ss_pred cccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh-C-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHH
Q 013883 343 LTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA-V-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLI 420 (434)
Q Consensus 343 ~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll 420 (434)
..++.+.+.+.++..+|+..++++++++++++++++.+.+.|++ + |+.+.++++++++|+++...+. +..+++++|+
T Consensus 265 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ 343 (391)
T 3dzz_A 265 GIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISALGM-NAEDFCKYLR 343 (391)
T ss_dssp TCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGGCS-CHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhcCC-CHHHHHHHHH
Confidence 45688899999999999877788999999999999999999998 4 8999999999999998754333 5788999998
Q ss_pred HhcCeEEECCCCCC
Q 013883 421 KEVGVVAIPTSVFY 434 (434)
Q Consensus 421 ~~~GV~v~pG~~F~ 434 (434)
+++||.+.||+.|.
T Consensus 344 ~~~gi~v~~g~~~~ 357 (391)
T 3dzz_A 344 EKTGLIISAGNGYR 357 (391)
T ss_dssp HHHCEECEESGGGC
T ss_pred HhCCEEEeCchhhC
Confidence 67799999998763
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-44 Score=358.23 Aligned_cols=317 Identities=25% Similarity=0.441 Sum_probs=279.1
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+++.|+|+.|.++++.++.+.+++ +++.+....|++..|..+||+++++++.+.+|..++++ +|++|+|+++++.+++
T Consensus 42 g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~-~v~~~~g~t~a~~~~~ 119 (409)
T 2gb3_A 42 GVRIHHLNIGQPDLKTPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPE-NVLVTNGGSEAILFSF 119 (409)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGG-GEEEESHHHHHHHHHH
T ss_pred CCCEEeccCCCCCCCCCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHH-HEEEeCCHHHHHHHHH
Confidence 346899999999888888899999 88866556899888999999999999998889888888 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
.+++++||+|++++|+|+++...+...|++++.+|+++ +++.+ ++.|++++++++++|++++|+||||.+++.+++++
T Consensus 120 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~ 198 (409)
T 2gb3_A 120 AVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRY 198 (409)
T ss_dssp HHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCcCCeEEEECCCCCCCCCCcCHHHHHH
Confidence 99999999999999999999999999999999999875 35555 88999999888999999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeCh-hhHHHHHHHhhcccc
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP-HLTWGVRQAHSFLTF 345 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~-~~~~~l~~~~~~~~~ 345 (434)
|+++|++||+++|+||+|.++.+++...++ +.+..++++++.||||.+|++|+|+||+++++ ++++.++.......
T Consensus 199 i~~~~~~~~~~li~Dea~~~~~~~~~~~~~--~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~~~- 275 (409)
T 2gb3_A 199 LVEIAERHGLFLIVDEVYSEIVFRGEFASA--LSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRL- 275 (409)
T ss_dssp HHHHHHHTTCEEEEECTTTTCBCSSCCCCG--GGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSC-
T ss_pred HHHHHHHcCCEEEEECcccccccCCCCCCc--cccCCCCEEEEecchhccCCccceEEEEEECcHHHHHHHHHHHhccC-
Confidence 999999999999999999998887644333 22234678999999999999999999999998 99998887766555
Q ss_pred CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEe-ecCCeeEEEeeecCCCCCCCHHHHHHHHHHh--
Q 013883 346 ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKV-FPSSGTYFVVVDHTPFGHETDIAFCEYLIKE-- 422 (434)
Q Consensus 346 ~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~-- 422 (434)
+.+.+.|.++..+|+...+++++++++++++++.+.+.|++.|+.+ ..+++++++|+++. + .+..+++++|+++
T Consensus 276 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~l~~~~~ 352 (409)
T 2gb3_A 276 APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELP--V-EDAEEFARWMLTDFN 352 (409)
T ss_dssp CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECS--S-SCHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCCCeeEEEEEEeC--C-CCHHHHHHHHHhccc
Confidence 8889999999999987677889999999999999999999889888 78888999998874 2 2577899999877
Q ss_pred ---cCeEEECCCCC
Q 013883 423 ---VGVVAIPTSVF 433 (434)
Q Consensus 423 ---~GV~v~pG~~F 433 (434)
+||.+.||..|
T Consensus 353 ~~~~gi~v~~g~~f 366 (409)
T 2gb3_A 353 MDGETTMVAPLRGF 366 (409)
T ss_dssp BTTEEEECEEGGGG
T ss_pred cccCcEEEeCchHh
Confidence 69999999766
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=357.30 Aligned_cols=309 Identities=38% Similarity=0.695 Sum_probs=271.5
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
++.|||+.|.|++++++.+.+++.+++.+ ...|++..|..+||++++++++ ++++ +|++++|+++++.+++.
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~~------~~~~-~v~~~~g~~~a~~~~~~ 96 (381)
T 1v2d_A 25 LGAVNLGQGFPSNPPPPFLLEAVRRALGR-QDQYAPPAGLPALREALAEEFA------VEPE-SVVVTSGATEALYVLLQ 96 (381)
T ss_dssp HTCEECCCCSCSSCCCHHHHHHHHHHTTT-SCSCCCTTCCHHHHHHHHHHHT------SCGG-GEEEESSHHHHHHHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHHH-hcCCCCCCCCHHHHHHHHHhcC------CChh-hEEEcCChHHHHHHHHH
Confidence 47899999999988899999999998876 5679888899999999999975 5667 79999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcC--CCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLR--PPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~--~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
+++++||+|++++|+|+.+...++..|++++.++.+ ++++.+|++.+++++++++++|++++|+||||.+++.+++++
T Consensus 97 ~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~ 176 (381)
T 1v2d_A 97 SLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEA 176 (381)
T ss_dssp HHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred HhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHH
Confidence 999999999999999999999999999999999987 446889999999999888999999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccC
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA 346 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~ 346 (434)
|+++|++||+++|+||+|.++.++....++..+ ..++++++.|+||.+|++|+|+||+++++++++.++.......++
T Consensus 177 i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~--~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~ 254 (381)
T 1v2d_A 177 IARLARAHDLFLISDEVYDELYYGERPRRLREF--APERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFS 254 (381)
T ss_dssp HHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH--CTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHHHTSS
T ss_pred HHHHHHHcCCEEEEEcCccccccCCCCCCHHHh--cCCCEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHHhhcccC
Confidence 999999999999999999998873233344433 357889999999999999999999999999999988777666788
Q ss_pred CchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcC
Q 013883 347 TSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVG 424 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~G 424 (434)
.+.+.|.++..+|+.. ++++++++++++++++.+.+.|++.|+++..+++++|+|+++... + +.++++++|
T Consensus 255 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~------~-~~~~l~~~g 327 (381)
T 1v2d_A 255 APTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGW------D-AFRLVEEAR 327 (381)
T ss_dssp CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTTC------C-HHHHHHHTC
T ss_pred CCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCcceEEEEecChH------h-HHHHHHhCC
Confidence 8999999999999854 567888999999999999999999999998888899999987532 1 455567779
Q ss_pred eEEECCCCCC
Q 013883 425 VVAIPTSVFY 434 (434)
Q Consensus 425 V~v~pG~~F~ 434 (434)
|.+.||+.|+
T Consensus 328 i~v~~g~~~~ 337 (381)
T 1v2d_A 328 VALIPASAFY 337 (381)
T ss_dssp EECEEGGGGC
T ss_pred EEEecchHhC
Confidence 9999997663
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-45 Score=358.16 Aligned_cols=311 Identities=20% Similarity=0.306 Sum_probs=273.6
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.|||+.|.+++++++.+.+++.+.+ .....|++..|..+||+++++++.+.+|..++++ +|++|+|+++++..++.+
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~-~i~~t~g~~~al~~~~~~ 101 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHT-HSLNIYPKSAFEESLRAAQRGFFKRRFKIELKEN-ELISTLGSREVLFNFPSF 101 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTG-GGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGG-GEEEESSSHHHHHHHHHH
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhh-hhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHH-HEEECcCcHHHHHHHHHH
Confidence 78999999999999999999888777 3457899988999999999999998889877888 899999999999999999
Q ss_pred ccCC--CCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 190 LINP--GDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 190 l~~~--gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
++++ ||+|++++|+|.++...++..|++++.++++++ .++++ .+++++.+++++|++++||||||.+++.+++++|
T Consensus 102 ~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~-~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i 179 (376)
T 3ezs_A 102 VLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKE-NDFTP-SLNEKELQEVDLVILNSPNNPTGRTLSLEELISW 179 (376)
T ss_dssp HTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGG-GTSCC-CCCHHHHHHCSEEEECSSCTTTCCCCCHHHHHHH
T ss_pred HcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCC-CCcch-hHHhhhccCCCEEEEcCCCCCcCCCCCHHHHHHH
Confidence 9999 999999999999999999999999999999863 23343 5666676789999999999999999999999999
Q ss_pred HHHHHHcCcEEEEcCcCCccccCCCCccccCCCC-----CCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhc
Q 013883 268 ASLCIENDVLVFSDEVYDKLAFEMDHISIASLPG-----MYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSF 342 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~-----~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~ 342 (434)
+++|++||+++|+||+|.++.+++...++..... ..++++++.||||.+|++|+|+||+++++++++.+......
T Consensus 180 ~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 259 (376)
T 3ezs_A 180 VKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFRAY 259 (376)
T ss_dssp HHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHTT
T ss_pred HHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeCHHHHHHHHHHHhh
Confidence 9999999999999999999988775444433211 35789999999999999999999999999999999988877
Q ss_pred cccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHh
Q 013883 343 LTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKE 422 (434)
Q Consensus 343 ~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 422 (434)
.+++.+.+.|.++..+|++ .+++++++++++++++.+.+.|+ ++. .+++++|+|+++. +..+++++|+++
T Consensus 260 ~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~--~~~--~~~~~~~~~~~~~-----~~~~~~~~l~~~ 329 (376)
T 3ezs_A 260 LGYTSANAIQKASEAAWLD-DRHAEFFRNIYANNLKLARKIFK--NTL--IYPYSFYVYLPVQ-----NGENFAKTLYQN 329 (376)
T ss_dssp TCCCCCHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHST--TCC--CCSBSSEEEEECS-----CHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHhc--CCC--CCCcceEEEEECC-----CHHHHHHHHHHh
Confidence 7889999999999999997 55789999999999999999998 665 6788889999874 477899999876
Q ss_pred cCeEEECCCCCC
Q 013883 423 VGVVAIPTSVFY 434 (434)
Q Consensus 423 ~GV~v~pG~~F~ 434 (434)
+||.+.||+.|+
T Consensus 330 ~gi~v~~g~~~~ 341 (376)
T 3ezs_A 330 EGIITLPALYLG 341 (376)
T ss_dssp HCCBCEEGGGGC
T ss_pred CCEEEeCcHHhC
Confidence 799999998774
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-44 Score=359.17 Aligned_cols=314 Identities=22% Similarity=0.350 Sum_probs=270.8
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHc-----CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRD-----GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~-----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
.++|+|+.|+++++.++.+.+++.+++.+ +...|.+..|..+|++++++++.+ +..++++ +|++++|+++++
T Consensus 56 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~~~~~~~-~i~~t~G~~~al 132 (432)
T 3ei9_A 56 AQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG--GLGIGDD-DVFVSDGAKCDI 132 (432)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHT--TTTCCGG-GEEEESCHHHHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHc--cCCCCcc-eEEECCChHHHH
Confidence 47899999999999999999999998873 446798888999999999999974 5556777 899999999999
Q ss_pred HHHHHHccCCCCeEEEcCCCchhHHHHHHHcCC------------EEEEEEcCCC-CCCCCHHHHHhhcccCCcEEEecC
Q 013883 184 AATILGLINPGDEVILFAPFYDSYEATLSMAGA------------KIKCITLRPP-DFAIPIEELKSTISKNTRAILMNT 250 (434)
Q Consensus 184 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~------------~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~i~~~~ 250 (434)
.+ +..++++||.|++++|+|+++...+...|. +++.++++++ ++..|++. .+++++|++++
T Consensus 133 ~~-l~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~v~l~~ 206 (432)
T 3ei9_A 133 SR-LQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----VGRTDIIFFCS 206 (432)
T ss_dssp HH-HHHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----CCCCSEEEEES
T ss_pred HH-HHHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----CCCCCEEEEeC
Confidence 97 577889999999999999999999988884 6788888752 45556443 35789999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeCh
Q 013883 251 PHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP 330 (434)
Q Consensus 251 p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~ 330 (434)
||||||.+++.+++++|+++|++||++||+||+|.++.+++...++..+.+..++++++.||||.+|++|+|+||+++++
T Consensus 207 p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~ 286 (432)
T 3ei9_A 207 PNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPK 286 (432)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEECh
Confidence 99999999999999999999999999999999999998887666666665556789999999999999999999999998
Q ss_pred hh--------HHHHHHHhhccccCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEe
Q 013883 331 HL--------TWGVRQAHSFLTFATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVV 401 (434)
Q Consensus 331 ~~--------~~~l~~~~~~~~~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 401 (434)
++ ++.+........++++.++|.++..+|.+ ..+++++++++++++++.+.+.|+++|+.+.++++++|+|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 366 (432)
T 3ei9_A 287 KLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYGGKNAPYVW 366 (432)
T ss_dssp TCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECSSSSEEE
T ss_pred HHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEE
Confidence 88 77787776666677899999999988864 3467899999999999999999999999998888888999
Q ss_pred eecCCCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 402 VDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 402 ~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+++. + .++.+++.+|++++||.+.||+.|+
T Consensus 367 ~~~~--~-~~~~~~~~~ll~~~gv~v~~g~~f~ 396 (432)
T 3ei9_A 367 VHFP--N-QSSWDVFAEILEKTHVVTTPGSGFG 396 (432)
T ss_dssp EECT--T-SCHHHHHHHHHHHHCEECEEGGGGC
T ss_pred EECC--C-CCHHHHHHHHHHHCCEEEeCchHhC
Confidence 9985 2 2577899999988899999998774
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-44 Score=358.53 Aligned_cols=317 Identities=23% Similarity=0.294 Sum_probs=262.7
Q ss_pred CCeeEeCCCCCCCCCcHH--HHHHH---------HHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCC-------C
Q 013883 109 HGAINLGQGFPNFDGPDF--VKDAA---------IQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDP-------E 170 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~--v~~~~---------~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-------~ 170 (434)
++.|+|+.|.|+....|. ...++ .+... ....|.+..|.++||+++++++.+.+|...++ +
T Consensus 31 ~~~i~l~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~ 109 (425)
T 2r2n_A 31 KSMISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEMMK-RALQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQM 109 (425)
T ss_dssp TTCEECCCCCCCGGGCSEEEEEEEETTSCCEEECHHHHH-HHTSCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCE
T ss_pred CCeEEcCCcCCCchhCCHHHHHHHHhhcccccccccchh-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcC
Confidence 478999999998654331 00000 11111 12579999999999999999999888987643 5
Q ss_pred CcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc----------
Q 013883 171 KEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS---------- 240 (434)
Q Consensus 171 ~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~---------- 240 (434)
+|++|+|+++++.+++.+++++||+|++++|+|+++...++..|++++.+|+++ .++|++.|+++++
T Consensus 110 -~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~--~~~d~~~l~~~l~~~~~~~~~~~ 186 (425)
T 2r2n_A 110 -DLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIINVASDE--SGIVPDSLRDILSRWKPEDAKNP 186 (425)
T ss_dssp -EEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHGGGTCEEEEECEET--TEECHHHHHHHHTTSCSTTSSST
T ss_pred -cEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeCcCC--CCCCHHHHHHHHHhhhccccccc
Confidence 899999999999999999999999999999999999999999999999999874 3589999999886
Q ss_pred --cCCcEEEe-cCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhh
Q 013883 241 --KNTRAILM-NTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTF 316 (434)
Q Consensus 241 --~~~~~i~~-~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~ 316 (434)
+++++|++ ++||||||.+++.+++++|+++|++||++||+||+|.++.|++. ..++..+. ..++++++.||||.+
T Consensus 187 ~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~i~~~s~SK~~ 265 (425)
T 2r2n_A 187 QKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMD-VDGRVIRADSFSKII 265 (425)
T ss_dssp TSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGC-TTSCEEEEEESTTTT
T ss_pred cCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccC-CCCCEEEEccchhhc
Confidence 35788866 68999999999999999999999999999999999999988764 34555554 246899999999999
Q ss_pred ccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC-----hHHHHHHHHHHHHHHHHHHHHhhhC--CC
Q 013883 317 SLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP-----ETYYEELKRDYSAKKAILVEGLNAV--GF 389 (434)
Q Consensus 317 g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~--g~ 389 (434)
+ +|+|+||+++++++++.+...+....++.+.+.|.++..+|++. .++++++++.++++++.+.+.|++. |+
T Consensus 266 ~-~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 344 (425)
T 2r2n_A 266 S-SGLRIGFLTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGL 344 (425)
T ss_dssp C-STTCCEEEEEEHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred c-CccceEEEecCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 9 99999999999999999988887778899999999999999862 3678889999999999999999874 76
Q ss_pred -EeecCCeeEEEeeecCCCCCCCHHHH-HHHHHHhcCeEEECCCCCC
Q 013883 390 -KVFPSSGTYFVVVDHTPFGHETDIAF-CEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 390 -~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ll~~~GV~v~pG~~F~ 434 (434)
.+..+++++|+|+++... . ++.++ .+.| .++||.+.||+.|+
T Consensus 345 ~~~~~p~~g~~~~~~~~~~-~-~~~~~~~~~l-~~~gv~v~pg~~f~ 388 (425)
T 2r2n_A 345 AEWHVPAAGMFLWIKVKGI-N-DVKELIEEKA-VKMGVLMLPGNAFY 388 (425)
T ss_dssp EEECCCSBSSEEEEEETTC-S-CCHHHHHTHH-HHTTEECEEGGGGS
T ss_pred eEEeCCCceEEEEEEeCCC-C-CHHHHHHHHH-HHCCcEEechhhhc
Confidence 466788999999998542 2 34454 4545 56799999998774
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=351.27 Aligned_cols=321 Identities=18% Similarity=0.326 Sum_probs=281.3
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
.+.|+|+.|.+++++++.+.+++.+++.+..+.|.+ +..++++++++++.+.+|..++++ +|++++|+++++.+++.
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~-~v~~~~g~~~a~~~~~~ 108 (391)
T 4dq6_A 32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEIYGYTT--RPDSYNESIVNWLYRRHNWKIKSE-WLIYSPGVIPAISLLIN 108 (391)
T ss_dssp SCSEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCBC--CCHHHHHHHHHHHHHHHCCCCCGG-GEEEESCHHHHHHHHHH
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHHHHHHhCCCCcHH-HeEEcCChHHHHHHHHH
Confidence 578999999999999999999999998776667776 568999999999999999888888 89999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcC-C--CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLR-P--PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~-~--~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
+++++||+|+++.|+|.++...++..|++++.+|++ + .++.+|++.+++++++ +++|++++|+||||.+++.++++
T Consensus 109 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~ 187 (391)
T 4dq6_A 109 ELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDELK 187 (391)
T ss_dssp HHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHHH
T ss_pred HhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHHH
Confidence 999999999999999999999999999999999987 2 3456899999999988 99999999999999999999999
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCC-CCceEEEccCChhhccccceeeeEEeCh-hhHHHHHHHhhc
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGM-YERTVTMNSLGKTFSLTGWKIGWAIAPP-HLTWGVRQAHSF 342 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~-~~~~i~i~S~SK~~g~~G~R~G~~~~~~-~~~~~l~~~~~~ 342 (434)
+|+++|++||+++|+||+|.++.+++. ..++..+... .++++++.|+||.+|++|+|+||+++++ ++++.++.....
T Consensus 188 ~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~ 267 (391)
T 4dq6_A 188 KLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTR 267 (391)
T ss_dssp HHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHh
Confidence 999999999999999999999988764 3344444321 3688999999999999999999999986 888888776543
Q ss_pred -cccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh-C-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHH
Q 013883 343 -LTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA-V-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYL 419 (434)
Q Consensus 343 -~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 419 (434)
..++.+.+.+.++..+|+..++++++++++++++++.+.+.|++ + |+.+.++++++++|++++..+. +..+++++|
T Consensus 268 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 346 (391)
T 4dq6_A 268 IDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSALGL-SDEELESIL 346 (391)
T ss_dssp TTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGGCC-CHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhcCC-CHHHHHHHH
Confidence 34578889999999999877788999999999999999999987 3 8999999999999998754333 578899999
Q ss_pred HHhcCeEEECCCCCC
Q 013883 420 IKEVGVVAIPTSVFY 434 (434)
Q Consensus 420 l~~~GV~v~pG~~F~ 434 (434)
++++||.+.||+.|+
T Consensus 347 ~~~~gi~v~~g~~~~ 361 (391)
T 4dq6_A 347 VQKGKVALNQGNSFG 361 (391)
T ss_dssp HHTTCEECEEGGGGC
T ss_pred HHhCCEEeeCchhhC
Confidence 877799999998763
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-44 Score=355.20 Aligned_cols=320 Identities=19% Similarity=0.307 Sum_probs=277.6
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.|||+.|.+++++++.+.+++.+++......|++. ..+||+++++++.+.+|.+++++ +|++|+|+++++.+++.+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~-~v~~t~g~~~a~~~~~~~ 108 (399)
T 1c7n_A 32 EVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQTD-WIINTAGVVPAVFNAVRE 108 (399)
T ss_dssp TCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCCGG-GEEEESSHHHHHHHHHHH
T ss_pred CceeeeecCCCCCCCHHHHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCChh-hEEEcCCHHHHHHHHHHH
Confidence 789999999988889999999999887666778775 79999999999998888777787 899999999999999999
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-C-CCCCCHHHHHhhcc-cCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-P-DFAIPIEELKSTIS-KNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~-~~~~d~~~l~~~i~-~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
++++||+|++++|+|+++...+...|++++.+|+++ + ++.+|++.++++++ +++++|++++||||||.+++.+++++
T Consensus 109 l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~ 188 (399)
T 1c7n_A 109 FTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQK 188 (399)
T ss_dssp HCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred hcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHH
Confidence 999999999999999999999999999999998863 2 24589999999998 68899999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCC-CCCceEEEccCChhhccccceeeeEEeC-hhhHHHHHHHhhcc
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPG-MYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFL 343 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~-~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~ 343 (434)
|+++|++||+++|+||+|.++.+++. ..++..+.. ..++++++.|+||.+|++|+|+||++++ +++++.++......
T Consensus 189 i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~ 268 (399)
T 1c7n_A 189 IKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDAT 268 (399)
T ss_dssp HHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhc
Confidence 99999999999999999999988663 334444421 1467899999999999999999999997 57888888776655
Q ss_pred cc-CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh-C-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHH
Q 013883 344 TF-ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA-V-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLI 420 (434)
Q Consensus 344 ~~-~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll 420 (434)
.+ +.+.+.|.++..+|+..++++++++++++++++.+.+.|++ + |+.+.++++++++|+++...+. +..+++++|+
T Consensus 269 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ 347 (399)
T 1c7n_A 269 SGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKM-DHKAMEEFMI 347 (399)
T ss_dssp TCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGCC-CHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEcccCCC-CHHHHHHHHH
Confidence 44 67888999999999876778999999999999999999988 5 8888889999999998754322 4778999888
Q ss_pred HhcCeEEECCCCC
Q 013883 421 KEVGVVAIPTSVF 433 (434)
Q Consensus 421 ~~~GV~v~pG~~F 433 (434)
+++||.+.||+.|
T Consensus 348 ~~~gi~v~~g~~~ 360 (399)
T 1c7n_A 348 HKAQIFFDEGYIF 360 (399)
T ss_dssp HTTCCCCEEGGGG
T ss_pred HhCCEEEeCcccc
Confidence 6779999999766
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-45 Score=364.94 Aligned_cols=331 Identities=16% Similarity=0.177 Sum_probs=268.8
Q ss_pred CCchHHHHHhhhccccHHHHHHHHhhcCCeeEeCCCCC-CCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHH
Q 013883 82 LQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFP-NFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFK 160 (434)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p-~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~ 160 (434)
.+++.+.+++++... +++|||+.|.| ++++++.+.+++.++.......|.+..|.++||+++++++.
T Consensus 26 ~~i~~~~~~~~~~~~------------~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~~ 93 (409)
T 4eu1_A 26 DPILGLGQDFRMDPA------------KRKVNLSIGVYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLCF 93 (409)
T ss_dssp -CHHHHHHHHHHCCC------------SSCEECCCSSCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhhCCC------------cCceeeeeeEEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHHc
Confidence 344666666655433 37899999987 88888888888877754456789999999999999999985
Q ss_pred hhcCCCCCCCCcEE--EcCChHHHHHHH---HHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcC-CCCCCCCHHH
Q 013883 161 KDSGLEVDPEKEVT--VTSGCTEAIAAT---ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLR-PPDFAIPIEE 234 (434)
Q Consensus 161 ~~~g~~~~~~~~i~--~t~G~~~ai~~~---~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~-~~~~~~d~~~ 234 (434)
+..+..++++ +|. .+.|+++++.++ +..++++||+|++++|+|.++...++..|++++.+|++ ++++++|++.
T Consensus 94 ~~~~~~~~~~-~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 172 (409)
T 4eu1_A 94 GPTCAALRDG-RIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAG 172 (409)
T ss_dssp CSSCHHHHTT-CEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHH
T ss_pred CCCchhhccC-ceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHH
Confidence 4333223355 674 488888888765 44567899999999999999999999999999999984 3568899999
Q ss_pred HHhhccc---CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC---CCccccCCCCCCCceEE
Q 013883 235 LKSTISK---NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM---DHISIASLPGMYERTVT 308 (434)
Q Consensus 235 l~~~i~~---~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~---~~~~~~~~~~~~~~~i~ 308 (434)
+++++++ +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++ +...+..+.+..+++++
T Consensus 173 l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (409)
T 4eu1_A 173 MLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIV 252 (409)
T ss_dssp HHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEE
T ss_pred HHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEE
Confidence 9999962 45666779999999999999999999999999999999999999998876 23344444344678999
Q ss_pred EccCChhhccccceeeeE---EeChh----hHHHHHHHhhccccCCchHHHHHHHHHHhCC------hHHHHHHHHHHHH
Q 013883 309 MNSLGKTFSLTGWKIGWA---IAPPH----LTWGVRQAHSFLTFATSTPMQWAATAALRAP------ETYYEELKRDYSA 375 (434)
Q Consensus 309 i~S~SK~~g~~G~R~G~~---~~~~~----~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~------~~~~~~~~~~~~~ 375 (434)
++||||.+|++|+|+||+ +.+++ +++.++...+...++++.+.|.++..+|++. .++++++++++++
T Consensus 253 ~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (409)
T 4eu1_A 253 AQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAE 332 (409)
T ss_dssp EEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999996 45666 6677777666667788899999999999975 3447788999999
Q ss_pred HHHHHHHHhhhCC----CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 376 KKAILVEGLNAVG----FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 376 ~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
+++.+.+.|++.| +.+.++++++|+|+++ +.+++.+|++++||.+.||..
T Consensus 333 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ll~~~gv~v~p~~R 386 (409)
T 4eu1_A 333 VRKRLVSELKACGSVHDWSHIERQVGMMAYTGL-------TREQVELLRSEYHIYMTLNGR 386 (409)
T ss_dssp HHHHHHHHHHHTTCCSCCHHHHHSCSSEEECCC-------CHHHHHHHHHHHCEECCTTCE
T ss_pred HHHHHHHHHHhcCCCCCcceecCCceEEEEeCC-------CHHHHHHHHHcCCEEEcCCCE
Confidence 9999999999987 7888899999999765 236788888888999999853
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-44 Score=359.53 Aligned_cols=333 Identities=20% Similarity=0.316 Sum_probs=280.9
Q ss_pred hccccHHHHHHHHhhcCCeeEeCCCCCCCC--CcHHHHHHHHHHHHcC---CCCCCCCCCcHHHHHHHHHHHHhhcCCC-
Q 013883 93 KFKTTIFTQMSMLAIKHGAINLGQGFPNFD--GPDFVKDAAIQAIRDG---KNQYARGHGVPEFNSAIASRFKKDSGLE- 166 (434)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~--~~~~v~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~- 166 (434)
..+.+.+.++.....+++.|||+.|.|+.. +++.+.+++.++++.. ...|.+..|..+||+++++++.+.+|.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~ 106 (425)
T 1vp4_A 27 NMKSSIIREILKFAADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITG 106 (425)
T ss_dssp TCCCCCHHHHTTTTTSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCS
T ss_pred cCCCcHHHHHHHhccCCCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCC
Confidence 333333444444444568899999987654 6778899988887653 3679888899999999999998777876
Q ss_pred CCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-----
Q 013883 167 VDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK----- 241 (434)
Q Consensus 167 ~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~----- 241 (434)
++++ +|++|+|+++++.+++.+++++||+|++++|+|+++...++..|++++.+|.++ + ++|++.+++++++
T Consensus 107 ~~~~-~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~-~~d~~~l~~~l~~~~~~~ 183 (425)
T 1vp4_A 107 LDED-NLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLED-D-GMDLNVLERKLSEFDKNG 183 (425)
T ss_dssp CCGG-GEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-T-EECHHHHHHHHHHHHHTT
T ss_pred CCcc-cEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCC-C-CCCHHHHHHHHHhhhhcc
Confidence 7777 899999999999999999999999999999999999999999999999999875 3 4899999998876
Q ss_pred ---CCcEE-EecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCC-ccccCCCCCCCceEEEccCChhh
Q 013883 242 ---NTRAI-LMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH-ISIASLPGMYERTVTMNSLGKTF 316 (434)
Q Consensus 242 ---~~~~i-~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~-~~~~~~~~~~~~~i~i~S~SK~~ 316 (434)
++++| ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.. .++..+. ..++++++.||||.+
T Consensus 184 ~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~i~~~s~sK~~ 262 (425)
T 1vp4_A 184 KIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG-GPERVVLLNTFSKVL 262 (425)
T ss_dssp CGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH-CTTTEEEEEESTTTT
T ss_pred cCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhC-CCCCEEEEecccccc
Confidence 68887 47899999999999999999999999999999999999999886643 3443332 246789999999999
Q ss_pred ccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhC-----CC
Q 013883 317 SLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAV-----GF 389 (434)
Q Consensus 317 g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-----g~ 389 (434)
| +|+|+||+++++++++.+.......+++.+.+.|.++..+|++. ++++++++++++++++.+.+.|++. |+
T Consensus 263 ~-~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~ 341 (425)
T 1vp4_A 263 A-PGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGV 341 (425)
T ss_dssp C-GGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTC
T ss_pred c-cccceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCce
Confidence 9 99999999999999998887776667788999999999999875 5778889999999999999999875 68
Q ss_pred EeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 390 KVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
.+..+++++|+|++++. +. +..+++++|+++ ||.+.||+.|
T Consensus 342 ~~~~~~~g~~~~~~~~~-~~-~~~~l~~~l~~~-gi~v~~g~~f 382 (425)
T 1vp4_A 342 KWVKSEGGLFIWLTLPE-GF-DTWEMFEYAKRK-KVFYVPGRVF 382 (425)
T ss_dssp EECCCSBSSEEEEECCT-TC-CTTTTHHHHHHH-TEECEEGGGG
T ss_pred EEecCCccEEEEEEcCC-CC-CHHHHHHHHHHC-CCEEECchhh
Confidence 88888889999998753 22 356788888877 9999999876
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=355.53 Aligned_cols=317 Identities=21% Similarity=0.273 Sum_probs=264.7
Q ss_pred cCCeeEeCCCCC-----CCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 108 KHGAINLGQGFP-----NFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 108 ~~~~i~l~~g~p-----~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+.++|||+.|.| ++++++.+.+++.+........|.+..|.++||+++++++.+.++.+. ++ +|++|+|++++
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~-~~-~i~~t~g~~~a 114 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEG-HI-RSIATAGGTGG 114 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSS-EE-EEEEESHHHHH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccc-cc-cEEECCchHHH
Confidence 347899999977 777888888877665443446799999999999999999987776542 33 79999999999
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc----CCc-EEEecCC-CCCcc
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK----NTR-AILMNTP-HNPTG 256 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~----~~~-~i~~~~p-~NPTG 256 (434)
+..++.+++++||+|++++|+|.+|...+...|++++.+|++++++++|++.+++++++ +++ ++++++| |||||
T Consensus 115 l~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG 194 (418)
T 3rq1_A 115 IHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTG 194 (418)
T ss_dssp HHHHHHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTC
T ss_pred HHHHHHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCC
Confidence 99999999999999999999999999999999999999999765689999999999975 666 7788899 99999
Q ss_pred cCCCHHHHHHHHHHHH------HcCcEEEEcCcCCccccCCCC-ccc-cCCCCCCCc--eEEEccCChhhccccceeeeE
Q 013883 257 KMFTREELNVIASLCI------ENDVLVFSDEVYDKLAFEMDH-ISI-ASLPGMYER--TVTMNSLGKTFSLTGWKIGWA 326 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~------~~~~~iI~Deay~~~~~~~~~-~~~-~~~~~~~~~--~i~i~S~SK~~g~~G~R~G~~ 326 (434)
.+++.+++++|+++|+ +||+++|+||+|.+|.+++.. ..+ ....+..++ +++++||||.+|++|+|+||+
T Consensus 195 ~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~ 274 (418)
T 3rq1_A 195 YSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAM 274 (418)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEE
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEE
Confidence 9999999999999999 899999999999998876532 222 223333445 588999999999999999999
Q ss_pred Ee---ChhhHHHHHHHhhcc----ccCCchHHHHHHHHHHhCCh---HH---HHHHHHHHHHHHHHHHHHhhhCCCEeec
Q 013883 327 IA---PPHLTWGVRQAHSFL----TFATSTPMQWAATAALRAPE---TY---YEELKRDYSAKKAILVEGLNAVGFKVFP 393 (434)
Q Consensus 327 ~~---~~~~~~~l~~~~~~~----~~~~~~~~q~a~~~~L~~~~---~~---~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 393 (434)
++ ++++++.+...+... ..+++.++|.++..+|++.+ .| +++++++++++++.+.+.|+++|+++.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 354 (418)
T 3rq1_A 275 IGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPMLP 354 (418)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99 899998887765432 24678899999999998742 23 3466788999999999999988999999
Q ss_pred CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 394 SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
++++||+|+++. +..++++.| +++||.++||..
T Consensus 355 ~~~~~~~~~~~~-----~~~~~~~~l-~~~gi~v~~g~~ 387 (418)
T 3rq1_A 355 YRGGFFITIPTD-----SANAICEEL-KKEHIYVIALAN 387 (418)
T ss_dssp CCSSSEEEEECT-----THHHHHHHH-HHTTEECEECSS
T ss_pred CCceEEEEcCCC-----CHHHHHHHH-HhCCEEEecCCC
Confidence 999999998762 477888766 566999999864
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-43 Score=347.82 Aligned_cols=318 Identities=20% Similarity=0.293 Sum_probs=272.7
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHH-HHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPE-FNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~-lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
+.|||+.|.+++++++.+.+++.+++......|++. ..+ ||+++++++.+.+|..++++ +|++|+|+++++.+++.
T Consensus 29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~-~v~~t~g~~~al~~~~~ 105 (390)
T 1d2f_A 29 DLLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQ-TVVYGPSVIYMVSELIR 105 (390)
T ss_dssp -CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGG-GEEEESCHHHHHHHHHH
T ss_pred CeeEeeecCCCCCCCHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHH-HEEEcCCHHHHHHHHHH
Confidence 689999999888889999999999887656778775 678 99999999998889888888 89999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC--CCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP--DFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~--~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
+++++||+|+++.|+|+++...++..|++++.+|++++ ++.+|++.+++++++ ++++|++++||||||.+++.++++
T Consensus 106 ~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~ 185 (390)
T 1d2f_A 106 QWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELE 185 (390)
T ss_dssp HSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHH
T ss_pred HhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHH
Confidence 99999999999999999999999999999999998753 346899999999986 789999999999999999999999
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeC-hhhHHHHHHHhh-c
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHS-F 342 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~-~ 342 (434)
+|+++|++||+++|+||+|.++.+++. ..++..+.... ... +.||||.+|++|+|+||++++ +++++.++.... .
T Consensus 186 ~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~-~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~ 263 (390)
T 1d2f_A 186 IMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGD-WAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGR 263 (390)
T ss_dssp HHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSS-EEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhh-Hhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHhhh
Confidence 999999999999999999999988653 33444443211 023 999999999999999999985 788888877665 4
Q ss_pred ccc-CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh-C-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHH
Q 013883 343 LTF-ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA-V-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYL 419 (434)
Q Consensus 343 ~~~-~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 419 (434)
.++ +.+.+.+.++..+|+..++++++++++++++++.+.+.|++ + |+.+.++++++++|+++...+. +..+++++|
T Consensus 264 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l 342 (390)
T 1d2f_A 264 DGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNI-DDNALQKAL 342 (390)
T ss_dssp SCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGCC-CHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCccEEEEEEccccCC-CHHHHHHHH
Confidence 454 77888899998989876778999999999999999999988 5 8888889999999998754322 477899989
Q ss_pred HHhcCeEEECCCCC
Q 013883 420 IKEVGVVAIPTSVF 433 (434)
Q Consensus 420 l~~~GV~v~pG~~F 433 (434)
++++||.+.||+.|
T Consensus 343 ~~~~gi~v~~g~~f 356 (390)
T 1d2f_A 343 IEQEKVAIMPGYTY 356 (390)
T ss_dssp HHTTCEECEEGGGG
T ss_pred HHHcCEEeeCcccc
Confidence 86779999999866
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-43 Score=352.47 Aligned_cols=322 Identities=25% Similarity=0.346 Sum_probs=284.4
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+.+.|||+.|.++++.++.+.+++.+++.+..+.|.+.. .++++++++++.+.+|.+++++ +|++++|+++++..++
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~--~~l~~~l~~~l~~~~g~~~~~~-~v~~~~g~~ea~~~a~ 136 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGREHIFGYNYFN--DDLYQAVIDWERKEHDYAVVKE-DILFIDGVVPAISIAL 136 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHHCCSSCBCCC--HHHHHHHHHHHHHHHCCCCCGG-GEEEESCHHHHHHHHH
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhcCCcCCCCCC--HHHHHHHHHHHHHHhCCCCCHH-HEEEcCCHHHHHHHHH
Confidence 448899999999999999999999999887777787753 8999999999999999888888 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcC--CCCCCCCHHHHHhhcc-cCCcEEEecCCCCCcccCCCHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLR--PPDFAIPIEELKSTIS-KNTRAILMNTPHNPTGKMFTREEL 264 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~--~~~~~~d~~~l~~~i~-~~~~~i~~~~p~NPTG~~~~~e~l 264 (434)
+.++++||+|+++.|+|+++...+...|.+++.+|++ +.++.+|++.++++++ +++++|++++||||||.+++.+++
T Consensus 137 ~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l 216 (421)
T 3l8a_A 137 QAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDL 216 (421)
T ss_dssp HHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHH
T ss_pred HHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHH
Confidence 9999999999999999999999999999999999986 3346789999999998 689999999999999999999999
Q ss_pred HHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCC-CCCceEEEccCChhhccccceeeeEEeC-hhhHHHHHHHhh
Q 013883 265 NVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPG-MYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHS 341 (434)
Q Consensus 265 ~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~-~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~ 341 (434)
++|+++|++||+++|+||+|.++.+++. ..++..+.. ..++++.+.|+||.+|++|+|+||++++ +++.+.+.....
T Consensus 217 ~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~ 296 (421)
T 3l8a_A 217 IKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQL 296 (421)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHH
Confidence 9999999999999999999999998764 344555532 3578899999999999999999999998 889888877653
Q ss_pred -ccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHH
Q 013883 342 -FLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYL 419 (434)
Q Consensus 342 -~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 419 (434)
...++.+.+++.++.++|+..++++++++++++++++.+.+.|++. ++.+.+++++|+.|+++...+. +..+++++|
T Consensus 297 ~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~~-~~~~l~~~l 375 (421)
T 3l8a_A 297 ANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYAI-AQPQLSEKL 375 (421)
T ss_dssp HTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSEEEEECGGGTC-CTTHHHHHH
T ss_pred hcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEEEEEeccccCC-CHHHHHHHH
Confidence 3455788999999999998778889999999999999999999985 8999999999999998865333 466899999
Q ss_pred HHhcCeEEECCCCC
Q 013883 420 IKEVGVVAIPTSVF 433 (434)
Q Consensus 420 l~~~GV~v~pG~~F 433 (434)
++++||.+.||+.|
T Consensus 376 ~~~~gi~v~~g~~f 389 (421)
T 3l8a_A 376 QNEAKVVLNDGAHF 389 (421)
T ss_dssp HHTTCEECEEGGGG
T ss_pred HHhCCEEEECchhh
Confidence 88889999998766
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-44 Score=360.68 Aligned_cols=317 Identities=18% Similarity=0.251 Sum_probs=272.8
Q ss_pred cCCeeEeCCCCC-CCCCcHHH--HHHHHHHHHc-CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCc---EEEcCChH
Q 013883 108 KHGAINLGQGFP-NFDGPDFV--KDAAIQAIRD-GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKE---VTVTSGCT 180 (434)
Q Consensus 108 ~~~~i~l~~g~p-~~~~~~~v--~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~---i~~t~G~~ 180 (434)
.++.|||+.|.| +++.++.+ .+++.+++.. ....|++..|..+||+++++++.+.+ ..++++ + |++|+|++
T Consensus 46 ~~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~-~~~~i~~t~g~~ 123 (430)
T 2x5f_A 46 KSTTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSID-NMSRPIVTNALT 123 (430)
T ss_dssp TTCSEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGG-GBCCCEEESHHH
T ss_pred CCCcEEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccC-cccCCC-ccceEEEcCCch
Confidence 347899999999 77776666 6655555543 45789998899999999999998764 667777 8 99999999
Q ss_pred HHHHHHHHHccCCCCeEEEcCCCchhHHHHHHH-cCCEEEEEEcCCCCCCCCHHHHHhhccc---CCcEEEecCCCCCcc
Q 013883 181 EAIAATILGLINPGDEVILFAPFYDSYEATLSM-AGAKIKCITLRPPDFAIPIEELKSTISK---NTRAILMNTPHNPTG 256 (434)
Q Consensus 181 ~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~G~~~~~v~~~~~~~~~d~~~l~~~i~~---~~~~i~~~~p~NPTG 256 (434)
+++.+++.+++++||+|++++|+|+++...+.. .|++++.++++++++++|++.+++++++ +++++++++||||||
T Consensus 124 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG 203 (430)
T 2x5f_A 124 HGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTG 203 (430)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTC
T ss_pred HHHHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCC
Confidence 999999999999999999999999999999999 9999999998764478999999999987 789999999999999
Q ss_pred cCCCHHHHHHHHHHHHH-----cCcEEEEcCcCCccccCCC-Ccccc-CCCCCCCc---eEEEccCChhhccccceeeeE
Q 013883 257 KMFTREELNVIASLCIE-----NDVLVFSDEVYDKLAFEMD-HISIA-SLPGMYER---TVTMNSLGKTFSLTGWKIGWA 326 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~-----~~~~iI~Deay~~~~~~~~-~~~~~-~~~~~~~~---~i~i~S~SK~~g~~G~R~G~~ 326 (434)
.+++.+++++|+++|++ ||+++|+||+|.++.+++. ..++. .+....++ ++++.||||.+|++|+|+||+
T Consensus 204 ~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~ 283 (430)
T 2x5f_A 204 YTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFM 283 (430)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEE
T ss_pred CcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEE
Confidence 99999999999999999 9999999999999988764 23433 44333567 899999999999999999999
Q ss_pred Ee---ChhhHHHHHHHhhc----cccCCchHHHHHHHHHHh-CChHHHHH---HHHHHHHHHHHHHHHhh----hCCCEe
Q 013883 327 IA---PPHLTWGVRQAHSF----LTFATSTPMQWAATAALR-APETYYEE---LKRDYSAKKAILVEGLN----AVGFKV 391 (434)
Q Consensus 327 ~~---~~~~~~~l~~~~~~----~~~~~~~~~q~a~~~~L~-~~~~~~~~---~~~~~~~~~~~l~~~L~----~~g~~~ 391 (434)
++ ++++++.+...... .+++.+.+.|.++..+|+ +. ++.++ ++++++++++.+.+.|+ +.|+.+
T Consensus 284 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~ 362 (430)
T 2x5f_A 284 TFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNK-QFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQA 362 (430)
T ss_dssp EEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEE
T ss_pred EEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcee
Confidence 99 99999988876655 678899999999999999 74 45555 89999999999999998 678998
Q ss_pred ecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 392 FPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
.++++++|+|+++. +. +..+++++|++++||.+.||
T Consensus 363 ~~~~~g~~~~~~~~--~~-~~~~~~~~l~~~~gi~v~~g 398 (430)
T 2x5f_A 363 YDFNSGYFMAIKVH--DV-DPEALRKHLIDKYSIGVIAL 398 (430)
T ss_dssp CCCCBSSEEEEEES--SS-CHHHHHHHHHHHHCEECEEC
T ss_pred eCCCceEEEEeCCC--CC-CHHHHHHHHHHhCCEEEecC
Confidence 89999999999885 32 57789999987579999997
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-44 Score=354.08 Aligned_cols=316 Identities=20% Similarity=0.217 Sum_probs=260.6
Q ss_pred CCeeEeCCC---CCCCCCc--HHHHHHHHH-HHHc-CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCC-cEEEcCChH
Q 013883 109 HGAINLGQG---FPNFDGP--DFVKDAAIQ-AIRD-GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEK-EVTVTSGCT 180 (434)
Q Consensus 109 ~~~i~l~~g---~p~~~~~--~~v~~~~~~-~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~-~i~~t~G~~ 180 (434)
+++|||+.| .|+.+++ +.+.+++.+ ++.+ ....|.+..|..++|+++++++.+.++..+++++ +|++|+|++
T Consensus 26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~ 105 (397)
T 3fsl_A 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS 105 (397)
T ss_dssp SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcH
Confidence 378999999 4554444 899999988 8766 4568999899999999999999865554334542 689999999
Q ss_pred HHHHHHH--HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcC-CCCCCCCHHHHHhhcc---cCCcEEEecCCCCC
Q 013883 181 EAIAATI--LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLR-PPDFAIPIEELKSTIS---KNTRAILMNTPHNP 254 (434)
Q Consensus 181 ~ai~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~---~~~~~i~~~~p~NP 254 (434)
+++.+++ .+++++||+|++++|+|.++...++..|++++.+++. ++++++|++.++++++ ++++++++++||||
T Consensus 106 ~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~np 185 (397)
T 3fsl_A 106 GALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNP 185 (397)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTT
T ss_pred HHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 9999994 4567999999999999999999999999999999984 3478899999999998 56788999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC--CCccccCCCCCCCceEEEccCChhhccccceeeeEEe---C
Q 013883 255 TGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM--DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA---P 329 (434)
Q Consensus 255 TG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~--~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~---~ 329 (434)
||.+++.+++++|+++|++||+++|+||+|.++.+++ ...++..+....+++++++||||.+|++|+|+||+++ +
T Consensus 186 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~ 265 (397)
T 3fsl_A 186 TGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCED 265 (397)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEECSS
T ss_pred CCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEecCC
Confidence 9999999999999999999999999999999998873 2334444444568899999999999999999999975 3
Q ss_pred hhhHHHH----HHHhhccccCCchHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHhhhC----CCEeecCC
Q 013883 330 PHLTWGV----RQAHSFLTFATSTPMQWAATAALRAP------ETYYEELKRDYSAKKAILVEGLNAV----GFKVFPSS 395 (434)
Q Consensus 330 ~~~~~~l----~~~~~~~~~~~~~~~q~a~~~~L~~~------~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~ 395 (434)
++.+..+ +...+....+++.+.|.++..+|.+. ++++++++++++++++.+.+.|++. |+.+.+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 345 (397)
T 3fsl_A 266 AEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQ 345 (397)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHC
T ss_pred HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecCC
Confidence 4555433 22223345667889999999999874 5678889999999999999999986 68888889
Q ss_pred eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 396 GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+++|+|+++ +. +++.++++++||.+.||.
T Consensus 346 ~~~~~~~~~------~~-~~~~~~l~~~gi~v~~g~ 374 (397)
T 3fsl_A 346 RGMFSYTGL------SA-AQVDRLREEFGVYLIASG 374 (397)
T ss_dssp CSSEEECCC------CH-HHHHHHHHTTCEECCTTC
T ss_pred ceEEEecCC------CH-HHHHHHHHhCCEEECCCC
Confidence 999999876 23 445666678899999985
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=361.99 Aligned_cols=309 Identities=21% Similarity=0.365 Sum_probs=253.9
Q ss_pred cHHHHHHHHHHHHc----CCCCCCCCCCcHHHHHHHHHHHHhhc-CCCCCCCCcEEEcCChHHHHHHHHHHccCCCC---
Q 013883 124 PDFVKDAAIQAIRD----GKNQYARGHGVPEFNSAIASRFKKDS-GLEVDPEKEVTVTSGCTEAIAATILGLINPGD--- 195 (434)
Q Consensus 124 ~~~v~~~~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~l~~~~-g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd--- 195 (434)
|..+.+++.+++.+ ....|++..|.++||+++++++.+.+ |.+++++ +|++|+|+++++..++.+++++||
T Consensus 103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~-~i~~t~G~~~ai~~~~~~l~~~gd~~~ 181 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPD-NIYLTTGASDGISTILKILVSGGGKSR 181 (498)
T ss_dssp CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGG-GEEEESSHHHHHHHHHHHHCCCCGGGS
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcc-cEEEcCCHHHHHHHHHHHHcCCCCCCC
Confidence 34444555666664 23679999999999999999999888 4888888 899999999999999999999875
Q ss_pred -eEEEcCCCchhHHHHHHHcCCEEEEEEcCCC-CCCCCHHHHHhhccc-----CCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 196 -EVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISK-----NTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 196 -~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~-----~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
+|+++.|+|+.|...+...|++++.++++++ +|++|++.|++++++ ++++|++++||||||.+++.+++++|+
T Consensus 182 d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~ 261 (498)
T 3ihj_A 182 TGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVI 261 (498)
T ss_dssp EEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred CEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHH
Confidence 9999999999999999999999999999863 689999999999977 589999999999999999999999999
Q ss_pred HHHHHcCcEEEEcCcCCccccCCC--CccccCCCC-------CCCceEEEccCChhh-ccccceeeeEE---eChhhHHH
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMD--HISIASLPG-------MYERTVTMNSLGKTF-SLTGWKIGWAI---APPHLTWG 335 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~--~~~~~~~~~-------~~~~~i~i~S~SK~~-g~~G~R~G~~~---~~~~~~~~ 335 (434)
++|++||++||+||+|..+.|++. ..++..+.. ...++++++||||.+ |++|+|+||++ .++++++.
T Consensus 262 ~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~ 341 (498)
T 3ihj_A 262 HFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQ 341 (498)
T ss_dssp HHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHH
T ss_pred HHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHH
Confidence 999999999999999999998753 334433311 123579999999999 89999999998 68999998
Q ss_pred HHHHhhccccCCchHHHHHHHHHHhCC-------hHH---HHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeec
Q 013883 336 VRQAHSFLTFATSTPMQWAATAALRAP-------ETY---YEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDH 404 (434)
Q Consensus 336 l~~~~~~~~~~~~~~~q~a~~~~L~~~-------~~~---~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 404 (434)
+.+... ...+++.+.|.++..+++.+ +++ .++++++++++++.+.+.|+++ |+.+.+++++||+|+++
T Consensus 342 l~~~~~-~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~l 420 (498)
T 3ihj_A 342 LVKLLS-VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRI 420 (498)
T ss_dssp HHHHHH-HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEE
T ss_pred HHHHHh-ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEec
Confidence 887765 56788899999999988752 233 4567789999999999999997 99999999999999875
Q ss_pred CC----------CCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 405 TP----------FGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 405 ~~----------~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
.. .+..++..++.++++++||.+.||+.|+
T Consensus 421 ~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~ 460 (498)
T 3ihj_A 421 FIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFG 460 (498)
T ss_dssp CCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTC
T ss_pred cCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccC
Confidence 31 1332233337788888899999999885
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=346.29 Aligned_cols=316 Identities=26% Similarity=0.404 Sum_probs=273.1
Q ss_pred CeeEeCCCCCCCC--CcHHHHHHHHHHHHcC---CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 110 GAINLGQGFPNFD--GPDFVKDAAIQAIRDG---KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 110 ~~i~l~~g~p~~~--~~~~v~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+.|||+.|.|+.. +++.+.+++.+++.+. .. |++..|..+||+++++++.+.+|.+++++ +|++|+|+++++.
T Consensus 35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~-~v~~t~g~t~a~~ 112 (407)
T 2zc0_A 35 KLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPE-NIVITIGGTGALD 112 (407)
T ss_dssp CCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGG-GEEEESHHHHHHH
T ss_pred ceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcc-eEEEecCHHHHHH
Confidence 7899999987654 5678899888888753 35 98888999999999999988888777787 8999999999999
Q ss_pred HHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc----c--CCcEE-EecCCCCCccc
Q 013883 185 ATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS----K--NTRAI-LMNTPHNPTGK 257 (434)
Q Consensus 185 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~----~--~~~~i-~~~~p~NPTG~ 257 (434)
+++.+++++||+|++++|+|+++...+...|++++.+|.++ + ++|++.++++++ + ++++| ++++|+||||.
T Consensus 113 ~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~-~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~ 190 (407)
T 2zc0_A 113 LLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDN-D-GMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGV 190 (407)
T ss_dssp HHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-T-EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCC
T ss_pred HHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCC-C-CCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCc
Confidence 99999999999999999999999999999999999999875 2 489999999997 5 67887 47899999999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCC-ccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHH
Q 013883 258 MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH-ISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGV 336 (434)
Q Consensus 258 ~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~-~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l 336 (434)
+++.+++++|+++|++||+++|+||+|.++.+++.. .++..+. ..++++++.||||.+| +|+|+||+++++++++.+
T Consensus 191 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~~ 268 (407)
T 2zc0_A 191 TMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALD-NEGRVIVAGTLSKVLG-TGFRIGWIIAEGEILKKV 268 (407)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGC-SSCCEEEEEESTTTTC-TTSCCEEEECCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcC-CCCCEEEEcccccccC-CCcceEEEecCHHHHHHH
Confidence 999999999999999999999999999999886542 3444443 2368899999999999 999999999999999999
Q ss_pred HHHhhccccCCchHHHHHHHHHHhCC--h-HHHHHHHHHHHHHHHHHHHHhhhC--CCEeecCCeeEEEeeecCCCCCCC
Q 013883 337 RQAHSFLTFATSTPMQWAATAALRAP--E-TYYEELKRDYSAKKAILVEGLNAV--GFKVFPSSGTYFVVVDHTPFGHET 411 (434)
Q Consensus 337 ~~~~~~~~~~~~~~~q~a~~~~L~~~--~-~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 411 (434)
+.......++.+.+.|.++..+|+.. + +++++++++++++++.+.+.|++. |+.+..+.+++|+|++++. +. +
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ 346 (407)
T 2zc0_A 269 LMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPE-GA-D 346 (407)
T ss_dssp HHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECST-TC-C
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcCC-CC-C
Confidence 88777777888999999999999875 3 567788899999999999999873 6887778888899998743 22 5
Q ss_pred HHHHHHHHHHhcCeEEECCCCC
Q 013883 412 DIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 412 ~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
..+++++|++++||.+.||+.|
T Consensus 347 ~~~l~~~l~~~~gi~v~~g~~~ 368 (407)
T 2zc0_A 347 GISFANELMEREGVVVVPGKPF 368 (407)
T ss_dssp HHHHHHHHHHHTCEECBCSGGG
T ss_pred HHHHHHHHHHhCCeEEECchhc
Confidence 7789999987779999999876
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=347.56 Aligned_cols=323 Identities=22% Similarity=0.365 Sum_probs=272.1
Q ss_pred CCeeEeCCCCC----CCCCcHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHh------hcCCCCCCCCcEEEcC
Q 013883 109 HGAINLGQGFP----NFDGPDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKK------DSGLEVDPEKEVTVTS 177 (434)
Q Consensus 109 ~~~i~l~~g~p----~~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~------~~g~~~~~~~~i~~t~ 177 (434)
.+.|+|+.|.| ++++++.+.+++.+++.+. ...|++..|..+||+++++++++ ..|..++++ +|++|+
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~-~v~~~~ 111 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKD-NVVLCS 111 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGG-GEEEES
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcc-eEEEeC
Confidence 36899999986 5778899999999988764 36798888999999999999983 356667787 899999
Q ss_pred ChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC-CCCCCHHHHHhhcccCCcEEEecCCCCCcc
Q 013883 178 GCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTG 256 (434)
Q Consensus 178 G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG 256 (434)
|+++++.+++.+++++||+|++++|+|+++...++..|++++.++++++ ++.+|++.++++++++++++++++|+||||
T Consensus 112 g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG 191 (416)
T 1bw0_A 112 GGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCG 191 (416)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTC
T ss_pred ChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCCC
Confidence 9999999999999999999999999999999999999999999998753 477899999999988899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-----CccccCCCCCCCceEEEccCChhhccccceeeeEEeChh
Q 013883 257 KMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-----HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH 331 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-----~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~ 331 (434)
.+++.+++++|+++|++||++||+||+|.++.+++. ..++..+.. .++++++.||||.++++|+|+||++++++
T Consensus 192 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~Glr~G~~~~~~~ 270 (416)
T 1bw0_A 192 SNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFET-TVPRVILGGTAKNLVVPGWRLGWLLYVDP 270 (416)
T ss_dssp CCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCC-SCCEEEEEESTTTTSCGGGCCEEEEEECT
T ss_pred cccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccC-CCcEEEEecchhhCCCCCceEEEEEeeCc
Confidence 999999999999999999999999999999988764 234444432 34689999999999999999999998763
Q ss_pred --hHHHHH----HHhhccccCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeee
Q 013883 332 --LTWGVR----QAHSFLTFATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVD 403 (434)
Q Consensus 332 --~~~~l~----~~~~~~~~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 403 (434)
+++.+. ... ..+++.+.+.|.++..+|+. .++++++.+++++++++.+.+.|+++ |+.+..+++++|+|+.
T Consensus 271 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~ 349 (416)
T 1bw0_A 271 HGNGPSFLEGLKRVG-MLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSR 349 (416)
T ss_dssp TCSCHHHHHHHHHHH-HHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEE
T ss_pred hhhHHHHHHHHHHHh-ccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEe
Confidence 444433 221 13578889999999999986 36788999999999999999999987 8888878888888887
Q ss_pred cCCC---CCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 404 HTPF---GHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 404 ~~~~---~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+... +..+..+++++|++++||.+.||+.|+
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~ 383 (416)
T 1bw0_A 350 IDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH 383 (416)
T ss_dssp ECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGT
T ss_pred CCHHHcCCCCCHHHHHHHHHHHCCEEEecccccC
Confidence 6421 112577888888777799999998763
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=344.69 Aligned_cols=315 Identities=21% Similarity=0.339 Sum_probs=268.8
Q ss_pred hhcCCeeEeCCCCCCCC--CcHHHHHHHHHHHHcC---CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH
Q 013883 106 AIKHGAINLGQGFPNFD--GPDFVKDAAIQAIRDG---KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180 (434)
Q Consensus 106 ~~~~~~i~l~~g~p~~~--~~~~v~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~ 180 (434)
..+++.|||+.|.|+.. +++.+.+++.+++.+. ...|.+..|..+||++++++++ ++++ +|++++|++
T Consensus 29 ~~~~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g------~~~~-~v~~~~g~~ 101 (397)
T 2zyj_A 29 TQRPGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIG------VRPE-EVLITTGSQ 101 (397)
T ss_dssp HTSTTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHT------SCGG-GEEEESHHH
T ss_pred ccCCCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhC------CChh-hEEEeccHH
Confidence 33457899999987654 5778888888887652 3678888899999999999994 5566 899999999
Q ss_pred HHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEE-EecCCCCCcccC
Q 013883 181 EAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAI-LMNTPHNPTGKM 258 (434)
Q Consensus 181 ~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i-~~~~p~NPTG~~ 258 (434)
+++.+++.+++++||+|++++|+|+++...++..|++++.+|.++ + ++|++.+++++++ ++++| ++++||||||.+
T Consensus 102 ~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~-~~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~ 179 (397)
T 2zyj_A 102 QALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGE-E-GPDLDALEEVLKRERPRFLYLIPSFQNPTGGL 179 (397)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-T-EECHHHHHHHHHHCCCSCEEECCBSCTTTCCB
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCC-C-CCCHHHHHHHHhhcCCeEEEECCCCcCCCCCc
Confidence 999999999999999999999999999999999999999999875 2 4899999999986 78887 578999999999
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCC--CCceEEEccCChhhccccceeeeEEeChhhHHH
Q 013883 259 FTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGM--YERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG 335 (434)
Q Consensus 259 ~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~--~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~ 335 (434)
++.+++++|+++|++||+++|+||+|.++.+++. ..++..+... .++++++.|+||.+| +|+|+||+++++++++.
T Consensus 180 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~ 258 (397)
T 2zyj_A 180 TPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHPEALQK 258 (397)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecCHHHHHH
Confidence 9999999999999999999999999999988654 2344443211 167899999999999 99999999999999998
Q ss_pred HHHHhhccccCCchHHHHHHHHHHhCCh-HHHHHHHHHHHHHHHHHHHHhhhC---CCEeecCCeeEEEeeecCCCCCCC
Q 013883 336 VRQAHSFLTFATSTPMQWAATAALRAPE-TYYEELKRDYSAKKAILVEGLNAV---GFKVFPSSGTYFVVVDHTPFGHET 411 (434)
Q Consensus 336 l~~~~~~~~~~~~~~~q~a~~~~L~~~~-~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~~~~~~~ 411 (434)
++.......++.+.+.|.++..+|++.. +++++++++++++++.+.+.|++. |+.+..+++++|+|+++.. +. +
T Consensus 259 l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~-~~-~ 336 (397)
T 2zyj_A 259 LVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPK-GL-S 336 (397)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECST-TC-C
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCC-CC-C
Confidence 8877766667789999999999998754 678888999999999999999874 7888888889999998753 22 5
Q ss_pred HHHHHHHHHHhcCeEEECCCCC
Q 013883 412 DIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 412 ~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
..+++++|+++ ||.+.||..|
T Consensus 337 ~~~~~~~l~~~-gi~v~~g~~f 357 (397)
T 2zyj_A 337 AEGLFRRALEE-NVAFVPGGPF 357 (397)
T ss_dssp HHHHHHHHHHT-TEEEEESGGG
T ss_pred HHHHHHHHHHC-CCEEechHHh
Confidence 77899998876 9999999876
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-43 Score=350.28 Aligned_cols=328 Identities=16% Similarity=0.178 Sum_probs=260.5
Q ss_pred hhhccccHHHHHHHHhhcCCeeEeCCCCCC---CCCcHHHHHHHHHHH--Hc--CCCCCCCCCCcHHHHHHHHHHHHhhc
Q 013883 91 LEKFKTTIFTQMSMLAIKHGAINLGQGFPN---FDGPDFVKDAAIQAI--RD--GKNQYARGHGVPEFNSAIASRFKKDS 163 (434)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~---~~~~~~v~~~~~~~~--~~--~~~~Y~~~~G~~~lr~~ia~~l~~~~ 163 (434)
+...+..++..+.++....+.|||+.|.|+ ++.++.+.+++.+.+ .. ....|++..|.++||++++++++
T Consensus 14 l~~~~~~~~~~~~~l~~~~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~--- 90 (422)
T 3d6k_A 14 LAQVREEVTAKYAELKAKNLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALG--- 90 (422)
T ss_dssp ----CHHHHHHHHHHHHTTCCEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHT---
T ss_pred HHhhHHHHHHHHHHHhccCCeEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhC---
Confidence 333444445555555444468999999998 777777777665542 12 24689999999999999999995
Q ss_pred CCCCCCCCcEEEcCChHHHH--HHHHHHccCC------------CCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCC
Q 013883 164 GLEVDPEKEVTVTSGCTEAI--AATILGLINP------------GDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFA 229 (434)
Q Consensus 164 g~~~~~~~~i~~t~G~~~ai--~~~~~~l~~~------------gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~ 229 (434)
++++ +|++|+|+++++ .+++..+.++ +|+|++++|+|..+...++..|++++.+|++++ +
T Consensus 91 ---~~~~-~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~--g 164 (422)
T 3d6k_A 91 ---LPAD-LVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDE--G 164 (422)
T ss_dssp ---CCGG-GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT--E
T ss_pred ---CChh-HEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCC--C
Confidence 6777 899999999987 6777777665 357999999999999999999999999999753 4
Q ss_pred CCHHHHHhhccc-CCcEEE-ecCCCCCcccCCCHHHHHHHHHHHH-HcCcEEEEcCcCCc--cccCCC-CccccCC---C
Q 013883 230 IPIEELKSTISK-NTRAIL-MNTPHNPTGKMFTREELNVIASLCI-ENDVLVFSDEVYDK--LAFEMD-HISIASL---P 300 (434)
Q Consensus 230 ~d~~~l~~~i~~-~~~~i~-~~~p~NPTG~~~~~e~l~~i~~la~-~~~~~iI~Deay~~--~~~~~~-~~~~~~~---~ 300 (434)
+|++.+++++++ ++++|+ +++||||||.+++.+++++|+++|+ +||++||+||+|.. |.+++. ..++..+ .
T Consensus 165 ~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~ 244 (422)
T 3d6k_A 165 PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAA 244 (422)
T ss_dssp ECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHT
T ss_pred CCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhcc
Confidence 899999999986 788887 6899999999999999999999999 99999999999986 433321 2233221 2
Q ss_pred CCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhC-C--hHHHHHHHHHHHHHH
Q 013883 301 GMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRA-P--ETYYEELKRDYSAKK 377 (434)
Q Consensus 301 ~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~-~--~~~~~~~~~~~~~~~ 377 (434)
+..++++++.||||. +++|+|+||+++++++++.+...+....++.+.+.|.++..+|++ . +++++++++.+++++
T Consensus 245 ~~~~~~i~~~S~SK~-~~~GlriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 323 (422)
T 3d6k_A 245 GNPNRFWFMSSTSKI-THAGSGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKF 323 (422)
T ss_dssp TCTTCEEEEEESTTT-SCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEcChhhh-cCcccceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHH
Confidence 346789999999999 679999999999999999998888777788999999999999987 2 367888899999999
Q ss_pred HHHHHHhhh----CC-CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 378 AILVEGLNA----VG-FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 378 ~~l~~~L~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
+.+.+.|++ .| +.+..+++++|+|+++... +..++.+. ++++||.+.||..
T Consensus 324 ~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~---~~~~~~~~-l~~~gV~v~~~g~ 379 (422)
T 3d6k_A 324 ERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPG---TASRVVEL-AKEAGIALTGAGS 379 (422)
T ss_dssp HHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTT---CHHHHHHH-HHHTTEECCCTTT
T ss_pred HHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCC---CHHHHHHH-HHHCCeEEEcCcc
Confidence 988888865 34 6777888999999998532 35556554 4667999999543
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=332.74 Aligned_cols=304 Identities=18% Similarity=0.278 Sum_probs=264.5
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
.+.|||+.|.+.+++++.+.+++.+.+. ....|+ ..+..++|++++++++ ++++ +|++++|+++++..++.
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y~-~~~~~~lr~~la~~~~------~~~~-~v~~~~g~t~a~~~~~~ 102 (363)
T 3ffh_A 32 TKITKLSSNENPLGTSKKVAAIQANSSV-ETEIYP-DGWASSLRKEVADFYQ------LEEE-ELIFTAGVDELIELLTR 102 (363)
T ss_dssp SCCEECSSCSCTTCCCHHHHHHHHTCBS-CCCBC-----CHHHHHHHHHHHT------CCGG-GEEEESSHHHHHHHHHH
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHH-HhhcCC-CcchHHHHHHHHHHhC------CChh-hEEEeCCHHHHHHHHHH
Confidence 3789999999999999999988877654 345564 4578999999999986 5667 89999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
+++++||+|++++|+|..+...++..|++++.+++++ ++.+|++.+++++++++++|++++||||||.+++.+++++|+
T Consensus 103 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l~ 181 (363)
T 3ffh_A 103 VLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQ-DGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFL 181 (363)
T ss_dssp HHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCT-TSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred HHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCC-CCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHHH
Confidence 9999999999999999999999999999999999986 789999999999999999999999999999999999999999
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCc
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~ 348 (434)
+.|++ |+++|+||+|.++.+ +............++++++.||||.+|++|+|+||+++++++++.++.... +++.+
T Consensus 182 ~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~--~~~~~ 257 (363)
T 3ffh_A 182 DRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVRP--PFNTT 257 (363)
T ss_dssp TTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTCC--SCCCB
T ss_pred HhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhCC--CCCCC
Confidence 88887 999999999999887 544444444445789999999999999999999999999999998887654 67899
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh-CCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEE
Q 013883 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA-VGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVA 427 (434)
Q Consensus 349 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v 427 (434)
.+.+.++..+|++ .+++++.+++++++++.+.+.|++ .|+.+.+++++ |+|+++.. +..++.++|.+ +||.+
T Consensus 258 ~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~-~~~~~~~~----~~~~~~~~l~~-~gi~v 330 (363)
T 3ffh_A 258 SIGQKLAIEAIKD-QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGN-FVLIDLGI----EAGTIFSYLEK-NGYIT 330 (363)
T ss_dssp HHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCSS-EEEEECSS----CHHHHHHHHHH-TTEEC
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCCe-EEEEECCC----CHHHHHHHHHH-CCeEE
Confidence 9999999999986 578899999999999999999999 79998877665 57887743 57789888876 59999
Q ss_pred ECCCCC
Q 013883 428 IPTSVF 433 (434)
Q Consensus 428 ~pG~~F 433 (434)
.||+.|
T Consensus 331 ~~g~~~ 336 (363)
T 3ffh_A 331 RSGAAL 336 (363)
T ss_dssp EETTTT
T ss_pred EeCccC
Confidence 999876
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-42 Score=337.51 Aligned_cols=306 Identities=19% Similarity=0.281 Sum_probs=265.9
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
++.|+|+.|.+.+++++.+.+++.+++.. ...|++..+ .+||++++++++ ++++ +|++|+|+++++.+++.
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~~~~-~~lr~~la~~~~------~~~~-~v~~~~g~~~a~~~~~~ 100 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANK-AHLYPDDSM-IELKSTLAQKYK------VQNE-NIIIGAGSDQVIEFAIH 100 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGG-TTSCCCTTC-HHHHHHHHHHHT------CCGG-GEEEESSHHHHHHHHHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHh-hccCCCCCh-HHHHHHHHHHhC------CCcc-eEEECCCHHHHHHHHHH
Confidence 37899999999899999999999988763 567888777 899999999985 5677 89999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
+++++||+|++++|+|..+...++..|++++.++++++++ +|++.+++++++++++|++++||||||.+++.+++++|+
T Consensus 101 ~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~ 179 (365)
T 3get_A 101 SKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEFI 179 (365)
T ss_dssp HHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred HHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHHH
Confidence 9999999999999999999999999999999999833467 999999999999999999999999999999999999999
Q ss_pred HHHHHcCcEEEEcCcCCcccc--CC-CCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcccc
Q 013883 269 SLCIENDVLVFSDEVYDKLAF--EM-DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTF 345 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~--~~-~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~ 345 (434)
++| ++|+++|+||+|.++.+ .+ ...+........++++++.||||.+|++|+|+||+++++++++.++.... .+
T Consensus 180 ~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~--~~ 256 (365)
T 3get_A 180 KGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRA--PF 256 (365)
T ss_dssp HTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHSC--TT
T ss_pred HhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhcC--CC
Confidence 998 57999999999999885 32 33333333233578899999999999999999999999999998887654 46
Q ss_pred CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCe
Q 013883 346 ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGV 425 (434)
Q Consensus 346 ~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV 425 (434)
+.+.+.+.++..+|++ .+++++.+++++++++.+.+.|++.|+.+.++.+++ +|+++... +..++.++|.+ +||
T Consensus 257 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-~~~~~~~~---~~~~~~~~l~~-~gi 330 (365)
T 3get_A 257 NVSNLALKAAVAAMDD-DEFTEKTLENNFSQMELYKEFAKKHNIKIIDSYTNF-ITYFFDEK---NSTDLSEKLLK-KGI 330 (365)
T ss_dssp CSCHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCSSSE-EEEECSSS---CHHHHHHHHHT-TTE
T ss_pred CcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhCCCEECCCCCeE-EEEECCCC---CHHHHHHHHHH-CCE
Confidence 7899999999999996 578899999999999999999999999988777765 78887532 57788888876 599
Q ss_pred EEECCCCC
Q 013883 426 VAIPTSVF 433 (434)
Q Consensus 426 ~v~pG~~F 433 (434)
.+.||+.|
T Consensus 331 ~v~~g~~~ 338 (365)
T 3get_A 331 IIRNLKSY 338 (365)
T ss_dssp ECEECGGG
T ss_pred EEEECccC
Confidence 99999866
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-42 Score=340.68 Aligned_cols=312 Identities=23% Similarity=0.391 Sum_probs=256.8
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHc-----CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRD-----GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~-----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+++.|+|+.|.+++++++.+.+++.+++.+ ....|.+..|..+||+++++++. +|. ++++ +|++++|++++
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g~-~~~~-~v~~~~G~~~a 107 (400)
T 3asa_A 32 QHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFY--RGF-VDAK-EIFISDGAKVD 107 (400)
T ss_dssp TSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTS--TTS-SCGG-GEEEESCHHHH
T ss_pred CCceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHH--cCC-CCHH-HEEEccChHHH
Confidence 457899999999888899999999888764 24579888899999999999975 454 5677 89999999999
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCE-EEEEEcCCC-CCCCCHHHHHhhcccCCcEEEecCCCCCcccCCC
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYEATLSMAGAK-IKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFT 260 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~-~~~v~~~~~-~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~ 260 (434)
+.+++ .++++||+|++++|+|+++...+...|.+ ++.+|.+++ ++..|++. + +++++|++++||||||.+++
T Consensus 108 l~~~~-~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~----~-~~~~~v~l~~p~nptG~~~~ 181 (400)
T 3asa_A 108 LFRLL-SFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPE----D-THIDILCLCSPNNPTGTVLN 181 (400)
T ss_dssp HHHHH-HHHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCT----T-CCCSEEEEESSCTTTCCCCC
T ss_pred HHHHH-HHcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhh----c-cCccEEEEeCCCCCCCCcCC
Confidence 99865 45689999999999999999999999998 999998742 34444432 1 57899999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeChhh-------
Q 013883 261 REELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL------- 332 (434)
Q Consensus 261 ~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~------- 332 (434)
.+++++|+++|+++|+++|+||+|.++.+++. ...+..+....++++++.||||.+|++|+|+||+++++++
T Consensus 182 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~ 261 (400)
T 3asa_A 182 KDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHF 261 (400)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCB
T ss_pred HHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccchhhh
Confidence 99999999999999999999999999887653 2344444333467899999999999999999999999888
Q ss_pred HHHHHHHhhcccc-CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeee-cCCCCCC
Q 013883 333 TWGVRQAHSFLTF-ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVD-HTPFGHE 410 (434)
Q Consensus 333 ~~~l~~~~~~~~~-~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~ 410 (434)
+..+........+ +.+.+.|.++..+|++. ++++++++++++++.+.+.|++.|+.+.++.+++|+|++ ++. +.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~- 337 (400)
T 3asa_A 262 VIQDWERFLSTTFNGASIPAQEAGVAGLSIL--PQLEAIHYYRENSDLLRKALLATGFEVFGGEHAPYLWVKPTQA-NI- 337 (400)
T ss_dssp HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHHHHHTTCEEEECSSSSEEEEECCCT-TC-
T ss_pred HHHHHHHHhccCccCCChHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCceEEEEeccCC-CC-
Confidence 6666433332334 68899999999999864 677888999999999999999999998888788889998 632 22
Q ss_pred CHHHHHHHHHHhcCeEEECCCCC
Q 013883 411 TDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 411 ~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
++.+++++|++++||.+.||+.|
T Consensus 338 ~~~~~~~~l~~~~gv~v~~g~~f 360 (400)
T 3asa_A 338 SDRDLFDFFLREYHIAITPGIGF 360 (400)
T ss_dssp CTTTHHHHHHHHHSEECEEGGGG
T ss_pred CHHHHHHHHHHhCCEEEeChhHh
Confidence 34578888888789999999876
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-43 Score=350.30 Aligned_cols=323 Identities=16% Similarity=0.149 Sum_probs=265.8
Q ss_pred cHHHHHHHHhhcCCeeEeCCCCCCCCCc---HHHHHHH--HHHHHc---CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCC
Q 013883 97 TIFTQMSMLAIKHGAINLGQGFPNFDGP---DFVKDAA--IQAIRD---GKNQYARGHGVPEFNSAIASRFKKDSGLEVD 168 (434)
Q Consensus 97 ~~~~~~~~~~~~~~~i~l~~g~p~~~~~---~~v~~~~--~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~ 168 (434)
....++.++...++.|||+.|.|+.... +.+.+++ .+++.+ ....|++..|.++||+++++++. ++
T Consensus 21 ~~~~~~~~~~~~~~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~------~~ 94 (427)
T 3ppl_A 21 DIKRKFDELKSKNLKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLG------VP 94 (427)
T ss_dssp HHHHHHHHHHHTCCCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHT------SC
T ss_pred HHHHHHHHhhcCCceEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhC------CC
Confidence 3455566666777899999999885432 2355554 444433 24689999999999999999995 67
Q ss_pred CCCcEEEcCChHHHH--HHHHHHccC--C----------CCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHH
Q 013883 169 PEKEVTVTSGCTEAI--AATILGLIN--P----------GDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEE 234 (434)
Q Consensus 169 ~~~~i~~t~G~~~ai--~~~~~~l~~--~----------gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~ 234 (434)
++ +|++|+|+++++ .+++.++++ | ||+|++++|+|..+...++..|++++.+|++++ ++|++.
T Consensus 95 ~~-~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~--g~d~~~ 171 (427)
T 3ppl_A 95 VE-QVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMNED--GPDMDA 171 (427)
T ss_dssp GG-GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEETT--EECHHH
T ss_pred cc-eEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCCCC--CCCHHH
Confidence 77 899999999999 578888877 6 899999999999999999999999999999853 499999
Q ss_pred HHhhcc-cCCcEEEec-CCCCCcccCCCHHHHHHHHHHH-HHcCcEEEEcCcCCccccCCCCc---cccCC---CCCCCc
Q 013883 235 LKSTIS-KNTRAILMN-TPHNPTGKMFTREELNVIASLC-IENDVLVFSDEVYDKLAFEMDHI---SIASL---PGMYER 305 (434)
Q Consensus 235 l~~~i~-~~~~~i~~~-~p~NPTG~~~~~e~l~~i~~la-~~~~~~iI~Deay~~~~~~~~~~---~~~~~---~~~~~~ 305 (434)
++++++ +++++|+++ +||||||.+++.+++++|+++| ++||++||+||+|.++.|++... .+..+ .+..++
T Consensus 172 l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (427)
T 3ppl_A 172 VEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNR 251 (427)
T ss_dssp HHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTS
T ss_pred HHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCc
Confidence 999995 578888765 8899999999999999999999 99999999999999988876432 22222 134678
Q ss_pred eEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHH
Q 013883 306 TVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP---ETYYEELKRDYSAKKAILVE 382 (434)
Q Consensus 306 ~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~---~~~~~~~~~~~~~~~~~l~~ 382 (434)
+++++||||. +++|+|+||+++++++++.+........++.+.+.|.++..+|++. +++++++++.++++++.+.+
T Consensus 252 ~i~~~S~SK~-~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (427)
T 3ppl_A 252 FWAFTSTSKI-TLAGAGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLE 330 (427)
T ss_dssp EEEEEESTTT-SCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEechhhc-cCcCccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 6699999999999999999998888788899999999999999972 46778888999999998888
Q ss_pred Hhhh----C-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 383 GLNA----V-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 383 ~L~~----~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
.|.+ . ++.+..+++++|+|+++... +..++.+.| +++||.++||..|
T Consensus 331 ~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~---~~~~~~~~l-~~~gv~v~~~g~~ 382 (427)
T 3ppl_A 331 ILDSRLAEYGVAQWTVPAGGYFISLDVVPG---TASRVAELA-KEAGIALTGAGSS 382 (427)
T ss_dssp HHHHHHGGGTCCEECCCSBSSCEEEECSTT---CHHHHHHHH-HHTTEECCCTTTT
T ss_pred HHHHhcCCCCceEEeCCCccEEEEEECCcc---hHHHHHHHH-HHCCCEEecCcCc
Confidence 8765 2 57888889999999998542 466777766 4569999995444
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-43 Score=346.81 Aligned_cols=314 Identities=18% Similarity=0.225 Sum_probs=256.0
Q ss_pred CCeeEeCCCC---CCC--CCcHHHHHHHHHHHHc-CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEE--cCChH
Q 013883 109 HGAINLGQGF---PNF--DGPDFVKDAAIQAIRD-GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTV--TSGCT 180 (434)
Q Consensus 109 ~~~i~l~~g~---p~~--~~~~~v~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~--t~G~~ 180 (434)
++.|||+.|. ++. ++++.+.+++.+.+.+ ..+.|.+..|..+||+++++++.+..+..++++ +|++ |+|++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~-~v~~~~~~g~~ 104 (396)
T 2q7w_A 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDK-RARTAQTPGGT 104 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTT-CEEEEEESHHH
T ss_pred CCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccc-cEEEEecccch
Confidence 3689999996 332 4568899998887765 356798889999999999999975544334567 7988 99999
Q ss_pred HHHHHHHHHc--cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhccc---CCcEEEecCCCCC
Q 013883 181 EAIAATILGL--INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISK---NTRAILMNTPHNP 254 (434)
Q Consensus 181 ~ai~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~---~~~~i~~~~p~NP 254 (434)
+++.+++..+ +++||+|++++|+|+++...++..|++++.+|+++ +++.+|++.+++++++ +++++++++||||
T Consensus 105 ~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~np 184 (396)
T 2q7w_A 105 GALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNP 184 (396)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTT
T ss_pred hhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 9999998766 46999999999999999999999999999999853 3688999999999875 3677888999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC--CCccccCCCCCCCceEEEccCChhhccccceeeeEEe---C
Q 013883 255 TGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM--DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA---P 329 (434)
Q Consensus 255 TG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~--~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~---~ 329 (434)
||.+++.+++++|+++|++||+++|+||+|.++.+++ ...++..+...+++++++.||||.+|++|+|+||+++ +
T Consensus 185 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~ 264 (396)
T 2q7w_A 185 TGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAAD 264 (396)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcCC
Confidence 9999999999999999999999999999999998764 3334443433357899999999999999999999997 4
Q ss_pred h----hhHHHHHHHhhccccCCchHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHhhhCC----CEeecCC
Q 013883 330 P----HLTWGVRQAHSFLTFATSTPMQWAATAALRAP------ETYYEELKRDYSAKKAILVEGLNAVG----FKVFPSS 395 (434)
Q Consensus 330 ~----~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~------~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~ 395 (434)
+ ++++.+....+....+++.+.|.++..+|++. ++++++++++++++++.+.+.|++.| +.+.+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 344 (396)
T 2q7w_A 265 SETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQ 344 (396)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHC
T ss_pred HHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCC
Confidence 5 45555555444444556889999999999875 36788889999999999999999986 7777889
Q ss_pred eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 396 GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
+++|+|+++. . +++.++++++||.+.||
T Consensus 345 ~~~~~~~~~~------~-~~~~~~l~~~gv~v~~~ 372 (396)
T 2q7w_A 345 NGMFSFSGLT------K-EQVLRLREEFGVYAVAS 372 (396)
T ss_dssp CSSEEECCCC------H-HHHHHHHHHHCEECCTT
T ss_pred CceEEEecCC------H-HHHHHHHHhcCeeecCC
Confidence 9999998752 3 45666667789999986
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=345.99 Aligned_cols=314 Identities=18% Similarity=0.184 Sum_probs=261.1
Q ss_pred CCeeEeCCCCC-C----CCCcHHHHHHHHHHHHc--CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEE--cCCh
Q 013883 109 HGAINLGQGFP-N----FDGPDFVKDAAIQAIRD--GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTV--TSGC 179 (434)
Q Consensus 109 ~~~i~l~~g~p-~----~~~~~~v~~~~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~--t~G~ 179 (434)
++.|||+.|.| + ..+++.+.+++.+.+.+ ..+.|.+..|..+||+++++++.+.+|..++++ +|++ |+|+
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~-~v~~~~t~gg 108 (412)
T 1ajs_A 30 PRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEK-RVGGVQSLGG 108 (412)
T ss_dssp TTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTT-CEEEEEEEHH
T ss_pred CCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCC-cEEEEECCCc
Confidence 47899999975 3 24568899988887732 346798889999999999999976666656777 8999 9999
Q ss_pred HHHHHHHHH--HccCCC-----CeEEEcCCCchhHHHHHHHcCCE-EEEEEcCC-CCCCCCHHHHHhhccc---CCcEEE
Q 013883 180 TEAIAATIL--GLINPG-----DEVILFAPFYDSYEATLSMAGAK-IKCITLRP-PDFAIPIEELKSTISK---NTRAIL 247 (434)
Q Consensus 180 ~~ai~~~~~--~l~~~g-----d~Vlv~~p~y~~~~~~~~~~G~~-~~~v~~~~-~~~~~d~~~l~~~i~~---~~~~i~ 247 (434)
++++.+++. .++++| |+|++++|+|+++...++..|++ ++.+++++ +++.+|++.+++++++ ++++++
T Consensus 109 ~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~ 188 (412)
T 1ajs_A 109 TGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVL 188 (412)
T ss_dssp HHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEE
Confidence 999999854 456899 99999999999999999999999 99999853 4688999999999875 667888
Q ss_pred ecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC---CCccccCCCCCCCceEEEccCChhhccccceee
Q 013883 248 MNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM---DHISIASLPGMYERTVTMNSLGKTFSLTGWKIG 324 (434)
Q Consensus 248 ~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~---~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G 324 (434)
+++||||||.+++.+++++|+++|++||+++|+||+|.++.+++ ...++..+....++++++.||||.+|++|+|+|
T Consensus 189 ~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG 268 (412)
T 1ajs_A 189 HACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVG 268 (412)
T ss_dssp ESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEE
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceE
Confidence 89999999999999999999999999999999999999998865 333444443346789999999999998899999
Q ss_pred eEEe---Chh----hHHHHHHHhhccccCCchHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHhhhCC---
Q 013883 325 WAIA---PPH----LTWGVRQAHSFLTFATSTPMQWAATAALRAP------ETYYEELKRDYSAKKAILVEGLNAVG--- 388 (434)
Q Consensus 325 ~~~~---~~~----~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~------~~~~~~~~~~~~~~~~~l~~~L~~~g--- 388 (434)
|+++ +++ +++.+.........+++.+.|.++..+|++. ++++++++++++++++.+.+.|++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 348 (412)
T 1ajs_A 269 NLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPG 348 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred EEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 9999 777 4444555444444456899999999999975 35788899999999999999999886
Q ss_pred -CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 389 -FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 389 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
+.+..+++++|+|+++. .+++.++++++||.+.||
T Consensus 349 ~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~gv~v~~~ 384 (412)
T 1ajs_A 349 TWNHITDQIGMFSFTGLN-------PKQVEYLINQKHIYLLPS 384 (412)
T ss_dssp CCHHHHHCCSSEEECCCC-------HHHHHHHHHTTCEECCTT
T ss_pred CeeEEcCCCceEEEeCCC-------HHHHHHHHHhCCEEecCC
Confidence 77778889999998652 356677777889999886
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-43 Score=350.12 Aligned_cols=330 Identities=18% Similarity=0.218 Sum_probs=272.3
Q ss_pred HhhhccccHHHHHHHHhhcCCeeEeCCCCCC---CCCcHHHHHHHH--HHHHcC--CCCC-CCCCCcHHHHHHHHHHHHh
Q 013883 90 RLEKFKTTIFTQMSMLAIKHGAINLGQGFPN---FDGPDFVKDAAI--QAIRDG--KNQY-ARGHGVPEFNSAIASRFKK 161 (434)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~---~~~~~~v~~~~~--~~~~~~--~~~Y-~~~~G~~~lr~~ia~~l~~ 161 (434)
+++.++...+.++.++....+.|||+.|.|+ ++.++.+.+++. +++.++ ...| .+..|.++||++++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~- 84 (423)
T 3ez1_A 6 ASRPALDLARQAYEAFKARGLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLD- 84 (423)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHhhcCCceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhC-
Confidence 4555666778888888888899999999999 677777777764 444332 3789 888999999999999985
Q ss_pred hcCCCCCCCCcEEEcCChHHHHH--HHHHHccC--C---------CCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCC
Q 013883 162 DSGLEVDPEKEVTVTSGCTEAIA--ATILGLIN--P---------GDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDF 228 (434)
Q Consensus 162 ~~g~~~~~~~~i~~t~G~~~ai~--~~~~~l~~--~---------gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~ 228 (434)
++++ +|++|+|+++++. +++.++++ + ||+|++++|+|..+...++..|++++.+|++++
T Consensus 85 -----~~~~-~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-- 156 (423)
T 3ez1_A 85 -----VKAE-NVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD-- 156 (423)
T ss_dssp -----SCGG-GEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT--
T ss_pred -----CChh-hEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCC--
Confidence 6677 8999999999998 88888887 8 599999999999999999999999999999853
Q ss_pred CCCHHHHHhhc--ccCCcEEEe-cCCCCCcccCCCHHHHHHHHHHH-HHcCcEEEEcCcCCccccCC-CCc---cccCC-
Q 013883 229 AIPIEELKSTI--SKNTRAILM-NTPHNPTGKMFTREELNVIASLC-IENDVLVFSDEVYDKLAFEM-DHI---SIASL- 299 (434)
Q Consensus 229 ~~d~~~l~~~i--~~~~~~i~~-~~p~NPTG~~~~~e~l~~i~~la-~~~~~~iI~Deay~~~~~~~-~~~---~~~~~- 299 (434)
++|++.+++++ .+++++|++ ++||||||.+++.+++++|+++| ++||++||+||+|..+.+.+ ... ++..+
T Consensus 157 g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~ 236 (423)
T 3ez1_A 157 GPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLA 236 (423)
T ss_dssp EECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHH
T ss_pred CCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhh
Confidence 59999999999 468888865 58999999999999999999999 99999999999999766554 221 22222
Q ss_pred --CCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhC--C--hHHHHHHHHHH
Q 013883 300 --PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRA--P--ETYYEELKRDY 373 (434)
Q Consensus 300 --~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~--~--~~~~~~~~~~~ 373 (434)
.+..++++++.||||. +++|+|+||+++++++++.++..+....++.+.+.|.++..+|++ . .+++++.++.+
T Consensus 237 ~~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 315 (423)
T 3ez1_A 237 RDAGYPDRAFVFASTSKI-TFAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAII 315 (423)
T ss_dssp HHHTCTTSEEEEEESTTT-SCSSSSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHH
T ss_pred hccCCCCeEEEEeCchhh-ccCCcceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 1246789999999998 569999999999999999999888888899999999999999987 3 36777788888
Q ss_pred HHHHHHHHHHhhh----CC--CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC-CCCC
Q 013883 374 SAKKAILVEGLNA----VG--FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP-TSVF 433 (434)
Q Consensus 374 ~~~~~~l~~~L~~----~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p-G~~F 433 (434)
+++++.+.+.|.+ .| +.+..+++++|+|+++... +..++.+.| +++||.+.| |+.|
T Consensus 316 ~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~---~~~~~~~~l-~~~gv~v~~~g~~~ 378 (423)
T 3ez1_A 316 APKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP---VADRVVKLA-EAAGVSLTPAGATY 378 (423)
T ss_dssp HHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS---CHHHHHHHH-HHTTEECCCTTTTS
T ss_pred HHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC---cHHHHHHHH-HHCCcEEecCcccc
Confidence 8888877777654 55 7777889999999998542 455666655 566999999 5544
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-42 Score=341.83 Aligned_cols=319 Identities=20% Similarity=0.275 Sum_probs=252.6
Q ss_pred cCCeeEeCCCCCCCCCc--HHHHHHHHHHHHcCC-----CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH
Q 013883 108 KHGAINLGQGFPNFDGP--DFVKDAAIQAIRDGK-----NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~--~~v~~~~~~~~~~~~-----~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~ 180 (434)
++++|||+.|.|+..++ +.+.+++.+.+.+.. ..|.+..|.++||+++++++.+.+|..++++ +|++|+|++
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~t 108 (417)
T 3g7q_A 30 TPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQ-NIALTNGSQ 108 (417)
T ss_dssp --CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGG-GEEEESCHH
T ss_pred CCCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcc-cEEEeCCcH
Confidence 35899999999987443 456666766665432 4799999999999999999999999999998 899999999
Q ss_pred HHHHHHHHHccCCCC-----eEEEc-CCCchhHHHHHHHc------CCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEe
Q 013883 181 EAIAATILGLINPGD-----EVILF-APFYDSYEATLSMA------GAKIKCITLRPPDFAIPIEELKSTISKNTRAILM 248 (434)
Q Consensus 181 ~ai~~~~~~l~~~gd-----~Vlv~-~p~y~~~~~~~~~~------G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~ 248 (434)
+++.+++++++++|| +|+++ +|+|+++...+... +..+..++.+..++.+|++.++ +++++++|++
T Consensus 109 ~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~v~~ 186 (417)
T 3g7q_A 109 SAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IGEETGMICV 186 (417)
T ss_dssp HHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CCTTEEEEEE
T ss_pred HHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--cccCceEEEE
Confidence 999999999999987 89997 99999998765432 3344444433224678999988 7778999999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEe
Q 013883 249 NTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA 328 (434)
Q Consensus 249 ~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~ 328 (434)
++||||||.+++.+++++|+++|++||+++|+||+|..+..+...... .....++++++.|||| ++++|+|+||+++
T Consensus 187 ~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~--~~~~~~~~i~~~s~sK-~~~~G~r~G~~~~ 263 (417)
T 3g7q_A 187 SRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEA--RPLWNPNIILCMSLSK-LGLPGSRCGIIIA 263 (417)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCC--CCCCCTTEEEEEESGG-GTCTTSCCEEEEC
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccccccccc--ccCCCCCEEEEEechh-ccCCCcceEEEEe
Confidence 999999999999999999999999999999999999864321111111 1223578999999999 6889999999999
Q ss_pred ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCCh--HHHHH-HHHHHHHHHHHHHHHhhh----CCCEeecCCeeEEEe
Q 013883 329 PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPE--TYYEE-LKRDYSAKKAILVEGLNA----VGFKVFPSSGTYFVV 401 (434)
Q Consensus 329 ~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~--~~~~~-~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~ 401 (434)
++++++.++..+....++.+.+.|.++..+|++.. ++.++ +++.++++++.+.+.|++ .|+.+..+++++|+|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~ 343 (417)
T 3g7q_A 264 NDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLW 343 (417)
T ss_dssp CHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEE
T ss_pred CHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEE
Confidence 99999999988887888899999999999998753 33333 677888888888888766 268888899999999
Q ss_pred eecCCCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 402 VDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 402 ~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+++...+. +..+++++|. ++||.+.||+.|+
T Consensus 344 ~~~~~~~~-~~~~l~~~l~-~~gi~v~~g~~f~ 374 (417)
T 3g7q_A 344 LWFKDLPI-TTELLYQRLK-ARGVLMVPGHYFF 374 (417)
T ss_dssp EECTTCSS-CHHHHHHHHH-HTTEECEEGGGGC
T ss_pred EEcCCCCC-CHHHHHHHHH-HCCEEEECchhhC
Confidence 98854333 5778888885 5699999998774
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-42 Score=334.45 Aligned_cols=304 Identities=18% Similarity=0.280 Sum_probs=263.9
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+.+.|||+.|.+++++++.+.+++.+++.+ ...|+. .|..+||++++++++ ++++ +|++++|+++++..++
T Consensus 15 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~-~~~~~l~~~la~~~~------~~~~-~i~~~~g~~~a~~~~~ 85 (354)
T 3ly1_A 15 TDNPIRINFNENPLGMSPKAQAAARDAVVK-ANRYAK-NEILMLGNKLAAHHQ------VEAP-SILLTAGSSEGIRAAI 85 (354)
T ss_dssp SSSCEECSSCCCSSCCCHHHHHHHHHTGGG-TTSCCH-HHHHHHHHHHHHHTT------SCGG-GEEEESHHHHHHHHHH
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHHHhh-CcCCCC-CchHHHHHHHHHHhC------CChH-HEEEeCChHHHHHHHH
Confidence 347899999999999999999999888764 566744 477899999999885 5667 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc--cCCcEEEecCCCCCcccCCCHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS--KNTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~--~~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
.+++++||+|++++|+|.++...++..|++++.++.++ ++.+|++.++++++ +++++|++++||||||.+++.++++
T Consensus 86 ~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~ 164 (354)
T 3ly1_A 86 EAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLD-NWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIE 164 (354)
T ss_dssp HHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCT-TSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHH
T ss_pred HHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCCC-CCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHH
Confidence 99999999999999999999999999999999999885 68999999999998 7899999999999999999999999
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC-CceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccc
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY-ERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT 344 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~-~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~ 344 (434)
+|+++| +||+++|+||+|.++.+++............ ++++++.||||.+|++|+|+||+++++++++.++.....
T Consensus 165 ~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~-- 241 (354)
T 3ly1_A 165 PWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVAG-- 241 (354)
T ss_dssp HHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGGTTC--
T ss_pred HHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHHHhcCC--
Confidence 999999 8999999999999998876544443332223 789999999999999999999999999999888776653
Q ss_pred cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcC
Q 013883 345 FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVG 424 (434)
Q Consensus 345 ~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~G 424 (434)
++.+.+.+.++..+|++ .+++++.+++++++++.+.+.|++.|+.+.++.+. |+|+++.. +..++.+.|.+ +|
T Consensus 242 ~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~l~~-~g 314 (354)
T 3ly1_A 242 EKINFSGVDAALASMND-SAFITYSKKSNDVSRQILLKALEDLKLPYLPSEGN-FVFHQLVV----PLKDYQTHMAD-AG 314 (354)
T ss_dssp SCCCHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCCSS-EEEEECSS----CHHHHHHHHHH-TT
T ss_pred CCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHCCCeECCCCce-EEEEECCC----CHHHHHHHHHH-CC
Confidence 78899999999999986 47889999999999999999999889888766655 57888743 57788888875 59
Q ss_pred eEEECCCC
Q 013883 425 VVAIPTSV 432 (434)
Q Consensus 425 V~v~pG~~ 432 (434)
|.+. |..
T Consensus 315 i~v~-g~~ 321 (354)
T 3ly1_A 315 VLIG-RAF 321 (354)
T ss_dssp EECC-CCC
T ss_pred EEEe-ecC
Confidence 9998 654
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-42 Score=344.45 Aligned_cols=313 Identities=16% Similarity=0.127 Sum_probs=257.9
Q ss_pred CCeeEeCCCCC-CC----CCcHHHHHHHHH-HHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEE--cCCh
Q 013883 109 HGAINLGQGFP-NF----DGPDFVKDAAIQ-AIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTV--TSGC 179 (434)
Q Consensus 109 ~~~i~l~~g~p-~~----~~~~~v~~~~~~-~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~--t~G~ 179 (434)
++.|||+.|.| +. ++++.+.+++.+ .+... .+.|.+..|..+||+++++++.+.+|..++++ +|++ |+|+
T Consensus 29 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~t~g~ 107 (412)
T 1yaa_A 29 ATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQED-RVISVQSLSG 107 (412)
T ss_dssp SSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTT-CEEEEEEEHH
T ss_pred CCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcc-eEEEEeccch
Confidence 37899999975 44 456888888888 76543 45798888999999999999986677666777 8999 9999
Q ss_pred HHHHHHHH--HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEc-CCCCCCCCHHHHHhhcccC---CcEEEecCCCC
Q 013883 180 TEAIAATI--LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITL-RPPDFAIPIEELKSTISKN---TRAILMNTPHN 253 (434)
Q Consensus 180 ~~ai~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~-~~~~~~~d~~~l~~~i~~~---~~~i~~~~p~N 253 (434)
++++.+++ ..++++||+|++++|+|+++...++..|++++.+++ +++++++|++.++++++++ ++++++++|||
T Consensus 108 ~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~n 187 (412)
T 1yaa_A 108 TGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHN 187 (412)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCT
T ss_pred HhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 99999883 444579999999999999999999999999999998 5447889999999998763 34455599999
Q ss_pred CcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC---CCccccCCCCCCC---ceEEEccCChhhccccceeeeEE
Q 013883 254 PTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM---DHISIASLPGMYE---RTVTMNSLGKTFSLTGWKIGWAI 327 (434)
Q Consensus 254 PTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~---~~~~~~~~~~~~~---~~i~i~S~SK~~g~~G~R~G~~~ 327 (434)
|||.+++.+++++|+++|++||+++|+||+|.++.+++ ...++..+....+ ++++++||||.+|++|+|+||++
T Consensus 188 PtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~ 267 (412)
T 1yaa_A 188 PTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFH 267 (412)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEEE
Confidence 99999999999999999999999999999999998765 3333433322234 79999999999998899999998
Q ss_pred --e-----Chh----hHHHHHHHhhccccCCchHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHhhhCC--
Q 013883 328 --A-----PPH----LTWGVRQAHSFLTFATSTPMQWAATAALRAP------ETYYEELKRDYSAKKAILVEGLNAVG-- 388 (434)
Q Consensus 328 --~-----~~~----~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~------~~~~~~~~~~~~~~~~~l~~~L~~~g-- 388 (434)
+ +++ +++++....+....+++.+.|.++..+|++. ++++++++++++++++.+.+.|++++
T Consensus 268 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 347 (412)
T 1yaa_A 268 LALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTP 347 (412)
T ss_dssp EECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 7 565 7777777555555667889999999999975 25788999999999999999999876
Q ss_pred --CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 389 --FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 389 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
+++.++++++|+|+++ +...+ .++++++||.+.|
T Consensus 348 ~~~~~~~~~~~~~~~~~~------~~~~~-~~~l~~~gi~v~~ 383 (412)
T 1yaa_A 348 GNWDHIVNQCGMFSFTGL------TPQMV-KRLEETHAVYLVA 383 (412)
T ss_dssp SCCTHHHHCCSSEEECCC------CHHHH-HHHHHHHCEECCT
T ss_pred CCeeeeccCceEEEeeCC------CHHHH-HHHHHhCCEEecc
Confidence 8888889999999765 24344 7777778999887
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-42 Score=344.58 Aligned_cols=320 Identities=23% Similarity=0.421 Sum_probs=263.9
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHH-----------cCCCCCCCCCCcHHHHHHHHHHHHhhcCCC--CCCCCcEEEc
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIR-----------DGKNQYARGHGVPEFNSAIASRFKKDSGLE--VDPEKEVTVT 176 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~--~~~~~~i~~t 176 (434)
+.|+|+.+...+++ +.+.+++.+... .....|++..|..+||+++++++++.+|.. ++++ +|+++
T Consensus 37 ~~i~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~-~i~~~ 114 (428)
T 1iay_A 37 GVIQMGLAENQLCL-DLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE-RVVMA 114 (428)
T ss_dssp SBEECSSCCCCSSH-HHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTT-SCEEE
T ss_pred ceeeeccccchhhH-HHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChh-hEEEc
Confidence 67899988665544 467776664321 113579888899999999999999888866 6777 89999
Q ss_pred CChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHH-HHcCCEEEEEEcCC-CCCCCCHHHHHhhccc------CCcEEEe
Q 013883 177 SGCTEAIAATILGLINPGDEVILFAPFYDSYEATL-SMAGAKIKCITLRP-PDFAIPIEELKSTISK------NTRAILM 248 (434)
Q Consensus 177 ~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~-~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~i~~ 248 (434)
+|+++++..++.+++++||+|++++|+|..+...+ ...|++++.+|+++ +++.+|++.+++++++ ++++|++
T Consensus 115 ~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 194 (428)
T 1iay_A 115 GGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLIL 194 (428)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEE
Confidence 99999999999999999999999999999998755 46899999999875 3578999999998864 6889999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCC-------CCceEEEccCChhhcccc
Q 013883 249 NTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGM-------YERTVTMNSLGKTFSLTG 320 (434)
Q Consensus 249 ~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~-------~~~~i~i~S~SK~~g~~G 320 (434)
++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+... .++++++.||||.+|++|
T Consensus 195 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~G 274 (428)
T 1iay_A 195 TNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG 274 (428)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCC
Confidence 99999999999999999999999999999999999999887653 2233333322 578999999999999999
Q ss_pred ceeeeEEe-ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCe
Q 013883 321 WKIGWAIA-PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPE---TYYEELKRDYSAKKAILVEGLNAVGFKVFPSSG 396 (434)
Q Consensus 321 ~R~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~---~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 396 (434)
+|+||+++ ++++++.++.... .++.+.+.|.++..+|++.+ +++++++++++++++.+.+.|+++|+.+.++++
T Consensus 275 lr~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 352 (428)
T 1iay_A 275 FRVGIIYSFNDDVVNCARKMSS--FGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNA 352 (428)
T ss_dssp GCEEEEEESCHHHHHHHHHHHT--TSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSS
T ss_pred ceEEEEEeCCHHHHHHHHHHHh--cccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCe
Confidence 99999999 6788888876543 36788999999999998742 467888999999999999999999998888878
Q ss_pred eEEEeeecCCCCC----CCHHHHHHHHHHhcCeEEECCCCC
Q 013883 397 TYFVVVDHTPFGH----ETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 397 ~~~~~~~~~~~~~----~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
++|+|+++..... .+..+++++|++++||.+.||+.|
T Consensus 353 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~ 393 (428)
T 1iay_A 353 GLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSF 393 (428)
T ss_dssp SSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGG
T ss_pred eEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhh
Confidence 8899998753210 124578888887779999999866
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=341.33 Aligned_cols=320 Identities=23% Similarity=0.389 Sum_probs=264.2
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCC------------CCCCCCCCcHHHHHHHHHHHHhhcC--CCCCCCCcEEE
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGK------------NQYARGHGVPEFNSAIASRFKKDSG--LEVDPEKEVTV 175 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~------------~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~~i~~ 175 (434)
+.|+|+.+...+. .+.+.+++.+...... ..|.+..|..+||+++++++++..+ ..++++ +|++
T Consensus 39 ~~i~lg~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~-~v~~ 116 (435)
T 3piu_A 39 GIIQMGLAENQLC-FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN-HLVL 116 (435)
T ss_dssp SBEECSSCCCCSS-HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG-GEEE
T ss_pred CeEEecccccccc-HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHH-HEEE
Confidence 5789998765544 5566666655433211 4699999999999999999986544 556777 8999
Q ss_pred cCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHH-HcCCEEEEEEcCC-CCCCCCHHHHHhhccc------CCcEEE
Q 013883 176 TSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLS-MAGAKIKCITLRP-PDFAIPIEELKSTISK------NTRAIL 247 (434)
Q Consensus 176 t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~i~ 247 (434)
++|+++++..++.+++++||.|+++.|+|.++...+. ..|++++.+++++ .++.+|++.+++++++ ++++|+
T Consensus 117 ~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 196 (435)
T 3piu_A 117 TAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVL 196 (435)
T ss_dssp EEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 9999999999999999999999999999999998888 7899999999985 3477999999999976 789999
Q ss_pred ecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCC-ccccCCCCC---------CCceEEEccCChhhc
Q 013883 248 MNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH-ISIASLPGM---------YERTVTMNSLGKTFS 317 (434)
Q Consensus 248 ~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~-~~~~~~~~~---------~~~~i~i~S~SK~~g 317 (434)
+++||||||.+++.+++++|+++|++||+++|+||+|.++.|++.. ..+..+... +++++++.||||.+|
T Consensus 197 i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g 276 (435)
T 3piu_A 197 VTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLG 276 (435)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSC
T ss_pred EcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccC
Confidence 9999999999999999999999999999999999999998887643 233222222 578899999999999
Q ss_pred cccceeeeEEe-ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHhhhCCCEeec
Q 013883 318 LTGWKIGWAIA-PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP---ETYYEELKRDYSAKKAILVEGLNAVGFKVFP 393 (434)
Q Consensus 318 ~~G~R~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 393 (434)
++|+|+||+++ ++++.+.++.... .++.+.+.+.++..+|.+. ++++++++++++++++.+.+.|++.|+.+.+
T Consensus 277 ~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 354 (435)
T 3piu_A 277 LPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLN 354 (435)
T ss_dssp CGGGCEEEEEESCHHHHHHHHHHGG--GSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECC
T ss_pred CCceeEEEEEeCCHHHHHHHHHHhh--cCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 99999999999 4667777765543 4567888999999999874 3366788899999999999999999999999
Q ss_pred CCeeEEEeeecCCCCCC----CHHHHHHHHHHhcCeEEECCCCC
Q 013883 394 SSGTYFVVVDHTPFGHE----TDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 394 ~~~~~~~~~~~~~~~~~----~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+++++|+|+++...... +..+++++|++++||.+.||+.|
T Consensus 355 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~ 398 (435)
T 3piu_A 355 GNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSC 398 (435)
T ss_dssp CCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGG
T ss_pred CCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCccc
Confidence 99999999987542110 24578888988889999998876
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-41 Score=329.27 Aligned_cols=294 Identities=26% Similarity=0.373 Sum_probs=257.2
Q ss_pred HHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHH
Q 013883 129 DAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYE 208 (434)
Q Consensus 129 ~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~ 208 (434)
+++.+++......|.+..|..+||+++++++. .++++ +|++++|+++++..++.+++++||+|++++|+|.++.
T Consensus 46 ~~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~-----~~~~~-~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~ 119 (375)
T 3op7_A 46 EDFYKKLQGTKLNYGWIEGSPAFKKSVSQLYT-----GVKPE-QILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLY 119 (375)
T ss_dssp HHHHHHHHTSCCSSCCTTCCHHHHHHHHTTSS-----SCCGG-GEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHH
T ss_pred HHHHHHHhcCCcCCCCCCChHHHHHHHHHHhc-----cCChh-hEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHH
Confidence 35566677777889999999999999999874 25567 8999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCcc
Q 013883 209 ATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKL 287 (434)
Q Consensus 209 ~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~ 287 (434)
..+...|++++.+++++ .++.+|++.+++++++++++|++++||||||.+++.+++++|+++|++||+++|+||+|.++
T Consensus 120 ~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~ 199 (375)
T 3op7_A 120 DIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSF 199 (375)
T ss_dssp HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCC
T ss_pred HHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence 99999999999999874 45778999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHH
Q 013883 288 AFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYE 367 (434)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~ 367 (434)
.++ ....+ ....++++++.||||.+|++|+|+||+++++++++.++..+....++.+.+.+.++..+|+..+++++
T Consensus 200 ~~~-~~~~~---~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 275 (375)
T 3op7_A 200 SEL-DVPSI---IEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILE 275 (375)
T ss_dssp SSS-CCCCH---HHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTHHHHHH
T ss_pred ccc-CCCch---hhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhccHHHHH
Confidence 765 21222 22356789999999999999999999999999999998888777888899999999999997677888
Q ss_pred HHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 368 ELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+.+++++++++.+.+.|++. ++.+..+.++++.|+.+.. +. +..+++++|++++||.+.||+.|+
T Consensus 276 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~ll~~~gi~v~~g~~~~ 341 (375)
T 3op7_A 276 RNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAV-DM-PMEDFCLQLLQEHGVLLVPGNRFE 341 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECC-SS-CHHHHHHHHHHHHCEECEEGGGGT
T ss_pred HHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCC-CC-CHHHHHHHHHHhCCEEEeChhhhC
Confidence 89999999999999999986 7888888888888887642 22 577899999878899999998763
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=323.58 Aligned_cols=303 Identities=18% Similarity=0.313 Sum_probs=261.3
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+.+.|||+.|.+.+++++.+.+++.+++.+ ...|+ ..+..++|++++++++ ++++ +|++|+|+++++.+++
T Consensus 25 ~~~~idl~~~~~~~~~~~~v~~a~~~~~~~-~~~y~-~~~~~~l~~~la~~~~------~~~~-~i~~~~g~t~al~~~~ 95 (361)
T 3ftb_A 25 GRELLDYSSNINPLGIPKSFLNNIDEGIKN-LGVYP-DVNYRRLNKSIENYLK------LKDI-GIVLGNGASEIIELSI 95 (361)
T ss_dssp ---CEETTCCCCTTCSCHHHHTTHHHHHHG-GGSCC-CTTCHHHHHHHHHHHT------CCSC-EEEEESSHHHHHHHHH
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHHH-hcCCC-CccHHHHHHHHHHHhC------CCcc-eEEEcCCHHHHHHHHH
Confidence 347899999988888899999999988876 45674 4688999999999995 6677 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
..+ |+|+++.|+|.++...++..|++++.+++++ +..++++.+++++++ +++|++++||||||.+++.+++++|
T Consensus 96 ~~~----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i 169 (361)
T 3ftb_A 96 SLF----EKILIIVPSYAEYEINAKKHGVSVVFSYLDE-NMCIDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHV 169 (361)
T ss_dssp TTC----SEEEEEESCCTHHHHHHHHTTCEEEEEECCT-TSCCCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHH
T ss_pred HHc----CcEEEecCChHHHHHHHHHcCCeEEEeecCc-ccCCCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHH
Confidence 888 8999999999999999999999999999985 456788999999988 9999999999999999999999999
Q ss_pred HHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEE-eChhhHHHHHHHhhccccC
Q 013883 268 ASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI-APPHLTWGVRQAHSFLTFA 346 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~-~~~~~~~~l~~~~~~~~~~ 346 (434)
+++|++||+++|+||+|.++.++ ............++++++.|+||.+|++|+|+||++ .++++++.++.... .++
T Consensus 170 ~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~--~~~ 246 (361)
T 3ftb_A 170 LKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQN--PWN 246 (361)
T ss_dssp HHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSC--TTC
T ss_pred HHHhhhcCCEEEEECcchhhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCC--CCC
Confidence 99999999999999999999886 444444444556789999999999999999999999 89999888876543 578
Q ss_pred CchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCE-eecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcC
Q 013883 347 TSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFK-VFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVG 424 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~G 424 (434)
.+.+.+.++..+|++ .+++++.+++++++++.+.+.|+++ ++. +.++.+++ +|+++.. .+..+++++|.++ |
T Consensus 247 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~l~~~l~~~-g 320 (361)
T 3ftb_A 247 INCFAEMAAINCLKD-TNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHANF-VLCRLEN---ISGEKLYDSLLKE-D 320 (361)
T ss_dssp SCHHHHHHHHHTSSC-HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSSSE-EEEEESS---SCHHHHHHHHHTT-T
T ss_pred CCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCCCeE-EEEEcCC---CCHHHHHHHHHHC-C
Confidence 899999999999996 6789999999999999999999988 788 77777765 5677643 2577899988776 9
Q ss_pred eEEECCCCCC
Q 013883 425 VVAIPTSVFY 434 (434)
Q Consensus 425 V~v~pG~~F~ 434 (434)
|.+.||+.|.
T Consensus 321 i~v~~g~~~~ 330 (361)
T 3ftb_A 321 IVIRRCCNFI 330 (361)
T ss_dssp EECEECTTST
T ss_pred eEEeeCccCC
Confidence 9999998773
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=327.03 Aligned_cols=294 Identities=20% Similarity=0.323 Sum_probs=248.8
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.|+|+.|.+++++++.+ ++ .....|++. +..+||++++++++ ++++ +|++++|+++++.+++++
T Consensus 30 ~~i~l~~~~~~~~~~~~v------a~-~~~~~Y~~~-~~~~lr~~la~~~~------~~~~-~v~~~~G~~~ai~~~~~~ 94 (356)
T 1fg7_A 30 GDVWLNANEYPTAVEFQL------TQ-QTLNRYPEC-QPKAVIENYAQYAG------VKPE-QVLVSRGADEGIELLIRA 94 (356)
T ss_dssp CSEECSSCCCSSCCCCCC------CC-CCTTSCCCS-SCHHHHHHHHHHHT------SCGG-GEEEESHHHHHHHHHHHH
T ss_pred ceEEeeCCCCCCCCCHhH------hh-hhhccCCCc-cHHHHHHHHHHHhC------CChH-HEEEcCCHHHHHHHHHHH
Confidence 679999999888877766 22 245679876 48999999999985 5666 899999999999999999
Q ss_pred ccCCC-CeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 190 LINPG-DEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 190 l~~~g-d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
++++| |+|++++|+|+.+...++..|++++.+|+++ ++.+|++.++++++ ++++|++++||||||.+++.+++++|+
T Consensus 95 ~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~ 172 (356)
T 1fg7_A 95 FCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLD-NWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLL 172 (356)
T ss_dssp HCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCT-TSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred HhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCC-CCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 99999 9999999999999999999999999998874 67899999999998 889999999999999999999999999
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCc
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~ 348 (434)
++|+ +|+++|+||+|.++.. ..++..+....++++++.||||.+|++|+|+||+++++++++.++..+. .++.+
T Consensus 173 ~~~~-~~~~li~De~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~--~~~~~ 246 (356)
T 1fg7_A 173 ELTR-GKAIVVADEAYIEFCP---QASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIA--PYPLS 246 (356)
T ss_dssp HHHT-TTCEEEEECTTGGGSG---GGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSC--SSCSC
T ss_pred HhCC-CCCEEEEEccchhhcC---CCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHHHHHHHhcC--CCCCC
Confidence 9999 9999999999998762 1233333334578999999999999999999999999999988887653 45788
Q ss_pred hHHHHHHHHHHhCCh-HHHHHHHHHHHHHHHHHHHHhhhCC--CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCe
Q 013883 349 TPMQWAATAALRAPE-TYYEELKRDYSAKKAILVEGLNAVG--FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGV 425 (434)
Q Consensus 349 ~~~q~a~~~~L~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV 425 (434)
.+.|.++.++|++.. +++++.+++++++++.+.+.|++++ +.+.+ .+++|+|+++. +..+++++| .++||
T Consensus 247 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~-----~~~~l~~~L-~~~gI 319 (356)
T 1fg7_A 247 TPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFD-SETNYILARFK-----ASSAVFKSL-WDQGI 319 (356)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECC-CSSSEEEEEET-----THHHHHHHH-HHTTE
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECC-CCCeEEEEECC-----CHHHHHHHH-HHCCE
Confidence 999999999997522 2388889999999999999999886 44444 45667788873 467888888 45699
Q ss_pred EEEC-CCCC
Q 013883 426 VAIP-TSVF 433 (434)
Q Consensus 426 ~v~p-G~~F 433 (434)
.+.| |..|
T Consensus 320 ~v~~~g~~~ 328 (356)
T 1fg7_A 320 ILRDQNKQP 328 (356)
T ss_dssp ECEECTTST
T ss_pred EEEECCCCC
Confidence 9999 8765
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-41 Score=337.85 Aligned_cols=322 Identities=18% Similarity=0.243 Sum_probs=261.1
Q ss_pred hcCCee-EeCCCCCCCCCc--HHHHHHHHHHHHc-------C-----CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCC
Q 013883 107 IKHGAI-NLGQGFPNFDGP--DFVKDAAIQAIRD-------G-----KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEK 171 (434)
Q Consensus 107 ~~~~~i-~l~~g~p~~~~~--~~v~~~~~~~~~~-------~-----~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~ 171 (434)
..+++| +|+.|.|+.+++ +.+.+++.+.+.+ . ...|.+..|.++||+++++++.+.+|..++++
T Consensus 29 ~~~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~- 107 (444)
T 3if2_A 29 KSDQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSE- 107 (444)
T ss_dssp HSSSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-
T ss_pred cCchhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHH-
Confidence 446899 999999987433 4455555555544 2 15799999999999999999999999989998
Q ss_pred cEEEcCChHHHHHHHHHHccCCCC--------------eEEEc-CCCchhHHHH------HHHcCCEEEEEEcCCC----
Q 013883 172 EVTVTSGCTEAIAATILGLINPGD--------------EVILF-APFYDSYEAT------LSMAGAKIKCITLRPP---- 226 (434)
Q Consensus 172 ~i~~t~G~~~ai~~~~~~l~~~gd--------------~Vlv~-~p~y~~~~~~------~~~~G~~~~~v~~~~~---- 226 (434)
+|++|+|+++++.+++.+++++|| +|+++ +|+|..|... +...|.+++.++.+++
T Consensus 108 ~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 187 (444)
T 3if2_A 108 NIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFF 187 (444)
T ss_dssp GEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEE
T ss_pred HEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccCcc
Confidence 899999999999999999999998 78876 9999998763 4557888888888752
Q ss_pred CCCCCHHHHHhh---cccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 227 DFAIPIEELKST---ISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 227 ~~~~d~~~l~~~---i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
++.+|++.|+++ +++++++|++++||||||.+++.+++++|+++|++||+++|+||+|..+......... .....
T Consensus 188 ~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~--~~~~~ 265 (444)
T 3if2_A 188 KYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDA--HLNWD 265 (444)
T ss_dssp EEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCC--CCCCC
T ss_pred ccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccc--cccCC
Confidence 257999999998 6778999999999999999999999999999999999999999999864321111111 11235
Q ss_pred CceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCCh--HHHHH-HHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPE--TYYEE-LKRDYSAKKAIL 380 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~--~~~~~-~~~~~~~~~~~l 380 (434)
++++++.||||. +++|+|+||+++++++++.+........++.+.+.|.++..+|+... ++.++ +++.++++++.+
T Consensus 266 ~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 344 (444)
T 3if2_A 266 NNTILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLA 344 (444)
T ss_dssp TTEEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCEEEEechhhc-cCCCCceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 789999999997 77999999999999999999888877788899999999999999753 23333 677788888888
Q ss_pred HHHhhh----CCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 381 VEGLNA----VGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 381 ~~~L~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
.+.|++ .++.+..+++++|+|+.+...+. +..+++++|. ++||.+.||+.|+
T Consensus 345 ~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~l~~~l~-~~gi~v~~g~~~~ 400 (444)
T 3if2_A 345 VKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPI-STLDLYERLK-AKGTLIVPSEYFF 400 (444)
T ss_dssp HHHHHHHSSSSSEEEECCCBSSEEEEEETTCSS-CHHHHHHHHH-HTTEECEEGGGSC
T ss_pred HHHHHHhcccCCceEecCCccEEEEEEcCCCCC-CHHHHHHHHH-HCCeEEecchhhc
Confidence 877765 36788888999999998854333 5778888875 5699999998874
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=325.53 Aligned_cols=301 Identities=21% Similarity=0.346 Sum_probs=261.7
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHc-CCCCCCCCCCcHHHHHHHHHHHHhhcCCCC-CCCCcEEEcCChHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRD-GKNQYARGHGVPEFNSAIASRFKKDSGLEV-DPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~-~~~~~i~~t~G~~~ai~~~ 186 (434)
.+.|+|+.|.+++++++.+.+++.+++.+ ....|++ .|..+||++++++++ + +++ +|++|+|+++++.++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~l~~~la~~~g------~~~~~-~i~~~~g~t~a~~~~ 101 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV-PSSEALRAKLKEVMQ------VPAGM-EVLLGNGSDEIISML 101 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-CCHHHHHHHHHHHHT------CCTTC-EEEEEEHHHHHHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-CcHHHHHHHHHHHhC------CCCcc-eEEEcCCHHHHHHHH
Confidence 47899999999999999999999998875 4567876 488999999999985 3 456 899999999999999
Q ss_pred HHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHH
Q 013883 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 187 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
+.+++++||+|++++|+|.++...++..|++++.+++++ ++.+|++.+++++++ ++++|++++||||||.+++.++++
T Consensus 102 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~ 180 (367)
T 3euc_A 102 ALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA-DFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADME 180 (367)
T ss_dssp HHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCT-TSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHH
T ss_pred HHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCC-CCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHH
Confidence 999999999999999999999999999999999999986 788999999999988 899999999999999999999999
Q ss_pred HHHHHHHHc--CcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcc
Q 013883 266 VIASLCIEN--DVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL 343 (434)
Q Consensus 266 ~i~~la~~~--~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~ 343 (434)
+|+++|++| |+++|+||+|.+|...+ ... .+ ...++++++.||||. +++|+|+||+++++++++.++....
T Consensus 181 ~i~~~~~~~~~~~~li~De~~~~~~~~~-~~~--~~-~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~~~-- 253 (367)
T 3euc_A 181 AIVRAAQGSVCRSLVVVDEAYQPFAQES-WMS--RL-TDFGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLDKVRP-- 253 (367)
T ss_dssp HHHHHTBTTSCBCEEEEECTTCCSSSCC-SGG--GG-GTCTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHGGGCC--
T ss_pred HHHHhhhhcCCCcEEEEeCcchhhcccc-hHH--HH-hhCCCEEEEecchhh-cccccCceeeeeCHHHHHHHHHhCC--
Confidence 999999999 99999999999976432 111 12 235788999999999 8899999999999999888766543
Q ss_pred ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHh
Q 013883 344 TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKE 422 (434)
Q Consensus 344 ~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 422 (434)
.++.+.+.+.++..+|+. .+++++.+++++++++.+.+.|+++ |+.+.++. ++|+|+++. +..++.++| .+
T Consensus 254 ~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~~~~~~~~~-----~~~~l~~~l-~~ 325 (367)
T 3euc_A 254 PYNVNVLTEATALFALEH-VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSA-ANFLLARVP-----DAAQTFDRL-LA 325 (367)
T ss_dssp SSCCCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCCS-SSEEEEECS-----CHHHHHHHH-HT
T ss_pred CCCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCC-CeEEEEECC-----CHHHHHHHH-HH
Confidence 577899999999999998 7788999999999999999999998 89866554 456778764 477888887 45
Q ss_pred cCeEEECCCCC
Q 013883 423 VGVVAIPTSVF 433 (434)
Q Consensus 423 ~GV~v~pG~~F 433 (434)
+||.+.||+.|
T Consensus 326 ~gi~v~~~~~~ 336 (367)
T 3euc_A 326 RKVLIKNVSKM 336 (367)
T ss_dssp TTEECEECGGG
T ss_pred CCeEEEECCcc
Confidence 69999999865
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=334.82 Aligned_cols=312 Identities=18% Similarity=0.206 Sum_probs=252.6
Q ss_pred CCeeEeCCCCC---C--CCCcHHHHHHHHHHHHc-CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEE--cCChH
Q 013883 109 HGAINLGQGFP---N--FDGPDFVKDAAIQAIRD-GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTV--TSGCT 180 (434)
Q Consensus 109 ~~~i~l~~g~p---~--~~~~~~v~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~--t~G~~ 180 (434)
++.|||+.|.+ + .++++.+.+++.+++.. ..+.|.+..|..+||+++++++.+. + ++++ +|++ |+|++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~--~~~~-~v~~~~~~g~~ 101 (394)
T 2ay1_A 26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGD-G--LKSE-TTATLATVGGT 101 (394)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGG-G--CCGG-GEEEEEEEHHH
T ss_pred ccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCC-C--CCcc-cEEEEecCCch
Confidence 47899999964 2 24578899998887765 4567998889999999999998532 2 2566 8998 99999
Q ss_pred HHHHHHHHHccC--CCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccC---CcEEEecCCCCC
Q 013883 181 EAIAATILGLIN--PGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKN---TRAILMNTPHNP 254 (434)
Q Consensus 181 ~ai~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~---~~~i~~~~p~NP 254 (434)
+++.+++..+.. +||+|++++|+|+++...+...|++++.+++++ +++.+|++.+++++++. ++++++++||||
T Consensus 102 ~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~np 181 (394)
T 2ay1_A 102 GALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNP 181 (394)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTT
T ss_pred hHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 999999887754 999999999999999999999999999999853 36889999999998753 567778999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC--CCccccCCCCCCCceEEEccCChhhccccceeeeEEe---C
Q 013883 255 TGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM--DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA---P 329 (434)
Q Consensus 255 TG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~--~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~---~ 329 (434)
||.+++.+++++|+++|++||+++|+||+|.++.+++ ...++..+....++++++.||||.+|++|+|+||+++ +
T Consensus 182 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~ 261 (394)
T 2ay1_A 182 TGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCAD 261 (394)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCC
Confidence 9999999999999999999999999999999988753 2223333322346789999999999999999999998 5
Q ss_pred hhhHHH----HHHHhhccccCCchHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHhhhCC----CEeecCC
Q 013883 330 PHLTWG----VRQAHSFLTFATSTPMQWAATAALRAP------ETYYEELKRDYSAKKAILVEGLNAVG----FKVFPSS 395 (434)
Q Consensus 330 ~~~~~~----l~~~~~~~~~~~~~~~q~a~~~~L~~~------~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~ 395 (434)
+++++. +....+....+++.+.|.++..+|++. ++++++++++++++++.+.+.|++++ +.+.+++
T Consensus 262 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 341 (394)
T 2ay1_A 262 AATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEH 341 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHC
T ss_pred HHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCC
Confidence 655433 333333444556889999999999875 35788899999999999999998864 7777888
Q ss_pred eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 396 GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+++|+|+++. . +++.++++++||.+.||-
T Consensus 342 ~g~~~~~~~~------~-~~~~~~l~~~gi~v~~~~ 370 (394)
T 2ay1_A 342 RGMFSRLGAT------P-EQVKRIKEEFGIYMVGDS 370 (394)
T ss_dssp CSSEEECCCC------H-HHHHHHHHHHCEECCTTC
T ss_pred ceEEEeeCCC------H-HHHHHHHHhCCEEecCCC
Confidence 8999998762 3 345566677799999874
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-42 Score=353.13 Aligned_cols=318 Identities=20% Similarity=0.279 Sum_probs=258.9
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhh-cC-CCCCCCCcEEEcCChHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKD-SG-LEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~-~g-~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
++|+|+.|.|++++++.+.+ +.+++.. ...|.+..|..++|+++++++... .+ ..+++.++|++|+|+++++..++
T Consensus 104 ~~i~l~~g~~~~~~~~~v~a-~~~~~~~-~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~ 181 (533)
T 3f6t_A 104 DAVNYCHTELGLNRDKVVAE-WVNGAVA-NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAF 181 (533)
T ss_dssp HHHHHHHHTTCCCHHHHHHH-HHHHHHT-CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHH
T ss_pred hheeccCCCCCcCCcHHHHH-HHHHHHh-CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHH
Confidence 46889999998875555554 4454443 233447889999999999999766 34 55554238999999999999999
Q ss_pred HH-----ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC---CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCC
Q 013883 188 LG-----LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP---PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMF 259 (434)
Q Consensus 188 ~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~---~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~ 259 (434)
.+ ++++||+|++++|+|.++...+...|++++.++++. .++++|++.+++++++++++|++++||||||.++
T Consensus 182 ~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~ 261 (533)
T 3f6t_A 182 HSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEF 261 (533)
T ss_dssp HHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCC
T ss_pred HHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCcccc
Confidence 98 789999999999999999999999999999999863 4688999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH-HcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh-----hH
Q 013883 260 TREELNVIASLCI-ENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH-----LT 333 (434)
Q Consensus 260 ~~e~l~~i~~la~-~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~-----~~ 333 (434)
+.+++++|+++|+ +||++||+||+|.++.++. ..+... ..+++++++||||.+|++|+|+||++++++ ++
T Consensus 262 ~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~--~~~~~~--~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~~li 337 (533)
T 3f6t_A 262 DTNALNAIKQAVEKNPKLMIISDEVYGAFVPNF--KSIYSV--VPYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDDNI 337 (533)
T ss_dssp CHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTC--CCHHHH--SGGGEEEEEESHHHHTCGGGCEEEEEEESSCHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccccccCc--cCHhhc--CCCCEEEEecCcccCCCcccceEEEEECcHHHHHHHH
Confidence 9999999999999 6899999999999987642 233332 247899999999999999999999999876 33
Q ss_pred HHH--------------------------------HHHhhccccCCchHHHHH----HHHHHh------CChHHHHHHHH
Q 013883 334 WGV--------------------------------RQAHSFLTFATSTPMQWA----ATAALR------APETYYEELKR 371 (434)
Q Consensus 334 ~~l--------------------------------~~~~~~~~~~~~~~~q~a----~~~~L~------~~~~~~~~~~~ 371 (434)
+.+ +........+.+.+.|.+ +..+|. ..+++++++++
T Consensus 338 ~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~ 417 (533)
T 3f6t_A 338 AHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARK 417 (533)
T ss_dssp HTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHH
T ss_pred HhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHH
Confidence 322 233344567788888888 456674 34678999999
Q ss_pred HHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCC-----C---------CCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 372 DYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPF-----G---------HETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 372 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-----~---------~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
.++++++.+.+.|. .++.+.+++++||+|+++... + ..++.+++.+|++++||++.||+.|+
T Consensus 418 ~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~ 493 (533)
T 3f6t_A 418 LVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFG 493 (533)
T ss_dssp HHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEEC
T ss_pred HHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccC
Confidence 99999999999998 888888999999999987421 1 01466888889888999999998774
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=358.17 Aligned_cols=320 Identities=23% Similarity=0.329 Sum_probs=275.2
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.|||+.|.|++++++.+.+++.+++.+....|.+. ..++|+++++++.+.+|..++++ +|++++|+++++.+++.+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~-~v~~~~g~~~a~~~~~~~ 108 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQLVYGYTYA--SDELLQAVLDWEKSEHQYSFDKE-DIVFVEGVVPAISIAIQA 108 (392)
Confidence 679999999999999999999998887666778775 78999999999998888878888 899999999999999999
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCC--CCCCCHHHHHhhcc-cCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP--DFAIPIEELKSTIS-KNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~--~~~~d~~~l~~~i~-~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
++++||+|+++.|+|+++...+...|++++.++++++ ++.+|++.++++++ .++++|++++||||||.+++.+++++
T Consensus 109 ~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~ 188 (392)
T 3b1d_A 109 FTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQ 188 (392)
Confidence 9999999999999999999999999999999998532 36689999999997 57899999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCC-CCceEEEccCChhhccccceeeeEEeCh-hhHHHHHHHhhcc
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGM-YERTVTMNSLGKTFSLTGWKIGWAIAPP-HLTWGVRQAHSFL 343 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~-~~~~i~i~S~SK~~g~~G~R~G~~~~~~-~~~~~l~~~~~~~ 343 (434)
|+++|++||+++|+||+|.++.+++. ..++..+... .++++++.||||.+|++|+|+||+++++ ++++.++......
T Consensus 189 l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~ 268 (392)
T 3b1d_A 189 IGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVN 268 (392)
Confidence 99999999999999999999988653 3344444322 5788999999999999999999999975 5888887766554
Q ss_pred cc-CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh-C-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHH
Q 013883 344 TF-ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA-V-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLI 420 (434)
Q Consensus 344 ~~-~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll 420 (434)
.+ +.+.+.|.++..+|++.+++++++++.++++++.+.+.|++ + |+.+.+++++|++|+++...+. +..+++++|+
T Consensus 269 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~l~ 347 (392)
T 3b1d_A 269 NHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDYGL-TDDALFTLLH 347 (392)
Confidence 43 56888899999999876678899999999999999999987 4 8888899999999988753222 4567888887
Q ss_pred HhcCeEEECCCCC
Q 013883 421 KEVGVVAIPTSVF 433 (434)
Q Consensus 421 ~~~GV~v~pG~~F 433 (434)
+++||.+.||..|
T Consensus 348 ~~~gi~v~~g~~f 360 (392)
T 3b1d_A 348 DQAKVILNRGSDY 360 (392)
Confidence 6779999999876
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-40 Score=321.41 Aligned_cols=301 Identities=17% Similarity=0.291 Sum_probs=253.3
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.|||+.|.+++++++.+.+++.+++.+ ...|++ .|..+||++++++++ ++++ +|++|+|+++++.+++..
T Consensus 25 ~~idl~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~-~~~~~l~~~la~~~~------~~~~-~v~~~~g~~~al~~~~~~ 95 (364)
T 1lc5_A 25 QLLDFSANINPLGMPVSVKRALIDNLDC-IERYPD-ADYFHLHQALARHHQ------VPAS-WILAGNGETESIFTVASG 95 (364)
T ss_dssp GSEECSSCCCTTCCCHHHHHHHHHTGGG-GGSCCC-TTCHHHHHHHHHHHT------SCGG-GEEEESSHHHHHHHHHHH
T ss_pred ceEEeccccCCCCCCHHHHHHHHHHHHH-hhcCCC-CCHHHHHHHHHHHHC------cCHH-HEEECCCHHHHHHHHHHH
Confidence 5799999988788888999998887754 456865 478999999999985 5566 899999999999999998
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
+ +||+|++++|+|+++...++..|++++.+|.++ +++.+ ++.+.+.+++++++|++++||||||.+++.+++++|+
T Consensus 96 ~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~ 172 (364)
T 1lc5_A 96 L--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIA 172 (364)
T ss_dssp H--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred c--CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 8 779999999999999999999999999999875 24443 5767777777899999999999999999999999999
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEE-eChhhHHHHHHHhhccccCC
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI-APPHLTWGVRQAHSFLTFAT 347 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~-~~~~~~~~l~~~~~~~~~~~ 347 (434)
++|++||+++|+||+|.++.+++ .+...+.+..++++++.|+||.+|++|+|+||++ +++++++.++.... +++.
T Consensus 173 ~~~~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~--~~~~ 248 (364)
T 1lc5_A 173 DRCKSLNINLILDEAFIDFIPHE--TGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQM--PWSV 248 (364)
T ss_dssp HHHHHHTCEEEEECTTGGGSTTC--CCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSC--TTCS
T ss_pred HHhhhcCcEEEEECcChhhccCc--cchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCC--CCCC
Confidence 99999999999999999987652 2222222335788999999999999999999999 99999988877653 6788
Q ss_pred chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 348 STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 348 ~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
+.+.+.++..+|++ .+++++++++++++++.+.+.|+++ |+.+.++.++ |+|+++.. +..+++++|+++ ||.
T Consensus 249 ~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~-~~~~~~~~----~~~~l~~~l~~~-gi~ 321 (364)
T 1lc5_A 249 NALAALAGEVALQD-SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRAN-YLLLRCER----EDIDLQRRLLTQ-RIL 321 (364)
T ss_dssp CHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSS-EEEEEESC----TTCCHHHHHHTT-TEE
T ss_pred CHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCCe-EEEEECCC----cHHHHHHHHHHC-CcE
Confidence 99999999999997 6788999999999999999999987 8888776655 55677642 234688888755 999
Q ss_pred EECCCCC
Q 013883 427 AIPTSVF 433 (434)
Q Consensus 427 v~pG~~F 433 (434)
+.||+.|
T Consensus 322 v~~g~~~ 328 (364)
T 1lc5_A 322 IRSCANY 328 (364)
T ss_dssp CEECTTS
T ss_pred EeeCccc
Confidence 9999877
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=317.34 Aligned_cols=302 Identities=20% Similarity=0.313 Sum_probs=256.8
Q ss_pred eeEeCCCCCCCCCcHHHHHHHHHHHHcC---CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 111 AINLGQGFPNFDGPDFVKDAAIQAIRDG---KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 111 ~i~l~~g~p~~~~~~~v~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
.|||+.|.+++++++.+.+++.+++.+. ...|++..+ .+||+++++++.+.+|..++++ +|++++|+++++..++
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~-~v~~~~G~~~al~~~~ 109 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRD-NLWAANGSNEILQQLL 109 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGG-GEEEESHHHHHHHHHH
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChH-hEEECCChHHHHHHHH
Confidence 3899999888889999999999888652 567887766 7999999999998888878887 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
.+++++||+|++++|+|+++...++..|++++.+|.++ ++.+|++.+++++++ ++++|++++||||||.+++.+++++
T Consensus 110 ~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~ 188 (369)
T 3cq5_A 110 QAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRGA-DFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVER 188 (369)
T ss_dssp HHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECCT-TSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCc-CCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999764 678999999999987 8999999999999999999877666
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCC-ceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcccc
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYE-RTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTF 345 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~-~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~ 345 (434)
|++ .+++++|+||+|.++.++ .+...+.+..+ +++++.||||.+|++|+|+||+++++++++.++.... .+
T Consensus 189 l~~---~~~~~li~De~~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~--~~ 260 (369)
T 3cq5_A 189 IIN---VAPGIVIVDEAYAEFSPS---PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRL--PY 260 (369)
T ss_dssp HHH---HCSSEEEEECTTGGGCCS---CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTTSC--TT
T ss_pred HHH---hCCCEEEEECCchhhcCC---cchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHcCC--CC
Confidence 655 556999999999998754 22223322345 8899999999999999999999999998887775543 46
Q ss_pred CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCe
Q 013883 346 ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGV 425 (434)
Q Consensus 346 ~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV 425 (434)
+.+.+.+.++..+|++ .+++++.+++++++++.+.+.|++.|+.+.++.++ |+|+++. .+..+++++|. ++||
T Consensus 261 ~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~----~~~~~l~~~l~-~~gi 333 (369)
T 3cq5_A 261 HLSALSQAAAIVALRH-SADTLGTVEKLSVERVRVAARLEELGYAVVPSESN-FVFFGDF----SDQHAAWQAFL-DRGV 333 (369)
T ss_dssp CSCHHHHHHHHHHHHT-HHHHHTHHHHHHHHHHHHHHHHHHHTCEEECCSSS-EEEEECC----SSHHHHHHHHH-HTTE
T ss_pred CCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhCCCEECCCCCe-EEEEECC----CCHHHHHHHHH-HCCE
Confidence 7889999999999987 56788899999999999999999889988866555 6677763 25778888885 5699
Q ss_pred EEECC
Q 013883 426 VAIPT 430 (434)
Q Consensus 426 ~v~pG 430 (434)
.+.||
T Consensus 334 ~v~~~ 338 (369)
T 3cq5_A 334 LIRDV 338 (369)
T ss_dssp ECBCC
T ss_pred EEEEC
Confidence 99997
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=342.56 Aligned_cols=314 Identities=18% Similarity=0.270 Sum_probs=248.6
Q ss_pred eeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHH-HhhcCCCC---CCCCcEEEcCChHHHHHHH
Q 013883 111 AINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRF-KKDSGLEV---DPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 111 ~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l-~~~~g~~~---~~~~~i~~t~G~~~ai~~~ 186 (434)
.|+|++|.|++++ +.+.+++.+.+. ...|++..|..+||+++++++ .+.++..+ +++ +|++|+|+++++..+
T Consensus 106 ~i~l~~g~~~~~~-~~~~~al~~~~~--~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~-~I~~t~G~~eal~~~ 181 (546)
T 2zy4_A 106 SLSYVRDQLGLDP-AAFLHEMVDGIL--GCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESV-NLFAVEGGTAAMAYI 181 (546)
T ss_dssp HHHHHHHTSCCCH-HHHHHHHHHHHH--TCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGE-EEEEEEHHHHHHHHH
T ss_pred hhecccCCCCCCC-hHHHHHHHHhhh--cCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcc-eEEEECCHHHHHHHH
Confidence 6789999888754 445455655553 367999999999999988765 44443322 355 899999999999999
Q ss_pred HHH-----ccCCCCeEEEcCCCchhHHHHHHH--cCCEEEEEEcCCC-CCCCCHHHHHhhcccCCcEEEecCCCCCcccC
Q 013883 187 ILG-----LINPGDEVILFAPFYDSYEATLSM--AGAKIKCITLRPP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKM 258 (434)
Q Consensus 187 ~~~-----l~~~gd~Vlv~~p~y~~~~~~~~~--~G~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~ 258 (434)
+.+ ++++||+|++++|+|+.|...+.. .|++++.++.+++ ++.+|++.+++++.+++++|++++||||||.+
T Consensus 182 ~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~ 261 (546)
T 2zy4_A 182 FESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVK 261 (546)
T ss_dssp HHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCSSSCBC
T ss_pred HHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCCCCCcc
Confidence 987 579999999999999999988655 4689999998753 47899999999888889999999999999999
Q ss_pred CCHHHHHHHHHHH--HHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh-hHHH
Q 013883 259 FTREELNVIASLC--IENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH-LTWG 335 (434)
Q Consensus 259 ~~~e~l~~i~~la--~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~-~~~~ 335 (434)
++.+++++|+++| +++|++||+||+|.+|.++ ..++.... .++++++.||||.+|++|+|+||++++++ ++++
T Consensus 262 ~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~--~~s~~~~~--~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~ 337 (546)
T 2zy4_A 262 MDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD--FQSLFAIC--PENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDL 337 (546)
T ss_dssp CCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT--CCCHHHHC--GGGEEEEEESTTTTTCGGGCEEEEEEESSCHHHH
T ss_pred CCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc--CcCHHHhC--CCCEEEEEeCccccCCCCcceEEEEECCHHHHHH
Confidence 9999999999999 7899999999999998753 33343332 46899999999999999999999999875 7776
Q ss_pred HHHH-------------h-----------------------hccccCCchHHHHHH-----HHHHhCChHHHHHHHHHHH
Q 013883 336 VRQA-------------H-----------------------SFLTFATSTPMQWAA-----TAALRAPETYYEELKRDYS 374 (434)
Q Consensus 336 l~~~-------------~-----------------------~~~~~~~~~~~q~a~-----~~~L~~~~~~~~~~~~~~~ 374 (434)
+... . .....+.+.+.|.++ ..+|++.+.|.+++++.|+
T Consensus 338 l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~~ 417 (546)
T 2zy4_A 338 ALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIR 417 (546)
T ss_dssp HHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6321 1 022346778888764 3445556788999999999
Q ss_pred HHHHHHHHHhhhCCCEeecCCeeEEEeeecCCC---------------CCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 375 AKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPF---------------GHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 375 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
++++.+.+.|. .++.+.+++++||+|+++... +. ++.+++.++++++||.+.||+.|+
T Consensus 418 ~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~-~~~~~l~~ll~~~gV~v~pG~~F~ 490 (546)
T 2zy4_A 418 RRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQS-STGDMLFRIADETGIVLLPGRGFG 490 (546)
T ss_dssp HHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHC-CHHHHHHHHHHHHSCCCEESSCTT
T ss_pred HHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccC-CHHHHHHHHHHHCCEEEeCccccC
Confidence 99999999996 667767889999999987421 11 244556667778899999999884
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-41 Score=332.02 Aligned_cols=298 Identities=16% Similarity=0.179 Sum_probs=238.1
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHH--Hc--CCCCCCCCCCc-----HHHHHHHHHHHHhhcCCCCCCCCcEEEcCC
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAI--RD--GKNQYARGHGV-----PEFNSAIASRFKKDSGLEVDPEKEVTVTSG 178 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~--~~--~~~~Y~~~~G~-----~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G 178 (434)
+.++|||+.|.|+++.++++.+++.+.. .. ....|++..|. ++||++++++++ .+|..++++++|++|+|
T Consensus 21 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i~~t~G 99 (391)
T 3bwn_A 21 SDFVVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYIVVGTG 99 (391)
T ss_dssp TTSCEECSSCCCGGGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEEEEEEH
T ss_pred CCCeeEcCCCCCCCCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeEEEeCC
Confidence 4478999999999877777766653322 11 34679999998 999999999998 67888877448999999
Q ss_pred hHHHHHHHHHHccCCCC----eEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCC
Q 013883 179 CTEAIAATILGLINPGD----EVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNP 254 (434)
Q Consensus 179 ~~~ai~~~~~~l~~~gd----~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NP 254 (434)
+++++.+++.+++++|| +|++++|+|..|...++..|++++.++++.+++ + .+++++|++++||||
T Consensus 100 ~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l--~--------~~~~k~v~l~~p~NP 169 (391)
T 3bwn_A 100 STQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAWGF--D--------KKGPYIELVTSPNNP 169 (391)
T ss_dssp HHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEESTTC--C--------CCSCEEEEEESSCTT
T ss_pred hHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCHHHc--C--------CCCCEEEEECCCCCC
Confidence 99999999999999999 999999999999999999999999888875332 1 257899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEe-ChhhH
Q 013883 255 TGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA-PPHLT 333 (434)
Q Consensus 255 TG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~-~~~~~ 333 (434)
||.+++ +|++.+++++++||+||+|.. +....+. ...+++++++||||.+|++|+|+||+++ +++++
T Consensus 170 tG~~~~-----~l~~~~~~~~~~ii~De~y~~----~~~~~l~---~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~ 237 (391)
T 3bwn_A 170 DGTIRE-----TVVNRPDDDEAKVIHDFAYYW----PHYTPIT---RRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVA 237 (391)
T ss_dssp TCCCCC-----CCC-----CCCEEEEECTTCS----TTTSCCC---CCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHH
T ss_pred CchhHH-----HHHHHhhcCCCEEEEeCCCCC----CCCCccc---cCCCCeEEEEechhhcCCCccceEEEEecCHHHH
Confidence 999996 344422223399999999973 2222222 2457899999999999999999999997 89999
Q ss_pred HHHHHHhhccccCCchHHHHHHHHHHhCC----------hHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecC--------
Q 013883 334 WGVRQAHSFLTFATSTPMQWAATAALRAP----------ETYYEELKRDYSAKKAILVEGLNAV-GFKVFPS-------- 394 (434)
Q Consensus 334 ~~l~~~~~~~~~~~~~~~q~a~~~~L~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-------- 394 (434)
+.+...+....++++.+.|.++..+|++. +++++++++.++++++.+.+.|++. |+.+..+
T Consensus 238 ~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~ 317 (391)
T 3bwn_A 238 KKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYF 317 (391)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTT
T ss_pred HHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccc
Confidence 99988887667889999999999999863 4578999999999999999999987 6666543
Q ss_pred -----CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 395 -----SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 395 -----~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
++|+|+|+++.. . +++..+++++||.+.||+.|+
T Consensus 318 ~~~~~~~g~~~~~~~~~-----~-~~~~~~l~~~gV~v~pg~~fg 356 (391)
T 3bwn_A 318 GKSLESYPAFAWLGTKE-----E-TDLVSELRRHKVMSRAGERCG 356 (391)
T ss_dssp TEEECCCCSEEEEEESS-----S-CCHHHHHHHTTEECEEGGGGT
T ss_pred cccCCCcceEEEecCCc-----H-HHHHHHHHHCCEEEccCCCCC
Confidence 445689998742 1 244555677899999998873
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-39 Score=314.14 Aligned_cols=295 Identities=18% Similarity=0.247 Sum_probs=245.6
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
.+.|||+.|.+.+++++.+.+++.+++ .....|++..+ .+||++++++++ ++++ +|++|+|+++++.+++.
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~~~-~~lr~~la~~~~------~~~~-~i~~t~g~~~al~~~~~ 85 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVENL-NCIRHYPEPDA-GTLRQMLAKRNS------VDNN-AILVTNGPTAAFYQIAQ 85 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHTG-GGGGSCCCTTC-HHHHHHHHHHTT------CCGG-GEEEESHHHHHHHHHHH
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHhH-hHHhcCCCCcH-HHHHHHHHHHhC------cCHH-HEEEcCCHHHHHHHHHH
Confidence 478999999999999999999998887 44567888777 899999999885 6677 89999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEc-CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITL-RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~-~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
++. ||+|++++|+|..+...++..|++++.++. ++ +.++++ +++++|++++||||||.+++.+++++|
T Consensus 86 ~l~--gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~--------~~~~~v~i~~p~nptG~~~~~~~l~~l 154 (350)
T 3fkd_A 86 AFR--GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNED-IGEADF--------SNMDFCWLCNPNNPDGRLLQRTEILRL 154 (350)
T ss_dssp HTT--TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSC-GGGSCC--------TTCSEEEEESSCTTTCCCCCHHHHHHH
T ss_pred HHC--CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCc-cccCcc--------CCCCEEEEeCCCCCcCCCCCHHHHHHH
Confidence 988 999999999999999999999999999998 54 223333 578999999999999999999999999
Q ss_pred HHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCC
Q 013883 268 ASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT 347 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~ 347 (434)
+++|+++ ++|+||+|.++.+++.... ..+ ...++++++.||||.+|++|+|+||+++++++++.++.... .++.
T Consensus 155 ~~~~~~~--~li~Dea~~~~~~~~~~~~-~~~-~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~--~~~~ 228 (350)
T 3fkd_A 155 LNDHPDT--TFVLDQSYVSFTTEEVIRP-ADI-KGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFST--PWAV 228 (350)
T ss_dssp HHHCTTS--EEEEECTTTTSCSSCCCCG-GGG-TTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCC--TTCS
T ss_pred HHhCCCC--EEEEECchhhhccCcchhh-HHh-hcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhCC--CCCC
Confidence 8888765 9999999999887654322 222 34678999999999999999999999999999988876653 5788
Q ss_pred chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 348 STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 348 ~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
+.+.|.++..+|++.+++.+.+++.+ ++++.+.+.|+++ |+.+.++.++ |+|+.++.. +..+++++|++++||.
T Consensus 229 ~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~---~~~~l~~~L~~~~gi~ 303 (350)
T 3fkd_A 229 NALAIEAAKFILIHPAQFTLPIRKWQ-RNTVDFITALNRLDGVEVHPSGTT-FFLLRLKKG---TAAELKKYMLEEYNML 303 (350)
T ss_dssp CHHHHHHHHHHHHCTTTTCCCHHHHH-HHHHHHHHHHHHSTTEEECCCSSS-EEEEEESSS---CHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHhCHHHHHHHHHHHH-HHHHHHHHHHhcCCCcEECCCCCc-EEEEECCCC---CHHHHHHHHHHHCCEE
Confidence 99999999999998654555555544 8889999999987 8888777666 456766432 5788999998757999
Q ss_pred EECCCCCC
Q 013883 427 AIPTSVFY 434 (434)
Q Consensus 427 v~pG~~F~ 434 (434)
+.||+.|+
T Consensus 304 v~~g~~f~ 311 (350)
T 3fkd_A 304 IRDASNFR 311 (350)
T ss_dssp CEECTTST
T ss_pred EEeCccCC
Confidence 99998873
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=305.39 Aligned_cols=293 Identities=19% Similarity=0.262 Sum_probs=241.6
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
..+.|+|+.+.+.+++++.+.+++.+.+.. ...|+ ..|..+||++++++++ ++++ +|++|+|+++++.+++
T Consensus 15 ~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~-~~~y~-~~~~~~lr~~la~~~~------~~~~-~i~~t~G~~~~l~~~~ 85 (337)
T 3p1t_A 15 AAQAVCLAFNENPEAVEPRVQAAIAAAAAR-INRYP-FDAEPRVMRKLAEHFS------CPED-NLMLVRGIDECFDRIS 85 (337)
T ss_dssp CCCCEECSSCCCCSCCCHHHHHHHHHHGGG-TTSCC-TTHHHHHHHHHHHHHT------SCGG-GEEEESHHHHHHHHHH
T ss_pred CCCceEeeCCCCCCCCCHHHHHHHHHhhhh-hccCC-CCchHHHHHHHHHHhC------cCHH-HEEEeCCHHHHHHHHH
Confidence 346899999988889999999999887754 56785 4688999999999986 5666 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
..+ +||+|++++|+|.++...++..|++++.++.++ ++++|++.++++ .+++++++++||||||.+++.+++.+|
T Consensus 86 ~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~~~l~~l 160 (337)
T 3p1t_A 86 AEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTD-DLLLDPNDLAQV--SRDDCVVLANPSNPTGQALSAGELDQL 160 (337)
T ss_dssp HHS--TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCT-TSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred Hhc--CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCC-CCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCHHHHHHH
Confidence 988 999999999999999999999999999999875 688999999886 468999999999999999998875555
Q ss_pred HHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCC
Q 013883 268 ASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT 347 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~ 347 (434)
|+++++ +|+||+|.+|.+.+.. .....++++++.||||.+|++|+|+||+++++++++.++... ..++.
T Consensus 161 ---~~~~~~-~ivDea~~~~~~~~~~-----~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~--~~~~~ 229 (337)
T 3p1t_A 161 ---RQRAGK-LLIDETYVDYSSFRAR-----GLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQ--WFCNV 229 (337)
T ss_dssp ---HHHCSE-EEEECTTGGGSSCSSS-----CCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTS--CTTCS
T ss_pred ---HHhCCc-EEEECCChhhcccccc-----ccccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhc--CCCCC
Confidence 667786 5669999987644321 112357889999999999999999999999999998886653 35778
Q ss_pred chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEE
Q 013883 348 STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVA 427 (434)
Q Consensus 348 ~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v 427 (434)
+.+.|.++..+|++ .+++++.++++.++++.+.+.|+++|+.+.+++++|++|. .. +..++.+.| +++||.+
T Consensus 230 ~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~-~~-----~~~~~~~~l-~~~gi~v 301 (337)
T 3p1t_A 230 GTLDLHALEAALDN-DRAREAHIAKTLAQRRRVADALRGLGYRVASSEANFVLVE-NA-----AGERTLRFL-RERGIQV 301 (337)
T ss_dssp CHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSEEEEE-CT-----TTHHHHHHH-HHTTEEC
T ss_pred CHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHCcCEECCCCCeEEEEE-cC-----CHHHHHHHH-HHCCeEE
Confidence 88999999999987 3455666777888899999999999999888888866554 32 234555555 5669999
Q ss_pred ECCCCC
Q 013883 428 IPTSVF 433 (434)
Q Consensus 428 ~pG~~F 433 (434)
.||+.|
T Consensus 302 ~~g~~~ 307 (337)
T 3p1t_A 302 KDAGQF 307 (337)
T ss_dssp EEGGGG
T ss_pred EECccC
Confidence 999876
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=306.00 Aligned_cols=296 Identities=22% Similarity=0.343 Sum_probs=247.1
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcC---CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDG---KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
.+.|+|+.|.|++++++.+.+++.+++.+. ...|++. +..+||++++++++ ++++ +|++|+|+++++..
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~-~~~~lr~~la~~~g------~~~~-~i~~t~g~~~al~~ 97 (360)
T 3hdo_A 26 ASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSA-SSQKLREVAGELYG------FDPS-WIIMANGSDEVLNN 97 (360)
T ss_dssp TTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCS-SCHHHHHHHHHHHT------CCGG-GEEEESSHHHHHHH
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCC-chHHHHHHHHHHhC------cCcc-eEEEcCCHHHHHHH
Confidence 368999999999999999999999998775 5678765 56899999999985 6677 89999999999999
Q ss_pred HHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHH
Q 013883 186 TILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 186 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
++.+++++||+|++++|+|.++...++..|++++.++.++ ++.+ +.+++.+ +++++++++|+||||.+++.++
T Consensus 98 ~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~--~~l~~~~--~~~~v~i~~p~nptG~~~~~~~-- 170 (360)
T 3hdo_A 98 LIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTG-DFRI--AGFPERY--EGKVFFLTTPNAPLGPSFPLEY-- 170 (360)
T ss_dssp HHHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCT-TSSB--TTCCSSB--CSSEEEEESSCTTTCCCCCHHH--
T ss_pred HHHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCC-CCCH--HHHHhhc--CCCEEEEeCCCCCCCCCcCHHH--
Confidence 9999999999999999999999999999999999999874 4444 4444433 4679999999999999998876
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcccc
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTF 345 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~ 345 (434)
|.++|+++|+++|+||+|.+|. +. ....+....++++++.||||.+|++|+|+||+++++++++.++.... .+
T Consensus 171 -l~~l~~~~~~~li~De~~~~~~--~~--~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--~~ 243 (360)
T 3hdo_A 171 -IDELARRCAGMLVLDETYAEFA--ES--NALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRD--HY 243 (360)
T ss_dssp -HHHHHHHBSSEEEEECTTGGGS--SC--CCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHSC--SC
T ss_pred -HHHHHHHCCCEEEEECChHhhC--Cc--chhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhCC--CC
Confidence 5556788999999999999863 22 11112223578899999999999999999999999999998887653 57
Q ss_pred CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCe
Q 013883 346 ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGV 425 (434)
Q Consensus 346 ~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV 425 (434)
+.+.+.+.++..+|++ .+++++.+++++++++.+.+.|++.|+.+.++.++ |+|+.+. + .+..++.++|.+ +||
T Consensus 244 ~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~--~-~~~~~l~~~l~~-~gi 317 (360)
T 3hdo_A 244 NLDRLAQAACVAALRD-QAYLSECCRRIRETREWFTTELRSIGYDVIPSQGN-YLFATPP--D-RDGKRVYDGLYA-RKV 317 (360)
T ss_dssp CSCHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCSSS-EEEEECT--T-CCHHHHHHHHHH-TTE
T ss_pred CCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHCCCEEcCCCcc-EEEEECC--C-CCHHHHHHHHHH-CCE
Confidence 8899999999999997 67889999999999999999999999998777666 4566653 2 257788888765 599
Q ss_pred EEECCCC
Q 013883 426 VAIPTSV 432 (434)
Q Consensus 426 ~v~pG~~ 432 (434)
.+.||..
T Consensus 318 ~v~~~~~ 324 (360)
T 3hdo_A 318 LVRHFSD 324 (360)
T ss_dssp ECBCCCS
T ss_pred EEEECCC
Confidence 9999763
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-38 Score=303.45 Aligned_cols=291 Identities=24% Similarity=0.316 Sum_probs=241.9
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHH-cCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIR-DGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~-~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
+.|+|+.|.+++++++.+.+++.+++. .....|+.. +..++|+++++++++. .++++ +|++++|+++++..+++
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~-~~~~lr~~la~~~~~~---~~~~~-~v~~~~G~~~al~~~~~ 94 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDS-PDEELIEKILSYLDTD---FLSKN-NVSVGNGADEIIYVMML 94 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCCS-SCHHHHHHHHHHHTCS---SCCGG-GEEEESSHHHHHHHHHH
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC-chHHHHHHHHHHcCCC---CCCHH-HEEEcCChHHHHHHHHH
Confidence 679999998888888999999988773 334668654 6899999999999744 45666 89999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
++ ||+|+++ |+|+++...++..|++++.+|+++ ++.+|++.+ +++++|++++||||||.+++.+++++|+
T Consensus 95 ~~---gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~~l~~l~ 164 (335)
T 1uu1_A 95 MF---DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLTK-DLRIPEVNV-----GEGDVVFIPNPNNPTGHVFEREEIERIL 164 (335)
T ss_dssp HS---SEEEECS-SSCHHHHHHHHHHTCEEEECCCCT-TSCCCCCCC-----CTTEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred Hh---CCcEEEC-CCcHHHHHHHHHcCCeEEEeccCC-CCCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 88 8999999 999999999999999999998864 577888776 5789999999999999999999988888
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCc
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~ 348 (434)
++| | ++|+||+|.++.++ +...+.+..++++++.||||.+|++|+|+||+++++++++.++.... .++.+
T Consensus 165 ~~~---~-~li~De~~~~~~~~----~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~--~~~~~ 234 (335)
T 1uu1_A 165 KTG---A-FVALDEAYYEFHGE----SYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRL--PFNVS 234 (335)
T ss_dssp HTT---C-EEEEECTTHHHHCC----CCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHSC--TTCSC
T ss_pred HhC---C-EEEEECcchhhcch----hHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhcC--CCCcC
Confidence 877 7 89999999987542 11222223568899999999999999999999999999988877653 46889
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 349 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
.+.|.++..+|++ .+++++.+++++++++.+.+.|++.|+.+.++. ++|+|++++. .+..+++++|++ +||.+.
T Consensus 235 ~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~---~~~~~~~~~l~~-~gi~v~ 308 (335)
T 1uu1_A 235 YVSQMFAKVALDH-REIFEERTKFIVEERERMKSALREMGYRITDSR-GNFVFVFMEK---EEKERLLEHLRT-KNVAVR 308 (335)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCC-SSEEEEECCT---HHHHHHHHHHHH-HTEEEE
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHCCcEEcCCC-CeEEEEECCC---CCHHHHHHHHHH-CCEEEE
Confidence 9999999999997 567888999999999999999988888765554 5578888742 246678888875 599998
Q ss_pred CCC
Q 013883 429 PTS 431 (434)
Q Consensus 429 pG~ 431 (434)
|+.
T Consensus 309 ~~~ 311 (335)
T 1uu1_A 309 SFR 311 (335)
T ss_dssp EET
T ss_pred ECC
Confidence 743
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-39 Score=323.06 Aligned_cols=296 Identities=14% Similarity=0.116 Sum_probs=247.5
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHH-cCCCC--CCCCC-C---cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIR-DGKNQ--YARGH-G---VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~-~~~~~--Y~~~~-G---~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
..|+|+.|.|++++++++.+++.+++. .+... |++.. | .++||+++++++++..+..++++ +|++|+|++++
T Consensus 57 ~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~-~iv~t~G~~~a 135 (427)
T 2hox_A 57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDR-YIVFGVGVTQL 135 (427)
T ss_dssp CCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTC-EEEEESHHHHH
T ss_pred ceEEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCC-EEEEeCCHHHH
Confidence 679999999998888888888887763 33333 99888 9 99999999999998777777888 89999999999
Q ss_pred HHHHHHHc--------cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCC
Q 013883 183 IAATILGL--------INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNP 254 (434)
Q Consensus 183 i~~~~~~l--------~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NP 254 (434)
+.+++.++ +++||+|+++.|+|..+...++..|++++.+ .+|++.|++++++++++|++++||||
T Consensus 136 l~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~-------~~d~~~l~~~~~~~~k~v~l~~p~NP 208 (427)
T 2hox_A 136 IHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVW-------AGNAANYVNVSNPEQYIEMVTSPNNP 208 (427)
T ss_dssp HHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEE-------EEEGGGGTTCSCGGGEEEEEESSCTT
T ss_pred HHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeeee-------cCCHHHHHHhhcCCceEEEEcCCCCC
Confidence 99999999 9999999999999999999999999987643 35678898888888999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEe-ChhhH
Q 013883 255 TGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA-PPHLT 333 (434)
Q Consensus 255 TG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~-~~~~~ 333 (434)
||.+++ +. ++ ++..|+|++|.+ ...++..+. .+++++++||||.+|++|+|+||+++ +++++
T Consensus 209 tG~~~~-~~-------l~--~~~~i~d~~~~~-----~~~s~~~~~--~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~ 271 (427)
T 2hox_A 209 EGLLRH-AV-------IK--GCKSIYDMVYYW-----PHYTPIKYK--ADEDILLFTMSKFTGHSGSRFGWALIKDESVY 271 (427)
T ss_dssp TCCCCC-CS-------ST--TCEEEEECTTCS-----TTTSCCCSC--BCCSEEEEEHHHHTSCGGGCCEEEEECCHHHH
T ss_pred cccccH-HH-------Hc--CCCEEEeecccC-----CCCCccccC--CCceEEEEeChhcCCCCCceEEEEEECCHHHH
Confidence 999999 42 22 567888887742 233444443 57899999999999999999999999 58999
Q ss_pred HHHHHHhhccccCCchHHHHHHHHHHhCC-----------hHHHHHHHHHHHHHHHHHHHHhhhC-CCEe----------
Q 013883 334 WGVRQAHSFLTFATSTPMQWAATAALRAP-----------ETYYEELKRDYSAKKAILVEGLNAV-GFKV---------- 391 (434)
Q Consensus 334 ~~l~~~~~~~~~~~~~~~q~a~~~~L~~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~---------- 391 (434)
++++..+.....+++.+.|.++..+|++. +++++++++.++++++.+.+.|++. |+.+
T Consensus 272 ~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~ 351 (427)
T 2hox_A 272 NNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCN 351 (427)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEET
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccc
Confidence 99998887777889999999999999863 3466778899999999999999987 6554
Q ss_pred ----ecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 392 ----FPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 392 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
..+++++|+|+++.. +..+++++|++++||.++||+.|+
T Consensus 352 ~~~~~~p~~g~f~~~~~~~----~~~~~~~~ll~~~gI~v~pg~~f~ 394 (427)
T 2hox_A 352 YFRRMRPPSPSYAWVKCEW----EEDKDCYQTFQNGRINTQNGVGFE 394 (427)
T ss_dssp TTTEEECCCCSEEEEEECS----GGGCSHHHHHHHTTEECEEGGGGT
T ss_pred cccccCCCCceEEEEECCC----cHHHHHHHHHHHCCEEEcCCCccC
Confidence 356679999999853 355688888877899999998773
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-36 Score=296.09 Aligned_cols=302 Identities=15% Similarity=0.128 Sum_probs=244.5
Q ss_pred CeeEeCCCCC-CCCCcHHHHHHHHHHHHcCC---CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 110 GAINLGQGFP-NFDGPDFVKDAAIQAIRDGK---NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 110 ~~i~l~~g~p-~~~~~~~v~~~~~~~~~~~~---~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
+.|||+.|.| ++++++.+.+++.+++.+.. ..|.+..|..++++++++++.+.+|. + ++++++|+++++..
T Consensus 44 ~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~----~-~v~~~~ggt~a~~~ 118 (398)
T 3a2b_A 44 RVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGK----E-AAILFSTGFQSNLG 118 (398)
T ss_dssp EEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC----S-EEEEESSHHHHHHH
T ss_pred eEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC----C-cEEEECCHHHHHHH
Confidence 5799999987 77688899999988876532 34566778889999999999888774 4 79999999999999
Q ss_pred HHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc----CCcEEEecCCCCCcccCCCH
Q 013883 186 TILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK----NTRAILMNTPHNPTGKMFTR 261 (434)
Q Consensus 186 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~----~~~~i~~~~p~NPTG~~~~~ 261 (434)
++.+++++||.|++++|+|..+...+...|++++.+|. +|++.+++++++ ++++|++++|+||||.+++
T Consensus 119 ~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~------~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~- 191 (398)
T 3a2b_A 119 PLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH------NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN- 191 (398)
T ss_dssp HHHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT------TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC-
T ss_pred HHHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC------CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccC-
Confidence 99999999999999999999999999999999999886 479999999876 7899999999999999986
Q ss_pred HHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCc-eEEEccCChhhccccceeeeEEeChhhHHHHHHH-
Q 013883 262 EELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYER-TVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA- 339 (434)
Q Consensus 262 e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~-~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~- 339 (434)
+++|+++|++||+++|+||+|..+.++.....+....+..++ ++++.||||.++++| ||+++++++++.++..
T Consensus 192 --~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~ 266 (398)
T 3a2b_A 192 --LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNA 266 (398)
T ss_dssp --HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHC
T ss_pred --HHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC---cEEEeCHHHHHHHHHhc
Confidence 677999999999999999999988765323333222122345 699999999999778 9999999999888774
Q ss_pred hhccccCCchHHHH-HHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHH
Q 013883 340 HSFLTFATSTPMQW-AATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEY 418 (434)
Q Consensus 340 ~~~~~~~~~~~~q~-a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (434)
......+.+.+.|. ++..+|+. .+++++++++++++++.+.+.|++.|+++.++.+ +++|+.+.. + .+..+++++
T Consensus 267 ~~~~~~~~~~~~~~a~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~g-~~~~~~~~~-~-~~~~~l~~~ 342 (398)
T 3a2b_A 267 RSVMFSASMTPASVASTLKALEI-IQNEPEHIEKLWKNTDYAKAQLLDHGFDLGATES-PILPIFIRS-N-EKTFWVTKM 342 (398)
T ss_dssp HHHHSSBCCCHHHHHHHHHHHHH-HHHCTHHHHHHHHHHHHHHHHHHHTTCCBCSCCS-SEEEEECCC-H-HHHHHHHHH
T ss_pred ccceecCCCCHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC-CEEEEEcCC-H-HHHHHHHHH
Confidence 33344455666666 45577775 3456678899999999999999999988877765 577777632 1 135678888
Q ss_pred HHHhcCeEEECCCCC
Q 013883 419 LIKEVGVVAIPTSVF 433 (434)
Q Consensus 419 Ll~~~GV~v~pG~~F 433 (434)
|+++ ||.+.||..|
T Consensus 343 l~~~-gi~v~~~~~~ 356 (398)
T 3a2b_A 343 LQDD-GVFVNPVVSP 356 (398)
T ss_dssp HHHT-TEECEEECTT
T ss_pred HHHC-CcEEEeeCCC
Confidence 8877 9999999876
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=269.58 Aligned_cols=297 Identities=11% Similarity=0.074 Sum_probs=227.9
Q ss_pred CeeEeCCCCC-CCCCcHHHHHHHHHHHHc-CC----CCC--CCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 110 GAINLGQGFP-NFDGPDFVKDAAIQAIRD-GK----NQY--ARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 110 ~~i~l~~g~p-~~~~~~~v~~~~~~~~~~-~~----~~Y--~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
..|||+.|.+ ++++++.+.+++.+++.+ +. ..| ....+..+||++++++++ ++ + .|++++| ++
T Consensus 40 ~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g------~~-~-~i~~~sG-t~ 110 (384)
T 1bs0_A 40 QYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG------YS-R-ALLFISG-FA 110 (384)
T ss_dssp EEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT------CS-E-EEEESCH-HH
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC------CC-c-EEEeCCc-HH
Confidence 5799999864 666788899999888765 21 223 334567789999998885 22 3 5666666 89
Q ss_pred HHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccC---CcEEEecCCCCCcccC
Q 013883 182 AIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKN---TRAILMNTPHNPTGKM 258 (434)
Q Consensus 182 ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~---~~~i~~~~p~NPTG~~ 258 (434)
++..++.+++++||.|+++.|+|..+...+...|++++.+|. .|++.+++++++. +++|++++||||||.+
T Consensus 111 a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~ 184 (384)
T 1bs0_A 111 ANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH------NDVTHLARLLASPCPGQQMVVTEGVFSMDGDS 184 (384)
T ss_dssp HHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT------TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCB
T ss_pred HHHHHHHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC------CCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCc
Confidence 999999999999999999999999999999999999998874 3789999988753 7788889999999999
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccc-cCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHH
Q 013883 259 FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISI-ASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVR 337 (434)
Q Consensus 259 ~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~-~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~ 337 (434)
++ +++|+++|++||+++|+||+|..+.++.....+ ..+. . +..+++.||||.+|++| ||+++++++++.++
T Consensus 185 ~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~-~~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~ 256 (384)
T 1bs0_A 185 AP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQK-V-KPELLVVTFGKGFGVSG---AAVLCSSTVADYLL 256 (384)
T ss_dssp CC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTT-C-CCSEEEEESSSTTSSCC---EEEEECHHHHHHHH
T ss_pred cC---HHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcC-C-CCcEEEeeccchhhccC---cEEEeCHHHHHHHH
Confidence 97 677999999999999999999876553111111 1121 1 23488999999999766 99999999988887
Q ss_pred HHhhc--cccCCchHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHH
Q 013883 338 QAHSF--LTFATSTPMQWAATAALRAPET-YYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIA 414 (434)
Q Consensus 338 ~~~~~--~~~~~~~~~q~a~~~~L~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (434)
..... .+.+.+.+.+.++..+|+..++ +.++.+++++++++.+.+.|+++|+++.++.++ ++|+.+.. + .+..+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~-~-~~~~~ 333 (384)
T 1bs0_A 257 QFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSA-IQPLIVGD-N-SRALQ 333 (384)
T ss_dssp HHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSCCSS-BCCEEEES-H-HHHHH
T ss_pred HhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCcccCCCCC-EEEEEeCC-H-HHHHH
Confidence 64321 2335778888888888875332 667888999999999999999999888765444 55666531 1 13567
Q ss_pred HHHHHHHhcCeEEECCCCC
Q 013883 415 FCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 415 ~~~~Ll~~~GV~v~pG~~F 433 (434)
++++|+++ ||.+.||..|
T Consensus 334 l~~~l~~~-gi~v~~~~~~ 351 (384)
T 1bs0_A 334 LAEKLRQQ-GCWVTAIRPP 351 (384)
T ss_dssp HHHHHHHT-TEECCEECTT
T ss_pred HHHHHHHC-CcEEEeecCC
Confidence 88888766 9999998755
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=273.39 Aligned_cols=299 Identities=15% Similarity=0.170 Sum_probs=230.4
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcC-------CCCCCC--CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDG-------KNQYAR--GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-------~~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~ 180 (434)
+.|+|+.|.++ +.++.+.+++.+++.+. ...|++ ..+..+++++++++++. . +++ +|++++|++
T Consensus 28 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~----~-~~~-~v~~~~g~t 100 (420)
T 1t3i_A 28 PLVYLDNAATS-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINA----R-SPR-EIVYTRNAT 100 (420)
T ss_dssp ECEECBTTTCC-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTC----S-CGG-GEEEESSHH
T ss_pred ceEEecCCccC-CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCC----C-CCC-eEEEcCChH
Confidence 37999999887 67788999998888652 123433 34667888888888761 1 456 899999999
Q ss_pred HHHHHHHHHc----cCCCCeEEEcCCCchh----HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCC
Q 013883 181 EAIAATILGL----INPGDEVILFAPFYDS----YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPH 252 (434)
Q Consensus 181 ~ai~~~~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~ 252 (434)
+++.+++.++ +++||+|++++|+|++ +...+...|++++.++.++ ++.+|++.+++++++++++|++++|+
T Consensus 101 ~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~ 179 (420)
T 1t3i_A 101 EAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE-QESFDLEHFKTLLSEKTKLVTVVHIS 179 (420)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT-TSSBCHHHHHHHCCTTEEEEEEESBC
T ss_pred HHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCC-CCCcCHHHHHHhhCCCceEEEEeCCc
Confidence 9999999999 8999999999999998 6677788999999999873 67799999999999899999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhh
Q 013883 253 NPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL 332 (434)
Q Consensus 253 NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~ 332 (434)
||||.+++ +++|.++|++||+++|+||+|..+... ..+.. .+.++++.|+||.+|.+| +||+++++++
T Consensus 180 nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~---~~~~~----~~~di~~~s~sK~~~~~g--~G~~~~~~~~ 247 (420)
T 1t3i_A 180 NTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHYP---LDVQL----IDCDWLVASGHKMCAPTG--IGFLYGKEEI 247 (420)
T ss_dssp TTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC---CCHHH----HTCSEEEEEGGGTTSCTT--CEEEEECHHH
T ss_pred ccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCcc---Cchhh----cCCCEEEEehhhhcCCCc--eEEEEEchHH
Confidence 99999997 677999999999999999999864321 11111 135689999999988777 9999999988
Q ss_pred HHHHHHHhhc--------------------cccCCchHHHHHHHH-HHhCCh-HHHHHHHHHHHHHHHHHHHHhhhC-CC
Q 013883 333 TWGVRQAHSF--------------------LTFATSTPMQWAATA-ALRAPE-TYYEELKRDYSAKKAILVEGLNAV-GF 389 (434)
Q Consensus 333 ~~~l~~~~~~--------------------~~~~~~~~~q~a~~~-~L~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~ 389 (434)
++.++..... ...+.+.+.+.++.. +|+... .++++++++++++++.+.+.|++. |+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 327 (420)
T 1t3i_A 248 LEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQL 327 (420)
T ss_dssp HHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred HhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 8776543321 113455666665544 454322 246778889999999999999987 88
Q ss_pred EeecCC------eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 390 KVFPSS------GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 390 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
++..+. ++++.| .+.. .+..++++.| +++||.+.||..|
T Consensus 328 ~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~l-~~~gi~v~~~~~~ 372 (420)
T 1t3i_A 328 RLYGPNPKHGDRAALASF-NVAG---LHASDVATMV-DQDGIAIRSGHHC 372 (420)
T ss_dssp EEESCCGGGSCBCSEEEE-EETT---BCHHHHHHHH-HTTTEECBCSCTT
T ss_pred EEeCCCccccccCCEEEE-EECC---CCHHHHHHHH-HHCCeEEeecccc
Confidence 887664 676655 4532 2466777666 5569999999644
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=268.08 Aligned_cols=297 Identities=16% Similarity=0.157 Sum_probs=223.5
Q ss_pred eEeCCCCCCCCCcHHHHHHHHHHHHcCC--CC------CCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 112 INLGQGFPNFDGPDFVKDAAIQAIRDGK--NQ------YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 112 i~l~~g~p~~~~~~~v~~~~~~~~~~~~--~~------Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
+.|..+... ++++.+.+++.+++.+.. .. |.+..+..+|+++++++++ ++++ +|++++|+++++
T Consensus 3 ~yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~-~v~~~~g~t~a~ 74 (384)
T 1eg5_A 3 VYFDNNATT-RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLG------VSPS-EIFFTSCATESI 74 (384)
T ss_dssp EECBTTTCC-CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHT------SCGG-GEEEESCHHHHH
T ss_pred EEEecCccC-CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcC------CCCC-eEEEECCHHHHH
Confidence 345555444 667889999988887521 00 1122345788888888885 5566 899999999999
Q ss_pred HHHHHHcc----CCCCeEEEcCCCchhHHHHH---HHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcc
Q 013883 184 AATILGLI----NPGDEVILFAPFYDSYEATL---SMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTG 256 (434)
Q Consensus 184 ~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG 256 (434)
..++.++. ++||+|++++|+|+++...+ ...|++++.++.++ ++.+|++.+++++++++++|++++|+||||
T Consensus 75 ~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~nptG 153 (384)
T 1eg5_A 75 NWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS-RGVVKLEELEKLVDEDTFLVSIMAANNEVG 153 (384)
T ss_dssp HHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT-TSCBCHHHHHHHCCTTEEEEEEESBCTTTC
T ss_pred HHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCC-CCccCHHHHHHHhCCCCeEEEEECCCCCcc
Confidence 99999997 79999999999999886655 77899999999874 678999999999998999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcC--cEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhh--
Q 013883 257 KMFTREELNVIASLCIEND--VLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL-- 332 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~~--~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~-- 332 (434)
.+++ +++|.++|++|| +++|+||+|.. +.....+ .. .+.++++.|+||.+|++| +||+++++++
T Consensus 154 ~~~~---~~~i~~l~~~~~~~~~li~Dea~~~---~~~~~~~---~~-~~~di~~~s~sK~~g~~G--~G~~~~~~~~~~ 221 (384)
T 1eg5_A 154 TIQP---VEDVTRIVKKKNKETLVHVDAVQTI---GKIPFSL---EK-LEVDYASFSAHKFHGPKG--VGITYIRKGVPI 221 (384)
T ss_dssp BBCC---HHHHHHHHHHHCTTCEEEEECTTTT---TTSCCCC---TT-TCCSEEEEEGGGGTSCTT--CEEEEECTTSCC
T ss_pred cccC---HHHHHHHHHhcCCceEEEEEhhhhc---CCcccCc---hh-cCCCEEEecHHHhcCCCc--eEEEEEcCCCcc
Confidence 9998 567889999999 99999999972 2222222 21 246789999999999878 8999999875
Q ss_pred HHHHHHH---hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCC-e--eEEEeeecCC
Q 013883 333 TWGVRQA---HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSS-G--TYFVVVDHTP 406 (434)
Q Consensus 333 ~~~l~~~---~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~--~~~~~~~~~~ 406 (434)
...+... .....++.+.+.+.++..+|+...+++++++++++++++.+.+.|++.|+++..+. + +.++++.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~- 300 (384)
T 1eg5_A 222 RPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFP- 300 (384)
T ss_dssp CCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECT-
T ss_pred ccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCcccCCCCEEEEEeC-
Confidence 2111110 11235677888898888888864457788899999999999999998888886542 2 223444443
Q ss_pred CCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 407 FGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 407 ~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+. +..+++++|. ++||.+.||..|
T Consensus 301 -~~-~~~~~~~~l~-~~gi~v~~g~~~ 324 (384)
T 1eg5_A 301 -NI-RGSTLQNLLS-GYGIYVSTSSAC 324 (384)
T ss_dssp -TC-CHHHHHHHHH-HTTEECBC----
T ss_pred -CC-CHHHHHHHHh-hCCeEEeccccc
Confidence 22 5778888875 569999999766
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-32 Score=271.22 Aligned_cols=284 Identities=20% Similarity=0.207 Sum_probs=218.2
Q ss_pred eEeCCCCCCCCCcHHHHHHHHHHHH-----cCCCCCCCCCCcH---HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 112 INLGQGFPNFDGPDFVKDAAIQAIR-----DGKNQYARGHGVP---EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 112 i~l~~g~p~~~~~~~v~~~~~~~~~-----~~~~~Y~~~~G~~---~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
.+++++.|+++.++.+.+++.++++ ...+.|+. .|.+ +|+++++++++ .+ ++++++|+++++
T Consensus 21 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~g--------~~-~~i~~~~g~~ai 90 (404)
T 1e5e_A 21 QFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLEK--------TE-ACVATSSGMGAI 90 (404)
T ss_dssp TTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHHT--------CS-EEEEESSHHHHH
T ss_pred CCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHhC--------CC-cEEEeCChHHHH
Confidence 4688899999998888777766654 23466877 5666 89999999885 23 577777778999
Q ss_pred HHHHHHccCCCCeEEEcCCCchhHHH----HHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCC
Q 013883 184 AATILGLINPGDEVILFAPFYDSYEA----TLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMF 259 (434)
Q Consensus 184 ~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~ 259 (434)
..++.+++++||+|++++|.|+.+.. .++..|++++.++.+ |++.+++++++++++|++++|+||||.++
T Consensus 91 ~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~~~t~~v~l~~p~NptG~v~ 164 (404)
T 1e5e_A 91 AATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA------IPGEVKKHMKPNTKIVYFETPANPTLKII 164 (404)
T ss_dssp HHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT------STTHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred HHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC------CHHHHHHhcCCCCcEEEEECCCCCCCccc
Confidence 99999999999999999999999888 788899999999875 78899999998999999999999999999
Q ss_pred CHHHHHHHHHHHHH-cCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccccee-eeEEeChhhHH-HH
Q 013883 260 TREELNVIASLCIE-NDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKI-GWAIAPPHLTW-GV 336 (434)
Q Consensus 260 ~~e~l~~i~~la~~-~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~-G~~~~~~~~~~-~l 336 (434)
+ +++|+++|++ +|+++|+||+|..+.+.. .+ . .++++++.|+||.++++|+|+ ||+++++++++ .+
T Consensus 165 ~---l~~i~~la~~~~~~~li~De~~~~~~~~~---~~-~----~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l 233 (404)
T 1e5e_A 165 D---MERVCKDAHSQEGVLVIADNTFCSPMITN---PV-D----FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIR 233 (404)
T ss_dssp C---HHHHHHHHHTSTTCEEEEECTTTCTTTCC---GG-G----GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHH
T ss_pred C---HHHHHHHHHhhcCCEEEEECCCchhhhCC---cc-c----cCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHH
Confidence 5 7889999999 999999999999876531 11 1 357899999999999999998 99999999887 77
Q ss_pred HHHhhcc-ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC---------------CCEeecC----Ce
Q 013883 337 RQAHSFL-TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV---------------GFKVFPS----SG 396 (434)
Q Consensus 337 ~~~~~~~-~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------------g~~~~~~----~~ 396 (434)
+...... ..+.+.+.+.++..+|+... ...++..++.+.+.+.|++. |+++.++ .+
T Consensus 234 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g 309 (404)
T 1e5e_A 234 MVGIKDITGSVISPHDAWLITRGLSTLN----IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYG 309 (404)
T ss_dssp HTCCCCCCCCCCCHHHHHHHHHHHTTHH----HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCC
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhHhHHH----HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCc
Confidence 7665544 45678888999888898632 22333344444444444433 2233333 38
Q ss_pred eEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 397 TYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+|+.| ++.. ..+.+.+++++.|| +.+|..|
T Consensus 310 ~~~~~-~~~~-----~~~~~~~~l~~~~i-~~~~~s~ 339 (404)
T 1e5e_A 310 SMITF-ILKS-----GFEGAKKLLDNLKL-ITLAVSL 339 (404)
T ss_dssp SEEEE-EETT-----HHHHHHHHHHTCSS-SEESSCC
T ss_pred eEEEE-EeCC-----CHHHHHHHHHhCCC-ceeccCC
Confidence 88887 6632 33456667788899 5665433
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=270.83 Aligned_cols=298 Identities=13% Similarity=0.146 Sum_probs=226.4
Q ss_pred CeeEeCCCCC-CCCCcHHHHHHHHHHHHcCCC-----CC--CCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 110 GAINLGQGFP-NFDGPDFVKDAAIQAIRDGKN-----QY--ARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 110 ~~i~l~~g~p-~~~~~~~v~~~~~~~~~~~~~-----~Y--~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
..|||+.|.| ++.+++.+.+++.+++.+... .| ....+..+|++.++++++ . ++ +|++++| ++
T Consensus 44 ~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~------~-~~-~i~~~sG-t~ 114 (399)
T 3tqx_A 44 EVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLG------T-DD-TILYSSC-FD 114 (399)
T ss_dssp EEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHT------C-SE-EEEESCH-HH
T ss_pred eEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHC------C-Cc-EEEECch-HH
Confidence 5799999965 445688899999888765211 11 122235678888887775 2 23 6777666 77
Q ss_pred HHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc------CCcEEEecCCCCCc
Q 013883 182 AIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK------NTRAILMNTPHNPT 255 (434)
Q Consensus 182 ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~i~~~~p~NPT 255 (434)
++..++.+++++||.|+++.|+|+.+...++..|++++.++.. |++.+++++++ ++++|++++|+|||
T Consensus 115 a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~~~~~~v~~~~~~npt 188 (399)
T 3tqx_A 115 ANGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKNN------AMGDLEAKLKEADEKGARFKLIATDGVFSMD 188 (399)
T ss_dssp HHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECTT------CTTHHHHHHHHHHTTTCSSEEEEEESEETTT
T ss_pred HHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCCC------CHHHHHHHHHhhhccCCCceEEEEeCCCCCC
Confidence 9999999999999999999999999999999999999998863 67788888766 78999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCC-CCCceEEEccCChhhccccceeeeEEeChhhHH
Q 013883 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPG-MYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTW 334 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~-~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~ 334 (434)
|.+++ +++|+++|++||+++|+||+|....++.....+....+ ..+.++++.||||.++ |.+.||+++++++++
T Consensus 189 G~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~--g~~gG~~~~~~~~~~ 263 (399)
T 3tqx_A 189 GIIAD---LKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALG--GASGGYTSGHKEIIE 263 (399)
T ss_dssp TEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSC--SSCCEEEEECHHHHH
T ss_pred CCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcc--cCceEEEEcCHHHHH
Confidence 99997 77899999999999999999964333333222222211 1345699999999998 445599999999998
Q ss_pred HHHHHhhc--cccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCH
Q 013883 335 GVRQAHSF--LTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETD 412 (434)
Q Consensus 335 ~l~~~~~~--~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (434)
.+...... ...+.+.+.+.++..+|+...++.++++++++++++.+.+.|++.|+++.++.+++ +|+.+.. ..+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~~~~~~--~~~~ 340 (399)
T 3tqx_A 264 WLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKLGFQLVPGNHPI-IPVMLGD--AQLA 340 (399)
T ss_dssp HHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSSE-EEEEEEC--HHHH
T ss_pred HHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCE-EEEEeCC--HHHH
Confidence 88765332 23356667777777777754356788999999999999999999999888777775 4555532 1135
Q ss_pred HHHHHHHHHhcCeEEECCC
Q 013883 413 IAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 413 ~~~~~~Ll~~~GV~v~pG~ 431 (434)
.+++++|+++ ||.+.|+.
T Consensus 341 ~~~~~~l~~~-gi~v~~~~ 358 (399)
T 3tqx_A 341 TNMADHLLQE-GIYVVGFS 358 (399)
T ss_dssp HHHHHHHHHT-TEECCEEC
T ss_pred HHHHHHHHHC-CCEEeeeC
Confidence 6888888775 99999864
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-32 Score=267.00 Aligned_cols=291 Identities=16% Similarity=0.114 Sum_probs=229.2
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcC
Q 013883 122 DGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFA 201 (434)
Q Consensus 122 ~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~ 201 (434)
+.++.+.+++.+.+. ..|.+. ..++++++++++.+.+|.+ ++.+|++|+|+++++..++.+++++||+|++++
T Consensus 44 ~~~~~v~~a~~~~~~---~~~~~~--~~~~~~~~~~~la~~~g~~--~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~ 116 (393)
T 1vjo_A 44 NAHPSVLQAMNVSPV---GHLDPA--FLALMDEIQSLLRYVWQTE--NPLTIAVSGTGTAAMEATIANAVEPGDVVLIGV 116 (393)
T ss_dssp CCCHHHHHHHSSCCC---CTTSHH--HHHHHHHHHHHHHHHHTCC--CSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCHHHHHHHhcccc---cccCHH--HHHHHHHHHHHHHHHhCCC--CCcEEEEeCchHHHHHHHHHhccCCCCEEEEEc
Confidence 445667666654432 245442 4678889999998888862 322699999999999999999999999999999
Q ss_pred CCchh--HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEE
Q 013883 202 PFYDS--YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLV 278 (434)
Q Consensus 202 p~y~~--~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~i 278 (434)
|+|++ +...++..|++++.++.++ ++.+|++.+++++++ ++++|++++|+||||.+++ +++|+++|+++|+++
T Consensus 117 ~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~l 192 (393)
T 1vjo_A 117 AGYFGNRLVDMAGRYGADVRTISKPW-GEVFSLEELRTALETHRPAILALVHAETSTGARQP---LEGVGELCREFGTLL 192 (393)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEE
T ss_pred CChhHHHHHHHHHHcCCceEEEecCC-CCCCCHHHHHHHHhhCCceEEEEeccCCCcceecc---HHHHHHHHHHcCCEE
Confidence 99999 8999999999999999975 677999999999988 8999999999999999986 677999999999999
Q ss_pred EEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHH----h--------------
Q 013883 279 FSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA----H-------------- 340 (434)
Q Consensus 279 I~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~----~-------------- 340 (434)
|+||+|.. +..... +. ..+.++++.|++|.++.+| |+||+++++++++.++.. .
T Consensus 193 i~Dea~~~---g~~~~~---~~-~~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (393)
T 1vjo_A 193 LVDTVTSL---GGVPIF---LD-AWGVDLAYSCSQKGLGCSP-GASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWG 264 (393)
T ss_dssp EEECTTTT---TTSCCC---TT-TTTCSEEECCSSSTTCSCS-SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHS
T ss_pred EEECCccc---cCcCCc---cc-ccCccEEEEcCcccccCCC-ceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhc
Confidence 99999982 211111 22 2356789999999998677 999999999988776432 0
Q ss_pred -hcccc-CCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCe---eEEEeeecCCCCCCCHHH
Q 013883 341 -SFLTF-ATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSG---TYFVVVDHTPFGHETDIA 414 (434)
Q Consensus 341 -~~~~~-~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~ 414 (434)
....+ +.+.+.+.++..+|+.. ++++++++++++++++.+.+.|++.|+++..+++ +.++++.++ .+. +..+
T Consensus 265 ~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 342 (393)
T 1vjo_A 265 SERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIP-DGV-DGKA 342 (393)
T ss_dssp TTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECC-TTC-CHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCcccCCccccCCcEEEEEcC-CCC-CHHH
Confidence 01233 67888898888888863 3357888999999999999999988988877664 234555552 222 5778
Q ss_pred HHHHHHHhcCeEEECCCCC
Q 013883 415 FCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 415 ~~~~Ll~~~GV~v~pG~~F 433 (434)
++++|++++||.+.||..|
T Consensus 343 ~~~~l~~~~gi~v~~g~~~ 361 (393)
T 1vjo_A 343 VARRLLNEHNIEVGGGLGE 361 (393)
T ss_dssp HHHHHHHHHCEECEECCGG
T ss_pred HHHHHHhhCCEEEecCccc
Confidence 9998887679999999765
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=263.23 Aligned_cols=289 Identities=18% Similarity=0.188 Sum_probs=228.5
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCC
Q 013883 123 GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAP 202 (434)
Q Consensus 123 ~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p 202 (434)
.++.+.+++.+.+. ..|.+. ..++++++++++.+.+|.+ +++ ++++++|+++++..++.+++++||+|++++|
T Consensus 31 ~~~~v~~a~~~~~~---~~~~~~--~~~~~~~~~~~la~~~g~~-~~~-~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~ 103 (386)
T 2dr1_A 31 CFPEVLEIMKVQMF---SHRSKE--YRKVHMDTVERLREFLEVE-KGE-VLLVPSSGTGIMEASIRNGVSKGGKVLVTII 103 (386)
T ss_dssp CCHHHHHHTTSCCC---CTTSHH--HHHHHHHHHHHHHHHHTCS-SSE-EEEESSCHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred CcHHHHHHHhcccc---cccCHH--HHHHHHHHHHHHHHHhCCC-CCc-EEEEeCChHHHHHHHHHHhhcCCCeEEEEcC
Confidence 35556655543322 245432 3688999999998888875 455 7999999999999999999999999999999
Q ss_pred Cchh--HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhc--ccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEE
Q 013883 203 FYDS--YEATLSMAGAKIKCITLRPPDFAIPIEELKSTI--SKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLV 278 (434)
Q Consensus 203 ~y~~--~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i--~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~i 278 (434)
+|++ +...+...|++++.++.++ ++.+|++.+++++ .+++++|++++|+||||.+.+ +++|+++|++||+++
T Consensus 104 ~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~l 179 (386)
T 2dr1_A 104 GAFGKRYKEVVESNGRKAVVLEYEP-GKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNP---LPELAKVAKEHDKLV 179 (386)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEE
T ss_pred CchhHHHHHHHHHhCCceEEEecCC-CCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCC---HHHHHHHHHHcCCeE
Confidence 9998 8888999999999999875 6779999999999 458999999999999999986 678999999999999
Q ss_pred EEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHH----------------HH--h
Q 013883 279 FSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVR----------------QA--H 340 (434)
Q Consensus 279 I~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~----------------~~--~ 340 (434)
|+||+|..+.+. .. +. ..+.++++.|+||.++.+ .++||+++++++++.++ .. .
T Consensus 180 i~D~a~~~~~~~---~~---~~-~~~~di~~~s~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (386)
T 2dr1_A 180 FVDAVSAMGGAD---IK---FD-KWGLDVVFSSSQKAFGVP-PGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEK 251 (386)
T ss_dssp EEECTTTBTTBC---CC---TT-TTTCSEEEEETTSTTCCC-SSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHH
T ss_pred EEEccccccCcc---cc---cc-ccCCcEEEEeccccccCC-CceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccC
Confidence 999999875432 11 21 235679999999999855 24999999999887662 22 2
Q ss_pred hccccCCchHHHHHHHHHHhCChHH--HHHHHHHHHHHHHHHHHHhhhCCCEeecCC---eeEEEeeecCCCCCCCHHHH
Q 013883 341 SFLTFATSTPMQWAATAALRAPETY--YEELKRDYSAKKAILVEGLNAVGFKVFPSS---GTYFVVVDHTPFGHETDIAF 415 (434)
Q Consensus 341 ~~~~~~~~~~~q~a~~~~L~~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 415 (434)
....++.+.+.+.++..+|+...++ +++++++++++++.+.+.|++.|+++..+. .+.++|+.++. +. +..++
T Consensus 252 ~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~ 329 (386)
T 2dr1_A 252 ESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTITAVLTPP-GI-KGDEV 329 (386)
T ss_dssp SSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTTCBCSSEEEEECCT-TC-CHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCccccCCceEEEEcCC-CC-CHHHH
Confidence 2445677888898888888764333 678899999999999999998888887664 25567777632 22 57789
Q ss_pred HHHHHHhcCeEEECCCCC
Q 013883 416 CEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 416 ~~~Ll~~~GV~v~pG~~F 433 (434)
+++|+++ ||.+.||..|
T Consensus 330 ~~~l~~~-gi~v~~~~~~ 346 (386)
T 2dr1_A 330 YEAMRKR-GFELAKGYGS 346 (386)
T ss_dssp HHHHHHT-TEECEECCGG
T ss_pred HHHHHHC-CeEEecCccc
Confidence 9999877 9999998643
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=263.46 Aligned_cols=299 Identities=16% Similarity=0.165 Sum_probs=229.3
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCC---CCC------CCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGK---NQY------ARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~---~~Y------~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~ 180 (434)
+.++|+.+.++ +.++.+.+++.+.+.+.. +.| .+..+..++|++++++++ .. +++ +|++++|++
T Consensus 23 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~----~~-~~~-~v~~~~g~t 95 (406)
T 1kmj_A 23 PLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN----AR-SAE-ELVFVRGTT 95 (406)
T ss_dssp ECEECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTT----CS-CGG-GEEEESSHH
T ss_pred ceEEecCCccC-CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcC----CC-CCC-eEEEeCChh
Confidence 47899999887 567788999988887532 111 233456778888888775 11 455 899999999
Q ss_pred HHHHHHHHHc----cCCCCeEEEcCCCchh----HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCC
Q 013883 181 EAIAATILGL----INPGDEVILFAPFYDS----YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPH 252 (434)
Q Consensus 181 ~ai~~~~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~ 252 (434)
+++.+++.++ +++||+|++++|+|++ +...++..|++++.++.++ ++.+|++.+++++++++++|++++|+
T Consensus 96 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~ 174 (406)
T 1kmj_A 96 EGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP-DGTLQLETLPTLFDEKTRLLAITHVS 174 (406)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT-TSCBCGGGHHHHCCTTEEEEEEESBC
T ss_pred HHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCC-CCCcCHHHHHHHhccCCeEEEEeCCC
Confidence 9999999999 8999999999999875 4455777899999999874 67799999999999899999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhh
Q 013883 253 NPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL 332 (434)
Q Consensus 253 NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~ 332 (434)
||||.+++ +++|+++|++||+++|+||+|..+.. ...+.. .+.++++.|++|.+|.+| +||+++++++
T Consensus 175 nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~---~~~~~~----~~~d~~~~s~~K~~g~~G--~G~~~~~~~~ 242 (406)
T 1kmj_A 175 NVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHH---PVDVQA----LDCDFYVFSGHKLYGPTG--IGILYVKEAL 242 (406)
T ss_dssp TTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHH----HTCSEEEEEGGGTTSCTT--CEEEEECHHH
T ss_pred ccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCC---CCcccc----cCCCEEEEEchhccCCCC--cEEEEEeHHH
Confidence 99999998 77899999999999999999986421 111111 246788999999999778 8999999988
Q ss_pred HHHHHHHhhc---------------------cccCCchHHHHHHH-HHHhCCh-HHHHHHHHHHHHHHHHHHHHhhhC-C
Q 013883 333 TWGVRQAHSF---------------------LTFATSTPMQWAAT-AALRAPE-TYYEELKRDYSAKKAILVEGLNAV-G 388 (434)
Q Consensus 333 ~~~l~~~~~~---------------------~~~~~~~~~q~a~~-~~L~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g 388 (434)
++.++..... ...+.+.+.+.++. .+++... .++++++++++++++.+.+.|+++ |
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 322 (406)
T 1kmj_A 243 LQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPD 322 (406)
T ss_dssp HHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred HhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8776543210 11334566666554 5555422 356778889999999999999987 8
Q ss_pred CEeecC--CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 389 FKVFPS--SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 389 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+++..+ .++++.| .+. +. +..++++.|. ++||.+.||..|
T Consensus 323 ~~~~~~~~~~~~~~~-~~~--~~-~~~~~~~~l~-~~gi~v~~g~~~ 364 (406)
T 1kmj_A 323 LTLYGPQNRLGVIAF-NLG--KH-HAYDVGSFLD-NYGIAVRTGHHC 364 (406)
T ss_dssp EEEESCTTCCSEEEE-EET--TC-CHHHHHHHHH-HTTEECEEECTT
T ss_pred eEEecCCCcCCEEEE-EEC--CC-CHHHHHHHHh-hCCcEEEecccc
Confidence 988887 7887776 443 22 4677887664 559999998754
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-31 Score=267.07 Aligned_cols=299 Identities=18% Similarity=0.142 Sum_probs=225.0
Q ss_pred CCeeEeCCCCC-CCCCcHHHHHHHHHHHHc-C--CCCCCCCCCc----HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH
Q 013883 109 HGAINLGQGFP-NFDGPDFVKDAAIQAIRD-G--KNQYARGHGV----PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180 (434)
Q Consensus 109 ~~~i~l~~g~p-~~~~~~~v~~~~~~~~~~-~--~~~Y~~~~G~----~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~ 180 (434)
...|||+.|.+ ++.+++.+.+++.+++.+ + ...|....|. .+|++.++++++ . + +.+++++++
T Consensus 64 ~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g----~----~-~~i~~~sGs 134 (427)
T 2w8t_A 64 KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYG----T----T-GAIVFSTGY 134 (427)
T ss_dssp EEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHT----C----S-EEEEESCHH
T ss_pred ceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhC----C----C-ceEEecCcH
Confidence 35789999964 656788899999988876 3 2234444454 566666666663 2 2 344445556
Q ss_pred HHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc----CCcEEEecCCCCCcc
Q 013883 181 EAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK----NTRAILMNTPHNPTG 256 (434)
Q Consensus 181 ~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~----~~~~i~~~~p~NPTG 256 (434)
+++..++.+++++||.|+++.|+|..+...+...|++++.++. .|++.|++++++ ++++|++++++||||
T Consensus 135 ~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~------~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG 208 (427)
T 2w8t_A 135 MANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH------NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLG 208 (427)
T ss_dssp HHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT------TCHHHHHHHHHTSCSSSCEEEEEESEETTTT
T ss_pred HHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC------CCHHHHHHHHHhccCCCCeEEEEcCCCCCCC
Confidence 7898899999999999999999999999999999999988874 489999999876 788999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccC-CCCCCCceEEEccCChhhccccceeeeEEeChhhHHH
Q 013883 257 KMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIAS-LPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG 335 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~-~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~ 335 (434)
.+++ +++|+++|++||+++|+||+|..+.++.....+.. +.-..+.++++.||||.+|++| ||+++++++++.
T Consensus 209 ~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~g---G~v~~~~~l~~~ 282 (427)
T 2w8t_A 209 DIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG---GFVVSNHPKFEA 282 (427)
T ss_dssp EECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSCC---EEEEECCTTGGG
T ss_pred CccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccCC---CEEEeCHHHHHH
Confidence 9997 77899999999999999999999877643333222 2112345899999999999776 999999998877
Q ss_pred HHHHhh--ccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEee-cC-CeeEEEeeecCCCCCCC
Q 013883 336 VRQAHS--FLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVF-PS-SGTYFVVVDHTPFGHET 411 (434)
Q Consensus 336 l~~~~~--~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~-~~~~~~~~~~~~~~~~~ 411 (434)
+..... ..+.+.+...+.++..+|+..+ .+++++++++++++++.+.|+++|+.+. ++ .++ ++|+.+.. ..+
T Consensus 283 l~~~~~~~~~~~~~~~~~~aa~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~-~~~~~~~~--~~~ 358 (427)
T 2w8t_A 283 VRLACRPYIFTASLPPSVVATATTSIRKLM-TAHEKRERLWSNARALHGGLKAMGFRLGTETCDSA-IVAVMLED--QEQ 358 (427)
T ss_dssp GGGTCHHHHSSCCCCHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHTCEESCSSCCSS-EEEEEESS--HHH
T ss_pred HHHhcccccccCCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCC-EEEEEECC--HHH
Confidence 755421 1234556666666667776422 2467788999999999999998899887 55 454 56676632 113
Q ss_pred HHHHHHHHHHhcCeEEECCCCC
Q 013883 412 DIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 412 ~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
..+++++|+++ ||.+.||..|
T Consensus 359 ~~~l~~~L~~~-Gi~v~~~~~~ 379 (427)
T 2w8t_A 359 AAMMWQALLDG-GLYVNMARPP 379 (427)
T ss_dssp HHHHHHHHHHT-TEECEEECTT
T ss_pred HHHHHHHHHHC-CeEEeeeCCC
Confidence 56788888776 9999998765
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-31 Score=265.15 Aligned_cols=299 Identities=16% Similarity=0.138 Sum_probs=227.9
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCC----C---CCCC-CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGK----N---QYAR-GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~----~---~Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
+.++|..+.+. +.++.+.+++.+++.+.. . .|.. ..+..+++++++++++ ++++ +|++++|+++
T Consensus 16 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g------~~~~-~v~~~~g~t~ 87 (390)
T 1elu_A 16 NKTYFNFGGQG-ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFN------VDPN-TITITDNVTT 87 (390)
T ss_dssp TSEECCTTTCC-CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTT------SCGG-GEEEESSHHH
T ss_pred CeEEecCCccC-CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcC------CCHH-HEEEeCChHH
Confidence 67888887644 456788888888776521 1 3433 2467788888888875 4566 8999999999
Q ss_pred HHHHHHHHc-cCCCCeEEEcCCCchhHHHH----HHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCc
Q 013883 182 AIAATILGL-INPGDEVILFAPFYDSYEAT----LSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPT 255 (434)
Q Consensus 182 ai~~~~~~l-~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPT 255 (434)
++.+++.++ +++||+|+++.|+|+++... ++..|++++.++.++ +++.+|++.+++++++++++|++++|+|||
T Consensus 88 a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~npt 167 (390)
T 1elu_A 88 GCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNT 167 (390)
T ss_dssp HHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTT
T ss_pred HHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCC
Confidence 999999999 89999999999999997654 466899999999864 468899999999999899999999999999
Q ss_pred ccCCCHHHHHHHHHHHH----HcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh
Q 013883 256 GKMFTREELNVIASLCI----ENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH 331 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~----~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~ 331 (434)
|.+++ +++|.++|+ +||+++|+||+|.... .... +. ..+.++++.|++|.+. +|.++||++++++
T Consensus 168 G~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~---~~~~---~~-~~~~d~~~~s~~K~~~-~~~g~G~~~~~~~ 236 (390)
T 1elu_A 168 GQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGS---LPLD---FS-RLEVDYYAFTGHKWFA-GPAGVGGLYIHGD 236 (390)
T ss_dssp CCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTT---BCCC---TT-TSCCSEEEEESSSTTC-CCTTCEEEEECTT
T ss_pred ceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCC---cCCC---hh-hcCCCEEEcccccccc-CCCceEEEEECHH
Confidence 99998 677889999 9999999999998421 1111 11 2345688999999443 5677999999998
Q ss_pred hHHHHHHH----------------------hhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhC
Q 013883 332 LTWGVRQA----------------------HSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 332 ~~~~l~~~----------------------~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (434)
+++.++.. ......+.+...+.++..+|+.. .+++++++++++++++.+.+.|+++
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 316 (390)
T 1elu_A 237 CLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQL 316 (390)
T ss_dssp TGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 87665432 12223445666666666666532 2247888999999999999999987
Q ss_pred -CCEee---cCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 388 -GFKVF---PSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 388 -g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
|+++. ++.++++.| ++.+ +. +..+++++|. ++||.+.||.
T Consensus 317 ~g~~~~~~~~~~~~~~~~-~~~~-~~-~~~~~~~~l~-~~gi~v~~~~ 360 (390)
T 1elu_A 317 PHVHCLATSAPQAGLVSF-TVDS-PL-GHRAIVQKLE-EQRIYLRTIA 360 (390)
T ss_dssp TTEEESCSSCCSSSEEEE-EECS-SS-CHHHHHHHHH-HTTEECEEET
T ss_pred CCcEEecCccccccEEEE-EcCC-CC-CHHHHHHHHH-HCCEEEEecC
Confidence 88887 346787766 6532 22 5778888885 4599999975
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-31 Score=264.56 Aligned_cols=297 Identities=17% Similarity=0.145 Sum_probs=226.7
Q ss_pred cCCeeEeCCCCCCCC--CcHHHHHHHHHHHHc-CC----CCCC--CCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCC
Q 013883 108 KHGAINLGQGFPNFD--GPDFVKDAAIQAIRD-GK----NQYA--RGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSG 178 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~--~~~~v~~~~~~~~~~-~~----~~Y~--~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G 178 (434)
+...|||+.|.| ++ +++.+.+++.+++.. +. ..|. ...+..+|+++++++++ .+ + +|++++|
T Consensus 44 g~~~id~~~~~~-~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g------~~-~-~i~~~sG 114 (401)
T 1fc4_A 44 GSHVINFCANNY-LGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLG------ME-D-AILYSSC 114 (401)
T ss_dssp SCEEEECCCSCT-TSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHT------CS-E-EEEESCH
T ss_pred CccEEEeeccCc-ccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhC------CC-c-EEEeCCh
Confidence 346899999965 43 588899999888765 21 1221 13456789999999884 33 4 6777666
Q ss_pred hHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc------CCcEEEecCCC
Q 013883 179 CTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK------NTRAILMNTPH 252 (434)
Q Consensus 179 ~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~i~~~~p~ 252 (434)
++++..++.+++++||.|+++.|+|..+...+...|++++.++. .|++.+++++++ ++++|++++||
T Consensus 115 -s~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~ 187 (401)
T 1fc4_A 115 -FDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN------NDMQELEARLKEAREAGARHVLIATDGVF 187 (401)
T ss_dssp -HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT------TCHHHHHHHHHHHHHTTCSSEEEEEESEE
T ss_pred -HHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC------CCHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 67888899999999999999999999998999999999998873 378999988875 78999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCC-cccc-CCCCc-cccCCCCCCCceEEEccCChhh-ccccceeeeEEe
Q 013883 253 NPTGKMFTREELNVIASLCIENDVLVFSDEVYD-KLAF-EMDHI-SIASLPGMYERTVTMNSLGKTF-SLTGWKIGWAIA 328 (434)
Q Consensus 253 NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~-~~~~-~~~~~-~~~~~~~~~~~~i~i~S~SK~~-g~~G~R~G~~~~ 328 (434)
||||.+++ +++|.++|++||+++|+||+|. ++.+ .+... ....+ ..+.++++.||||.+ |.+| ||+++
T Consensus 188 nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~--~~~~di~~~s~sK~~~~~~g---G~~~~ 259 (401)
T 1fc4_A 188 SMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDV--MGRVDIITGTLGKALGGASG---GYTAA 259 (401)
T ss_dssp TTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTC--TTCCSEEEEESSSTTCSSSC---EEEEE
T ss_pred CCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCC--CcCCcEEEecchhhccCCCC---EEEEc
Confidence 99999997 7789999999999999999995 7653 33221 11222 124579999999999 5454 99999
Q ss_pred ChhhHHHHHHHhhc--cccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCC
Q 013883 329 PPHLTWGVRQAHSF--LTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTP 406 (434)
Q Consensus 329 ~~~~~~~l~~~~~~--~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 406 (434)
++++++.+...... .+++.+.+.+.++..+|+..++ .++.+++++++++.+.+.|++.|+++.++ .+.++|+++..
T Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~ 337 (401)
T 1fc4_A 260 RKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEA-GSELRDRLWANARQFREQMSAAGFTLAGA-DHAIIPVMLGD 337 (401)
T ss_dssp CHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHTTCCBCCS-SSSEEEEEEEC
T ss_pred CHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHcCCcccCC-CCCEEEEEcCC
Confidence 99999888765421 2557888889888888875321 46778889999999999999989888754 44566777632
Q ss_pred CCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 407 FGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 407 ~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+ .+..+++++|.++ ||.+.||..|
T Consensus 338 -~-~~~~~l~~~l~~~-gi~v~~~~~~ 361 (401)
T 1fc4_A 338 -A-VVAQKFARELQKE-GIYVTGFFYP 361 (401)
T ss_dssp -H-HHHHHHHHHHHHT-TEECCEECTT
T ss_pred -h-HHHHHHHHHHHHC-CcEEeeecCC
Confidence 1 1356788888765 9999998754
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-31 Score=259.28 Aligned_cols=298 Identities=14% Similarity=0.095 Sum_probs=228.0
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
++.|+|+.+.+. ++++.+.+++.+++. .|.+..|..++++++++++.+.+| .+++ +|++++|+++++..++.
T Consensus 13 p~~i~l~~~~~~-~~~~~v~~a~~~~~~----~~~~~~g~~~~~~~~~~~l~~~~g--~~~~-~v~~~~g~t~a~~~~~~ 84 (359)
T 1svv_A 13 PKPYSFVNDYSV-GMHPKILDLMARDNM----TQHAGYGQDSHCAKAARLIGELLE--RPDA-DVHFISGGTQTNLIACS 84 (359)
T ss_dssp --CEECSCSCSS-CCCHHHHHHHHHHTT----CCCCSTTCSHHHHHHHHHHHHHHT--CTTS-EEEEESCHHHHHHHHHH
T ss_pred CeeEEecCCCcC-CCCHHHHHHHHHHHh----hccccccccHHHHHHHHHHHHHhC--CCCc-cEEEeCCchHHHHHHHH
Confidence 467999988776 677888888888764 377777888999999999998888 4466 89999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHH--HHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccC-------CcEEEecCCCCCcccCC
Q 013883 189 GLINPGDEVILFAPFYDSYEA--TLSMAGAKIKCITLRPPDFAIPIEELKSTISKN-------TRAILMNTPHNPTGKMF 259 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~--~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~-------~~~i~~~~p~NPTG~~~ 259 (434)
.++++||+|++++|+|+.+.. .++..|++++.+|.+ ++.+|++.++++++++ +++|++++| ||||.++
T Consensus 85 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~ 161 (359)
T 1svv_A 85 LALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP--DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQY 161 (359)
T ss_dssp HHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT--TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCC
T ss_pred HHhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC--CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceec
Confidence 999999999999999999987 588899999999975 6889999999999776 889999998 7999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHH
Q 013883 260 TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA 339 (434)
Q Consensus 260 ~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~ 339 (434)
+.+++++|+++|++||+++|+||+|.++.++........+.-.....++..|++|..+ ...+|++++++++++.++..
T Consensus 162 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~--~~~~g~l~~~~~~~~~~~~~ 239 (359)
T 1svv_A 162 TKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGG--MFGEALIILNDALKPNARHL 239 (359)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTC--SSCEEEEECSGGGCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCC--CCceEEEEEcccHHHHHHHH
Confidence 9999999999999999999999999655332211111100000112367788999744 34579999999888777654
Q ss_pred hh-c-cccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHH
Q 013883 340 HS-F-LTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCE 417 (434)
Q Consensus 340 ~~-~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (434)
.. . ..+..+.....++..+|++ . .+++++++++++++.+.+.|+..|+++..+.+++|+|+++. .++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 310 (359)
T 1svv_A 240 IKQRGALMAKGWLLGIQFEVLMKD-N-LFFELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPILE-------NTMIA 310 (359)
T ss_dssp HHHTTCCCTTTHHHHHHHHHHTST-T-HHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEECBEEE-------HHHHH
T ss_pred HhcCCcccccchhhHHHHHHHHhh-h-hHHHHHHHHHHHHHHHHHHhccCCeEEccCCccceEEEEcC-------HHHHH
Confidence 21 1 1122222333334445554 2 45778899999999999999656888887788888888762 47888
Q ss_pred HHHHhcCeEEE
Q 013883 418 YLIKEVGVVAI 428 (434)
Q Consensus 418 ~Ll~~~GV~v~ 428 (434)
+|++++||.+.
T Consensus 311 ~l~~~~gi~v~ 321 (359)
T 1svv_A 311 ELNNDFDMYTV 321 (359)
T ss_dssp HHTTTEECEEE
T ss_pred HHHHhcCEEEE
Confidence 88777699884
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=263.48 Aligned_cols=300 Identities=16% Similarity=0.140 Sum_probs=223.8
Q ss_pred CeeEeCCCCC-CCCCcHHHHHHHHHHHHc-CC------CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 110 GAINLGQGFP-NFDGPDFVKDAAIQAIRD-GK------NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 110 ~~i~l~~g~p-~~~~~~~v~~~~~~~~~~-~~------~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
+.++|..+.. +++++|.+.+++.+++.+ .. ..|....+..++|++++++++ . ++ +|++++|++
T Consensus 47 ~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~-~~-~i~~~sG~~- 117 (401)
T 2bwn_A 47 DITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ------K-EA-ALVFSSAYN- 117 (401)
T ss_dssp EEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT------C-SE-EEEESCHHH-
T ss_pred cEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhC------C-Cc-EEEECCcHH-
Confidence 4578877643 565677899999888865 21 134454567889999998875 2 34 788888866
Q ss_pred HHHHHHHHcc--CCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc----cCCcEEEecCCCCCc
Q 013883 182 AIAATILGLI--NPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS----KNTRAILMNTPHNPT 255 (434)
Q Consensus 182 ai~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~----~~~~~i~~~~p~NPT 255 (434)
++..++..+. .+||+|+++.|+|+.+...++..|++++.++.+ |++.+++.++ +++++|++++|+|||
T Consensus 118 a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~le~~l~~~~~~~~~~v~~~~~~npt 191 (401)
T 2bwn_A 118 ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN------DVAHLRELIAADDPAAPKLIAFESVYSMD 191 (401)
T ss_dssp HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT------CHHHHHHHHHHSCTTSCEEEEEESBCTTT
T ss_pred HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC------CHHHHHHHHHhhccCCceEEEEecCcCCC
Confidence 7776666553 589999999999999999999999999999864 6888888876 578999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCC-CCceEEEccCChhhccccceeeeEEeChhhHH
Q 013883 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM-YERTVTMNSLGKTFSLTGWKIGWAIAPPHLTW 334 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~-~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~ 334 (434)
|.+++ +++|+++|++||+++|+||+|....++.....+....+. .+.+++++||||.+|++| ||+++++++++
T Consensus 192 G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G---G~~~~~~~~~~ 265 (401)
T 2bwn_A 192 GDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAASARMVD 265 (401)
T ss_dssp CCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEECHHHHH
T ss_pred CCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC---CEEecCHHHHH
Confidence 99997 677999999999999999999965554322222111111 124688999999999888 99999999888
Q ss_pred HHHHHhhcc--ccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCC
Q 013883 335 GVRQAHSFL--TFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHET 411 (434)
Q Consensus 335 ~l~~~~~~~--~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (434)
.++...... ..+.+.+.+.++..+|+.. ...+++++++++++++.+.+.|++.|+++.++.++ ++|+.+.. + .+
T Consensus 266 ~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~-~-~~ 342 (401)
T 2bwn_A 266 AVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSH-IVPVVIGD-P-VH 342 (401)
T ss_dssp HHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSS-CEEEECCC-H-HH
T ss_pred HHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCC-eEEEEeCC-h-HH
Confidence 876543221 2233457777777777642 22357788899999999999998888888877777 56666532 1 13
Q ss_pred HHHHHHHHHHhcCeEEECCCCC
Q 013883 412 DIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 412 ~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
..+++++|++++||.+.||..|
T Consensus 343 ~~~~~~~L~~~~gi~v~~~~~~ 364 (401)
T 2bwn_A 343 TKAVSDMLLSDYGVYVQPINFP 364 (401)
T ss_dssp HHHHHHHHHHHHCEECCEECTT
T ss_pred HHHHHHHHHhcCCEEEeecCCC
Confidence 5678888876679999987654
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-32 Score=265.08 Aligned_cols=291 Identities=15% Similarity=0.108 Sum_probs=220.1
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCC---------CCCCCCCCcHHHHHH-HHHHHHhhcCCCCCCCCcEEEcCC
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGK---------NQYARGHGVPEFNSA-IASRFKKDSGLEVDPEKEVTVTSG 178 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~---------~~Y~~~~G~~~lr~~-ia~~l~~~~g~~~~~~~~i~~t~G 178 (434)
++.++|..|.+..++++.+.+++.+.+.... ..|.+..+..+++++ ++++++ .+ +|++++|
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~--------~~-~v~~~~g 77 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG--------CD-VARVTNG 77 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT--------SS-EEEEESS
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcC--------CC-EEEEeCC
Confidence 3678888876666778889998888765431 234566788999999 999876 23 7999999
Q ss_pred hHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEE--cCCCCCCCCHHHHHhhcc-----cCCcEEEecCC
Q 013883 179 CTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCIT--LRPPDFAIPIEELKSTIS-----KNTRAILMNTP 251 (434)
Q Consensus 179 ~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~--~~~~~~~~d~~~l~~~i~-----~~~~~i~~~~p 251 (434)
+++++..++.+++++||+|++++|+|+++...+...|++++.++ .++ ++.+|++.++++++ +++++|++++|
T Consensus 78 ~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~ 156 (371)
T 2e7j_A 78 AREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYP-DYAITPENFAQTIEETKKRGEVVLALITYP 156 (371)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTT-TCCCCHHHHHHHHHHHTTTSCEEEEEEESS
T ss_pred hHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeecccCC-CCCcCHHHHHHHHHhhcccCCeEEEEEECC
Confidence 99999999999999999999999999999999999999999999 654 68899999999998 68899999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh
Q 013883 252 HNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH 331 (434)
Q Consensus 252 ~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~ 331 (434)
+||||.+++. ++|.++|++||+++|+||+|..+... ..+..+ +..+++.|+||.++ .|.|+||++++++
T Consensus 157 ~nptG~~~~~---~~i~~~~~~~~~~li~D~a~~~~~~~---~~~~~~----~~di~~~s~sK~~~-~~~~~G~~~~~~~ 225 (371)
T 2e7j_A 157 DGNYGNLPDV---KKIAKVCSEYDVPLLVNGAYAIGRMP---VSLKEI----GADFIVGSGHKSMA-ASGPIGVMGMKEE 225 (371)
T ss_dssp CTTTCCCCCH---HHHHHHHHTTTCCEEEECTTTBTTBC---CCHHHH----TCSEEEEEHHHHSS-CCSSCEEEEECTT
T ss_pred CCCCcccCCH---HHHHHHHHHcCCeEEEECccccCCCC---CChhhc----CCCEEEecCCcCCC-CCCCcEEEEEech
Confidence 9999999974 77899999999999999999985432 122221 23489999999998 4569999999998
Q ss_pred hHHH-HHHHhh--cc-----ccCCchHHHHHHHHHHhCChHHHHHHHHHH--HHHHHHHHHHhhhCCCEeecCC--eeEE
Q 013883 332 LTWG-VRQAHS--FL-----TFATSTPMQWAATAALRAPETYYEELKRDY--SAKKAILVEGLNAVGFKVFPSS--GTYF 399 (434)
Q Consensus 332 ~~~~-l~~~~~--~~-----~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~--~~~~~~l~~~L~~~g~~~~~~~--~~~~ 399 (434)
+++. ++.... .. ..+.+...+.++..+++...+ +.++++ +++++.+.+.|++.|+++..+. .+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 302 (371)
T 2e7j_A 226 WAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE---RIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDL 302 (371)
T ss_dssp TTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH---HGGGHHHHHHHHHHHHHHHHHTTCEEESSSSCCSSE
T ss_pred hhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCcEEecCCCccCce
Confidence 8766 554332 11 234455555555566653221 556677 8888999999988899887663 2346
Q ss_pred EeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 400 VVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
+|+++. +..++.++|. ++||.+.|
T Consensus 303 ~~~~~~-----~~~~~~~~l~-~~gi~~~~ 326 (371)
T 2e7j_A 303 MFFHAE-----VLYEISKKAK-GGRFFLYR 326 (371)
T ss_dssp EEEECH-----HHHHHHHHSS-SGGGHHHH
T ss_pred EEEECC-----CHHHHHHHHH-HCCEEEEe
Confidence 777763 3667888776 56998876
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=255.33 Aligned_cols=289 Identities=18% Similarity=0.242 Sum_probs=217.9
Q ss_pred CCCCCCCC-c---HHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc-
Q 013883 116 QGFPNFDG-P---DFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL- 190 (434)
Q Consensus 116 ~g~p~~~~-~---~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l- 190 (434)
.+.|++++ | +.+.+++.+++.++...|.+..+..+||++++++++ . ++ +|++++| ++++.+++.++
T Consensus 4 ~~~p~f~~~p~~~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~la~~~~------~-~~-~i~~~sG-t~al~~~l~~l~ 74 (388)
T 1b9h_A 4 RKAPEFPAWPQYDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHG------A-AH-ALAVTNG-THALELALQVMG 74 (388)
T ss_dssp -CCCCCCCSSCCCHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTT------C-SE-EEEESCH-HHHHHHHHHHTT
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHhC------C-Ce-EEEeCCH-HHHHHHHHHHcC
Confidence 35678876 6 889999999988755567777788999999999986 2 23 6888877 89999999999
Q ss_pred cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHH
Q 013883 191 INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASL 270 (434)
Q Consensus 191 ~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~l 270 (434)
+++||+|+++.|+|+.+...+...|++++.++++++++.+|++.+++++++++++|+ |+||||.+.+ +++|.++
T Consensus 75 ~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~---l~~i~~l 148 (388)
T 1b9h_A 75 VGPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMAD---MDALAKI 148 (388)
T ss_dssp CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHHHHH
T ss_pred CCCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCC---HHHHHHH
Confidence 899999999999999999999999999999999876688999999999988887776 9999999874 6778999
Q ss_pred HHHcCcEEEEcCcCCcc-ccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh-h--HHHHHHHhhcc---
Q 013883 271 CIENDVLVFSDEVYDKL-AFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH-L--TWGVRQAHSFL--- 343 (434)
Q Consensus 271 a~~~~~~iI~Deay~~~-~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~-~--~~~l~~~~~~~--- 343 (434)
|++||+++|+|++|..+ .+.+. .+..+ .++.+.||||..+++|.|+||++++++ + ++.++......
T Consensus 149 a~~~~~~li~D~a~~~g~~~~~~--~~~~~-----~~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (388)
T 1b9h_A 149 SADTGVPLLQDAAHAHGARWQGK--RVGEL-----DSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPR 221 (388)
T ss_dssp HHHHTCCBCEECTTCTTCEETTE--EGGGS-----SSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCT
T ss_pred HHHcCCEEEEecchhcCCccCCe--ecccc-----cceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999863 33321 22222 157889999777777889999999876 5 45554433210
Q ss_pred ------------ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeec------CCeeEEEeeec
Q 013883 344 ------------TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFP------SSGTYFVVVDH 404 (434)
Q Consensus 344 ------------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~------~~~~~~~~~~~ 404 (434)
++..+.+...++...+ +++++.+++++++++.+.+.|+++ |+.+.. +.+++++|+.+
T Consensus 222 ~~~~~~~~~~g~~~~~~~~~~a~~~~~~----~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (388)
T 1b9h_A 222 DDRRYFHKIAGSNMRLNEFSASVLRAQL----ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRI 297 (388)
T ss_dssp TCSSCCCCSCCCBCBCBHHHHHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEEC
T ss_pred cCccceeecccccCCcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEe
Confidence 1112333333322222 246667788888999999999987 787765 35567888887
Q ss_pred CCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 405 TPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 405 ~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
...+..+..++.++|.+ +||.+.+|.
T Consensus 298 ~~~~~~~~~~l~~~L~~-~gI~v~~~~ 323 (388)
T 1b9h_A 298 PGLTEERRNALVDRLVE-AGLPAFAAF 323 (388)
T ss_dssp TTCCHHHHHHHHHHHHH-TTCCEEECC
T ss_pred CCcCcccHHHHHHHHHH-CCCCccccc
Confidence 43211135678888875 599998863
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=258.02 Aligned_cols=298 Identities=13% Similarity=0.161 Sum_probs=220.7
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC--CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYAR--GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
..+++..| ..+.++.+.+++.+++.. .|.+ ..+..++++.++++++ .+++.+|++++|+++++.+++
T Consensus 19 ~~~~~~~g--~~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~g------~~~~~~i~~~~g~t~a~~~~~ 87 (393)
T 2huf_A 19 NKLLMGPG--PSNAPQRVLDAMSRPILG---HLHPETLKIMDDIKEGVRYLFQ------TNNIATFCLSASGHGGMEATL 87 (393)
T ss_dssp CCEECSSS--CCCCCHHHHHHTTSCCCC---TTSHHHHHHHHHHHHHHHHHHT------CCCSEEEEESSCHHHHHHHHH
T ss_pred CeEEecCC--CCCCCHHHHHHHHhhhcc---CCCHHHHHHHHHHHHHHHHHhC------CCCCcEEEEcCcHHHHHHHHH
Confidence 45666655 245677777766554432 2422 1245677777777765 334226999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhH--HHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSY--EATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREEL 264 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l 264 (434)
.+++++||+|++++|+|+++ ...++..|++++.+++++ ++.+|++.+++++++ ++++|++++|+||||.+++ +
T Consensus 88 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l 163 (393)
T 2huf_A 88 CNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKV-GQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQG---L 163 (393)
T ss_dssp HHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---C
T ss_pred HHHhCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCC-CCCCCHHHHHHHHhccCCcEEEEEccCCCccccCC---H
Confidence 99999999999999999884 334566899999999875 567999999999988 8999999999999999997 6
Q ss_pred HHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhh-ccccceeeeEEeChhhHHHHHHHh---
Q 013883 265 NVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTF-SLTGWKIGWAIAPPHLTWGVRQAH--- 340 (434)
Q Consensus 265 ~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-g~~G~R~G~~~~~~~~~~~l~~~~--- 340 (434)
++|+++|++||+++|+||+|... ..... +. ..+.++++.|++|.+ |++|+ ||+++++++++.++...
T Consensus 164 ~~i~~~~~~~~~~li~D~a~~~~---~~~~~---~~-~~~~d~~~~s~sK~l~g~~G~--G~~~~~~~~~~~~~~~~~~~ 234 (393)
T 2huf_A 164 EGVGALCHQHNCLLIVDTVASLG---GAPMF---MD-RWEIDAMYTGSQKVLGAPPGI--TPVSFSHRAVERYKRRNTKV 234 (393)
T ss_dssp TTHHHHHHHTTCEEEEECTTTBT---TBCCC---TT-TTTCSEEECCSSSTTCCCSSC--EEEEECHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHcCCEEEEEcccccC---CCCcc---hh-hcCccEEEECCCcccccCCCe--EEEEECHHHHHHHhhcCCCC
Confidence 78999999999999999998642 11111 21 234678899999975 56775 99999999988776541
Q ss_pred -h-------------------ccccCCchHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHhhhCCCEeecCC---e
Q 013883 341 -S-------------------FLTFATSTPMQWAATAALRAPET-YYEELKRDYSAKKAILVEGLNAVGFKVFPSS---G 396 (434)
Q Consensus 341 -~-------------------~~~~~~~~~~q~a~~~~L~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~ 396 (434)
. ....+.+...+.++..+|+...+ .+++.+++++++++.+.+.|+++|+.+..+. +
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 314 (393)
T 2huf_A 235 KVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRL 314 (393)
T ss_dssp SCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBC
T ss_pred ceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCccccC
Confidence 0 01124455566666667765333 3778889999999999999998888877653 3
Q ss_pred eEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 397 TYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
++++++.+.. +. +..+++++|++++||.+.||..|
T Consensus 315 ~~~~~~~~~~-~~-~~~~~~~~L~~~~gi~v~~g~~~ 349 (393)
T 2huf_A 315 STVTTIKVPQ-GV-DWLKAAQYAMKTYLVEISGGLGP 349 (393)
T ss_dssp TTEEEEECCT-TC-CHHHHHHHHHHHHCEECBCCCGG
T ss_pred CcEEEEEcCC-CC-CHHHHHHHHHHhCCEEEecCccc
Confidence 5466666632 22 57789998987779999998754
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-31 Score=262.36 Aligned_cols=294 Identities=18% Similarity=0.178 Sum_probs=219.2
Q ss_pred CeeEeCCCCCCCC---CcHHHHHHHHHHHHcCCCCC--CCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 110 GAINLGQGFPNFD---GPDFVKDAAIQAIRDGKNQY--ARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 110 ~~i~l~~g~p~~~---~~~~v~~~~~~~~~~~~~~Y--~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
..+||..+++..+ .+|.+.+++.+++.+..+.+ .+..-..++++.+++++ | ++ ++++++|+++++.
T Consensus 37 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g----~~-~v~~~~~gt~a~~ 107 (392)
T 3ruy_A 37 RYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLT----N----KE-MVLPMNTGAEAVE 107 (392)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHH----T----CS-EEEEESSHHHHHH
T ss_pred EEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhc----C----CC-EEEEeCcHHHHHH
Confidence 5789887755444 57889999998886533221 11223345566655554 3 55 8999999999999
Q ss_pred HHHHHccCC----------CCeEEEcCCCchhHHHHHHHcCCE-------------EEEEEcCCCCCCCCHHHHHhhccc
Q 013883 185 ATILGLINP----------GDEVILFAPFYDSYEATLSMAGAK-------------IKCITLRPPDFAIPIEELKSTISK 241 (434)
Q Consensus 185 ~~~~~l~~~----------gd~Vlv~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~d~~~l~~~i~~ 241 (434)
.++..+..+ +|+|++..|+|+++...+...+.. +..++.+ |++.+++++++
T Consensus 108 ~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~l~~~l~~ 181 (392)
T 3ruy_A 108 TAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG------DLEALKAAITP 181 (392)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT------CHHHHHHHCCT
T ss_pred HHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc------cHHHHHHHhcc
Confidence 999877644 689999999998776555444322 4444432 79999999998
Q ss_pred CCcEEEecCCCCCcccCCCHHH-HHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccc
Q 013883 242 NTRAILMNTPHNPTGKMFTREE-LNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTG 320 (434)
Q Consensus 242 ~~~~i~~~~p~NPTG~~~~~e~-l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G 320 (434)
++++|++++|+||||.+++.++ +++|+++|++||+++|+||+|.+|.+.+......... ...+ +.+|||.++ +|
T Consensus 182 ~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~-~~~d---~~~~SK~l~-gG 256 (392)
T 3ruy_A 182 NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDN-VTPD---MYILGKALG-GG 256 (392)
T ss_dssp TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGT-CCCS---EEEECGGGG-TT
T ss_pred CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccC-CCCC---EEEEchhhh-CC
Confidence 9999999999999999996555 9999999999999999999999887665543322221 1122 337899886 56
Q ss_pred -ceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC---CEeecCCe
Q 013883 321 -WKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG---FKVFPSSG 396 (434)
Q Consensus 321 -~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---~~~~~~~~ 396 (434)
+|+||+++++++++.+.......+++.+.+.+.++..+|+..++ ++.+++++++++.+.+.|++++ +...++.+
T Consensus 257 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g 334 (392)
T 3ruy_A 257 VFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEE--EKLTERSLQLGEKLVGQLKEIDNPMITEVRGKG 334 (392)
T ss_dssp TSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHTTCCCTTEEEEEEET
T ss_pred hhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence 99999999999887776666666788999999999999986332 6678889999999999999875 44555667
Q ss_pred eEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 397 TYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+++.|. +.. +..+++++|. ++||.+.||.
T Consensus 335 ~~~~~~-~~~----~~~~l~~~l~-~~gi~v~~~~ 363 (392)
T 3ruy_A 335 LFIGIE-LNE----PARPYCEQLK-AAGLLCKETH 363 (392)
T ss_dssp TEEEEE-ESS----CSHHHHHHHH-TTTEECCCBT
T ss_pred eEEEEE-Ecc----hHHHHHHHHH-HCCcEEecCC
Confidence 766554 533 4678888887 5699999985
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=260.81 Aligned_cols=291 Identities=15% Similarity=0.150 Sum_probs=217.8
Q ss_pred CeeEeCCCCC--CCC-CcHHHHHHHHHHHHcC---CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 110 GAINLGQGFP--NFD-GPDFVKDAAIQAIRDG---KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 110 ~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
..+||+.|.| .+. +++.+.+++.+++.+. ...|+ ..+..+|++++++++ |. ++ +|++++|+++++
T Consensus 29 ~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~l~~~la~~~----g~---~~-~v~~~~g~t~a~ 99 (375)
T 2eh6_A 29 EYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYE-NPWQEELAHKLVKHF----WT---EG-KVFFANSGTESV 99 (375)
T ss_dssp EEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBC-CHHHHHHHHHHHHTS----SS---CE-EEEEESSHHHHH
T ss_pred EEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccC-CHHHHHHHHHHHhhc----CC---CC-eEEEeCchHHHH
Confidence 5789988854 455 7888999998888653 23563 346678888888775 33 35 899999999999
Q ss_pred HHHHHH---cc---CCC-CeEEEcCCCchhHHHHHHHcCCE-------------EEEEEcCCCCCCCCHHHHHhhcccCC
Q 013883 184 AATILG---LI---NPG-DEVILFAPFYDSYEATLSMAGAK-------------IKCITLRPPDFAIPIEELKSTISKNT 243 (434)
Q Consensus 184 ~~~~~~---l~---~~g-d~Vlv~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~d~~~l~~~i~~~~ 243 (434)
.+++.. +. ++| |+|++++|+|+.+...+...+.. +..++. .|++.+++++++++
T Consensus 100 ~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~~ 173 (375)
T 2eh6_A 100 EAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL------NDIDSVYKLLDEET 173 (375)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT------TCHHHHHTTCCTTE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC------chHHHHHHHhcCCe
Confidence 999865 35 788 99999999999876655444322 333332 48999999998889
Q ss_pred cEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccce
Q 013883 244 RAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWK 322 (434)
Q Consensus 244 ~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R 322 (434)
++|++++|+||||.+ .+.+++++|+++|++||+++|+||+|.+|.+.+....+..+.. ..+++ ||||.++ +|+|
T Consensus 174 ~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~d~~---s~SK~~~-~g~~ 248 (375)
T 2eh6_A 174 AGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNL-KPDVI---ALAKGLG-GGVP 248 (375)
T ss_dssp EEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEE---EECGGGG-TTSC
T ss_pred EEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCC-CCCEE---EEccccc-CCCC
Confidence 999999999999998 5688899999999999999999999998755443222333221 12222 8899999 7999
Q ss_pred eeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEee
Q 013883 323 IGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVV 402 (434)
Q Consensus 323 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 402 (434)
+||+++++++++.++......+++.+.+.+.++..+|+..+ +.+++++++++.+.+.|++++....++ .++++|+
T Consensus 249 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~-~g~~~~~ 323 (375)
T 2eh6_A 249 IGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVE----KLLPHVREVGNYFKEKLKELGKGKVKG-RGLMLGL 323 (375)
T ss_dssp CEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTTSSEEEE-ETTEEEE
T ss_pred eEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCceE-EEEEEEE
Confidence 99999998877666543233466778888888888887522 667888889999999998887544444 4556777
Q ss_pred ecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 403 DHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 403 ~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
++.. +..+++++|++ +||.+.|+
T Consensus 324 ~~~~----~~~~~~~~l~~-~gi~~~~~ 346 (375)
T 2eh6_A 324 ELER----ECKDYVLKALE-KGLLINCT 346 (375)
T ss_dssp ECSS----CCHHHHHHHHH-TTEECEEE
T ss_pred EEcC----cHHHHHHHHHH-CCCEEecC
Confidence 7643 35678888875 69999985
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=256.89 Aligned_cols=289 Identities=15% Similarity=0.177 Sum_probs=218.1
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCCCC--CCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEE
Q 013883 121 FDGPDFVKDAAIQAIRDGKNQYARG--HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVI 198 (434)
Q Consensus 121 ~~~~~~v~~~~~~~~~~~~~~Y~~~--~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl 198 (434)
.+.++.+.+++.+.+. ..|.+. ....++|++++++++ .+++.+|++++|+++++..++.+++++||+|+
T Consensus 27 ~~~~~~v~~a~~~~~~---~~~~~~~~~~~~~l~~~la~~~~------~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl 97 (396)
T 2ch1_A 27 SNCSKRVLTAMTNTVL---SNFHAELFRTMDEVKDGLRYIFQ------TENRATMCVSGSAHAGMEAMLSNLLEEGDRVL 97 (396)
T ss_dssp CCCCHHHHHHTTSCCC---CTTCHHHHHHHHHHHHHHHHHHT------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEE
T ss_pred CCCCHHHHHHhccccc---cCCChhHHHHHHHHHHHHHHHhC------CCCCcEEEECCcHHHHHHHHHHHhcCCCCeEE
Confidence 4455666665543321 235432 125788888888886 33332699999999999999999999999999
Q ss_pred EcCCCchhHH--HHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcC
Q 013883 199 LFAPFYDSYE--ATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIEND 275 (434)
Q Consensus 199 v~~p~y~~~~--~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~ 275 (434)
+++|+|+.+. ..++..|++++.++.++ ++.+|++.+++++++ ++++|++++|+||||.+++ +++|+++|+++|
T Consensus 98 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~ 173 (396)
T 2ch1_A 98 IAVNGIWAERAVEMSERYGADVRTIEGPP-DRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP---LEGVGQICHQHD 173 (396)
T ss_dssp EEESSHHHHHHHHHHHHTTCEEEEEECCT-TSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHTT
T ss_pred EEcCCcccHHHHHHHHHcCCceEEecCCC-CCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecC---HHHHHHHHHHcC
Confidence 9999999985 47788999999999875 678999999999988 8999999999999999997 677999999999
Q ss_pred cEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHh---------------
Q 013883 276 VLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAH--------------- 340 (434)
Q Consensus 276 ~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~--------------- 340 (434)
+++|+||+|.. +..... +.. .+..+++.|++|.++ .+.++|++++++++++.+...+
T Consensus 174 ~~li~Dea~~~---g~~~~~---~~~-~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (396)
T 2ch1_A 174 CLLIVDAVASL---CGVPFY---MDK-WEIDAVYTGAQKVLG-APPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGN 245 (396)
T ss_dssp CEEEEECTTTB---TTBCCC---TTT-TTCCEEECCCC-CCC-CCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHH
T ss_pred CEEEEEccccc---cCCccc---hhh-cCcCEEEEcCCcccc-CCCCeEEEEECHHHHHhhhhccCcccceEechHHHHH
Confidence 99999999983 211112 211 223466789999876 4456799999998887664310
Q ss_pred --------hccccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCee----EEEeeecCCC
Q 013883 341 --------SFLTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGT----YFVVVDHTPF 407 (434)
Q Consensus 341 --------~~~~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~~~~~~ 407 (434)
.....+.+...+.++..+|+.. ++++++++++++++++.+.+.|+++|+++.+++++ .++++.++ .
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~ 324 (396)
T 2ch1_A 246 YWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIP-K 324 (396)
T ss_dssp HTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECC-T
T ss_pred hhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcC-C
Confidence 1123456777888888888763 34577889999999999999999889888877653 25666653 2
Q ss_pred CCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 408 GHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 408 ~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
+. +..+++++|++++||.+.||..
T Consensus 325 ~~-~~~~~~~~L~~~~gi~v~~g~~ 348 (396)
T 2ch1_A 325 GV-DWWKVSQYAMNNFSLEVQGGLG 348 (396)
T ss_dssp TC-CHHHHHHHHHHHHCBCCBCCCG
T ss_pred CC-CHHHHHHHHHHhCCEEEecCcc
Confidence 22 5778999998777999999864
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=257.12 Aligned_cols=297 Identities=13% Similarity=0.067 Sum_probs=219.6
Q ss_pred cCCeeEeCCC-CCCCCCcHHHHHHHHHHHHcC---CCCCCCCC----CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCCh
Q 013883 108 KHGAINLGQG-FPNFDGPDFVKDAAIQAIRDG---KNQYARGH----GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGC 179 (434)
Q Consensus 108 ~~~~i~l~~g-~p~~~~~~~v~~~~~~~~~~~---~~~Y~~~~----G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~ 179 (434)
+...+||+.+ +.++++++.+.+++.+++.+. ...|.... ...+++++++++++ .+..+++ +++
T Consensus 58 g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g--------~~~~i~~-~sG 128 (409)
T 3kki_A 58 SPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTG--------FDECLLS-QSG 128 (409)
T ss_dssp CTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHT--------CSEEEEE-SCH
T ss_pred CCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhC--------CCeEEEe-cch
Confidence 3457899876 456778899999999998762 12222222 34567777777764 2224555 455
Q ss_pred HHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccC
Q 013883 180 TEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKM 258 (434)
Q Consensus 180 ~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~ 258 (434)
++++..++.+++++||.|++++|+|..+...+...|++++.++. .|++++++++++ ++++|++++|+||||.+
T Consensus 129 t~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~le~~l~~~~~~~vi~~~~~nptG~~ 202 (409)
T 3kki_A 129 WNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH------NNCDHLRMLIQRHGPGIIVVDSIYSTLGTI 202 (409)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT------TCHHHHHHHHHHHCSCEEEEESBCTTTCCB
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC------CCHHHHHHHHHhcCCeEEEECCCCCCCCCc
Confidence 79999999999999999999999999999999999999988765 479999999986 58999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccC-CCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHH
Q 013883 259 FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIAS-LPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVR 337 (434)
Q Consensus 259 ~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~-~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~ 337 (434)
++ +++|+++|++||+++|+||+|..+.++........ +....+.++++.||||.++.+ .||+++++++++.+.
T Consensus 203 ~~---l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~---gg~v~~~~~~~~~~~ 276 (409)
T 3kki_A 203 AP---LAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR---AGAIWCNNEVNRCVP 276 (409)
T ss_dssp CC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS---CEEEEESSSGGGTHH
T ss_pred CC---HHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC---ceEEEECHHHHHHHH
Confidence 97 77899999999999999999998655432222111 111223458899999999955 499999999888776
Q ss_pred HHhhcc--ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHH
Q 013883 338 QAHSFL--TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAF 415 (434)
Q Consensus 338 ~~~~~~--~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (434)
...... ....+...+.++.++|+..++ .++++++++++++++.+.|+++|+.+. + .++++|+.+... .+..++
T Consensus 277 ~~~~~~~~~~~~~~~~~aa~~aal~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~-~-~~~~~~~~~~~~--~~~~~~ 351 (409)
T 3kki_A 277 FISYPAIFSSTLLPYEAAGLETTLEIIES-ADNRRQHLDRMARKLRIGLSQLGLTIR-S-ESQIIGLETGDE--RNTEKV 351 (409)
T ss_dssp HHCHHHHHSBCCCHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTTTCCCC-C-SSSEEEEEEESH--HHHHHH
T ss_pred HhCcCccccCCCcHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHcCCccC-C-CCCEEEEEeCCH--HHHHHH
Confidence 643322 223455566666667765332 267788999999999999999998876 3 455666665321 135578
Q ss_pred HHHHHHhcCeEEECCC
Q 013883 416 CEYLIKEVGVVAIPTS 431 (434)
Q Consensus 416 ~~~Ll~~~GV~v~pG~ 431 (434)
+++|+++ ||.+.|+.
T Consensus 352 ~~~L~~~-Gv~v~~~~ 366 (409)
T 3kki_A 352 RDYLESN-GVFGSVFC 366 (409)
T ss_dssp HHHHHHT-TEECEEEC
T ss_pred HHHHHHC-CceEeeeC
Confidence 8888776 99998753
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-30 Score=251.23 Aligned_cols=301 Identities=14% Similarity=0.146 Sum_probs=223.9
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC-C-CCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYAR-G-HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~-~-~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
++++|+.| | ...++.+.+++.+.+ .+.|+. . .+..++|++++++++ ...+++ ++++++|+++++..++
T Consensus 4 ~~~~~~~g-p-~~~~~~v~~a~~~~~---~~~~~~~~~~~~~~l~~~la~~~g----~~~~~~-~v~~~~g~t~a~~~~~ 73 (366)
T 1m32_A 4 NYLLLTPG-P-LTTSRTVKEAMLFDS---CTWDDDYNIGVVEQIRQQLTALAT----ASEGYT-SVLLQGSGSYAVEAVL 73 (366)
T ss_dssp -CEECSSS-S-CCCCHHHHHTTCCCC---CTTSHHHHTTTHHHHHHHHHHHHC----SSSSEE-EEEEESCHHHHHHHHH
T ss_pred ccccccCC-C-cCCCHHHHHHHhhhh---cCCCHHHHHHHHHHHHHHHHHHhC----CCCcCc-EEEEecChHHHHHHHH
Confidence 36899988 5 346777777765532 122321 1 577899999999885 112234 7999999999999999
Q ss_pred HHccCCCCeEEEcC-CCchh-HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc--CCcEEEecCCCCCcccCCCHHH
Q 013883 188 LGLINPGDEVILFA-PFYDS-YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK--NTRAILMNTPHNPTGKMFTREE 263 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~-p~y~~-~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~--~~~~i~~~~p~NPTG~~~~~e~ 263 (434)
.+++++||+|++.+ ++|+. +...+...|++++.++.++ ++.+|++.+++++++ ++++|++++|+||||.+++
T Consensus 74 ~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~--- 149 (366)
T 1m32_A 74 GSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE-VARPDVQAIDAILNADPTISHIAMVHSETTTGMLNP--- 149 (366)
T ss_dssp HHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT-TSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---
T ss_pred HHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecC---
Confidence 99999999988876 55554 6677888999999999874 677999999999976 5789999999999999997
Q ss_pred HHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHh---
Q 013883 264 LNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAH--- 340 (434)
Q Consensus 264 l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~--- 340 (434)
+++|.++|++||+++|+||+|..... ... +. ..+.++++.|++|.++ .+.++||+++++++++.++...
T Consensus 150 l~~i~~l~~~~~~~li~Dea~~~~~~---~~~---~~-~~~~di~~~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~~~~ 221 (366)
T 1m32_A 150 IDEVGALAHRYGKTYIVDAMSSFGGI---PMD---IA-ALHIDYLISSANKCIQ-GVPGFAFVIAREQKLAACKGHSRSL 221 (366)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTTTTS---CCC---TT-TTTCSEEEEESSSTTC-CCSSEEEEEEEHHHHTTCTTCCSCS
T ss_pred HHHHHHHHHHcCCEEEEECCccccCc---Ccc---cc-ccCccEEEecCccccc-CCCceEEEEECHHHHHhhcCCCCCc
Confidence 67899999999999999999985432 111 11 1245689999999874 3345799999988776543210
Q ss_pred ---------------hccccCCchHHHHHHHHHHhCChHH--HHHHHHHHHHHHHHHHHHhhhCCCEeecC---CeeEEE
Q 013883 341 ---------------SFLTFATSTPMQWAATAALRAPETY--YEELKRDYSAKKAILVEGLNAVGFKVFPS---SGTYFV 400 (434)
Q Consensus 341 ---------------~~~~~~~~~~~q~a~~~~L~~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~---~~~~~~ 400 (434)
....++.+...+.++..+|+...++ +++++++++++++.+.+.|+++|+.+..+ .+++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 301 (366)
T 1m32_A 222 SLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIIT 301 (366)
T ss_dssp TTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEE
T ss_pred cccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCchhcCceEE
Confidence 0112567777777788888764444 67788999999999999999888877654 366677
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 401 VVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
|+.++.....+..+++++|.++ ||.+.||..|
T Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~ 333 (366)
T 1m32_A 302 AFYSPEDPQYRFSEFYRRLKEQ-GFVIYPGKVS 333 (366)
T ss_dssp EEECCCCTTCCHHHHHHHHHHT-TEECEECCCS
T ss_pred EEEcCccCCCCHHHHHHHHHHC-CEEEECCcCC
Confidence 8876421012577898888766 9999998754
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=254.88 Aligned_cols=296 Identities=13% Similarity=0.062 Sum_probs=214.9
Q ss_pred eEeCCCCCCCCCcHHHHHHHHHHHHcCCCCC-CCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc
Q 013883 112 INLGQGFPNFDGPDFVKDAAIQAIRDGKNQY-ARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL 190 (434)
Q Consensus 112 i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y-~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l 190 (434)
+.|..+.| .+.++.+.+++.+.+.. +.| ....+..++|++++++++ .+++ +|++|+|+++++.+++.++
T Consensus 10 ~yl~~~~~-~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g------~~~~-~v~~t~g~t~a~~~~~~~~ 79 (392)
T 2z9v_A 10 VITLTAGP-VNAYPEVLRGLGRTVLY--DYDPAFQLLYEKVVDKAQKAMR------LSNK-PVILHGEPVLGLEAAAASL 79 (392)
T ss_dssp SEECSSSC-CCCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHTT------CSSC-CEEESSCTHHHHHHHHHHH
T ss_pred ceeecCCC-cCCCHHHHHHHhccccc--cccHHHHHHHHHHHHHHHHHhC------CCCC-EEEEeCCchHHHHHHHHHh
Confidence 44544433 34567777766554432 111 112234567777777664 3456 8999999999999999999
Q ss_pred cCCCCeEEEcCCCchhH--HHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc--cCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 191 INPGDEVILFAPFYDSY--EATLSMAGAKIKCITLRPPDFAIPIEELKSTIS--KNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 191 ~~~gd~Vlv~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~--~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
+++||+|++++|+|+++ ...++..|++++.+++++ ++.+|++.++++++ +++++|++++|+||||.+++ +++
T Consensus 80 ~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~ 155 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPY-NEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINP---IDA 155 (392)
T ss_dssp CCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCT-TSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECC---HHH
T ss_pred cCCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCC-CCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceecc---HHH
Confidence 99999999999999876 344566899999999875 56799999999994 57899999999999999997 567
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhc-cccceeeeEEeChhhHHHHHHHh-----
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIAPPHLTWGVRQAH----- 340 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~~~~~~~~l~~~~----- 340 (434)
|.++|++||+++|+||+|.... ....+.. .+..+++.|++|.++ .+| +||+++++++++.++...
T Consensus 156 i~~l~~~~~~~li~D~a~~~g~---~~~~~~~----~~~d~~~~s~sK~~~~~~g--~G~l~~~~~~~~~l~~~~~g~~~ 226 (392)
T 2z9v_A 156 IGALVSAHGAYLIVDAVSSFGG---MKTHPED----CKADIYVTGPNKCLGAPPG--LTMMGVSERAWAKMKANPLAPRA 226 (392)
T ss_dssp HHHHHHHTTCEEEEECTTTBTT---BSCCGGG----GTCSEEEECSSSTTCCCSC--CEEEEECHHHHHHHHTCTTSCCS
T ss_pred HHHHHHHcCCeEEEEcccccCC---ccccccc----ccceEEEecCcccccCCCc--eeEEEECHHHHHHhhhccCCCCc
Confidence 9999999999999999997421 1111211 134588999999654 445 699999999888776421
Q ss_pred ---------------hccccCCchHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHHHHHhhhCCCEeec-CC---eeEEE
Q 013883 341 ---------------SFLTFATSTPMQWAATAALRAPETY-YEELKRDYSAKKAILVEGLNAVGFKVFP-SS---GTYFV 400 (434)
Q Consensus 341 ---------------~~~~~~~~~~~q~a~~~~L~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~---~~~~~ 400 (434)
.....+.+...+.++..+|+...++ +++++++++++++.+.+.|+++|+.+.. +. .+.++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~ 306 (392)
T 2z9v_A 227 SMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAASDSIASPTTT 306 (392)
T ss_dssp STTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCTTEE
T ss_pred eeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCeeccCCccccCCceE
Confidence 1112344555566666677654444 6788899999999999999888888766 32 34566
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 401 VVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
++.++. +. +..+++++|.+++||.+.||..
T Consensus 307 ~~~~~~-~~-~~~~l~~~L~~~~gi~v~~g~~ 336 (392)
T 2z9v_A 307 AVRTPD-GV-DEKALRQAARARYGVVFSSGRG 336 (392)
T ss_dssp EEECCT-TC-CHHHHHHHHHHHHCEECEECCG
T ss_pred EEECCC-CC-CHHHHHHHHHhcCCEEEecCCC
Confidence 666531 22 5778999887767999999864
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=248.94 Aligned_cols=292 Identities=15% Similarity=0.097 Sum_probs=211.9
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+++|++.+.++.+.++.+.+++. .|. +...+++.+++.+.+.+|.+ +++ ++++++|+++++..++.+
T Consensus 29 ~v~~~~~~~~~~~~~~~v~~a~~--------~~~---~~~~~~~~~~~~~a~~~g~~-~~~-~~~~~~ggt~a~~~~~~~ 95 (374)
T 2aeu_A 29 ALYDLSGLSGGFLIDEKDKALLN--------TYI---GSSYFAEKVNEYGLKHLGGD-END-KCVGFNRTSSAILATILA 95 (374)
T ss_dssp GCEECSSCCCCCCCCHHHHHHHT--------STT---HHHHHHHHHHHHHHHHHTCC-TTE-EEEEESSHHHHHHHHHHH
T ss_pred ceeeecccCCCCCCCHHHHHHHH--------Hhc---CchHHHHHHHHHHHHHhCCC-Ccc-eEEEEcChHHHHHHHHHh
Confidence 57899998888888888888764 121 11455677777776666653 345 799999999999999998
Q ss_pred ccCCCCeEEEcCCCchhHHH---HHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcE-EEecCCCCCcccCCCHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEA---TLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRA-ILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~-i~~~~p~NPTG~~~~~e~l~ 265 (434)
+ +||+|+++.|+|+++.. .+...|++++.+ .|++.++++ ++++++ |++++||||||. +.++++
T Consensus 96 ~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v--------~d~~~l~~~-~~~~~~~v~~~~p~nptG~--~~~~l~ 162 (374)
T 2aeu_A 96 L--KPKKVIHYLPELPGHPSIERSCKIVNAKYFES--------DKVGEILNK-IDKDTLVIITGSTMDLKVI--ELENFK 162 (374)
T ss_dssp H--CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE--------SCHHHHHTT-CCTTEEEEEECBCTTSCBC--CHHHHH
T ss_pred C--CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe--------CCHHHHHhc-CCCccEEEEEccCCCCCCC--CcccHH
Confidence 8 99999999998776433 677889999887 278999998 778999 999999999997 778999
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccc
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT 344 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~ 344 (434)
+|.++|++||+++|+||+|..+..+.. ...... .+.++++.|+||.+ +|+|+||+++++++++.++..+....
T Consensus 163 ~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~----~~~di~~~S~sK~l--~g~~~G~~~~~~~~~~~l~~~~~~~~ 236 (374)
T 2aeu_A 163 KVINTAKNKEAIVFVDDASGARVRLLFNQPPALK----LGADLVVTSTDKLM--EGPRGGLLAGKKELVDKIYIEGTKFG 236 (374)
T ss_dssp HHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHH----HTCSEEEEETTSSS--SSCSCEEEEEEHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCEEEEECCcccccccccccCCccc----cCCcEEEecCcccc--cCcceEEEEECHHHHHHHHHhhcccc
Confidence 999999999999999999987642101 100111 12358899999985 47899999999999999888776555
Q ss_pred cCCchHHHHHHHHHHhCChH-HHHHHHHHHHHH----HHHHHHHhhhC----CCEee-cCCeeEEEeeecCCC-CCCCHH
Q 013883 345 FATSTPMQWAATAALRAPET-YYEELKRDYSAK----KAILVEGLNAV----GFKVF-PSSGTYFVVVDHTPF-GHETDI 413 (434)
Q Consensus 345 ~~~~~~~q~a~~~~L~~~~~-~~~~~~~~~~~~----~~~l~~~L~~~----g~~~~-~~~~~~~~~~~~~~~-~~~~~~ 413 (434)
.+.+.+.+.++..+|+.... .+++..+..+.. ++.+.+.|... |+.+. .+.|.+++|.+.... ...++.
T Consensus 237 ~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 316 (374)
T 2aeu_A 237 LEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLI 316 (374)
T ss_dssp CBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeecccccccccchH
Confidence 56788889898888886422 222222222222 46666666553 66664 566666667654210 000122
Q ss_pred HHHHHHHHhcCeEEECCCCC
Q 013883 414 AFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 414 ~~~~~Ll~~~GV~v~pG~~F 433 (434)
+++.++++++||.+.||..|
T Consensus 317 ~~~~~ll~~~gV~v~~g~~~ 336 (374)
T 2aeu_A 317 EIGFNLLKNYGIITITVAGM 336 (374)
T ss_dssp HHHHHHHHHHCEECSTTSSS
T ss_pred HHHHHHHHhCCEEEecCCCC
Confidence 37777888889999999765
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=249.55 Aligned_cols=296 Identities=14% Similarity=0.112 Sum_probs=213.2
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
.++.|||+.+.+ ..+++.+.+++.+++.. |...+|..++++++.+++.+.+| . +. +|++++|+++++..++
T Consensus 6 ~~~~id~~~~~~-~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~l~~~la~~~g-~--~~-~v~~~~~gt~a~~~al 76 (356)
T 1v72_A 6 RPPALGFSSDNI-AGASPEVAQALVKHSSG----QAGPYGTDELTAQVKRKFCEIFE-R--DV-EVFLVPTGTAANALCL 76 (356)
T ss_dssp CCCCCBCSCGGG-CCCCHHHHHHHHHTTSS----CCCSTTCSHHHHHHHHHHHHHHT-S--CC-EEEEESCHHHHHHHHH
T ss_pred CCceEeeccCCc-cCCCHHHHHHHHhhccC----cccccccchHHHHHHHHHHHHhC-C--CC-cEEEeCCccHHHHHHH
Confidence 347889998755 45678888888776532 22233334555556666655555 2 33 6999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHH--HHHc--CCEEEEEEcCCCCCCCCHHHHHh-hccc-------CCcEEEecCCCCCc
Q 013883 188 LGLINPGDEVILFAPFYDSYEAT--LSMA--GAKIKCITLRPPDFAIPIEELKS-TISK-------NTRAILMNTPHNPT 255 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~--~~~~--G~~~~~v~~~~~~~~~d~~~l~~-~i~~-------~~~~i~~~~p~NPT 255 (434)
.+++++||+|+++.|+|..+... +... |++++.+|.+ ++.+|++.+++ ++++ ++++|++++||| |
T Consensus 77 ~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-t 153 (356)
T 1v72_A 77 SAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP--AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-V 153 (356)
T ss_dssp HTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG--GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-T
T ss_pred HHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC--CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-C
Confidence 99999999999999999887665 7777 9999988875 57899999999 8875 578999999987 9
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCcccc--CCCCccccCCCCCCCceEEEccCChhhccccceee--eEEeChh
Q 013883 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAF--EMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIG--WAIAPPH 331 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~--~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G--~~~~~~~ 331 (434)
|.+++.+++++|+++|++||+++|+|++|..+.. .+.......+.. ... +++.|+||. | .|+| |++++++
T Consensus 154 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~-~~d-~~~~s~sK~-g---~~~G~g~~~~~~~ 227 (356)
T 1v72_A 154 GSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKA-GVD-ALSFGATKN-G---VLAAEAIVLFNTS 227 (356)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGG-TCC-EEEECCGGG-T---CSSCEEEEESSGG
T ss_pred CccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhh-cCC-EEEEecccC-C---CcCccEEEEECHH
Confidence 9999999999999999999999999999986532 121111111111 122 445689998 4 2555 8888999
Q ss_pred hHHHHHHHhhccc-cCC-chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCC
Q 013883 332 LTWGVRQAHSFLT-FAT-STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFG 408 (434)
Q Consensus 332 ~~~~l~~~~~~~~-~~~-~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~ 408 (434)
++++++..+.... ... ....+.++...+++ . ...+..++++++++.+.+.|+++ |+++..+.+++++|+++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~--- 302 (356)
T 1v72_A 228 LATEMSYRRKRAGHLSSKMRFLSAQIDAYLTD-D-LWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD--- 302 (356)
T ss_dssp GHHHHHHHHHHTTCCCSSTHHHHHHHHHHTST-T-HHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC---
T ss_pred HHhhHHHHhhccCchhhhHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC---
Confidence 9888776543222 122 22333333444543 2 33455777888999999999885 888877777778888762
Q ss_pred CCCHHHHHHHHHHhcCeEEECCC
Q 013883 409 HETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 409 ~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
.+++++|.+ +||.+.||.
T Consensus 303 ----~~~~~~l~~-~gi~v~~g~ 320 (356)
T 1v72_A 303 ----SAMIDALLK-AGFGFYHDR 320 (356)
T ss_dssp ----HHHHHHHHH-TTCBCBCSS
T ss_pred ----HHHHHHHHh-cCeEEeccc
Confidence 378888865 599999986
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=250.45 Aligned_cols=294 Identities=12% Similarity=0.070 Sum_probs=218.6
Q ss_pred CCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCC------
Q 013883 120 NFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINP------ 193 (434)
Q Consensus 120 ~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~------ 193 (434)
..++++.+.+++.+++......|....+..++++++.+++.+.+|. +++ +|++++|+++++..++.++..+
T Consensus 39 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~-~i~~~~ggt~a~~~~~~~~~~~~~~~~~ 115 (397)
T 3f9t_A 39 CSNVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNN--KDA-YGHIVSGGTEANLMALRCIKNIWREKRR 115 (397)
T ss_dssp CCCCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTC--TTC-EEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCC--CCC-CEEEecCcHHHHHHHHHHHHHHHHhhhh
Confidence 3445677888888887653333322225567777888888877775 456 8999999999999999998776
Q ss_pred -------CCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHH
Q 013883 194 -------GDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 194 -------gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
||+|+++.|+|+.+...+...|++++.+|.++ ++.+|++.+++++++ ++++|++++|+||||.+.+ ++
T Consensus 116 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~ 191 (397)
T 3f9t_A 116 KGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKE-DYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDN---IE 191 (397)
T ss_dssp TTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCT-TSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCC---HH
T ss_pred hcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCC-CCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCC---HH
Confidence 99999999999999999999999999999975 688999999999998 8999999999999999985 67
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCCCc--c------ccCCCCCCCceEEEccCChhhccccceeeeEEeChh-hHHHH
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMDHI--S------IASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH-LTWGV 336 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~~~--~------~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~-~~~~l 336 (434)
+|.++|++||+++|+||+|..+.++.... . ...+. . +..+++.|++|.++ +|.|+|+++++++ +.+.+
T Consensus 192 ~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~s~~K~~~-~~~~~g~~~~~~~~~~~~~ 268 (397)
T 3f9t_A 192 ELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFS-L-GVDSITIDPHKMGH-CPIPSGGILFKDIGYKRYL 268 (397)
T ss_dssp HHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGG-G-TCSEEECCTTTTTC-CCSSCEEEEESSGGGGGGT
T ss_pred HHHHHHHHhCCeEEEEccccchhhhhccccccccccccccccc-c-cCCeEEEccccccC-CCCCceEEEEeCHHHHHhh
Confidence 79999999999999999998765432110 0 01111 1 44688999999876 7889999998654 43332
Q ss_pred HHHhhccc-----------cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecC
Q 013883 337 RQAHSFLT-----------FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHT 405 (434)
Q Consensus 337 ~~~~~~~~-----------~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 405 (434)
+....+.. .+.+...+.++...+. ..++++..++++++++.+.+.|++.|+.+..+..+.++++.+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 346 (397)
T 3f9t_A 269 DVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG--REGQRKIVNECMENTLYLYKKLKENNFKPVIEPILNIVAIEDE 346 (397)
T ss_dssp CEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEEEEECT
T ss_pred ccCCccccCCCccccccccccchHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCCccEEEEEeC
Confidence 21111111 1124455666666564 4467778888899999999999998888554443445555543
Q ss_pred CCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 406 PFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 406 ~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+..++.++|.++ ||.+.||.
T Consensus 347 -----~~~~~~~~l~~~-gi~v~~~~ 366 (397)
T 3f9t_A 347 -----DYKEVCKKLRDR-GIYVSVCN 366 (397)
T ss_dssp -----THHHHHHHHHHT-TCBCEECS
T ss_pred -----CHHHHHHHHHhC-CeEEeccC
Confidence 267888888765 99999986
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=250.74 Aligned_cols=284 Identities=15% Similarity=0.099 Sum_probs=210.8
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCC-CCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEE
Q 013883 121 FDGPDFVKDAAIQAIRDGKNQYA-RGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVIL 199 (434)
Q Consensus 121 ~~~~~~v~~~~~~~~~~~~~~Y~-~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv 199 (434)
.++++.+.+++.+.+.. +.|. ...+..++|++++++++ ++++ ++++++|+++++..++.+++++||+|++
T Consensus 10 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g------~~~~-~i~~~~g~t~a~~~~~~~~~~~gd~vl~ 80 (352)
T 1iug_A 10 VRLHPKALEALARPQLH--HRTEAAREVFLKARGLLREAFR------TEGE-VLILTGSGTLAMEALVKNLFAPGERVLV 80 (352)
T ss_dssp CCCCHHHHHHHHSCCCC--TTSHHHHHHHHHHHHHHHHHHT------CSSE-EEEEESCHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCCCHHHHHHhccCCCC--ccCHHHHHHHHHHHHHHHHHhC------CCCc-eEEEcCchHHHHHHHHHhccCCCCeEEE
Confidence 34567777777665432 1111 12245678888888775 4455 8999999999999999999999999999
Q ss_pred cCCCchhHH--HHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHc--C
Q 013883 200 FAPFYDSYE--ATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIEN--D 275 (434)
Q Consensus 200 ~~p~y~~~~--~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~--~ 275 (434)
++|.|+++. ..+...|++++.++.++ ++.+|++.+++ +++++|++++|+||||.+++ +++|.++|++| |
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~ 153 (352)
T 1iug_A 81 PVYGKFSERFYEIALEAGLVVERLDYPY-GDTPRPEDVAK---EGYAGLLLVHSETSTGALAD---LPALARAFKEKNPE 153 (352)
T ss_dssp EECSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCTTTSCC---SSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTT
T ss_pred EeCCchhHHHHHHHHHcCCceEEEeCCC-CCCCCHHHHhc---cCCcEEEEEEecCCcceecC---HHHHHHHHHhhCCC
Confidence 999999975 44566899999999875 56788888877 67899999999999999997 56799999999 9
Q ss_pred cEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHH---------HHH----H-hh
Q 013883 276 VLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG---------VRQ----A-HS 341 (434)
Q Consensus 276 ~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~---------l~~----~-~~ 341 (434)
+++|+||+|.... ....+.. .+..+++.|++|.++ .+.++||+++++++++. ++. . ..
T Consensus 154 ~~li~D~a~~~~~---~~~~~~~----~~~d~~~~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (352)
T 1iug_A 154 GLVGADMVTSLLV---GEVALEA----MGVDAAASGSQKGLM-CPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEG 225 (352)
T ss_dssp CEEEEECTTTBTT---BCCCSGG----GTCSEEEEESSSTTC-CCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTT
T ss_pred CEEEEECCccccC---cceeccc----cCeeEEEecCccccc-CCCceeEEEECHHHHHHhhCCCceeeHHHHHhhcccC
Confidence 9999999997321 1111111 234688999999554 22348999999887654 221 1 12
Q ss_pred ccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCC-eeEEEeeecCCCCCCCHHHHHHHHH
Q 013883 342 FLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSS-GTYFVVVDHTPFGHETDIAFCEYLI 420 (434)
Q Consensus 342 ~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Ll 420 (434)
....+.+...+.++..+|+..++++++++++++++++.+.+.|+++|+++..+. .+.++|+.+.. +. +..+++++|.
T Consensus 226 ~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~ 303 (352)
T 1iug_A 226 ESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPE-GV-PYARVKEAFA 303 (352)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCT-TC-CHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeEEEEEcCC-CC-CHHHHHHHHH
Confidence 234556777777777777653334788899999999999999998899887764 55567777642 22 5778988887
Q ss_pred HhcCeEEECCC
Q 013883 421 KEVGVVAIPTS 431 (434)
Q Consensus 421 ~~~GV~v~pG~ 431 (434)
++ ||.+.||.
T Consensus 304 ~~-gi~v~~~~ 313 (352)
T 1iug_A 304 QR-GAVIAGGQ 313 (352)
T ss_dssp TT-TEECEECC
T ss_pred HC-CEEEEeCC
Confidence 65 99999986
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=253.21 Aligned_cols=295 Identities=20% Similarity=0.205 Sum_probs=207.7
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
+..|+|+.+...+ +++.+++++.++.. ....|.+..+..+||++++++++ .+ ++++++|+++++.+++.
T Consensus 3 ~~~i~~~~~~~~~-p~~~~~~a~~~~~~-~~~~y~~~~~~~~l~~~la~~~g--------~~-~~~~~~~gt~a~~~~~~ 71 (347)
T 1jg8_A 3 HMMIDLRSDTVTK-PTEEMRKAMAQAEV-GDDVYGEDPTINELERLAAETFG--------KE-AALFVPSGTMGNQVSIM 71 (347)
T ss_dssp --CEECSCGGGCC-CCHHHHHHHHTCCC-CCGGGTCCHHHHHHHHHHHHHHT--------CS-EEEEESCHHHHHHHHHH
T ss_pred ceEEEeccccCCC-CCHHHHHHHhcCCC-CCcccCCChHHHHHHHHHHHHhC--------Cc-eEEEecCcHHHHHHHHH
Confidence 3678999986655 55677777654432 22357777788899999999986 23 57777788899999999
Q ss_pred HccCCCCeEEEcCCCchhHH---HHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc------CCcEEEecCCCCCc-ccC
Q 013883 189 GLINPGDEVILFAPFYDSYE---ATLSMAGAKIKCITLRPPDFAIPIEELKSTISK------NTRAILMNTPHNPT-GKM 258 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~i~~~~p~NPT-G~~ 258 (434)
+++++||+|++++|+|.... ..+...|++++.+ .+ +++.+|++.+++++++ ++++|++++||||| |.+
T Consensus 72 ~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~-~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~ 149 (347)
T 1jg8_A 72 AHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG-KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRV 149 (347)
T ss_dssp HHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE-ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBC
T ss_pred HhcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC-CCCccCHHHHHHHhccccccccCceEEEEeccccccCCcc
Confidence 99999999999999997643 3577789999888 43 3566899999999975 68999999999999 999
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcCcCCccc--cCCCCccccCCCCCCCceEEEccCChhhccccceee-eEEeChhhHHH
Q 013883 259 FTREELNVIASLCIENDVLVFSDEVYDKLA--FEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIG-WAIAPPHLTWG 335 (434)
Q Consensus 259 ~~~e~l~~i~~la~~~~~~iI~Deay~~~~--~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G-~~~~~~~~~~~ 335 (434)
++.+++++|+++|++||+++|+|++|.... +.+. ....+....+ .++.|+||.++.+ +| |++++++++++
T Consensus 150 ~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~d--~~~~s~sK~l~~~---~G~~~~~~~~~~~~ 222 (347)
T 1jg8_A 150 VPLENIKEICTIAKEHGINVHIDGARIFNASIASGV--PVKEYAGYAD--SVMFCLSKGLCAP---VGSVVVGDRDFIER 222 (347)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC--CHHHHHHTCS--EEEEESSSTTCCS---SCEEEEECHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC--ChHHhccccc--EEEEecccccCCC---ceEEEEcCHHHHHH
Confidence 999999999999999999999999875321 1111 1111111123 2345899999743 67 56778888888
Q ss_pred HHHHhhccccC--CchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEee--cCCeeEEEeeecCCCCCCC
Q 013883 336 VRQAHSFLTFA--TSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVF--PSSGTYFVVVDHTPFGHET 411 (434)
Q Consensus 336 l~~~~~~~~~~--~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~~~~ 411 (434)
++..+.....+ .+...+.++..+|+...+.++ + ..++++.+.+.|+++|+.+. ++.++ |+|+.+...+. +
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~-~~~~~~~l~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~-~ 296 (347)
T 1jg8_A 223 ARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLK---E-DHENARFLALKLKEIGYSVNPEDVKTN-MVILRTDNLKV-N 296 (347)
T ss_dssp HHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHH---H-HHHHHHHHHHHHHHHTCBCCGGGCCSS-EEEEECTTSSS-C
T ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHhcCceeccCCCcce-EEEEEcccccC-C
Confidence 77655433322 244555555666654322222 2 23466777888877677652 34455 57887742222 5
Q ss_pred HHHHHHHHHHhcCeEEECC
Q 013883 412 DIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 412 ~~~~~~~Ll~~~GV~v~pG 430 (434)
..+++++|.+ +||.+.|+
T Consensus 297 ~~~~~~~l~~-~gi~v~~~ 314 (347)
T 1jg8_A 297 AHGFIEALRN-SGVLANAV 314 (347)
T ss_dssp HHHHHHHHHH-HTEECEEE
T ss_pred HHHHHHHHHH-CCCEEecC
Confidence 7789999865 59999875
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=257.65 Aligned_cols=300 Identities=14% Similarity=0.120 Sum_probs=216.9
Q ss_pred CeeEeCCCC---CCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 110 GAINLGQGF---PNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 110 ~~i~l~~g~---p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
..+||..+. +--..++.+.+++.+++.+..+.+ .... .+.++++++.+.+.+| .+ +|++++|+++++..+
T Consensus 40 ~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~-~~~~-~~~~~~l~~~la~~~~----~~-~v~~~~gg~~a~~~a 112 (406)
T 4adb_A 40 EYIDFAGGIAVNALGHAHPELREALNEQASKFWHTG-NGYT-NEPVLRLAKKLIDATF----AD-RVFFCNSGAEANEAA 112 (406)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCC-TTSC-CHHHHHHHHHHHHHSS----CS-EEEEESSHHHHHHHH
T ss_pred EEEECCCchhhcccCCCCHHHHHHHHHHHHhccccc-CCcC-CHHHHHHHHHHHhhCC----CC-eEEEeCcHHHHHHHH
Confidence 578888762 211257889999988887632211 1111 2345555555555554 34 799999999999999
Q ss_pred HHHccC-------CC-CeEEEcCCCchhHHHHHHHcCC-------------EEEEEEcCCCCCCCCHHHHHhhcccCCcE
Q 013883 187 ILGLIN-------PG-DEVILFAPFYDSYEATLSMAGA-------------KIKCITLRPPDFAIPIEELKSTISKNTRA 245 (434)
Q Consensus 187 ~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~d~~~l~~~i~~~~~~ 245 (434)
+..++. +| |+|++.+|+|+++.......+. ++..+|.. |++.+++++++++++
T Consensus 113 l~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~l~~~l~~~~~~ 186 (406)
T 4adb_A 113 LKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYN------DINSASALIDDSTCA 186 (406)
T ss_dssp HHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTT------CHHHHHTTCSTTEEE
T ss_pred HHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCC------cHHHHHHHhcCCeEE
Confidence 998865 66 9999999999998655554443 34444433 799999999988999
Q ss_pred EEecCCCCCcccCC--CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccccee
Q 013883 246 ILMNTPHNPTGKMF--TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKI 323 (434)
Q Consensus 246 i~~~~p~NPTG~~~--~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~ 323 (434)
|+++ |+||||.++ +.+++++|+++|++||+++|+||+|.+|.+.+....+.... ...+++ ||||.++ +|+|+
T Consensus 187 v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~-~~~d~~---t~sK~~~-~G~r~ 260 (406)
T 4adb_A 187 VIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYG-VTPDLL---TTAKALG-GGFPV 260 (406)
T ss_dssp EEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHT-CCCSEE---EECGGGG-TTSCC
T ss_pred EEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcC-CCCCEE---Eechhhc-CCCCe
Confidence 9888 999999988 99999999999999999999999999887665543322222 122333 7899999 99999
Q ss_pred eeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC----CEeecCCeeEE
Q 013883 324 GWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG----FKVFPSSGTYF 399 (434)
Q Consensus 324 G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~ 399 (434)
||+++++++++.+.......+++.+.+.+.++..+|+..++ ++.+++++++++.+.+.|++++ ........+.+
T Consensus 261 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~ 338 (406)
T 4adb_A 261 GALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINT--PEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLL 338 (406)
T ss_dssp EEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTE
T ss_pred EEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE
Confidence 99999999988777666666788999999999988875221 4667777888888888887642 11112223556
Q ss_pred EeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 400 VVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+++.+......+..+++++|+++ ||.+.|+.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~ 369 (406)
T 4adb_A 339 IGCVLNADYAGQAKQISQEAAKA-GVMVLIAG 369 (406)
T ss_dssp EEEEECTTTTTCHHHHHHHHHHT-TEECEESS
T ss_pred EEEEEeCCcHHHHHHHHHHHHHC-CcEEeecC
Confidence 67766432112477899988776 99999874
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-30 Score=253.71 Aligned_cols=296 Identities=16% Similarity=0.097 Sum_probs=220.1
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCC----CCCC----CCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGK----NQYA----RGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~----~~Y~----~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
+.+.|..+.+. +.++.+.+++.+.+.+.. ..|. ...+..+++++++++++ .+++ +|++++|+++
T Consensus 26 ~~~~ld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~-~v~~~~g~t~ 97 (406)
T 3cai_A 26 GWVHFDAPAGM-LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVN------ADPG-GVVLGADRAV 97 (406)
T ss_dssp SCEECBGGGCC-CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHT------CCGG-GEEEESCHHH
T ss_pred CeEEEeCCCcC-CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhC------CCCC-eEEEeCChHH
Confidence 46778777665 667888999988876521 1232 12345677888888775 4556 8999999999
Q ss_pred HHHHHHHHc---cCCCCeEEEcCCCchhHHHHHHH----cCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCC
Q 013883 182 AIAATILGL---INPGDEVILFAPFYDSYEATLSM----AGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNP 254 (434)
Q Consensus 182 ai~~~~~~l---~~~gd~Vlv~~p~y~~~~~~~~~----~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NP 254 (434)
++.+++.++ +++||+|+++.|+|+.+...+.. .|++++.++++++++.+|++.+++++++++++|++++|+||
T Consensus 98 al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~np 177 (406)
T 3cai_A 98 LLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGT 177 (406)
T ss_dssp HHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTT
T ss_pred HHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCC
Confidence 999999888 78999999999999986555443 79999999988557789999999999989999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceee-eEEeChhhH
Q 013883 255 TGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIG-WAIAPPHLT 333 (434)
Q Consensus 255 TG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G-~~~~~~~~~ 333 (434)
||.+++ +++|.++|+++|+++|+|++|.... ....+.. .+.++++.|++|.+| ++ +| |++++++++
T Consensus 178 tG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~---~~~~~~~----~~~d~~~~s~~K~~g-~~--~G~~~~~~~~~~ 244 (406)
T 3cai_A 178 LGGVTD---LRAMTKLVHDVGALVVVDHSAAAPY---RLLDIRE----TDADVVTVNAHAWGG-PP--IGAMVFRDPSVM 244 (406)
T ss_dssp TCBBCC---CHHHHHHHHHTTCEEEEECTTTTTT---CCCCHHH----HCCSEEEEEGGGGTS-CS--CEEEEESCHHHH
T ss_pred ccccCC---HHHHHHHHHHcCCEEEEEcccccCC---CCCCchh----cCCCEEEeehhhhcC-CC--cCeEEEEehHHH
Confidence 999997 6679999999999999999997421 1111111 235688999999887 54 99 999999887
Q ss_pred HHHHHHhh---------ccccCCchHHHHHHHHHHhCChH---------------HHHHHHHHHHHHHHHHHHHhhhC-C
Q 013883 334 WGVRQAHS---------FLTFATSTPMQWAATAALRAPET---------------YYEELKRDYSAKKAILVEGLNAV-G 388 (434)
Q Consensus 334 ~~l~~~~~---------~~~~~~~~~~q~a~~~~L~~~~~---------------~~~~~~~~~~~~~~~l~~~L~~~-g 388 (434)
+.++.... ....+.+...+.++..+|+...+ ++++++++++++++.+.+.|+++ |
T Consensus 245 ~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 324 (406)
T 3cai_A 245 NSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPL 324 (406)
T ss_dssp HTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred hhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 66543321 11234455555455555543211 57888899999999999999987 7
Q ss_pred CEeecCC---eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 389 FKVFPSS---GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 389 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+.+..+. ++ ++++.+.. .+..++.++|.+ +||.+.+|.
T Consensus 325 ~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~L~~-~gi~v~~g~ 365 (406)
T 3cai_A 325 VMLIGRPEAQIP-VVSFAVHK---VPADRVVQRLAD-NGILAIANT 365 (406)
T ss_dssp EEECCCCSSBCS-EEEEEETT---BCHHHHHHHHHH-TTEECEECC
T ss_pred eEEcCCccccCC-EEEEEECC---cCHHHHHHHHHH-CCcEEecCC
Confidence 8776653 55 45665532 247788888865 699999986
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-30 Score=251.34 Aligned_cols=287 Identities=14% Similarity=0.096 Sum_probs=211.3
Q ss_pred CCcHHHHHHHHHHHHcCC----CCCCCC----CCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc--
Q 013883 122 DGPDFVKDAAIQAIRDGK----NQYARG----HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI-- 191 (434)
Q Consensus 122 ~~~~~v~~~~~~~~~~~~----~~Y~~~----~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~-- 191 (434)
++++.+.+++.+.+.+.. ..|... .+..+++++++++++ .+++ +|++|+|+++++.+++.++.
T Consensus 11 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~-~v~~~~g~t~a~~~~~~~l~~~ 83 (382)
T 4eb5_A 11 PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVN------GGGG-TVVFTSGATEANNLAIIGYAMR 83 (382)
T ss_dssp CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHT------CTTE-EEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhC------CCCC-eEEEcCchHHHHHHHHHHHHhh
Confidence 567889999988887521 113321 234566677766664 4456 89999999999999999998
Q ss_pred --CCCCeEEEcCCCchhHHHHHHH---cCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 192 --NPGDEVILFAPFYDSYEATLSM---AGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 192 --~~gd~Vlv~~p~y~~~~~~~~~---~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
++||+|++++|+|+.+...+.. .|++++.+++++ ++.+|++.+++++++++++|++++|+||||.+++ +++
T Consensus 84 ~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~ 159 (382)
T 4eb5_A 84 NARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK-YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQP---VEE 159 (382)
T ss_dssp HGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT-TSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCC---HHH
T ss_pred ccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC-CCccCHHHHHHHhcCCCeEEEEeccCCCccccCC---HHH
Confidence 8999999999999988776654 699999999875 6779999999999988999999999999999997 567
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhh-HHHHH----HHhh
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL-TWGVR----QAHS 341 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~-~~~l~----~~~~ 341 (434)
|+++|++||++ |+||+|... .....+.. .+.++++.|+||.+|.+| +||++++++. +.... ....
T Consensus 160 i~~l~~~~~~~-i~D~a~~~g---~~~~~~~~----~~~di~~~s~sK~~g~~g--~G~~~~~~~~~l~~~~~~~~~~~~ 229 (382)
T 4eb5_A 160 ISEVLAGKAAL-HIDATASVG---QIEVDVEK----IGADMLTISSNDIYGPKG--VGALWIRKEAKLQPVILGGGQENG 229 (382)
T ss_dssp HHHHHTTSSEE-EEECTTTBT---TBCCCHHH----HTCSEEEEETGGGTCCSS--CEEEEEETTCCCCCSSCSSCTGGG
T ss_pred HHHHHHHCCCE-EEEcchhcC---CcccCccc----cCCCEEEeehHHhcCCCc--eEEEEEccccccCceecCCCcccc
Confidence 99999999999 999999831 11111111 134688999999988666 7999988763 11110 0011
Q ss_pred ccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCe---eEEEeeecCCCCCCCHHHHHH
Q 013883 342 FLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSG---TYFVVVDHTPFGHETDIAFCE 417 (434)
Q Consensus 342 ~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 417 (434)
....+.+...+.++..+|+...+++++++++++++++.+.+.|+++ |+.+..+.+ +.++++.+. +. +..++++
T Consensus 230 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~ 306 (382)
T 4eb5_A 230 LRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFS--YI-EGESIVL 306 (382)
T ss_dssp TSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEET--TS-CHHHHHH
T ss_pred ccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeC--Cc-CHHHHHH
Confidence 2234455566666666776544467888999999999999999987 788776542 224455553 22 5778888
Q ss_pred HHHHhcCeEEECCCCC
Q 013883 418 YLIKEVGVVAIPTSVF 433 (434)
Q Consensus 418 ~Ll~~~GV~v~pG~~F 433 (434)
+|.+ +||.+.||..|
T Consensus 307 ~l~~-~gi~v~~g~~~ 321 (382)
T 4eb5_A 307 SLDM-AGIQASTGSAC 321 (382)
T ss_dssp HHHH-HTCBCBCCCGG
T ss_pred HHHH-CCEEEeccccc
Confidence 8864 69999999754
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-31 Score=263.06 Aligned_cols=306 Identities=13% Similarity=0.128 Sum_probs=216.5
Q ss_pred CeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCC---CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 110 GAINLGQGFP--NFD-GPDFVKDAAIQAIRDGK---NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 110 ~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~---~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
..+||..+.+ .+. +++.+.+++.+++.+.. ..|.+..+..+|++++++++. | . .++ +|++++|+++++
T Consensus 42 ~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~---~-~-~~~-~v~~~~g~~~a~ 115 (426)
T 1sff_A 42 EYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVP---G-D-FAK-KTLLVTTGSEAV 115 (426)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSS---C-S-SCE-EEEEESSHHHHH
T ss_pred EEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCC---c-c-ccc-EEEEeCchHHHH
Confidence 5688877642 232 57888999988876532 145666678899999999874 2 1 235 899999999999
Q ss_pred HHHHH---HccCCCCeEEEcCCCchhHH-HHHHHcCCE-------------EEEEEcCC----CCCCCCHHHHHhhcc--
Q 013883 184 AATIL---GLINPGDEVILFAPFYDSYE-ATLSMAGAK-------------IKCITLRP----PDFAIPIEELKSTIS-- 240 (434)
Q Consensus 184 ~~~~~---~l~~~gd~Vlv~~p~y~~~~-~~~~~~G~~-------------~~~v~~~~----~~~~~d~~~l~~~i~-- 240 (434)
..++. .+.++| +|++.+|+|+++. ..+...|.+ ++.++++. .++.+|++.++++++
T Consensus 116 ~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~ 194 (426)
T 1sff_A 116 ENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKND 194 (426)
T ss_dssp HHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhc
Confidence 99988 677776 8999999998754 456666653 66777653 123468999999886
Q ss_pred ---cCCcEEEec-CCCCCcc-cCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChh
Q 013883 241 ---KNTRAILMN-TPHNPTG-KMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKT 315 (434)
Q Consensus 241 ---~~~~~i~~~-~p~NPTG-~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 315 (434)
+++++|+++ +++| || .+++.+++++|+++|++||++||+||+|.+|.+.+....+... +..+.+.||||.
T Consensus 195 ~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~----~~~~di~s~sK~ 269 (426)
T 1sff_A 195 AAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQM----GVAPDLTTFAKS 269 (426)
T ss_dssp CCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGT----TSCCSEEEECGG
T ss_pred cCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhc----CCCCCEEEEccc
Confidence 356677663 5678 99 7889999999999999999999999999987765543222221 112234599999
Q ss_pred hccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC----C-CE
Q 013883 316 FSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV----G-FK 390 (434)
Q Consensus 316 ~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~ 390 (434)
+|. |+|+||+++++++++.+.......+++.+.+.+.++.++|+..++ ++..++++++++.+++.|+++ . +.
T Consensus 270 ~~~-GlriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 346 (426)
T 1sff_A 270 IAG-GFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ--ENLLQKANDLGQKLKDGLLAIAEKHPEIG 346 (426)
T ss_dssp GGT-SSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred ccC-CCceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 995 999999999998877665433445677888999998887764221 134455666666666666553 2 23
Q ss_pred eecCCeeEEEeeecCCC------CCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 391 VFPSSGTYFVVVDHTPF------GHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 391 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
..++. ++|+|+++.+. ...+..+++++|+++ ||.+.||..
T Consensus 347 ~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~ 392 (426)
T 1sff_A 347 DVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARARDK-GLILLSCGP 392 (426)
T ss_dssp EEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHT-TEECEEEST
T ss_pred EEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHHHC-CcEEecCCC
Confidence 33445 55778877421 011356788888765 999999874
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-30 Score=258.66 Aligned_cols=296 Identities=18% Similarity=0.126 Sum_probs=207.5
Q ss_pred eeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc
Q 013883 111 AINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL 190 (434)
Q Consensus 111 ~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l 190 (434)
.+||..+....+.++.+.++ +..+...|.+..+..+||++++++++ .+ ++++++|+++++..++.++
T Consensus 44 ylD~~~~~~~~~~~~~~~~a----~~~~~~~y~~~~~~~~l~~~la~~~~--------~~-~~~~~~~gt~a~~~al~~l 110 (456)
T 2ez2_A 44 YIDLLTDSGTNAMSDKQWAG----MMMGDEAYAGSENFYHLERTVQELFG--------FK-HIVPTHQGRGAENLLSQLA 110 (456)
T ss_dssp SEECSCSSSCCCCCHHHHHH----HTTCCCCSSSCHHHHHHHHHHHHHHC--------CS-EEEEESSHHHHHHHHHHHH
T ss_pred eeeeccccCCccCCHHHHHH----hhcchhhcccChhHHHHHHHHHHHhC--------CC-cEEEeCCcHHHHHHHHHHh
Confidence 45555443222334444443 33445568877788999999999986 34 7999999999999999999
Q ss_pred cCCCCeEEEcCCCc-hhHHHHHHHcCCEEEEEEcCCC---------CCCCCHHHHHhhcccCC----cEEEecCCCC-Cc
Q 013883 191 INPGDEVILFAPFY-DSYEATLSMAGAKIKCITLRPP---------DFAIPIEELKSTISKNT----RAILMNTPHN-PT 255 (434)
Q Consensus 191 ~~~gd~Vlv~~p~y-~~~~~~~~~~G~~~~~v~~~~~---------~~~~d~~~l~~~i~~~~----~~i~~~~p~N-PT 255 (434)
+++|| +++.|+| ..+...+...|++++.++++++ ++.+|++.|++++++++ ++|++++|+| ||
T Consensus 111 ~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~pt 188 (456)
T 2ez2_A 111 IKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAG 188 (456)
T ss_dssp CCTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTT
T ss_pred CCCCC--EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCC
Confidence 99999 7889999 7788899999999999988732 36889999999998766 8899999998 99
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCc----------cccCCCCcc-cc-CCCCCCCceEEEccCChhhcccccee
Q 013883 256 GKMFTREELNVIASLCIENDVLVFSDEVYDK----------LAFEMDHIS-IA-SLPGMYERTVTMNSLGKTFSLTGWKI 323 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~~~~iI~Deay~~----------~~~~~~~~~-~~-~~~~~~~~~i~i~S~SK~~g~~G~R~ 323 (434)
|.+++.+++++|+++|++||+++|+||+|.. +.+.+.... +. .+.. ..+++++ |++|..+ +| |+
T Consensus 189 G~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~-~~d~~~~-S~kk~~~-~~-~g 264 (456)
T 2ez2_A 189 GQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFS-YADGCTM-SGKKDCL-VN-IG 264 (456)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHT-TCSEEEE-ETTTTTC-CS-SC
T ss_pred CccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcc-cCCEEEE-eCcccCC-CC-ce
Confidence 9999999999999999999999999999986 334433210 00 0111 1234444 7888765 67 89
Q ss_pred eeEEe-ChhhHHHHHHHhhcc-----ccCCchHHHHH-HHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCe
Q 013883 324 GWAIA-PPHLTWGVRQAHSFL-----TFATSTPMQWA-ATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSG 396 (434)
Q Consensus 324 G~~~~-~~~~~~~l~~~~~~~-----~~~~~~~~q~a-~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 396 (434)
||+++ ++++++.++..+... ..+.+.....+ +...++..+ ++..++.+++.+.+.+.|++.|+++..+.+
T Consensus 265 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~ 341 (456)
T 2ez2_A 265 GFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ---YEYIEHRVKQVRYLGDKLKAAGVPIVEPVG 341 (456)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHTTCCBCSSCC
T ss_pred eEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHhcCCCccccCCC
Confidence 99999 688888777654321 11222222222 333332211 234444555667788888877888877888
Q ss_pred eEEEeeecCC--CCCCCHHHH-----HHHHHHhcCeEEEC
Q 013883 397 TYFVVVDHTP--FGHETDIAF-----CEYLIKEVGVVAIP 429 (434)
Q Consensus 397 ~~~~~~~~~~--~~~~~~~~~-----~~~Ll~~~GV~v~p 429 (434)
++++|+++.. .+. +..++ +++|++++||.+.|
T Consensus 342 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~L~~~~gv~~~~ 380 (456)
T 2ez2_A 342 GHAVFLDARRFCEHL-TQDEFPAQSLAASIYVETGVRSME 380 (456)
T ss_dssp SSEEEEEHHHHTTTS-CGGGCHHHHHHHHHHHHHSEECEE
T ss_pred ceEEEEEhHHhcCCC-ChhhccHHHHHHHHHHhcCeeeec
Confidence 8888887631 111 23344 77776677999776
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-30 Score=251.60 Aligned_cols=287 Identities=14% Similarity=0.124 Sum_probs=211.2
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCCC--CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEE
Q 013883 121 FDGPDFVKDAAIQAIRDGKNQYAR--GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVI 198 (434)
Q Consensus 121 ~~~~~~v~~~~~~~~~~~~~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vl 198 (434)
.+.++.+.+++.+.+. ..+.+ .....++++.+++++ |.+.+++ +|++++|+++++. ++..++++||+|+
T Consensus 11 ~~~~~~v~~a~~~~~~---~~~~~~~~~~~~~~~~~la~~~----~~~~~~~-~v~~~~g~t~al~-~~~~~~~~gd~vi 81 (384)
T 3zrp_A 11 TTIKEDVLVAGLENNV---GFTSKEFVEALAYSLKGLRYVM----GASKNYQ-PLIIPGGGTSAME-SVTSLLKPNDKIL 81 (384)
T ss_dssp SCCCHHHHHHTTCCSC---CTTSHHHHHHHHHHHHHHHHHH----TCCTTSE-EEEEESCHHHHHH-HGGGGCCTTCEEE
T ss_pred CCCCHHHHHHhhcccc---ccccHHHHHHHHHHHHHHHHHh----CCCCCCc-EEEEcCCcHHHHH-HHHhhcCCCCEEE
Confidence 3456666665544332 11211 112334555555554 4433225 8999999999999 9999999999999
Q ss_pred EcCCCchh--HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcC
Q 013883 199 LFAPFYDS--YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIEND 275 (434)
Q Consensus 199 v~~p~y~~--~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~ 275 (434)
+++|+|++ +...+...|++++.+++++ ++.+|++.+++++++ ++++|++++|+||||.+++ +++|.++|++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~ 157 (384)
T 3zrp_A 82 VVSNGVFGDRWEQIFKRYPVNVKVLRPSP-GDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREP---VKDVINKIRKYV 157 (384)
T ss_dssp EECSSHHHHHHHHHHTTSSCEEEEECCST-TCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECC---HHHHHHHHGGGE
T ss_pred EecCCcchHHHHHHHHHcCCcEEEecCCC-CCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECc---HHHHHHHHHhcC
Confidence 99999976 5566778999999999886 678999999999988 8999999999999999997 667999999999
Q ss_pred cEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHH-------------HHHh--
Q 013883 276 VLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGV-------------RQAH-- 340 (434)
Q Consensus 276 ~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l-------------~~~~-- 340 (434)
+++|+|++|..... ...+. ..+.++++.|++|.++ .+.++||+++++++++.+ ....
T Consensus 158 ~~li~D~a~~~~~~---~~~~~----~~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (384)
T 3zrp_A 158 ELIVVDGVSSVGAE---EVKAE----EWNVDVYLTASQKALG-SAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPV 229 (384)
T ss_dssp EEEEEECTTTTTTS---CCCTT----TTTCSEEEEETTSTTC-CCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHH
T ss_pred CEEEEECcccccCc---ccccc----ccCCCEEEecCccccc-CCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHH
Confidence 99999999875322 11111 1245689999999885 345599999999988776 2222
Q ss_pred -------hcccc-CCchHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHhhhCCCEeecCC----eeEEEeeecCCC
Q 013883 341 -------SFLTF-ATSTPMQWAATAALRAPET-YYEELKRDYSAKKAILVEGLNAVGFKVFPSS----GTYFVVVDHTPF 407 (434)
Q Consensus 341 -------~~~~~-~~~~~~q~a~~~~L~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~~~~~~~~~~~ 407 (434)
....+ +.+...+.++..+|+...+ .+++++++++++++.+.+.|++.|+++..+. +++++++.+..
T Consensus 230 ~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~- 308 (384)
T 3zrp_A 230 MRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKV- 308 (384)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECSS-
T ss_pred HHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECCC-
Confidence 11122 4555666666666664333 3778899999999999999999898887766 46666777643
Q ss_pred CCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 408 GHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 408 ~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
.+..+++++|.++ ||.+.||..
T Consensus 309 --~~~~~~~~~l~~~-gi~v~~g~~ 330 (384)
T 3zrp_A 309 --ADPQKVLAGTVNE-GVEFAPGVH 330 (384)
T ss_dssp --SCHHHHHHHHHTT-TCCCEECCC
T ss_pred --CCHHHHHHHHHHC-CEEEecCCC
Confidence 3577899988766 999999973
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=252.18 Aligned_cols=297 Identities=15% Similarity=0.124 Sum_probs=217.6
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCC------------CCcHHHHHHHHHHHHhhcCCCCCCCCcEEEc
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARG------------HGVPEFNSAIASRFKKDSGLEVDPEKEVTVT 176 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~------------~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t 176 (434)
.+.|.|..+.+. +.++.+.+++.+++... ..|..+ .+..++++.++++++ .+++ +|+++
T Consensus 21 ~~~iyld~~~~~-~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~~~~-~v~~~ 91 (423)
T 3lvm_A 21 KLPIYLDYSATT-PVDPRVAEKMMQFMTMD-GTFGNPASRSHRFGWQAEEAVDIARNQIADLVG------ADPR-EIVFT 91 (423)
T ss_dssp CSSEECBTTTCC-CCCHHHHHHHTTSSSTT-SCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHT------CCGG-GEEEE
T ss_pred CCCEeecCCCcC-CCCHHHHHHHHHHHhhc-ccccCCCccccchhHHHHHHHHHHHHHHHHHcC------CCCC-eEEEe
Confidence 367888777665 56788888887766510 112111 122456666666554 4566 89999
Q ss_pred CChHHHHHHHHHHccC----CCCeEEEcCCCchhHHHHHHH---cCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEec
Q 013883 177 SGCTEAIAATILGLIN----PGDEVILFAPFYDSYEATLSM---AGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMN 249 (434)
Q Consensus 177 ~G~~~ai~~~~~~l~~----~gd~Vlv~~p~y~~~~~~~~~---~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~ 249 (434)
+|+++++.+++.++.+ +||+|+++.|+|+++...+.. .|++++.++.++ ++.+|++.+++++++++++|+++
T Consensus 92 ~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~ 170 (423)
T 3lvm_A 92 SGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR-NGIIDLKELEAAMRDDTILVSIM 170 (423)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT-TSCCCHHHHHHHCCTTEEEEECC
T ss_pred CChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC-CCccCHHHHHHhcCCCcEEEEEe
Confidence 9999999999998874 899999999999998877744 599999999886 78889999999999999999999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC
Q 013883 250 TPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP 329 (434)
Q Consensus 250 ~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~ 329 (434)
+|+||||.+++ +++|+++|++||++||+||+|..... ..... ..+..+++.|+||.+|.+| +||++++
T Consensus 171 ~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~---~~~~~----~~~~di~~~s~sK~~g~~g--~G~~~~~ 238 (423)
T 3lvm_A 171 HVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKL---PIDLS----QLKVDLMSFSGHKIYGPKG--IGALYVR 238 (423)
T ss_dssp SBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTS---CCCTT----TSCCSEEEEESTTTTSCSS--CEEEEEC
T ss_pred CCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCC---CcChh----hcCCCEEEechHHhcCCCC--eEEEEEe
Confidence 99999999997 66699999999999999999875321 11111 1245688999999888666 9999999
Q ss_pred hhhHHHHHHHhh-------ccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCe---eE
Q 013883 330 PHLTWGVRQAHS-------FLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSG---TY 398 (434)
Q Consensus 330 ~~~~~~l~~~~~-------~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~---~~ 398 (434)
++....+..... ....+.+...+.++..+++...+++++++++++++++.+.+.|+++ |+.+..+.+ +.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 318 (423)
T 3lvm_A 239 RKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPN 318 (423)
T ss_dssp BTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTT
T ss_pred ccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCC
Confidence 776554433221 2234556666777767776545557888999999999999999988 888876653 12
Q ss_pred EEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 399 FVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
++++.+. + .+..++.+.|.+ |.+.+|..|
T Consensus 319 ~~~~~~~--~-~~~~~l~~~l~~---i~v~~g~~~ 347 (423)
T 3lvm_A 319 ILNVSFN--Y-VEGESLIMALKD---LAVSSGSAC 347 (423)
T ss_dssp EEEEEET--T-SCHHHHHHHTTT---EECBCCCC-
T ss_pred eEEEEeC--C-CCHHHHHHHHhh---heeccCccc
Confidence 3333332 2 246777777643 999998765
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=251.49 Aligned_cols=286 Identities=15% Similarity=0.181 Sum_probs=206.2
Q ss_pred eEeCCCCCCCCCcHHHHHHHHHHHH---c--CCCCCC--CCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 112 INLGQGFPNFDGPDFVKDAAIQAIR---D--GKNQYA--RGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 112 i~l~~g~p~~~~~~~v~~~~~~~~~---~--~~~~Y~--~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
.+++.++|++..++.+.+++.+++. + ..+.|. +..+..++++.++++++ . + + .+++++ +++++.
T Consensus 23 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g----~--~-~-~i~~~s-G~~a~~ 93 (398)
T 2rfv_A 23 STGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLER----G--E-A-GLATAS-GISAIT 93 (398)
T ss_dssp TTCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHT----C--S-E-EEEESS-HHHHHH
T ss_pred CCCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhC----C--C-c-EEEECC-HHHHHH
Confidence 3578899999988877777666655 2 223343 22234556666666554 2 1 3 455555 569999
Q ss_pred HHHHHccCCCCeEEEcCCCchhHHHHH----HHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCC
Q 013883 185 ATILGLINPGDEVILFAPFYDSYEATL----SMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFT 260 (434)
Q Consensus 185 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~ 260 (434)
.++.+++++||+|+++.|.|+++...+ ...|.+++.++.+ |++.+++++++++++|++++|+||||.+++
T Consensus 94 ~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~ 167 (398)
T 2rfv_A 94 TTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA------KPEEIRAAMRPETKVVYIETPANPTLSLVD 167 (398)
T ss_dssp HHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT------SHHHHHHHCCTTEEEEEEESSBTTTTBCCC
T ss_pred HHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC------CHHHHHHhcCCCCeEEEEECCCCCCCcccC
Confidence 999999999999999999999988776 7889999998875 799999999989999999999999999996
Q ss_pred HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccccee-eeEEeChhhHH-HHHH
Q 013883 261 REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKI-GWAIAPPHLTW-GVRQ 338 (434)
Q Consensus 261 ~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~-G~~~~~~~~~~-~l~~ 338 (434)
+++|+++|++||+++|+||+|..+.+.. .+ . .+.++++.|+||.++.+|+|+ ||+++++++++ .++.
T Consensus 168 ---l~~i~~l~~~~~~~li~De~~~~~~~~~---~~-~----~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~ 236 (398)
T 2rfv_A 168 ---IETVAGIAHQQGALLVVDNTFMSPYCQQ---PL-Q----LGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV 236 (398)
T ss_dssp ---HHHHHHHHHHTTCEEEEECTTTCTTTCC---GG-G----GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT
T ss_pred ---HHHHHHHHHHcCCEEEEECCCcccccCC---ch-h----hCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHH
Confidence 7889999999999999999999765531 11 1 246789999999998899998 99999998887 5665
Q ss_pred Hhhcc-ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC---------------CCEeec----CCeeE
Q 013883 339 AHSFL-TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV---------------GFKVFP----SSGTY 398 (434)
Q Consensus 339 ~~~~~-~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------------g~~~~~----~~~~~ 398 (434)
..... ..+.+.+.+.++..+|+...+++++ +.++.+.+.+.|++. ++.+.. ..+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~ 312 (398)
T 2rfv_A 237 GLKDITGGCMSPFNAWLTLRGVKTLGIRMER----HCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGI 312 (398)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHTTHHHHHHH----HHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSE
T ss_pred HHHhCCCCCCCHHHHHHHHhhhhhHHHHHHH----HHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceE
Confidence 55444 5677888899999999764333333 444555555555543 222222 24666
Q ss_pred EEeeecCCCCCCCHHHHHHHHHHhc---CeEEECCCCC
Q 013883 399 FVVVDHTPFGHETDIAFCEYLIKEV---GVVAIPTSVF 433 (434)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~Ll~~~---GV~v~pG~~F 433 (434)
+.| ++.. ..+.+.+++++. ||.+.+|+.|
T Consensus 313 ~~~-~~~~-----~~~~~~~l~~~~~~~~i~~~~G~~~ 344 (398)
T 2rfv_A 313 ISF-EIAG-----GLEAGRRMINSVELCLLAVSLGDTE 344 (398)
T ss_dssp EEE-EETT-----HHHHHHHHHTTCSSSEECSCCSSSS
T ss_pred EEE-EEcC-----CHHHHHHHHHhCCcceeccCCCCcc
Confidence 655 6632 223344455544 8888888654
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-29 Score=248.77 Aligned_cols=289 Identities=17% Similarity=0.125 Sum_probs=220.1
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC-CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc
Q 013883 113 NLGQGFPNFDGPDFVKDAAIQAIRDGKNQYAR-GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI 191 (434)
Q Consensus 113 ~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~ 191 (434)
+|+.|.|++++|+.+.+++.+++..+ .|++ ..+..+||++++++++ .+ ++++++|+++++.+++.++.
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~~~~~--~y~~~~~~~~~l~~~la~~~~--------~~-~v~~~~ggt~al~~~l~~l~ 88 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRALDSQ--WLSNGGPLVREFEERVAGLAG--------VR-HAVATCNATAGLQLLAHAAG 88 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHHHHHT--CCSSSCHHHHHHHHHHHHHHT--------SS-EEEEESCHHHHHHHHHHHHT
T ss_pred cccccCCCCCChHHHHHHHHHHHhcC--CcccCCHHHHHHHHHHHHHhC--------CC-eEEEeCCHHHHHHHHHHHcC
Confidence 68899999999999999998888764 5777 6788999999999986 24 79999999999999999885
Q ss_pred CCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHH
Q 013883 192 NPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLC 271 (434)
Q Consensus 192 ~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la 271 (434)
+||+|++++|+|+.+...+...|++++.++++++++.+|++.+++++++++++|+++ ||||... ++++|+++|
T Consensus 89 -~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~tG~~~---~l~~i~~la 161 (424)
T 2po3_A 89 -LTGEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGV---HLWGRPC---AADQLRKVA 161 (424)
T ss_dssp -CCSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEE---CGGGCCC---CHHHHHHHH
T ss_pred -CCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEE---CCCCCcC---CHHHHHHHH
Confidence 789999999999999999999999999999986678899999999998888998875 4899875 677899999
Q ss_pred HHcCcEEEEcCcCC-ccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC-hhhHHHHHHHhhccccC---
Q 013883 272 IENDVLVFSDEVYD-KLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLTFA--- 346 (434)
Q Consensus 272 ~~~~~~iI~Deay~-~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~~~~--- 346 (434)
+++|+++|+||+|. ++.+++. .+..+ .+ +++.||||..+++|+|+||++++ +++++.++.........
T Consensus 162 ~~~~~~li~Dea~~~g~~~~~~--~~~~~---~d--i~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~ 234 (424)
T 2po3_A 162 DEHGLRLYFDAAHALGCAVDGR--PAGSL---GD--AEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLPGG 234 (424)
T ss_dssp HHTTCEEEEECTTCTTCEETTE--ETTSS---SS--EEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCTTC
T ss_pred HHcCCEEEEECccccCCeECCe--ecccc---cC--EEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCcccccc
Confidence 99999999999999 5666542 22222 22 88999996666677999999999 88888887765432111
Q ss_pred -----Cc-hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeec-CCee---EE-EeeecCCC--CCCCH
Q 013883 347 -----TS-TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFP-SSGT---YF-VVVDHTPF--GHETD 412 (434)
Q Consensus 347 -----~~-~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~---~~-~~~~~~~~--~~~~~ 412 (434)
.+ .+.+.+++.++.. .+++++..++.+++++.+.+.|+++ |+.+.. ++++ ++ +++.+... +. +.
T Consensus 235 ~~~~g~~~~~~~~~aa~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 312 (424)
T 2po3_A 235 SPAGGTNAKMSEAAAAMGLTS-LDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGI-HR 312 (424)
T ss_dssp CTTCCCBCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHSS-CH
T ss_pred ccccCcCCCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccchh-hH
Confidence 00 1122233333332 2356667777788888899999887 888765 4433 23 33554310 22 46
Q ss_pred HHHHHHHHHhcCeEEEC
Q 013883 413 IAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 413 ~~~~~~Ll~~~GV~v~p 429 (434)
.++.+.|. ++||.+.+
T Consensus 313 ~~l~~~L~-~~gI~v~~ 328 (424)
T 2po3_A 313 DLVMEVLK-AEGVHTRA 328 (424)
T ss_dssp HHHHHHHH-HTTEECBC
T ss_pred HHHHHHHH-HCCCceec
Confidence 67877765 56999987
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=255.94 Aligned_cols=296 Identities=15% Similarity=0.134 Sum_probs=216.4
Q ss_pred CeeEeCCC---CCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 110 GAINLGQG---FPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 110 ~~i~l~~g---~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
..+||+.+ .+--.+++.+.+++.+++..... +... ...++++++++.+.+.+| .+ ++++++|+++++..+
T Consensus 41 ~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~-~~~~-~~~~~~~~l~~~la~~~g----~~-~v~~~~gg~~a~~~a 113 (397)
T 2ord_A 41 AYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH-CSNL-FWNRPQMELAELLSKNTF----GG-KVFFANTGTEANEAA 113 (397)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSC-CCTT-SEEHHHHHHHHHHHHTTT----SC-EEEEESSHHHHHHHH
T ss_pred EEEECCccccccccCCCCHHHHHHHHHHHHhccc-Cccc-cCCHHHHHHHHHHHHhcC----CC-eEEEeCCHHHHHHHH
Confidence 56888776 22112578899999988876322 2111 123556666666666555 45 899999999999999
Q ss_pred HHHccC------C-CCeEEEcCCCchhH-HHHHHHcCCE------------EEEEEcCCCCCCCCHHHHHhhcccCCcEE
Q 013883 187 ILGLIN------P-GDEVILFAPFYDSY-EATLSMAGAK------------IKCITLRPPDFAIPIEELKSTISKNTRAI 246 (434)
Q Consensus 187 ~~~l~~------~-gd~Vlv~~p~y~~~-~~~~~~~G~~------------~~~v~~~~~~~~~d~~~l~~~i~~~~~~i 246 (434)
+..+.. + +++|++.+|+|++. ...+...|.+ ++.++.+ |++.+++++++++++|
T Consensus 114 l~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~------d~~~l~~~l~~~~~~v 187 (397)
T 2ord_A 114 IKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFN------NVEDLRRKMSEDVCAV 187 (397)
T ss_dssp HHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTT------CHHHHHHHCCTTEEEE
T ss_pred HHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCC------CHHHHHHHhhcCeEEE
Confidence 988763 5 47899999999764 4467777876 6666653 8999999998889999
Q ss_pred EecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeee
Q 013883 247 LMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGW 325 (434)
Q Consensus 247 ~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~ 325 (434)
++++|+||||. +++.+++++|+++|++||+++|+||+|.++.+.+....+..+....+ +.||||.++ +|+|+||
T Consensus 188 ~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d----~~s~sK~~~-~G~r~G~ 262 (397)
T 2ord_A 188 FLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPD----VLTTAKGLG-GGVPIGA 262 (397)
T ss_dssp EECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCS----EEEECGGGG-TTSCCEE
T ss_pred EEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCC----eeeeccccC-CCcCeEE
Confidence 99999999999 99999999999999999999999999998766554333322321122 228899999 9999999
Q ss_pred EEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC--CCEe---ecCCeeEEE
Q 013883 326 AIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV--GFKV---FPSSGTYFV 400 (434)
Q Consensus 326 ~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~---~~~~~~~~~ 400 (434)
++++++++ .++......+++.+.+.+.++.++|+..++ ++++++++++++.+.+.|+++ ++.. .++.++ |+
T Consensus 263 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~-~~ 338 (397)
T 2ord_A 263 VIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTK--EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGL-MI 338 (397)
T ss_dssp EEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETT-EE
T ss_pred EEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeE-EE
Confidence 99998876 554333345677888999998888875322 456778888888888888765 3332 334444 55
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 401 VVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
++++.. . .+..+++++|++ +||.+.||
T Consensus 339 ~~~~~~-~-~~~~~l~~~l~~-~gi~v~~~ 365 (397)
T 2ord_A 339 GIQFRE-E-VSNREVATKCFE-NKLLVVPA 365 (397)
T ss_dssp EEEECT-T-SCHHHHHHHHHH-TTEECEEE
T ss_pred EEEECC-h-HHHHHHHHHHHH-CCCEEccC
Confidence 667643 1 247789888876 59999987
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=249.77 Aligned_cols=304 Identities=18% Similarity=0.191 Sum_probs=219.9
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHc-CCCCCCCCC---CcHH--HHHHHH-HHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRD-GKNQYARGH---GVPE--FNSAIA-SRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~-~~~~Y~~~~---G~~~--lr~~ia-~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+.|+|..|.+.+ ++.+.+++.+++.+ ....|+... |.+. ++++++ +.+.+.+|. +++ +|++++| +++
T Consensus 24 ~~i~~~~~~~~~--~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~--~~~-~i~~~sG-t~a 97 (407)
T 2dkj_A 24 EGLELIASENFV--SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGA--AWA-NVQPHSG-SQA 97 (407)
T ss_dssp TSEECCTTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEE-ECCCSSH-HHH
T ss_pred cceeeccCCCCC--CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCC--Ccc-eEEecch-HHH
Confidence 679999997766 78899888888764 334565432 5443 444322 355555554 344 5666776 569
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhH---HHHHHHcCC--EEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcc
Q 013883 183 IAATILGLINPGDEVILFAPFYDSY---EATLSMAGA--KIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTG 256 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~---~~~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG 256 (434)
+..++.+++++||+|++++|+|+.+ ...+...|. ..+.++.+++++.+|++.+++++++ ++++|++++|+||
T Consensus 98 ~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~-- 175 (407)
T 2dkj_A 98 NMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYP-- 175 (407)
T ss_dssp HHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCC--
T ss_pred HHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEeccccC--
Confidence 9999999999999999999999887 344455565 4444443444688999999999985 8999999999998
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcCcCCc-cccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC-hhhHH
Q 013883 257 KMFTREELNVIASLCIENDVLVFSDEVYDK-LAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTW 334 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~~~~iI~Deay~~-~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~ 334 (434)
...+ +++|.++|++||+++|+||+|.. +.+.+..... + ...++++.|+||.+ +|+|+||++++ +++++
T Consensus 176 ~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--~---~~~di~~~s~sK~l--~g~~~G~~~~~~~~~~~ 245 (407)
T 2dkj_A 176 RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNP--L---PYAHVVTSTTHKTL--RGPRGGLILSNDPELGK 245 (407)
T ss_dssp SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCC--T---TTCSEEEEESSGGG--CCCSCEEEEESCHHHHH
T ss_pred CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccCCc--c---ccccEEEEeccccC--CCCCceEEEECCHHHHH
Confidence 4443 78899999999999999999997 5444322211 1 12568899999955 58899999999 89998
Q ss_pred HHHHHhhccccCCchHH-HHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCEeec-CCeeEEEeeecCCCCCCC
Q 013883 335 GVRQAHSFLTFATSTPM-QWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFKVFP-SSGTYFVVVDHTPFGHET 411 (434)
Q Consensus 335 ~l~~~~~~~~~~~~~~~-q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 411 (434)
.++........+.+.+. ..++..+|+.. .+++++++++++++++.+.+.|++.|+++.. +..++++|+.+...+. +
T Consensus 246 ~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~ 324 (407)
T 2dkj_A 246 RIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRIVTGGTDNHLFLVDLRPKGL-T 324 (407)
T ss_dssp HHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTC-C
T ss_pred HHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCceeecCCCCceEEEEECcccCC-C
Confidence 88876644444444443 33556666652 3577889999999999999999999998874 3456677887753222 4
Q ss_pred HHHHHHHHHHhcCeEEECCCCC
Q 013883 412 DIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 412 ~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
..++.+.| .++||.+.||..|
T Consensus 325 ~~~~~~~l-~~~gi~v~~~~~~ 345 (407)
T 2dkj_A 325 GKEAEERL-DAVGITVNKNAIP 345 (407)
T ss_dssp HHHHHHHH-HHTTEECEECCCT
T ss_pred HHHHHHHH-HHcCceecCCcCc
Confidence 66788777 4569999998753
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-29 Score=247.51 Aligned_cols=266 Identities=14% Similarity=0.162 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcEE-EcCChHHHHHHHHHHccCCCCeEEEcCCCchh--HHHHHHHcCCEEEEEEcCC
Q 013883 149 PEFNSAIASRFKKDSGLEVDPEKEVT-VTSGCTEAIAATILGLINPGDEVILFAPFYDS--YEATLSMAGAKIKCITLRP 225 (434)
Q Consensus 149 ~~lr~~ia~~l~~~~g~~~~~~~~i~-~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~G~~~~~v~~~~ 225 (434)
.++.+.+.+.+.+.+|. +++ +++ +++|+++++..++.+++++||+|++++|+|++ +...++..|++++.++.++
T Consensus 43 ~~~~~~l~~~la~~~g~--~~~-~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 119 (416)
T 3isl_A 43 TGIMNETMEMLRELFQT--KNR-WAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEW 119 (416)
T ss_dssp HHHHHHHHHHHHHHTTC--CCS-EEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred HHHHHHHHHHHHHHhCC--CCC-cEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCC
Confidence 34455555555555553 344 455 88999999999999999999999999999998 7778899999999999885
Q ss_pred CCCCCCHHHHHhhcc-cCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCC
Q 013883 226 PDFAIPIEELKSTIS-KNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYE 304 (434)
Q Consensus 226 ~~~~~d~~~l~~~i~-~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~ 304 (434)
++.+|++.++++++ +++++|++++||||||.+.+ +++|.++|++||+++|+|++|..... ...+. ..+
T Consensus 120 -~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~---~~~~~----~~~ 188 (416)
T 3isl_A 120 -GTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHP---LKAIGEACRTEDALFIVDAVATIGGC---EVKVD----EWK 188 (416)
T ss_dssp -TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTTTS---CCCTT----TTT
T ss_pred -CCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecC---HHHHHHHHHHcCCEEEEECCccccCC---Ccchh----hcC
Confidence 56889999999998 58999999999999999987 67799999999999999999874321 11111 123
Q ss_pred ceEEEccCChhhccccceeeeEEeChhhHHHHHHHh--------------------------------------hccccC
Q 013883 305 RTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAH--------------------------------------SFLTFA 346 (434)
Q Consensus 305 ~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~--------------------------------------~~~~~~ 346 (434)
..+++.|++|.++ .+.++|++++++++++.+...+ .....+
T Consensus 189 ~d~~~~s~~K~l~-g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (416)
T 3isl_A 189 IDAAIGGTQKCLS-VPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHT 267 (416)
T ss_dssp CSEEECCSSSTTC-CCSSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSC
T ss_pred CCEEEecCccccC-CCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCC
Confidence 5688999999754 3456999999999988776321 112335
Q ss_pred CchHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHHHHHhhhCCCEeecCCe---eEEEeeecCCCCCCCHHHHHHHHHHh
Q 013883 347 TSTPMQWAATAALRAPETY-YEELKRDYSAKKAILVEGLNAVGFKVFPSSG---TYFVVVDHTPFGHETDIAFCEYLIKE 422 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Ll~~ 422 (434)
.+...+.++..+|+...++ +++++++++++++.+.+.|++.|+++..+.+ +.++++.++. +. +..++.++|+++
T Consensus 268 ~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~~-~~~~l~~~L~~~ 345 (416)
T 3isl_A 268 EATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCVEIPG-GI-DGESVRDMLLAQ 345 (416)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCTTEEEEECCT-TC-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCCcEEEEeCCC-CC-CHHHHHHHHHHh
Confidence 5667777777777765555 7889999999999999999999988877654 4456666532 22 578899999887
Q ss_pred cCeEEECCC
Q 013883 423 VGVVAIPTS 431 (434)
Q Consensus 423 ~GV~v~pG~ 431 (434)
+||.+.||.
T Consensus 346 ~gi~v~~g~ 354 (416)
T 3isl_A 346 FGIEIASSF 354 (416)
T ss_dssp HCEECBCCC
T ss_pred CCEEEecCC
Confidence 799999885
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=244.87 Aligned_cols=288 Identities=16% Similarity=0.135 Sum_probs=212.3
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCCC-CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEE
Q 013883 121 FDGPDFVKDAAIQAIRDGKNQYAR-GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVIL 199 (434)
Q Consensus 121 ~~~~~~v~~~~~~~~~~~~~~Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv 199 (434)
.+.++.+.+++.+.+.. +.|.. ..+..++|++++++++ .+.+++ +|++|+|+++++.+++.++++ |+|++
T Consensus 9 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g----~~~~~~-~v~~t~g~t~a~~~~~~~~~~--d~vl~ 79 (353)
T 2yrr_A 9 TPIPERVQKALLRPMRG--HLDPEVLRVNRAIQERLAALFD----PGEGAL-VAALAGSGSLGMEAGLANLDR--GPVLV 79 (353)
T ss_dssp CCCCHHHHGGGGSCCCC--TTCHHHHHHHHHHHHHHHHHHC----CCTTCE-EEEESSCHHHHHHHHHHTCSC--CCEEE
T ss_pred CCCCHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhC----CCCCCc-eEEEcCCcHHHHHHHHHHhcC--CcEEE
Confidence 45567777776555432 22221 1234566777766664 333455 899999999999999998877 89999
Q ss_pred cCCCchhH--HHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCc
Q 013883 200 FAPFYDSY--EATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDV 276 (434)
Q Consensus 200 ~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~ 276 (434)
++|.|+++ ...++..|++++.++.++ ++.+|++.+++++++ ++++|++++|+||||.+++ +++|.++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~ 155 (353)
T 2yrr_A 80 LVNGAFSQRVAEMAALHGLDPEVLDFPP-GEPVDPEAVARALKRRRYRMVALVHGETSTGVLNP---AEAIGALAKEAGA 155 (353)
T ss_dssp EECSHHHHHHHHHHHHTTCCEEEEECCT-TSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC---HHHHHHHHHHHTC
T ss_pred EcCCCchHHHHHHHHHcCCceEEEeCCC-CCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecC---HHHHHHHHHHcCC
Confidence 99999985 455677899999999975 677999999999988 8999999999999999997 5678999999999
Q ss_pred EEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhh-ccccceeeeEEeChhhHHHHHH-------------H--h
Q 013883 277 LVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTF-SLTGWKIGWAIAPPHLTWGVRQ-------------A--H 340 (434)
Q Consensus 277 ~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-g~~G~R~G~~~~~~~~~~~l~~-------------~--~ 340 (434)
++|+||+|.... ....+..+ +..+++.|++|.+ |.+| +||+++++++++.++. . .
T Consensus 156 ~li~D~a~~~~~---~~~~~~~~----~~d~~~~s~~K~~~~~~g--~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 226 (353)
T 2yrr_A 156 LFFLDAVTTLGM---LPFSMRAM----GVDYAFTGSQKCLSAPPG--LAPIAASLEARKAFTGKRGWYLDLARVAEHWER 226 (353)
T ss_dssp EEEEECTTTTTT---SCCCHHHH----TCSEEECCTTSTTCCCSS--CEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTT
T ss_pred eEEEEcCccccc---cccccccc----CceEEEecCcccccCCCc--eEEEEECHHHHHHhccCCCccccHHHHhhhhhc
Confidence 999999996321 11122111 2357889999966 4455 7999999998866531 0 1
Q ss_pred hccccCCchHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHHHHHhhhCCCEeecCC--eeEEEeeecCCCCCCCHHHHHH
Q 013883 341 SFLTFATSTPMQWAATAALRAPETY-YEELKRDYSAKKAILVEGLNAVGFKVFPSS--GTYFVVVDHTPFGHETDIAFCE 417 (434)
Q Consensus 341 ~~~~~~~~~~~q~a~~~~L~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 417 (434)
.....+.+...+.++..+|+...++ +++++++++++++.+.+.|++.|+++..+. +++++++.++. +. +..++++
T Consensus 227 ~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 304 (353)
T 2yrr_A 227 GGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLVVRPPE-GV-DADRLVR 304 (353)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTTEEEEECCT-TC-CHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCeEEEEECCC-CC-CHHHHHH
Confidence 2223456667777777777654333 778889999999999999998898887654 56666777632 22 5778988
Q ss_pred HHHHhcCeEEECCCCC
Q 013883 418 YLIKEVGVVAIPTSVF 433 (434)
Q Consensus 418 ~Ll~~~GV~v~pG~~F 433 (434)
+|.++ ||.+.||..|
T Consensus 305 ~l~~~-gi~v~~g~~~ 319 (353)
T 2yrr_A 305 ALYAE-GVAVAGGIGP 319 (353)
T ss_dssp HHHHT-TEECEECCGG
T ss_pred HHHHC-CEEEeCCccc
Confidence 88766 9999998754
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-29 Score=250.58 Aligned_cols=311 Identities=15% Similarity=0.094 Sum_probs=203.8
Q ss_pred CeeEeCCC--CCCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 110 GAINLGQG--FPNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 110 ~~i~l~~g--~p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
..+||..+ ...+. .+|.+.+++.+++.+. ..|.+..+..++++++++++.+.++. +.+ +|++++|+++++..+
T Consensus 30 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~~--~~~-~v~~~~gg~ea~~~a 105 (430)
T 3i4j_A 30 RYLDGSSGALVANIGHGRAEVGERMAAQAARL-PFVHGSQFSSDVLEEYAGRLARFVGL--PTF-RFWAVSGGSEATESA 105 (430)
T ss_dssp EEEETTHHHHTCTTCBCCHHHHHHHHHHHHHC-CCCCTTTCEEHHHHHHHHHHHHHTTC--TTC-EEEEESSHHHHHHHH
T ss_pred EEEECCCchhccccCCCCHHHHHHHHHHHHhc-ccccccccCCHHHHHHHHHHHHhCCC--CCC-EEEEeCcHHHHHHHH
Confidence 57888776 22233 3788999999888764 33544456677888888888877763 456 899999999999999
Q ss_pred HHHcc--------CCCCeEEEcCCCchhHHHHHHHcCCE---------------EEEEEcCCCC---CCCCHHHHHhhcc
Q 013883 187 ILGLI--------NPGDEVILFAPFYDSYEATLSMAGAK---------------IKCITLRPPD---FAIPIEELKSTIS 240 (434)
Q Consensus 187 ~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~G~~---------------~~~v~~~~~~---~~~d~~~l~~~i~ 240 (434)
++.++ .++|.|++.+|+|+++...+...+.. +..++.++ . ...|++.|+++++
T Consensus 106 l~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~le~~l~ 184 (430)
T 3i4j_A 106 VKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPD-PARNGAEDAEGLRALLE 184 (430)
T ss_dssp HHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCC-TTSCHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCc-ccchhhHHHHHHHHHHH
Confidence 98886 44789999999999987665544432 22222221 1 1125688888886
Q ss_pred ----cCCcEEEecCCCC-Cccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCCh
Q 013883 241 ----KNTRAILMNTPHN-PTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGK 314 (434)
Q Consensus 241 ----~~~~~i~~~~p~N-PTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK 314 (434)
+++++|+++.++| ++|. +++.+++++|+++|++||+++|+||+|.+|.+.+.......+++...+ +.+|||
T Consensus 185 ~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~d---i~t~sK 261 (430)
T 3i4j_A 185 REGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPD---IAVLGK 261 (430)
T ss_dssp HHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCS---EEEECG
T ss_pred hcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCc---EEEEcc
Confidence 3344555544566 8887 668888999999999999999999999998776654443333111122 347999
Q ss_pred hhcccc-ceeeeEEeChhhHHHHHHH----hhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhC
Q 013883 315 TFSLTG-WKIGWAIAPPHLTWGVRQA----HSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 315 ~~g~~G-~R~G~~~~~~~~~~~l~~~----~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (434)
.++ .| +|+||+++++++++.+... ....+++.+++++.++.++|+.. +++.++.++..+..++.+.+.+.+.
T Consensus 262 ~l~-~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (430)
T 3i4j_A 262 GLA-AGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARF 340 (430)
T ss_dssp GGT-TTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccc-CCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999 69 9999999999999988864 34467888999999999988742 3344555555555555555555444
Q ss_pred -CCEeecCCeeEEEeeecCCCC-------CCCHHHHHHHHHHhcCeEEECCC
Q 013883 388 -GFKVFPSSGTYFVVVDHTPFG-------HETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 388 -g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
++...++.|.|+ ++.+.... .....+++++|++ +||.+.|+.
T Consensus 341 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~ 390 (430)
T 3i4j_A 341 PQMMQVRGTGLLL-GVVLGDLATGQAFETPGIASRIGAAALK-RGLITYPGS 390 (430)
T ss_dssp TTEEEEEEETTEE-EEEEC------------CHHHHHHHHHH-TTEECC---
T ss_pred CCeEEEEEEEEEE-EEEeccccccCCCccHHHHHHHHHHHHh-CCCEEEecc
Confidence 456666666654 44442210 1123578888875 599999983
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=245.09 Aligned_cols=289 Identities=13% Similarity=0.137 Sum_probs=215.1
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcC
Q 013883 122 DGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFA 201 (434)
Q Consensus 122 ~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~ 201 (434)
+.++.+.+++.+.+ ...|.+ ...++.+.+.+.+.+.+|.+ .++.+++++|+++++..++.+++++||+|++++
T Consensus 23 ~~~~~v~~a~~~~~---~~~~~~--~~~~~~~~~~~~la~~~~~~--~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~ 95 (411)
T 3nnk_A 23 NADPRVLRAMSSQL---IGQYDP--AMTHYMNEVMALYRGVFRTE--NRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPV 95 (411)
T ss_dssp CCCHHHHHHHTSCC---CCTTCH--HHHHHHHHHHHHHHHHHTCC--CSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCHHHHHHhhccc---cccccH--HHHHHHHHHHHHHHHHhCCC--CCcEEEECCCcHHHHHHHHHHhcCCCCEEEEec
Confidence 34566665554322 122222 22344444555555555543 342488899999999999999999999999999
Q ss_pred CCchh--HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEE
Q 013883 202 PFYDS--YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLV 278 (434)
Q Consensus 202 p~y~~--~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~i 278 (434)
|+|++ +...++..|++++.++.++ ++.+|++.+++++++ ++++|++++|+||||.+.+ +++|+++|++||+++
T Consensus 96 ~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~l 171 (411)
T 3nnk_A 96 FGRFGHLLCEIARRCRAEVHTIEVPW-GEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQP---LAELGEICRRYDALF 171 (411)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEE
T ss_pred CCchHHHHHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceecc---HHHHHHHHHHcCCEE
Confidence 99987 8888999999999999864 678899999999987 8999999999999999987 667999999999999
Q ss_pred EEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHh------------------
Q 013883 279 FSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAH------------------ 340 (434)
Q Consensus 279 I~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~------------------ 340 (434)
|+||++..... ..... ..+..+++.|++|.++ .+.++||+++++++++.++...
T Consensus 172 i~Dea~~~~~~---~~~~~----~~~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~ 243 (411)
T 3nnk_A 172 YTDATASLGGN---PLETD----VWGLDAVSAGMQKCLG-GPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEM 243 (411)
T ss_dssp EEECTTTBTTB---CCCTT----TTTCSEEECCSTTTTC-CCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCC
T ss_pred EEECCcccCCc---ccchh----ccCCcEEEecCccccC-CCCceEEEEECHHHHHHHhhcccccccccccccccccCCC
Confidence 99999865221 11111 1245688999999854 3456999999999988877543
Q ss_pred ------------------hccccCCchHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHHHHHhhhCCCEeecCCe---eE
Q 013883 341 ------------------SFLTFATSTPMQWAATAALRAPETY-YEELKRDYSAKKAILVEGLNAVGFKVFPSSG---TY 398 (434)
Q Consensus 341 ------------------~~~~~~~~~~~q~a~~~~L~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---~~ 398 (434)
.....+.+...+.++..+|+...++ +++++++++++++.+.+.|++.|+.+..+.+ +.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 323 (411)
T 3nnk_A 244 IYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNN 323 (411)
T ss_dssp CSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSS
T ss_pred CcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCccccccc
Confidence 1122455666777777777754444 7888999999999999999999988876553 45
Q ss_pred EEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 399 FVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
++++.++. +. +..+++++|++++||.+.||.
T Consensus 324 ~~~~~~~~-~~-~~~~l~~~l~~~~gi~v~~g~ 354 (411)
T 3nnk_A 324 VLGVVIPQ-GI-NGDQARKLMLEDFGIEIGTSF 354 (411)
T ss_dssp EEEEECCT-TC-CHHHHHHHHHHHHSEEEEECC
T ss_pred EEEEECCC-CC-CHHHHHHHHHHhcCeEEeCcc
Confidence 66666532 22 577899999887899999974
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-29 Score=250.77 Aligned_cols=300 Identities=15% Similarity=0.117 Sum_probs=210.7
Q ss_pred CeeEeCCCCC--CCCC--cHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 110 GAINLGQGFP--NFDG--PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 110 ~~i~l~~g~p--~~~~--~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
..+||..|.+ .+.. ++.+.+++.+++.+.. .|.+..+..+++.++++.+.+.+|.+. ++ +|++++|+++++..
T Consensus 43 ~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~-~~-~v~~~~gg~ea~~~ 119 (419)
T 2eo5_A 43 KYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLA-HAAANDFYNIPQLELAKKLVTYSPGNF-QK-KVFFSNSGTEAIEA 119 (419)
T ss_dssp EEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSC-CCSCSCSCCHHHHHHHHHHHHHSSCSS-CE-EEEEESSHHHHHHH
T ss_pred EEEEccCChhhhccCCCCCHHHHHHHHHHHhhCc-cccccccCCHHHHHHHHHHHHhCCCCc-CC-EEEEeCchHHHHHH
Confidence 5789987753 3332 7899999999886543 244333444667777777777777543 56 89999999999999
Q ss_pred HHHHccC-CCCeEEEcCCCchhHHHHHH-HcC-------------CEEEEEEcCCCCC----C------------CCHHH
Q 013883 186 TILGLIN-PGDEVILFAPFYDSYEATLS-MAG-------------AKIKCITLRPPDF----A------------IPIEE 234 (434)
Q Consensus 186 ~~~~l~~-~gd~Vlv~~p~y~~~~~~~~-~~G-------------~~~~~v~~~~~~~----~------------~d~~~ 234 (434)
+++.+.. +||+|++.+|+|+++..... ..| .+++.+|++. ++ + +|++.
T Consensus 120 ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~g~~~~~~~~~~~~~~~~~ 198 (419)
T 2eo5_A 120 SIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPN-PYRNPWHINGYENPSELVNRVIEF 198 (419)
T ss_dssp HHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCC-SSSCTTCCCTTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCc-cccccccccccccchhhHHHHHHH
Confidence 9987654 48999999999986544322 221 3567777753 22 2 36889
Q ss_pred HH-hhccc-----CCcEEEecCC-CCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCce
Q 013883 235 LK-STISK-----NTRAILMNTP-HNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERT 306 (434)
Q Consensus 235 l~-~~i~~-----~~~~i~~~~p-~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~ 306 (434)
|+ +++++ ++++| +++| |||||. +++.+++++|+++|++||+++|+||+|.+|.+.+....+... +...+
T Consensus 199 l~~~~i~~~~~~~~~~~v-i~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~-~~~~d- 275 (419)
T 2eo5_A 199 IEDYIFVNLVPPEEVAGI-FFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENF-NTVPD- 275 (419)
T ss_dssp HHHTHHHHTCCGGGEEEE-EECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGG-TCCCS-
T ss_pred HHHHHHhhccCCCCEEEE-EEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhc-CCCCC-
Confidence 99 88863 34444 4566 567896 678888999999999999999999999988765543222222 12223
Q ss_pred EEEccCChhhcccc-ceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhh
Q 013883 307 VTMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLN 385 (434)
Q Consensus 307 i~i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~ 385 (434)
+.||||.+| .| +|+||++++++++ .+ ......+++.+.+++.++.++|+.. ++++++++++++.+.+.|+
T Consensus 276 --~~t~sK~~~-~G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~~~~aa~aal~~~----~~~~~~~~~~~~~l~~~L~ 346 (419)
T 2eo5_A 276 --VITLAKALG-GGIMPIGATIFRKDLD-FK-PGMHSNTFGGNALACAIGSKVIDIV----KDLLPHVNEIGKIFAEELQ 346 (419)
T ss_dssp --EEEECGGGG-TTTSCCEEEEEEGGGC-CC-------CCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHT
T ss_pred --EEEeccccc-CCccceEEEEEchHhh-cC-CcccCCCCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 338999999 69 9999999998887 66 3233457888999999999999852 2377889999999999998
Q ss_pred hCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 386 AVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
++ +...++.|. |+++++.+.. .... ++++|+ ++||.+.|+
T Consensus 347 ~~-~~~~~~~g~-~~~i~~~~~~-~~~~-~~~~l~-~~Gv~v~~~ 386 (419)
T 2eo5_A 347 GL-ADDVRGIGL-AWGLEYNEKK-VRDR-IIGESF-KRGLLLLPA 386 (419)
T ss_dssp TS-SSEEEEETT-EEEEECSCHH-HHHH-HHHHHH-HTTEECEEE
T ss_pred Hh-hhheEeeeE-EEEEEEecCc-cHHH-HHHHHH-HCCCEEecC
Confidence 87 444455555 4566663211 1244 888887 459999986
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=242.69 Aligned_cols=291 Identities=14% Similarity=0.123 Sum_probs=211.6
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEc
Q 013883 121 FDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILF 200 (434)
Q Consensus 121 ~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~ 200 (434)
.+.++.+.+++.+.+ ...|.+ +..++.+++.+.+.+.+|.+ .+++|++++|+++++..++.+++++||+|+++
T Consensus 32 ~~~~~~v~~a~~~~~---~~~~~~--~~~~~~~~l~~~la~~~~~~--~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~ 104 (393)
T 3kgw_A 32 SNLAPRVLAAGSLRM---IGHMQK--EMLQIMEEIKQGIQYVFQTR--NPLTLVVSGSGHCAMETALFNLLEPGDSFLTG 104 (393)
T ss_dssp CCCCHHHHHHTTCCC---CCTTSH--HHHHHHHHHHHHHHHHHTCC--CSEEEEESCCTTTHHHHHHHHHCCTTCEEEEE
T ss_pred CCCCHHHHHHhcccc---cCcccH--HHHHHHHHHHHHHHHHhCCC--CCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEE
Confidence 345666666554321 112222 12233444444444444432 33259999999999999999999999999999
Q ss_pred CCCchh--HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcE
Q 013883 201 APFYDS--YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVL 277 (434)
Q Consensus 201 ~p~y~~--~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~ 277 (434)
.+.|++ +...+...|++++.+++++ ++.+|++.+++++++ ++++|++++||||||.+++ +++|.++|++||++
T Consensus 105 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~ 180 (393)
T 3kgw_A 105 TNGIWGMRAAEIADRIGARVHQMIKKP-GEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQP---LDGFGELCHRYQCL 180 (393)
T ss_dssp ESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHTTCE
T ss_pred eCCchhHHHHHHHHHcCCceEEEeCCC-CCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhcc---HHHHHHHHHHcCCE
Confidence 999864 3677888999999999875 567999999999988 9999999999999999997 66799999999999
Q ss_pred EEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhh----------------
Q 013883 278 VFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHS---------------- 341 (434)
Q Consensus 278 iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~---------------- 341 (434)
+|+||+|.... ....+. ..+..+++.|++|.++ .+.++||+++++++++.+.....
T Consensus 181 li~De~~~~g~---~~~~~~----~~~~d~~~~s~sK~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (393)
T 3kgw_A 181 LLVDSVASLGG---VPIYMD----QQGIDIMYSSSQKVLN-APPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLW 252 (393)
T ss_dssp EEEECTTTTTT---SCCCTT----TTTCCEEEEESSSTTC-CCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHT
T ss_pred EEEECCccccC---cccchh----hcCCCEEEecCccccc-CCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhh
Confidence 99999987421 111111 1245688899999874 34459999999999887764321
Q ss_pred -------ccccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCC----eeEEEeeecCCCCC
Q 013883 342 -------FLTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSS----GTYFVVVDHTPFGH 409 (434)
Q Consensus 342 -------~~~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~~~~~~~~~~~~~ 409 (434)
...++.+...+.++..+++.. ++++++++++++++++.+.+.|+++|+++..+. .++++++.+.. +
T Consensus 253 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~- 330 (393)
T 3kgw_A 253 GCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPA-G- 330 (393)
T ss_dssp TCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCT-T-
T ss_pred hhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCCC-C-
Confidence 113455666777777777643 234788899999999999999999998876433 35566666532 2
Q ss_pred CCHHHHHHHHHHhcCeEEECCCC
Q 013883 410 ETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 410 ~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
.+..++.++|++++||.+.||..
T Consensus 331 ~~~~~~~~~l~~~~gi~v~~g~~ 353 (393)
T 3kgw_A 331 YNWRDIVSYVLDHFSIEISGGLG 353 (393)
T ss_dssp BCHHHHHHHHHHHHCEECBCCCG
T ss_pred CCHHHHHHHHHHhCCEEEeCCcc
Confidence 25778999998877999999864
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=249.33 Aligned_cols=299 Identities=17% Similarity=0.145 Sum_probs=211.9
Q ss_pred CeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 110 GAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 110 ~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
..+||+.|. ..+. +++.+.+++.+++..... +...+ ..++++++.+.+.+.++. +++ +|++++|+++++.++
T Consensus 46 ~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~-~~~~~-~~~~~~~l~~~la~~~~~--~~~-~v~~~~gg~~a~~~a 120 (395)
T 1vef_A 46 EYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMA-MPQTL-PTPMRGEFYRTLTAILPP--ELN-RVFPVNSGTEANEAA 120 (395)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCC-CCTTS-CCHHHHHHHHHHHHTSCT--TEE-EEEEESSHHHHHHHH
T ss_pred EEEEccCccccccCCCCCHHHHHHHHHHHHhCCC-Ccccc-CCHHHHHHHHHHHHhcCC--CcC-EEEEcCcHHHHHHHH
Confidence 578988774 3343 788899999998876322 21111 124455555555555543 466 899999999999999
Q ss_pred HHHcc--CCCCeEEEcCCCchh-HHHHHHHcCCE------------EEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCC
Q 013883 187 ILGLI--NPGDEVILFAPFYDS-YEATLSMAGAK------------IKCITLRPPDFAIPIEELKSTISKNTRAILMNTP 251 (434)
Q Consensus 187 ~~~l~--~~gd~Vlv~~p~y~~-~~~~~~~~G~~------------~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p 251 (434)
+.++. .+||+|++.+|+|++ +...+...|.+ +..++. .|++.+++++++++++|+++.+
T Consensus 121 l~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~------~d~~~l~~~i~~~~~~v~~~~~ 194 (395)
T 1vef_A 121 LKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY------NDVEALKRAVDEETAAVILEPV 194 (395)
T ss_dssp HHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT------TCHHHHHHHCCTTEEEEEECSE
T ss_pred HHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCC------CcHHHHHHHhccCEEEEEEeCc
Confidence 98764 678999999999975 44566667765 333322 4899999999888888887777
Q ss_pred CCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeCh
Q 013883 252 HNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP 330 (434)
Q Consensus 252 ~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~ 330 (434)
+||||.++ +.+++++|+++|++||+++|+||+|.++.+.+....+... +...+++ ||||.++ .|+|+||+++++
T Consensus 195 ~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~-~~~~d~~---s~sK~~~-~g~~~G~~~~~~ 269 (395)
T 1vef_A 195 QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHF-GIVPDIL---TLAKALG-GGVPLGVAVMRE 269 (395)
T ss_dssp ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHH-TCCCSEE---EECGGGG-TTSSCEEEEEEH
T ss_pred cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhc-CCCCCEE---EEccccc-CCCceEEEEehH
Confidence 89999764 6888999999999999999999999976544432221111 1112222 8899999 599999999998
Q ss_pred hhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEe--ecCCeeEEEeeecCCCC
Q 013883 331 HLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKV--FPSSGTYFVVVDHTPFG 408 (434)
Q Consensus 331 ~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~~~~~~~~~~~~~~~ 408 (434)
++++.++......+++.+.+.+.++..+|+..++ ++..++++++++.+.+.|++++.++ ..+..+.++|+++..
T Consensus 270 ~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~~~~-- 345 (395)
T 1vef_A 270 EVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLER--TRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKE-- 345 (395)
T ss_dssp HHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESS--
T ss_pred HHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEEEEEEEEcC--
Confidence 8776665422334567788888888888875332 3467788889999999998876421 122344567777643
Q ss_pred CCCHHHHHHHHHHhcCeEEECC
Q 013883 409 HETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 409 ~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
+..+++++|++++||.+.||
T Consensus 346 --~~~~l~~~l~~~~gi~v~~~ 365 (395)
T 1vef_A 346 --KAAPYIARLEKEHRVLALQA 365 (395)
T ss_dssp --CSHHHHHHHHHHHCEECEES
T ss_pred --hHHHHHHHHHHHCCeEEecC
Confidence 25678888874569999986
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-29 Score=252.88 Aligned_cols=299 Identities=19% Similarity=0.152 Sum_probs=212.2
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
..+||..+.+. +.+.+++.+++..+...|.+..+..+|+++++++++ .+ +|++|+|+++|+.+++.+
T Consensus 44 ~ylD~~~~~~~----~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~--------~~-~v~~t~ggt~A~~~al~~ 110 (467)
T 1ax4_A 44 VYIDLLTDSGT----NAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELFN--------YD-YIIPAHQGRGAENILFPV 110 (467)
T ss_dssp CSEECSCSSSC----CCEEHHHHHHHHTCCCCSSSCHHHHHHHHHHHHHHC--------CC-EEEEESSHHHHHHHHHHH
T ss_pred eeeecccCcCC----HHHHHHHHHHHhhcccccccCccHHHHHHHHHHHcC--------CC-cEEEcCCcHHHHHHHHHH
Confidence 45666544332 456666666666655678877788999999999986 24 899999999999999999
Q ss_pred ccC----CCCe---EEEcCCCchhHHHHHHHcCCEEEEEEcCC---------CCCCCCHHHHHhhccc----CCcEEEec
Q 013883 190 LIN----PGDE---VILFAPFYDSYEATLSMAGAKIKCITLRP---------PDFAIPIEELKSTISK----NTRAILMN 249 (434)
Q Consensus 190 l~~----~gd~---Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~---------~~~~~d~~~l~~~i~~----~~~~i~~~ 249 (434)
+++ +||+ |+++.+.|..+...+...|++++.++... .++.+|++.|++++++ ++++|+++
T Consensus 111 ~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~ 190 (467)
T 1ax4_A 111 LLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVST 190 (467)
T ss_dssp HHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEE
T ss_pred HHHhhccCCCccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEe
Confidence 988 9998 99998888888888999999988776431 1356899999999974 68999999
Q ss_pred CCCCCc-ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCc--c--------ccCCCCccccCCC----CCCCceEEEccCCh
Q 013883 250 TPHNPT-GKMFTREELNVIASLCIENDVLVFSDEVYDK--L--------AFEMDHISIASLP----GMYERTVTMNSLGK 314 (434)
Q Consensus 250 ~p~NPT-G~~~~~e~l~~i~~la~~~~~~iI~Deay~~--~--------~~~~~~~~~~~~~----~~~~~~i~i~S~SK 314 (434)
+||||| |.+++.+++++|+++|++||+++|+||++.. . .+.+ .++..+. ...+ +++.|+||
T Consensus 191 ~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d--~~~~s~sK 266 (467)
T 1ax4_A 191 VTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKN--ATIKEVIFDMYKYAD--ALTMSAKK 266 (467)
T ss_dssp SSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTT--CCHHHHHHHHGGGCS--EEEEETTS
T ss_pred ccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCC--Cchhhhhhhhccccc--eEEEeccc
Confidence 999999 8999999999999999999999999998643 1 1111 1111111 1112 45689999
Q ss_pred hhccc-cceeeeEEeC-h-hhHHHHHHHhhc----cccC-CchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh
Q 013883 315 TFSLT-GWKIGWAIAP-P-HLTWGVRQAHSF----LTFA-TSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA 386 (434)
Q Consensus 315 ~~g~~-G~R~G~~~~~-~-~~~~~l~~~~~~----~~~~-~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~ 386 (434)
.+|++ | ||++++ + ++++.+...+.. ..++ .+...+.++..+|+...+ ++..++..++++.+.+.|++
T Consensus 267 ~~g~~~G---g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~ 341 (467)
T 1ax4_A 267 DPLLNIG---GLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE--EEYLHYRIGQVKYLGDRLRE 341 (467)
T ss_dssp TTCCSSC---EEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcc---eEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHh
Confidence 99865 3 677777 6 788877655431 1222 222233333334543211 11222334667788888887
Q ss_pred CCCEeecCCeeEEEeee-------cCCCCCCCHHHHHHHHHHhcCeEEEC-CC
Q 013883 387 VGFKVFPSSGTYFVVVD-------HTPFGHETDIAFCEYLIKEVGVVAIP-TS 431 (434)
Q Consensus 387 ~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~Ll~~~GV~v~p-G~ 431 (434)
.|+.+..+.+++++|++ +...+. +..+++++|++++||.+.| |+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~v~~~g~ 393 (467)
T 1ax4_A 342 AGIPIQYPTGGHAVFVDCKKLVPQIPGDQF-PAQAVINALYLESGVRAVEIGS 393 (467)
T ss_dssp TTCCBCSSCCSSEEEEESTTTCTTSCGGGC-HHHHHHHHHHHHHCEECEEESH
T ss_pred CCCCcccCCCceEEEEehhhhccccccCCC-CHHHHHHHHHHhcCceeeecCc
Confidence 78888778888899988 321111 3667888886677999999 54
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=246.74 Aligned_cols=301 Identities=16% Similarity=0.160 Sum_probs=214.5
Q ss_pred CCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...+||..|. ..+. .++.+.+++.+++++..+ +.. .+..++++++++.+.+..| .+ +|++++|+++|+..
T Consensus 57 ~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~-~~~-~~~~~~~~~l~~~la~~~g----~~-~v~~~~ggteA~~~ 129 (420)
T 2pb2_A 57 KEYIDFAGGIAVTALGHCHPALVEALKSQGETLWH-TSN-VFTNEPALRLGRKLIDATF----AE-RVLFMNSGTEANET 129 (420)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCC-CCT-TSCCHHHHHHHHHHHHHSS----CS-EEEEESSHHHHHHH
T ss_pred CEEEEccccccccccCCCCHHHHHHHHHHHHhccc-ccC-ccCCHHHHHHHHHHHhhCC----CC-eEEEeCCHHHHHHH
Confidence 3578998762 2222 578899999988865322 222 1234667777777776665 45 89999999999999
Q ss_pred HHHHccC-------CC-CeEEEcCCCchhHHH-HHHHcCCE------------EEEEEcCCCCCCCCHHHHHhhcccCCc
Q 013883 186 TILGLIN-------PG-DEVILFAPFYDSYEA-TLSMAGAK------------IKCITLRPPDFAIPIEELKSTISKNTR 244 (434)
Q Consensus 186 ~~~~l~~-------~g-d~Vlv~~p~y~~~~~-~~~~~G~~------------~~~v~~~~~~~~~d~~~l~~~i~~~~~ 244 (434)
+++.+.. +| ++|++.+|+|+++.. .+...|.+ +..+|.. |++.|+++++++++
T Consensus 130 al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~------d~~~le~~i~~~~~ 203 (420)
T 2pb2_A 130 AFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFN------DLHAVKAVMDDHTC 203 (420)
T ss_dssp HHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTT------CHHHHHHHCCTTEE
T ss_pred HHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCC------CHHHHHHHhccCce
Confidence 9998865 67 599999999987643 44455543 4555432 79999999998899
Q ss_pred EEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccccee
Q 013883 245 AILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKI 323 (434)
Q Consensus 245 ~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~ 323 (434)
+|+++.++|++|+ +++.+++++|.++|++||+++|+||+|.++.+.+....+..+. ...+++ ||||.++ +|+|+
T Consensus 204 ~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~-~~~dii---t~sK~l~-~G~~i 278 (420)
T 2pb2_A 204 AVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYG-VTPDIL---TSAKALG-GGFPV 278 (420)
T ss_dssp EEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHT-CCCSEE---EECGGGG-TTSCC
T ss_pred EEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcC-CCCCeE---Eeccccc-CCCce
Confidence 9999888988884 6899999999999999999999999999876665433222221 112333 7899999 99999
Q ss_pred eeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC--CC---EeecCCeeE
Q 013883 324 GWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV--GF---KVFPSSGTY 398 (434)
Q Consensus 324 G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~---~~~~~~~~~ 398 (434)
||+++++++++.+.......+++.+.+.+.++.++|+..++ +++.++++++++++.+.|+++ ++ ...++.|.
T Consensus 279 G~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~- 355 (420)
T 2pb2_A 279 SAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINT--PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGL- 355 (420)
T ss_dssp EEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETT-
T ss_pred EEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecce-
Confidence 99999998877665544456788899999999888875321 355677778888888887664 22 23344444
Q ss_pred EEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 399 FVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
|+++++......+..+++++|++ +||.+.||.
T Consensus 356 ~~~v~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~ 387 (420)
T 2pb2_A 356 LIGAELKPKYKGRARDFLYAGAE-AGVMVLNAG 387 (420)
T ss_dssp EEEEEECGGGTTCHHHHHHHHHH-TTEECEESS
T ss_pred EEEEEECCCchHHHHHHHHHHHH-CCCEEEeCC
Confidence 55666643211146788888876 599999873
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-29 Score=245.52 Aligned_cols=301 Identities=13% Similarity=0.040 Sum_probs=204.1
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
..+.++.|...+++++.+.+++.+.+ ....|.+..+..+|+++++++++ .+ ..++++|+++++..++.+
T Consensus 14 ~~~~~~~~~~~~g~~p~v~~ai~~~~--~~~~~~~~~~~~~l~~~la~~~~--------~~-~~i~~~~g~~a~~~a~~~ 82 (359)
T 3pj0_A 14 PYKLGGNGPRNVGVLTEALQNIDDNL--ESDIYGNGAVIEDFETKIAKILG--------KQ-SAVFFPSGTMAQQIALRI 82 (359)
T ss_dssp SEESSSSSCCBHHHHHHHTTTSCTTC--BCCBTTBSHHHHHHHHHHHHHHT--------CS-EEEEESCHHHHHHHHHHH
T ss_pred chhhcCCCccccCCCHHHHHHHHhhc--ccCcccCCHHHHHHHHHHHHHhC--------CC-cEEEeCCHHHHHHHHHHH
Confidence 44555555555555677776665532 23457666677899999999876 23 234447778999999999
Q ss_pred ccCCCCe--EEEcCCCchhHHH---HHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCc-ccCCCHHH
Q 013883 190 LINPGDE--VILFAPFYDSYEA---TLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPT-GKMFTREE 263 (434)
Q Consensus 190 l~~~gd~--Vlv~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPT-G~~~~~e~ 263 (434)
++.+||+ |+++.+.|..... .....|++++.++.+ ++.+|++.++++ .+++++|++++||||+ |.+++.++
T Consensus 83 ~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~ 159 (359)
T 3pj0_A 83 WADRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTA--NQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEE 159 (359)
T ss_dssp HHHHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCT--TSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHH
T ss_pred HHhcCCCcEEEEeccceeeehhcchHHHhcCceEEecCCc--CCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHH
Confidence 9988887 5555555544321 235679999888763 678999999998 7789999999999998 79999999
Q ss_pred HHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcc
Q 013883 264 LNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL 343 (434)
Q Consensus 264 l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~ 343 (434)
+++|+++|++||+++|+|++|..+...........+.. ...+++.|+||.++.++ . ||+++++++++.++..+...
T Consensus 160 l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~--~~d~~~~s~sK~~~~~~-g-g~~~~~~~l~~~~~~~~~~~ 235 (359)
T 3pj0_A 160 LEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICA--LFDSVYVSFYKGIGGIA-G-AILAGNDDFVQEAKIWKRRY 235 (359)
T ss_dssp HHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHT--TCSEEEEESSSTTCCSS-C-EEEEECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhc--cCCEEEEeccccCCCcc-e-EEEECCHHHHHHHHHHHHHh
Confidence 99999999999999999999875432111111111111 11245569999987553 2 88899999999887755433
Q ss_pred ccCC--chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEee-cCCeeEEEeeecCCCCCCCHHHHHHHH
Q 013883 344 TFAT--STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVF-PSSGTYFVVVDHTPFGHETDIAFCEYL 419 (434)
Q Consensus 344 ~~~~--~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L 419 (434)
..+. ....+.++..+|++ .. +..+++.++++.+.+.|+++ |+.+. .+.++.++|+++...+..+..++.+.|
T Consensus 236 ~~~~~~~~~~~~a~~~~l~~---~~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 311 (359)
T 3pj0_A 236 GGDLISLYPYILSADYYFEK---RI-GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSADEIGAILTKIQ 311 (359)
T ss_dssp TCCCSCCHHHHHHHHHHHHH---HG-GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHH---HH-HHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCccchhHHHHHHHH
Confidence 2222 23333333444543 22 23445678888999999987 88885 445555667766432111245666666
Q ss_pred HHhcCeEEECCCCC
Q 013883 420 IKEVGVVAIPTSVF 433 (434)
Q Consensus 420 l~~~GV~v~pG~~F 433 (434)
. ++||.+.||..|
T Consensus 312 ~-~~GV~v~~g~~~ 324 (359)
T 3pj0_A 312 D-ETGVGISGYLQE 324 (359)
T ss_dssp H-HHCEECCSCCEE
T ss_pred H-hcCcEecCCccc
Confidence 5 569999999765
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=238.36 Aligned_cols=288 Identities=12% Similarity=0.082 Sum_probs=206.7
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCC-----CCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc----C
Q 013883 122 DGPDFVKDAAIQAIRDGKNQYARG-----HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI----N 192 (434)
Q Consensus 122 ~~~~~v~~~~~~~~~~~~~~Y~~~-----~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~----~ 192 (434)
++++.+.+++.+.+.+. ..++.. .+..++.+.+.+.+.+.+|. +++ +|++++|+++++.+++.++. +
T Consensus 11 ~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~-~i~~~~g~~~a~~~~~~~~~~~~~~ 86 (382)
T 4hvk_A 11 PVDERILEAMLPYMTES-FGNPSSVHSYGFKAREAVQEAREKVAKLVNG--GGG-TVVFTSGATEANNLAIIGYAMRNAR 86 (382)
T ss_dssp CCCHHHHHHHHHHHHTS-CCCTTCSSHHHHHHHHHHHHHHHHHHHHTTC--TTE-EEEEESSHHHHHHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHhh-cCCCcccchHHHHHHHHHHHHHHHHHHHcCC--CcC-eEEEECCchHHHHHHHHHhhhhhcC
Confidence 45778888988888652 222211 12234444555555555553 466 89999999999999999988 9
Q ss_pred CCCeEEEcCCCchhHHHHHHH---cCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHH
Q 013883 193 PGDEVILFAPFYDSYEATLSM---AGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIAS 269 (434)
Q Consensus 193 ~gd~Vlv~~p~y~~~~~~~~~---~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~ 269 (434)
+||+|+++++.|+.+...+.. .|++++.++.++ ++.+|++.+++++++++++|++++|+||||.+.+ +++|.+
T Consensus 87 ~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~ 162 (382)
T 4hvk_A 87 KGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK-YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQP---VEEISE 162 (382)
T ss_dssp GCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCT-TSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCC---HHHHHH
T ss_pred CCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCC-CCCcCHHHHHHHhccCceEEEEECCCCCceeeCC---HHHHHH
Confidence 999999999999998776554 699999999884 6789999999999999999999999999999987 557889
Q ss_pred HHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHH-------hhc
Q 013883 270 LCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA-------HSF 342 (434)
Q Consensus 270 la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~-------~~~ 342 (434)
+|++||+ +|+|++|..... ...+.. .+..+++.|++|.+|.+| +|+++++++. .+... ...
T Consensus 163 l~~~~~~-li~D~a~~~~~~---~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~--~~~~~~~~~~~~~~~ 230 (382)
T 4hvk_A 163 VLAGKAA-LHIDATASVGQI---EVDVEK----IGADMLTISSNDIYGPKG--VGALWIRKEA--KLQPVILGGGQENGL 230 (382)
T ss_dssp HHSSSSE-EEEECTTTBTTB---CCCHHH----HTCSEEEEESGGGTSCTT--CEEEEEETTC--CCCCSSCSSCTGGGT
T ss_pred HHHHcCE-EEEEhHHhcCCC---CCCchh----cCCCEEEEeHHHhcCCCc--eEEEEEcCcc--CcCcccccCCCcCcc
Confidence 9999999 999999874221 111111 134588999999888666 7777776553 11111 111
Q ss_pred cccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCe---eEEEeeecCCCCCCCHHHHHHH
Q 013883 343 LTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSG---TYFVVVDHTPFGHETDIAFCEY 418 (434)
Q Consensus 343 ~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 418 (434)
...+.+...+.++..+++...+++++.+++++++++.+.+.|+++ |+.+..+.+ ..++++.+. + .+..++.+.
T Consensus 231 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~ 307 (382)
T 4hvk_A 231 RSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFS--Y-IEGESIVLS 307 (382)
T ss_dssp SCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEET--T-CCHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEEC--C-CCHHHHHHH
Confidence 234456666777767766445678889999999999999999987 788776553 223444442 2 257788887
Q ss_pred HHHhcCeEEECCCCC
Q 013883 419 LIKEVGVVAIPTSVF 433 (434)
Q Consensus 419 Ll~~~GV~v~pG~~F 433 (434)
|.+ +||.+.||..|
T Consensus 308 l~~-~gi~v~~g~~~ 321 (382)
T 4hvk_A 308 LDM-AGIQASTGSAC 321 (382)
T ss_dssp HHH-TTCBCBCC---
T ss_pred HHH-CCEEEeeCCcc
Confidence 755 59999999765
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=240.95 Aligned_cols=300 Identities=14% Similarity=0.112 Sum_probs=212.9
Q ss_pred CeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 110 GAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 110 ~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
..+||..+. ..+. .+|.+.+++.+++.+..+.|. .+..++++++++++.+..| ++ +|++++|+++++..+
T Consensus 37 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~~----~~-~v~~~~gg~ea~~~a 109 (395)
T 3nx3_A 37 KYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSN--LYYNENIAAAAKNLAKASA----LE-RVFFTNSGTESIEGA 109 (395)
T ss_dssp EEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCT--TSBCHHHHHHHHHHHHHHT----CS-EEEEESSHHHHHHHH
T ss_pred EEEECCCcHHhccCCCCCHHHHHHHHHHHHhcccccc--ccCCHHHHHHHHHHHHhcC----CC-eEEEeCCHHHHHHHH
Confidence 578998773 2233 478899999998876443332 2334666777777776665 45 899999999999999
Q ss_pred HHHcc-------CCCCeEEEcCCCchhHHHHHHHcC-------------CEEEEEEcCCCCCCCCHHHHHhhcccCCcEE
Q 013883 187 ILGLI-------NPGDEVILFAPFYDSYEATLSMAG-------------AKIKCITLRPPDFAIPIEELKSTISKNTRAI 246 (434)
Q Consensus 187 ~~~l~-------~~gd~Vlv~~p~y~~~~~~~~~~G-------------~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i 246 (434)
++.+. .++|+|++.+|+|+++.......+ .++..++.+ |++.+++++++++++|
T Consensus 110 l~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~l~~~l~~~~~~v 183 (395)
T 3nx3_A 110 MKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN------DISSVEKLVNEKTCAI 183 (395)
T ss_dssp HHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT------CHHHHHTTCCTTEEEE
T ss_pred HHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC------CHHHHHHhccCCeEEE
Confidence 88775 457999999999987654433332 345555543 7999999999888899
Q ss_pred EecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeee
Q 013883 247 LMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGW 325 (434)
Q Consensus 247 ~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~ 325 (434)
++++++|++|.. ++.+++++|.++|++||+++|+||+|.+|...+.......... ...+.||||.++ .|+|+||
T Consensus 184 ~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~----~~d~~t~sK~~~-~G~~~G~ 258 (395)
T 3nx3_A 184 ILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQI----LPDIMTSAKALG-CGLSVGA 258 (395)
T ss_dssp EEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC----CCSEEEECGGGT-TTSCCEE
T ss_pred EEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCC----CCCEEEeccccc-CCCceEE
Confidence 888888888776 6788899999999999999999999998865554332222211 122558999999 6999999
Q ss_pred EEeChhh-HHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCC-CEeecCCeeEEEe
Q 013883 326 AIAPPHL-TWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVG-FKVFPSSGTYFVV 401 (434)
Q Consensus 326 ~~~~~~~-~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~ 401 (434)
+++++++ ++.+.......+++.+++++.++.++|+.. ++++++.++..+..++.+.+.+.+.+ +...++.|. |++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~-~~~ 337 (395)
T 3nx3_A 259 FVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGF-MQG 337 (395)
T ss_dssp EEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETT-EEE
T ss_pred EEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeEEE-EEE
Confidence 9999998 777765544567888999999998888742 23444445544555555555554443 344444444 556
Q ss_pred eecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 402 VDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 402 ~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+.+... .+..+++++|+++ ||.+.||.
T Consensus 338 ~~~~~~--~~~~~~~~~l~~~-Gi~v~~~~ 364 (395)
T 3nx3_A 338 LSLDKS--VKVAKVIQKCQEN-ALLLISCG 364 (395)
T ss_dssp EEECTT--SCHHHHHHHHHHT-TEECEEET
T ss_pred EEeCCc--chHHHHHHHHHHC-CCEEecCC
Confidence 665431 2477888888765 99999873
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-28 Score=237.44 Aligned_cols=298 Identities=14% Similarity=0.144 Sum_probs=213.7
Q ss_pred eeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc
Q 013883 111 AINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL 190 (434)
Q Consensus 111 ~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l 190 (434)
..+|+-| | .+.++.+.+++.+.+. ..|.+ +..++.+++.+++.+.+|.+.+.+ .+++++|+++++.+++.++
T Consensus 20 ~~~~~pg-p-~~~~~~v~~a~~~~~~---~~~~~--~~~~~~~~~~~~la~~~g~~~~~~-~i~~~~ggt~al~~~~~~~ 91 (376)
T 3f0h_A 20 MLNFTVG-P-VMSSEEVRAIGAEQVP---YFRTT--EFSSTMLENEKFMLEYAKAPEGSK-AVFMTCSSTGSMEAVVMNC 91 (376)
T ss_dssp CEECSSS-S-CCCCHHHHHHHTSCCC---CCSSH--HHHHHHHHHHHHHHHHHTCCTTCE-EEEESSCHHHHHHHHHHHH
T ss_pred ceeecCC-C-CCCcHHHHHHhcCCCC---CCCCH--HHHHHHHHHHHHHHHHhCCCCCce-EEEEcCChhHHHHHHHHhc
Confidence 4566544 2 3456777766654331 12222 334667777777777777653333 5666999999999999999
Q ss_pred cCCCCeEEEcCCCchhHH--HHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 191 INPGDEVILFAPFYDSYE--ATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 191 ~~~gd~Vlv~~p~y~~~~--~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
+++||+|++++|.|+++. ..+...|++++.++.++ ++.+|++.+++++++++++|++++|+||||.+++ +++|+
T Consensus 92 ~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~ 167 (376)
T 3f0h_A 92 FTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLEH-GKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYD---TMMIG 167 (376)
T ss_dssp CCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEECCT-TCCCCHHHHHTTTTSCCCEEEEESEETTTTEECC---HHHHH
T ss_pred cCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCC-CCCCCHHHHHHhhccCceEEEEecccCCcceecC---HHHHH
Confidence 999999999999877754 34677899999999874 6889999999999889999999999999999998 77899
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhc-cccceeeeEEeChhhHHHHHHHhh------
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIAPPHLTWGVRQAHS------ 341 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~~~~~~~~l~~~~~------ 341 (434)
++|++||+++|+|++|..+... ..+.. .+..+++.|++|.++ .+| +|++++++++++.+.....
T Consensus 168 ~l~~~~~~~li~D~~~~~~~~~---~~~~~----~~~d~~~~s~~K~l~~~~G--~g~~~~~~~~~~~~~~~~~~~~~~~ 238 (376)
T 3f0h_A 168 EFCKKNNMFFVCDCVSAFLADP---FNMNE----CGADVMITGSQKVLACPPG--ISVIVLAPRGVERVEKSKVRTMYFD 238 (376)
T ss_dssp HHHHHTTCEEEEECTTTTTTSC---CCHHH----HTCSEEEEETTTTTCCCSS--CEEEEECHHHHHHHHTCCCCCSTTC
T ss_pred HHHHHcCCEEEEEcCccccCcc---ccccc----cCccEEEecCcccccCCCc--eEEEEECHHHHHHhhcCCCCceeec
Confidence 9999999999999999865321 11111 123588999999998 555 7889999998887764211
Q ss_pred -----------ccccCCchHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCC
Q 013883 342 -----------FLTFATSTPMQWAATAALRAPET--YYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFG 408 (434)
Q Consensus 342 -----------~~~~~~~~~~q~a~~~~L~~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 408 (434)
...++++...+.++..+++...+ .+++++++++++++.+.+.|+++|+.+.++.....++.-. +.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~~ 317 (376)
T 3f0h_A 239 LKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVH-PTT 317 (376)
T ss_dssp HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEE-ESS
T ss_pred HHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEe-CCC
Confidence 11234444444555555553222 4778889999999999999999888776544322222111 122
Q ss_pred CCCHHHHHHHHHHhcCeEEECCC
Q 013883 409 HETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 409 ~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
. +..++.++|.+++||.+.||.
T Consensus 318 ~-~~~~l~~~l~~~~gi~v~~g~ 339 (376)
T 3f0h_A 318 A-NAYDIFLKLKDEYGIWICPNG 339 (376)
T ss_dssp S-CHHHHHHHHHHHSSEECEECC
T ss_pred C-CHHHHHHHHHHhCCEEEecCc
Confidence 2 577899999877799999984
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=242.22 Aligned_cols=288 Identities=19% Similarity=0.201 Sum_probs=215.6
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.|||+.|.|.++ +.+.+++.+.+... .|.+..+..+++++++++++ .+ ++++++|+++++..++.+
T Consensus 31 ~~id~~~~~~~~~--~~v~~a~~~~~~~~--~y~~~~~~~~l~~~la~~~~--------~~-~~v~~~~Gt~a~~~~l~~ 97 (399)
T 2oga_A 31 PFLDLKAAYEELR--AETDAAIARVLDSG--RYLLGPELEGFEAEFAAYCE--------TD-HAVGVNSGMDALQLALRG 97 (399)
T ss_dssp CSCCHHHHHHHTH--HHHHHHHHHHHHHT--CCSSSHHHHHHHHHHHHHTT--------SS-EEEEESCHHHHHHHHHHH
T ss_pred cccccCcCCCCCC--HHHHHHHHHHHhcC--CCCCchhHHHHHHHHHHHHC--------CC-eEEEecCHHHHHHHHHHH
Confidence 5678888876554 77888888887653 57666678899999999876 22 466677779999999999
Q ss_pred c-cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 190 L-INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 190 l-~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
+ +++||+|+++.|+|+.+...+...|++++.++++++++.+|++.+++++++++++|+ |+||||.+.+ +++|.
T Consensus 98 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~---l~~i~ 171 (399)
T 2oga_A 98 LGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALL---PVHLYGHPAD---MDALR 171 (399)
T ss_dssp TTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHHH
T ss_pred hCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccC---HHHHH
Confidence 9 899999999999999999999999999999998865688999999999988888776 5789999875 67799
Q ss_pred HHHHHcCcEEEEcCcCCccc-cCCCCccccCCCCCCCceEEEccC--ChhhccccceeeeEEeC-hhhHHHHHHHhhcc-
Q 013883 269 SLCIENDVLVFSDEVYDKLA-FEMDHISIASLPGMYERTVTMNSL--GKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFL- 343 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~-~~~~~~~~~~~~~~~~~~i~i~S~--SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~- 343 (434)
++|+++|+++|+||+|..+. +++. .+..+ ..+++.|+ +|.+|.+| |+||++++ +++++.++......
T Consensus 172 ~l~~~~~~~li~Dea~~~g~~~~~~--~~~~~-----~di~~~S~~~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~ 243 (399)
T 2oga_A 172 ELADRHGLHIVEDAAQAHGARYRGR--RIGAG-----SSVAAFSFYPGKNLGCFG-DGGAVVTGDPELAERLRMLRNYGS 243 (399)
T ss_dssp HHHHHHTCEECEECTTCTTCEETTE--ETTCT-----TCEEEEECCTTSSSCCSS-CCEEEEESCHHHHHHHHHHHBTTC
T ss_pred HHHHHcCCEEEEECcccccCccCCe--ecccc-----cCEEEEeCCCCccCCcCC-ceEEEEeCCHHHHHHHHHHHhcCc
Confidence 99999999999999998753 3222 11111 13788888 79999769 99999986 88888887655421
Q ss_pred -----------ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEee-cCCeeEEEeeecCCCCCC
Q 013883 344 -----------TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVF-PSSGTYFVVVDHTPFGHE 410 (434)
Q Consensus 344 -----------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~ 410 (434)
++..+.+.+.++...|+. +++..++.+++++.+.+.|+++ |+.+. .++++.++|+.+.... .
T Consensus 244 ~~~~~~~~~g~~~~~~~~~~a~~~~~l~~----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-~ 318 (399)
T 2oga_A 244 RQKYSHETKGTNSRLDEMQAAVLRIRLAH----LDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRT-E 318 (399)
T ss_dssp SSTTCCCSCCCBCCCCHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEEC-S
T ss_pred cccccccccccCCCcCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEEC-C
Confidence 124456666666667764 3344555666778888889886 77654 2444444442221111 2
Q ss_pred CHHHHHHHHHHhcCeEEECC
Q 013883 411 TDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 411 ~~~~~~~~Ll~~~GV~v~pG 430 (434)
+..++.+.|.+ +||.+.++
T Consensus 319 ~~~~l~~~L~~-~gI~v~~~ 337 (399)
T 2oga_A 319 RRDELRSHLDA-RGIDTLTH 337 (399)
T ss_dssp SHHHHHHHHHH-TTBCCBCS
T ss_pred CHHHHHHHHHH-CCCceecC
Confidence 57788888865 59999875
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-29 Score=245.64 Aligned_cols=272 Identities=14% Similarity=0.106 Sum_probs=189.7
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCC--eEEEcCCCchhHHH---HHHHc
Q 013883 140 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGD--EVILFAPFYDSYEA---TLSMA 214 (434)
Q Consensus 140 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd--~Vlv~~p~y~~~~~---~~~~~ 214 (434)
..|++..+..+|+++++++++ . +..+++ +|+++++..++.+++.+|| .|+++.+.|..+.. .....
T Consensus 41 ~~y~~~~~~~~l~~~la~~~~------~--~~~i~~-~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~ 111 (357)
T 3lws_A 41 DQYGTGAIIEPFEQKFADVLG------M--DDAVFF-PSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELH 111 (357)
T ss_dssp EETTEETTHHHHHHHHHHHHT------C--SEEEEE-SCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHS
T ss_pred ccccCChHHHHHHHHHHHHhC------C--CcEEEe-cCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccchhhhcc
Confidence 457776788999999999886 2 324444 6678899999999999988 67777666655433 45567
Q ss_pred CCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCc-ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCC
Q 013883 215 GAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPT-GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH 293 (434)
Q Consensus 215 G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPT-G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~ 293 (434)
|++++.++. +++.+|+++++++. ++++|++++||||| |.+++.+++++|+++|++||+++|+||+|.........
T Consensus 112 g~~~~~v~~--~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~ 187 (357)
T 3lws_A 112 PIETILVGA--ADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYE 187 (357)
T ss_dssp SCEEEECSC--TTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHT
T ss_pred CcEEEEecC--CCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcC
Confidence 999888774 36789999999884 38999999999998 99999999999999999999999999998622111001
Q ss_pred ccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCC--chHHHHHHHHHHhCChHHHHHHHH
Q 013883 294 ISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT--STPMQWAATAALRAPETYYEELKR 371 (434)
Q Consensus 294 ~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~--~~~~q~a~~~~L~~~~~~~~~~~~ 371 (434)
.....+....+ +++.|+||.++.++ .||+++++++++.++..+.....+. ....+.++..+|++ +.+. .+
T Consensus 188 ~~~~~~~~~~d--~~~~s~sK~~~~~~--gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~-~~ 259 (357)
T 3lws_A 188 KTAAEIAGLFD--SIYISFYKGLGGIA--GAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYEL---RKDR-MG 259 (357)
T ss_dssp CCHHHHHTTSS--EEEEESSSTTCCSS--CEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH---HTTC-HH
T ss_pred CChHHHHhcCC--EEEEeccccCCCCc--eEEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHH---HHHH-HH
Confidence 11111211223 34789999993233 2999999999998876654333222 23344444455553 3333 33
Q ss_pred HHHHHHHHHHHHhhhC-CCEee-cCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 372 DYSAKKAILVEGLNAV-GFKVF-PSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 372 ~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
++.++++.+.+.|+++ |+.+. .+.+++|+|+++...+..+..++.+.|. ++||.+.||..|
T Consensus 260 ~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~g~~~ 322 (357)
T 3lws_A 260 QYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQE-ETGLGFVGYLVD 322 (357)
T ss_dssp HHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHH-HHCEESCSCCEE
T ss_pred HHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChHHHHHHHHHHHH-hcCeEEeccccc
Confidence 4677888999999987 88884 4556667888874321112456766664 569999998543
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=248.60 Aligned_cols=310 Identities=15% Similarity=0.089 Sum_probs=209.9
Q ss_pred CeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 110 GAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 110 ~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
..+||+.|.+ .+. .++.+.+++.+++.+. ..|....|..++++++++++.+.++...+ + ++++++|+++++..+
T Consensus 44 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~-~v~~~~ggsea~~~a 120 (439)
T 3dxv_A 44 ELIDLSGAWGAASLGYGHPAIVAAVSAAAANP-AGATILSASNAPAVTLAERLLASFPGEGT-H-KIWFGHSGSDANEAA 120 (439)
T ss_dssp EEEESSTTTTTCTTCBSCHHHHHHHHHHHHSC-SCSCSSSSEEHHHHHHHHHHHHTTTCTTT-E-EEEEESSHHHHHHHH
T ss_pred EEEECCCchhhccCCCCCHHHHHHHHHHHHhc-cCccccccCCHHHHHHHHHHHHhCCCCCC-C-EEEEeCCHHHHHHHH
Confidence 5799998865 233 6889999999988764 44665667778899999999887754332 5 899999999999999
Q ss_pred HHHc--cCCCCeEEEcCCCchhHHHHHHHcCCE-E--------------EEEEcCCCCCCC----CHHHHHhhc----cc
Q 013883 187 ILGL--INPGDEVILFAPFYDSYEATLSMAGAK-I--------------KCITLRPPDFAI----PIEELKSTI----SK 241 (434)
Q Consensus 187 ~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~G~~-~--------------~~v~~~~~~~~~----d~~~l~~~i----~~ 241 (434)
++.+ ..+++.|++.+|.|+++......++.. . ..+|++...... |++.|++++ .+
T Consensus 121 l~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 200 (439)
T 3dxv_A 121 YRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAG 200 (439)
T ss_dssp HHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCC
Confidence 9875 346678999999997765544443322 1 122222111111 689999999 44
Q ss_pred CCcEEEecCCCCCcccCCC-HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccc
Q 013883 242 NTRAILMNTPHNPTGKMFT-REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTG 320 (434)
Q Consensus 242 ~~~~i~~~~p~NPTG~~~~-~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G 320 (434)
++++|+++.++|++|.+.+ .+.+++|+++|++||+++|+||+|.+|.+.+.......+.. ..+ +.||||.++ +|
T Consensus 201 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~-~~d---i~s~sK~~~-~G 275 (439)
T 3dxv_A 201 SIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGF-VPD---ILVLGKGLG-GG 275 (439)
T ss_dssp CEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTC-CCS---EEEECGGGG-TT
T ss_pred CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCC-CCC---EEEEcchhc-CC
Confidence 6778888888888888664 45599999999999999999999998765554333222221 122 239999999 79
Q ss_pred ceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhh----hCC-CEeecCC
Q 013883 321 WKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLN----AVG-FKVFPSS 395 (434)
Q Consensus 321 ~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~----~~g-~~~~~~~ 395 (434)
+|+||+++++++++.+.......++ .+++++.++.++|+..++ +++.++++++++.+++.|+ +.+ +...++.
T Consensus 276 ~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 352 (439)
T 3dxv_A 276 LPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDR--DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGR 352 (439)
T ss_dssp SCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred cceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE
Confidence 9999999999988777655445567 888888888888874221 2233444444444444444 343 3444555
Q ss_pred eeEEEeeecCCC------CCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 396 GTYFVVVDHTPF------GHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 396 ~~~~~~~~~~~~------~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
|.| +++.+... ...+..+++++|+++ ||.+.||..
T Consensus 353 g~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~ 393 (439)
T 3dxv_A 353 GLA-CGMELVCDRQSREPARAETAKLIYRAYQL-GLVVYYVGM 393 (439)
T ss_dssp TTE-EEEEEEEETTTTEECHHHHHHHHHHHHHH-TEECEEEST
T ss_pred EEE-EEEEEecCccccCCCHHHHHHHHHHHHHC-CcEEeecCC
Confidence 554 44544210 111245788888766 999999753
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-28 Score=243.46 Aligned_cols=313 Identities=13% Similarity=0.025 Sum_probs=220.9
Q ss_pred CCeeEeCCC--CCCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQG--FPNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g--~p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...|||..| ...+. .+|.+.+++.+++.+..+.|....+..++++++++.+.+..+ .+.+ +|++++|+++|+..
T Consensus 51 ~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~-~v~~~~gGseA~~~ 127 (460)
T 3gju_A 51 RKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAP--KGMS-RVYFGLSGSDANET 127 (460)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSC--TTEE-EEEEESSHHHHHHH
T ss_pred CEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCC--CCcC-EEEEeCchHHHHHH
Confidence 357898876 22232 468899999998877555566555666788888888887654 3455 89999999999999
Q ss_pred HHHHccC--------CCCeEEEcCCCchhHHHHHHHcCC-------------EEEEEEcCC----CCCCCC--------H
Q 013883 186 TILGLIN--------PGDEVILFAPFYDSYEATLSMAGA-------------KIKCITLRP----PDFAIP--------I 232 (434)
Q Consensus 186 ~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~----~~~~~d--------~ 232 (434)
+++.+.. ++++|++.+|+|+++......++. .+..++... .+.+.+ +
T Consensus 128 al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~ 207 (460)
T 3gju_A 128 NIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCA 207 (460)
T ss_dssp HHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHH
Confidence 9988874 468999999999987665544322 344454321 123344 6
Q ss_pred HHHHhhcc----cCCcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceE
Q 013883 233 EELKSTIS----KNTRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTV 307 (434)
Q Consensus 233 ~~l~~~i~----~~~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i 307 (434)
+.|++++. +++++|+++.++|++|. +++.+.+++|.++|++||+++|+||+|.+|.+.+.......+...++
T Consensus 208 ~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pd--- 284 (460)
T 3gju_A 208 DKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPD--- 284 (460)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCS---
T ss_pred HHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCC---
Confidence 88888886 35566777666778887 77888899999999999999999999999866654332222221222
Q ss_pred EEccCChhhcccc-ceeeeEEeChhhHHHHHHH-------hhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHH
Q 013883 308 TMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQA-------HSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKK 377 (434)
Q Consensus 308 ~i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~ 377 (434)
+.+|||.++ .| +|+||+++++++++.+... ....+++.+++++.++.++|+.. +++++++++..+..+
T Consensus 285 -i~t~sK~l~-gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~ 362 (460)
T 3gju_A 285 -LITIAKGLT-SAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFR 362 (460)
T ss_dssp -EEEECGGGT-TTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred -eeeeehhhc-CCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 447899998 56 8999999999999888643 33457888999999999999742 345666677777777
Q ss_pred HHHHHHhhhCC-CEeecCCeeEEEeeecCCCCC---------CCHHHHHHHHHHhcCeEEECCC
Q 013883 378 AILVEGLNAVG-FKVFPSSGTYFVVVDHTPFGH---------ETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 378 ~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+.+.+.+++.+ +..+++.|.|+ ++.+..... ....++++.|+++ ||.+.|+.
T Consensus 363 ~~l~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~ 424 (460)
T 3gju_A 363 AELAKAVGGHKNVGEVRGDGMLA-AVEFVADKDDRVFFDASQKIGPQVATALAAS-GVIGRAMP 424 (460)
T ss_dssp HHHHHHHTTSTTEEEEEEETTEE-EEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEECS
T ss_pred HHHHHHHhcCCCeEEEeeeeEEE-EEEEccCccccccccchHHHHHHHHHHHHHC-CeEEecCC
Confidence 77777777664 44555556644 444432110 0145677777765 99999975
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-27 Score=233.76 Aligned_cols=288 Identities=16% Similarity=0.153 Sum_probs=214.2
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.|+|+. |++ ++.+.+++.+.+.+.. |.+..+..+|+++++++++ .+ ++++++|+++++.+++.+
T Consensus 9 ~~i~~~~--p~~--~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~~--------~~-~~~~~~~gt~al~~~~~~ 73 (393)
T 1mdo_A 9 DFLPFSR--PAM--GAEELAAVKTVLDSGW--ITTGPKNQELEAAFCRLTG--------NQ-YAVAVSSATAGMHIALMA 73 (393)
T ss_dssp CCBCSCC--CCC--CHHHHHHHHHHHHHTC--CSSSHHHHHHHHHHHHHHC--------CS-EEEEESCHHHHHHHHHHH
T ss_pred cccccCC--CCC--CHHHHHHHHHHHhcCC--cCCChHHHHHHHHHHHHhC--------CC-cEEEecChHHHHHHHHHH
Confidence 4678875 654 3667788888887643 4455678899999999986 24 799999999999999999
Q ss_pred c-cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 190 L-INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 190 l-~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
+ +++||+|+++.|+|+.+...+...|++++.++++++++.+|++.+++++++++++|+++ ||||...+ +++|.
T Consensus 74 ~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~---~~~G~~~~---~~~i~ 147 (393)
T 1mdo_A 74 LGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPV---HYAGAPAD---LDAIY 147 (393)
T ss_dssp TTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCC---HHHHH
T ss_pred cCCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCCCceEEEEe---CCCCCcCC---HHHHH
Confidence 9 89999999999999999999999999999999986567899999999998888888775 48999874 77799
Q ss_pred HHHHHcCcEEEEcCcCCcc-ccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC-hhhHHHHHHHhhccc--
Q 013883 269 SLCIENDVLVFSDEVYDKL-AFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLT-- 344 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~-~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~~-- 344 (434)
++|+++|+++|+||+|..+ .+.+. . +. . .++++.||+|..+++|.|+||++++ +++++.++.......
T Consensus 148 ~l~~~~~~~li~D~a~~~g~~~~~~--~---~~-~--~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~ 219 (393)
T 1mdo_A 148 ALGERYGIPVIEDAAHATGTSYKGR--H---IG-A--RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGV 219 (393)
T ss_dssp HHHHHHTCCBCEECTTCTTCEETTE--E---TT-S--SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEEC
T ss_pred HHHHHcCCeEEEECccccCCeECCe--e---cC-C--CCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcc
Confidence 9999999999999999963 34322 1 11 1 5688999994444455699999997 788888876543211
Q ss_pred ----------------------cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeec-C-----Ce
Q 013883 345 ----------------------FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFP-S-----SG 396 (434)
Q Consensus 345 ----------------------~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~-----~~ 396 (434)
+..+.+...++...++. +++..++.+++++.+.+.|++.++++.. + .+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 295 (393)
T 1mdo_A 220 DAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQK----LDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHA 295 (393)
T ss_dssp C-----------CCEESSCCCBCCCCHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECC
T ss_pred cchhhhcccccccccccccCccCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCce
Confidence 11233434343444443 4555666667888899999888876542 2 34
Q ss_pred eEEEeeecCCC--CCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 397 TYFVVVDHTPF--GHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 397 ~~~~~~~~~~~--~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
++++|+.+... +. +..++.++|.+ +||.+.+|..
T Consensus 296 ~~~~~v~~~~~~~~~-~~~~l~~~l~~-~gi~v~~~~~ 331 (393)
T 1mdo_A 296 WHLFIIRVDEARCGI-TRDALMASLKT-KGIGTGLHFR 331 (393)
T ss_dssp CSCEEEECCHHHHSS-CHHHHHHHHHH-TTBCCBCCCC
T ss_pred eEEEEEEeccccccc-CHHHHHHHHHh-CCCCcccccC
Confidence 55677776410 22 46788888865 5999999863
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=231.40 Aligned_cols=296 Identities=12% Similarity=0.063 Sum_probs=217.6
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC-CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYAR-GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
+.++|.-| | .+.++.+.+++.+++.+....|.. ..+..++.+.+.+.+.+.+|.. +++ +|++++|+++++.+++.
T Consensus 4 ~~~~~~p~-p-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~-~v~~~~g~t~al~~~~~ 79 (362)
T 3ffr_A 4 NKIYFTPG-P-SELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELP-SNY-EVLFLASATEIWERIIQ 79 (362)
T ss_dssp CCEEECSS-S-CCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCC-TTE-EEEEESCHHHHHHHHHH
T ss_pred cceeccCC-C-cCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCC-CCc-EEEEeCCchHHHHHHHH
Confidence 34566544 2 334667777787777765422222 2233466677777777777753 445 89999999999999999
Q ss_pred HccCCCCeEEEcCCCchh-HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 189 GLINPGDEVILFAPFYDS-YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~-~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
++.++ +.+++..+.|.. +...+...|++++.++.++ ++.+|++.++ +++++++|++++|+||||.+++ +++|
T Consensus 80 ~l~~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~---l~~i 152 (362)
T 3ffr_A 80 NCVEK-KSFHCVNGSFSKRFYEFAGELGREAYKEEAAF-GKGFYPADIT--VPADAEIICLTHNETSSGVSMP---VEDI 152 (362)
T ss_dssp HHCSS-EEEEEECSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCGGGCC--CCTTCCEEEEESEETTTTEECC---HHHH
T ss_pred hccCC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEecCC-CCCCCHHHHh--ccCCccEEEEEcCCCCcceeCC---HHHH
Confidence 99988 555566666663 3456778899999999864 6789999998 7789999999999999999997 5668
Q ss_pred HHHHHHc-CcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhc-cccceeeeEEeChhhHHHHHHHhh----
Q 013883 268 ASLCIEN-DVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIAPPHLTWGVRQAHS---- 341 (434)
Q Consensus 268 ~~la~~~-~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~~~~~~~~l~~~~~---- 341 (434)
.++|++| |+++|+|++|..+... ..+ .+..+++.|++|.++ ++| +|+++++++++++++....
T Consensus 153 ~~la~~~p~~~li~D~a~~~~~~~---~~~------~~~d~~~~s~~K~~~~~~G--~g~~~~~~~~~~~~~~~~~gg~~ 221 (362)
T 3ffr_A 153 NTFRDKNKDALIFVDAVSSLPYPK---FDW------TKIDSVFFSVQKCFGLPAG--LGVWILNDRVIEKSKALLAKRKS 221 (362)
T ss_dssp TTSGGGSTTSEEEEECTTTTTSSC---CCT------TSCSEEEEETTSTTCCCSC--CEEEEEEHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCCEEEEecccccCCcc---cCh------hHCcEEEEecccccCCCCc--eEEEEECHHHHHHhhhccccCCC
Confidence 8899999 9999999999764321 111 114488899999998 677 6889999998888776543
Q ss_pred -----------------ccccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecC----CeeE
Q 013883 342 -----------------FLTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAV-GFKVFPS----SGTY 398 (434)
Q Consensus 342 -----------------~~~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~~~ 398 (434)
....+.+...+.++..+++.. ++.+++.+++++++++.+.+.|+++ |+.+.++ ..++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~ 301 (362)
T 3ffr_A 222 IGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMT 301 (362)
T ss_dssp CCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSS
T ss_pred CcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCc
Confidence 114556666677776777632 2226788889999999999999998 8887762 2345
Q ss_pred EEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 399 FVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
++|+.+.. +..++.++|.++ ||.+.||..
T Consensus 302 ~~~~~~~~----~~~~~~~~l~~~-gi~~~~g~~ 330 (362)
T 3ffr_A 302 TIVANTTM----LPGEINKILEPF-DMAVGAGYG 330 (362)
T ss_dssp EEEEEESS----CHHHHHHHHGGG-TEEEEECSG
T ss_pred eEEEecCC----CHHHHHHHHHHC-CeEEecCcc
Confidence 66666643 578899998776 999999854
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-26 Score=232.49 Aligned_cols=292 Identities=18% Similarity=0.220 Sum_probs=210.7
Q ss_pred CCCCCCCCC-cHHHHHHHHHHHHcCCCC-CCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc-c
Q 013883 115 GQGFPNFDG-PDFVKDAAIQAIRDGKNQ-YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL-I 191 (434)
Q Consensus 115 ~~g~p~~~~-~~~v~~~~~~~~~~~~~~-Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l-~ 191 (434)
+.|.|++++ ++.+.+++.+++.+.... |++..|..++++++.+.+.+.+|.+ ++++++++++++.+++.++ +
T Consensus 5 ~~g~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~-----~~i~~~~gt~al~~~~~~~~~ 79 (418)
T 2c81_A 5 FDHWPEWPQHSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVP-----YCVPTTSGSTALMLALEALGI 79 (418)
T ss_dssp ---CCCSSCCCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCS-----EEEEESCHHHHHHHHHHHTTC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCC-----cEEEeCCHHHHHHHHHHHcCC
Confidence 346787776 788999999998776544 8887886666666666666555542 3555666689999999999 8
Q ss_pred CCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHH
Q 013883 192 NPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLC 271 (434)
Q Consensus 192 ~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la 271 (434)
++||+|+++.|+|..+...+...|++++.++.+++++.+|++.+++++++++++|+++ ||||... ++++|.++|
T Consensus 80 ~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~---~~~~i~~~~ 153 (418)
T 2c81_A 80 GEGDEVIVPSLTWIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAITDKTKAIIPV---HLFGSMA---NMDEINEIA 153 (418)
T ss_dssp CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECCB---CCTTCCC---CHHHHHHHH
T ss_pred CCcCEEEECCCccHhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEEe---CCcCCcc---cHHHHHHHH
Confidence 9999999999999999999999999999999986578999999999998888888764 6899875 577899999
Q ss_pred HHcCcEEEEcCcCCccc-cCCCCccccCCCCCCCceEEEccC--ChhhccccceeeeEEeC-hhhHHHHHHHhhccc---
Q 013883 272 IENDVLVFSDEVYDKLA-FEMDHISIASLPGMYERTVTMNSL--GKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLT--- 344 (434)
Q Consensus 272 ~~~~~~iI~Deay~~~~-~~~~~~~~~~~~~~~~~~i~i~S~--SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~~--- 344 (434)
++||+++|+||+|..+. +++. .+..+ . .+.+.|| +|.+|. | |+||++++ +++++.++.......
T Consensus 154 ~~~~~~li~D~a~~~~~~~~~~--~~~~~---~--~~~~~s~s~~K~~~~-g-~~g~~~~~~~~l~~~~~~~~~~~~~~~ 224 (418)
T 2c81_A 154 QEHNLFVIEDCAQSHGSVWNNQ--RAGTI---G--DIGAFSCQQGKVLTA-G-EGGIIVTKNPRLFELIQQLRADSRVYC 224 (418)
T ss_dssp HHTTCEEEEECTTCTTCEETTE--ETTSS---S--SEEEEECCTTSSSCS-S-SCEEEEESCHHHHHHHHHHHBTTEEEC
T ss_pred HHCCCEEEEECcccccCccCCE--ecccc---c--ceEEEeccCCcccCC-C-CeEEEEECCHHHHHHHHHHHHhCcccc
Confidence 99999999999999876 5432 12222 2 2667777 999995 8 99999995 788888776553321
Q ss_pred ---------cC--C---c--------hHHHHHHH-HHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEee-cCCe-eE
Q 013883 345 ---------FA--T---S--------TPMQWAAT-AALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVF-PSSG-TY 398 (434)
Q Consensus 345 ---------~~--~---~--------~~~q~a~~-~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~-~~ 398 (434)
+. . . ...+.++. ..++ ++++..++.+++++.+.+.|+++ |+.+. ++++ +.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~----~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~ 300 (418)
T 2c81_A 225 DDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQ----ELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSR 300 (418)
T ss_dssp SCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEE
T ss_pred ccccccccchhhccccccccCcCCCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcc
Confidence 11 0 0 11122211 1222 35566677777888899999887 78876 4555 33
Q ss_pred EEe----eecCC---CCCCCHHHHHHHHHHhcCeE---EECCC
Q 013883 399 FVV----VDHTP---FGHETDIAFCEYLIKEVGVV---AIPTS 431 (434)
Q Consensus 399 ~~~----~~~~~---~~~~~~~~~~~~Ll~~~GV~---v~pG~ 431 (434)
..| +.+.. .+. +..++.++|.+++||. +.+|.
T Consensus 301 ~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gI~~~~v~~~~ 342 (418)
T 2c81_A 301 QTYYGYVFRFDPVKFGGL-NADQFCEILREKLNMGTFYLHPPY 342 (418)
T ss_dssp CCCSEEEEEECGGGTTTC-CHHHHHHHHHHHHTCCTTTEECCC
T ss_pred cccEEEEEEEcccccccc-CHHHHHHHHHHcCCCCcccccccc
Confidence 222 44432 122 5778988887666999 98874
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=235.47 Aligned_cols=301 Identities=15% Similarity=0.089 Sum_probs=203.9
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCC-CCCC------CCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGK-NQYA------RGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~-~~Y~------~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+.|+|..+... .++.+.+++.+.+.+.. ..|+ ......++++.+.+.+.+.+|. +++ +|++++| +++
T Consensus 26 ~~i~l~~~~~~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~-~i~~~sG-t~a 99 (417)
T 3n0l_A 26 EGLEMIASENF--TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNC--KFA-NVQPNSG-SQA 99 (417)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEE-ECCCSSH-HHH
T ss_pred cCeeeecccCC--CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCC--CCc-ceEeccH-HHH
Confidence 56777554322 37788888877764321 2222 2223345666555566655554 444 6888888 799
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHHH---HHHH--cCCEEEEEEcCCCCCCCCHHHHHhhcc-cCCcEEEecCCCCCcc
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYEA---TLSM--AGAKIKCITLRPPDFAIPIEELKSTIS-KNTRAILMNTPHNPTG 256 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~~---~~~~--~G~~~~~v~~~~~~~~~d~~~l~~~i~-~~~~~i~~~~p~NPTG 256 (434)
+..++.+++++||+|++++|+|.++.. .+.. .+..++.++.+ +++.+|++.++++++ .++++|++++|+| |
T Consensus 100 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G 176 (417)
T 3n0l_A 100 NQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE-LDGRIDYEKVREIAKKEKPKLIVCGASAY--A 176 (417)
T ss_dssp HHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCC-TTSSCCHHHHHHHHHHHCCSEEEECCSSC--C
T ss_pred HHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCC-CCCCcCHHHHHHHHHhcCCeEEEECCccc--C
Confidence 999999999999999999999988654 3333 34455666666 577899999999998 5899999888886 7
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcCcCC-ccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC-hhhHH
Q 013883 257 KMFTREELNVIASLCIENDVLVFSDEVYD-KLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTW 334 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~~~~iI~Deay~-~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~ 334 (434)
...+ +++|.++|++||+++|+||+|. ++.+.+..... + ....+++.|+||.+ +|+|+||++++ +++.+
T Consensus 177 ~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--~---~~~di~~~s~sK~l--~g~~~G~~~~~~~~~~~ 246 (417)
T 3n0l_A 177 RVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSP--F---PYAHVVSSTTHKTL--RGPRGGIIMTNDEELAK 246 (417)
T ss_dssp SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCC--T---TTCSEEEEESSTTT--CSCSCEEEEESCHHHHH
T ss_pred ccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccCCCc--c---ccceEEEeeCcccc--CCCCeeEEEECCHHHHH
Confidence 7776 7789999999999999999964 44444332211 1 12458899999988 68899999998 78888
Q ss_pred HHHHHhhccccC-CchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeec-CCeeEEEeeecCCCCCCC
Q 013883 335 GVRQAHSFLTFA-TSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFP-SSGTYFVVVDHTPFGHET 411 (434)
Q Consensus 335 ~l~~~~~~~~~~-~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 411 (434)
.++........+ ++...+.++..++.. .++++++.+++++++++.+.+.|++.|+.+.. ...+.++|+++.+.+. +
T Consensus 247 ~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~ 325 (417)
T 3n0l_A 247 KINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDREF-S 325 (417)
T ss_dssp HHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTSSS-C
T ss_pred HHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccCCCCceEEEEEcccCCC-C
Confidence 887765443333 334444454555554 34566888889999999999999998988765 2345567777654443 3
Q ss_pred HHHHHHHHHHhcCeEEECCC
Q 013883 412 DIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 412 ~~~~~~~Ll~~~GV~v~pG~ 431 (434)
..++.+.| +++||.+.++.
T Consensus 326 ~~~~~~~l-~~~gi~v~~~~ 344 (417)
T 3n0l_A 326 GKDADLAL-GNAGITANKNT 344 (417)
T ss_dssp HHHHHHHH-HHTTEECEECC
T ss_pred HHHHHHHH-HHcCeEEeccc
Confidence 55555544 66799998654
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=244.70 Aligned_cols=315 Identities=14% Similarity=0.086 Sum_probs=215.8
Q ss_pred CCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...|||..|. ..+. .+|.+.+++.+++.+. ..|....+..+++.++++.+.+..+.. ..+ +|++++|+++|+..
T Consensus 64 ~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~-~v~~~~sGseA~~~ 140 (453)
T 4ffc_A 64 NSFIDLGAGIAVTTVGASHPAVAAAIADQATHF-THTCFMVTPYEQYVQVAELLNALTPGD-HDK-RTALFNSGAEAVEN 140 (453)
T ss_dssp CEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHC-SCCTTTTSCCHHHHHHHHHHHHHSSCS-SCE-EEEEESSHHHHHHH
T ss_pred CEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhc-cccccCcCCCHHHHHHHHHHHHhCCCC-CCc-EEEEeCcHHHHHHH
Confidence 3578988762 2333 3788999999988764 346555566788888888888776532 235 89999999999999
Q ss_pred HHHHcc--CCCCeEEEcCCCchhHHHHHHHcCC--------------EEEEEEcCC---CCCCCC--------HHHHHhh
Q 013883 186 TILGLI--NPGDEVILFAPFYDSYEATLSMAGA--------------KIKCITLRP---PDFAIP--------IEELKST 238 (434)
Q Consensus 186 ~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~--------------~~~~v~~~~---~~~~~d--------~~~l~~~ 238 (434)
+++.+. ..++.|++.+++|+++......++. .+..+|+.. +.++.+ ++.++++
T Consensus 141 alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 220 (453)
T 4ffc_A 141 AIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQ 220 (453)
T ss_dssp HHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHh
Confidence 997765 3458999999999987666554432 345555541 122333 4667777
Q ss_pred cccCCcEEEecCCCCCcc--cCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhh
Q 013883 239 ISKNTRAILMNTPHNPTG--KMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTF 316 (434)
Q Consensus 239 i~~~~~~i~~~~p~NPTG--~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 316 (434)
+.++..+++++.|+|++| ..++.+.+++|.++|++||+++|+||+|.+|.+.+.......+.. ...+.+|||.+
T Consensus 221 i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~----~pdi~t~sK~~ 296 (453)
T 4ffc_A 221 IGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGI----VPDIVTMAKGI 296 (453)
T ss_dssp TCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC----CCSEEEECGGG
T ss_pred cCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCC----CcchHhhhhhh
Confidence 766667777788888876 455788899999999999999999999999866554332222211 12255799999
Q ss_pred ccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCC-CEeec
Q 013883 317 SLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVG-FKVFP 393 (434)
Q Consensus 317 g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~ 393 (434)
+ .|+|+||+++++++++.+.......+++.+++++.++.++|+.. ++++++.++..+..++.+.+.+.+.+ +...+
T Consensus 297 ~-~G~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 375 (453)
T 4ffc_A 297 A-GGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVR 375 (453)
T ss_dssp G-TTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEE
T ss_pred c-CCcCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 9 59999999999999887776666678899999999999988742 23344444444444555555444543 34444
Q ss_pred CCeeEEEeeecCCC-----CCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 394 SSGTYFVVVDHTPF-----GHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 394 ~~~~~~~~~~~~~~-----~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+.|. |+++.+... ......++++.|+++ ||.+.|+..|
T Consensus 376 ~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~ 418 (453)
T 4ffc_A 376 GRGA-MLAIEIVKPGTLEPDAALTKSIAAEALSQ-GVLILTCGTF 418 (453)
T ss_dssp EETT-EEEEEEBCTTSCCBCHHHHHHHHHHHHHT-TEECCEECTT
T ss_pred eece-EEEEEEecCcccCCCHHHHHHHHHHHHhC-CCEEecCCCC
Confidence 4455 455554220 011245677777665 9999997643
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-28 Score=242.05 Aligned_cols=297 Identities=16% Similarity=0.146 Sum_probs=211.7
Q ss_pred CCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCC---CCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 109 HGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKN---QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 109 ~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~---~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
...|||..|.+ .++ .+|.+.+++.+++.+..+ .| +.....+|++.+++++ | .+ +|++++|+++|
T Consensus 76 ~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----g----~~-~v~~~~sGseA 145 (439)
T 2oat_A 76 RKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAF-YNNVLGEYEEYITKLF----N----YH-KVLPMNTGVEA 145 (439)
T ss_dssp CEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCTTS-EESSHHHHHHHHHHHH----T----CS-EEEEESSHHHH
T ss_pred CEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccCcc-CCHHHHHHHHHHHHhc----C----CC-EEEEeCCHHHH
Confidence 35789988744 455 789999999998876322 12 1123355666666654 3 45 89999999999
Q ss_pred HHHHHHHcc---------CCC-CeEEEcCCCchhHHH-HHHHcC------------CEEEEEEcCCCCCCCCHHHHHhhc
Q 013883 183 IAATILGLI---------NPG-DEVILFAPFYDSYEA-TLSMAG------------AKIKCITLRPPDFAIPIEELKSTI 239 (434)
Q Consensus 183 i~~~~~~l~---------~~g-d~Vlv~~p~y~~~~~-~~~~~G------------~~~~~v~~~~~~~~~d~~~l~~~i 239 (434)
+..+++.+. .+| |+|++.+|+|+++.. .+...| .+++.+|+. |++.+++++
T Consensus 146 ~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~------d~~~le~~l 219 (439)
T 2oat_A 146 GETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN------DLPALERAL 219 (439)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSS------CHHHHHHHT
T ss_pred HHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCC------CHHHHHHHh
Confidence 999998764 367 899999999987543 444444 456666653 799999999
Q ss_pred c-cCCcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhc
Q 013883 240 S-KNTRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFS 317 (434)
Q Consensus 240 ~-~~~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 317 (434)
+ +++++|+++..+|++|. .++.+++++|.++|++||+++|+||+|.+|.+.+....+..+...+| +.||||.++
T Consensus 220 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~D----i~t~sK~l~ 295 (439)
T 2oat_A 220 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPD----IVLLGKALS 295 (439)
T ss_dssp TSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS----EEEECGGGG
T ss_pred CCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCc----EEEeccccc
Confidence 4 56666666555678896 56889999999999999999999999988766554332222211122 239999999
Q ss_pred ccc-ceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEe---ec
Q 013883 318 LTG-WKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKV---FP 393 (434)
Q Consensus 318 ~~G-~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~---~~ 393 (434)
+| +|+||+++++++++.+.......+++.+++.+.++.++|+..++ +++.++++++++++++.|+++++.+ .+
T Consensus 296 -~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~ 372 (439)
T 2oat_A 296 -GGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEE--ENLAENADKLGIILRNELMKLPSDVVTAVR 372 (439)
T ss_dssp -TTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHTTSCTTTEEEEE
T ss_pred -CCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 78 99999999998877665443445788888888888888875322 2467788889999999998876542 23
Q ss_pred CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 394 SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
+. +.++++.+......+..+++++|+++ ||.+.|+
T Consensus 373 ~~-g~~~~v~l~~~~~~~~~~l~~~l~~~-Gv~v~~~ 407 (439)
T 2oat_A 373 GK-GLLNAIVIKETKDWDAWKVCLRLRDN-GLLAKPT 407 (439)
T ss_dssp EE-TTEEEEEECCCSSCCHHHHHHHHHHT-TEECCBS
T ss_pred ee-eeEEEEEEecCccHHHHHHHHHHHHC-CeEEecC
Confidence 33 44566776432102467898888765 9999985
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=242.24 Aligned_cols=301 Identities=15% Similarity=0.111 Sum_probs=212.1
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcC--C--CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDG--K--NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~--~--~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
+.|.|..+.+. +.++.+.+++.+.+.+. . ..|....+..++.+++.+.+.+.+| ++++ +|++++|+++++.+
T Consensus 20 ~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~-~v~~~~g~t~al~~ 95 (400)
T 3vax_A 20 HMTYLDAAATT-RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVS--AEPD-ELIFTSGATESNNI 95 (400)
T ss_dssp --CCCCCCCCS-SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTT--CCGG-GEEEESCHHHHHHH
T ss_pred CcEEecCCCCC-CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcC--CCCC-cEEEeCCHHHHHHH
Confidence 45556555444 56788888888887642 1 1121111223344445555554555 3466 89999999999999
Q ss_pred HHHHcc----CCCC-eEEEcCCCchhHHHHHHH---cCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCccc
Q 013883 186 TILGLI----NPGD-EVILFAPFYDSYEATLSM---AGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGK 257 (434)
Q Consensus 186 ~~~~l~----~~gd-~Vlv~~p~y~~~~~~~~~---~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~ 257 (434)
++.+++ ++|| +|+++.+.|+.+...+.. .|++++.++.++ ++.+|++.+++++++++++|++++|+||||.
T Consensus 96 ~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~ 174 (400)
T 3vax_A 96 ALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP-SGRISVEGVMERLRPDTLLVSLMHVNNETGV 174 (400)
T ss_dssp HHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT-TCCCCHHHHHTTCCTTEEEEECCSBCTTTCB
T ss_pred HHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC-CCCcCHHHHHHhcCCCceEEEEECCCCCcee
Confidence 999998 8999 999999999987665554 699999999875 7889999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEE-eChh-hH--
Q 013883 258 MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI-APPH-LT-- 333 (434)
Q Consensus 258 ~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~-~~~~-~~-- 333 (434)
+++ +++|.++|++||+++|+||+|..... ...+..+ ..+++.|++|.+|..| +|+++ ++++ +.
T Consensus 175 ~~~---l~~i~~la~~~~~~li~D~a~~~~~~---~~~~~~~-----~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~ 241 (400)
T 3vax_A 175 IQP---VAELAQQLRATPTYLHVDAAQGYGKV---PGDLTTP-----IDMISISGHKIGAPKG--VGALVTRRREEMDDE 241 (400)
T ss_dssp BCC---HHHHHHHHTTSSCEEEEECTTTTTTS---GGGGGSC-----CSEEEEETGGGTSCSS--CEEEEECBCSSSTTC
T ss_pred eCc---HHHHHHHHHhcCCEEEEEhhhhcCCC---CcChhhc-----CcEEEEeHHHhCCCCc--eEEEEEecchhcccc
Confidence 997 56789999999999999999985321 1111111 3488999999877555 67777 6551 11
Q ss_pred -HHHHHH-------hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCe---eEEEee
Q 013883 334 -WGVRQA-------HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSG---TYFVVV 402 (434)
Q Consensus 334 -~~l~~~-------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---~~~~~~ 402 (434)
..+... ......+.+...+.++..+++...+++++++++++++++++.+.|+..|+.+..+.+ +.++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 321 (400)
T 3vax_A 242 RVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLASTSFQVNGDQDHVVPHILNL 321 (400)
T ss_dssp BCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTCEECSCTTSBCTTEEEE
T ss_pred ccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhCCCCEEEeCCcccCCCCEEEE
Confidence 011111 112234556666766667776544567888999999999999999955888876654 224444
Q ss_pred ecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 403 DHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 403 ~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
.+. + .+..++++.|. +||.+.||..|
T Consensus 322 ~~~--~-~~~~~l~~~L~--~gi~v~~g~~~ 347 (400)
T 3vax_A 322 SFE--D-VDAEAFLVTLK--DLVAVATGSAS 347 (400)
T ss_dssp ECT--T-CCHHHHHHHHH--HHHHHTTTTEE
T ss_pred EeC--C-CCHHHHHHHHh--cCcEEEecccc
Confidence 443 2 25778888886 59999998644
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=238.09 Aligned_cols=306 Identities=13% Similarity=0.113 Sum_probs=206.5
Q ss_pred CeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 110 GAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 110 ~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
..+|+..+.+ .+. .++.+.+++.+++.+... +....+..+.+.++++.+.+..+ ++++ +|++++|+++++..+
T Consensus 44 ~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~--~~~~-~v~~~~ggtea~~~a 119 (429)
T 1s0a_A 44 RLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSH-VMFGGITHAPAIELCRKLVAMTP--QPLE-CVFLADSGSVAVEVA 119 (429)
T ss_dssp EEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSC-CCCSSEECHHHHHHHHHHHHHSC--TTCC-EEEEESSHHHHHHHH
T ss_pred EEEEcCccHhhccCCCCCHHHHHHHHHHHHhccc-ccccccCCHHHHHHHHHHHHhCC--CCCC-EEEEeCCHHHHHHHH
Confidence 5789887753 333 578899999998876422 21111112344455555555554 3566 899999999999999
Q ss_pred HHHcc---C----CCCeEEEcCCCchhHHHHHHHc-C-------------CEEEEEEcCC----CCC-CCCHHHHHhhcc
Q 013883 187 ILGLI---N----PGDEVILFAPFYDSYEATLSMA-G-------------AKIKCITLRP----PDF-AIPIEELKSTIS 240 (434)
Q Consensus 187 ~~~l~---~----~gd~Vlv~~p~y~~~~~~~~~~-G-------------~~~~~v~~~~----~~~-~~d~~~l~~~i~ 240 (434)
++.+. + |||+|++.+|+|+++....... | ..+..++.+. +.+ .+|++.++++++
T Consensus 120 i~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 199 (429)
T 1s0a_A 120 MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199 (429)
T ss_dssp HHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHH
T ss_pred HHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHH
Confidence 88653 2 6899999999998765433221 1 1234444431 123 479999999987
Q ss_pred c---CCcEEEecCC-CCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChh
Q 013883 241 K---NTRAILMNTP-HNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKT 315 (434)
Q Consensus 241 ~---~~~~i~~~~p-~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 315 (434)
+ ++++|+++.+ |||||. .++.+++++|+++|++||+++|+||+|.+|.+.+....+.... ...+ +.||||.
T Consensus 200 ~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~-~~~d---~~t~sK~ 275 (429)
T 1s0a_A 200 AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAE-IAPD---ILCLGKA 275 (429)
T ss_dssp HHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGT-CCCS---EEEECGG
T ss_pred hCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcC-CCCC---EEEeccc
Confidence 3 4555554444 699996 6678889999999999999999999999876544322222221 1222 3379999
Q ss_pred hcccc-ceeeeEEeChhhHHHHHHHh-----hccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC--
Q 013883 316 FSLTG-WKIGWAIAPPHLTWGVRQAH-----SFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-- 387 (434)
Q Consensus 316 ~g~~G-~R~G~~~~~~~~~~~l~~~~-----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 387 (434)
++ +| +|+||+++++++++.+.... ...+++.+.+++.++.++|+..++ ++..++++++++.+.+.|+++
T Consensus 276 l~-~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~ 352 (429)
T 1s0a_A 276 LT-GGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILES--GDWQQQVADIEVQLREQLAPARD 352 (429)
T ss_dssp GG-TSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHGGGGG
T ss_pred cc-CCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHhc
Confidence 98 68 99999999999988776531 224677788999888888874211 234566777788888888764
Q ss_pred --CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 388 --GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 388 --g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
++...++.|. |+|+++.. + .+..+++++|++ +||.+.|+
T Consensus 353 ~~~~~~~~~~g~-~~~~~~~~-~-~~~~~l~~~l~~-~Gi~v~~~ 393 (429)
T 1s0a_A 353 AEMVADVRVLGA-IGVVETTH-P-VNMAALQKFFVE-QGVWIRPF 393 (429)
T ss_dssp CTTEEEEEEETT-EEEEEESS-C-BCHHHHHHHHHH-TTEECCCB
T ss_pred CCCEEEEEEeeE-EEEEEECC-c-ccHHHHHHHHHH-CCCEEecc
Confidence 3444455555 66777643 1 246788888875 59999884
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=234.77 Aligned_cols=297 Identities=11% Similarity=0.088 Sum_probs=212.6
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCC--CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGH--GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~--G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+.++|..| ..+.++.+.+++.+... ..|.+.. ...+++++++++++...+ ++++ +|++++|+++++.+++
T Consensus 5 ~~~~~~p~--p~~~~~~v~~a~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~-~v~~~~g~t~al~~~~ 76 (385)
T 2bkw_A 5 VDTLLIPG--PIILSGAVQKALDVPSL---GHTSPEFVSIFQRVLKNTRAVFKSAAA--SKSQ-PFVLAGSGTLGWDIFA 76 (385)
T ss_dssp CCEECSSS--SCCCCHHHHHTTSCCCC---CTTSHHHHHHHHHHHHHHHHHTTCCGG--GTCE-EEEEESCTTHHHHHHH
T ss_pred cceeecCC--CcCchHHHHHHHhcccc---ccCCHHHHHHHHHHHHHHHHHhCCCCC--CCCc-eEEEcCchHHHHHHHH
Confidence 44666655 23345555555433221 1232211 245677788887765433 3456 8999999999999999
Q ss_pred HHcc---CCCCeEEEc-CCCchhHH-HHHHHcCCEEEEEEc-CCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCC
Q 013883 188 LGLI---NPGDEVILF-APFYDSYE-ATLSMAGAKIKCITL-RPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFT 260 (434)
Q Consensus 188 ~~l~---~~gd~Vlv~-~p~y~~~~-~~~~~~G~~~~~v~~-~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~ 260 (434)
.++. ++||+|+++ .|.|+.+. ..+...|++++.++. + +++.+|++.+++++++ ++++|++++|+||||.+++
T Consensus 77 ~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 155 (385)
T 2bkw_A 77 SNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLK-IGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSD 155 (385)
T ss_dssp HHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSS-TTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC
T ss_pred HHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCC-CCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcC
Confidence 9998 899999887 56676663 677889999999998 5 3677999999999987 8999999999999999997
Q ss_pred HHHHHHHHHHHHHc--CcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhc-cccceeeeEEeChhhHH-HH
Q 013883 261 REELNVIASLCIEN--DVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIAPPHLTW-GV 336 (434)
Q Consensus 261 ~e~l~~i~~la~~~--~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~~~~~~~-~l 336 (434)
+++|+++|++| |+++|+||+|.... .... +. ..+.++++.|++|.++ .+| +||+++++++++ .+
T Consensus 156 ---l~~i~~~~~~~~~~~~li~D~a~~~~~---~~~~---~~-~~~~d~~~~s~~K~~~~~~G--~G~~~~~~~~~~~~l 223 (385)
T 2bkw_A 156 ---LKAISQAIKQTSPETFFVVDAVCSIGC---EEFE---FD-EWGVDFALTASQKAIGAPAG--LSISLCSSRFMDYAL 223 (385)
T ss_dssp ---HHHHHHHHHHHCTTSEEEEECTTTTTT---SCCC---TT-TTTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHT
T ss_pred ---HHHHHHHHHhhCCCCEEEEECccccCC---cccc---cc-ccCceEEEecCccccccCCc--ceEEEEcHHHHHHHH
Confidence 56799999999 99999999997422 1111 21 1245688999999764 556 599999988776 43
Q ss_pred HH------------------H-hhcc------ccCCchHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHHHHHh-hhCCC
Q 013883 337 RQ------------------A-HSFL------TFATSTPMQWAATAALRAPETY-YEELKRDYSAKKAILVEGL-NAVGF 389 (434)
Q Consensus 337 ~~------------------~-~~~~------~~~~~~~~q~a~~~~L~~~~~~-~~~~~~~~~~~~~~l~~~L-~~~g~ 389 (434)
+. . .... ..+.+...+.++..+|+...++ +++++++++++++.+.+.| +++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 303 (385)
T 2bkw_A 224 NDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQL 303 (385)
T ss_dssp CHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 21 0 1111 1346666677777777653333 6778899999999999999 88888
Q ss_pred EeecCC-----eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 390 KVFPSS-----GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 390 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
.+..+. .+.++++.+. +..+++++|.+ +||.+.||..|
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~-~gi~v~~g~~~ 346 (385)
T 2bkw_A 304 TSVSRYPSNMSAHGLTAVYVA-----DPPDVIAFLKS-HGVVIAGGIHK 346 (385)
T ss_dssp EESSCSSSTTBCSSCEEEECS-----CHHHHHHHHHH-TTEECBCCCCT
T ss_pred eecccCcccccCCceEEEecC-----CHHHHHHHHHH-CCeEEeCCCCc
Confidence 887532 4556777763 26678888864 69999998653
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=240.57 Aligned_cols=297 Identities=14% Similarity=0.074 Sum_probs=199.3
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCC---------CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGH---------GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~---------G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~ 180 (434)
+.+.|..+.+. ++++.+.+++.+.+.+ ...|+... ...++|++++++++ ++++ +|++++|++
T Consensus 18 ~~~~Ld~~~~~-~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~-~v~~~~g~t 88 (432)
T 3a9z_A 18 RKVYMDYNATT-PLEPEVIQAVTEAMKE-AWGNPSSSYVAGRKAKDIINTARASLAKMIG------GKPQ-DIIFTSGGT 88 (432)
T ss_dssp CCEECBTTTCC-CCCHHHHHHHHHHHHH-CCSCTTCSSHHHHHHHHHHHHHHHHHHHHHT------CCGG-GEEEESCHH
T ss_pred CcEEeeCCccC-CCCHHHHHHHHHHHHH-hcCCCccCcHHHHHHHHHHHHHHHHHHHHcC------CCcC-eEEEeCChH
Confidence 67888888666 6678889999888765 33343321 12478888888775 4566 899999999
Q ss_pred HHHHHHHHHcc--------CCCCeEEEcCCCchhH-----------------HHHHHHcCCEEEEEEcCCCCCCCCHHHH
Q 013883 181 EAIAATILGLI--------NPGDEVILFAPFYDSY-----------------EATLSMAGAKIKCITLRPPDFAIPIEEL 235 (434)
Q Consensus 181 ~ai~~~~~~l~--------~~gd~Vlv~~p~y~~~-----------------~~~~~~~G~~~~~v~~~~~~~~~d~~~l 235 (434)
+++.+++.+++ ++||+|+++.|+|+.+ ....+..|++++.+|++++++.+|++.|
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l 168 (432)
T 3a9z_A 89 ESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDI 168 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHH
T ss_pred HHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHH
Confidence 99999999886 5899999999999764 3344557999999998764678999999
Q ss_pred HhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcC----------cEEEEcCcCCccccCCCCccccCCCCCCCc
Q 013883 236 KSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIEND----------VLVFSDEVYDKLAFEMDHISIASLPGMYER 305 (434)
Q Consensus 236 ~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~----------~~iI~Deay~~~~~~~~~~~~~~~~~~~~~ 305 (434)
++++++++++|++++|+||||.+++.+ +|.++|++++ +++|+||+|..+. ....+..+ +.
T Consensus 169 ~~~i~~~~~~v~~~~~~nptG~~~~~~---~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~---~~~~~~~~----~~ 238 (432)
T 3a9z_A 169 LAAVRPTTCLVTIMLANNETGVIMPIS---EISRRIKALNQIRAASGLPRVLVHTDAAQALGK---RRVDVEDL----GV 238 (432)
T ss_dssp HHTCCTTEEEEECCSBCTTTCBBCCHH---HHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT---SCCCHHHH----CC
T ss_pred HHhccCCceEEEEECcccCcccccCHH---HHHHHHHhcCcccccccCCceEEEEEchhhhCC---cccChhhc----CC
Confidence 999998999999999999999999864 5888899998 9999999997632 11122111 12
Q ss_pred eEEEccCChhhccccceeeeEEeChhh-HHHHHHH-------hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 013883 306 TVTMNSLGKTFSLTGWKIGWAIAPPHL-TWGVRQA-------HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKK 377 (434)
Q Consensus 306 ~i~i~S~SK~~g~~G~R~G~~~~~~~~-~~~l~~~-------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~ 377 (434)
.+++.|++|.+| +|+||++++++. ...+... .....++.+.+.+.++.++|+..+++++++++++++++
T Consensus 239 d~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~ 315 (432)
T 3a9z_A 239 DFLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIR 315 (432)
T ss_dssp SEEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356899999775 569999998765 2222211 12234556777777777777754557788899999999
Q ss_pred HHHHHHhhhC-CCEee--cC-----CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 378 AILVEGLNAV-GFKVF--PS-----SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 378 ~~l~~~L~~~-g~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
+++.+.|+++ |+.+. .+ ..+.++++.+...+. +..++.+.+ .||.+.+|..
T Consensus 316 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l---~~i~~~~G~~ 374 (432)
T 3a9z_A 316 DYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQL-RGYMVLAQC---QTLLASVGAS 374 (432)
T ss_dssp HHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTC-CHHHHHHHC---SSEECBSSCG
T ss_pred HHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCC-cHHHHHHHh---cCeEEecccc
Confidence 9999999884 65443 22 112233333332222 345555543 2677766643
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-28 Score=243.82 Aligned_cols=309 Identities=12% Similarity=0.065 Sum_probs=206.1
Q ss_pred CeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 110 GAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 110 ~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
..+||..+.+ .+. .++.+.+++.+++.+..+ +.. .+..+++.++++.+.+.++. +++ +|++++|+++++..+
T Consensus 44 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~-~~~~~~~~~l~~~la~~~~~--~~~-~v~~~~gg~ea~~~a 118 (433)
T 1zod_A 44 AILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFS-EMLSRPVVDLATRLANITPP--GLD-RALLLSTGAESNEAA 118 (433)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC-CCT-TCCCHHHHHHHHHHHHHSCT--TCC-EEEEESCHHHHHHHH
T ss_pred EEEEcccchhccccCCCCHHHHHHHHHHHHhCcc-ccc-ccCCHHHHHHHHHHHHhCCC--CcC-EEEEeCchHHHHHHH
Confidence 4678866532 233 478899999998876432 222 23345667777777776664 356 899999999999999
Q ss_pred HHHcc--CCCCeEEEcCCCchhHHHHHHHc-C-----------CEEEEEEcCC---CCCC--------CCHHHHHhhccc
Q 013883 187 ILGLI--NPGDEVILFAPFYDSYEATLSMA-G-----------AKIKCITLRP---PDFA--------IPIEELKSTISK 241 (434)
Q Consensus 187 ~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-G-----------~~~~~v~~~~---~~~~--------~d~~~l~~~i~~ 241 (434)
++.+. ..+|+|++.+|+|+++....... + ..+..++... ..++ +|++.+++++++
T Consensus 119 ~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~ 198 (433)
T 1zod_A 119 IRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDR 198 (433)
T ss_dssp HHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHh
Confidence 88653 34589999999998765443322 1 1334444321 0122 369999998873
Q ss_pred ----CCcEEEecCC-CCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChh
Q 013883 242 ----NTRAILMNTP-HNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKT 315 (434)
Q Consensus 242 ----~~~~i~~~~p-~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 315 (434)
++++|+ ++| +||||. +++.+++++|+++|++||+++|+||+|.+|.+.+....+.... ...+ +.||||.
T Consensus 199 ~~~~~~~~vi-~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~-~~~d---i~s~sK~ 273 (433)
T 1zod_A 199 QSSGNLAAFI-AEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDG-VTPD---ILTLSKT 273 (433)
T ss_dssp HCCSCEEEEE-ECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHT-CCCS---EEEECHH
T ss_pred cCCCCeEEEE-EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcC-CCCC---EEEeccc
Confidence 445555 456 688996 6788889999999999999999999999886554322222111 1112 4489999
Q ss_pred hccccceeeeEEeChhhHHHHHHHhhc--cccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC----C-
Q 013883 316 FSLTGWKIGWAIAPPHLTWGVRQAHSF--LTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV----G- 388 (434)
Q Consensus 316 ~g~~G~R~G~~~~~~~~~~~l~~~~~~--~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g- 388 (434)
+| .|+|+||+++++++++.+...... .+++.+.+++.++.++|+..++ +++.++++++++.+++.|+++ +
T Consensus 274 ~~-~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~ 350 (433)
T 1zod_A 274 LG-AGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR--DGLVARANVMGDRLRRGLLDLMERFDC 350 (433)
T ss_dssp HH-TTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cc-CCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99 599999999999998888763322 5677889999888888864221 234556666666666666553 3
Q ss_pred CEeecCCeeEEEeeecCCCC------CCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 389 FKVFPSSGTYFVVVDHTPFG------HETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+...++.|. |+|+++.... ..+..+++++|++ +||.+.||..|
T Consensus 351 ~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~ 399 (433)
T 1zod_A 351 IGDVRGRGL-LLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIVQLP 399 (433)
T ss_dssp EEEEEEETT-EEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEECCT
T ss_pred eEEEEEEEE-EEEEEEecCccccCCChHHHHHHHHHHHH-CCCeEeccCCC
Confidence 334455555 4466653210 1135678888875 59999998754
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=239.15 Aligned_cols=313 Identities=13% Similarity=0.031 Sum_probs=214.4
Q ss_pred CCeeEeCCC--CCCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQG--FPNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g--~p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...+||..| ...+. .+|.+.+++.+++.+....|....+..++++++++++.+.++. +.+ +|++++|+++++..
T Consensus 50 ~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~--~~~-~v~~~~ggseA~~~ 126 (459)
T 4a6r_A 50 NKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPA--GFD-RVFYTNSGSESVDT 126 (459)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCT--TCC-EEEEESSHHHHHHH
T ss_pred CEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCC--CCC-EEEEeCchHHHHHH
Confidence 357888776 22232 3688999999998875545665556668888899988887653 455 89999999999999
Q ss_pred HHHHccC--------CCCeEEEcCCCchhHHHHHHHcCC-------------EEEEEEcCC----CCCCCC--------H
Q 013883 186 TILGLIN--------PGDEVILFAPFYDSYEATLSMAGA-------------KIKCITLRP----PDFAIP--------I 232 (434)
Q Consensus 186 ~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~----~~~~~d--------~ 232 (434)
+++.+++ +++.|++.+|+|+++......++. .+..++... .++ .| +
T Consensus 127 al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~ 205 (459)
T 4a6r_A 127 MIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAA 205 (459)
T ss_dssp HHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHH
Confidence 9998875 579999999999987765554432 233343221 112 45 7
Q ss_pred HHHHhhccc----CCcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceE
Q 013883 233 EELKSTISK----NTRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTV 307 (434)
Q Consensus 233 ~~l~~~i~~----~~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i 307 (434)
+.|++++.. ++++|+++.++|++|. +++.+.+++|.++|++||+++|+||+|.+|.+.|.......+...++
T Consensus 206 ~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pd--- 282 (459)
T 4a6r_A 206 RWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPD--- 282 (459)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCS---
T ss_pred HHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCC---
Confidence 888888863 3455555444555666 55889999999999999999999999999876664332222222222
Q ss_pred EEccCChhhccccceeeeEEeChhhHHHHH---HHhhccccCCchHHHHHHHHHHhCC--hHHHHHHH-HHHHHHHHHHH
Q 013883 308 TMNSLGKTFSLTGWKIGWAIAPPHLTWGVR---QAHSFLTFATSTPMQWAATAALRAP--ETYYEELK-RDYSAKKAILV 381 (434)
Q Consensus 308 ~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~---~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~-~~~~~~~~~l~ 381 (434)
+.+|||.++..|+|+||+++++++++.+. ......+++.+++++.++.++|+.. ++++++.+ +..+..++.+.
T Consensus 283 -i~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~ 361 (459)
T 4a6r_A 283 -LFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWR 361 (459)
T ss_dssp -EEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHH
T ss_pred -eeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 44789999844499999999999998887 3334457889999999999999842 23445555 44455555555
Q ss_pred HHhhhCC-CEeecCCeeEEEeeecCCCCC---------CCHHHHHHHHHHhcCeEEECCC
Q 013883 382 EGLNAVG-FKVFPSSGTYFVVVDHTPFGH---------ETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 382 ~~L~~~g-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+.|.+.+ +..+++.|.|+ ++.+..... ....++++.|+++ ||.+.|+.
T Consensus 362 ~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~g 419 (459)
T 4a6r_A 362 ETFSRFEHVDDVRGVGMVQ-AFTLVKNKAKRELFPDFGEIGTLCRDIFFRN-NLIMRACG 419 (459)
T ss_dssp HHHTTCTTEEEEEEETTEE-EEEECSBTTTTBCCSSTTHHHHHHHHHHHHT-TEECEEET
T ss_pred HHHhcCCCeEEEEEEEEEE-EEEEecCccccccccchHHHHHHHHHHHHHC-CeEEecCC
Confidence 5565553 45556666654 444432110 0145677888765 99999853
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=238.04 Aligned_cols=299 Identities=14% Similarity=0.128 Sum_probs=201.5
Q ss_pred CCeeEeCCC--CCCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQG--FPNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g--~p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...|||..| ...++ .+|.+.+++.+++.+.. .|... ...+++.++++.+.+..| .+ +|++++|+++|+..
T Consensus 65 ~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~-~~~~~-~~~~~~~~l~~~la~~~g----~~-~v~~~~sGseA~~~ 137 (433)
T 1z7d_A 65 KRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLT-ICSRA-FFSVPLGICERYLTNLLG----YD-KVLMMNTGAEANET 137 (433)
T ss_dssp CEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCS-CCCTT-SEEHHHHHHHHHHHHHHT----CS-EEEEESSHHHHHHH
T ss_pred CEEEEcccchhhcccCCCCHHHHHHHHHHHHhCC-CccCC-cCCHHHHHHHHHHHhhcC----CC-eEEEeCCHHHHHHH
Confidence 357898876 44566 78999999999887632 22221 123445555555555544 45 89999999999999
Q ss_pred HHHHcc---------CCC-CeEEEcCCCchhHHH-HHHHcC------------CEEEEEEcCCCCCCCCHHHHHhhc-cc
Q 013883 186 TILGLI---------NPG-DEVILFAPFYDSYEA-TLSMAG------------AKIKCITLRPPDFAIPIEELKSTI-SK 241 (434)
Q Consensus 186 ~~~~l~---------~~g-d~Vlv~~p~y~~~~~-~~~~~G------------~~~~~v~~~~~~~~~d~~~l~~~i-~~ 241 (434)
+++.+. .+| |+|++.+|+|+++.. .+...| .++..+|+. |++.+++++ ++
T Consensus 138 al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~------d~~~le~~l~~~ 211 (433)
T 1z7d_A 138 AYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD------DLEALEEELKDP 211 (433)
T ss_dssp HHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTT------CHHHHHHHHTST
T ss_pred HHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCC------CHHHHHHHhCCC
Confidence 988753 467 999999999988654 333333 234444432 899999999 46
Q ss_pred CCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccc
Q 013883 242 NTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTG 320 (434)
Q Consensus 242 ~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G 320 (434)
++++|+++..+|++|.+ ++.+.+++|.++|++||+++|+||+|.+|.+.+.......+...++ +.||||.+| +|
T Consensus 212 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~d----i~t~sK~l~-~G 286 (433)
T 1z7d_A 212 NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPD----VILLGKALS-GG 286 (433)
T ss_dssp TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS----EEEECGGGG-TT
T ss_pred CEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCC----EEEECcccc-CC
Confidence 67777666557789975 6888999999999999999999999998765554322222211122 338999999 89
Q ss_pred -ceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC--CCE---eecC
Q 013883 321 -WKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV--GFK---VFPS 394 (434)
Q Consensus 321 -~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~---~~~~ 394 (434)
+|+||+++++++++.+.......+++.+++.+.++.++|+..++ +++.++++++++++.+.|+++ ++. ..++
T Consensus 287 ~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~ 364 (433)
T 1z7d_A 287 HYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLIN--EKLCENAEKLGGPFLENLKRELKDSKIVRDVRG 364 (433)
T ss_dssp SSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE
T ss_pred CCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 99999999998877665443456788888988888888875321 245666777777787777664 442 2334
Q ss_pred CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 395 SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
.| .++++.+.... .+..+++++|+++ ||.+.|+
T Consensus 365 ~g-~~~~i~~~~~~-~~~~~~~~~l~~~-Gv~v~~~ 397 (433)
T 1z7d_A 365 KG-LLCAIEFKNEL-VNVLDICLKLKEN-GLITRDV 397 (433)
T ss_dssp ET-TEEEEEECTTT-CCHHHHHHHHHHT-TEECCEE
T ss_pred ee-eEEEEEEccCh-hHHHHHHHHHHHC-CeEEecC
Confidence 44 45667764321 2467899888765 9999884
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=239.21 Aligned_cols=311 Identities=12% Similarity=0.066 Sum_probs=209.8
Q ss_pred CCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...|||..|. ..+. .+|.+.+++.+++.+..+ ....+..+++.++++++.+.++.. . +|++++|+++++..
T Consensus 49 ~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~~~---~-~v~~~~ggseA~~~ 122 (452)
T 3n5m_A 49 KRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY--FPMSQSHEPAIKLAEKLNEWLGGE---Y-VIFFSNSGSEANET 122 (452)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC--CCTTSEEHHHHHHHHHHHHHHTSC---E-EEEEESSHHHHHHH
T ss_pred CEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC--cccccCCHHHHHHHHHHHHhCCCC---c-eEEEeCchHHHHHH
Confidence 3578988772 2222 478899999998876433 233355677777888877766532 2 39999999999999
Q ss_pred HHHHcc-----C---CCCeEEEcCCCchhHHHHHHHcCCE-------------EEEEEcCCC-CCC-CC---------HH
Q 013883 186 TILGLI-----N---PGDEVILFAPFYDSYEATLSMAGAK-------------IKCITLRPP-DFA-IP---------IE 233 (434)
Q Consensus 186 ~~~~l~-----~---~gd~Vlv~~p~y~~~~~~~~~~G~~-------------~~~v~~~~~-~~~-~d---------~~ 233 (434)
+++.+. . ++|+|++.+|+|+++......++.. +..++.... ... -| ++
T Consensus 123 al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (452)
T 3n5m_A 123 AFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVK 202 (452)
T ss_dssp HHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHH
Confidence 999887 5 7899999999999876655554332 334443210 000 12 89
Q ss_pred HHHhhcc----cCCcEEEecCC-CCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceE
Q 013883 234 ELKSTIS----KNTRAILMNTP-HNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTV 307 (434)
Q Consensus 234 ~l~~~i~----~~~~~i~~~~p-~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i 307 (434)
.|+++++ +++++|+++.+ +| ||.++ +.+.+++|.++|++||+++|+||+|.+|.+.|...........++
T Consensus 203 ~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~d--- 278 (452)
T 3n5m_A 203 EVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPD--- 278 (452)
T ss_dssp HHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCS---
T ss_pred HHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCC---
Confidence 9999987 46677777777 89 99766 888899999999999999999999999876654333332221122
Q ss_pred EEccCChhhcccc-ceeeeEEeChhhHHHHHH---Hh---hccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHH
Q 013883 308 TMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQ---AH---SFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKA 378 (434)
Q Consensus 308 ~i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~---~~---~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~ 378 (434)
+.+|||.++ .| +|+||+++++++++.+.. .. ...+++.+++++.++.++|+.. ++.++++++..+..++
T Consensus 279 -i~t~sK~l~-~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 356 (452)
T 3n5m_A 279 -IITMAKGIT-SAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLE 356 (452)
T ss_dssp -EEEECGGGG-TTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred -EEeeccccc-CCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 447999999 59 999999999998877642 11 2357788999999999888742 2234444444444444
Q ss_pred HHHHHhhhCC-CEeecCCeeEEEeeecCCCCCC-------CHHHHHHHHHHhcCeEEECCCCC
Q 013883 379 ILVEGLNAVG-FKVFPSSGTYFVVVDHTPFGHE-------TDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 379 ~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
.+.+.+.+.+ +...++.|.|+. +.+...... ...++++.|+++ ||.+.|+..|
T Consensus 357 ~L~~~~~~~~~~~~~~~~g~~~~-i~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~ 417 (452)
T 3n5m_A 357 QLKEEIGEHPLVGDIRGKGLLVG-IELVNDKETKEPIDNDKIASVVNACKEK-GLIIGRNGMT 417 (452)
T ss_dssp HHHHHHTTCTTEEEEEESSSCEE-EEEEEETTTTEECCHHHHHHHHHHHHHT-TEECEECTTS
T ss_pred HHHHHHhcCCCeEEEEEEEEEEE-EEEecCCcccCCCCHHHHHHHHHHHHHC-CcEEeecCcc
Confidence 4544444443 445566666553 433211100 124677777765 9999998754
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=228.52 Aligned_cols=289 Identities=18% Similarity=0.179 Sum_probs=205.8
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCC-CCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYA-RGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~-~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
++++|+.|.|.++ +.+.+++.+.+..+ .|. +..+..+||++++++++ .+ ++++++|+++++..++.
T Consensus 23 ~~~~l~~~~p~~~--~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~~--------~~-~~i~~~~gt~al~~~l~ 89 (391)
T 3dr4_A 23 DLPRISVAAPRLD--GNERDYVLECMDTT--WISSVGRFIVEFEKAFADYCG--------VK-HAIACNNGTTALHLALV 89 (391)
T ss_dssp -----CCCCCCCC--SSHHHHHHHHHHHT--CCSSCSHHHHHHHHHHHHHHT--------CS-EEEEESSHHHHHHHHHH
T ss_pred CCceeccCCCCCC--HHHHHHHHHHHHcC--CccCCChHHHHHHHHHHHHhC--------CC-cEEEeCCHHHHHHHHHH
Confidence 6788999988654 66777787777654 455 56688999999999987 33 67888888999999999
Q ss_pred Hc-cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 189 GL-INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 189 ~l-~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
++ +++||+|+++.|+|+.+...+...|++++.++.+++++.+|++.+++++++++++|+ |+||||...+ +++|
T Consensus 90 ~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~---~~~i 163 (391)
T 3dr4_A 90 AMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIM---PVHLYGQICD---MDPI 163 (391)
T ss_dssp HHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCTTEEEEC---CBCGGGCCCC---HHHH
T ss_pred HcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcCCCceEEE---EECCCCChhh---HHHH
Confidence 99 999999999999999999999999999999999876889999999999988888877 5789999874 6779
Q ss_pred HHHHHHcCcEEEEcCcCCccc-cCCCCccccCCCCCCCceEEEccCC--hhhccccceeeeEEeCh-hhHHHHHHHhhcc
Q 013883 268 ASLCIENDVLVFSDEVYDKLA-FEMDHISIASLPGMYERTVTMNSLG--KTFSLTGWKIGWAIAPP-HLTWGVRQAHSFL 343 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~-~~~~~~~~~~~~~~~~~~i~i~S~S--K~~g~~G~R~G~~~~~~-~~~~~l~~~~~~~ 343 (434)
+++|+++|+++|+|++|.... +.+. ....+ .+ +.+.||+ |.++ |.+.|+++++. ++.+.++......
T Consensus 164 ~~l~~~~~~~li~D~a~~~g~~~~~~--~~~~~---~d--i~~~S~s~~K~l~--~g~gg~~~~~~~~~~~~~~~~~~~g 234 (391)
T 3dr4_A 164 LEVARRHNLLVIEDAAEAVGATYRGK--KSGSL---GD--CATFSFFGNAIIT--TGEGGMITTNDDDLAAKMRLLRGQG 234 (391)
T ss_dssp HHHHHHTTCEEEEECTTCTTCEETTE--ETTSS---SS--EEEEECBTTSSSC--CBSCEEEEESCHHHHHHHHHHHBTT
T ss_pred HHHHHHcCCEEEEECcccccceECCe--eeccc---CC--EEEEECCCCCcCC--cCCeEEEEECCHHHHHHHHHHHhcC
Confidence 999999999999999998633 2221 11111 12 6677777 6664 56789988864 5777776654322
Q ss_pred c--------------cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecC------CeeE-EEee
Q 013883 344 T--------------FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPS------SGTY-FVVV 402 (434)
Q Consensus 344 ~--------------~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~------~~~~-~~~~ 402 (434)
. +..+.....+....+. .+++..++.+++++.+.+.|++.|+.+..+ ..++ ++++
T Consensus 235 ~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i 310 (391)
T 3dr4_A 235 MDPNRRYWFPIVGFNYRMTNIQAAIGLAQLE----RVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTV 310 (391)
T ss_dssp CCTTSTTCCSSCCCBCBCCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCCCCSSEEE
T ss_pred CCCCCcccccccccccCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCCCcceeEEEEE
Confidence 1 2223333322222232 345566777778888888888878776544 2232 2344
Q ss_pred ecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 403 DHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 403 ~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
.+......+..++.++|.++ ||.+.+|.
T Consensus 311 ~~~~~~~~~~~~l~~~L~~~-GI~v~~~~ 338 (391)
T 3dr4_A 311 RLGEGLSTTRDQVIKDLDAL-GIESRPVF 338 (391)
T ss_dssp EECSSCSSCHHHHHHHHHHT-TCCCEECC
T ss_pred EECCccchhHHHHHHHHHHC-CCceeecC
Confidence 44321112477888888665 99999884
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=237.66 Aligned_cols=297 Identities=13% Similarity=0.085 Sum_probs=221.9
Q ss_pred CCcHHHHHHHHHHHHc----CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccC-----
Q 013883 122 DGPDFVKDAAIQAIRD----GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLIN----- 192 (434)
Q Consensus 122 ~~~~~v~~~~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~----- 192 (434)
.+++.+.+.+.+++.. ....|....|..++++.+++++.+.+|.+.+++ ++++++|+++++.+++.++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~-~~~~~~ggt~a~~~a~~a~~~~~~~~ 153 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTG-CGTTTSGGTESLLLACLSAKMYALHH 153 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTC-CEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCC-eEEEcCcHHHHHHHHHHHHHHHHHhc
Confidence 4457788888888765 334455556778999999999999999876666 899999999999999998865
Q ss_pred CC---CeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHH
Q 013883 193 PG---DEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIAS 269 (434)
Q Consensus 193 ~g---d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~ 269 (434)
+| |+|+++.|+|..+...+...|++++.||++++++.+|++.|++++++++++|++++|+||||.+.+ +++|++
T Consensus 154 ~g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~---l~~i~~ 230 (497)
T 3mc6_A 154 RGITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADD---IEGLGK 230 (497)
T ss_dssp SCCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCS---CTTTTT
T ss_pred CCCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCC---HHHHHH
Confidence 56 899999999999999999999999999998657889999999999999999999999999999975 667999
Q ss_pred HHHHcCcEEEEcCcCCccccC-----C-CCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcc
Q 013883 270 LCIENDVLVFSDEVYDKLAFE-----M-DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL 343 (434)
Q Consensus 270 la~~~~~~iI~Deay~~~~~~-----~-~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~ 343 (434)
+|++||+++|+|++|.++... + ...+...+ ...+..+++.|++|.++ +|.++||++++.+.+..........
T Consensus 231 la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~-~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~ 308 (497)
T 3mc6_A 231 IAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDF-RVPGVTSISCDTHKYGF-APKGSSVIMYRNSDLRMHQYYVNPA 308 (497)
T ss_dssp HHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCST-TSTTCCEEEEETTTTTC-CCSSCEEEECSSHHHHTTTSCCBTT
T ss_pred HHHHhCCEEEEECcchhhhhhhhhhhcccCCccccc-cCCCCcEEEECchhhcC-CCCCceeEEecCHHHHhhhhccccc
Confidence 999999999999999865432 1 00100111 12234678889999875 7888999999876554321111000
Q ss_pred ----cc-------CCc---hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC--CCEee-cCCeeEEEeeecCC
Q 013883 344 ----TF-------ATS---TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV--GFKVF-PSSGTYFVVVDHTP 406 (434)
Q Consensus 344 ----~~-------~~~---~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~-~~~~~~~~~~~~~~ 406 (434)
.+ +.+ ..++.++...|. .+.+++..+++.++++++.+.|++. |+.+. ++.++++.|. ..
T Consensus 309 ~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~--~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~-~~- 384 (497)
T 3mc6_A 309 WTGGLYGSPTLAGSRPGAIVVGCWATMVNMG--ENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFS-SK- 384 (497)
T ss_dssp CTTSCBCCSSSCSSCBHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEE-CT-
T ss_pred ccCCCcCCcCcccCCcchhHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEe-CC-
Confidence 00 001 233555555554 3456778888999999999999984 88887 4566666553 22
Q ss_pred CCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 407 FGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 407 ~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+ .+..++.++|.++ ||.+.++.
T Consensus 385 -~-~~~~~l~~~L~~~-Gi~v~~~~ 406 (497)
T 3mc6_A 385 -T-LNIHELSDRLSKK-GWHFNALQ 406 (497)
T ss_dssp -T-TTHHHHHHHHHTT-TCBCEECC
T ss_pred -C-CCHHHHHHHHHhC-CEEEecCC
Confidence 2 2577888888765 99988764
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=239.22 Aligned_cols=307 Identities=19% Similarity=0.115 Sum_probs=195.7
Q ss_pred CCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...+||..|.. .+. .+|.+.+++.+++.+....+.+.....+|+++++++ ++ +++ +|++++|+++++..
T Consensus 55 ~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~----~~---~~~-~v~~~~sGsea~~~ 126 (434)
T 3l44_A 55 NKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALEVKFAKMLKEA----MP---ALD-KVRFVNSGTEAVMT 126 (434)
T ss_dssp CEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHH----CT---TCS-EEEEESSHHHHHHH
T ss_pred CEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHh----CC---CCC-EEEEeCchHHHHHH
Confidence 35789887742 233 478999999998876432222222334555555554 33 356 89999999999999
Q ss_pred HHHHccC--CCCeEEEcCCCchhHHHHHHHcCC-EEEEEEcCCCCCC-------------CCHHHHHhhccc---CCcEE
Q 013883 186 TILGLIN--PGDEVILFAPFYDSYEATLSMAGA-KIKCITLRPPDFA-------------IPIEELKSTISK---NTRAI 246 (434)
Q Consensus 186 ~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~G~-~~~~v~~~~~~~~-------------~d~~~l~~~i~~---~~~~i 246 (434)
+++.+.. ++++|++.+|+|+++...+...+. ....+......+. -|++.+++++++ ++++|
T Consensus 127 ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~v 206 (434)
T 3l44_A 127 TIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAI 206 (434)
T ss_dssp HHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEE
T ss_pred HHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEE
Confidence 9987764 779999999999886544333222 1111111100011 189999998873 45555
Q ss_pred EecCCCCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeee
Q 013883 247 LMNTPHNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGW 325 (434)
Q Consensus 247 ~~~~p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~ 325 (434)
+++.++|++|.+. +.+.+++|.++|++||+++|+||+|.+| ..+.......+...++ +.||||.+| +|+|+||
T Consensus 207 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~~d----i~t~sK~~~-~G~~iG~ 280 (434)
T 3l44_A 207 LVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPD----LTALGKVIG-GGLPIGA 280 (434)
T ss_dssp EECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCCCS----EEEEEGGGG-TTSSCEE
T ss_pred EEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCCCCC----eeehhhhhc-CCcCeee
Confidence 5555566666655 8888999999999999999999999998 5543322222221122 558999999 8999999
Q ss_pred EEeChhhHHHHHHH---hhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCC-EeecCCeeEE
Q 013883 326 AIAPPHLTWGVRQA---HSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGF-KVFPSSGTYF 399 (434)
Q Consensus 326 ~~~~~~~~~~l~~~---~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~ 399 (434)
+++++++++.+... ....+++.+++++.++.++|+.. ++++++.++..+..++.|.+.+.+.++ ...++.|.|+
T Consensus 281 ~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~ 360 (434)
T 3l44_A 281 YGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGAL 360 (434)
T ss_dssp EEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEE
T ss_pred EEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEE
Confidence 99999998776542 23347888999999998888732 334444444444444444444444454 3344455544
Q ss_pred EeeecCCCCCC-----------CHHHHHHHHHHhcCeEEECCC
Q 013883 400 VVVDHTPFGHE-----------TDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 400 ~~~~~~~~~~~-----------~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
++.+...... ...++++.|+++ ||.+.||.
T Consensus 361 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~ 401 (434)
T 3l44_A 361 -TVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE-GVNLAPSK 401 (434)
T ss_dssp -EEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHT-TEECCSST
T ss_pred -EEEEecCcccchhhccccCHHHHHHHHHHHHHC-CeEEeecC
Confidence 4443221111 125677777765 99999975
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-27 Score=238.39 Aligned_cols=305 Identities=15% Similarity=0.114 Sum_probs=217.1
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCC-C------CCCCCCcHHHHHHHHHHHHhhcCCCCCC--CCcEEEcCCh
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKN-Q------YARGHGVPEFNSAIASRFKKDSGLEVDP--EKEVTVTSGC 179 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~-~------Y~~~~G~~~lr~~ia~~l~~~~g~~~~~--~~~i~~t~G~ 179 (434)
.+.|+|..+.+ +.++.+.+++.+.+.+... + |....+..++++.+.+++.+.+|.+.+. . +|++++|+
T Consensus 44 ~~~i~L~a~e~--~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~-~V~~~sGs 120 (483)
T 1rv3_A 44 RVGLELIASEN--FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGV-NVQPYSGS 120 (483)
T ss_dssp HSSEECCTTCC--CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEE-ECCCSSHH
T ss_pred hcCeEEEcCCC--CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCce-EEEECCcH
Confidence 36799977754 3578888888777765321 2 3333345678888888998888875322 2 48888887
Q ss_pred HHHHHHHHHHccCCCCeEEEcCCCchhHHH--------HHHHcC--CEEEEEEcCCCCCCCCHHHHHhhcc-cCCcEEEe
Q 013883 180 TEAIAATILGLINPGDEVILFAPFYDSYEA--------TLSMAG--AKIKCITLRPPDFAIPIEELKSTIS-KNTRAILM 248 (434)
Q Consensus 180 ~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~G--~~~~~v~~~~~~~~~d~~~l~~~i~-~~~~~i~~ 248 (434)
+++.+++.++++|||+|++++|.|.++.. .+...| .+++.++++++++.+|+|.|+++++ .++|+|++
T Consensus 121 -~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~ 199 (483)
T 1rv3_A 121 -PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA 199 (483)
T ss_dssp -HHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE
T ss_pred -HHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE
Confidence 88888899999999999999999887653 223344 4555555565678899999999998 79999999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCC-ccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEE
Q 013883 249 NTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYD-KLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI 327 (434)
Q Consensus 249 ~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~-~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~ 327 (434)
+++||+ .+.+ +++|.++|+++|+++|+|++|. ++.+.+..... +. ...+++.|++|.+ .|+|.||++
T Consensus 200 -~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p--~~---~~div~~s~~K~l--~GprgG~i~ 267 (483)
T 1rv3_A 200 -GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSP--FE---HCHVVTTTTHKTL--RGCRAGMIF 267 (483)
T ss_dssp -CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCG--GG---TCSEEEEESSGGG--CCCSCEEEE
T ss_pred -eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCCCCC--CC---CCcEEEecCcccC--CCCCceEEE
Confidence 899998 7775 7789999999999999999986 44333322111 11 2347889999987 589999999
Q ss_pred eChh---------------hHHHHHHHhhcc-ccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCE
Q 013883 328 APPH---------------LTWGVRQAHSFL-TFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFK 390 (434)
Q Consensus 328 ~~~~---------------~~~~l~~~~~~~-~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 390 (434)
++++ +...+....... ..+++.....++..+++.. ..++++.+++++++++.+.+.|++.|++
T Consensus 268 ~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 347 (483)
T 1rv3_A 268 YRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYK 347 (483)
T ss_dssp EECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred EcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCE
Confidence 9875 333343322111 2233344444555556542 3467888999999999999999999999
Q ss_pred eecCC-eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE----CCC
Q 013883 391 VFPSS-GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI----PTS 431 (434)
Q Consensus 391 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~----pG~ 431 (434)
+..+. .++++|+++...+. +..++.+. +++.||.+. ||.
T Consensus 348 ~~~~~~~~~~~~v~~~~~g~-~~~~~~~~-L~~~gI~v~~~~~pg~ 391 (483)
T 1rv3_A 348 IVTGGSDNHLILVDLRSKGT-DGGRAEKV-LEACSIACNKNTCPGD 391 (483)
T ss_dssp EGGGSCSSSEEEEEGGGGTC-CHHHHHHH-HHHTTEECEEECCSSC
T ss_pred eccCCCCCceEEEeccCCCC-CHHHHHHH-HHhCCcEEecCCCCCC
Confidence 87653 45678888765444 45566554 467899999 986
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=242.01 Aligned_cols=293 Identities=16% Similarity=0.174 Sum_probs=207.7
Q ss_pred CeeEeCCC-CCCCCCcHHHHHHHHHH----HHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 110 GAINLGQG-FPNFDGPDFVKDAAIQA----IRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 110 ~~i~l~~g-~p~~~~~~~v~~~~~~~----~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+.|+|+.| .|+++.++.+.++.... ...+.+.|. ..|.+ +++++++++.+.+|. + ++++++|+++++.
T Consensus 90 ~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~-~~g~~-~~~~l~~~la~~~g~----~-~~i~~~sGt~al~ 162 (464)
T 1ibj_A 90 LLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYT-RSGNP-TRDALESLLAKLDKA----D-RAFCFTSGMAALS 162 (464)
T ss_dssp HHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBT-TTCCH-HHHHHHHHHHHHHTC----S-EEEEESSHHHHHH
T ss_pred eEEECCCCCCCCCCCCccHHhhhhhhhhcccccCCcccc-CCCCH-HHHHHHHHHHHHhCC----C-eEEEECCHHHHHH
Confidence 57889887 78887777776655432 223346677 45665 788888888887774 3 5666677788998
Q ss_pred HHHHHccCCCCeEEEcCCCchhHHHH----HHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCC
Q 013883 185 ATILGLINPGDEVILFAPFYDSYEAT----LSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFT 260 (434)
Q Consensus 185 ~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~ 260 (434)
+++. ++++||+|++++|.|+.+... ++..|++++.++.+ |++.+++++++++++|++++|+||||.+++
T Consensus 163 ~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~------d~~~l~~~i~~~tk~v~l~~p~NptG~v~~ 235 (464)
T 1ibj_A 163 AVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT------KLDEVAAAIGPQTKLVWLESPTNPRQQISD 235 (464)
T ss_dssp HHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT------SHHHHHHHCCSSEEEEEECSSCTTTCCCCC
T ss_pred HHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC------CHHHHHHHhccCceEEEEeCCCCCCCEeec
Confidence 8775 889999999999999998764 45689999998865 799999999989999999999999999995
Q ss_pred HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcc-ccceeeeEEeCh-hhHHHHHH
Q 013883 261 REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSL-TGWKIGWAIAPP-HLTWGVRQ 338 (434)
Q Consensus 261 ~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~-~G~R~G~~~~~~-~~~~~l~~ 338 (434)
+++|+++|++||+++|+||+|..... ...+ . .+.++++.|+||.++. .|+|+||+++++ ++++.+..
T Consensus 236 ---l~~i~~la~~~gi~livDea~~~g~~---~~~~-~----~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~ 304 (464)
T 1ibj_A 236 ---IRKISEMAHAQGALVLVDNSIMSPVL---SRPL-E----LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYF 304 (464)
T ss_dssp ---HHHHHHHHHTTTCEEEEECTTTCTTT---CCGG-G----TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCEEEEECCCccccc---CChh-h----cCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHH
Confidence 77899999999999999999975321 1111 1 2567999999999863 488999999985 78888877
Q ss_pred HhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH----------HhhhC-CCEeecCC----eeEEEeee
Q 013883 339 AHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVE----------GLNAV-GFKVFPSS----GTYFVVVD 403 (434)
Q Consensus 339 ~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~----------~L~~~-g~~~~~~~----~~~~~~~~ 403 (434)
.......+.+.+.++++..+|+.....++...+......+++.+ .|+++ ++.+.+++ ++ +++++
T Consensus 305 ~~~~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~-~~~~~ 383 (464)
T 1ibj_A 305 LQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS-VFSFI 383 (464)
T ss_dssp HHHHTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCS-EEEEE
T ss_pred HHHhcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCce-EEEEE
Confidence 76555667788888888888876433333332322323333322 23322 44444443 34 45555
Q ss_pred cCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 404 HTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 404 ~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+. +.+....++++| +..||.+.+|.
T Consensus 384 l~--~~~~~~~~~~~L-~~~gi~v~~G~ 408 (464)
T 1ibj_A 384 TG--SVALSKHLVETT-KYFSIAVSFGS 408 (464)
T ss_dssp CS--CHHHHHHHHHHC-SSSEECSCCCS
T ss_pred EC--CHHHHHHHHHhc-CcceEeecCCC
Confidence 52 211123466655 34699988885
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=238.79 Aligned_cols=290 Identities=14% Similarity=0.095 Sum_probs=213.4
Q ss_pred HHHHHHHHHHHH----cCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcE--EEcCChHHHHHHHHHHccCCC----
Q 013883 125 DFVKDAAIQAIR----DGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEV--TVTSGCTEAIAATILGLINPG---- 194 (434)
Q Consensus 125 ~~v~~~~~~~~~----~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i--~~t~G~~~ai~~~~~~l~~~g---- 194 (434)
+.+.+.+.+++. .....|....+..++++++++++.+.+|.+.+++ ++ ++++|+++++..+++++.++|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~-~v~~~~t~ggt~a~~~al~a~~~~g~~~~ 188 (514)
T 3mad_A 110 EHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGG-TVCGTVTSGGTESLLLAMKTYRDWARATK 188 (514)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTS-CCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccC-CcceEEcCcHHHHHHHHHHHHHHHhhhhc
Confidence 344444444443 2333444444667888999999998888766556 67 999999999999999998776
Q ss_pred ----CeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHH
Q 013883 195 ----DEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASL 270 (434)
Q Consensus 195 ----d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~l 270 (434)
|+|+++.|+|..+...+...|++++.+|+++ ++.+|++.|++++++++++|++++|+||||.+.+ +++|.++
T Consensus 189 g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l 264 (514)
T 3mad_A 189 GITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDA-DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDP---IPEIAAL 264 (514)
T ss_dssp CCSSCEEEEETTSCTHHHHHHHHHTCEEEEECBCT-TSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCC---HHHHHHH
T ss_pred CCCCCeEEEeCccchHHHHHHHHcCCeeEEeeeCC-CCCCCHHHHHHHhccCCEEEEEeCCCCCCccccC---HHHHHHH
Confidence 9999999999999999999999999999986 7889999999999999999999999999999986 6779999
Q ss_pred HHHcCcEEEEcCcCCccccC-----CC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhh---
Q 013883 271 CIENDVLVFSDEVYDKLAFE-----MD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHS--- 341 (434)
Q Consensus 271 a~~~~~~iI~Deay~~~~~~-----~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~--- 341 (434)
|++||+++|+||+|.++.+. +. ...+. . ...+..+++.|++|.++ +|.++|+++++.+..........
T Consensus 265 a~~~~i~livDea~~~~~~~~~~~~g~~~~~~~-~-~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~ 341 (514)
T 3mad_A 265 AAEHGIGCHVDACLGGFILPWAERLGYPVPPFD-F-RLEGVTSVSADTHKYGY-GAKGTSVILYRRPDLLHYQYFIAADW 341 (514)
T ss_dssp HHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCS-T-TSTTCCEEEECTTTTTC-CCSSCEEEEESSHHHHTTTCEEESSC
T ss_pred HHHhCCeEEEecccccccchhHHhcCCCCCccc-c-cCCCCcEEEECchhccC-CCCCeEEEEEeCHHHhcccccccccc
Confidence 99999999999999987642 11 01111 1 12345688899999865 77899999998765433211000
Q ss_pred -------c-cccCCchH---HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCC
Q 013883 342 -------F-LTFATSTP---MQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGH 409 (434)
Q Consensus 342 -------~-~~~~~~~~---~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~ 409 (434)
. ...+.+.. .+.++...+. .+++++..+++.++++++.+.|+++ |+.+..+..+ ++++... +
T Consensus 342 ~~~~~~~~~~~gs~~~~~~~a~~aal~~l~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~--~- 415 (514)
T 3mad_A 342 PGGLYFSPTFAGSRPGALSATAWAAMLSLG--EEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASD--E- 415 (514)
T ss_dssp TTCSEEESSSCSSCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS-EEEEECS--S-
T ss_pred CCCcccCCccCCCCchHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE-EEEEeCC--C-
Confidence 0 01122222 3333333343 4567888899999999999999987 8888776655 4455432 2
Q ss_pred CCHHHHHHHHHHhcCeEEECC
Q 013883 410 ETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 410 ~~~~~~~~~Ll~~~GV~v~pG 430 (434)
.+..++.++|.++ ||.+ +|
T Consensus 416 ~~~~~l~~~L~~~-Gi~v-~g 434 (514)
T 3mad_A 416 LNIYQVMEEMAGR-GWRL-NG 434 (514)
T ss_dssp SCHHHHHHHHHTT-TCBC-EE
T ss_pred CCHHHHHHHHHhc-CCEe-cc
Confidence 2577888888765 9987 44
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-27 Score=236.43 Aligned_cols=315 Identities=15% Similarity=0.107 Sum_probs=210.4
Q ss_pred CCeeEeCCC--CCCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQG--FPNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g--~p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...|||..| ...+. .+|.+.+++.+++.+. ..|....+..+++.++++.+.+..+.. ..+ +|++++|+++|+..
T Consensus 61 ~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~-~v~~~~sGseA~~~ 137 (451)
T 3oks_A 61 NRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDF-THTCFMVTPYEGYVAVCEQLNRLTPVR-GDK-RSALFNSGSEAVEN 137 (451)
T ss_dssp CEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTC-SCCTTTTSCCHHHHHHHHHHHHHSSCC-SSE-EEEEESSHHHHHHH
T ss_pred CEEEEcCCCccccccCCCCHHHHHHHHHHHHhc-ccccCCccCCHHHHHHHHHHHHhCCcC-CCC-EEEEeCcHHHHHHH
Confidence 357888876 22333 3788999999988764 346555566788888999888776532 235 79999999999999
Q ss_pred HHHHccC--CCCeEEEcCCCchhHHHHHHHcCC--------------EEEEEEcCCC--C--CCC--------CHHHHHh
Q 013883 186 TILGLIN--PGDEVILFAPFYDSYEATLSMAGA--------------KIKCITLRPP--D--FAI--------PIEELKS 237 (434)
Q Consensus 186 ~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~G~--------------~~~~v~~~~~--~--~~~--------d~~~l~~ 237 (434)
+++.+.. .++.|++.+++|+++......++. .+..+|+... + .+. +++.+++
T Consensus 138 Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 217 (451)
T 3oks_A 138 AVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAIT 217 (451)
T ss_dssp HHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHH
Confidence 9987653 458999999999987666554422 3455555410 0 011 2444444
Q ss_pred hc----ccCCcEEEecCCCCCcc-c-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEcc
Q 013883 238 TI----SKNTRAILMNTPHNPTG-K-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNS 311 (434)
Q Consensus 238 ~i----~~~~~~i~~~~p~NPTG-~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S 311 (434)
.+ ..+..+++++.|.|++| . .++.+.+++|.++|++||+++|+||+|.+|.+.+.......+...++ +.|
T Consensus 218 ~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd----i~t 293 (451)
T 3oks_A 218 VIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPD----LIV 293 (451)
T ss_dssp HHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS----EEE
T ss_pred HHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCC----eee
Confidence 44 33555666667766665 3 45677799999999999999999999999876655433333322222 348
Q ss_pred CChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCC-
Q 013883 312 LGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVG- 388 (434)
Q Consensus 312 ~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g- 388 (434)
|||.++ .|+|+||+++++++++.+.......+++.+++++.++.++|+.. ++++++.++..+..++.+.+.+.+.+
T Consensus 294 ~sK~l~-~G~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 372 (451)
T 3oks_A 294 TAKGIA-GGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDR 372 (451)
T ss_dssp ECGGGG-TTSSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ehhhhh-CCcceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999 59999999999999887766566678899999999999988742 22344444444444455555444443
Q ss_pred CEeecCCeeEEEeeecCCC-----CCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 389 FKVFPSSGTYFVVVDHTPF-----GHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+...++.|. ++++.+... ......++++.|+++ ||.+.|+..|
T Consensus 373 ~~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~ 420 (451)
T 3oks_A 373 IGDVRGRGA-MIAMELVKAGTTEPDADLTKALCAGAHAA-GVIVLSCGTY 420 (451)
T ss_dssp EEEEEEETT-EEEEEEBSTTSCCBCHHHHHHHHHHHHHT-TEECEEECTT
T ss_pred eEEEEEeeE-EEEEEEecCccCCCCHHHHHHHHHHHHhC-CcEEecCCCC
Confidence 344444455 445554220 111245677777765 9999997653
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-27 Score=234.63 Aligned_cols=303 Identities=16% Similarity=0.117 Sum_probs=203.4
Q ss_pred CCeeEeCCCCCC--CC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFPN--FD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p~--~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...|||..|.+. +. .+|.+.+++.+++.+.. .|.. ..+++.++++++.+.++ +++ +|++++|+++++..
T Consensus 52 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~---~~~~~~~la~~l~~~~~---~~~-~v~~~~ggsea~~~ 123 (427)
T 3fq8_A 52 NRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGT-SFGA---PCALENVLAEMVNDAVP---SIE-MVRFVNSGTEACMA 123 (427)
T ss_dssp CEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCS-CCSS---CCHHHHHHHHHHHHHST---TCS-EEEEESSHHHHHHH
T ss_pred CEEEECCCchhhhccCCCCHHHHHHHHHHHHhCC-CcCC---CCHHHHHHHHHHHHhCC---CCC-EEEEeCCHHHHHHH
Confidence 357899887532 33 48899999999887643 2332 24677778888877765 356 89999999999999
Q ss_pred HHHHcc--CCCCeEEEcCCCchhHHHHHHHc-C-------------------CEEEEEEcCCCCCCCCHHHHHhhccc--
Q 013883 186 TILGLI--NPGDEVILFAPFYDSYEATLSMA-G-------------------AKIKCITLRPPDFAIPIEELKSTISK-- 241 (434)
Q Consensus 186 ~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-G-------------------~~~~~v~~~~~~~~~d~~~l~~~i~~-- 241 (434)
+++... ..+++|++.+|+|+++...+... | ..+..+|++ |++.+++++++
T Consensus 124 al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~ 197 (427)
T 3fq8_A 124 VLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN------DLEAVKALFAENP 197 (427)
T ss_dssp HHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT------CHHHHHHHHHHST
T ss_pred HHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC------CHHHHHHHHHhCC
Confidence 985432 34578999999998643322111 1 123444433 79999999876
Q ss_pred -CCcEEEecCCCCCcccCCC-HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccc
Q 013883 242 -NTRAILMNTPHNPTGKMFT-REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLT 319 (434)
Q Consensus 242 -~~~~i~~~~p~NPTG~~~~-~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 319 (434)
++++|+++.++|++|.+.+ .+.+++|.++|++||+++|+||+|.+| +.+...........++ +.||||.++ +
T Consensus 198 ~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~d----i~t~sK~~~-~ 271 (427)
T 3fq8_A 198 GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPD----LTTLGKIIG-G 271 (427)
T ss_dssp TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCCCS----EEEECGGGG-T
T ss_pred CCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCCCCC----hhhhhhhhh-C
Confidence 5667777767778887665 555999999999999999999999988 5543322222211122 568999999 8
Q ss_pred cceeeeEEeChhhHHHHHHHh---hccccCCchHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecC
Q 013883 320 GWKIGWAIAPPHLTWGVRQAH---SFLTFATSTPMQWAATAALRA--PETYYEELKRDYSAKKAILVEGLNAVGFKVFPS 394 (434)
Q Consensus 320 G~R~G~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~a~~~~L~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 394 (434)
|+|+||+++++++++.+.... ...+++.+.+++.++.++|+. .+++.++.++..+..++.+.+.+.+.++....+
T Consensus 272 G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 351 (427)
T 3fq8_A 272 GLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGG 351 (427)
T ss_dssp TSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 999999999999987765432 234667788999888888863 233444444444444445544444455544444
Q ss_pred CeeEEEeeecCCCCCC-----------CHHHHHHHHHHhcCeEEECCCC
Q 013883 395 SGTYFVVVDHTPFGHE-----------TDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 395 ~~~~~~~~~~~~~~~~-----------~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
..++++++.+...... ...+++++|+++ ||.+.|+..
T Consensus 352 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gi~v~~~~~ 399 (427)
T 3fq8_A 352 QVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYLAPSQF 399 (427)
T ss_dssp EETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSSTT
T ss_pred EeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHC-CcEEecCCC
Confidence 4555667766432211 134677788765 999999863
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-27 Score=237.11 Aligned_cols=310 Identities=13% Similarity=0.063 Sum_probs=201.6
Q ss_pred CCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...|||..|. ..+. .+|.+.+++.+++.+.. .|....+..+.+.++++++.+..+. +.+ +|++++|+++|+..
T Consensus 44 ~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~~--~~~-~v~~~~sGseA~~~ 119 (448)
T 3dod_A 44 KEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIA-HSTLLGMTNVPATQLAETLIDISPK--KLT-RVFYSDSGAEAMEI 119 (448)
T ss_dssp CEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCS-CCCCSSSEEHHHHHHHHHHHHHSCT--TEE-EEEEESSHHHHHHH
T ss_pred CEEEECCcchhhccCCCCCHHHHHHHHHHHHhcc-CccccccCCHHHHHHHHHHHHhCCC--CCC-EEEEeCchHHHHHH
Confidence 3578887762 2222 37889999999887642 3444456668888899988877653 345 89999999999999
Q ss_pred HHHHccC----CC----CeEEEcCCCchhHHHHHHHcCC-------------EEEEEEcCCCCCCC-----------CHH
Q 013883 186 TILGLIN----PG----DEVILFAPFYDSYEATLSMAGA-------------KIKCITLRPPDFAI-----------PIE 233 (434)
Q Consensus 186 ~~~~l~~----~g----d~Vlv~~p~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~-----------d~~ 233 (434)
+++.+.. +| |+|++.+|+|+++......++. .+..++... .+.. |++
T Consensus 120 al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~ 198 (448)
T 3dod_A 120 ALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPY-VYRSESGDPDECRDQCLR 198 (448)
T ss_dssp HHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCC-CTTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCc-cccCCccchhhhhHHHHH
Confidence 9998865 44 9999999999987655443332 123333321 2222 488
Q ss_pred HHHhhcc---cCCcEEEecCCC-CCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEE
Q 013883 234 ELKSTIS---KNTRAILMNTPH-NPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVT 308 (434)
Q Consensus 234 ~l~~~i~---~~~~~i~~~~p~-NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~ 308 (434)
.|+++++ +++++|+++.++ |++|. +++.+.+++|.++|++||+++|+||+|.+|.+.+.......+...++
T Consensus 199 ~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~d---- 274 (448)
T 3dod_A 199 ELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPD---- 274 (448)
T ss_dssp HHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS----
T ss_pred HHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCC----
Confidence 8999886 345566666556 88885 56788899999999999999999999999876654433332222222
Q ss_pred EccCChhhccccc-eeeeEEeChhhHHHHHH-------HhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHH
Q 013883 309 MNSLGKTFSLTGW-KIGWAIAPPHLTWGVRQ-------AHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKA 378 (434)
Q Consensus 309 i~S~SK~~g~~G~-R~G~~~~~~~~~~~l~~-------~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~ 378 (434)
+.+|||.++ .|+ |+||+++++++++.+.. .....+++.+++++.++.++|+.. +++++++++..+..++
T Consensus 275 i~t~sK~l~-~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~ 353 (448)
T 3dod_A 275 LMAAGKGIT-GGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHF 353 (448)
T ss_dssp EEEECGGGG-TTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred EEEeccccc-CCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 447899998 695 99999999999887765 334457888999999999988742 2344555555555555
Q ss_pred HHHHHhhhCCC-EeecCCeeEEEeeecCCCCCC---------CHHHHHHHHHHhcCeEEECCC
Q 013883 379 ILVEGLNAVGF-KVFPSSGTYFVVVDHTPFGHE---------TDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 379 ~l~~~L~~~g~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
.+.+ +.+.+. ....+.|. ++|+.+...... ...++++.|+++ ||.+.|+.
T Consensus 354 ~l~~-l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~ 413 (448)
T 3dod_A 354 LLQD-LHALPHVGDIRQLGF-MCGAELVRSKETKEPYPADRRIGYKVSLKMREL-GMLTRPLG 413 (448)
T ss_dssp HHHH-HTTSTTEEEEEEETT-EEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECCEET
T ss_pred HHHH-HhcCCCeEEEEeeeE-EEEEEEccCcccccccchhhHHHHHHHHHHHHC-CcEEeccC
Confidence 5655 555443 33334444 556655331100 036788888765 99999864
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=236.82 Aligned_cols=304 Identities=16% Similarity=0.138 Sum_probs=200.9
Q ss_pred CCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...+||..|.. .+. .+|.+.+++.+++.+....|.+.....+|++++++++. +++ +|++++|+++++..
T Consensus 53 ~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-------~~~-~v~~~~~Gsea~~~ 124 (429)
T 3k28_A 53 NEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVP-------SIE-IVRMVNSGTEATMS 124 (429)
T ss_dssp CEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHHST-------TCS-EEEEESSHHHHHHH
T ss_pred CEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCcCCCCHHHHHHHHHHHHhCC-------CCC-EEEEeCChHHHHHH
Confidence 36799987742 333 47899999999887754333333344566666666542 255 89999999999999
Q ss_pred HHHHccC--CCCeEEEcCCCchhHHHHHHH-cCCEEEEEEcCCCCCC-------------CCHHHHHhhccc---CCcEE
Q 013883 186 TILGLIN--PGDEVILFAPFYDSYEATLSM-AGAKIKCITLRPPDFA-------------IPIEELKSTISK---NTRAI 246 (434)
Q Consensus 186 ~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~-~G~~~~~v~~~~~~~~-------------~d~~~l~~~i~~---~~~~i 246 (434)
+++.+.. +++.|++.+|+|+++...... .|..+..++.....+. -|++.++++++. ++++|
T Consensus 125 ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~v 204 (429)
T 3k28_A 125 ALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACV 204 (429)
T ss_dssp HHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEE
T ss_pred HHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEE
Confidence 9987754 678999999999865433221 2221111111110110 178999998873 45556
Q ss_pred EecCCCCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeee
Q 013883 247 LMNTPHNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGW 325 (434)
Q Consensus 247 ~~~~p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~ 325 (434)
+++.++|++|.+. +.+.+++|.++|++||+++|+||+|.+| +.+.......+...++ +.+|||.+| .|+|+||
T Consensus 205 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~d----i~t~sK~~~-~G~~iG~ 278 (429)
T 3k28_A 205 IVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPD----LTCLGKVIG-GGLPVGA 278 (429)
T ss_dssp EECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCS----EEEECGGGG-TTSCCEE
T ss_pred EEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCc----eehhhhhhc-CCCCeEE
Confidence 6655566666655 6778999999999999999999999988 5543322222211112 457999998 6999999
Q ss_pred EEeChhhHHHHHHHh---hccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC----CC-EeecCCee
Q 013883 326 AIAPPHLTWGVRQAH---SFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV----GF-KVFPSSGT 397 (434)
Q Consensus 326 ~~~~~~~~~~l~~~~---~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~-~~~~~~~~ 397 (434)
+++++++++.+.... ...+++.+++++.++.++|+..+ ++++++++++++.+++.|+++ +. ...++.|.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~ 355 (429)
T 3k28_A 279 YGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT---PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGS 355 (429)
T ss_dssp EEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETT
T ss_pred EEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeecc
Confidence 999999887765422 23467889999999999999754 456667777777777776653 32 34455566
Q ss_pred EEEeeecCCCCCC-----------CHHHHHHHHHHhcCeEEECCC
Q 013883 398 YFVVVDHTPFGHE-----------TDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 398 ~~~~~~~~~~~~~-----------~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
|+.| .+...... ...+++++|+++ ||.+.||.
T Consensus 356 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~ 398 (429)
T 3k28_A 356 MIGI-FFTDEPVINYDAAKSSNLQFFAAYYREMVEQ-GVFLPPSQ 398 (429)
T ss_dssp EEEE-ESSSSCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSST
T ss_pred EEEE-EEecCCcccccccccccHHHHHHHHHHHHHC-CeEEecCC
Confidence 5544 33221110 135677888765 99999963
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-28 Score=235.83 Aligned_cols=295 Identities=12% Similarity=0.090 Sum_probs=205.8
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcC----CCCCCC---CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCCh-HH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDG----KNQYAR---GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGC-TE 181 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~----~~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~-~~ 181 (434)
..+++..|.+ ++|+.+++++.+.+.+. ...|.. ..+..++.+++.+.+.+.+|.. +++ +|++++|+ ++
T Consensus 3 ~~~~~~~g~~--~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~-~v~~~~g~gt~ 78 (360)
T 1w23_A 3 QVFNFNAGPS--ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIP-NDY-QILFLQGGASL 78 (360)
T ss_dssp CCEECCSSSC--CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-TTE-EEEEESSHHHH
T ss_pred ceEeecCCCc--CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCc-eEEEECCcchH
Confidence 3567777743 66788888888876531 111212 2233445566666666666653 345 89999999 99
Q ss_pred HHHHHHHHccCC---CCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHh-hcccCCcEEEecCCCCCccc
Q 013883 182 AIAATILGLINP---GDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKS-TISKNTRAILMNTPHNPTGK 257 (434)
Q Consensus 182 ai~~~~~~l~~~---gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~-~i~~~~~~i~~~~p~NPTG~ 257 (434)
++.+++.+++.+ ||.|+++.++|.. ...+...| +++.++++++++.+|++++++ ++++++++|++++|+||||.
T Consensus 79 al~~~~~~l~~~~~~g~~vi~~~~~~~~-~~~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~ 156 (360)
T 1w23_A 79 QFTMLPMNLLTKGTIGNYVLTGSWSEKA-LKEAKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGT 156 (360)
T ss_dssp HHHHHHHHHCCTTCEEEEEECSHHHHHH-HHHHHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTE
T ss_pred HHHHHHHHhcCCCCcccEEEecchhHHH-HHHHHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcce
Confidence 999999998865 5667777666654 34467789 999999875344589999999 88889999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHH
Q 013883 258 MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVR 337 (434)
Q Consensus 258 ~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~ 337 (434)
+++ + | +++||+++|+||+|..+... ..+..+ .+++.|+||.+|++| +||++++++++++++
T Consensus 157 ~~~--~---i---~~~~~~~li~D~a~~~~~~~---~~~~~~------di~~~s~sK~~~~~G--~G~~~~~~~~~~~~~ 217 (360)
T 1w23_A 157 QYQ--N---F---PEINHAPLIADMSSDILSRP---LKVNQF------GMIYAGAQKNLGPSG--VTVVIVKKDLLNTKV 217 (360)
T ss_dssp ECS--S---C---CCCCSSCEEEECTTTTTSSC---CCGGGC------SEEEEETTTTTSCTT--CEEEEEEHHHHCSCC
T ss_pred ecc--c---c---cccCCceEEEechhhcCCCC---cCcccC------CEEEEEcccccCCCC--cEEEEEcHHHHhhcc
Confidence 987 3 2 33899999999999875321 122211 378999999999666 999999988775543
Q ss_pred HHh------------hccccCCchHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHHHhhhCC-C-Eee-cC--CeeE
Q 013883 338 QAH------------SFLTFATSTPMQWAATAALRAPET--YYEELKRDYSAKKAILVEGLNAVG-F-KVF-PS--SGTY 398 (434)
Q Consensus 338 ~~~------------~~~~~~~~~~~q~a~~~~L~~~~~--~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~-~~--~~~~ 398 (434)
... .....+++...+.++..+|+...+ ++++++++++++++.+.+.|++++ + ... .+ .+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 297 (360)
T 1w23_A 218 EQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLM 297 (360)
T ss_dssp TTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSS
T ss_pred cCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCc
Confidence 321 111234455666666667764322 578889999999999999999875 5 543 12 3566
Q ss_pred EEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 399 FVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
++|+.++.. .+..++.++|. ++||.+.||..
T Consensus 298 ~~~~~~~~~--~~~~~~~~~l~-~~gi~~~~~~~ 328 (360)
T 1w23_A 298 NVTFNLRNE--ELNQQFLAKAK-EQGFVGLNGHR 328 (360)
T ss_dssp EEEEECSSH--HHHHHHHHHHH-HTTEESCBCCT
T ss_pred EEEEEcCCC--ccHHHHHHHHH-HCCeeeecCCC
Confidence 778876421 12456777764 46999999864
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=230.45 Aligned_cols=291 Identities=18% Similarity=0.166 Sum_probs=203.7
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC----CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYAR----GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~----~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
+.+.|+.+.++ +.++.+.+++.+++.+....+.. ..|..+..+.+.+.+.+.+|. +++ +|++++|+++++..
T Consensus 28 ~~~yld~~~~~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~~-~v~~~~g~t~al~~ 103 (416)
T 1qz9_A 28 GVIYLDGNSLG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGA--RDG-EVVVTDTTSINLFK 103 (416)
T ss_dssp TCEECCTTTSC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTC--CTT-SEEECSCHHHHHHH
T ss_pred CeEeecCCCcC-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCC--Ccc-cEEEeCChhHHHHH
Confidence 67888887665 56778888998888753211110 012223333344444444443 456 79999999999998
Q ss_pred HHHHcc------CCCCeEE-EcCCCchhHHHHH----HHc--CCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCC
Q 013883 186 TILGLI------NPGDEVI-LFAPFYDSYEATL----SMA--GAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPH 252 (434)
Q Consensus 186 ~~~~l~------~~gd~Vl-v~~p~y~~~~~~~----~~~--G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~ 252 (434)
++.+++ ++||+|+ +..+.|+.+...+ ... |++++.++. ++.+++++++++++|++++|+
T Consensus 104 al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~~~l~~~i~~~~~~v~~~~~~ 175 (416)
T 1qz9_A 104 VLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS--------PEELPQAIDQDTAVVMLTHVN 175 (416)
T ss_dssp HHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS--------GGGHHHHCSTTEEEEEEESBC
T ss_pred HHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc--------HHHHHHHhCCCceEEEEeccc
Confidence 888876 8999754 5556887655433 223 999988875 688999998889999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccccee-eeEEeChh
Q 013883 253 NPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKI-GWAIAPPH 331 (434)
Q Consensus 253 NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~-G~~~~~~~ 331 (434)
||||.+++ +++|.++|++||+++|+||+|.... ....+..+ +..+++.|++|.++ +|+++ ||++++++
T Consensus 176 nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~---~~~~~~~~----~~d~~~~s~~K~l~-~g~~~~g~l~~~~~ 244 (416)
T 1qz9_A 176 YKTGYMHD---MQALTALSHECGALAIWDLAHSAGA---VPVDLHQA----GADYAIGCTYKYLN-GGPGSQAFVWVSPQ 244 (416)
T ss_dssp TTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTT---SCCCHHHH----TCSEEEECSSSTTC-CCTTCCCEEEECTT
T ss_pred cCcccccC---HHHHHHHHHHcCCEEEEEccccccC---cCCChhhc----CCCEEEecCcccCC-CCCCCeEEEEECHH
Confidence 99999997 6779999999999999999997421 11111111 23588899999986 78888 99999988
Q ss_pred hHHHHHHHh-----------------------hccccCCchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhC
Q 013883 332 LTWGVRQAH-----------------------SFLTFATSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 332 ~~~~l~~~~-----------------------~~~~~~~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (434)
+++.++... .....+.+...+.++..+|+.. ++++++++++++++++.+.+.|++.
T Consensus 245 ~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 324 (416)
T 1qz9_A 245 LCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQR 324 (416)
T ss_dssp TTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 866554321 1112345666666666666642 2357788899999999999999886
Q ss_pred ----CCEeecCC----eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 388 ----GFKVFPSS----GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 388 ----g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
|+.+..+. .+.++++.+. +..+++++|.+ +||.+.+
T Consensus 325 ~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~-~gi~~~~ 368 (416)
T 1qz9_A 325 CAAHELTLVTPREHAKRGSHVSFEHP-----EGYAVIQALID-RGVIGDY 368 (416)
T ss_dssp HTTSCCEECSCSSGGGBCSEEEEECT-----THHHHHHHHHT-TTEECEE
T ss_pred ccCCCeEEeCCCCHHHcCCEEEEecC-----CHHHHHHHHHh-CCcEecc
Confidence 88887663 2345677763 26678888865 5998754
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-26 Score=228.00 Aligned_cols=299 Identities=14% Similarity=0.121 Sum_probs=191.5
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCC-CCCC-----CCCCcHHHHHHHH-HHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGK-NQYA-----RGHGVPEFNSAIA-SRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~-~~Y~-----~~~G~~~lr~~ia-~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+.++|..+... .++.+.+++.+++.+.. ..|+ +.....++.+.++ +.+.+..|. +...++++|++++
T Consensus 33 ~~i~l~~~~~~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~v~~~~Gs~a 106 (425)
T 3ecd_A 33 SQVELIASENI--VSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNA----GHANVQPHSGAQA 106 (425)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTC----SEEECCCSSHHHH
T ss_pred cceeeecccCC--CCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCC----CCceeecCchHHH
Confidence 45777655432 27888888887774321 1221 1111112333333 555555553 2123458888999
Q ss_pred HHHHHHHccCCCCeEEEcCCCchh---HHHHHHHcCC--EEEEEEcCCCCCCCCHHHHHhhcc-cCCcEEEecCCCCCcc
Q 013883 183 IAATILGLINPGDEVILFAPFYDS---YEATLSMAGA--KIKCITLRPPDFAIPIEELKSTIS-KNTRAILMNTPHNPTG 256 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~---~~~~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~-~~~~~i~~~~p~NPTG 256 (434)
+..++.+++++||+|++++|+|++ +.......|. +++.++.+++++.+|++.++++++ .++++|++++|+||+.
T Consensus 107 ~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~~ 186 (425)
T 3ecd_A 107 NGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYPRK 186 (425)
T ss_dssp HHHHHHHHCCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCCCSC
T ss_pred HHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccCCCc
Confidence 999999999999999999999988 3333334455 555666665568999999999997 5899999999999753
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcCcCC-ccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC-hhhHH
Q 013883 257 KMFTREELNVIASLCIENDVLVFSDEVYD-KLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTW 334 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~~~~iI~Deay~-~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~ 334 (434)
. ++++|.++|++||+++|+||+|. ++.+.+....... ...+++.|+||.+ +|+|+||++++ +++.+
T Consensus 187 --~---~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-----~~di~~~s~sK~l--~g~~~g~~~~~~~~~~~ 254 (425)
T 3ecd_A 187 --L---DFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-----HAHVVTSTTHKTL--RGPRGGFVLTNDEEIAK 254 (425)
T ss_dssp --C---CHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-----TCSEEEEESSGGG--CCCSCEEEEESCHHHHH
T ss_pred --C---CHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh-----cCcEEEecCCccc--CCCCcEEEEeCCHHHHH
Confidence 2 46789999999999999999954 4444433222111 1238899999988 57899999998 56766
Q ss_pred HHHHHhhcccc-CCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecC-CeeEEEeeecCCCCCCC
Q 013883 335 GVRQAHSFLTF-ATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFPS-SGTYFVVVDHTPFGHET 411 (434)
Q Consensus 335 ~l~~~~~~~~~-~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~~ 411 (434)
.+......... +++...+.++..++.. .++++++.+++++++++.+.+.|++.|+.+.++ .+++++|+.+.+.+. +
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~ 333 (425)
T 3ecd_A 255 KINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGGTDNHLLLVDLRPKGL-K 333 (425)
T ss_dssp HHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTC-C
T ss_pred HHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCCceEEEEEeCCCCC-C
Confidence 66654433222 3344444444444443 345678889999999999999999999988754 456677777654332 3
Q ss_pred HHHHHHHHHHhcCeEEE
Q 013883 412 DIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 412 ~~~~~~~Ll~~~GV~v~ 428 (434)
...+.+.| +++||.+.
T Consensus 334 ~~~~~~~l-~~~gi~v~ 349 (425)
T 3ecd_A 334 GAQVEQAL-ERAGITCN 349 (425)
T ss_dssp HHHHHHHH-HHTTEECE
T ss_pred HHHHHHHH-HHcCCEec
Confidence 55555555 66799999
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-27 Score=236.35 Aligned_cols=295 Identities=17% Similarity=0.079 Sum_probs=193.6
Q ss_pred CeeEeCCCCCC--CC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 110 GAINLGQGFPN--FD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 110 ~~i~l~~g~p~--~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
..|||+.|.+. +. .++.+.+++.+++.... .| .+..++++++++++.+.++ +++ +|++++|+++|+..+
T Consensus 58 ~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~-~~---~~~~~~~~~la~~l~~~~~---~~~-~v~~~~gg~eA~~~a 129 (453)
T 2cy8_A 58 VYLDFFGGHGALVLGHGHPRVNAAIAEALSHGV-QY---AASHPLEVRWAERIVAAFP---SIR-KLRFTGSGTETTLLA 129 (453)
T ss_dssp EEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTC-SS---CSSCHHHHHHHHHHHHHCT---TCS-EEEEESCHHHHHHHH
T ss_pred EEEECcccHhhcccCCCCHHHHHHHHHHHHhCC-CC---CCCCHHHHHHHHHHHhhCC---CCC-EEEEeCCHHHHHHHH
Confidence 57899888532 22 67889999999887642 23 2356899999999988764 456 899999999999999
Q ss_pred HHH---ccCCCCeEEEcCCCchhHHHHHHH-----------cCCE------EEEEEcCCCCCCCCHHHHHhhccc---CC
Q 013883 187 ILG---LINPGDEVILFAPFYDSYEATLSM-----------AGAK------IKCITLRPPDFAIPIEELKSTISK---NT 243 (434)
Q Consensus 187 ~~~---l~~~gd~Vlv~~p~y~~~~~~~~~-----------~G~~------~~~v~~~~~~~~~d~~~l~~~i~~---~~ 243 (434)
++. +.++ +.|++.+|+|+++...+.. .|.+ +..+++ .|++.+++++++ ++
T Consensus 130 l~~ar~~~~~-~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~ 202 (453)
T 2cy8_A 130 LRVARAFTGR-RMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP------DDIEGMREVFANHGSDI 202 (453)
T ss_dssp HHHHHHHHCC-CEEEEECC----------------------------CGGGEEEECT------TCHHHHHHHHHHHGGGE
T ss_pred HHHHHHhhCC-CEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC------CCHHHHHHHHHhcCCCE
Confidence 887 5554 6888889999976553322 1221 223322 389999998873 55
Q ss_pred cEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccce
Q 013883 244 RAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWK 322 (434)
Q Consensus 244 ~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R 322 (434)
++|+++..+||||.+ .+.+++++|.++|++||+++|+||+|.++ +.+.......+...++ +.||||.++ +|+|
T Consensus 203 ~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~d----i~s~sK~l~-~G~~ 276 (453)
T 2cy8_A 203 AAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPD----LTCLAKASA-GGLP 276 (453)
T ss_dssp EEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTCCCS----EEEEEGGGG-TTSS
T ss_pred EEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhhhHHhCCCCc----EEEEChhhh-CCcc
Confidence 666554446779975 47999999999999999999999999987 4443222211111122 348999999 6999
Q ss_pred eeeEEeChhhHHHHHH-----HhhccccCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhC----CCEe-
Q 013883 323 IGWAIAPPHLTWGVRQ-----AHSFLTFATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAV----GFKV- 391 (434)
Q Consensus 323 ~G~~~~~~~~~~~l~~-----~~~~~~~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~- 391 (434)
+||+++++++++.+.. .....+++.+++.+.++.++|+. . .+++.++++++++.+++.|+++ ++..
T Consensus 277 ~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 353 (453)
T 2cy8_A 277 GGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL---EDDVCAKINDLGQFAREAMNHLFARKGLNWL 353 (453)
T ss_dssp CEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence 9999999988876643 11234677888888888888874 2 1334556666666666666543 5433
Q ss_pred ecCCeeEEEeeecCC-----C------------CCCCHHHHHHHHHHhcCeEEECC
Q 013883 392 FPSSGTYFVVVDHTP-----F------------GHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 392 ~~~~~~~~~~~~~~~-----~------------~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
.++.|. ++|+.+.. . ......+++++|++ +||.+.|+
T Consensus 354 ~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gv~v~~~ 407 (453)
T 2cy8_A 354 AYGRFS-GFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALIL-EGVDIGGR 407 (453)
T ss_dssp EECCTT-EEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH-TTEECBTT
T ss_pred EEEeee-EEEEEEeccccccccccccccccccccHHHHHHHHHHHHH-CCeEEeCC
Confidence 455555 56777642 1 00124578888876 49999775
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=233.74 Aligned_cols=302 Identities=19% Similarity=0.184 Sum_probs=217.9
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC---CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYAR---GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
..+.|+ +... ...+.+.+++.+.+ ...+.|.+ ..|..++++++++++.+.+|.+ . .+++++|+++++..+
T Consensus 67 ~~~~lg-~~~~-~~~p~v~~~~~~~~-~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~---~-~~~~~~ggt~a~~~a 139 (474)
T 1wyu_B 67 TFYPLG-SCTM-KYNPKLHEEAARLF-ADLHPYQDPRTAQGALRLMWELGEYLKALTGMD---A-ITLEPAAGAHGELTG 139 (474)
T ss_dssp SCCCBT-TTCC-CCCCHHHHHHHHTT-SSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCS---E-EECCCSSHHHHHHHH
T ss_pred Cccccc-cccc-cCCHHHHHHHHHHH-HhcCCCCchhhChHHHHHHHHHHHHHHHHHCCC---c-eeecChHHHHHHHHH
Confidence 356777 5322 22334444444432 12234443 5577789999999999888863 2 467889999999876
Q ss_pred HHHc----cCCCC-----eEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCccc
Q 013883 187 ILGL----INPGD-----EVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGK 257 (434)
Q Consensus 187 ~~~l----~~~gd-----~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~ 257 (434)
+.++ .++|| +|+++.|.|+.+...+...|++++.++.++ ++.+|++.|++++++++++|++++| ||||.
T Consensus 140 l~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~-~~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~ 217 (474)
T 1wyu_B 140 ILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP-EGEVDLEALKRELGPHVAALMLTNP-NTLGL 217 (474)
T ss_dssp HHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT-TSSBCHHHHHHHCSTTEEEEEECSS-CTTSC
T ss_pred HHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCC-CCCcCHHHHHHhhCCCceEEEEECC-CCCcc
Confidence 5554 35887 999999999999999999999999999874 6889999999999989999999998 68998
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccc-c---ceeeeEEeChhhH
Q 013883 258 MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLT-G---WKIGWAIAPPHLT 333 (434)
Q Consensus 258 ~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~-G---~R~G~~~~~~~~~ 333 (434)
+. +++++|+++|++||+++|+|++|..+.++. ..... .+..+++.|++|.|+.+ | +|+||++++++++
T Consensus 218 ~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g~--~~~~~----~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~ 289 (474)
T 1wyu_B 218 FE--RRILEISRLCKEAGVQLYYDGANLNAIMGW--ARPGD----MGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLA 289 (474)
T ss_dssp CC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTTT--CCHHH----HTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGG
T ss_pred cC--CCHHHHHHHHHHcCCEEEEeCchhhhhccC--CCccc----CCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHH
Confidence 73 368889999999999999999997665421 11111 13568889999999766 4 5999999999887
Q ss_pred HHHHH-H------------------hhccccCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeec
Q 013883 334 WGVRQ-A------------------HSFLTFATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFP 393 (434)
Q Consensus 334 ~~l~~-~------------------~~~~~~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 393 (434)
+.+.. . .+...++.+...+.++..+|.. ..++++++.+++.++++++.+.|++.|+++..
T Consensus 290 ~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~ 369 (474)
T 1wyu_B 290 PYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPY 369 (474)
T ss_dssp GGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSS
T ss_pred HhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEecC
Confidence 65531 0 0112234566677777777764 35678888999999999999999988887743
Q ss_pred CCeeEE-EeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 394 SSGTYF-VVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 394 ~~~~~~-~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
+...+. .++++ +.+. +..+++++|+++ ||.+ |+..
T Consensus 370 ~~~~~~~~~~~~-~~~~-~~~~l~~~L~~~-Gi~~-~~~~ 405 (474)
T 1wyu_B 370 DGPSMHEFVAQP-PEGF-RALDLAKGLLEL-GFHP-PTVY 405 (474)
T ss_dssp CSSCCSCEEEBC-STTC-CHHHHHHHHHHT-TCCC-CEES
T ss_pred CCCcceEEEEEc-CCCC-CHHHHHHHHHHC-Cccc-cccc
Confidence 332221 34554 2232 577899999876 9974 5443
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=227.12 Aligned_cols=301 Identities=13% Similarity=0.110 Sum_probs=207.0
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcC-CCCCCC------CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDG-KNQYAR------GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-~~~Y~~------~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
..++++.+.|. ++.+.+++.+++.+. ...|+. .....++++.+.+.+.+.+|. +++ .|++++| +++
T Consensus 25 ~~~~~~~~~~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~--~~~-~i~~~sG-t~a 97 (405)
T 2vi8_A 25 KIELIASENFV---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGA--EHA-NVQPHSG-AQA 97 (405)
T ss_dssp SEECCTTCCCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEE-ECCCSSH-HHH
T ss_pred ceeeccCcccC---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCC--Cce-EEEecCc-HHH
Confidence 56666554332 788888888877532 122221 112345554344444444443 233 4445666 999
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHHH-H--HHHc--CCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcc
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYEA-T--LSMA--GAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTG 256 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~~-~--~~~~--G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG 256 (434)
+..++.+++++||+|++++|+|+.+.. . +... +.+++.++++++++.+|++.+++++++ ++++|++ +|+|. |
T Consensus 98 ~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~-~~~~~-~ 175 (405)
T 2vi8_A 98 NMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVA-AAAAY-P 175 (405)
T ss_dssp HHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSC-C
T ss_pred HHHHHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEE-eCCCC-C
Confidence 999999999999999999999987743 1 1223 347888877655788999999999986 8888877 55554 4
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhc-cccceeeeEEeChhhHHH
Q 013883 257 KMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIAPPHLTWG 335 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~~~~~~~~ 335 (434)
... ++++|.++|++||+++|+||+|.......+... ..+ . ...+++.|+||.++ ..| ||+++++++++.
T Consensus 176 ~~~---~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~-~~~-~--~~di~~~s~sK~~~g~~g---G~~~~~~~~~~~ 245 (405)
T 2vi8_A 176 RII---DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHP-NPV-P--YAHFVTTTTHKTLRGPRG---GMILCQEQFAKQ 245 (405)
T ss_dssp SCC---CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC-CST-T--TCSEEEEESSSTTCCCSC---EEEEECHHHHHH
T ss_pred ccC---CHHHHHHHHHHcCCEEEEEccccccccccCcCC-Ccc-c--cCCEEEEeccccCCCCCC---eEEEEcHHHHHH
Confidence 443 378899999999999999999995333221111 111 1 22388999999997 555 999999999888
Q ss_pred HHHHhhccccCCchHHHH-HHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecC-CeeEEEeeecCCCCCCCH
Q 013883 336 VRQAHSFLTFATSTPMQW-AATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFKVFPS-SGTYFVVVDHTPFGHETD 412 (434)
Q Consensus 336 l~~~~~~~~~~~~~~~q~-a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~~~ 412 (434)
++.......++.+.+.+. ++..+|+.. .+++++++++++++++.+.+.|+++|+++..+ .+++++|+.+...+. +.
T Consensus 246 l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~ 324 (405)
T 2vi8_A 246 IDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQL-TG 324 (405)
T ss_dssp HHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTC-CH
T ss_pred HHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEecCCCCceEEEEEccCCCC-CH
Confidence 877654444454444444 444566642 35788899999999999999999999988764 456788888753332 46
Q ss_pred HHHHHHHHHhcCeEEECCC
Q 013883 413 IAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 413 ~~~~~~Ll~~~GV~v~pG~ 431 (434)
.++.+.| .++||.+.||.
T Consensus 325 ~~~~~~l-~~~gi~v~~g~ 342 (405)
T 2vi8_A 325 KTAEKVL-DEVGITVNKNT 342 (405)
T ss_dssp HHHHHHH-HHHTEECEEEC
T ss_pred HHHHHHH-HHcCceeccCc
Confidence 6777777 45699999985
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=234.78 Aligned_cols=307 Identities=15% Similarity=0.107 Sum_probs=207.0
Q ss_pred CeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCC-CCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 110 GAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARG-HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 110 ~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~-~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
..+||..|. ..+. .++.+.+++.+++.+.. +... .+..++++++++.+.+..+. +++ +|++++|+++++..
T Consensus 51 ~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~la~~~~~--~~~-~v~~~~ggsea~~~ 125 (449)
T 3a8u_X 51 KVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD--YSPGFQYGHPLSFQLAEKITDLTPG--NLN-HVFFTDSGSECALT 125 (449)
T ss_dssp EEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS--CCCSSSCCCHHHHHHHHHHHTTSST--TEE-EEEEESSHHHHHHH
T ss_pred EEEECCccHhhccCCCCCHHHHHHHHHHHHhCC--CccccccCCHHHHHHHHHHHHhCCC--CCC-EEEEcCcHHHHHHH
Confidence 467886553 2232 27889999988876532 2222 34456777788877766543 456 89999999999999
Q ss_pred HHHHccC--------CCCeEEEcCCCchhHH-HHHHHcCC------------EEEEEEcCC--C-C-CCCC--------H
Q 013883 186 TILGLIN--------PGDEVILFAPFYDSYE-ATLSMAGA------------KIKCITLRP--P-D-FAIP--------I 232 (434)
Q Consensus 186 ~~~~l~~--------~gd~Vlv~~p~y~~~~-~~~~~~G~------------~~~~v~~~~--~-~-~~~d--------~ 232 (434)
+++.+.. +||+|++.+|+|+++. ..+...|. .+..++.+. . + .++| +
T Consensus 126 al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~ 205 (449)
T 3a8u_X 126 AVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALA 205 (449)
T ss_dssp HHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHH
Confidence 9988764 6799999999998764 34444432 244444321 1 1 1356 9
Q ss_pred HHHHhhcc----cCCcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceE
Q 013883 233 EELKSTIS----KNTRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTV 307 (434)
Q Consensus 233 ~~l~~~i~----~~~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i 307 (434)
+.|+++++ +++++|+++..+|+||. ..+.+.+++|.++|++||+++|+||+|.+|.+.+....+..+...++
T Consensus 206 ~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d--- 282 (449)
T 3a8u_X 206 DELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPD--- 282 (449)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCS---
T ss_pred HHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCC---
Confidence 99999987 34555554433578997 56788999999999999999999999988765443222222211122
Q ss_pred EEccCChhhcccc-ceeeeEEeChhhHHHHHHH---------hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 013883 308 TMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQA---------HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKK 377 (434)
Q Consensus 308 ~i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~~---------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~ 377 (434)
+.||||.++ +| +|+||+++++++++.+... ....+++.+.+++.++.++|+..++ +++.+++++++
T Consensus 283 -i~s~sK~l~-~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~--~~~~~~~~~~~ 358 (449)
T 3a8u_X 283 -LMCIAKQVT-NGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQK--ENLVQSVAEVA 358 (449)
T ss_dssp -EEEECGGGG-TTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHH
T ss_pred -EEEEccccc-CCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHh--cCHHHHHHHHH
Confidence 238999998 68 9999999999988877653 1224667788888888888874322 24566777788
Q ss_pred HHHHHHhhhCC-CE---eecCCeeEEEeeecCCCCCC---CHHHHHHHHHHhcCeEEECC
Q 013883 378 AILVEGLNAVG-FK---VFPSSGTYFVVVDHTPFGHE---TDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 378 ~~l~~~L~~~g-~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Ll~~~GV~v~pG 430 (434)
+.+++.|++++ +. ..++ .+.++|+++...... +..+++++|+++ ||.+.||
T Consensus 359 ~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~ 416 (449)
T 3a8u_X 359 PHFEKALHGIKGAKNVIDIRN-FGLAGAIQIAPRDGDAIVRPFEAGMALWKA-GFYVRFG 416 (449)
T ss_dssp HHHHHHHHTTTTSTTEEEEEE-ETTEEEEEECCBTTBSSHHHHHHHHHHHHH-TEECEEE
T ss_pred HHHHHHHHHHhcCCCeEEEee-eEEEEEEEEecCcccccccHHHHHHHHHHC-CcEEecC
Confidence 88888887642 32 2233 445677777532111 123688888765 9999986
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=224.71 Aligned_cols=287 Identities=17% Similarity=0.197 Sum_probs=205.5
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
..+||+.+.|++.+ +.+++.+.+... .|.+..+..+|+++++++++ .+ ++++++|+++++..++.+
T Consensus 7 ~~~~l~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~--------~~-~~~~~~~gt~a~~~~~~~ 72 (374)
T 3uwc_A 7 PYSYLERQFADIEP---YLNDLREFIKTA--DFTLGAELEKFEKRFAALHN--------AP-HAIGVGTGTDALAMSFKM 72 (374)
T ss_dssp CSCCHHHHTSSCHH---HHHHHHHHHHHT--CCSSCHHHHHHHHHHHHHTT--------CS-EEEEESCHHHHHHHHHHH
T ss_pred eeeccccCCCCchH---HHHHHHHHHHcC--CcccChhHHHHHHHHHHHhC--------CC-cEEEeCCHHHHHHHHHHH
Confidence 56788887776544 788888777654 46677788999999999886 33 688888999999999999
Q ss_pred c-cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 190 L-INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 190 l-~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
+ +++||+|+++.|+|+.+...+...|++++.++.+ +++.+|++.+++++++++++|+ |+||||...+ +++|.
T Consensus 73 ~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~---~~~i~ 145 (374)
T 3uwc_A 73 LNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSE-NGYVIDPEKIEAAITDKTKAIM---PVHYTGNIAD---MPALA 145 (374)
T ss_dssp TTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC-TTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC---HHHHH
T ss_pred cCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC-CCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCC---HHHHH
Confidence 9 9999999999999999999999999999999998 5788999999999988888777 8999999875 67799
Q ss_pred HHHHHcCcEEEEcCcCCccc-cCCCCccccCCCCCCCceEEEccCC--hhhccccceeeeEEeCh-hhHHHHHHHhhcc-
Q 013883 269 SLCIENDVLVFSDEVYDKLA-FEMDHISIASLPGMYERTVTMNSLG--KTFSLTGWKIGWAIAPP-HLTWGVRQAHSFL- 343 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~-~~~~~~~~~~~~~~~~~~i~i~S~S--K~~g~~G~R~G~~~~~~-~~~~~l~~~~~~~- 343 (434)
++|++||+++|+||+|..+. +++. ....+ ..+++.|++ |.++.+|. .|+++++. ++.+.++......
T Consensus 146 ~~~~~~~~~li~D~~~~~g~~~~~~--~~~~~-----~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~ 217 (374)
T 3uwc_A 146 KIAKKHNLHIVEDACQTILGRINDK--FVGSW-----GQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNHGL 217 (374)
T ss_dssp HHHHHTTCEEEEECTTCTTCEETTE--ETTSS-----SSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTE
T ss_pred HHHHHcCCEEEEeCCCccCceeCCe--ecccc-----ccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhcCc
Confidence 99999999999999998653 2221 11111 146777866 99984365 88888764 6767666654311
Q ss_pred -----------ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC--CEeec-CCeeEEEeeecCCCCC
Q 013883 344 -----------TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG--FKVFP-SSGTYFVVVDHTPFGH 409 (434)
Q Consensus 344 -----------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~-~~~~~~~~~~~~~~~~ 409 (434)
.+..+.....+....+ +.+++..++.+++.+.+.+.|++++ +.+.. +.++...|..+. ...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~aa~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 292 (374)
T 3uwc_A 218 INRDVCVEYGINCRMDTIQAVIANRLM----NQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYV-LRV 292 (374)
T ss_dssp EETTEESSCCCBCBCCHHHHHHHHHHG----GGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEE-EEE
T ss_pred cccCccccccccCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEE-EEc
Confidence 1112222222222222 2345667777788888999998874 55532 222222221110 001
Q ss_pred CCHHHHHHHHHHhcCeEEECCC
Q 013883 410 ETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 410 ~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
.+..++.++|.++ ||.+.+|.
T Consensus 293 ~~~~~l~~~L~~~-gi~v~~~~ 313 (374)
T 3uwc_A 293 KYRDQLFQYLKDN-GIEVKIHY 313 (374)
T ss_dssp TTHHHHHHHHHHT-TBCCBCSC
T ss_pred CCHHHHHHHHHHC-CCccccCC
Confidence 1467888888655 99999885
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=220.77 Aligned_cols=273 Identities=21% Similarity=0.225 Sum_probs=202.8
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc-cCCCCeEEEcCC
Q 013883 124 PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL-INPGDEVILFAP 202 (434)
Q Consensus 124 ~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vlv~~p 202 (434)
++.+.+++.+.+..+ .|.+..+..+++++++++++ .+ ++++++|+++++..++.++ +++||+|+++.|
T Consensus 15 ~~~v~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~--------~~-~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~ 83 (367)
T 3nyt_A 15 KDKIDAGIQRVLRHG--QYILGPEVTELEDRLADFVG--------AK-YCISCANGTDALQIVQMALGVGPGDEVITPGF 83 (367)
T ss_dssp HHHHHHHHHHHHHHC--CCSSCHHHHHHHHHHHHHHT--------CS-EEEEESCHHHHHHHHHHHTTCCTTCEEEEESS
T ss_pred CHHHHHHHHHHHhcC--CccCChHHHHHHHHHHHHhC--------CC-cEEEeCCHHHHHHHHHHHhCCCCcCEEEECCC
Confidence 456677777766654 45566678899999999986 34 7899999999999999999 899999999999
Q ss_pred CchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcC
Q 013883 203 FYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDE 282 (434)
Q Consensus 203 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~De 282 (434)
+|..+...+...|++++.++.+++++.+|++.+++++++++++|+ |+||||... ++++|.++|++||+++|+|+
T Consensus 84 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~---~~~~i~~la~~~~~~li~D~ 157 (367)
T 3nyt_A 84 TYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCA---DFDAINAIASKYGIPVIEDA 157 (367)
T ss_dssp SCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCC---CHHHHHHHHHHTTCCBEEEC
T ss_pred ccHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChh---hHHHHHHHHHHcCCEEEEEC
Confidence 999999999999999999999876789999999999988888877 788999776 47779999999999999999
Q ss_pred cCCcc-ccCCCCccccCCCCCCCceEEEccC--ChhhccccceeeeEEeC-hhhHHHHHHHhhc------------cccC
Q 013883 283 VYDKL-AFEMDHISIASLPGMYERTVTMNSL--GKTFSLTGWKIGWAIAP-PHLTWGVRQAHSF------------LTFA 346 (434)
Q Consensus 283 ay~~~-~~~~~~~~~~~~~~~~~~~i~i~S~--SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~------------~~~~ 346 (434)
+|... .+++. ....+ . .+.+.|| +|.+|.+|. .|+++++ +++.+.++..... .++.
T Consensus 158 a~~~g~~~~~~--~~~~~---~--di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~ 229 (367)
T 3nyt_A 158 AQSFGASYKGK--RSCNL---S--TVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSR 229 (367)
T ss_dssp TTTTTCEETTE--ETTSS---S--SEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCC
T ss_pred ccccCCeECCe--eccCC---C--CEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCC
Confidence 99853 33322 11111 1 4778887 899985476 8898884 7777777765542 1344
Q ss_pred CchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecC-Ce---eEE-EeeecCCCCCCCHHHHHHHHHH
Q 013883 347 TSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPS-SG---TYF-VVVDHTPFGHETDIAFCEYLIK 421 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~---~~~-~~~~~~~~~~~~~~~~~~~Ll~ 421 (434)
.+...+.++...|+. +++..++.+++++.+.+.|++.++.+... .+ .++ +.+.+ .+..++.++|.+
T Consensus 230 ~~~~~aa~~~~~l~~----~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~~ 300 (367)
T 3nyt_A 230 LDTLQAAILLPKLEI----FEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRM-----DNRESVQASLKA 300 (367)
T ss_dssp CCHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEEC-----SSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEe-----CCHHHHHHHHHH
Confidence 566666666666654 34455666777788888888877554322 11 111 22222 146678887765
Q ss_pred hcCeEEECCC
Q 013883 422 EVGVVAIPTS 431 (434)
Q Consensus 422 ~~GV~v~pG~ 431 (434)
+||.+.++.
T Consensus 301 -~GI~~~~~~ 309 (367)
T 3nyt_A 301 -AGVPTAVHY 309 (367)
T ss_dssp -HTCCCBCSC
T ss_pred -CCCceeccC
Confidence 499988763
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-27 Score=228.95 Aligned_cols=293 Identities=13% Similarity=0.132 Sum_probs=208.4
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcC---------CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCc-EEEcCCh
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDG---------KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKE-VTVTSGC 179 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~---------~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~-i~~t~G~ 179 (434)
..+++..| | .+.++.+++++.+++.+. ...|.+ +..++++++.+.+.+.+|.+ ++.+ +++|+|+
T Consensus 4 ~~~l~~~~-~-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~g~~--~~~~~i~~t~g~ 77 (362)
T 2c0r_A 4 RAYNFNAG-P-AALPLEVLERAQAEFVDYQHTGMSIMEMSHRGA--VYEAVHNEAQARLLALLGNP--TGYKVLFIQGGA 77 (362)
T ss_dssp CCEECCSS-S-CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSH--HHHHHHHHHHHHHHHHTTCC--SSEEEEEESSHH
T ss_pred ceeeccCC-C-CCCCHHHHHHHHHHHhhhhhcCccccccCCCcH--HHHHHHHHHHHHHHHHhCCC--CCcEEEEECCCc
Confidence 34566655 3 567888998888876431 111211 23567788888888888863 3114 5788999
Q ss_pred HHHHHHHHHHccCCCCeEEEcCCCchhH--HHHHHHcCCEEEEEEcCC-CCC--CCCHHHHHhhcccCCcEEEecCCCCC
Q 013883 180 TEAIAATILGLINPGDEVILFAPFYDSY--EATLSMAGAKIKCITLRP-PDF--AIPIEELKSTISKNTRAILMNTPHNP 254 (434)
Q Consensus 180 ~~ai~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~G~~~~~v~~~~-~~~--~~d~~~l~~~i~~~~~~i~~~~p~NP 254 (434)
++++.+++.+++++||+|++.++.++.+ ...++..| +++.++++. .++ .+|.+.++ +++++++|++++|+||
T Consensus 78 t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~~n~ 154 (362)
T 2c0r_A 78 STQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSNETI 154 (362)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESEETT
T ss_pred hHHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCCcCc
Confidence 9999999999999999999887765553 46677789 999999863 223 35666554 6778999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHH
Q 013883 255 TGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTW 334 (434)
Q Consensus 255 TG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~ 334 (434)
||.+++ ++++| +|+++|+|++|..+.. ...+. . ..+++.|++|.+|++| +||+++++++++
T Consensus 155 tG~~~~--~l~~i------~~~~vivD~a~~~~~~---~~~~~---~---~d~~~~s~~K~~g~~G--~G~l~~~~~~~~ 215 (362)
T 2c0r_A 155 EGAQFK--AFPDT------GSVPLIGDMSSDILSR---PFDLN---Q---FGLVYAGAQKNLGPSG--VTVVIVREDLVA 215 (362)
T ss_dssp TTEECS--SCCCC------TTSCEEEECTTTTTSS---CCCGG---G---CSEEEEETTTTTCCSS--CEEEEEEGGGSS
T ss_pred cceecc--ccccc------CCCEEEEEChhhccCC---ccchh---H---CcEEEEeccccccCcC--cEEEEEcHHHHh
Confidence 999754 34444 8999999999986532 11111 1 1477889999999888 999999988765
Q ss_pred HHHHH------------hhccccCCchHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHHHhhhCC-C-EeecC---C
Q 013883 335 GVRQA------------HSFLTFATSTPMQWAATAALRAPET--YYEELKRDYSAKKAILVEGLNAVG-F-KVFPS---S 395 (434)
Q Consensus 335 ~l~~~------------~~~~~~~~~~~~q~a~~~~L~~~~~--~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~~---~ 395 (434)
.+... .....++++.+.+.++..+|+...+ ++++++++++++++++.+.|+++| + .+..+ .
T Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 295 (362)
T 2c0r_A 216 ESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSR 295 (362)
T ss_dssp SCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGB
T ss_pred hccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHc
Confidence 54321 1123467788888999888875333 578889999999999999999987 6 76421 2
Q ss_pred eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 396 GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
++.++++.+.. + .++.+++++|. ++||.+.||..|
T Consensus 296 ~~~~~~~~~~~-~-~~~~~~~~~L~-~~gi~~~~g~~~ 330 (362)
T 2c0r_A 296 SDMNITFRLAS-E-ELEKEFVKASE-QEGFVGLKGHRS 330 (362)
T ss_dssp CSSEEEEECSC-H-HHHHHHHHHHH-HTTEESCBCCTT
T ss_pred CCcEEEEEcCC-c-chHHHHHHHHH-HCCCeeccCCCC
Confidence 33455666532 1 13567888775 559999998754
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-27 Score=237.05 Aligned_cols=298 Identities=17% Similarity=0.149 Sum_probs=201.0
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
..+||..+.+. +.+.+++.+++..+...|.+..+..+|+++++++++ .+ ++++++|+++|+..++.+
T Consensus 42 ~ylD~~~~~~~----~~v~~a~~~~l~~~~~~y~~~~~~~~l~~~la~~~~--------~~-~v~~t~~gt~A~~~al~~ 108 (467)
T 2oqx_A 42 VFIDLLTDSGT----GAVTQSMQAAMMRGDEAYSGSRSYYALAESVKNIFG--------YQ-YTIPTHQGRGAEQIYIPV 108 (467)
T ss_dssp CSEECSCCSSC----SCCCHHHHHHTTSCCCCSSSCHHHHHHHHHHHHHHC--------CS-EEEEEC--CCSHHHHHHH
T ss_pred eeEecccCCCc----HHHHHHHHHHhccCcceeccCchhHHHHHHHHHHhC--------cC-cEEEcCCcHHHHHHHHHH
Confidence 45666554333 667777777776555678877788899999999986 24 799999999999999999
Q ss_pred ccCC-----C----CeEEEcCCCchhHHHHHHHcCCEEEEEEcC----C-----CCCCCCHHHHHhhccc----CCcEEE
Q 013883 190 LINP-----G----DEVILFAPFYDSYEATLSMAGAKIKCITLR----P-----PDFAIPIEELKSTISK----NTRAIL 247 (434)
Q Consensus 190 l~~~-----g----d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~----~-----~~~~~d~~~l~~~i~~----~~~~i~ 247 (434)
++++ | |+|++..+.|..+.......|+.+...... . .++.+|++.|++++++ ++++|+
T Consensus 109 ~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi 188 (467)
T 2oqx_A 109 LIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIV 188 (467)
T ss_dssp HHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEE
T ss_pred HhccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEE
Confidence 9888 8 998887555566666677778877654211 1 2456899999999973 789999
Q ss_pred ecCCCCCc-ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCc----------cccCCCCccccCCC----CCCCceEEEccC
Q 013883 248 MNTPHNPT-GKMFTREELNVIASLCIENDVLVFSDEVYDK----------LAFEMDHISIASLP----GMYERTVTMNSL 312 (434)
Q Consensus 248 ~~~p~NPT-G~~~~~e~l~~i~~la~~~~~~iI~Deay~~----------~~~~~~~~~~~~~~----~~~~~~i~i~S~ 312 (434)
+++||||| |.+++.+++++|+++|++||+++|+|+++.. ..+.+. ....+. ...+ +++.|+
T Consensus 189 ~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~--~~~~~~~~~~~~~d--~~~~s~ 264 (467)
T 2oqx_A 189 ATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW--TIEQITRETYKYAD--MLAMSA 264 (467)
T ss_dssp EESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTS--CHHHHHHHHGGGCS--EEEEES
T ss_pred EeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCc--cHHHHhhhhhccCC--eEEEec
Confidence 99999998 8999999999999999999999999976543 122221 121111 1122 457899
Q ss_pred Chhhccc-cceeeeEEeChh-hHHHHHHHhhcc-------ccCC-chHHHHHHHHHHhCChHHH-HHHHHHHHHHHHHHH
Q 013883 313 GKTFSLT-GWKIGWAIAPPH-LTWGVRQAHSFL-------TFAT-STPMQWAATAALRAPETYY-EELKRDYSAKKAILV 381 (434)
Q Consensus 313 SK~~g~~-G~R~G~~~~~~~-~~~~l~~~~~~~-------~~~~-~~~~q~a~~~~L~~~~~~~-~~~~~~~~~~~~~l~ 381 (434)
+|.+|++ | ||++++++ +++.+...+... .++. +.....++...|.. ++ ++..++..++++.+.
T Consensus 265 sK~~g~~~G---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~---~~~~~~~~~~~~~~~~l~ 338 (467)
T 2oqx_A 265 KKDAMVPMG---GLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYD---GMNLDWLAYRIAQVQYLV 338 (467)
T ss_dssp SSTTCCSSC---EEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHH
T ss_pred ccccCCCCc---eEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHh---hhhHHHHHHHHHHHHHHH
Confidence 9999866 4 78888877 555444333211 1111 22222222222222 12 123344567788888
Q ss_pred HHhhhCCCEeecCCeeEEEeeecCC--CCCCC----HHHHHHHHHHhcCeEEECCC
Q 013883 382 EGLNAVGFKVFPSSGTYFVVVDHTP--FGHET----DIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 382 ~~L~~~g~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+.|++.|+.+. +.+++++|+++.. .+... ..+++++|++++||.+.||.
T Consensus 339 ~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~ 393 (467)
T 2oqx_A 339 DGLEEIGVVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIG 393 (467)
T ss_dssp HHHHHTTCCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEES
T ss_pred HHHHHCCCeee-cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccc
Confidence 99988888877 7778888887632 11111 34458888566799999954
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-26 Score=228.63 Aligned_cols=299 Identities=18% Similarity=0.163 Sum_probs=209.7
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcC-CCCCCCC---CCcHHHH--HHHH-HHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDG-KNQYARG---HGVPEFN--SAIA-SRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-~~~Y~~~---~G~~~lr--~~ia-~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+.|+|..+ +++ .++.+.+++.+.+.+. ...|+.. .|...++ ++++ +.+.+.+|.+ . ..++++|++++
T Consensus 46 ~~i~l~~~-~~~-~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~--~--~~v~~~sGs~a 119 (447)
T 3h7f_A 46 DTLEMIAS-ENF-VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE--F--ANVQPHSGAQA 119 (447)
T ss_dssp HSEECCTT-CCC-CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--E--EECCCSSHHHH
T ss_pred CceeEecC-CCC-CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCC--c--eEEEeCCHHHH
Confidence 56888554 333 3788888887776532 1223321 2444443 5555 6666666642 1 23337777899
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHH-H----HHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcc
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYE-A----TLSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTG 256 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~-~----~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG 256 (434)
+..++.+++++||+|++++|+|..+. . .+...+..++.++++++++.+|++.+++++.. ++++|++++|+||++
T Consensus 120 ~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~ 199 (447)
T 3h7f_A 120 NAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRV 199 (447)
T ss_dssp HHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCCSC
T ss_pred HHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCCCCc
Confidence 99999999999999999999987721 1 12224556777777766788999999999964 789999999999998
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcCcCC-ccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHH
Q 013883 257 KMFTREELNVIASLCIENDVLVFSDEVYD-KLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG 335 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~~~~iI~Deay~-~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~ 335 (434)
. ++++|.++|++||+++|+||+|. ++.+.+...... . ...+++.|+||.++ |+|.||+++++++++.
T Consensus 200 ~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~--~---~~di~~~s~sK~l~--G~~gG~i~~~~~~~~~ 267 (447)
T 3h7f_A 200 L-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV--P---HADVVSTTVHKTLG--GGRSGLIVGKQQYAKA 267 (447)
T ss_dssp C-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST--T---TCSEEEEESSGGGC--CCSCEEEEECGGGHHH
T ss_pred c-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC--C---CCcEEEecCCcCCC--CCCeEEEEECHHHHHH
Confidence 6 57889999999999999999974 444444322211 1 22377999999875 8999999999999988
Q ss_pred HHHHhhccccCC-chHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhC-----CCEeec-CCeeEEEeeecCCC
Q 013883 336 VRQAHSFLTFAT-STPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAV-----GFKVFP-SSGTYFVVVDHTPF 407 (434)
Q Consensus 336 l~~~~~~~~~~~-~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~-~~~~~~~~~~~~~~ 407 (434)
+.........+. ....+.++..++.. .++++++.++++.++++.+.+.|++. |+++.. +..++++|+++.+.
T Consensus 268 l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 347 (447)
T 3h7f_A 268 INSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDS 347 (447)
T ss_dssp HHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTS
T ss_pred HhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCC
Confidence 877654444433 33335555555554 34467888999999999999999987 898865 34566777877554
Q ss_pred CCCCHHHHHHHHHHhcCeEEE
Q 013883 408 GHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 408 ~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
+. +.+.+.++++++||.+.
T Consensus 348 ~~--~~~~~~~~l~~~GI~v~ 366 (447)
T 3h7f_A 348 PL--DGQAAEDLLHEVGITVN 366 (447)
T ss_dssp SC--CHHHHHHHHHHTTEECB
T ss_pred CC--CHHHHHHHHHHCCeEEe
Confidence 43 33455556677899998
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=232.16 Aligned_cols=298 Identities=17% Similarity=0.139 Sum_probs=200.8
Q ss_pred CeeEeCCCCCC--CC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 110 GAINLGQGFPN--FD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 110 ~~i~l~~g~p~--~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
..|||..|.+. +. .++.+.+++.+++.++. .|. +..++++++++.+.+..+ +.+ +|++++|+++++..+
T Consensus 57 ~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~-~~~---~~~~~~~~l~~~la~~~~---~~~-~v~~~~sgseA~~~a 128 (434)
T 2epj_A 57 RIVDLVLAYGPLILGHKHPRVLEAVEEALARGW-LYG---APGEAEVLLAEKILGYVK---RGG-MIRFVNSGTEATMTA 128 (434)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS-CCS---SCCHHHHHHHHHHHHHHC---TTC-EEEEESSHHHHHHHH
T ss_pred EEEEcccchhcccCCCCCHHHHHHHHHHHHhCC-CCC---CCCHHHHHHHHHHHHhCC---CCC-EEEEeCCHHHHHHHH
Confidence 57899887532 22 57889999999987742 221 223555666666665553 356 899999999999999
Q ss_pred HHHc--cCCCCeEEEcCCCchhHHHHHH--------------HcCC------EEEEEEcCCCCCCCCHHHHHhhccc---
Q 013883 187 ILGL--INPGDEVILFAPFYDSYEATLS--------------MAGA------KIKCITLRPPDFAIPIEELKSTISK--- 241 (434)
Q Consensus 187 ~~~l--~~~gd~Vlv~~p~y~~~~~~~~--------------~~G~------~~~~v~~~~~~~~~d~~~l~~~i~~--- 241 (434)
++.. +.++++|++.+|+|+++...+. ..|. +++.+++. |++.+++++++
T Consensus 129 l~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~------d~~~le~~l~~~~~ 202 (434)
T 2epj_A 129 IRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN------DVEALERVFAEYGD 202 (434)
T ss_dssp HHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETT------CHHHHHHHHHHHGG
T ss_pred HHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCC------CHHHHHHHHHhCCC
Confidence 8872 3346788898999987543221 1232 35555542 79999998874
Q ss_pred CCcEEEecCCCCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccc
Q 013883 242 NTRAILMNTPHNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTG 320 (434)
Q Consensus 242 ~~~~i~~~~p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G 320 (434)
++++|+++..+|+||.++ +.+.+++|.++|++||+++|+||+|.+| ..+.......+...++ +.||||.++ .|
T Consensus 203 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~d----i~s~sK~l~-~G 276 (434)
T 2epj_A 203 RIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGD----IIVLGKIIG-GG 276 (434)
T ss_dssp GEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCCCS----EEEEEGGGG-TT
T ss_pred CEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCCCCC----eeeecchhc-CC
Confidence 556665554467899866 7999999999999999999999999987 3332221111111122 459999999 59
Q ss_pred ceeeeEEeChhhHHHHHHHh---hccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC----CCEe-e
Q 013883 321 WKIGWAIAPPHLTWGVRQAH---SFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV----GFKV-F 392 (434)
Q Consensus 321 ~R~G~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~-~ 392 (434)
+|+||+++++++++.+.... ...+++.+++.+.++.++|+..++ +++.++++++++++++.|+++ ++.. .
T Consensus 277 ~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 354 (434)
T 2epj_A 277 FPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE--EPVYSVSREAAKALEEAASEVLDRTGLPYTI 354 (434)
T ss_dssp SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred cceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 99999999998877665421 224667888888888888874322 345666777777777777653 5542 3
Q ss_pred cCCeeEEEeeecCCCCC-----------CCHHHHHHHHHHhcCeEEECCC
Q 013883 393 PSSGTYFVVVDHTPFGH-----------ETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 393 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
++.|. ++|+.+..... ....+++++|++ +||.+.||.
T Consensus 355 ~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~ 402 (434)
T 2epj_A 355 NRVES-MMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLR-RGVFIAPSN 402 (434)
T ss_dssp EEETT-EEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHH-TTEECCSST
T ss_pred EEeee-EEEEEEeCCCcccchhccccCHHHHHHHHHHHHH-CCeEEeccC
Confidence 44444 56676643110 124578888875 599999985
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=222.13 Aligned_cols=275 Identities=15% Similarity=0.110 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCC--cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc-cCCCCeEEEcC
Q 013883 125 DFVKDAAIQAIRDGKNQYARGHG--VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL-INPGDEVILFA 201 (434)
Q Consensus 125 ~~v~~~~~~~~~~~~~~Y~~~~G--~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vlv~~ 201 (434)
+.+.+++.+++.. .|.+..| ..+||++++++++ .+ ++++++|+++++.+++.++ +++||+|+++.
T Consensus 12 ~~v~~a~~~~~~~---~~~~~~g~~~~~l~~~la~~~~--------~~-~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~ 79 (394)
T 1o69_A 12 GNELKYIEEVFKS---NYIAPLGEFVNRFEQSVKDYSK--------SE-NALALNSATAALHLALRVAGVKQDDIVLASS 79 (394)
T ss_dssp CCHHHHHHHHHHH---TTTSCTTHHHHHHHHHHHHHHC--------CS-EEEEESCHHHHHHHHHHHTTCCTTCEEEEES
T ss_pred HHHHHHHHHHHHc---CCccCCChHHHHHHHHHHHHhC--------CC-cEEEeCCHHHHHHHHHHHcCCCCCCEEEECC
Confidence 4567777777765 3666567 8899999999986 24 8999999999999999999 99999999999
Q ss_pred CCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc---CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEE
Q 013883 202 PFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK---NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLV 278 (434)
Q Consensus 202 p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~---~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~i 278 (434)
|+|+.+...+...|++++.++.+ +++.+|++.+++++++ ++++|++++ |||... ++++|.++|+++|+++
T Consensus 80 ~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~---~l~~i~~l~~~~~~~l 152 (394)
T 1o69_A 80 FTFIASVAPICYLKAKPVFIDCD-ETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAA---KMDEIVEICKENDIVL 152 (394)
T ss_dssp SSCGGGTHHHHHTTCEEEEECBC-TTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCC---CHHHHHHHHHHTTCEE
T ss_pred CccHHHHHHHHHcCCEEEEEEeC-CCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChh---hHHHHHHHHHHcCCEE
Confidence 99999999999999999999988 4788999999999987 789998874 899655 5778999999999999
Q ss_pred EEcCcCC-ccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC-hhhHHHHHHHhhccccC----------
Q 013883 279 FSDEVYD-KLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLTFA---------- 346 (434)
Q Consensus 279 I~Deay~-~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~~~~---------- 346 (434)
|+||+|. ++.+.+.. ...+ .+ +.+.||||..+++|.|+||++++ +++++.++.........
T Consensus 153 i~Dea~~~g~~~~~~~--~~~~---~~--~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g 225 (394)
T 1o69_A 153 IEDAAEALGSFYKNKA--LGTF---GE--FGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYG 225 (394)
T ss_dssp EEECTTCTTCEETTEE--TTSS---SS--EEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCC
T ss_pred EEECcCcccceeCCcc--cccc---cC--cEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccC
Confidence 9999998 55554321 1111 12 45566654444557799999995 78888887764332111
Q ss_pred ----CchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCC----eeE-EEeeecCCCC---------
Q 013883 347 ----TSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSS----GTY-FVVVDHTPFG--------- 408 (434)
Q Consensus 347 ----~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~~-~~~~~~~~~~--------- 408 (434)
.+.....++...++ ++++.+++++++++.+.+.|+++ +.+.++. +++ ++++.+.+..
T Consensus 226 ~~~~~~~~~aa~~l~~l~----~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 300 (394)
T 1o69_A 226 YNYRLSNVLGAIGVAQME----VLEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNACQKD 300 (394)
T ss_dssp CBCBCCHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEE
T ss_pred cccCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhcccccccc
Confidence 12222222222233 46667788889999999999887 6665542 343 2445443210
Q ss_pred ----------CCCHHHHHHHHHHhcCeEEECCC
Q 013883 409 ----------HETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 409 ----------~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
..+..++.+.|.+ +||.+++|.
T Consensus 301 ~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~~~ 332 (394)
T 1o69_A 301 INISQKNITLHPKISKLIEDLKN-KQIETRPLW 332 (394)
T ss_dssp EECCCCCCCCCHHHHHHHHHHHH-TTCCCBCCC
T ss_pred ccccccccccccCHHHHHHHHHH-cCCcccccC
Confidence 0135678777755 699999984
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=228.87 Aligned_cols=309 Identities=14% Similarity=0.091 Sum_probs=214.2
Q ss_pred CCeeEeCCC--CCCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQG--FPNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g--~p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...|||..| ...+. .+|.+.+++.+++.+..+.+.. .+..+++.++++++.+.++. +.+ +|++++|+++|+..
T Consensus 54 ~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~-~~~~~~~~~la~~l~~~~~~--~~~-~v~~~~sGseA~~~ 129 (476)
T 3i5t_A 54 RRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPW-YMATSPAARLAEKIATLTPG--DLN-RIFFTTGGSTAVDS 129 (476)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT-TCBCHHHHHHHHHHHTTSST--TCC-EEEEESSHHHHHHH
T ss_pred CEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccC-ccCCHHHHHHHHHHHhcCCC--CcC-EEEEeCchHHHHHH
Confidence 357888766 22333 4788999999998774433332 45678899999999887753 345 79999999999999
Q ss_pred HHHHccC--------CCCeEEEcCCCchhHHHHHHHcCCE-------------EEEEEcCC--CCCCCC--------HHH
Q 013883 186 TILGLIN--------PGDEVILFAPFYDSYEATLSMAGAK-------------IKCITLRP--PDFAIP--------IEE 234 (434)
Q Consensus 186 ~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~G~~-------------~~~v~~~~--~~~~~d--------~~~ 234 (434)
+++.+.. .++.|++.+|.|+++......++.. +..++... .++..| ++.
T Consensus 130 Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 209 (476)
T 3i5t_A 130 ALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQE 209 (476)
T ss_dssp HHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHH
Confidence 9988863 3579999999999887665544332 22333211 111222 788
Q ss_pred HHhhcc----cCCcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCcccc-CCCCCCCceEE
Q 013883 235 LKSTIS----KNTRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIA-SLPGMYERTVT 308 (434)
Q Consensus 235 l~~~i~----~~~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~-~~~~~~~~~i~ 308 (434)
|++++. +++++|+++.++|++|. +++.+.+++|.++|++||+++|+||+|.+|.+.|...... .+...++
T Consensus 210 le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pd---- 285 (476)
T 3i5t_A 210 FEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPD---- 285 (476)
T ss_dssp HHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCS----
T ss_pred HHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcc----
Confidence 888886 35677778777888886 7788899999999999999999999999987766543333 3322223
Q ss_pred EccCChhhcccc-ceeeeEEeChhhHHHHHHH-------hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 013883 309 MNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQA-------HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAIL 380 (434)
Q Consensus 309 i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l 380 (434)
+.+|||.++ .| +|+|++++++++++.+... ....+++.+++++.++.++|+..++ +++.++++++.+++
T Consensus 286 i~t~sK~l~-~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~--~~~~~~~~~~~~~l 362 (476)
T 3i5t_A 286 IITFAKGVT-SGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMER--EGIVDQAREMADYF 362 (476)
T ss_dssp EEEECGGGG-TTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHH
T ss_pred hhhhhhhhc-CCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 337899999 68 9999999999998887653 2335788899999999999975321 33455666666666
Q ss_pred HHHhhhC----CCEeecCCeeEEEeeecCCCCC--C-------CHHHHHHHHHHhcCeEEECC
Q 013883 381 VEGLNAV----GFKVFPSSGTYFVVVDHTPFGH--E-------TDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 381 ~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~Ll~~~GV~v~pG 430 (434)
++.|+++ .+..+++.|.|+ ++++..... . ...+++++|+++ ||.+.|.
T Consensus 363 ~~~L~~l~~~~~v~~v~~~G~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~ 423 (476)
T 3i5t_A 363 AAALASLRDLPGVAETRSVGLVG-CVQCLLDPTRADGTAEDKAFTLKIDERCFEL-GLIVRPL 423 (476)
T ss_dssp HHHHHTTTTSTTEEEEEEETTEE-EEEECCC-----CCHHHHHHHHHHHHHHHHT-TEECEEE
T ss_pred HHHHHHHhcCCCeEEEEecCcee-EEEEecCccccccccchhHHHHHHHHHHHHC-CCEEEec
Confidence 6666653 234455566654 444432110 0 145677778765 9999884
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-25 Score=220.59 Aligned_cols=298 Identities=15% Similarity=0.080 Sum_probs=194.3
Q ss_pred eeEeCCCCCCCCCcHHHHHHHHHHHHcCC-C------CCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 111 AINLGQGFPNFDGPDFVKDAAIQAIRDGK-N------QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 111 ~i~l~~g~p~~~~~~~v~~~~~~~~~~~~-~------~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
.+.+..+. ++ .++.+.+++.+++.+.. . .|........+++...+.+.+.+|. +++ +|++++| ++++
T Consensus 32 ~~~~~~~~-n~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~-~v~~~sG-s~a~ 105 (420)
T 3gbx_A 32 HIELIASE-NY-TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGA--DYA-NVQPHSG-SQAN 105 (420)
T ss_dssp SEECCTTC-CC-CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTC--SEE-ECCCSSH-HHHH
T ss_pred ceeeeccC-CC-CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCC--CCc-eeEecCc-HHHH
Confidence 34554332 22 57888888888774421 1 2222223344454444566655554 344 5666666 8899
Q ss_pred HHHHHHccCCCCeEEEcCCCchhHH---HHHHH--cCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCccc
Q 013883 184 AATILGLINPGDEVILFAPFYDSYE---ATLSM--AGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGK 257 (434)
Q Consensus 184 ~~~~~~l~~~gd~Vlv~~p~y~~~~---~~~~~--~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~ 257 (434)
..++.+++++||+|+++.|+|..+. ..+.. .+...+.++.+ +++.+|++.+++++++ ++++|++++|+||+
T Consensus 106 ~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~-- 182 (420)
T 3gbx_A 106 FAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID-ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSG-- 182 (420)
T ss_dssp HHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEEC-TTCSCCHHHHHHHHHHHCCSEEEECCTTCCS--
T ss_pred HHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCC-ccCCcCHHHHHHHHHhcCCeEEEEecCccCC--
Confidence 9999999999999999999998743 22222 33455666666 4678999999999987 69999999999974
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcCcCCccc-cCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeCh---hhH
Q 013883 258 MFTREELNVIASLCIENDVLVFSDEVYDKLA-FEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP---HLT 333 (434)
Q Consensus 258 ~~~~e~l~~i~~la~~~~~~iI~Deay~~~~-~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~---~~~ 333 (434)
..+ +++|+++|++||+++|+||+|.... +.+..... + ....+++.|+||.++ |.+.||+++++ ++.
T Consensus 183 ~~~---l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~--~---~~~di~~~s~sK~~~--g~~gg~~~~~~~~~~~~ 252 (420)
T 3gbx_A 183 VVD---WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP--V---PHAHVVTTTTHKTLA--GPRGGLILAKGGDEELY 252 (420)
T ss_dssp CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS--T---TTSSEEEEESSGGGC--SCSCEEEEESSCCHHHH
T ss_pred ccC---HHHHHHHHHHcCCEEEEECCcchhceecccCCcc--c---ccCCEEEeecccCCC--CCCceEEEEcCCcHHHH
Confidence 443 7789999999999999999976433 33222111 1 124488999999985 56679999998 677
Q ss_pred HHHHHHhhcccc-CCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecC-CeeEEEeeecCCCCCC
Q 013883 334 WGVRQAHSFLTF-ATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFPS-SGTYFVVVDHTPFGHE 410 (434)
Q Consensus 334 ~~l~~~~~~~~~-~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~ 410 (434)
+.+......... +++...+.++..++.. .++++++++++++++++.+.+.|++.|+.+.++ ..++++|+.+.+.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~- 331 (420)
T 3gbx_A 253 KKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGTENHLFLLDLVDKNL- 331 (420)
T ss_dssp HHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTC-
T ss_pred HHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCCCCCeEEEEEcCCCCC-
Confidence 666654432222 3334444454445543 356778889999999999999999999988753 455566776644332
Q ss_pred CHHHHHHHHHHhcCeEEEC
Q 013883 411 TDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 411 ~~~~~~~~Ll~~~GV~v~p 429 (434)
+...+.+.| +++||.+.|
T Consensus 332 ~~~~~~~~l-~~~gi~v~~ 349 (420)
T 3gbx_A 332 TGKEADAAL-GRANITVNK 349 (420)
T ss_dssp CHHHHHHHH-HHTTEECEE
T ss_pred CHHHHHHHH-HHCCcEecc
Confidence 355555555 667999998
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=229.27 Aligned_cols=297 Identities=17% Similarity=0.122 Sum_probs=202.1
Q ss_pred CeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 110 GAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 110 ~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
..|||..|.+ .+. .++.+.+++.++++++. .|. +..++++++++.+.+.++ +++ +|++++|+++++..+
T Consensus 53 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~ea~~~a 124 (424)
T 2e7u_A 53 RYLDYVMSWGPLILGHAHPKVLARVRETLERGL-TFG---APSPLEVALAKKVKRAYP---FVD-LVRFVNSGTEATMSA 124 (424)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS-CCS---SCCHHHHHHHHHHHHHCT---TCC-EEEEESSHHHHHHHH
T ss_pred EEEEccccccccccCCCCHHHHHHHHHHHHhCC-CCC---CCCHHHHHHHHHHHHhCC---CCC-EEEEeCCHHHHHHHH
Confidence 5789987742 222 67899999999987642 232 234677778887777664 356 899999999999999
Q ss_pred HHH---ccCCCCeEEEcCCCchhHHHHHHH--------------cCC------EEEEEEcCCCCCCCCHHHHHhhccc--
Q 013883 187 ILG---LINPGDEVILFAPFYDSYEATLSM--------------AGA------KIKCITLRPPDFAIPIEELKSTISK-- 241 (434)
Q Consensus 187 ~~~---l~~~gd~Vlv~~p~y~~~~~~~~~--------------~G~------~~~~v~~~~~~~~~d~~~l~~~i~~-- 241 (434)
++. +.+ ++.|++.+|+|+++...+.. .|. +++.+|+ .|++.+++++++
T Consensus 125 l~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~------~d~~~le~~l~~~~ 197 (424)
T 2e7u_A 125 LRLARGYTG-RPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY------NDPEGLREVLKRRG 197 (424)
T ss_dssp HHHHHHHHC-CCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT------TCHHHHHHHHHHHG
T ss_pred HHHHHHhhC-CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC------CCHHHHHHHHHhCC
Confidence 886 444 57899999999886543211 122 3444443 279999998863
Q ss_pred CCcEEEecCCCCC-cccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccc
Q 013883 242 NTRAILMNTPHNP-TGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLT 319 (434)
Q Consensus 242 ~~~~i~~~~p~NP-TG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 319 (434)
+..++++++|+|+ ||.++ +.+.+++|.++ ++||+++|+||+|.+| ..+.......+...++ +.||||.+| +
T Consensus 198 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~d----i~s~sK~l~-~ 270 (424)
T 2e7u_A 198 EEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGLKPD----LVTLGKILG-G 270 (424)
T ss_dssp GGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTCCCS----EEEECGGGG-T
T ss_pred CCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCCCcc----hhhhhhhhh-C
Confidence 2334445567655 89755 78999999999 9999999999999988 4333222111111122 349999999 6
Q ss_pred cceeeeEEeChhhHHHHHHHh---hccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC----CCEe-
Q 013883 320 GWKIGWAIAPPHLTWGVRQAH---SFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV----GFKV- 391 (434)
Q Consensus 320 G~R~G~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~- 391 (434)
|+|+||+++++++++.+.... ...+++.+++++.++.++|+..++ .+++.++++++++.+++.|+++ ++..
T Consensus 271 G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 349 (424)
T 2e7u_A 271 GLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE-NPGYYAYLEDLGARLEAGLKEVLKEKGLPHT 349 (424)
T ss_dssp TSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH-CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred CcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 999999999999887665421 224667888889888888875322 2445667777777777777653 6532
Q ss_pred ecCCeeEEEeeecCCCCC-----------CCHHHHHHHHHHhcCeEEECCC
Q 013883 392 FPSSGTYFVVVDHTPFGH-----------ETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+++.|. ++|+++...+. .+..+++++|++ +||.+.||.
T Consensus 350 ~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~ 398 (424)
T 2e7u_A 350 VNRVGS-MITVFFTEGPVVTFQDARRTDTELFKRFFHGLLD-RGIYWPPSN 398 (424)
T ss_dssp EEEETT-EEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHT-TTEECCSSS
T ss_pred EEeece-EEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHH-CCeEEeccC
Confidence 344444 66777643110 124568888875 699999985
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-26 Score=229.85 Aligned_cols=310 Identities=16% Similarity=0.106 Sum_probs=210.5
Q ss_pred CCeeEeCCC--CCCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHH
Q 013883 109 HGAINLGQG--FPNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAA 185 (434)
Q Consensus 109 ~~~i~l~~g--~p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~ 185 (434)
...|||..| ...+. .+|.+.+++.+++.+..+.|....+..+++.++++.+.+..+. +.+ +|++++|+++|+..
T Consensus 55 ~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~--~~~-~v~~~~sGseA~~~ 131 (472)
T 3hmu_A 55 EEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPG--DLN-HVFFAGGGSEANDT 131 (472)
T ss_dssp CEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCT--TEE-EEEEESSHHHHHHH
T ss_pred CEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCC--CCC-EEEEeCCHHHHHHH
Confidence 357888766 22233 4789999999998875545555445567788888888777653 345 89999999999999
Q ss_pred HHHHccC--------CCCeEEEcCCCchhHHHHHHHcCC------------EEEEEEcCC----CCCCCC--------HH
Q 013883 186 TILGLIN--------PGDEVILFAPFYDSYEATLSMAGA------------KIKCITLRP----PDFAIP--------IE 233 (434)
Q Consensus 186 ~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~G~------------~~~~v~~~~----~~~~~d--------~~ 233 (434)
+++.+.. ++++|++.+|+|+++......++. .+..++... .++ .| ++
T Consensus 132 aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~ 210 (472)
T 3hmu_A 132 NIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARAR 210 (472)
T ss_dssp HHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHH
Confidence 9998864 468999999999987665555443 244454321 112 34 78
Q ss_pred HHHhhcc----cCCcEEEecCCCCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEE
Q 013883 234 ELKSTIS----KNTRAILMNTPHNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVT 308 (434)
Q Consensus 234 ~l~~~i~----~~~~~i~~~~p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~ 308 (434)
.|+++++ +++++|+++.++|++|.+. +.+.+++|.++|++||+++|+||+|.+|.+.|.......+...++
T Consensus 211 ~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pd---- 286 (472)
T 3hmu_A 211 ELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPH---- 286 (472)
T ss_dssp HHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCS----
T ss_pred HHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCc----
Confidence 8888886 3456666666677888755 888899999999999999999999999876664333322222222
Q ss_pred EccCChhhccccceeeeEEeChhhHHHHHH--HhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHH-HHHHHHHHHhh
Q 013883 309 MNSLGKTFSLTGWKIGWAIAPPHLTWGVRQ--AHSFLTFATSTPMQWAATAALRAPETYYEELKRDYS-AKKAILVEGLN 385 (434)
Q Consensus 309 i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~--~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~-~~~~~l~~~L~ 385 (434)
+.+|||.++..|+|+|++++++++++.+.. .....+++.+++++.++.++|+..++ +++.++++ ++.+++++.|+
T Consensus 287 i~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~--~~~~~~~~~~~~~~l~~~L~ 364 (472)
T 3hmu_A 287 IMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEE--ENILDHVRNVAAPYLKEKWE 364 (472)
T ss_dssp EEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHTHHHHHHHHHH
T ss_pred eeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHH
Confidence 346899998444999999999999988731 12234788899999999998874221 23344455 55555555554
Q ss_pred hC----CCEeecCCeeEEEeeecCCCC----------CCCHHHHHHHHHHhcCeEEECC
Q 013883 386 AV----GFKVFPSSGTYFVVVDHTPFG----------HETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 386 ~~----g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
++ ++..+++.|.|+. +.+.... .....++++.|+++ ||++.|+
T Consensus 365 ~l~~~~~v~~vr~~G~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~ 421 (472)
T 3hmu_A 365 ALTDHPLVGEAKIVGMMAS-IALTPNKASRAKFASEPGTIGYICRERCFAN-NLIMRHV 421 (472)
T ss_dssp GGGGSTTEEEEEEETTEEE-EEECSCGGGTCCBSSCTTHHHHHHHHHHHHT-TBCCEEE
T ss_pred HHhcCCCeEEEEecCceEE-EEEecCccccccccchhHHHHHHHHHHHHHC-CcEEEec
Confidence 43 2445566666544 4432210 00145677888765 9999885
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=221.64 Aligned_cols=247 Identities=19% Similarity=0.206 Sum_probs=180.6
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHH----HHcCCEEEEEE
Q 013883 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATL----SMAGAKIKCIT 222 (434)
Q Consensus 147 G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~ 222 (434)
...++++.++++++ . ++.+++++| ++++..++.+++++||+|+++.|.|+++...+ ...|++++.++
T Consensus 66 ~~~~l~~~la~~~g----~----~~~i~~~sG-~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 136 (398)
T 1gc0_A 66 TLNLLEARMASLEG----G----EAGLALASG-MGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVD 136 (398)
T ss_dssp HHHHHHHHHHHHHT----C----SEEEEESSH-HHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEEC
T ss_pred HHHHHHHHHHHHhC----C----CcEEEECCH-HHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEEC
Confidence 44567777777664 2 224555555 79999999999999999999999999987766 66799998887
Q ss_pred cCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCC
Q 013883 223 LRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM 302 (434)
Q Consensus 223 ~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~ 302 (434)
.. |++.+++++++++++|++++|+||||.+++ +++|+++|++||+++|+||+|..+.+.. .+ .
T Consensus 137 ~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~---~~-----~ 199 (398)
T 1gc0_A 137 MA------DLQALEAAMTPATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR---PL-----E 199 (398)
T ss_dssp TT------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC---GG-----G
T ss_pred CC------CHHHHHHhcCCCCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC---ch-----h
Confidence 64 799999999999999999999999999985 7789999999999999999998765431 11 1
Q ss_pred CCceEEEccCChhhcccccee-eeEEeChhhHH-HHHHHhhc-cccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 013883 303 YERTVTMNSLGKTFSLTGWKI-GWAIAPPHLTW-GVRQAHSF-LTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAI 379 (434)
Q Consensus 303 ~~~~i~i~S~SK~~g~~G~R~-G~~~~~~~~~~-~l~~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~ 379 (434)
.+.++++.|++|.++.+|.|+ ||++++++.+. .++..... ...+.+.+.++++...|+. +....++..++++.
T Consensus 200 ~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~ 275 (398)
T 1gc0_A 200 LGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT----LNLRMDRHCANAQV 275 (398)
T ss_dssp GTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred hCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccch----HHHHHHHHHHHHHH
Confidence 245689999999999899998 99999988765 45544443 3456677778877777764 23344555566666
Q ss_pred HHHHhhhCC---------------CEeec----CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 380 LVEGLNAVG---------------FKVFP----SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 380 l~~~L~~~g---------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
+.+.|++.+ +.+.. ..++++.| .+. ...+.+.+++++.||.+..
T Consensus 276 l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~-----~~~~~~~~~l~~~~i~~~~ 338 (398)
T 1gc0_A 276 LAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAF-ELK-----GGIGAGRRFMNALQLFSRA 338 (398)
T ss_dssp HHHHHHTCTTEEEEEEC----------------CCTTEEEE-EET-----THHHHHHHHHHHCSSSEEC
T ss_pred HHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEE-EEC-----CCHHHHHHHHHhCCCceec
Confidence 666666532 11221 24565544 442 1334566677778888776
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=232.31 Aligned_cols=307 Identities=12% Similarity=0.112 Sum_probs=209.8
Q ss_pred CeeEeCCC--CCCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHH
Q 013883 110 GAINLGQG--FPNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186 (434)
Q Consensus 110 ~~i~l~~g--~p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~ 186 (434)
..|||..| ...+. .+|.+.+++.+++.+..+ +....+..+...++++.+.+..+. +.+ +|++++|+++++..+
T Consensus 76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~~L~e~la~~~~~--~~~-~v~~~~sGseA~~~A 151 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNH-VMFGGLTHEPAARLAKLLVDITPA--GLD-TVFFSDSGSVSVEVA 151 (457)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSC-CCSSSEECHHHHHHHHHHHHHSST--TEE-EEEEESSHHHHHHHH
T ss_pred EEEECCCcHhhhccCCCCHHHHHHHHHHHHhccC-ccccccCCHHHHHHHHHHHHhCCC--CcC-EEEEeCcHHHHHHHH
Confidence 56888776 22233 578899999998876432 221222335556666666665543 345 899999999999999
Q ss_pred HHHccC-------CC-CeEEEcCCCchhHHHHHHHcC--------------CEEEEEEcCCCCC-CCCHHHHHhhcc---
Q 013883 187 ILGLIN-------PG-DEVILFAPFYDSYEATLSMAG--------------AKIKCITLRPPDF-AIPIEELKSTIS--- 240 (434)
Q Consensus 187 ~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~G--------------~~~~~v~~~~~~~-~~d~~~l~~~i~--- 240 (434)
++.+.. +| +.|++.+++|+++.......+ ..+..++.....+ ..|++.|+++++
T Consensus 152 lk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~ 231 (457)
T 3tfu_A 152 AKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHA 231 (457)
T ss_dssp HHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCC
Confidence 988864 55 589999999988655544442 1233334332121 247899999987
Q ss_pred cCCcEEEecC-CCCCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcc
Q 013883 241 KNTRAILMNT-PHNPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSL 318 (434)
Q Consensus 241 ~~~~~i~~~~-p~NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 318 (434)
+++++|+++. ++|++|.++ +.+.+++|.++|++||+++|+||+|.+|.+.+.......+...++ +.||||.++
T Consensus 232 ~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pd----iit~sK~l~- 306 (457)
T 3tfu_A 232 GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPD----IMCVGKALT- 306 (457)
T ss_dssp GGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS----EEEECGGGG-
T ss_pred CCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCce----EEEEChhhh-
Confidence 5678888887 899999866 777899999999999999999999999876654433322222222 239999987
Q ss_pred cc-ceeeeEEeChhhHHHHHHH-----hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC----C
Q 013883 319 TG-WKIGWAIAPPHLTWGVRQA-----HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV----G 388 (434)
Q Consensus 319 ~G-~R~G~~~~~~~~~~~l~~~-----~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g 388 (434)
.| +|+||+++++++++.+... ....+++.+++++.++.++|+..++ +++.++++++++++++.|+++ +
T Consensus 307 gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~ 384 (457)
T 3tfu_A 307 GGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLG--QDWRTRITELAAGLTAGLDTARALPA 384 (457)
T ss_dssp TTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHGGGGGSTT
T ss_pred CCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 56 6999999999999888522 2335788899999999888874211 234555666666666666654 3
Q ss_pred CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 389 FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+..+++.|.| +++.+.. + .+..+++++|+++ ||.+.|..
T Consensus 385 v~~vr~~G~~-~~i~l~~-~-~~~~~~~~~l~~~-Gv~v~~~~ 423 (457)
T 3tfu_A 385 VTDVRVCGAI-GVIECDR-P-VDLAVATPAALDR-GVWLRPFR 423 (457)
T ss_dssp EEEEEECSSC-EEEEESS-C-CCHHHHHHHHHHT-TEECCCBT
T ss_pred eeeeecCCeE-EEEEECC-c-ccHHHHHHHHHHC-CeEEEecC
Confidence 4444556654 4556533 1 2467899988876 99998853
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-25 Score=215.07 Aligned_cols=275 Identities=15% Similarity=0.078 Sum_probs=201.7
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc---cCCCCeEE
Q 013883 122 DGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL---INPGDEVI 198 (434)
Q Consensus 122 ~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l---~~~gd~Vl 198 (434)
+.++.+.+++.+.+.+. .|.+..+..+++++++++++ .+ ++++++|+++++..++.++ +++||+|+
T Consensus 10 ~~~~~v~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~--------~~-~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl 78 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLNSK--QLTQGKRSLLFEEALCEFLG--------VK-HALVFNSATSALLTLYRNFSEFSADRNEII 78 (375)
T ss_dssp CCCHHHHHHHHHHHTSS--CCSSSHHHHHHHHHHHHHHT--------CS-EEEEESCHHHHHHHHHHHSSCCCTTSCEEE
T ss_pred CCCHHHHHHHHHHHHcC--cccCChHHHHHHHHHHHHhC--------CC-eEEEeCCHHHHHHHHHHHhcccCCCCCEEE
Confidence 45778889998888653 24444567889999999886 23 7999999999999999999 89999999
Q ss_pred EcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEE
Q 013883 199 LFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLV 278 (434)
Q Consensus 199 v~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~i 278 (434)
++.|+|+.+...+...|++++.++++++ +.+|++.+++++++++++|++++| ||.+.+ +++|.++|++||+++
T Consensus 79 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~---l~~i~~l~~~~~~~l 151 (375)
T 2fnu_A 79 TTPISFVATANMLLESGYTPVFAGIKND-GNIDELALEKLINERTKAIVSVDY---AGKSVE---VESVQKLCKKHSLSF 151 (375)
T ss_dssp ECSSSCTHHHHHHHHTTCEEEECCBCTT-SSBCGGGSGGGCCTTEEEEEEECG---GGCCCC---HHHHHHHHHHHTCEE
T ss_pred ECCCccHhHHHHHHHCCCEEEEeccCCC-CCCCHHHHHhhcCcCceEEEEeCC---cCCccC---HHHHHHHHHHcCCEE
Confidence 9999999999999999999999998763 478999999999888898887766 999886 577899999999999
Q ss_pred EEcCcCCccccCCCCccccCCCCCCCceEEEccCC--hhhccccceeeeEEe-C-hhhHHHHHHHhhccc----------
Q 013883 279 FSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLG--KTFSLTGWKIGWAIA-P-PHLTWGVRQAHSFLT---------- 344 (434)
Q Consensus 279 I~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~S--K~~g~~G~R~G~~~~-~-~~~~~~l~~~~~~~~---------- 344 (434)
|+||+|..+..... . .+.... .+.+.||| |.+|. | +|++++ + ++++++++.......
T Consensus 152 i~D~a~~~~~~~~~-~---~~~~~~--~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (375)
T 2fnu_A 152 LSDSSHALGSEYQN-K---KVGGFA--LASVFSFHAIKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEV 222 (375)
T ss_dssp EEECTTCTTCEETT-E---ETTSSS--SEEEEECCTTSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEE
T ss_pred EEECccccCCeECC-e---eccccC--CeEEEeCCCCCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCcccccccccc
Confidence 99999986543211 1 121111 37788888 99984 6 788887 4 678787776543211
Q ss_pred ------cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecC----Cee-EEEeeecCCCCCCCH
Q 013883 345 ------FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPS----SGT-YFVVVDHTPFGHETD 412 (434)
Q Consensus 345 ------~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~~-~~~~~~~~~~~~~~~ 412 (434)
+..+.....++...+ +++++..++++++++.+.+.|+++ |+.+..+ .++ +++++.+...+..+.
T Consensus 223 ~~~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (375)
T 2fnu_A 223 KSIGHNFRLNEIQSALGLSQL----KKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCK 298 (375)
T ss_dssp SSCCCBCCCCHHHHHHHHHHH----TTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGH
T ss_pred ccccccCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccccchH
Confidence 122233222222222 246677888889999999999987 7877654 233 344555532111036
Q ss_pred HHHHHHHHHhcCeEEE
Q 013883 413 IAFCEYLIKEVGVVAI 428 (434)
Q Consensus 413 ~~~~~~Ll~~~GV~v~ 428 (434)
.++.++|.+ +||.+.
T Consensus 299 ~~l~~~L~~-~gi~v~ 313 (375)
T 2fnu_A 299 KLILESLHK-RGILAQ 313 (375)
T ss_dssp HHHHHHHHH-TTEECB
T ss_pred HHHHHHHHH-CCCCcc
Confidence 678888854 599998
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-25 Score=219.48 Aligned_cols=257 Identities=15% Similarity=0.136 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHH----cCCEEEEEEcCC
Q 013883 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSM----AGAKIKCITLRP 225 (434)
Q Consensus 150 ~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~----~G~~~~~v~~~~ 225 (434)
+.++++.+.+.+..|. + ++++++|+++++.+++.+++++||+|++++|.|+++...+.. .|++++.++.+
T Consensus 81 p~~~~l~~~la~~~g~----~-~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~- 154 (414)
T 3ndn_A 81 PTVSVFEERLRLIEGA----P-AAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD- 154 (414)
T ss_dssp HHHHHHHHHHHHHHTC----S-EEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred hHHHHHHHHHHHHHCC----C-cEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-
Confidence 3455555555555442 4 688888889999999999999999999999999998777644 99999999875
Q ss_pred CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCc
Q 013883 226 PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYER 305 (434)
Q Consensus 226 ~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~ 305 (434)
|++.+++++++++++|++++|+||||.+.+ +++|+++|++||+++|+||+|....+. . .+ ..+.
T Consensus 155 -----d~~~l~~ai~~~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~-~--~~-----~~g~ 218 (414)
T 3ndn_A 155 -----DLSQWERALSVPTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQ-Q--GF-----PLGV 218 (414)
T ss_dssp -----CHHHHHHHTSSCCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC-C--CG-----GGTC
T ss_pred -----CHHHHHHhcCCCCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccC-C--ch-----hcCC
Confidence 799999999999999999999999999975 677999999999999999999853321 1 11 1234
Q ss_pred eEEEccCChhhcccc-ceeeeEEeChhhHH-HHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 013883 306 TVTMNSLGKTFSLTG-WKIGWAIAPPHLTW-GVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEG 383 (434)
Q Consensus 306 ~i~i~S~SK~~g~~G-~R~G~~~~~~~~~~-~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~ 383 (434)
.+++.|+||.+|.+| +|+|+++++++.+. .++..........+....+++...++ ++....++..++++.+.+.
T Consensus 219 div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~----~l~~r~~~~~~~a~~l~~~ 294 (414)
T 3ndn_A 219 DVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE----TLAIRVQHSNASAQRIAEF 294 (414)
T ss_dssp SEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG----GHHHHHHHHHHHHHHHHHH
T ss_pred CeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 588999999999778 89999999988776 56654443344445554444444443 3455566667788888888
Q ss_pred hhhC-CCE-eecC----------------CeeEEEeeecCCCC---CCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 384 LNAV-GFK-VFPS----------------SGTYFVVVDHTPFG---HETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 384 L~~~-g~~-~~~~----------------~~~~~~~~~~~~~~---~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
|++. ++. +.-| ..|.++++.+.... .+...+|.+.| +..++.+.+|..|
T Consensus 295 L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l-~~~~~~~s~G~~~ 364 (414)
T 3ndn_A 295 LNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKM-RLIDISNNLGDAK 364 (414)
T ss_dssp HHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHC-SSSEECSCCSCSS
T ss_pred HhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhC-ccceEcCCCCCCC
Confidence 8775 332 2222 13446677764210 11234455554 3457888888754
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-26 Score=226.29 Aligned_cols=306 Identities=17% Similarity=0.117 Sum_probs=191.9
Q ss_pred CCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCC-CCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 109 HGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKN-QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 109 ~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~-~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
...+||..|.. .+. .+|.+.+++.+++.+... .| +. +...++++.+.+..+ .++ ++++++|+++++.
T Consensus 53 ~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~-~~----~~~~~la~~l~~~~~---~~~-~v~~~~sGsea~~ 123 (429)
T 4e77_A 53 KAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGA-PT----EMEVKMAQLVTDLVP---TMD-MVRMVNSGTEATM 123 (429)
T ss_dssp CEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSS-CC----HHHHHHHHHHHHHST---TCS-EEEEESSHHHHHH
T ss_pred CEEEECCCchhccccCCCCHHHHHHHHHHHHhCcccCC-CC----HHHHHHHHHHHhhCC---CCC-EEEEeCcHHHHHH
Confidence 36789987743 222 478899999998876432 23 22 445555555555544 255 8999999999999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHH-HcCCEE--EEEEcCCCCC------------CCCHHHHHhhccc--CCcE
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLS-MAGAKI--KCITLRPPDF------------AIPIEELKSTISK--NTRA 245 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~-~~G~~~--~~v~~~~~~~------------~~d~~~l~~~i~~--~~~~ 245 (434)
.+++... .+++.|++.++.|+++...+. ..|... ...+... +. ..|++.+++++++ +..+
T Consensus 124 ~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~ 202 (429)
T 4e77_A 124 SAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSP-GVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVA 202 (429)
T ss_dssp HHHHHHHHHHCCCEEEEETTCCCC------------------CCCT-TSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEE
T ss_pred HHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcC-CCCCccCCceeecCCCCHHHHHHHHHhcCCCEE
Confidence 9988543 356789999999988765221 111111 1111110 00 1179999999874 2344
Q ss_pred EEecCCCCCc-ccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccccee
Q 013883 246 ILMNTPHNPT-GKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKI 323 (434)
Q Consensus 246 i~~~~p~NPT-G~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~ 323 (434)
+++++|+|++ |.+. +.+.+++|.++|++||+++|+||+|.+| ..+.......+...++ +.||||.++ +|+|+
T Consensus 203 ~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pd----i~t~sK~~~-~G~~~ 276 (429)
T 4e77_A 203 CIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPD----LTCLGKIIG-GGMPV 276 (429)
T ss_dssp EEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCS----EEEEEGGGG-TTSCC
T ss_pred EEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCC----eeeeccccc-CCCCe
Confidence 5556776665 4433 4555999999999999999999999988 5443322222221122 458999999 89999
Q ss_pred eeEEeChhhHHHHHHH---hhccccCCchHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeE
Q 013883 324 GWAIAPPHLTWGVRQA---HSFLTFATSTPMQWAATAALRA--PETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTY 398 (434)
Q Consensus 324 G~~~~~~~~~~~l~~~---~~~~~~~~~~~~q~a~~~~L~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 398 (434)
||+++++++++.+... ....+++.+++.+.++.++|+. .++++++.++.....++.|.+.+.+.++....+..+.
T Consensus 277 G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~ 356 (429)
T 4e77_A 277 GAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGG 356 (429)
T ss_dssp EEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETT
T ss_pred EEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeee
Confidence 9999999988776542 1234678889999988888873 2334444444444445555555555565544444555
Q ss_pred EEeeecCCCC-C-----------CCHHHHHHHHHHhcCeEEECCC
Q 013883 399 FVVVDHTPFG-H-----------ETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 399 ~~~~~~~~~~-~-----------~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
++++.+.... . ....+++++|+++ ||.+.||.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~ 400 (429)
T 4e77_A 357 MFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSA 400 (429)
T ss_dssp EEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSST
T ss_pred EEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecC
Confidence 6677764321 0 0126788888765 99999985
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=222.11 Aligned_cols=245 Identities=17% Similarity=0.195 Sum_probs=180.0
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHH----HHcCCEEEEEE
Q 013883 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATL----SMAGAKIKCIT 222 (434)
Q Consensus 147 G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~ 222 (434)
+..+|+++++++++ .. + .|++++| ++++..++. ++++||+|++++|.|++....+ +..|++++.++
T Consensus 68 ~~~~l~~~la~~~g------~~-~-~i~~~sG-~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~ 137 (403)
T 3cog_A 68 TRNCLEKAVAALDG------AK-Y-CLAFASG-LAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVD 137 (403)
T ss_dssp HHHHHHHHHHHHHT------CS-E-EEEESCH-HHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred hHHHHHHHHHHHhC------CC-c-EEEECCH-HHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEEC
Confidence 56789999999886 21 3 6777777 589999998 8999999999999999855543 56899999988
Q ss_pred cCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcC-cEEEEcCcCCccccCCCCccccCCCC
Q 013883 223 LRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIEND-VLVFSDEVYDKLAFEMDHISIASLPG 301 (434)
Q Consensus 223 ~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~-~~iI~Deay~~~~~~~~~~~~~~~~~ 301 (434)
.+ |++.+++++++++++|++++|+||||.+++ +++|+++|+++| +++|+||+|..+.+. .++.
T Consensus 138 ~~------d~~~l~~~i~~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~---~~~~---- 201 (403)
T 3cog_A 138 CS------KIKLLEAAITPETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQ---RPLA---- 201 (403)
T ss_dssp TT------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTC---CTTT----
T ss_pred CC------CHHHHHHhcCcCCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccC---Cccc----
Confidence 65 799999999999999999999999999996 777999999999 999999999986542 1111
Q ss_pred CCCceEEEccCChhhccccc-eeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 013883 302 MYERTVTMNSLGKTFSLTGW-KIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAI 379 (434)
Q Consensus 302 ~~~~~i~i~S~SK~~g~~G~-R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~ 379 (434)
.+.++++.|++|.++.+|. |+||++++ +++++.++........+.+.+.++++...|+.....++ +..++...
T Consensus 202 -~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~r~~----~~~~n~~~ 276 (403)
T 3cog_A 202 -LGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRME----KHFKNGMA 276 (403)
T ss_dssp -TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHHH----HHHHHHHH
T ss_pred -cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHHHHH----HHHHHHHH
Confidence 2467999999999986664 79999995 78888888766655666788888888888876332233 23333333
Q ss_pred HHHHhhh--------------C-CCEeecC----CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 380 LVEGLNA--------------V-GFKVFPS----SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 380 l~~~L~~--------------~-g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
+.+.|++ . ++.+.++ .++++.| .+.. .. +.+.+++++.||.+.
T Consensus 277 l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~l~~----~~-~~~~~~l~~~~i~~~ 338 (403)
T 3cog_A 277 VAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTF-YIKG----TL-QHAEIFLKNLKLFTL 338 (403)
T ss_dssp HHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEE-EESS----CH-HHHHHHHHHCSSSEE
T ss_pred HHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEE-EecC----CH-HHHHHHHHhCCcceE
Confidence 3333332 2 3443333 3787776 3422 12 344556677788554
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=218.33 Aligned_cols=303 Identities=13% Similarity=0.029 Sum_probs=214.5
Q ss_pred eEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCC--CCcEEEcCChHHHHHHHHHH
Q 013883 112 INLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDP--EKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 112 i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~--~~~i~~t~G~~~ai~~~~~~ 189 (434)
+++....+ .+.++.+.+.+.+++......|....+..++++++.+++.+.+|.+.+. +..+++++|+++++..++.+
T Consensus 44 ~~~~~f~~-~~~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a 122 (452)
T 2dgk_A 44 QNLATFCQ-TWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMA 122 (452)
T ss_dssp TBCSCCSC-CCCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHH
T ss_pred cCCCCeeC-CCchHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHH
Confidence 34444443 2345678888877776544556666677889999999999998875442 11499999999999999888
Q ss_pred ccC--------CC-----CeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcc
Q 013883 190 LIN--------PG-----DEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTG 256 (434)
Q Consensus 190 l~~--------~g-----d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG 256 (434)
+.+ +| ++|++++ +|..+...+..+|++++.||.+++++.+|++.|++++++++++|++++|+||||
T Consensus 123 ~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG 201 (452)
T 2dgk_A 123 MKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTG 201 (452)
T ss_dssp HHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTC
T ss_pred HHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCc
Confidence 754 55 5899999 999999999999999999998754689999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHc------CcEEEEcCcCCcccc---CCCCccccCCCCCCCceEEEccCChhhccccceeeeEE
Q 013883 257 KMFTREELNVIASLCIEN------DVLVFSDEVYDKLAF---EMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI 327 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~------~~~iI~Deay~~~~~---~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~ 327 (434)
.+.+ +++|+++|+++ |+++++|++|.++.. .+... ..+ ...+-..+..+++| +++.|+++||++
T Consensus 202 ~~~~---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~-~~~~~d~~~~~~hK-~~~~~~~~G~~~ 274 (452)
T 2dgk_A 202 NYEF---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIV--WDF-RLPRVKSISASGHK-FGLAPLGCGWVI 274 (452)
T ss_dssp BBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC--CST-TSTTEEEEEEETTT-TTCCCSSCEEEE
T ss_pred ccCC---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccch--hhc-CCCCCcEEEECccc-ccCCCCCeEEEE
Confidence 9975 66688889885 999999999998753 22211 111 11233456778899 556899999999
Q ss_pred eChh-hH-HHHHHHhhcc---------ccCC---chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEee
Q 013883 328 APPH-LT-WGVRQAHSFL---------TFAT---STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVF 392 (434)
Q Consensus 328 ~~~~-~~-~~l~~~~~~~---------~~~~---~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 392 (434)
++.+ .+ +.+.....+. .++. ....++++...|. .+.++++.+++.++++++.+.|++. ++++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg--~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 352 (452)
T 2dgk_A 275 WRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG--REGYTKVQNASYQVAAYLADEIAKLGPYEFI 352 (452)
T ss_dssp ESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred EcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe
Confidence 9643 32 3221111111 0111 3344555555554 3567888899999999999999998 58876
Q ss_pred c-----CCeeEEEeeecCCCC--CCCHHHHHHHHHHhcCeEE
Q 013883 393 P-----SSGTYFVVVDHTPFG--HETDIAFCEYLIKEVGVVA 427 (434)
Q Consensus 393 ~-----~~~~~~~~~~~~~~~--~~~~~~~~~~Ll~~~GV~v 427 (434)
. +..+++. +.+.+.. ..+..++.++|.++ ||.+
T Consensus 353 ~~~~~~~~~~~v~-f~~~~~~~~~~~~~~l~~~L~~~-Gi~v 392 (452)
T 2dgk_A 353 CTGRPDEGIPAVC-FKLKDGEDPGYTLYDLSERLRLR-GWQV 392 (452)
T ss_dssp EECCTTTBSSEEE-EEECTTCCCSCCHHHHHHHHHHT-TCBC
T ss_pred cCCCCCCCeEEEE-EEecCcccccCCHHHHHHHHHhc-CCee
Confidence 4 3445444 3443211 01347888888765 9853
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-24 Score=211.82 Aligned_cols=247 Identities=13% Similarity=0.150 Sum_probs=186.2
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH----HHHcCCEEEEEE
Q 013883 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT----LSMAGAKIKCIT 222 (434)
Q Consensus 147 G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~ 222 (434)
+..+|+++++++++ .+ + .|++++| ++++..++.+++++||+|+++.|.|++.... ++..|++++.++
T Consensus 53 ~~~~l~~~la~~~~------~~-~-~i~~~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 123 (386)
T 1cs1_A 53 TRDVVQRALAELEG------GA-G-AVLTNTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 123 (386)
T ss_dssp HHHHHHHHHHHHHT------CS-E-EEEESSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEEC
T ss_pred cHHHHHHHHHHHhC------CC-c-EEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeC
Confidence 56789999999886 22 4 6777777 8999999999999999999999999985543 366799999887
Q ss_pred cCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCC
Q 013883 223 LRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM 302 (434)
Q Consensus 223 ~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~ 302 (434)
.+ |++.+++++++++++|++++|+||||.+++ +++|.++|++||+++|+||+|..+.+.. .+ .
T Consensus 124 ~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~---~~-----~ 186 (386)
T 1cs1_A 124 QG------DEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN---PL-----A 186 (386)
T ss_dssp TT------CHHHHHHHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC---GG-----G
T ss_pred CC------CHHHHHHhhccCCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC---cc-----c
Confidence 64 799999999989999999999999999985 6779999999999999999999876431 11 1
Q ss_pred CCceEEEccCChhhcccccee-eeEEeCh-hhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 013883 303 YERTVTMNSLGKTFSLTGWKI-GWAIAPP-HLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAIL 380 (434)
Q Consensus 303 ~~~~i~i~S~SK~~g~~G~R~-G~~~~~~-~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l 380 (434)
.+.++++.|++|.++.+|.|+ ||+++++ ++++.++........+.+...++++...++. +....+.+.++++.+
T Consensus 187 ~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l 262 (386)
T 1cs1_A 187 LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT----LVPRMELAQRNAQAI 262 (386)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHH
T ss_pred cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccH----HHHHHHHHHHHHHHH
Confidence 346789999999998899887 9999986 7888887766554556777777777777663 344455666777777
Q ss_pred HHHhhhCC-CEee--c----------------CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 381 VEGLNAVG-FKVF--P----------------SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 381 ~~~L~~~g-~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
.+.|++++ +... + ..++++.| .+.. ...++.+. +++.||.+.+
T Consensus 263 ~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~-l~~~gi~~~~ 324 (386)
T 1cs1_A 263 VKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSF-ELDG----DEQTLRRF-LGGLSLFTLA 324 (386)
T ss_dssp HHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEE-EESS----CHHHHHHH-HHTCSSSEEB
T ss_pred HHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEE-EECC----CHHHHHHH-HHhCCcceEc
Confidence 77776652 2111 1 12565544 3422 23445544 4677998874
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-25 Score=213.18 Aligned_cols=186 Identities=19% Similarity=0.214 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHH----HHcCCEEEEEEcCC
Q 013883 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATL----SMAGAKIKCITLRP 225 (434)
Q Consensus 150 ~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~~~ 225 (434)
+|+++++++++ .+ + .+++++| ++++..++.+++++||+|++++|+|+++...+ ...|++++.++.
T Consensus 2 ~l~~~la~~~g------~~-~-~i~~~sG-~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-- 70 (331)
T 1pff_A 2 ALEGKIAKLEH------AE-A-CAATASG-MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-- 70 (331)
T ss_dssp HHHHHHHHHHT------CS-E-EEEESSH-HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT--
T ss_pred hHHHHHHHHhC------CC-e-EEEeCCh-HHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC--
Confidence 68889999886 22 3 5666666 89999999999999999999999999987765 458999998876
Q ss_pred CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHH-cCcEEEEcCcCCccccCCCCccccCCCCCCC
Q 013883 226 PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIE-NDVLVFSDEVYDKLAFEMDHISIASLPGMYE 304 (434)
Q Consensus 226 ~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~-~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~ 304 (434)
.|++.+++++++++++|++++|+||||.+++ +++|.++|++ +|+++|+||+|..+.+.. .+ ..+
T Consensus 71 ----~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~---~~-----~~~ 135 (331)
T 1pff_A 71 ----AVPGNIEKHLKPNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN---PL-----DLG 135 (331)
T ss_dssp ----TSTTHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC---GG-----GGT
T ss_pred ----CCHHHHHHhhcCCCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC---hh-----hcC
Confidence 3788999999989999999999999999995 7789999999 999999999998765421 11 135
Q ss_pred ceEEEccCChhhccccce-eeeEEeCh-hhHHHHHHHhhc-cccCCchHHHHHHHHHHhC
Q 013883 305 RTVTMNSLGKTFSLTGWK-IGWAIAPP-HLTWGVRQAHSF-LTFATSTPMQWAATAALRA 361 (434)
Q Consensus 305 ~~i~i~S~SK~~g~~G~R-~G~~~~~~-~~~~~l~~~~~~-~~~~~~~~~q~a~~~~L~~ 361 (434)
+++++.|++|.++.+|.| +||+++++ ++++.++..... ...+.+.+.++++...++.
T Consensus 136 ~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 195 (331)
T 1pff_A 136 VDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT 195 (331)
T ss_dssp CSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH
T ss_pred CcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch
Confidence 679999999999989999 89999998 888888776654 4556777777777666653
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=214.57 Aligned_cols=277 Identities=15% Similarity=0.139 Sum_probs=197.2
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc-cCCCCeEEEcCC
Q 013883 124 PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL-INPGDEVILFAP 202 (434)
Q Consensus 124 ~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vlv~~p 202 (434)
++.+.+++.+.+... .|.+..+..++|++++++++ .+ ++++++|+++++..++.++ +++||+|+++.|
T Consensus 16 ~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~--------~~-~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~ 84 (373)
T 3frk_A 16 EYEIKFKFEEIYKRN--WFILGDEDKKFEQEFADYCN--------VN-YCIGCGNGLDALHLILKGYDIGFGDEVIVPSN 84 (373)
T ss_dssp HHHHHHHHHHHHHHT--CCSSSHHHHHHHHHHHHHHT--------SS-EEEEESCHHHHHHHHHHHTTCCTTCEEEEETT
T ss_pred CHHHHHHHHHHHHCC--CccCCchHHHHHHHHHHHhC--------CC-eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCC
Confidence 456677777776654 46666678899999999987 34 7899999999999999999 899999999999
Q ss_pred CchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcC
Q 013883 203 FYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDE 282 (434)
Q Consensus 203 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~De 282 (434)
+|..+...+...|++++.++.+++++.+|++.+++++++++++|+ |+||||...+ +++|.++|+++|+++|+|+
T Consensus 85 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~---l~~i~~l~~~~~~~li~D~ 158 (373)
T 3frk_A 85 TFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITEKTKAII---AVHLYGQPAD---MDEIKRIAKKYNLKLIEDA 158 (373)
T ss_dssp SCTHHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCC---HHHHHHHHHHHTCEEEEEC
T ss_pred CcHHHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcCCCCeEEE---EECCCcCccc---HHHHHHHHHHcCCEEEEEC
Confidence 999999999999999999999876789999999999998888887 7889999875 6678999999999999999
Q ss_pred cCCccc-cCCCCccccCCCCCCCceEEEccCC--hhhccccceeeeEEeC-hhhHHHHHHHhhcc------------ccC
Q 013883 283 VYDKLA-FEMDHISIASLPGMYERTVTMNSLG--KTFSLTGWKIGWAIAP-PHLTWGVRQAHSFL------------TFA 346 (434)
Q Consensus 283 ay~~~~-~~~~~~~~~~~~~~~~~~i~i~S~S--K~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~------------~~~ 346 (434)
+|..+. +++. ....+ . .+.+.||+ |.++..| +.|+++++ +++.+.++...... ++.
T Consensus 159 a~~~g~~~~~~--~~~~~---~--d~~~~S~~~~K~l~~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~ 230 (373)
T 3frk_A 159 AQAHGSLYKGM--KVGSL---G--DAAGFSFYPAKNLGSLG-DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSR 230 (373)
T ss_dssp TTCTTCEETTE--ETTSS---S--SEEEEECCTTSSSCCSS-SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCC
T ss_pred CcccCCEECCE--ecccc---c--cEEEEeCcCCCccCccc-eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCC
Confidence 998643 2222 11111 1 37788877 8887224 47888886 45777776655421 122
Q ss_pred CchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeec-CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCe
Q 013883 347 TSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFP-SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGV 425 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV 425 (434)
.+.....+....++ .+++..++.+++.+.+.+.|+++++.+.. +.+....|..+. ....+..++.++|.++ ||
T Consensus 231 ~~~~~aa~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~-gI 304 (373)
T 3frk_A 231 LDELQAGFLRVKLK----YLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFV-IRSEKRDELQKYLNNN-GI 304 (373)
T ss_dssp CCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEE-EEESSHHHHHHHHHHT-TB
T ss_pred CCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEE-EEeCCHHHHHHHHHHC-CC
Confidence 23333333333333 24556677777888888888887744321 122211111110 0011467888888655 99
Q ss_pred EEECCC
Q 013883 426 VAIPTS 431 (434)
Q Consensus 426 ~v~pG~ 431 (434)
.+.++.
T Consensus 305 ~v~~~~ 310 (373)
T 3frk_A 305 GTLIHY 310 (373)
T ss_dssp CCBCSC
T ss_pred CcccCc
Confidence 998764
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=210.28 Aligned_cols=271 Identities=20% Similarity=0.226 Sum_probs=188.3
Q ss_pred CCCCcHHHHHHHHHHHHcCCCCCCCC--CCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeE
Q 013883 120 NFDGPDFVKDAAIQAIRDGKNQYARG--HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEV 197 (434)
Q Consensus 120 ~~~~~~~v~~~~~~~~~~~~~~Y~~~--~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~V 197 (434)
+++.++.+.+.+. ....+.|... ....++++.++++++ .+ ++++++|+++++..++.+++++||+|
T Consensus 31 ~~~~~~~~~~~~~---~~~~~~y~~~~~~~~~~l~~~la~~~g--------~~-~~~~~~~gt~a~~~al~~l~~~gd~v 98 (412)
T 2cb1_A 31 GFKTLEEGQERFA---TGEGYVYARQKDPTAKALEERLKALEG--------AL-EAVVLASGQAATFAALLALLRPGDEV 98 (412)
T ss_dssp CCSSHHHHHHHHH---HCCSCSBTTTCCHHHHHHHHHHHHHHT--------CS-EEEEESSHHHHHHHHHHTTCCTTCEE
T ss_pred ecCChHHHHHHhc---cccCcCcCCCCChHHHHHHHHHHHHhC--------CC-cEEEECCHHHHHHHHHHHHhCCCCEE
Confidence 3555666665543 3344667654 345678888888775 34 79999999999999999999999999
Q ss_pred EEcCCCchhHHHHH----HHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHH
Q 013883 198 ILFAPFYDSYEATL----SMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIE 273 (434)
Q Consensus 198 lv~~p~y~~~~~~~----~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~ 273 (434)
+++.|.|..+...+ ...|++++.++.+ ++.+++++++++++|++++|+||||.+++ +++|+++|++
T Consensus 99 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------~~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~ 168 (412)
T 2cb1_A 99 VAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE-------PEAVREALSAKTRAVFVETVANPALLVPD---LEALATLAEE 168 (412)
T ss_dssp EEETTCCHHHHHHHHHTTTTTTCEEEEECSS-------HHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHH
T ss_pred EEeCCCchhHHHHHHHHHHHcCCEEEEECCC-------HHHHHHHhccCCeEEEEeCCCCCCccccc---HHHHHHHHHH
Confidence 99999999866553 4479999888653 89999999999999999999999999985 7789999999
Q ss_pred cCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeCh-----------------------
Q 013883 274 NDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP----------------------- 330 (434)
Q Consensus 274 ~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~----------------------- 330 (434)
||+++|+||+|..+.+... .. ..+.++++.|++|.++.+|.|+|++++.+
T Consensus 169 ~~~~li~D~~~~~~~~~~~--~~-----~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 241 (412)
T 2cb1_A 169 AGVALVVDNTFGAAGALCR--PL-----AWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWE 241 (412)
T ss_dssp HTCEEEEECGGGTTTTSCC--GG-----GGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HH
T ss_pred cCCEEEEECCCccccccCC--cc-----ccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhh
Confidence 9999999999987622111 11 12467899999999988999999988644
Q ss_pred -----hhHHHHHHHh-hccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEee--c--------
Q 013883 331 -----HLTWGVRQAH-SFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVF--P-------- 393 (434)
Q Consensus 331 -----~~~~~l~~~~-~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~-------- 393 (434)
++.+.++... .......++...+++...++. ++...++..++.+.+.+.|.+. ++..+ +
T Consensus 242 ~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~----l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~ 317 (412)
T 2cb1_A 242 ALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLET----VALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAH 317 (412)
T ss_dssp HHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGG----HHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTH
T ss_pred ccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCch----HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccH
Confidence 2333333322 111222334444444444432 3344455667788888888875 66633 2
Q ss_pred --------CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 394 --------SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 394 --------~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
..+++ +.+.+ . +.+++ .+++++.||.+ .|+
T Consensus 318 ~~~~~~~~~~~~i-v~~~~-~----~~~~~-~~~l~~~~i~~-~~s 355 (412)
T 2cb1_A 318 RNARKYLASGGPI-LTLDL-G----DLERA-SRFLGAIRLLK-AAN 355 (412)
T ss_dssp HHHHHHCSSSCSE-EEEEC-S----SHHHH-HHHHHHCSSEE-CSC
T ss_pred HHHHHhCCCCceE-EEEEe-C----CHHHH-HHHHHhCCeee-ecc
Confidence 12343 34444 2 34444 44556779999 775
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-24 Score=212.30 Aligned_cols=246 Identities=16% Similarity=0.210 Sum_probs=181.1
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH----HHHcCCEEEEEE
Q 013883 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT----LSMAGAKIKCIT 222 (434)
Q Consensus 147 G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~ 222 (434)
...+|++.++++++ .+ +.++++++++++..++.+++++||+|++++|.|+++... ++..|++++.++
T Consensus 60 ~~~~l~~~la~~~g--------~~-~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 130 (389)
T 3acz_A 60 TVEQFEEMVCSIEG--------AA-GSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLID 130 (389)
T ss_dssp HHHHHHHHHHHHHT--------CS-EEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHhC--------CC-eEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEEC
Confidence 34578888888775 22 355555667999999999999999999999999987665 577999999987
Q ss_pred cCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCC
Q 013883 223 LRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM 302 (434)
Q Consensus 223 ~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~ 302 (434)
.. |++.+++++++++++|++++|+||||.+++ +++|+++|++||+++|+|++|..+.+. . .+.
T Consensus 131 ~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~-~--~~~----- 193 (389)
T 3acz_A 131 TS------DVEKVKAAWKPNTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFL-K--PLE----- 193 (389)
T ss_dssp TT------CHHHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC-C--GGG-----
T ss_pred CC------CHHHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccc-C--ccc-----
Confidence 63 799999999999999999999999999996 678999999999999999999876532 1 111
Q ss_pred CCceEEEccCChhhcccccee-eeEEeCh-hhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 013883 303 YERTVTMNSLGKTFSLTGWKI-GWAIAPP-HLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAIL 380 (434)
Q Consensus 303 ~~~~i~i~S~SK~~g~~G~R~-G~~~~~~-~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l 380 (434)
.+.++++.|++|.++.+|.|+ ||+++++ ++++.++........+.+...++++...|+... ...++..++...+
T Consensus 194 ~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~----~r~~~~~~~~~~l 269 (389)
T 3acz_A 194 LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLP----IRMQIHMENGLKV 269 (389)
T ss_dssp TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH----HHHHHHHHHHHHH
T ss_pred cCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccHHH----HHHHHHHHHHHHH
Confidence 245689999999999899998 9999998 898888776654455566677777777776532 2233344455555
Q ss_pred HHHhhhCC---------------CEee----cCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 381 VEGLNAVG---------------FKVF----PSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 381 ~~~L~~~g---------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
.+.|++.+ +.+. ...++++. +.+. . .+.+.+++++.||.+.+
T Consensus 270 ~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~-~~l~-----~-~~~~~~~l~~~~i~~~~ 330 (389)
T 3acz_A 270 AKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFL-FEMK-----S-FEAAKKLMEHLKVCTLA 330 (389)
T ss_dssp HHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEE-EEES-----S-HHHHHHHHTTCSSSEEB
T ss_pred HHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEE-EEEC-----C-HHHHHHHHHhCCCcEEC
Confidence 55555431 1111 11255544 4442 1 33455566778998887
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-24 Score=213.16 Aligned_cols=253 Identities=17% Similarity=0.149 Sum_probs=188.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHH----HHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATL----SMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~ 223 (434)
..+|++.++++++ .+ ++++++|+++++..++.+++++||+|+++.|.|+++...+ ...|.+++.++.
T Consensus 68 ~~~l~~~la~~~g--------~~-~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 138 (392)
T 3qhx_A 68 RTALEAALAAVED--------AA-FGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVAL 138 (392)
T ss_dssp HHHHHHHHHHHTT--------CS-EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred HHHHHHHHHHHhC--------CC-cEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCC
Confidence 4567777777664 33 6888888899999999999999999999999999887766 668999999886
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
+ |++.+++++++++++|++++|+||||.+.+ +++|+++|++||+++|+|++|..+... .. . ..
T Consensus 139 ~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~-~~--~-----~~ 201 (392)
T 3qhx_A 139 A------DLDAVRAAIRPTTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQ-QP--L-----SL 201 (392)
T ss_dssp T------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC-CG--G-----GG
T ss_pred C------CHHHHHHhhCCCCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccC-Ch--H-----Hh
Confidence 5 799999999999999999999999999985 778999999999999999999864321 11 1 12
Q ss_pred CceEEEccCChhhcccc-ceeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSLTG-WKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILV 381 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G-~R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~ 381 (434)
+.++++.|++|.+|.+| .|+||++++ +++.+.++........+.++..++++...|+. +....++..++.+.+.
T Consensus 202 ~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~----l~~~~~~~~~~~~~l~ 277 (392)
T 3qhx_A 202 GADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKT----LVLRMQRHSENAAAVA 277 (392)
T ss_dssp TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHH
T ss_pred CCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH----HHHHHHHHHHHHHHHH
Confidence 34588999999999766 799999998 68888888777666777888888888887775 3334455666777777
Q ss_pred HHhhhC-CCE-eecC-----------------CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 382 EGLNAV-GFK-VFPS-----------------SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 382 ~~L~~~-g~~-~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+.|++. ++. +..+ .|+ ++++.+.. +......+...| +..|+.+..|+.+
T Consensus 278 ~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~-~~~~~l~~-~~~~~~~~~~~l-~~~~~~~s~G~~~ 345 (392)
T 3qhx_A 278 EFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGG-MVSVRMRA-GRTAAEQLCAKT-NIFILAESLGSVE 345 (392)
T ss_dssp HHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCS-EEEEEETT-CHHHHHHHHHHC-SSSEECSCCCCSS
T ss_pred HHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCce-EEEEEeCC-cHHHHHHHHHhC-CCceECCCCCCCC
Confidence 777765 332 2111 134 45566532 111233454444 4457888777654
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-25 Score=226.59 Aligned_cols=302 Identities=13% Similarity=0.074 Sum_probs=202.7
Q ss_pred CeeEeCCCC--CCCC-CcHHHH-H-HHHH---HHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 110 GAINLGQGF--PNFD-GPDFVK-D-AAIQ---AIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 110 ~~i~l~~g~--p~~~-~~~~v~-~-~~~~---~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
..+||..|. .++. .+|.+. + ++.+ ++.+.. .|.+ .+..+.+.++++.+.+..+. .+++ +|++++|+++
T Consensus 55 ~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~-~~~~-~~~~~~~~~la~~la~~~~~-~~~~-~v~~~~~gse 130 (449)
T 2cjg_A 55 RYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNK-PSNS-DVYSVAMARFVETFARVLGD-PALP-HLFFVEGGAL 130 (449)
T ss_dssp EEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCC-CCTT-TCCCHHHHHHHHHHHHHHCC-TTCC-EEEEESSHHH
T ss_pred EEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcC-CCCc-ccCCHHHHHHHHHHHHhcCC-CCCC-EEEEeCchHH
Confidence 467886653 2333 378888 8 8888 776543 3442 23345556666666665552 3456 8999999999
Q ss_pred HHHHHHHHcc---C----------C-CCeEEEcCCCchhHHHHHHH-c--------C-----CEEEEEEcCC--CCC---
Q 013883 182 AIAATILGLI---N----------P-GDEVILFAPFYDSYEATLSM-A--------G-----AKIKCITLRP--PDF--- 228 (434)
Q Consensus 182 ai~~~~~~l~---~----------~-gd~Vlv~~p~y~~~~~~~~~-~--------G-----~~~~~v~~~~--~~~--- 228 (434)
|+..+++.+. . + ||+|++.+|.|+++...... . + .+++.+|+++ ...
T Consensus 131 A~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 210 (449)
T 2cjg_A 131 AVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAM 210 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHH
T ss_pred HHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhcccc
Confidence 9999987543 2 2 89999999999875442211 1 1 1455555542 110
Q ss_pred ----CCCHHHHHhhcc---cCCcEEEecCCCCCcc-cCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCC
Q 013883 229 ----AIPIEELKSTIS---KNTRAILMNTPHNPTG-KMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLP 300 (434)
Q Consensus 229 ----~~d~~~l~~~i~---~~~~~i~~~~p~NPTG-~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~ 300 (434)
..+++.|+++++ +++++|+++.++|||| .+++.+++++|.++|++||+++|+||+|.++.+.|.......+.
T Consensus 211 ~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~ 290 (449)
T 2cjg_A 211 AALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLD 290 (449)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHT
T ss_pred chhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccC
Confidence 135666888885 4667776665579999 58899999999999999999999999999887665432222221
Q ss_pred CCCCceEEEccCChhhccccceeeeEEeChhhHHHHH-----HHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHH
Q 013883 301 GMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVR-----QAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSA 375 (434)
Q Consensus 301 ~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~-----~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~ 375 (434)
. ..+ +.||||.+ |+||+++++++++.+. ......+++.+.+.+.++.++|+..++ +++.+++++
T Consensus 291 ~-~~d---i~t~sK~l-----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~--~~~~~~~~~ 359 (449)
T 2cjg_A 291 V-APD---IVAFGKKT-----QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEA--EGLFERAVQ 359 (449)
T ss_dssp C-CCS---EEEECGGG-----SSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHH--HTHHHHHHH
T ss_pred C-Cce---EEEecCcc-----cEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHH
Confidence 1 122 34799987 7999999998876522 122335678889999999998874322 345677777
Q ss_pred HHHHHHHHhhhC-----C-CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 376 KKAILVEGLNAV-----G-FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 376 ~~~~l~~~L~~~-----g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
+++++++.|+++ + +...++.|.|+ ++++... .+..+++++|++ +||.+.||
T Consensus 360 ~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~-~~~~~~~--~~~~~~~~~l~~-~Gv~v~~~ 416 (449)
T 2cjg_A 360 HGKYLRARLDELAADFPAVVLDPRGRGLMC-AFSLPTT--ADRDELIRQLWQ-RAVIVLPA 416 (449)
T ss_dssp HHHHHHHHHHHHHHHSTTTSEEEEEETTEE-EEECSSH--HHHHHHHHHHHH-TTEECEEE
T ss_pred HHHHHHHHHHHHHhhCCCceeeEeeccEEE-EEEECCh--HHHHHHHHHHHH-CCeEEecC
Confidence 888888877653 2 54556666655 4566321 125678888886 59999986
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.6e-24 Score=208.52 Aligned_cols=285 Identities=13% Similarity=0.024 Sum_probs=200.5
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHHcCCCC-CCCCCCcHHHHHHH-HHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc-
Q 013883 114 LGQGFPNFDGPDFVKDAAIQAIRDGKNQ-YARGHGVPEFNSAI-ASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL- 190 (434)
Q Consensus 114 l~~g~p~~~~~~~v~~~~~~~~~~~~~~-Y~~~~G~~~lr~~i-a~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l- 190 (434)
+..+.|++++++.+.+++.+++..+... |.+ ...+|++++ +++++ . .+ ++++++|+++++.+++.++
T Consensus 5 i~~~~p~~~~~~~i~~a~~~~~~~~~~~~~~~--~~~~l~~~~~a~~~g------~-~~-~~v~~~sgt~al~~al~~l~ 74 (377)
T 3ju7_A 5 IPFLRASTVPVIEYLDELKEIDASHIYTNYGP--INQRFEQTIMSGFFQ------N-RG-AVTTVANATLGLMAAIQLKK 74 (377)
T ss_dssp BCSCCCCCCCGGGGHHHHHHHHHHTCCSSSCH--HHHHHHHHHHHHTST------T-CS-EEEEESCHHHHHHHHHHHHS
T ss_pred eeccCCCCCCcHHHHHHHHHHHHcCCcccCCH--HHHHHHHHHHHHHhC------C-CC-eEEEeCCHHHHHHHHHHHcC
Confidence 3346899999999999999998876432 232 467888888 88765 1 33 6888899999999999998
Q ss_pred cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhc-ccC--CcEEEecCCCCCcccCCCHHHHHHH
Q 013883 191 INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTI-SKN--TRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 191 ~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i-~~~--~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
+++||+|+++.|+|..+...+...|++++.++++++++.+|++.+++++ +++ +++|+ |+||+|...+ +++|
T Consensus 75 ~~~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~---~~~i 148 (377)
T 3ju7_A 75 RKKGKYALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMN---LEEY 148 (377)
T ss_dssp CTTCCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCC---CHHH
T ss_pred CCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccC---HHHH
Confidence 8999999999999999999999999999999998768999999999988 566 88876 6789999875 5668
Q ss_pred HHHHHHcCcEEEEcCcCCcccc-CCCCccc-cCCCCCCCceEEEccC--ChhhccccceeeeEEeC-hhhHHHHHHHhhc
Q 013883 268 ASLCIENDVLVFSDEVYDKLAF-EMDHISI-ASLPGMYERTVTMNSL--GKTFSLTGWKIGWAIAP-PHLTWGVRQAHSF 342 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~~-~~~~~~~-~~~~~~~~~~i~i~S~--SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~ 342 (434)
.++|+ ||+++|+|++|..... .+. .+ ..+ .+ +.+.|| +|.++ +| +.|+++.+ +++.++++..+..
T Consensus 149 ~~la~-~~~~vi~D~a~a~g~~~~~~--~~g~~~---~d--~~~~S~~~~K~l~-~g-~gG~~~~~~~~l~~~~~~~~~~ 218 (377)
T 3ju7_A 149 EELEK-KGVPVVVDAAPGFGLMNGGM--HYGQDF---SG--MIIYSFHATKPFG-IG-EGGLIYSKNEEDIQRIKRMGNF 218 (377)
T ss_dssp HHHHH-TTCCBEEECTTCTTCEETTE--ETTTTC---SS--EEEEECBTTSSSC-CB-SCEEEEESCHHHHHHHHHHTBT
T ss_pred HHHHh-cCCEEEEECCCccCCeECCE--eccCCC---Cc--EEEEECCCCCcCC-CC-CcEEEEECCHHHHHHHHHHHhc
Confidence 88899 9999999999986432 211 11 111 12 445554 69998 45 67877765 6777777776542
Q ss_pred c------------ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC---CEeecCCe--eEE--Eeee
Q 013883 343 L------------TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG---FKVFPSSG--TYF--VVVD 403 (434)
Q Consensus 343 ~------------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---~~~~~~~~--~~~--~~~~ 403 (434)
. .+..+.+.+.++...|+. ++...++.+++++.+.+.|++++ +.+.+..+ .++ +.+.
T Consensus 219 g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~----l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (377)
T 3ju7_A 219 GFDTNRECTMMGFNCKMSEYAAAIGIATMKK----WDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPIL 294 (377)
T ss_dssp TBCTTSCBCSSCCBCCCCHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEE
T ss_pred CCCCCCceeeccccCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEE
Confidence 2 344555555555555654 44455556666667777777664 33332222 121 1222
Q ss_pred cCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 404 HTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 404 ~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+. +..+.+++.++|. ++||.+..+.
T Consensus 295 ~~--~~~~~~~l~~~L~-~~gI~~~~~~ 319 (377)
T 3ju7_A 295 CP--EEVRNKQVIEDLK-KQKIEARLYF 319 (377)
T ss_dssp CC--TTSCHHHHHHHHH-TTTBCCBCTT
T ss_pred eC--ChhhHHHHHHHHH-HCCCceeccc
Confidence 22 1113667887775 4599987764
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=214.05 Aligned_cols=255 Identities=16% Similarity=0.168 Sum_probs=187.0
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEE---cCChHHHHHHHHHHccCCCCeEEEcC-CCchhHHHH------
Q 013883 141 QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTV---TSGCTEAIAATILGLINPGDEVILFA-PFYDSYEAT------ 210 (434)
Q Consensus 141 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~---t~G~~~ai~~~~~~l~~~gd~Vlv~~-p~y~~~~~~------ 210 (434)
.|+.. |..+|++.++++++ .+ ..++ ++|+++|+..++.+++++||+|++++ |.|..+...
T Consensus 55 ~y~~~-~~~~Le~~lA~l~g--------~e-~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~ 124 (409)
T 3jzl_A 55 GYDDE-GRDTLERVYATVFK--------TE-AALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQ 124 (409)
T ss_dssp CTTCH-HHHHHHHHHHHHHT--------CS-EEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSS
T ss_pred CCChh-HHHHHHHHHHHHhC--------CC-cEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccc
Confidence 44443 45678888888776 34 3444 88889999999999999999999998 999998854
Q ss_pred ----HHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecC----CCCCcccCCCHHHHHHHHHHHHH--cCcEEEE
Q 013883 211 ----LSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNT----PHNPTGKMFTREELNVIASLCIE--NDVLVFS 280 (434)
Q Consensus 211 ----~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~----p~NPTG~~~~~e~l~~i~~la~~--~~~~iI~ 280 (434)
++..|++++.++.++ ++.+|++.+++++++++++|++++ |+||||.+ .++++|+++|++ ||+++|+
T Consensus 125 ~~~~l~~~G~~~~~v~~~~-~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v---~~l~~I~~la~~~~~~~~liv 200 (409)
T 3jzl_A 125 GQGSLKDFHIGYSSVPLLE-NGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTI---EKIKEMIVFVKNINPEVIVFV 200 (409)
T ss_dssp SSSCTGGGTCEEEECCCCT-TSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCH---HHHHHHHHHHHHHCTTCEEEE
T ss_pred hhhHHHHcCCEEEEeCCCC-CCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCcc---ccHHHHHHHHHhhCCCCEEEE
Confidence 456799999998875 688999999999999999999999 99999966 478999999999 9999999
Q ss_pred cCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccc-ceeeeEEeChhhHHHHHHHhhccc----cCCchHHHHHH
Q 013883 281 DEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQAHSFLT----FATSTPMQWAA 355 (434)
Q Consensus 281 Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~~~~~~~----~~~~~~~q~a~ 355 (434)
|++|..+.+..+... .+..++++|++|.+|.+| .+.||++++++++++++....... .++....++++
T Consensus 201 D~a~~~~~~~~~p~~-------~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~ 273 (409)
T 3jzl_A 201 DNCYGEFVEYQEPPE-------VGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSLLEM 273 (409)
T ss_dssp ECTTCTTTSSCCSGG-------GTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHH
T ss_pred eCCcccccccCCccc-------cCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHHHHHHH
Confidence 999988764322211 234589999999998554 346999999999998887543211 22222113444
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCee----EEEeeecCCCCCCCHHHHHHHHHHh
Q 013883 356 TAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGT----YFVVVDHTPFGHETDIAFCEYLIKE 422 (434)
Q Consensus 356 ~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Ll~~ 422 (434)
...|. .+...+++..+++..+.+.|+++|+++.+.... ..+.+.+. +.+...+|++.|.+.
T Consensus 274 l~gl~----~~~~r~~~~~~~a~~la~~L~~~g~~v~p~~~~~~~~~i~~i~l~--~~~~~~~~~~~L~~~ 338 (409)
T 3jzl_A 274 YQGFF----LAPHVTAQAIKGARFTAAMLAEFGVEADPVWDAPRTDLIQSVSFH--NKEKMVAFAQAIQAA 338 (409)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCCEEECS--CHHHHHHHHHHHHHT
T ss_pred HHHHh----hHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCccEEEEEEeC--CHHHHHHHHHHHHhc
Confidence 44443 345567778889999999999999988654322 13334442 112345677777543
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-24 Score=211.66 Aligned_cols=290 Identities=15% Similarity=0.069 Sum_probs=196.2
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHc--CCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEE-cCChHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRD--GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTV-TSGCTEAIAAT 186 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~-t~G~~~ai~~~ 186 (434)
+.++|+.|. .+.++.+.+++.+.... +...+.+ ...++.+++.+.+.+.+|.+ +++ +|++ |+|+++++.++
T Consensus 40 ~~~~~~~~~--~~~~~~v~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~g~~-~~~-~i~~~t~g~t~al~~~ 113 (398)
T 2fyf_A 40 RDGRFGSGP--SKVRLEQLQTLTTTAAALFGTSHRQA--PVKNLVGRVRSGLAELFSLP-DGY-EVILGNGGATAFWDAA 113 (398)
T ss_dssp SSCBCCSSS--CCCCHHHHHGGGTTTTTTTTSCTTSH--HHHHHHHHHHHHHHHHTTCC-TTC-EEEEEETCHHHHHHHH
T ss_pred CCccccCCC--CCCCHHHHHHHhhcCCCccCcCcCCH--HHHHHHHHHHHHHHHHhCCC-CCc-eEEEeCCchhHHHHHH
Confidence 567777552 24567777766552101 1111211 12344555666666666654 345 7988 99999999999
Q ss_pred HHHccCCCCeEEEcCCCchh-HHHHHHHc--CCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHH
Q 013883 187 ILGLINPGDEVILFAPFYDS-YEATLSMA--GAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREE 263 (434)
Q Consensus 187 ~~~l~~~gd~Vlv~~p~y~~-~~~~~~~~--G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~ 263 (434)
+.+++++| .+++..+.|.. ....+... |++++.++.++ +...+. .+++++++|++++|+||||.+++.++
T Consensus 114 ~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-g~~~~~-----~i~~~~~~v~~~~~~nptG~~~~~~~ 186 (398)
T 2fyf_A 114 AFGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITSDP-GSAPEP-----QTDPSVDVIAWAHNETSTGVAVAVRR 186 (398)
T ss_dssp HHHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEECCT-TCCCCC-----CCCTTCSEEEEESEETTTTEECCCCC
T ss_pred HHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEecCC-CCCCCc-----cccCCCCEEEEeCcCCCcceecchHH
Confidence 99999887 22333333321 12245555 88888898872 333332 25678999999999999999998777
Q ss_pred HHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHh---
Q 013883 264 LNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAH--- 340 (434)
Q Consensus 264 l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~--- 340 (434)
+.++ +|+++|+|++|..+... ..+. +..+++.|++|.+|.+| ++||+++++++++.++...
T Consensus 187 i~~~------~~~~vivD~a~~~~~~~---~~~~------~~di~~~s~sK~~~~~g-g~g~l~~~~~~~~~l~~~~~~~ 250 (398)
T 2fyf_A 187 PEGS------DDALVVIDATSGAGGLP---VDIA------ETDAYYFAPQKNFASDG-GLWLAIMSPAALSRIEAIAATG 250 (398)
T ss_dssp CTTC------C-CEEEEECTTTTTTSC---CCGG------GCSEEEECTTSTTCSCS-SEEEEEECHHHHHHHHHHHHTT
T ss_pred hhhh------cCCeEEEEeccccCCcc---cCcc------cCcEEEEecCcccCCCC-ceEEEEECHHHHHHhhcccccC
Confidence 6554 89999999999875321 1111 23478899999999775 6999999999988775431
Q ss_pred ------------------hccccCCchHHHHHHHHHHhCChHH--HHHHHHHHHHHHHHHHHHhhhC-CCEeec--C--C
Q 013883 341 ------------------SFLTFATSTPMQWAATAALRAPETY--YEELKRDYSAKKAILVEGLNAV-GFKVFP--S--S 395 (434)
Q Consensus 341 ------------------~~~~~~~~~~~q~a~~~~L~~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~--~ 395 (434)
.....+++...+.++..+|+...+. +++++++++++++.+.+.|+++ |+++.. + .
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~ 330 (398)
T 2fyf_A 251 RWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLR 330 (398)
T ss_dssp CCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGB
T ss_pred CCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhc
Confidence 1222455666677777777653333 7788899999999999999988 888763 3 3
Q ss_pred eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 396 GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+++++|+.++. +. +..+++++|.++ ||.+.||.
T Consensus 331 ~~~~~~~~~~~-~~-~~~~l~~~L~~~-gI~v~~g~ 363 (398)
T 2fyf_A 331 SQVVGTIDFVD-DV-DAGTVAKILRAN-GIVDTEPY 363 (398)
T ss_dssp CSSEEEEEECT-TS-CHHHHHHHHHHT-TCBCCSCC
T ss_pred CCcEEEEECCC-CC-CHHHHHHHHHHC-CcEEecCc
Confidence 56577887742 32 577899988776 99999873
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=214.96 Aligned_cols=257 Identities=17% Similarity=0.194 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcC-CCchhHHHHH----------HHcCCEE
Q 013883 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFA-PFYDSYEATL----------SMAGAKI 218 (434)
Q Consensus 150 ~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~-p~y~~~~~~~----------~~~G~~~ 218 (434)
..++++.+.+.+.+|.+.... +++++ ++++|+..++.+++++||+|++++ |.|..+...+ +..|+++
T Consensus 65 ~~~~~l~~~la~~~g~~~~~~-~i~~~-sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~ 142 (431)
T 3ht4_A 65 IGRDTLEKVYADVFGAEAGLV-RPQII-SGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGY 142 (431)
T ss_dssp HHHHHHHHHHHHHTTCSEECC-BTTSC-SHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEE
T ss_pred hhHHHHHHHHHHHhCCCcccc-cceee-CHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEE
Confidence 346666666766666543222 33355 568999999999999999999998 9999988665 3479999
Q ss_pred EEEEcCCCCCCCCHHHHHhhcccCCcEEEec-CCCCCcccCCCHHHHHHHHHHHHH--cCcEEEEcCcCCccccCCCCcc
Q 013883 219 KCITLRPPDFAIPIEELKSTISKNTRAILMN-TPHNPTGKMFTREELNVIASLCIE--NDVLVFSDEVYDKLAFEMDHIS 295 (434)
Q Consensus 219 ~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~-~p~NPTG~~~~~e~l~~i~~la~~--~~~~iI~Deay~~~~~~~~~~~ 295 (434)
+.++.++ ++.+|++.+++++++++++|+++ +||||+|...+.+++++|+++|++ +|+++|+||+|..+.++.+...
T Consensus 143 ~~v~~~~-~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~~ 221 (431)
T 3ht4_A 143 NAVPLTE-GGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCH 221 (431)
T ss_dssp EECCBCT-TSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGGG
T ss_pred EEeCCCC-CCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCccc
Confidence 9999875 58899999999999999999998 599999999999999999999999 9999999999999876433221
Q ss_pred ccCCCCCCCceEEEccCChhhcc-ccceeeeEEeChhhHHHHHHHhhccccC----CchHHHHHHHHHHhCChHHHHHHH
Q 013883 296 IASLPGMYERTVTMNSLGKTFSL-TGWKIGWAIAPPHLTWGVRQAHSFLTFA----TSTPMQWAATAALRAPETYYEELK 370 (434)
Q Consensus 296 ~~~~~~~~~~~i~i~S~SK~~g~-~G~R~G~~~~~~~~~~~l~~~~~~~~~~----~~~~~q~a~~~~L~~~~~~~~~~~ 370 (434)
+ +..+++.|++|.+|. .+...||+++++++++.++.......++ ++....+++...|. .+...+
T Consensus 222 ---~----g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~----~~~~~~ 290 (431)
T 3ht4_A 222 ---V----GADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFF----LAPHVA 290 (431)
T ss_dssp ---T----TCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHH----HHHHHH
T ss_pred ---c----CCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHhh----hHHHHH
Confidence 1 234899999999762 1244599999999999887755432221 11111333333333 345566
Q ss_pred HHHHHHHHHHHHHhhhCCCEeecCCe----eEEEeeecCCCCCCCHHHHHHHHHHh
Q 013883 371 RDYSAKKAILVEGLNAVGFKVFPSSG----TYFVVVDHTPFGHETDIAFCEYLIKE 422 (434)
Q Consensus 371 ~~~~~~~~~l~~~L~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Ll~~ 422 (434)
++..++.+.+.+.|+++|+++.+... +..+.+.+. +.+...++++.|.+.
T Consensus 291 ~~~~~~a~~l~~~L~~~g~~v~p~~~~~~~~li~~i~l~--~~~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 291 GQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFD--DKDRMIAFCQAIQYA 344 (431)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEESCTTSCCSSSCCEEECC--CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCcCEecCCCCCCCccEEEEEEeC--CHHHHHHHHHHHHhc
Confidence 77888899999999999988765422 223334442 111244677777553
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-24 Score=213.20 Aligned_cols=253 Identities=18% Similarity=0.207 Sum_probs=184.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEE---cCChHHHHHHHHHHccCCCCeEEEcC-CCchhHHH-------
Q 013883 141 QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTV---TSGCTEAIAATILGLINPGDEVILFA-PFYDSYEA------- 209 (434)
Q Consensus 141 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~---t~G~~~ai~~~~~~l~~~gd~Vlv~~-p~y~~~~~------- 209 (434)
.|+.. |..+|++.++++++ .+ ..++ ++|+++|+..++.++++|||+|++++ |.|..+..
T Consensus 70 ~Y~~~-g~~~Le~~lA~l~g--------~e-~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~ 139 (427)
T 3hvy_A 70 GYNDI-GRDSLDRVYANIFN--------TE-SAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDS 139 (427)
T ss_dssp CTTCH-HHHHHHHHHHHHHT--------CS-EEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTT
T ss_pred CCCch-hHHHHHHHHHHHhC--------CC-ceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccc
Confidence 45443 56778888888776 34 4455 78889999999999999999999999 99998773
Q ss_pred ----HHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc--cCCcEEEecC----CCCCcccCCCHHHHHHHHHHHHH--cCcE
Q 013883 210 ----TLSMAGAKIKCITLRPPDFAIPIEELKSTIS--KNTRAILMNT----PHNPTGKMFTREELNVIASLCIE--NDVL 277 (434)
Q Consensus 210 ----~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~--~~~~~i~~~~----p~NPTG~~~~~e~l~~i~~la~~--~~~~ 277 (434)
.+...|++++.++. +++.+|++.++++++ +++|+|++++ |+||||.+ .++++|+++|++ +|++
T Consensus 140 ~~~~~l~~~G~~~~~v~~--~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v---~dl~~i~~ia~~~~~g~~ 214 (427)
T 3hvy_A 140 KKVGSLREYGVKYKMVDL--KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRI---AEIAEIIKSIREVNENVI 214 (427)
T ss_dssp CCSCCTGGGTCEEEECCC--BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCH---HHHHHHHHHHHHHCSSSE
T ss_pred hhhhHHHHcCCEEEEecC--CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccH---HHHHHHHHHHHHhCCCCE
Confidence 34567999999988 378899999999998 7899999998 99999865 589999999999 8999
Q ss_pred EEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccc-ceeeeEEeChhhHHHHHHHhhccccC--C-chHH-H
Q 013883 278 VFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQAHSFLTFA--T-STPM-Q 352 (434)
Q Consensus 278 iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~~~~~~~~~--~-~~~~-q 352 (434)
+|+|++|..+.+...... .+..++++|++|.+|..| .+.||++++++++++++........+ . +.+. .
T Consensus 215 livD~a~~~~~~~~~p~~-------~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a 287 (427)
T 3hvy_A 215 VFVDNCYGEFVEEKEPTD-------VGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVM 287 (427)
T ss_dssp EEEECTTCTTTSSSCGGG-------GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCH
T ss_pred EEEECCccccccCCCCcc-------cCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHH
Confidence 999999988764332211 134589999999998444 56799999999999988754322221 1 1122 3
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCee----EEEeeecCCCCCCCHHHHHHHHHH
Q 013883 353 WAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGT----YFVVVDHTPFGHETDIAFCEYLIK 421 (434)
Q Consensus 353 ~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Ll~ 421 (434)
+.+...|. .+...+++..++...+.+.|+++|+++.+.... .++.+.+. +.+...+|++.|..
T Consensus 288 ~~~~~gl~----~~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~li~~~~l~--~~~~~~~f~~~l~~ 354 (427)
T 3hvy_A 288 RSLYEGLF----MAPHVTIEAVKGAVFCARIMELAGFDVLPKYNDKRTDIIQAIKFN--DEKKLIDFIKGIQT 354 (427)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSEEEEECS--SHHHHHHHHHHHHH
T ss_pred HHHHHhHh----HHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCceEEEEEeCC--CHHHHHHHHHHhcc
Confidence 33433333 345567778889999999999999988765332 13344442 11123456666643
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-24 Score=211.95 Aligned_cols=209 Identities=16% Similarity=0.188 Sum_probs=161.3
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHH----HHHHcCCEEEEEE
Q 013883 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA----TLSMAGAKIKCIT 222 (434)
Q Consensus 147 G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~v~ 222 (434)
+..+||++++++++ .++.+++++| ++++.+++. ++++||+|+++.|.|++... .++..|++++.++
T Consensus 56 ~~~~lr~~la~~~g--------~~~~i~~~sG-t~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~ 125 (393)
T 1n8p_A 56 NRENLERAVAALEN--------AQYGLAFSSG-SATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN 125 (393)
T ss_dssp HHHHHHHHHHHHTT--------CSEEEEESCH-HHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES
T ss_pred hHHHHHHHHHHHhC--------CCcEEEECCh-HHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeC
Confidence 45688999888875 2224555555 899999999 99999999999999996544 3456799998887
Q ss_pred cCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHc----CcEEEEcCcCCccccCCCCccccC
Q 013883 223 LRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIEN----DVLVFSDEVYDKLAFEMDHISIAS 298 (434)
Q Consensus 223 ~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~----~~~iI~Deay~~~~~~~~~~~~~~ 298 (434)
.+ | +.+++++++++++|++++|+||||.+++ +++|+++|+++ |+++|+|++|..+.+. + ...
T Consensus 126 ~~------d-~~l~~~i~~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~-~---~~~ 191 (393)
T 1n8p_A 126 DL------L-NDLPQLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS-N---PLN 191 (393)
T ss_dssp SH------H-HHHHHHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-C---GGG
T ss_pred CC------h-HHHHHhcccCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC-C---HHH
Confidence 65 7 8999999989999999999999999996 77799999999 9999999999987653 1 111
Q ss_pred CCCCCCceEEEccCChhhcccccee-eeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 013883 299 LPGMYERTVTMNSLGKTFSLTGWKI-GWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAK 376 (434)
Q Consensus 299 ~~~~~~~~i~i~S~SK~~g~~G~R~-G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~ 376 (434)
+ +.++++.|++|.+|.+|+|+ ||++++ +++++.+.........+.+...+.++...++. +....++..++
T Consensus 192 ~----~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~----~~~~~~~~~~~ 263 (393)
T 1n8p_A 192 F----GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT----LHLRVRQAALS 263 (393)
T ss_dssp G----TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT----HHHHHHHHHHH
T ss_pred c----CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccch----HHHHHHHHHHH
Confidence 2 45699999999999899999 999985 78888887765544445556666666666664 33344555666
Q ss_pred HHHHHHHhhhC
Q 013883 377 KAILVEGLNAV 387 (434)
Q Consensus 377 ~~~l~~~L~~~ 387 (434)
++.+.+.|++.
T Consensus 264 ~~~l~~~L~~~ 274 (393)
T 1n8p_A 264 ANKIAEFLAAD 274 (393)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHHhC
Confidence 67777777665
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=210.23 Aligned_cols=211 Identities=16% Similarity=0.218 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH----HHHcCCEEEEEEcC
Q 013883 149 PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT----LSMAGAKIKCITLR 224 (434)
Q Consensus 149 ~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~~ 224 (434)
.+|++.++++++ . ++ .|++++|+ +++..++.+++++||+|+++.|.|+++... +...|++++.++.+
T Consensus 117 ~~l~~~lA~l~g------~-~~-~v~~~sG~-~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 187 (445)
T 1qgn_A 117 VVLEEKISALEG------A-ES-TLLMASGM-CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA 187 (445)
T ss_dssp HHHHHHHHHHHT------C-SE-EEEESCHH-HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS
T ss_pred HHHHHHHHHHhC------C-Cc-EEEeCCHH-HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence 477777777765 2 23 67777665 999999999999999999999999987764 45689999998764
Q ss_pred CCCCCCCHHHHHhhcccCC-cEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 225 PPDFAIPIEELKSTISKNT-RAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 225 ~~~~~~d~~~l~~~i~~~~-~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
|++.+++++++++ ++|++++|+||||.+.+ +++|+++|++||+++|+|++|...... . . + ..
T Consensus 188 ------d~~~l~~ai~~~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~-~--~---~--~~ 250 (445)
T 1qgn_A 188 ------DVGALELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQ-K--A---L--AL 250 (445)
T ss_dssp ------CHHHHHHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC-C--T---T--TT
T ss_pred ------CHHHHHHHhccCCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC-C--c---c--cc
Confidence 7999999999999 99999999999999986 667999999999999999999864321 1 1 1 12
Q ss_pred CceEEEccCChhhcccc-ceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVE 382 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~ 382 (434)
+..+++.|++|.+|..| .++||+++++++++.+...........+....+++...|+. +....+++.++++.+.+
T Consensus 251 g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~----l~~r~~~~~~~a~~l~~ 326 (445)
T 1qgn_A 251 GADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAE 326 (445)
T ss_dssp TCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG----HHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHH
Confidence 34588999999998444 37999999999988887655433333455554555455543 34445566667788888
Q ss_pred HhhhC-CC
Q 013883 383 GLNAV-GF 389 (434)
Q Consensus 383 ~L~~~-g~ 389 (434)
.|++. ++
T Consensus 327 ~L~~~p~v 334 (445)
T 1qgn_A 327 ILEAHPKV 334 (445)
T ss_dssp HHHTCTTE
T ss_pred HHhcCCCc
Confidence 88876 44
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-24 Score=212.84 Aligned_cols=249 Identities=15% Similarity=0.203 Sum_probs=182.8
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCCcEEE---cCChHHHHHHHHHHccCCCCeEEEcC-CCchhHHHH-----------H
Q 013883 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTV---TSGCTEAIAATILGLINPGDEVILFA-PFYDSYEAT-----------L 211 (434)
Q Consensus 147 G~~~lr~~ia~~l~~~~g~~~~~~~~i~~---t~G~~~ai~~~~~~l~~~gd~Vlv~~-p~y~~~~~~-----------~ 211 (434)
|..+|++.++++++ .+ ..++ ++|+++++..++.++++|||+|++++ |.|..+... +
T Consensus 74 ~~~~Le~~lA~l~g--------~e-~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l 144 (427)
T 3i16_A 74 GRDSLDAVYARVFN--------TE-SALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSL 144 (427)
T ss_dssp HHHHHHHHHHHHHT--------CS-EEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCT
T ss_pred HHHHHHHHHHHHhC--------Cc-ceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHH
Confidence 55678888888776 33 3345 78889999999999999999999999 999988744 4
Q ss_pred HHcCCEEEEEEcCCCCCCCCHHHHHhhcc--cCCcEEEecC----CCCCcccCCCHHHHHHHHHHHHH--cCcEEEEcCc
Q 013883 212 SMAGAKIKCITLRPPDFAIPIEELKSTIS--KNTRAILMNT----PHNPTGKMFTREELNVIASLCIE--NDVLVFSDEV 283 (434)
Q Consensus 212 ~~~G~~~~~v~~~~~~~~~d~~~l~~~i~--~~~~~i~~~~----p~NPTG~~~~~e~l~~i~~la~~--~~~~iI~Dea 283 (434)
...|++++.++.++ ++.+|++.++++++ +++++|++++ |+||||.+ +++++|+++|++ +|+++|+|++
T Consensus 145 ~~~G~~~~~v~~~~-~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i---~dl~~i~~la~~~~~g~~livD~a 220 (427)
T 3i16_A 145 KEFGINYKQVDLKE-DGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLI---EDIKSIVDCVKNIRKDIICFVDNC 220 (427)
T ss_dssp GGGTCEEEECCCCT-TSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCH---HHHHHHHHHHHHHCTTSEEEEECT
T ss_pred HHcCCEEEEecCcc-CCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccH---HHHHHHHHHHHHhCCCCEEEEECC
Confidence 56799999998864 57799999999998 7899999998 99999865 589999999999 9999999999
Q ss_pred CCccccCCCCccccCCCCCCCceEEEccCChhhcccc-ceeeeEEeChhhHHHHHHHhhccccCC--ch-HH-HHHHHHH
Q 013883 284 YDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQAHSFLTFAT--ST-PM-QWAATAA 358 (434)
Q Consensus 284 y~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~~~~~~~~~~--~~-~~-q~a~~~~ 358 (434)
|..+.+...... .+..++++|++|.+|.+| .+.||++++++++++++.......++. .. .. .+.+...
T Consensus 221 ~~~~~~~~~p~~-------~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~g 293 (427)
T 3i16_A 221 YGEFMDTKEPTD-------VGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQG 293 (427)
T ss_dssp TTTTSSSSCGGG-------GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHH
T ss_pred CccccccCCccc-------cCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHHHHHHHHHH
Confidence 998764322211 234589999999998545 678999999999998887543222221 11 21 2333333
Q ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCee----EEEeeecCCCCCCCHHHHHHHHHH
Q 013883 359 LRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGT----YFVVVDHTPFGHETDIAFCEYLIK 421 (434)
Q Consensus 359 L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Ll~ 421 (434)
|. .+...+++..+++..+.+.|+++|+++.+.... .++.+.+. +.+...+|++.|..
T Consensus 294 l~----~~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~~i~~i~l~--~~~~~~~f~~~l~~ 354 (427)
T 3i16_A 294 LF----LAPHISMEALKGAILCSRIMELAGFEVMPKYDEKRSDIIQSIKFN--DKDKLIEFCKGIQT 354 (427)
T ss_dssp HH----HHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCEEEECS--SHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCccEEEEEEEC--CHHHHHHHHHHHhh
Confidence 32 345667888889999999999999988765332 13334432 11124467776654
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=212.49 Aligned_cols=297 Identities=15% Similarity=0.125 Sum_probs=199.4
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHc----CCC----CCCCC-CCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRD----GKN----QYARG-HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~----~~~----~Y~~~-~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~ 180 (434)
+.+.|..+..+. .++.+.+++.+++.. +.. .|.+. .-..++++.++++++ .+++ +|++++|++
T Consensus 67 ~~iyld~~~~g~-~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~-~v~~t~g~t 138 (465)
T 3e9k_A 67 NAIYFLGNSLGL-QPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVG------ANEK-EIALMNALT 138 (465)
T ss_dssp BCEECBTTTSCC-EETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHT------CCGG-GEEECSCHH
T ss_pred CeEEecCCccCC-ChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcC------CCcC-CEEEECCHH
Confidence 567777664442 344454445444322 111 12221 122456777777665 4466 899999999
Q ss_pred HHHHHHHHHccCCCCe---EEEcCCCchhHHH----HHHHcCCEEE----EEEcCCCCCCCCHHHHHhhcc---cCCcEE
Q 013883 181 EAIAATILGLINPGDE---VILFAPFYDSYEA----TLSMAGAKIK----CITLRPPDFAIPIEELKSTIS---KNTRAI 246 (434)
Q Consensus 181 ~ai~~~~~~l~~~gd~---Vlv~~p~y~~~~~----~~~~~G~~~~----~v~~~~~~~~~d~~~l~~~i~---~~~~~i 246 (434)
+++.+++.+++++||. |+++.|.|++... .++..|+++. .+...++++.+|+++++++++ +++++|
T Consensus 139 ~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv 218 (465)
T 3e9k_A 139 VNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVI 218 (465)
T ss_dssp HHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEE
T ss_pred HHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEE
Confidence 9999999999877655 9999999998444 5667898752 222222467889999999996 578999
Q ss_pred EecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeE
Q 013883 247 LMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWA 326 (434)
Q Consensus 247 ~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~ 326 (434)
++++||||||.+++ +++|.++|++||+++|+|++|..... ...+.. .+..+++.|++|.++....++|++
T Consensus 219 ~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~g~~---~~~~~~----~~~D~~~~s~~K~l~~gp~~~g~l 288 (465)
T 3e9k_A 219 LFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAVGNV---ELYLHD----WGVDFACWCSYKYLNAGAGGIAGA 288 (465)
T ss_dssp EEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHH----HTCCEEEECSSSTTCCCTTCCCEE
T ss_pred EEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhcCCc---CCchhh----cCCCEEEECcccccccCCCceEEE
Confidence 99999999999996 56788999999999999999875321 111111 134588899999993122368999
Q ss_pred EeChhhHHHHHHHh-------------------------hccccCCchHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHH
Q 013883 327 IAPPHLTWGVRQAH-------------------------SFLTFATSTPMQWAATAALRAPETY-YEELKRDYSAKKAIL 380 (434)
Q Consensus 327 ~~~~~~~~~l~~~~-------------------------~~~~~~~~~~~q~a~~~~L~~~~~~-~~~~~~~~~~~~~~l 380 (434)
++++++++.+.... ++...+++.....++.++|+..+++ +++++++++++++++
T Consensus 289 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l 368 (465)
T 3e9k_A 289 FIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYL 368 (465)
T ss_dssp EECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 99988765432110 0011245555566666666643333 788889999999999
Q ss_pred HHHhhh-----------CCCEeecCC----eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 381 VEGLNA-----------VGFKVFPSS----GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 381 ~~~L~~-----------~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
.+.|++ .|+++..+. .+.++++.+.. +..+++++|.++ ||.+..
T Consensus 369 ~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~----~~~~l~~~L~~~-Gi~v~~ 427 (465)
T 3e9k_A 369 EYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV----PNKDVFQELEKR-GVVCDK 427 (465)
T ss_dssp HHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC----TTCCHHHHHHTT-TEECEE
T ss_pred HHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC----CHHHHHHHHHHC-CEEEec
Confidence 999987 688887765 23345555531 345788888655 998763
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.4e-23 Score=208.87 Aligned_cols=296 Identities=14% Similarity=0.101 Sum_probs=208.2
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEE---EcCChHHHHHHHHHHccCC----
Q 013883 121 FDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVT---VTSGCTEAIAATILGLINP---- 193 (434)
Q Consensus 121 ~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~---~t~G~~~ai~~~~~~l~~~---- 193 (434)
..+++.+.+++.+++......|....+..++++.+.+++.+.+|.+.+++ +++ +++|+++++.+++.++..+
T Consensus 66 ~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~-~~~~g~~t~ggtea~~~a~~a~~~~~~~~ 144 (502)
T 3hbx_A 66 TWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEA-ETAVGVGTVGSSEAIMLAGLAFKRKWQNK 144 (502)
T ss_dssp CCCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSS-CCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccc-cCCcceecCcHHHHHHHHHHHHHHHHhHH
Confidence 34567788888777765444444444567888899999999999875455 343 4899999999998887655
Q ss_pred ----CC-----eEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHH
Q 013883 194 ----GD-----EVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL 264 (434)
Q Consensus 194 ----gd-----~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l 264 (434)
|| +|+++.++|..+...+..+|++++.||++++++.+|++.+++++++++++|++++|+||||.+.+ +
T Consensus 145 ~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~---l 221 (502)
T 3hbx_A 145 RKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFED---V 221 (502)
T ss_dssp HHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCC---H
T ss_pred HHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccC---H
Confidence 76 89999999999999999999999999998655899999999999999999999999999999975 5
Q ss_pred HHHHHHHHHc------CcEEEEcCcCCcccc---CCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC-hhhHH
Q 013883 265 NVIASLCIEN------DVLVFSDEVYDKLAF---EMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTW 334 (434)
Q Consensus 265 ~~i~~la~~~------~~~iI~Deay~~~~~---~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~ 334 (434)
++|.++|+++ |+++++|++|.++.. .+.... .+. ...-.++..+.+|.++ .+.++||++.. ++.+.
T Consensus 222 ~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~--~~~-~~~~D~v~~s~hK~l~-~p~g~G~~~~~~~~~l~ 297 (502)
T 3hbx_A 222 KLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEW--DFR-LPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLP 297 (502)
T ss_dssp HHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC--STT-STTEEEEEEETTTTTC-CCSSCEEEEESSGGGSC
T ss_pred HHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccccc--ccC-CCCceEEEECcccccC-CCCCeEEEEEeCHHHhh
Confidence 6688889988 999999999987642 221111 111 1234566778899775 67789988875 33331
Q ss_pred H-HHHHhhcc---------ccCC---chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC-CEeecC--CeeE
Q 013883 335 G-VRQAHSFL---------TFAT---STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG-FKVFPS--SGTY 398 (434)
Q Consensus 335 ~-l~~~~~~~---------~~~~---~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~--~~~~ 398 (434)
. +.....+. .++. ....++++...+. .+.+++..++..++++++.+.|++++ +++..+ ..++
T Consensus 298 ~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg--~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 375 (502)
T 3hbx_A 298 EELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG--HEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPL 375 (502)
T ss_dssp GGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSE
T ss_pred HHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceE
Confidence 1 10000110 0111 2233444444443 33467778888889999999999985 888765 4554
Q ss_pred EEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 399 FVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
+.+.+......+..++.++|.+ .||.+.
T Consensus 376 -v~f~~~~~~~~~~~~l~~~L~~-~Gi~v~ 403 (502)
T 3hbx_A 376 -VAFSLKDSSCHTEFEISDMLRR-YGWIVP 403 (502)
T ss_dssp -EEEEESSCSSCCHHHHHHHHHT-TTCBCC
T ss_pred -EEEEecCCCcCCHHHHHHHHHh-CCcEEe
Confidence 4455533211245688888865 599753
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-21 Score=192.52 Aligned_cols=286 Identities=15% Similarity=0.144 Sum_probs=197.0
Q ss_pred eeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc
Q 013883 111 AINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL 190 (434)
Q Consensus 111 ~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l 190 (434)
.+++..+.+. .++.+.+++.+++.+. .|.+..+..+++++++++++ .+ ++++++++++++..++.++
T Consensus 3 ~~~~~~~~~~--~~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~--------~~-~~i~~~sGt~a~~~al~~~ 69 (390)
T 3b8x_A 3 MINYPLASST--WDDLEYKAIQSVLDSK--MFTMGEYVKQYETQFAKTFG--------SK-YAVMVSSGSTANLLMIAAL 69 (390)
T ss_dssp --CBCSCCCC--CCHHHHHHHHHHHHHT--CCSSCHHHHHHHHHHHHHHT--------CS-EEEEESCHHHHHHHHHHHT
T ss_pred ceeccCCCCC--CCHHHHHHHHHHHHcC--CCCCChHHHHHHHHHHHHHC--------CC-cEEEECCHHHHHHHHHHHH
Confidence 3444444332 3567778888887763 45566678899999999986 22 4666666678999999998
Q ss_pred -------cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHH
Q 013883 191 -------INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREE 263 (434)
Q Consensus 191 -------~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~ 263 (434)
+++||+|+++.|+|+.+...+...|++++.++.+++++.+|++.+++++++++++|++++ ++|... +
T Consensus 70 ~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~---~ 143 (390)
T 3b8x_A 70 FFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPN---N 143 (390)
T ss_dssp TSSSSCSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCC---C
T ss_pred HhhhhcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEEC---CccChh---h
Confidence 789999999999999999999999999999999875689999999999998899998863 456544 5
Q ss_pred HHHHHHHHHHcCcEEEEcCcCCccc-cCCCCccccCCCCCCCceEEEc--cCChhhccccceeeeEEeCh-hhHHHHHHH
Q 013883 264 LNVIASLCIENDVLVFSDEVYDKLA-FEMDHISIASLPGMYERTVTMN--SLGKTFSLTGWKIGWAIAPP-HLTWGVRQA 339 (434)
Q Consensus 264 l~~i~~la~~~~~~iI~Deay~~~~-~~~~~~~~~~~~~~~~~~i~i~--S~SK~~g~~G~R~G~~~~~~-~~~~~l~~~ 339 (434)
+++|.++|++||+++|+|++|.... +++. .+.... ++... ..+|.++ +| +.|++++++ ++.+.++..
T Consensus 144 ~~~i~~l~~~~~~~li~D~a~~~g~~~~~~-----~~g~~~--~~~~~s~~~~k~~~-~g-~gG~~~~~~~~l~~~~~~~ 214 (390)
T 3b8x_A 144 FDEINKIIGGRDIILLEDNCESMGATFNNK-----CAGTFG--LMGTFSSFYSNHIA-TM-EGGCIVTDDEEIYHILLCI 214 (390)
T ss_dssp HHHHHHHHTTSCCEEEEECTTCTTCEETTE-----ETTSSS--SEEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEECcCcccCEECCc-----cccccc--ceEEEEccCCCCCc-cC-CceEEEeCCHHHHHHHHHH
Confidence 7889999999999999999998532 2211 111111 12222 2345554 33 459999886 666666654
Q ss_pred hhcc-------------------------------ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-
Q 013883 340 HSFL-------------------------------TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV- 387 (434)
Q Consensus 340 ~~~~-------------------------------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 387 (434)
.... .+..+.....++...| +++++..++.+++++.+.+.|+++
T Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l----~~l~~~~~~~~~~~~~l~~~L~~~~ 290 (390)
T 3b8x_A 215 RAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL----KKLPRFISVRRKNAEYFLDKFKDHP 290 (390)
T ss_dssp TBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3211 0113444444444444 456777888888999999999886
Q ss_pred CCEeecC--CeeEE-EeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 388 GFKVFPS--SGTYF-VVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 388 g~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
|+.+..+ ..+++ +++.+......+..++.++|.+ +||.+.+
T Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~-~gI~v~~ 334 (390)
T 3b8x_A 291 YLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNS-AGIECRP 334 (390)
T ss_dssp SEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHH-TTBCCBC
T ss_pred CcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHH-CCCCeee
Confidence 7776543 23432 3444432111246788888855 5999987
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=203.62 Aligned_cols=254 Identities=15% Similarity=0.130 Sum_probs=171.8
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHH----HHHHcCCEEEEEE
Q 013883 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA----TLSMAGAKIKCIT 222 (434)
Q Consensus 147 G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~v~ 222 (434)
...+|++.++++++ .+ ..++++++++|+.+++.+++++||+|++++|.|.++.. .+...|++++.++
T Consensus 83 ~~~~le~~lA~l~g--------~~-~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~ 153 (430)
T 3ri6_A 83 TVEDLEQRLKNLTG--------AL-GVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVD 153 (430)
T ss_dssp HHHHHHHHHHHHHT--------CS-EEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHC--------CC-cEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeC
Confidence 34567777777765 23 34555566799999999999999999999999999877 6678999999998
Q ss_pred cCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCC
Q 013883 223 LRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM 302 (434)
Q Consensus 223 ~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~ 302 (434)
.+ |++.+++++++++++|++++|+||||.+++ +++|+++|+++|+++|+|++|....+. ... .
T Consensus 154 ~~------d~~~l~~ai~~~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~----~~~----~ 216 (430)
T 3ri6_A 154 VM------DSLAVEHACDETTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLL----EAK----R 216 (430)
T ss_dssp TT------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTC----CGG----G
T ss_pred CC------CHHHHHHhhCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC----ChH----H
Confidence 66 799999999999999999999999999985 667999999999999999999864321 111 1
Q ss_pred CCceEEEccCChhhccccceee-eEEe--Chhh------------------HHHHHH-HhhccccCCchHHHHHHHHHHh
Q 013883 303 YERTVTMNSLGKTFSLTGWKIG-WAIA--PPHL------------------TWGVRQ-AHSFLTFATSTPMQWAATAALR 360 (434)
Q Consensus 303 ~~~~i~i~S~SK~~g~~G~R~G-~~~~--~~~~------------------~~~l~~-~~~~~~~~~~~~~q~a~~~~L~ 360 (434)
.+.++++.|++|.++.+|..+| +++. +..+ +..++. .........+....+.+...|
T Consensus 217 ~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l- 295 (430)
T 3ri6_A 217 LGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGL- 295 (430)
T ss_dssp GTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHH-
T ss_pred cCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhh-
Confidence 2345899999999985655554 4442 2222 222221 111122233333333333333
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhC-CCE-eecCC----------------eeEEEeeecCCCCCCCHHHHHHHHHHh
Q 013883 361 APETYYEELKRDYSAKKAILVEGLNAV-GFK-VFPSS----------------GTYFVVVDHTPFGHETDIAFCEYLIKE 422 (434)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 422 (434)
+.+....++..++...+.+.|++. ++. +.-|. |++++++.+. +.....+|.+.| +.
T Consensus 296 ---~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~--~~~~~~~~~~~l-~~ 369 (430)
T 3ri6_A 296 ---ETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELE--SKEASYRFMDAL-KL 369 (430)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--SHHHHHHHHHHC-SS
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEEC--CHHHHHHHHHhC-Cc
Confidence 234555566778888888888875 454 33333 6656777774 211233444444 33
Q ss_pred cCeEEECCCCC
Q 013883 423 VGVVAIPTSVF 433 (434)
Q Consensus 423 ~GV~v~pG~~F 433 (434)
.++.+.+|..|
T Consensus 370 ~~~~~s~G~~~ 380 (430)
T 3ri6_A 370 IRRATNIHDNK 380 (430)
T ss_dssp SEECSCCSCSS
T ss_pred ceecCCCCCCC
Confidence 46677777654
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=205.28 Aligned_cols=306 Identities=15% Similarity=0.118 Sum_probs=189.9
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCC-CCCCCC---CC---cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGK-NQYARG---HG---VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~-~~Y~~~---~G---~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+.|+|-.+ |++ .++.|++++...+.+.. .+|+.. .| ..+|++...+.+.+.+|.+.+.-...++++++++|
T Consensus 55 ~~i~lias-~n~-~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~A 132 (490)
T 2a7v_A 55 RGLELIAS-ENF-CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPA 132 (490)
T ss_dssp HSEECCTT-CCC-CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHH
T ss_pred cCceEECC-CCC-CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHH
Confidence 45666543 333 57888888877665432 233321 12 23667555667776676542100013445577999
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHHH--------HHHHcCCEEEEE--EcCCCCCCCCHHHHHhhccc-CCcEEEecCC
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYEA--------TLSMAGAKIKCI--TLRPPDFAIPIEELKSTISK-NTRAILMNTP 251 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~G~~~~~v--~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p 251 (434)
+..++.++++|||+|++.++.|.++.. .+...|..+..+ +++++++.+|++.+++++.. ++++|+++.+
T Consensus 133 n~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s 212 (490)
T 2a7v_A 133 NLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTS 212 (490)
T ss_dssp HHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCS
T ss_pred HHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCC
Confidence 999999999999999999998876431 233456544444 44555789999999999864 7899998889
Q ss_pred CCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCC-ccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeCh
Q 013883 252 HNPTGKMFTREELNVIASLCIENDVLVFSDEVYD-KLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP 330 (434)
Q Consensus 252 ~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~-~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~ 330 (434)
+||+. . ++++|.++|++||+++++|+++. ++.+.+..... +. ...+++.|++|+++ |+|.|++++++
T Consensus 213 ~~~~~--~---dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~--~~---~aDiv~~S~hK~l~--Gp~GG~i~~~~ 280 (490)
T 2a7v_A 213 AYARL--I---DYARMREVCDEVKAHLLADMAHISGLVAAKVIPSP--FK---HADIVTTTTHKTLR--GARSGLIFYRK 280 (490)
T ss_dssp SCCSC--C---CHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCG--GG---TCSEEEEESSGGGC--SCSCEEEEEEC
T ss_pred CCCCc--c---cHHHHHHHHHHcCCEEEEccccccccccCCcCCCC--CC---CCCEEEECCcccCc--cccchheeecc
Confidence 98853 3 47889999999999999999975 44433322211 11 23478899999984 78889999976
Q ss_pred h---------------hHHHHHHHhhccccC-CchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCEeec
Q 013883 331 H---------------LTWGVRQAHSFLTFA-TSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFKVFP 393 (434)
Q Consensus 331 ~---------------~~~~l~~~~~~~~~~-~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 393 (434)
+ +.+.++........+ ++.....++..++... .+..++..+++.++++++.+.|.+.|+++..
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~ 360 (490)
T 2a7v_A 281 GVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVS 360 (490)
T ss_dssp SEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGG
T ss_pred chhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCcEEec
Confidence 4 556666554333333 3333333444455432 2234777888899999999999999999875
Q ss_pred -CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 394 -SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 394 -~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
...++++|+++.+.+. +..++.+ ++++.||.+.++.
T Consensus 361 ~~t~t~lv~vdl~~~g~-~~~~~~~-~L~~~GI~v~~~~ 397 (490)
T 2a7v_A 361 GGTDNHLVLVDLRPKGL-DGARAER-VLELVSITANKNT 397 (490)
T ss_dssp GSCSSSEEEEECTTTTC-CHHHHHH-HHHHTTEECEEEC
T ss_pred CCCCCeEEEEEeCCCCC-CHHHHHH-HHHhCCeEEecCc
Confidence 3456788898866554 4555555 4567799998543
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-25 Score=226.86 Aligned_cols=299 Identities=17% Similarity=0.138 Sum_probs=200.4
Q ss_pred cCCeeEeCCCCCC--CC-CcHHHHHHHHHHHHcCC-CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 108 KHGAINLGQGFPN--FD-GPDFVKDAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 108 ~~~~i~l~~g~p~--~~-~~~~v~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
+...|||..|.-. +. .+|.+.+++.+++.++. ..|. .....+|.+.+++++. ..+ .+++++++++|+
T Consensus 99 G~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~~~~~-~~~~~~Lae~L~~~~p-------~~~-~v~~~nSGseA~ 169 (465)
T 2yky_A 99 GHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQ-TENEALFAEAVCDRFP-------SID-LVRFTNSGTEAN 169 (465)
Confidence 4467888777431 22 36788888888877642 2332 2233456666666542 135 799999999999
Q ss_pred HHHHHHcc--CCCCeEEEcCCCchhHHHHHH----HcCC--EEEEEEcCCCCCCCCHHHHHhhcc---cCCcEEEecCCC
Q 013883 184 AATILGLI--NPGDEVILFAPFYDSYEATLS----MAGA--KIKCITLRPPDFAIPIEELKSTIS---KNTRAILMNTPH 252 (434)
Q Consensus 184 ~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~----~~G~--~~~~v~~~~~~~~~d~~~l~~~i~---~~~~~i~~~~p~ 252 (434)
..+++.+. ..+|+|++.+++|+++...+. ..|. .++.+|+ -|++.++++++ +++++|+++..+
T Consensus 170 ~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~------~d~~~l~~~l~~~~~~~aavi~epv~ 243 (465)
T 2yky_A 170 LMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY------NDVEGTADLLKRHGHDCAAILVEPML 243 (465)
Confidence 99988753 455899999999988765433 1233 2233332 27889999887 577888876556
Q ss_pred CCcccCC-CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh
Q 013883 253 NPTGKMF-TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH 331 (434)
Q Consensus 253 NPTG~~~-~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~ 331 (434)
|++|.++ +.+.+++|.++|++||+++|+||+|. +.. +.......+ +....+.||||.+| .|+|+||++++++
T Consensus 244 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~-g~~~a~~~~----gv~pDi~t~sK~lg-~G~piG~v~~~~~ 316 (465)
T 2yky_A 244 GAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRL-SGGGAQEML----GISADLTTLGKYIG-GGMSFGAFGGRRD 316 (465)
Confidence 7799654 67789999999999999999999999 743 222122111 12233569999999 5999999999999
Q ss_pred hHHHHHH-----HhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC----CCEeecCCeeEEEee
Q 013883 332 LTWGVRQ-----AHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV----GFKVFPSSGTYFVVV 402 (434)
Q Consensus 332 ~~~~l~~-----~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~ 402 (434)
+++.+.. .....+++.+++++.++.++|+..++ +.+.++++++.+.+++.|+++ ++....+..|.++++
T Consensus 317 i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i 394 (465)
T 2yky_A 317 LMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYT--RQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTI 394 (465)
Confidence 9988876 23446788899999999888875322 234556666666666666553 332223344545566
Q ss_pred ecCCCC-----------CCCHHHHHHHHHHhcCeEEECCC
Q 013883 403 DHTPFG-----------HETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 403 ~~~~~~-----------~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
.+.... .+....++++|++ .||++.|+.
T Consensus 395 ~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~GV~v~p~~ 433 (465)
T 2yky_A 395 HFSRAPIRSAGDVRAADQQLKELFFFHMLR-KGIYLAPRG 433 (465)
Confidence 553200 0114568888876 499999975
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=200.23 Aligned_cols=210 Identities=14% Similarity=0.160 Sum_probs=159.3
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHH----HHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATL----SMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~ 223 (434)
..+|++.++++++ .+ ++++++|+++++.+++.+++++||+|+++.|.|++....+ +..|+++..++.
T Consensus 84 ~~~le~~lA~l~g--------~~-~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~ 154 (415)
T 2fq6_A 84 HFSLQQAMCELEG--------GA-GCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDP 154 (415)
T ss_dssp HHHHHHHHHHHHT--------CS-EEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred HHHHHHHHHHHhC--------CC-eEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECC
Confidence 3467788877765 23 4666788899999999999999999999999999877654 457999988865
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHH--cCcEEEEcCcCCccccCCCCccccCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIE--NDVLVFSDEVYDKLAFEMDHISIASLPG 301 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~--~~~~iI~Deay~~~~~~~~~~~~~~~~~ 301 (434)
+ |++++++++++++++|++++|+||||.+++ +++|+++|++ +|+++|+|++|...... . ++ .
T Consensus 155 ~------d~~~le~ai~~~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~~-~--p~-~--- 218 (415)
T 2fq6_A 155 L------IGADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLF-K--AL-D--- 218 (415)
T ss_dssp T------CGGGGGGGCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSS-C--GG-G---
T ss_pred C------CHHHHHHhhccCCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCcccccC-C--cc-c---
Confidence 4 789999999999999999999999999995 6779999999 99999999999864321 1 11 1
Q ss_pred CCCceEEEccCChhhccccce-eeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 013883 302 MYERTVTMNSLGKTFSLTGWK-IGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAIL 380 (434)
Q Consensus 302 ~~~~~i~i~S~SK~~g~~G~R-~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l 380 (434)
.+.++++.|++|.+|.+|.+ +||+++++++++.++..........+....+++...|+ .+....++..++...+
T Consensus 219 -~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~----~l~~r~~~~~~n~~~l 293 (415)
T 2fq6_A 219 -FGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLR----TLGVRLRQHHESSLKV 293 (415)
T ss_dssp -GTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred -cCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh----HHHHHHHHHHHHHHHH
Confidence 23468999999999977765 69999999888888766543333344444444444443 3444455566677777
Q ss_pred HHHhhhC
Q 013883 381 VEGLNAV 387 (434)
Q Consensus 381 ~~~L~~~ 387 (434)
.+.|++.
T Consensus 294 ~~~L~~~ 300 (415)
T 2fq6_A 294 AEWLAEH 300 (415)
T ss_dssp HHHHHTC
T ss_pred HHHHHcC
Confidence 7777765
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-23 Score=207.48 Aligned_cols=260 Identities=12% Similarity=0.100 Sum_probs=171.3
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEE
Q 013883 142 YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCI 221 (434)
Q Consensus 142 Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v 221 (434)
|.+...+.++++.+++ ++ . + + ++++++|+++++.+++.+++++||+|+++.|+|..+...+...|++++.+
T Consensus 53 ~~~~~~~~~~~~~la~-~g----~--~-~-~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v 123 (446)
T 2x3l_A 53 HHPEEVILKSMKQVEK-HS----D--Y-D-GYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGHFI 123 (446)
T ss_dssp TSCSSHHHHHHHHHCS-CT----T--E-E-EEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHTCCEEEC
T ss_pred cCcchHHHHHHHHHHh-cC----C--C-c-eEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcCCeEEEE
Confidence 3444445566666666 43 2 2 4 79999999999999999999999999999999999999999999999998
Q ss_pred Ec--CCCC----CCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCc-cccCCCCc
Q 013883 222 TL--RPPD----FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDK-LAFEMDHI 294 (434)
Q Consensus 222 ~~--~~~~----~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~-~~~~~~~~ 294 (434)
+. ++ + +.+|++.+ +.+++++|++++ +|+||.+.+ +++|+++|++||+++|+||+|.. +.|.+...
T Consensus 124 ~~~~~~-~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f~~~~~ 195 (446)
T 2x3l_A 124 ETHQSP-LTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPD 195 (446)
T ss_dssp EEEECT-TTSSEEEEEC----------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTSTTSCC
T ss_pred eCeecc-ccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhccCCCCC
Confidence 88 43 3 45788877 456889999988 566999986 66799999999999999999986 33444311
Q ss_pred cccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHH--HHHHHhh-ccccCCchHHHHHHHHHHhCChHH-HHHHH
Q 013883 295 SIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTW--GVRQAHS-FLTFATSTPMQWAATAALRAPETY-YEELK 370 (434)
Q Consensus 295 ~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~--~l~~~~~-~~~~~~~~~~q~a~~~~L~~~~~~-~~~~~ 370 (434)
....+ +..+++.|++|.++ ++.++||+++++++++ .++.... ....+++.....++..+++..+++ .+++.
T Consensus 196 ~~~~~----g~Di~~~S~~K~l~-~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~ 270 (446)
T 2x3l_A 196 STLNY----QADYVVQSFHKTLP-ALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDSTLFF 270 (446)
T ss_dssp CGGGG----TCSEEEECHHHHSS-SCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred ChHHc----CCCEEEECCccccc-cccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHH
Confidence 22222 12488999999764 3445899999877654 3322211 122333333332322233211110 11134
Q ss_pred HHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE-CCC
Q 013883 371 RDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI-PTS 431 (434)
Q Consensus 371 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~-pG~ 431 (434)
++.+++++.+++. |+++..+..+.++|+.+. +. +..+++++|.++ ||.+. +|.
T Consensus 271 ~~~~~l~~~l~~~----g~~~~~~~~~~~l~i~~~--~~-~~~~l~~~L~~~-GI~v~~~g~ 324 (446)
T 2x3l_A 271 AKRAQLIECLENK----GFEMLQVDDPLKLLIKYE--GF-TGHDIQNWFMNA-HIYLELADD 324 (446)
T ss_dssp HHHHHHHHHHHHH----TCEEEECSSTTEEEEECT--TS-CHHHHHHHHHHT-TEEESEECS
T ss_pred HHHHHHHHHHHHc----CCEECcCCCCeEEEEEeC--Cc-CHHHHHHHHHHC-CCEEEecCC
Confidence 4444455555544 788776654446777764 32 577888888776 99998 664
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-22 Score=197.05 Aligned_cols=264 Identities=13% Similarity=0.093 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHH--HHHHHcC--CEEEEEEcCC
Q 013883 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYE--ATLSMAG--AKIKCITLRP 225 (434)
Q Consensus 150 ~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~--~~~~~~G--~~~~~v~~~~ 225 (434)
++.+++++.+.+..|.+ + .+++++|+++++.+++.. +++||+|++.++.|+++. ..+...| .+++.++.+.
T Consensus 35 ~~~~~~~~~l~~~~~~~---~-~v~~~~sgt~a~~~~~~~-~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 109 (379)
T 3ke3_A 35 EVMNDLLSNLKTVYNAE---A-AVIIPGSGTYGMEAVARQ-LTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAER 109 (379)
T ss_dssp HHHHHHHHHHHHHHTCS---E-EEEEESCHHHHHHHHHHH-HCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEE
T ss_pred HHHHHHHHHHHHHhCCC---C-EEEEcCChhHHHHHHHHh-CCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEeccc
Confidence 45555555555555543 4 799999999999998754 579999999999998753 3455566 4777777643
Q ss_pred C-------C-CCCCHHHHHhhcc-cCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccc
Q 013883 226 P-------D-FAIPIEELKSTIS-KNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISI 296 (434)
Q Consensus 226 ~-------~-~~~d~~~l~~~i~-~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~ 296 (434)
. . ..+|++.++++++ .++++|++++++||||.+++.+++++|.++|++||+++|+|+++. . +....+
T Consensus 110 ~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g---~~~~~~ 185 (379)
T 3ke3_A 110 TEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G---CVWLDM 185 (379)
T ss_dssp SSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T---TCCCCH
T ss_pred cccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C---Cccccc
Confidence 1 1 2589999999996 489999999999999999999999999999999999999999976 2 222222
Q ss_pred cCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhh--------------------c--cccCCchHHHHH
Q 013883 297 ASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHS--------------------F--LTFATSTPMQWA 354 (434)
Q Consensus 297 ~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~--------------------~--~~~~~~~~~q~a 354 (434)
.. .+..+++.|++|.++ .+.++|++++++++++.+..... . ..++++...+.+
T Consensus 186 ~~----~~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a 260 (379)
T 3ke3_A 186 KE----LGIDVLISAPQKGWS-STPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQ 260 (379)
T ss_dssp HH----HTCSEEEECTTTTTC-SCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHH
T ss_pred cc----cCCCEEEecchhhcC-CCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHH
Confidence 11 133578899999987 44569999999998877653110 0 123667777777
Q ss_pred HHHHHhCChH-HHHHHHHHHHHHHHHHHHHhhhCCCEeecCC---eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 355 ATAALRAPET-YYEELKRDYSAKKAILVEGLNAVGFKVFPSS---GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 355 ~~~~L~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
+.++|+...+ .+++++++++++++++++.|+++|+.+..+. .+....+... + ....+...| +++||.+.||
T Consensus 261 ~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~--~--~~~~~~~~L-~~~Gi~v~~g 335 (379)
T 3ke3_A 261 FRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTE--R--DDMHKGSAF-AEAGLQIAAG 335 (379)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECS--C--HHHHSSHHH-HHTTCCCEEC
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccC--C--cchHHHHHH-HHCCeEEeCC
Confidence 7777765332 2677888999999999999999998876543 2222222221 1 122234555 5569999998
Q ss_pred CC
Q 013883 431 SV 432 (434)
Q Consensus 431 ~~ 432 (434)
..
T Consensus 336 ~~ 337 (379)
T 3ke3_A 336 VP 337 (379)
T ss_dssp CC
T ss_pred cc
Confidence 64
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.7e-22 Score=201.05 Aligned_cols=289 Identities=13% Similarity=0.080 Sum_probs=203.4
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCC-------CCCcEEEcCChHHHHHHHHHHccCC---
Q 013883 124 PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVD-------PEKEVTVTSGCTEAIAATILGLINP--- 193 (434)
Q Consensus 124 ~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~-------~~~~i~~t~G~~~ai~~~~~~l~~~--- 193 (434)
+..+.+.+..++......|....+..++++.+++++.+.+|.+.+ .. .+++|+|+++++..++.++.++
T Consensus 87 ~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-~~v~t~ggTeA~~~al~~~~~~~~~ 165 (486)
T 1js3_A 87 PAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEG-GGVIQGSASEATLVALLAARTKVVR 165 (486)
T ss_dssp HHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSC-EEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCC-CeEEcCCcHHHHHHHHHHHHHHHhh
Confidence 345666666666544456666556789999999999999887632 23 6899999999998888765421
Q ss_pred ------CC--------e--EEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCc------EEEecCC
Q 013883 194 ------GD--------E--VILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTR------AILMNTP 251 (434)
Q Consensus 194 ------gd--------~--Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~------~i~~~~p 251 (434)
|| + |+++.+.|..+...+..+|++++.+|.+ +++.+|++.|+++++++++ +|++++|
T Consensus 166 ~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d-~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~ 244 (486)
T 1js3_A 166 RLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD-GKFAMRASALQEALERDKAAGLIPFFVVATLG 244 (486)
T ss_dssp HHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBS
T ss_pred hhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecC-CCCCCCHHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 43 3 7889999999999999999999999987 4789999999999987653 7888999
Q ss_pred CCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC-CCccc-cCCCCCCCceEEEccCChhhccccceeeeEEeC
Q 013883 252 HNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM-DHISI-ASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP 329 (434)
Q Consensus 252 ~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~-~~~~~-~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~ 329 (434)
+||||.+- ++++|+++|++||+++++|++|.++.+.. +.... ..+ .+-..+..+++|.++.+ +++|+++++
T Consensus 245 ~n~tG~~~---~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~---~~adsi~~~~hK~~~~p-~~~G~l~~~ 317 (486)
T 1js3_A 245 TTSCCSFD---NLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGV---EFADSFNFNPHKWLLVN-FDCSAMWVK 317 (486)
T ss_dssp CTTTCCBC---CHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTG---GGCSEEEECHHHHSSCC-SSCEEEEES
T ss_pred CCCCCCCC---CHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCc---cccCeeEEchhhhcCCC-cceEEEEEe
Confidence 99999874 57789999999999999999999865432 12111 111 11234567889999854 899999997
Q ss_pred hhh--HHHHHHHhhcc--------------------ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC
Q 013883 330 PHL--TWGVRQAHSFL--------------------TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 330 ~~~--~~~l~~~~~~~--------------------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (434)
.+. .+.+.....+. ......+.+.++...+. .++++++.+++.++++++.+.|++.
T Consensus 318 ~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g--~~g~~~~~~~~~~~a~~l~~~L~~~ 395 (486)
T 1js3_A 318 RRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG--VKGLQAYIRKHVQLSHEFEAFVLQD 395 (486)
T ss_dssp CHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 542 22221100000 00123445555555553 4578888899999999999999987
Q ss_pred -CCEee-cCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 388 -GFKVF-PSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 388 -g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
|+++. +++.+++.| .+.+.. ....++.++|.++ |+.
T Consensus 396 ~~~~~~~~~~~~~v~f-~~~~~~-~~~~~l~~~L~~~-g~~ 433 (486)
T 1js3_A 396 PRFEVCAEVTLGLVCF-RLKGSD-GLNEALLERINSA-RKI 433 (486)
T ss_dssp TTEEECSCCCSSEEEE-EESSCH-HHHHHHHHHHHHH-TSC
T ss_pred CCeEEeCCCceeEEEE-EecChH-HHHHHHHHHHHhc-CCE
Confidence 88876 466676655 332110 0146788888766 644
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-21 Score=189.34 Aligned_cols=208 Identities=15% Similarity=0.196 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHH-----HHcCCEEEEEEc
Q 013883 149 PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATL-----SMAGAKIKCITL 223 (434)
Q Consensus 149 ~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~-----~~~G~~~~~v~~ 223 (434)
.+|++.++++.+ .+ +.++++++++|+.. +..++++||+|++++|.|++....+ ...|++++.++.
T Consensus 70 ~~l~~~la~l~g--------~~-~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 139 (400)
T 3nmy_A 70 FAYERCVAALEG--------GT-RAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDL 139 (400)
T ss_dssp HHHHHHHHHHHT--------CS-EEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECT
T ss_pred HHHHHHHHHHhC--------CC-CEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECC
Confidence 456666666554 23 45666666999997 5678999999999999999765554 346999999876
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 224 RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 224 ~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
+ |++.+++++++++++|++++|+||||.+++ +++|+++|++||+++|+||+|....+. . ++ . .
T Consensus 140 ~------d~~~l~~~i~~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~-~--~~-~----~ 202 (400)
T 3nmy_A 140 T------DPAAFKAAIRADTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQ-R--PL-S----L 202 (400)
T ss_dssp T------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC-C--GG-G----G
T ss_pred C------CHHHHHHHhccCCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccC-C--hh-h----c
Confidence 5 799999999999999999999999999995 778999999999999999999854322 1 11 1 2
Q ss_pred CceEEEccCChhhccccceeee--EE-eChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSLTGWKIGW--AI-APPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAIL 380 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G~R~G~--~~-~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l 380 (434)
+.++++.|++|.++.+|.++|. ++ .++++.+.++........+.++...+++...|+. +....++..++...+
T Consensus 203 g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~----l~~r~~~~~~~a~~l 278 (400)
T 3nmy_A 203 GADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKT----LPLRMRAHCENALAL 278 (400)
T ss_dssp TCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHH
T ss_pred CCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhH----HHHHHHHHHHHHHHH
Confidence 3558999999999877777755 33 3677888888777666667777777777777765 344456667777888
Q ss_pred HHHhhhC
Q 013883 381 VEGLNAV 387 (434)
Q Consensus 381 ~~~L~~~ 387 (434)
.+.|++.
T Consensus 279 ~~~L~~~ 285 (400)
T 3nmy_A 279 AQWLETH 285 (400)
T ss_dssp HHHHTTC
T ss_pred HHHHHcC
Confidence 8888765
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-21 Score=198.22 Aligned_cols=288 Identities=10% Similarity=0.048 Sum_probs=203.9
Q ss_pred HHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccC--------CC-----C
Q 013883 129 DAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLIN--------PG-----D 195 (434)
Q Consensus 129 ~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~--------~g-----d 195 (434)
+.+...+......|....+..++++.+.+++.+..|.+.+++ ++++++|+++++..++.++.. +| +
T Consensus 111 ~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~-~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~ 189 (504)
T 2okj_A 111 EWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDG-DGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPK 189 (504)
T ss_dssp HHHHHHHCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSC-EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCC
T ss_pred HHHHHhhccCCCchhhChHHHHHHHHHHHHHHHHhCCCCCCC-CEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCC
Confidence 444333333334565555567788888888888888754455 899999999999999888753 56 6
Q ss_pred -eEEEcCCCchhHHHHHHHcCC---EEEEEEcCCCCCCCCHHHHHhhccc------CCcEEEecCCCCCcccCCCHHHHH
Q 013883 196 -EVILFAPFYDSYEATLSMAGA---KIKCITLRPPDFAIPIEELKSTISK------NTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 196 -~Vlv~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
.|+++.+.|+.+...+..+|. +++.+|.++ ++.+|++.|++++++ ++++|++++|+||||.+.+ ++
T Consensus 190 ~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~ 265 (504)
T 2okj_A 190 LVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNE-RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQ 265 (504)
T ss_dssp EEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT-TSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HH
T ss_pred eEEEECCcchHHHHHHHHHcCCCcccEEEEecCC-CCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HH
Confidence 789999999999999998887 899999874 789999999999976 5789999999999999864 67
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeCh-hhHHHHHH-Hhhcc
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP-HLTWGVRQ-AHSFL 343 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~-~~~~~l~~-~~~~~ 343 (434)
+|+++|++||+++++|++|.++.+...... ..+.+.....+++.+++|.++.+ .++|++++++ +++..... ...+.
T Consensus 266 ~I~~la~~~g~~lhvD~a~~~~~~~~~~~~-~~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~~~~~l 343 (504)
T 2okj_A 266 EIADICEKYNLWLHVDAAWGGGLLMSRKHR-HKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMCAGYL 343 (504)
T ss_dssp HHHHHHHHHTCEEEEEETTGGGGGGCTTTG-GGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCSSS
T ss_pred HHHHHHHHcCCEEEEehhhhhHHHhCHhhH-hhcCCcccCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcCCCccc
Confidence 799999999999999999998765321110 11121112236778999999844 7899999976 45543211 11111
Q ss_pred cc--------------------CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeec---CCeeEE
Q 013883 344 TF--------------------ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFP---SSGTYF 399 (434)
Q Consensus 344 ~~--------------------~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~---~~~~~~ 399 (434)
.. ....+.++++..++. .+.++++.++..++++++.+.|++. |+++.. +..+++
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg--~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v 421 (504)
T 2okj_A 344 FQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG--TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNV 421 (504)
T ss_dssp CCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCE
T ss_pred cCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEE
Confidence 00 113456666666665 4567888889999999999999986 888874 667777
Q ss_pred EeeecCCC--CCC-----------CHHHHHHHHHHhcCeE
Q 013883 400 VVVDHTPF--GHE-----------TDIAFCEYLIKEVGVV 426 (434)
Q Consensus 400 ~~~~~~~~--~~~-----------~~~~~~~~Ll~~~GV~ 426 (434)
+|...+.. +.. ...++.++|.++ |+.
T Consensus 422 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~ 460 (504)
T 2okj_A 422 CFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTT 460 (504)
T ss_dssp EEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHH-TSC
T ss_pred EEEEeCccccccccchhhHHHHHHHHHHHHHHHHhC-CcE
Confidence 66433210 100 134677778766 753
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-21 Score=199.31 Aligned_cols=269 Identities=11% Similarity=0.054 Sum_probs=199.0
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccC-----------
Q 013883 124 PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLIN----------- 192 (434)
Q Consensus 124 ~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~----------- 192 (434)
+..+.+.+..++......|....+..++++.+++++.+.+|.+.+++ .+++++|+++++..++.++.+
T Consensus 109 ~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~-~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~ 187 (511)
T 3vp6_A 109 IGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDG-DGIFSPGGAISNMYSIMAARYKYFPEVKTKGM 187 (511)
T ss_dssp HHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSC-EEEEESSHHHHHHHHHHHHHHHHCTHHHHHCG
T ss_pred HHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCC-ceEECCchHHHHHHHHHHHHHHhhhhhhhcCc
Confidence 34455666666666567788777888999999999999999876566 799999999999888877654
Q ss_pred ---CCCeEEEcCCCchhHHHHHHHcCC---EEEEEEcCCCCCCCCHHHHHhhcccC------CcEEEecCCCCCcccCCC
Q 013883 193 ---PGDEVILFAPFYDSYEATLSMAGA---KIKCITLRPPDFAIPIEELKSTISKN------TRAILMNTPHNPTGKMFT 260 (434)
Q Consensus 193 ---~gd~Vlv~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~d~~~l~~~i~~~------~~~i~~~~p~NPTG~~~~ 260 (434)
+++.|+++.+.|..+...+..+|+ +++.++.++ ++.+|++.|+++++++ +++|+++.|+||||.+-
T Consensus 188 ~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~-~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd- 265 (511)
T 3vp6_A 188 AAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNE-RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD- 265 (511)
T ss_dssp GGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT-TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBC-
T ss_pred ccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCC-CCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccc-
Confidence 577899999999999999999998 899999875 6899999999999764 78899999999999985
Q ss_pred HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh-hHHHHHHH
Q 013883 261 REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH-LTWGVRQA 339 (434)
Q Consensus 261 ~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~-~~~~l~~~ 339 (434)
++++|+++|++||+|+++|++|........... ..+.+...-.+++.+++|.++.+ ..+|+++.+.+ .+......
T Consensus 266 --~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~-~~~~g~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~ 341 (511)
T 3vp6_A 266 --PIQEIADICEKYNLWLHVDAAWGGGLLMSRKHR-HKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQM 341 (511)
T ss_dssp --CHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG-GGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCC
T ss_pred --cHHHHHHHHHHcCCEEEEEccchhhHhhChhhh-hhccCCccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhcc
Confidence 578899999999999999999987654221111 01111112246678999999844 66888887643 44433211
Q ss_pred h-hccc--------------c------CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeec---C
Q 013883 340 H-SFLT--------------F------ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFP---S 394 (434)
Q Consensus 340 ~-~~~~--------------~------~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~---~ 394 (434)
. .+.. + ........++..++ ..+++++++++..++.+++.+.|++. |+++.. +
T Consensus 342 ~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~--g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p 419 (511)
T 3vp6_A 342 HASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK--GTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEP 419 (511)
T ss_dssp CCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCC
T ss_pred CCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 0 0000 0 01233344444444 35678889999999999999999986 888875 5
Q ss_pred CeeEEEe
Q 013883 395 SGTYFVV 401 (434)
Q Consensus 395 ~~~~~~~ 401 (434)
..+.++|
T Consensus 420 ~~~~v~f 426 (511)
T 3vp6_A 420 EHTNVCF 426 (511)
T ss_dssp SSSCEEE
T ss_pred CeEEEEE
Confidence 5665544
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-22 Score=200.43 Aligned_cols=261 Identities=16% Similarity=0.121 Sum_probs=183.8
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH-HHHHHHHHHccC--CCCeEEEcCCCchhHHHHHHHcCCEEEEEEcC
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT-EAIAATILGLIN--PGDEVILFAPFYDSYEATLSMAGAKIKCITLR 224 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~-~ai~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~ 224 (434)
..++.+++.+++.+.+|.+ + .+++|+|++ .++..++.++.. +|+.|+++++.|..+...++..|++++.++..
T Consensus 131 ~~~~~~~~~~~la~~~g~~--~--~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~ 206 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLN--V--HAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETV 206 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCC--C--EEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCE
T ss_pred HHHHHHHHHHHHHHHcCCC--C--CEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEe
Confidence 4567777777787777753 2 299999999 466555555433 67889999999999999999999999999873
Q ss_pred --CCCCCCCHHHHHhhc-c----cCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCcccc
Q 013883 225 --PPDFAIPIEELKSTI-S----KNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIA 297 (434)
Q Consensus 225 --~~~~~~d~~~l~~~i-~----~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~ 297 (434)
++++.+|++.+++++ + .++++|++++|+||||.+.+ +++|+++|+++|+++++|++|..+..+.......
T Consensus 207 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~ 283 (456)
T 2z67_A 207 LDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKK 283 (456)
T ss_dssp EETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHH
T ss_pred ccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHH
Confidence 246789999999999 5 36677778999999999974 6678899999999999999998765421111111
Q ss_pred CCCCCCCceEEEccCChhhccccceeeeEEe-ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 013883 298 SLPGMYERTVTMNSLGKTFSLTGWKIGWAIA-PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAK 376 (434)
Q Consensus 298 ~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~ 376 (434)
.+.+ ...+++.|++|.++ .++++||+++ ++++++.+...........+...+.++...+. .++++++.+++.++
T Consensus 284 ~~~~--~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~--~~~~~~~~~~~~~~ 358 (456)
T 2z67_A 284 AFKY--RVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG--SKNYLELVKNQKNS 358 (456)
T ss_dssp HHTS--CCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred hhCC--CCCEEEEcCCCCcC-CCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 1111 22367889999775 6789999999 57777766332211111122344555555553 45678888999999
Q ss_pred HHHHHHHhhhC----CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCe
Q 013883 377 KAILVEGLNAV----GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGV 425 (434)
Q Consensus 377 ~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV 425 (434)
++++.+.|++. |+.+.+++ ++ +++.+...+ ...++.++|.++ ||
T Consensus 359 ~~~l~~~L~~~~~~~g~~v~~~~-~~-v~~~~~~~~--~~~~l~~~L~~~-gi 406 (456)
T 2z67_A 359 KKLLDELLNDLSKKTGGKFLDVE-SP-IASCISVNS--DPVEIAAKLYNL-RV 406 (456)
T ss_dssp HHHHHHHHHHHHHHSSCCBCCCC-CS-SEEEEECSS--CHHHHHHHHHHT-TE
T ss_pred HHHHHHHHHhcccccCCEecCCC-Ce-EEEEEeccc--HHHHHHHHHHHc-CC
Confidence 99999999886 88777776 43 344441111 146788888765 64
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=195.37 Aligned_cols=290 Identities=17% Similarity=0.202 Sum_probs=188.1
Q ss_pred eEeCCCCCCCCCcHHHHHHHH--HHHHcCCCCCCC-----CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 112 INLGQGFPNFDGPDFVKDAAI--QAIRDGKNQYAR-----GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 112 i~l~~g~p~~~~~~~v~~~~~--~~~~~~~~~Y~~-----~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
..++.|.++...|+.+.+.+. +... .|.+ ..|..++.+++.+.+.+..|. +++ ++++++|++.+.+
T Consensus 67 ~~~~~g~~~~~~p~~v~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~la~~~g~--~~~-~i~~~~g~taa~e 139 (438)
T 1wyu_A 67 AFLGGGVRSHHVPPVVQALAARGEFLT----AYTPYQPEVSQGVLQATFEYQTMIAELAGL--EIA-NASMYDGATALAE 139 (438)
T ss_dssp CCCCSSCCCCCCCHHHHHHHTSHHHHH----CCSCCSGGGCHHHHHHHHHHHHHHHHHHTS--SEE-CSCBSSHHHHHHH
T ss_pred cccCCCccCCcCcHHHHHHHhcchhhh----cCCCCcchhhhhHHHHHHHHHHHHHHHhCC--Ccc-ceEEeCcHHHHHH
Confidence 466778877777777654441 2222 2443 345556666666666666665 355 6899999994444
Q ss_pred HHHHH-ccCCCCeEEEcCCCchhHHHHH----HHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCC
Q 013883 185 ATILG-LINPGDEVILFAPFYDSYEATL----SMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMF 259 (434)
Q Consensus 185 ~~~~~-l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~ 259 (434)
.++.+ ..++||+|+++.+.|+.+...+ +..|++++.++.. ++.+|++. +++++++|++++| ||||.+.
T Consensus 140 a~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~--~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~ 212 (438)
T 1wyu_A 140 GVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLE--GGRTPLPE----VGEEVGAVVVQNP-NFLGALE 212 (438)
T ss_dssp HHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCB--TTBCCCCC----CCTTEEEEEEESS-CTTSBCC
T ss_pred HHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCc--CCccCHHH----hCCCeEEEEEECC-CCCeEEe
Confidence 33333 2578999999999999987655 4489999999873 56777766 6778999999999 9999998
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcCc---CCccccCCCCccccCCCCCCCceEEEccCChhh----ccccceeeeEEeChhh
Q 013883 260 TREELNVIASLCIENDVLVFSDEV---YDKLAFEMDHISIASLPGMYERTVTMNSLGKTF----SLTGWKIGWAIAPPHL 332 (434)
Q Consensus 260 ~~e~l~~i~~la~~~~~~iI~Dea---y~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~----g~~G~R~G~~~~~~~~ 332 (434)
++++|+++|+++|+++|+|.. |..+. .... .+..+++.| +|.| ++.|+|+||+++++++
T Consensus 213 ---~l~~i~~la~~~g~~vivd~d~~a~g~~~------~~~~----~g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~~~~ 278 (438)
T 1wyu_A 213 ---DLGPFAEAAHGAGALFVAVADPLSLGVLK------PPGA----YGADIAVGD-GQSLGLPMGFGGPHFGFLATKKAF 278 (438)
T ss_dssp ---CHHHHHHHHHHTTCEEEEECCTTGGGTBC------CHHH----HTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGG
T ss_pred ---cHHHHHHHHHHcCCEEEEEechhhccCcC------CCcc----CCCCEEEEC-CcccCCCccCCCCCeeEEEEcHHH
Confidence 477799999999999996632 32210 0111 122355555 5544 4668899999999887
Q ss_pred HHHHHHH-------------------------h-hccccCC---chHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHH
Q 013883 333 TWGVRQA-------------------------H-SFLTFAT---STPMQWAATAALRA-PETYYEELKRDYSAKKAILVE 382 (434)
Q Consensus 333 ~~~l~~~-------------------------~-~~~~~~~---~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~ 382 (434)
++.+... + ...+.+. ......+++.+|.. ..+.++++.+++.++++++.+
T Consensus 279 ~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~ 358 (438)
T 1wyu_A 279 VRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHA 358 (438)
T ss_dssp GGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 6544110 0 0112222 12222222222332 234578888999999999999
Q ss_pred HhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEE--ECCCCC
Q 013883 383 GLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVA--IPTSVF 433 (434)
Q Consensus 383 ~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v--~pG~~F 433 (434)
.|+++ |+++..+. .+|.++.+. .+ .+..+++++|.++ ||.+ .+|..|
T Consensus 359 ~L~~~~g~~~~~~~-~~~~~~~~~-~~-~~~~~~~~~L~~~-gi~v~~~~~~~~ 408 (438)
T 1wyu_A 359 LLLEVPGVRPFTPK-PFFNEFALA-LP-KDPEAVRRALAER-GFHGATPVPREY 408 (438)
T ss_dssp HHTTSTTCEECSCS-SBCSEEEEE-CS-SCHHHHHHHHHHT-TCCCCEECCTTS
T ss_pred HHhcCCCeEECCCC-CeEEEEEEe-CC-CCHHHHHHHHHHC-Cceecccccccc
Confidence 99998 99987654 333322221 12 2577899998765 9999 777654
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=205.05 Aligned_cols=305 Identities=11% Similarity=0.098 Sum_probs=199.2
Q ss_pred cCCeeEeCCCCCC--CC-CcHHHHHHHHHHHHcC----CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH
Q 013883 108 KHGAINLGQGFPN--FD-GPDFVKDAAIQAIRDG----KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180 (434)
Q Consensus 108 ~~~~i~l~~g~p~--~~-~~~~v~~~~~~~~~~~----~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~ 180 (434)
+...|||..|... +. .+|.+.+++.+++... ...|.. ....+|++++++.+.+..+. +.+ +|++++|++
T Consensus 62 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~~--~~~-~v~f~~sGs 137 (472)
T 1ohv_A 62 GNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAPK--GMS-QLITMACGS 137 (472)
T ss_dssp SCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCCT--TCC-EEEEESSHH
T ss_pred CCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCCC--CcC-EEEEeCCch
Confidence 3467899777432 22 4788888888875321 122332 23578999999987765543 355 899999999
Q ss_pred HHHHHHHHHcc--------C-----------------CC---CeEEEcCCCchhHHHHHH-HcCCE--------E---EE
Q 013883 181 EAIAATILGLI--------N-----------------PG---DEVILFAPFYDSYEATLS-MAGAK--------I---KC 220 (434)
Q Consensus 181 ~ai~~~~~~l~--------~-----------------~g---d~Vlv~~p~y~~~~~~~~-~~G~~--------~---~~ 220 (434)
+|+..+++.+. . || ++|++.++.|+++..... ..|.+ . ..
T Consensus 138 eA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~ 217 (472)
T 1ohv_A 138 CSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPI 217 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCE
T ss_pred hHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcc
Confidence 99999998763 1 45 899999999998655443 33321 1 11
Q ss_pred EEcCCCCC-------------CCCHHHHHhhccc------CCcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEE
Q 013883 221 ITLRPPDF-------------AIPIEELKSTISK------NTRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFS 280 (434)
Q Consensus 221 v~~~~~~~-------------~~d~~~l~~~i~~------~~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~ 280 (434)
+++....+ ..|++.|++++++ ++++|+++..+|++|. .++.+.+++|.++|++||+++|+
T Consensus 218 ~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~ 297 (472)
T 1ohv_A 218 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLV 297 (472)
T ss_dssp ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 22211000 1268899999876 7788888777888997 56899999999999999999999
Q ss_pred cCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHh
Q 013883 281 DEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALR 360 (434)
Q Consensus 281 Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~ 360 (434)
||+|.+|.+.|....+..+... ..+.+.||||.+ +.| ||++ ++++. .+.......+++.+++.+.++.++|+
T Consensus 298 DEv~~g~g~~g~~~~~~~~gv~--~~~Di~t~sK~~-l~G---G~~~-~~~~~-~~~~~~~~~T~~~~~~~~aaa~aal~ 369 (472)
T 1ohv_A 298 DEVQTGGGSTGKFWAHEHWGLD--DPADVMTFSKKM-MTG---GFFH-KEEFR-PNAPYRIFNTWLGDPSKNLLLAEVIN 369 (472)
T ss_dssp ECTTTTTTTTSSSSGGGGGCCS--SCCSEEEECGGG-SSE---EEEE-CGGGS-CSSSSSSCCSSSSCHHHHHHHHHHHH
T ss_pred eCcccCCCCCCCchhccccCCC--CCCCEEEEcccc-ccC---CccC-chhhc-ccccccccCccCccHHHHHHHHHHHH
Confidence 9999987665543333332111 002245899995 335 7766 65552 12222334567778889988888887
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhC----C--CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 361 APETYYEELKRDYSAKKAILVEGLNAV----G--FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~L~~~----g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
..++ +++.++++++++++++.|+++ . +....+.|.|+ ++++.. ..+..+++++|++ +||.+.|+
T Consensus 370 ~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~-~~~~~~--~~~~~~~~~~l~~-~Gv~~~~~ 439 (472)
T 1ohv_A 370 IIKR--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFC-SFDTPD--ESIRNKLISIARN-KGVMLGGC 439 (472)
T ss_dssp HHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEE-EEECSS--HHHHHHHHHHHHH-TTEECEEE
T ss_pred HHHh--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEE-EEEeCC--hhHHHHHHHHHHH-CCeEEecC
Confidence 4221 235667777777777777654 1 33345555554 445532 1125678888886 59999985
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-20 Score=185.18 Aligned_cols=216 Identities=16% Similarity=0.125 Sum_probs=155.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHH----HHcCCEEEEE-E
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATL----SMAGAKIKCI-T 222 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~G~~~~~v-~ 222 (434)
..+|+++++++++ .+..+++++| ++++..++.+++++||+|+++.+.|+++...+ ...|++++.+ +
T Consensus 60 ~~~l~~~la~~~g--------~~~~v~~~sG-t~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 130 (421)
T 2ctz_A 60 VDVLEKRLAALEG--------GKAALATASG-HAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSR 130 (421)
T ss_dssp HHHHHHHHHHHHT--------CSEEEEESSH-HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCT
T ss_pred HHHHHHHHHHHhC--------CCceEEecCH-HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECC
Confidence 4678888888876 1225555555 99999999999999999999999999987765 7789999887 5
Q ss_pred cCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCC
Q 013883 223 LRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM 302 (434)
Q Consensus 223 ~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~ 302 (434)
.+ |++.+++++++++++|++++|+||||.+++ +++|+++|++||+++|+|++|..+.+.+.. + .
T Consensus 131 ~~------d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g~~~~~--~-~---- 194 (421)
T 2ctz_A 131 EE------RPEEFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLLRP--L-A---- 194 (421)
T ss_dssp TC------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSCCG--G-G----
T ss_pred CC------CHHHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcccccccCCc--c-c----
Confidence 53 799999999999999999999999999997 778999999999999999999333232221 1 1
Q ss_pred CCceEEEccCChhhccccceeeeEEeC---hhh----HHHHHH----------------------Hh----hccccCCch
Q 013883 303 YERTVTMNSLGKTFSLTGWKIGWAIAP---PHL----TWGVRQ----------------------AH----SFLTFATST 349 (434)
Q Consensus 303 ~~~~i~i~S~SK~~g~~G~R~G~~~~~---~~~----~~~l~~----------------------~~----~~~~~~~~~ 349 (434)
.+..+++.|++|.++.+|.|+|++++. .++ .+.+.. .+ .......+.
T Consensus 195 ~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~ 274 (421)
T 2ctz_A 195 WGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGP 274 (421)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCH
T ss_pred cCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCH
Confidence 134588999999999889999988874 222 122211 00 001123344
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEee
Q 013883 350 PMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVF 392 (434)
Q Consensus 350 ~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 392 (434)
...+++...|+. +....++..++.+.+.+.|++. ++..+
T Consensus 275 ~~a~~~~~~l~~----l~~r~~~~~~~a~~l~~~L~~~p~v~~v 314 (421)
T 2ctz_A 275 FEAWVVLLGMET----LSLRAERHVENTLHLAHWLLEQPQVAWV 314 (421)
T ss_dssp HHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred HHHHHHHcCcch----HHHHHHHHHHhHHHHHHHHHhCCCeeEE
Confidence 444444455553 3344555567888888888876 66654
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=192.88 Aligned_cols=294 Identities=13% Similarity=0.123 Sum_probs=195.5
Q ss_pred cHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc----c-------
Q 013883 124 PDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL----I------- 191 (434)
Q Consensus 124 ~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l----~------- 191 (434)
++.+.+++.....+. ...|....+..++++.+.+++.+..|.+ ..+ ++++|+|+++++..++.++ +
T Consensus 113 ~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~-~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~ 190 (497)
T 2qma_A 113 MPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLS-EKA-DGIFTSGGTQSNQMGLMLARDWIADKLSGHS 190 (497)
T ss_dssp HHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TTC-EEEEESSHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCC-CCC-CeEEcCCchHHHHHHHHHHHHHHHHhhcccc
Confidence 455555554443332 2344444456788888888888888864 224 8999999999999888773 3
Q ss_pred --CC------CC-eEEEcCCCchhHHHHHHHcCC---EEEEEEcCCCCCCCCHHHHHhhcccC----Cc--EEEecCCCC
Q 013883 192 --NP------GD-EVILFAPFYDSYEATLSMAGA---KIKCITLRPPDFAIPIEELKSTISKN----TR--AILMNTPHN 253 (434)
Q Consensus 192 --~~------gd-~Vlv~~p~y~~~~~~~~~~G~---~~~~v~~~~~~~~~d~~~l~~~i~~~----~~--~i~~~~p~N 253 (434)
.+ || .|+++.+.|..+...+..+|. +++.+|.++ ++.+|++.|+++++++ ++ +|+++.++|
T Consensus 191 ~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~ 269 (497)
T 2qma_A 191 IQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANA-DGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTT 269 (497)
T ss_dssp HHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT-TSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCT
T ss_pred hhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCC-CCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCC
Confidence 12 46 799999999999999998877 799999874 7889999999999763 44 778888999
Q ss_pred CcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhh-
Q 013883 254 PTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL- 332 (434)
Q Consensus 254 PTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~- 332 (434)
|||.+.+ +++|+++|++||+++++|++|.++.+..+... .+.+.....+++.|++|.++.+ +++|+++++++.
T Consensus 270 ~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~--~~~gi~~~D~i~~s~hK~l~~p-~~~G~l~~~~~~~ 343 (497)
T 2qma_A 270 DHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILSSHKS--RLKGVERAHSISVDFHKLFYQT-ISCGALLVNDKSN 343 (497)
T ss_dssp TTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGSTTGG--GGTTGGGCSEEEEETTTTTCCC-SSCEEEEESCGGG
T ss_pred CCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhCcchH--hhcCcccCCEEEEcchhccCCC-cceEEEEEeCHHH
Confidence 9999764 67799999999999999999998765433111 1112112236678999998844 799999986443
Q ss_pred HHHHHHHhhccccC----C-------------chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEee-c
Q 013883 333 TWGVRQAHSFLTFA----T-------------STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVF-P 393 (434)
Q Consensus 333 ~~~l~~~~~~~~~~----~-------------~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~ 393 (434)
++.+.....+.... + ..+.++++...+ ..+.++++.++..++++++.+.|++. +++++ +
T Consensus 344 ~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 421 (497)
T 2qma_A 344 FKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNV--GPKALGDMYDHLLAQTLEVADMIRTNDQFELLAE 421 (497)
T ss_dssp GGGGCC--------------------CCSCCCTHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSC
T ss_pred HHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcC
Confidence 32221100000000 0 112223333333 35677888899999999999999986 88875 5
Q ss_pred CCeeEEEeeecCCCCCCC---HHHHHHHHHHhcCeEEECC
Q 013883 394 SSGTYFVVVDHTPFGHET---DIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~---~~~~~~~Ll~~~GV~v~pG 430 (434)
++.++++ +.+.+.+... ..++.++|.++ |+.+.++
T Consensus 422 ~~~~~v~-f~~~~~~~~~~~l~~~l~~~l~~~-G~~~~~~ 459 (497)
T 2qma_A 422 PSLSTVL-FRATHETADLDELNKALRLEALTR-GIAVLGE 459 (497)
T ss_dssp CSSSEEE-EEECCSSSCHHHHHHHHHHHHHHH-TSCBCEE
T ss_pred CCceEEE-EEEcCCccCHHHHHHHHHHHHHhC-CCEEEEe
Confidence 6666544 4443322110 23455666554 8877653
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-20 Score=187.32 Aligned_cols=295 Identities=13% Similarity=0.071 Sum_probs=207.4
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCC--------CCcEEEcCChHHHHHHHHHHccC---
Q 013883 124 PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDP--------EKEVTVTSGCTEAIAATILGLIN--- 192 (434)
Q Consensus 124 ~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~--------~~~i~~t~G~~~ai~~~~~~l~~--- 192 (434)
+..+.+.+..++......|....+..++++.+++++.+.+|.+... . ..++++|+++++..++.+..+
T Consensus 92 ~~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~-~g~~~~ggt~an~~al~~ar~~~~ 170 (481)
T 4e1o_A 92 PSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQG-GGVLQSTVSESTLIALLAARKNKI 170 (481)
T ss_dssp HHHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBC-EEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCC-ceEEeCchHHHHHHHHHHHHHHHH
Confidence 4456666666776666778777788999999999999998875332 2 578899999999888776532
Q ss_pred ----------------CCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccC------CcEEEecC
Q 013883 193 ----------------PGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKN------TRAILMNT 250 (434)
Q Consensus 193 ----------------~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~------~~~i~~~~ 250 (434)
+++.|+++.+.|..+...+...|++++.||.+ +++.+|++.|+++++++ +++|+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~ 249 (481)
T 4e1o_A 171 LEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVD-DNFSLRGEALQKAIEEDKQRGLVPVFVCATL 249 (481)
T ss_dssp HHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred HHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcC-CCCcCCHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 56799999999999999999999999999987 47899999999999763 56778888
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhccccceeeeEEeC
Q 013883 251 PHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP 329 (434)
Q Consensus 251 p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~ 329 (434)
++|+||.+- ++++|+++|++||+++++|++|....+... ..... .+......+..+++|.++.| .-+|+++..
T Consensus 250 ~~t~~G~id---~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~--~gi~~aDsi~~~~hK~l~~p-~g~g~l~~~ 323 (481)
T 4e1o_A 250 GTTGVCAFD---CLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFL--KGIEYADSFTFNPSKWMMVH-FDCTGFWVK 323 (481)
T ss_dssp SCTTTCCBC---CHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGG--TTGGGCSEEEECHHHHSSCC-SSCEEEEES
T ss_pred CCCCCcCcC---CHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHh--cCcccCCEEEEChHHhcCCC-CceEEEEEe
Confidence 999999875 577799999999999999999987643221 11111 11111235667999999855 457777765
Q ss_pred hh-hHHH-HHHHhhcc------------------ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-C
Q 013883 330 PH-LTWG-VRQAHSFL------------------TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-G 388 (434)
Q Consensus 330 ~~-~~~~-l~~~~~~~------------------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 388 (434)
.+ .+.. +.....+. ........++++..++. .+.++++.++..++++++.+.|++. |
T Consensus 324 ~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g--~~g~~~~~~~~~~~a~~l~~~L~~~~g 401 (481)
T 4e1o_A 324 DKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG--VKNLQAHVRHGTEMAKYFESLVRNDPS 401 (481)
T ss_dssp BHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred CHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 43 2221 10000000 00112344555555553 4568888999999999999999987 8
Q ss_pred CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 389 FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
+++..+....++++++.+.+ ....++.++|.++..+.+.|
T Consensus 402 ~~~~~~~~~~~v~f~~~~~~-~~~~~l~~~L~~~g~~~~~~ 441 (481)
T 4e1o_A 402 FEIPAKRHLGLVVFRLKGPN-SLTENVLKEIAKAGRLFLIP 441 (481)
T ss_dssp EECCSCCCSSEEEEEESSCH-HHHHHHHHHHHHHCSSBCEE
T ss_pred eEEecCCceeEEEEEeCCch-HHHHHHHHHHHhCCeEEEEe
Confidence 88875544445566653321 12567888888774355554
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=184.86 Aligned_cols=251 Identities=11% Similarity=0.058 Sum_probs=183.1
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc-------C-CCC------eEEEcCCCch
Q 013883 140 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI-------N-PGD------EVILFAPFYD 205 (434)
Q Consensus 140 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~-------~-~gd------~Vlv~~p~y~ 205 (434)
..|....+..++.+.+.+++.+..|.+ ++ ++++++|+++++..++.++. + +|| .|+++.+.|+
T Consensus 138 ~~~~~s~~~~~le~~~~~~la~l~g~~--~~-~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~ 214 (515)
T 2jis_A 138 YTYEIAPVFVLMEEEVLRKLRALVGWS--SG-DGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHY 214 (515)
T ss_dssp TCTTTCHHHHHHHHHHHHHHHHHHTCS--SC-EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCT
T ss_pred CchhhchHHHHHHHHHHHHHHHHhCCC--CC-CeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccH
Confidence 356655566677888888888777765 45 89999999999988887763 2 575 8999999999
Q ss_pred hHHHHHHHcCC---EEEEEEcCCCCCCCCHHHHHhhccc------CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCc
Q 013883 206 SYEATLSMAGA---KIKCITLRPPDFAIPIEELKSTISK------NTRAILMNTPHNPTGKMFTREELNVIASLCIENDV 276 (434)
Q Consensus 206 ~~~~~~~~~G~---~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~ 276 (434)
.+...+..+|. +++.+|.++ ++.+|++.|++++++ ++++|++++|+||||.+.+ +++|+++|++||+
T Consensus 215 s~~~~~~~~g~g~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~---l~~I~~la~~~g~ 290 (515)
T 2jis_A 215 SIQKGAAFLGLGTDSVRVVKADE-RGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP---LEAIADVCQRHGL 290 (515)
T ss_dssp HHHHHHHHTTSCGGGEEEECBCT-TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCCcEEEEecCC-CCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC---HHHHHHHHHHcCC
Confidence 99999999988 899999874 788999999999976 4789999999999999875 6779999999999
Q ss_pred EEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh--hHHHHH----HHh-hc-------
Q 013883 277 LVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH--LTWGVR----QAH-SF------- 342 (434)
Q Consensus 277 ~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~--~~~~l~----~~~-~~------- 342 (434)
++++|++|..+.+..+... ..+.+..+..+++.|++|.++ .+.++|+++++++ ++.+.. ... ..
T Consensus 291 ~l~vD~a~~~~~~~~~~~~-~~~~g~~~aD~v~~s~hK~l~-~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~ 368 (515)
T 2jis_A 291 WLHVDAAWGGSVLLSQTHR-HLLDGIQRADSVAWNPHKLLA-AGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVA 368 (515)
T ss_dssp EEEEEETTGGGGGGCTTTG-GGGTTGGGCSEEEECTTSTTC-CCSCCEEEEESCCSCHHHHHHCC---------CCSCGG
T ss_pred eEEEehhhhhHHHhChhhH-hhcCCCccCCEEEECcccccC-CCCCeeEEEEeChHHHHHHHhcCCchhccCCccccccc
Confidence 9999999998775432111 012222233478889999987 3467999999866 655421 110 00
Q ss_pred ---ccc------CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeec-CCeeEEEe
Q 013883 343 ---LTF------ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFP-SSGTYFVV 401 (434)
Q Consensus 343 ---~~~------~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~ 401 (434)
... ....+.++++..++. .+.++++.++..++++++.+.|++. |+++.. +..+.++|
T Consensus 369 ~~~~~~~~~~~rr~~al~~~~~l~~lg--~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f 436 (515)
T 2jis_A 369 LDTGDKVVQCGRRVDCLKLWLMWKAQG--DQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCF 436 (515)
T ss_dssp GCCGGGCSCSSCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEE
T ss_pred CCCCCCCCCCCCcccHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEE
Confidence 000 011344555555554 4567788889999999999999986 888764 34455554
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=191.77 Aligned_cols=234 Identities=14% Similarity=0.088 Sum_probs=160.0
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH-HHHcCCEEEEEEcCC
Q 013883 147 GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT-LSMAGAKIKCITLRP 225 (434)
Q Consensus 147 G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~-~~~~G~~~~~v~~~~ 225 (434)
-+.++++.+|++++ .+..+++++|+++++..++.+++++||+|+++.|.|.++... +...|++++.++...
T Consensus 174 ~i~e~e~~lA~~~g--------ae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~ 245 (730)
T 1c4k_A 174 PAVAAEKHAARVYN--------ADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNR 245 (730)
T ss_dssp HHHHHHHHHHHHTT--------CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEE
T ss_pred HHHHHHHHHHHHHC--------CCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCc
Confidence 35678888888776 223688999999999999999999999999999999998887 888999999887653
Q ss_pred CCCC----CCHHHH-----HhhcccC------C----cEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCc
Q 013883 226 PDFA----IPIEEL-----KSTISKN------T----RAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDK 286 (434)
Q Consensus 226 ~~~~----~d~~~l-----~~~i~~~------~----~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~ 286 (434)
++++ +|++.+ +++++++ + +++++++| ||+|.+.+ +++|+++|++||+++|+||+|..
T Consensus 246 ~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~livDeAh~~ 321 (730)
T 1c4k_A 246 NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYIEFDSAWVG 321 (730)
T ss_dssp CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEEEEECTTCC
T ss_pred cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeEEEEccccc
Confidence 3343 688888 9988765 5 89999999 68999985 67799999999999999999975
Q ss_pred c-ccCCCCc---ccc--CCCCCCCceEEEccCChhhcccccee-eeEEeChhh-------H--HHHHHHhh-ccccCCch
Q 013883 287 L-AFEMDHI---SIA--SLPGMYERTVTMNSLGKTFSLTGWKI-GWAIAPPHL-------T--WGVRQAHS-FLTFATST 349 (434)
Q Consensus 287 ~-~~~~~~~---~~~--~~~~~~~~~i~i~S~SK~~g~~G~R~-G~~~~~~~~-------~--~~l~~~~~-~~~~~~~~ 349 (434)
. .+++... .+. .+..+..+++++.|++|.++ |.+. |+++.+.+. + ..++.... ....+++.
T Consensus 322 ~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~--g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~ 399 (730)
T 1c4k_A 322 YEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA--GFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFY 399 (730)
T ss_dssp GGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSS--CCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCH
T ss_pred ccccCcccCCcCcccccccCCCCCCEEEEECCCCCCC--CCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcH
Confidence 3 3432111 111 11112346799999999864 6665 455443222 1 23332221 12233443
Q ss_pred HHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhh--CCCEeecC
Q 013883 350 PMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNA--VGFKVFPS 394 (434)
Q Consensus 350 ~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~ 394 (434)
....++..++... .+..++..+++.++.+.+++.|++ .|+.+..+
T Consensus 400 ~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p 447 (730)
T 1c4k_A 400 PMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVP 447 (730)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSC
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccc
Confidence 4333333343321 212345566777778888888887 47776544
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=184.57 Aligned_cols=294 Identities=11% Similarity=0.035 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCC-------CCcEEEcCChHHHHHHHHHHccC-----
Q 013883 125 DFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDP-------EKEVTVTSGCTEAIAATILGLIN----- 192 (434)
Q Consensus 125 ~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-------~~~i~~t~G~~~ai~~~~~~l~~----- 192 (434)
..+.+.+..++......|....+..+|++.+.+++.+.+|.+.+. . ..++++|+++++..++.+..+
T Consensus 88 ~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~-~gv~t~ggt~anl~al~~ar~~~~~~ 166 (475)
T 3k40_A 88 AIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKG-GGVIQGTASESTLVALLGAKAKKLKE 166 (475)
T ss_dssp HHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSC-EEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCC-CeEEcCchHHHHHHHHHHHHHHHHHH
Confidence 445555656665555667777788899999999999998875321 2 588999999998877766521
Q ss_pred --------------CCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccC------CcEEEecCCC
Q 013883 193 --------------PGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKN------TRAILMNTPH 252 (434)
Q Consensus 193 --------------~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~------~~~i~~~~p~ 252 (434)
+++.|+++.+.|..+...+...|++++.||.++ ++ +|++.|+++++++ +++|+++.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d~-~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~ 244 (475)
T 3k40_A 167 VKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSEN-HR-MRGAALEKAIEQDVAEGLIPFYAVVTLGT 244 (475)
T ss_dssp HHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCBT-TB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSC
T ss_pred hhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECCC-CC-cCHHHHHHHHHHHHHCCCccEEEEEEecC
Confidence 346899999999999999999999999999975 67 9999999999764 5677888999
Q ss_pred CCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC-CCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh
Q 013883 253 NPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM-DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH 331 (434)
Q Consensus 253 NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~ 331 (434)
|+||.+- ++++|+++|++||+++++|++|....+.. ..... +.+......+..+++|.++. ...+|+++....
T Consensus 245 t~~G~~~---~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~--~~gi~~~Ds~~~~~hK~l~~-p~g~g~l~~~~~ 318 (475)
T 3k40_A 245 TNSCAFD---YLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHL--MKGIESADSFNFNPHKWMLV-NFDCSAMWLKDP 318 (475)
T ss_dssp TTTCCBC---CHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGG--GTTGGGCSEEEECHHHHSSC-CSSCEEEEESSG
T ss_pred CCCcCcC---CHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHH--hcCcccCCEEEECchhccCC-CCceEEEEEeCH
Confidence 9999985 57779999999999999999998754322 11111 11111224667899998873 355788777643
Q ss_pred -hH-HHHHHHhhcc------------cc----C--CchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCE
Q 013883 332 -LT-WGVRQAHSFL------------TF----A--TSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFK 390 (434)
Q Consensus 332 -~~-~~l~~~~~~~------------~~----~--~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 390 (434)
.+ +.+.....+. .+ + .....++++...+. .+.++++.++..++++++.+.|++. |++
T Consensus 319 ~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g--~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 396 (475)
T 3k40_A 319 SWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG--VENLQAHIRRHCNFAKQFGDLCVADSRFE 396 (475)
T ss_dssp GGC---------------------------CCCGGGTHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSTTEE
T ss_pred HHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 32 2221110000 00 0 11233444444443 4567888899999999999999987 888
Q ss_pred eecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 391 VFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
+..+....++++.+.+.+ ....++.++|.++.++.+.|+
T Consensus 397 l~~~~~~~iv~f~~~~~~-~~~~~l~~~L~~~g~~~~~~~ 435 (475)
T 3k40_A 397 LAAEINMGLVCFRLKGSN-ERNEALLKRINGRGHIHLVPA 435 (475)
T ss_dssp ESSCCBTTEEEEEESSCH-HHHHHHHHHHHHHTSCBCEEE
T ss_pred EecCCceEEEEEEeCCch-HHHHHHHHHHHhCCcEEEEee
Confidence 875544445555553311 135678888887755555553
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=185.22 Aligned_cols=225 Identities=14% Similarity=0.087 Sum_probs=150.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCC
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD 227 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~ 227 (434)
+.++++.++++++ . +..+++++|+++++..++.+++++||.|+++.|.|.++...+...|++++.++.+.++
T Consensus 207 v~~~ee~la~l~G------~--d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~~ 278 (755)
T 2vyc_A 207 FGESEKYAARVFG------A--DRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNR 278 (755)
T ss_dssp HHHHHHHHHHHHT------C--SEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBCT
T ss_pred HHHHHHHHHHHhC------C--CceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCCc
Confidence 3466677776665 2 2268899999999999999999999999999999999999899999999999876433
Q ss_pred CC----C-----CHHHHHhhccc--CCc--------EEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCcc-
Q 013883 228 FA----I-----PIEELKSTISK--NTR--------AILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKL- 287 (434)
Q Consensus 228 ~~----~-----d~~~l~~~i~~--~~~--------~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~- 287 (434)
++ + |++.+++++++ +++ ++++++| ||+|.+.+ +++|+++|++||+++|+||+|...
T Consensus 279 ~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA~~~~~ 354 (755)
T 2vyc_A 279 YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWYGYA 354 (755)
T ss_dssp TSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECTTCTTG
T ss_pred cccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECcCchhc
Confidence 33 5 99999999865 344 8888998 79999985 677999999999999999999753
Q ss_pred ccCCC---CccccC--CCCCCCceEEEccCChhhccccce-eeeEEeChh---h-HHHHHHHh-hccccCCchHHHHHHH
Q 013883 288 AFEMD---HISIAS--LPGMYERTVTMNSLGKTFSLTGWK-IGWAIAPPH---L-TWGVRQAH-SFLTFATSTPMQWAAT 356 (434)
Q Consensus 288 ~~~~~---~~~~~~--~~~~~~~~i~i~S~SK~~g~~G~R-~G~~~~~~~---~-~~~l~~~~-~~~~~~~~~~~q~a~~ 356 (434)
.+++. ...+.. .+...++++++.|++|.+ +|.+ .|+++.+.+ + ...+.... .....+++.+...++.
T Consensus 355 ~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~ 432 (755)
T 2vyc_A 355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASND 432 (755)
T ss_dssp GGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHH
T ss_pred ccCcccCCcchhcCCcCCccCCCeEEEECccccc--cCcCCeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 23321 112211 111235778999999986 4666 567777544 2 23333322 2223444444444433
Q ss_pred HHHhCC-hHHHHHHHHHHHHHHHHHHHHhhh
Q 013883 357 AALRAP-ETYYEELKRDYSAKKAILVEGLNA 386 (434)
Q Consensus 357 ~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 386 (434)
.+++.. .+..++..++..++.+.+++.|++
T Consensus 433 aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~ 463 (755)
T 2vyc_A 433 VAVSMMDGNSGLSLTQEVIDEAVDFRQAMAR 463 (755)
T ss_dssp HHHHHHSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 344311 111233444444455555555544
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=173.84 Aligned_cols=228 Identities=11% Similarity=0.081 Sum_probs=154.1
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEE
Q 013883 143 ARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCIT 222 (434)
Q Consensus 143 ~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~ 222 (434)
.+..-+.++++.+|++++ .++.+++++|++.++..++.+++++||+|+++.++|.++...+...|++++.++
T Consensus 192 ~~~g~i~eaE~~lA~~fG--------a~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~ 263 (715)
T 3n75_A 192 DHSGPHKEAEQYIARVFN--------ADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFR 263 (715)
T ss_dssp TTBTHHHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEEC
T ss_pred CCcHHHHHHHHHHHHHhC--------CCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEe
Confidence 333335688899999887 333678889989999999999999999999999999999999999999999998
Q ss_pred cCCCCCCC---------CHHHHHhhccc--CCc---EEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccc
Q 013883 223 LRPPDFAI---------PIEELKSTISK--NTR---AILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLA 288 (434)
Q Consensus 223 ~~~~~~~~---------d~~~l~~~i~~--~~~---~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~ 288 (434)
.+.+++++ |++.+++++++ +++ ++++++| ||+|.+.+. ++|+++|+++ .+|+||||....
T Consensus 264 ~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl---~~I~ela~~~--~livDEAH~~~~ 337 (715)
T 3n75_A 264 PTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNT---DFIKKTLDVK--SIHFDSAWVPYT 337 (715)
T ss_dssp CCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECH---HHHHHHCCCS--EEEEECTTCTTG
T ss_pred ccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCH---HHHHHHhCcC--cEEEcccccccc
Confidence 76444553 89999999975 334 7999999 999999965 5577777665 379999998653
Q ss_pred -cCCCCccccCCCC--CCCce-EEEccCChhhccccc-eeeeEEeChhh-HHHHHHHhhccc-cCCchHHHHHHHHHHhC
Q 013883 289 -FEMDHISIASLPG--MYERT-VTMNSLGKTFSLTGW-KIGWAIAPPHL-TWGVRQAHSFLT-FATSTPMQWAATAALRA 361 (434)
Q Consensus 289 -~~~~~~~~~~~~~--~~~~~-i~i~S~SK~~g~~G~-R~G~~~~~~~~-~~~l~~~~~~~~-~~~~~~~q~a~~~~L~~ 361 (434)
|++.......+.. ..+.+ ++++|++|.++ |+ ..|+++++.++ ...++....... .+++.+..+++..+++.
T Consensus 338 ~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~ 415 (715)
T 3n75_A 338 NFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAM 415 (715)
T ss_dssp GGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSS--CCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHH
T ss_pred ccCCccccccccccCcCCCEEEEEEeccccccc--CCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 4432221222211 12333 56999999975 43 36888887653 233444443333 33444444444444432
Q ss_pred Ch-HHHHHHHHHHHHHHHHHHHHhhh
Q 013883 362 PE-TYYEELKRDYSAKKAILVEGLNA 386 (434)
Q Consensus 362 ~~-~~~~~~~~~~~~~~~~l~~~L~~ 386 (434)
-+ +.-+++++++.++.+.+++.|++
T Consensus 416 ~~~~~g~~~~~~l~~~a~~~r~~L~~ 441 (715)
T 3n75_A 416 MKGNAGKRLINGSIERAIKFRKEIKR 441 (715)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 11 12234455556666666666554
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=167.62 Aligned_cols=301 Identities=16% Similarity=0.133 Sum_probs=185.5
Q ss_pred cCCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...|||..|+ ..+. .+|.+.+++.++++...+...+..-..+|.+.+++.+. ..+ .+++++++++|+.
T Consensus 86 G~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~~~~~~~~~~~lae~l~~~~p-------~~~-~v~f~~SGsEA~e 157 (454)
T 4ao9_A 86 GHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINLTGHNLLEGRLARLICERFP-------QIE-QLRFTNSGTEANL 157 (454)
T ss_dssp CCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSCCCSEESSHHHHHHHHHHHST-------TCS-EEEEESSHHHHHH
T ss_pred CCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCCccCCcHHHHHHHHHHHHhCC-------CCC-EEEEeCchHHHHH
Confidence 34578886652 2222 46889999999988754433333333455555555432 134 7999999999999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHHH------cCCEEEEEEcCCCCCCCCHHHHHhhccc---CCcEEEecCCCC
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLSM------AGAKIKCITLRPPDFAIPIEELKSTISK---NTRAILMNTPHN 253 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~------~G~~~~~v~~~~~~~~~d~~~l~~~i~~---~~~~i~~~~p~N 253 (434)
.+++... ...++|+..+.+|++....+.. .......+|++ |++.+++.+.+ ++.+|++.....
T Consensus 158 ~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n------d~~~l~~~l~~~~~~iAavIvEPv~g 231 (454)
T 4ao9_A 158 MALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN------DAQTARAQIERHGPEIAVVLVEPMQG 231 (454)
T ss_dssp HHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT------CHHHHHHHHHHTGGGEEEEEECSEES
T ss_pred HHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc------hHHHHHHHHhhcCCceEEEEeccccC
Confidence 9987653 2346888888888875432111 11234444443 78888888864 456666654466
Q ss_pred CcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhh
Q 013883 254 PTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL 332 (434)
Q Consensus 254 PTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~ 332 (434)
..|.+ ++++.+++|.++|++||+++|+||++.+ ..+.......+.-.+| +.+++|.+| .|+.+|.+++++++
T Consensus 232 ~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~~a~e~~gv~PD----i~t~gK~lg-gG~Piga~~~~~ei 304 (454)
T 4ao9_A 232 ASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPHGLANKLGIRSD----LTTLGKYIG-GGMSFGAFGGRADV 304 (454)
T ss_dssp TTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTTCHHHHHTCCCS----EEEEEGGGG-TTSSCEEEEECHHH
T ss_pred CCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCccccchhccCCCCc----EEEeccccC-CCCcceeeeeHHHH
Confidence 67765 4677799999999999999999999974 2233222222222334 557899999 89999999999999
Q ss_pred HHHHHHHh----hccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEe-ecCCeeEEEeeecC
Q 013883 333 TWGVRQAH----SFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKV-FPSSGTYFVVVDHT 405 (434)
Q Consensus 333 ~~~l~~~~----~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~~~~~~ 405 (434)
++.+.... ...+++.++.+..++.+.|+.. ++.++++.+.-+..++.|.+.+++.++.. +...|.|+. +.+.
T Consensus 305 ~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~g-i~f~ 383 (454)
T 4ao9_A 305 MALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMN-AHFV 383 (454)
T ss_dssp HGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEE-EESC
T ss_pred HHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEE-EEEe
Confidence 87664321 2346788888888888888753 33334433333333444444444444322 223344432 2221
Q ss_pred CCCC--------CC---HHHHHHHHHHhcCeEEECCC
Q 013883 406 PFGH--------ET---DIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 406 ~~~~--------~~---~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+.+. .+ ...++..|+++ ||++.|..
T Consensus 384 ~~~~~~~~~~~~~d~~~~~~~~~~ll~~-Gv~~~p~~ 419 (454)
T 4ao9_A 384 QGDVRSSEDLAAVDGRLRQLLFFHLLNE-DIYSSPRG 419 (454)
T ss_dssp CSCCCSGGGGTTCCHHHHHHHHHHHHHT-TEECCTTC
T ss_pred cCCCCCHHHHHhhhHHHHHHHHHHHHHC-CEEEcCCC
Confidence 1110 01 13466667765 99998853
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.2e-16 Score=150.49 Aligned_cols=286 Identities=12% Similarity=0.055 Sum_probs=184.8
Q ss_pred CCCCCcHHHHHHHHHHHHcCC----CCCC-CCCC------cHHHHHHHHHHHHhhcCCCCCCCCcEEE-cCChHHHHHHH
Q 013883 119 PNFDGPDFVKDAAIQAIRDGK----NQYA-RGHG------VPEFNSAIASRFKKDSGLEVDPEKEVTV-TSGCTEAIAAT 186 (434)
Q Consensus 119 p~~~~~~~v~~~~~~~~~~~~----~~Y~-~~~G------~~~lr~~ia~~l~~~~g~~~~~~~~i~~-t~G~~~ai~~~ 186 (434)
-..+.|+.|.+++.+.+.+.. ..+. ...+ +.+.|+.++++++ .+++.+|++ ++|+++++.++
T Consensus 20 t~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~------~~~~~evif~t~~~T~a~n~a 93 (377)
T 3e77_A 20 FQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLA------VPDNYKVIFLQGGGCGQFSAV 93 (377)
T ss_dssp CSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHT------CCTTEEEEEESSHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhC------CCCCCeEEEEcCchHHHHHHH
Confidence 346678889988887765310 1010 1112 2345555555554 333226887 68999999999
Q ss_pred HHHccCC--CCeEEEcCCCchhH--HHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHH
Q 013883 187 ILGLINP--GDEVILFAPFYDSY--EATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTRE 262 (434)
Q Consensus 187 ~~~l~~~--gd~Vlv~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e 262 (434)
+..++.+ ||+|++..-.+... ...++..|..++.++.+. ++..+++.++.++++++++|.+++..|.||++.|.
T Consensus 94 ~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~-~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi- 171 (377)
T 3e77_A 94 PLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLG-SYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF- 171 (377)
T ss_dssp HHHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCS-SSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS-
T ss_pred HHhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCC-CcCCCCChHHhccCCCccEEEEeCccCchheEchh-
Confidence 9999865 89988777666554 234556787777666653 45667777888888899999998888889999874
Q ss_pred HHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHH------
Q 013883 263 ELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGV------ 336 (434)
Q Consensus 263 ~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l------ 336 (434)
+|+++|+++++|.++.... ....+..+ + +++.|..|.+|.+| +|+++.++++++.+
T Consensus 172 -------i~~~~~~~~~vD~~q~~g~---~~id~~~~----~--~~~~s~~K~~gp~G--~g~l~~~~~~l~~~~~~~p~ 233 (377)
T 3e77_A 172 -------IPDVKGAVLVCDMSSNFLS---KPVDVSKF----G--VIFAGAQKNVGSAG--VTVVIVRDDLLGFALRECPS 233 (377)
T ss_dssp -------CCCCTTCCEEEECTTTTTS---SCCCGGGC----S--EEEEEGGGTTSCTT--CEEEEEETTSCSCCCTTSCG
T ss_pred -------hhccCCCEEEEEcccccCC---CCCchhhc----C--EEEEecccccCCCc--cEEEEEcHHHHhhccCCCCc
Confidence 3678999999999997632 22222222 2 46788899999778 78888876553211
Q ss_pred ----HHH--hhccccCCchHHHHHHHHHHhCCh-H-HHHHHHHHHHHHHHHHHHHhhhC-CCEeecC----CeeEEEeee
Q 013883 337 ----RQA--HSFLTFATSTPMQWAATAALRAPE-T-YYEELKRDYSAKKAILVEGLNAV-GFKVFPS----SGTYFVVVD 403 (434)
Q Consensus 337 ----~~~--~~~~~~~~~~~~q~a~~~~L~~~~-~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~ 403 (434)
... ......+++....+++..+|+... . .++.+.++.++..+++++.|+++ |+.+.+. ..+..+-+.
T Consensus 234 ~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~ 313 (377)
T 3e77_A 234 VLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFR 313 (377)
T ss_dssp GGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEE
T ss_pred hhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEE
Confidence 111 112234566666666767776432 2 47888889999999999999987 7774331 223333344
Q ss_pred cCCCCCCC--HHHHHHHHHHhcCeEEECCC
Q 013883 404 HTPFGHET--DIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 404 ~~~~~~~~--~~~~~~~Ll~~~GV~v~pG~ 431 (434)
++....+. +..+...|. ++||.+.+|.
T Consensus 314 ~~~~~~~~~~~~~~l~~l~-~~Gi~~~~g~ 342 (377)
T 3e77_A 314 IGNAKGDDALEKRFLDKAL-ELNMLSLKGH 342 (377)
T ss_dssp ESSTTCCHHHHHHHHHHHH-HTTEESCBCC
T ss_pred cCCCCCchhHHHHHHHHHH-HCCcEEeCCC
Confidence 43211100 134556554 5699998884
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-15 Score=151.16 Aligned_cols=308 Identities=15% Similarity=0.149 Sum_probs=187.1
Q ss_pred cCCeeEeCCC--CCCCC-CcHHHHHHHHHHHHcCCC---CCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 108 KHGAINLGQG--FPNFD-GPDFVKDAAIQAIRDGKN---QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 108 ~~~~i~l~~g--~p~~~-~~~~v~~~~~~~~~~~~~---~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
+...||+..| ...+. .+|.+.+++.+++....+ .+.+. +...++++.+.+..... ..+ .+++++++++
T Consensus 63 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~----~~~~~lae~L~~~~p~~-~~~-~v~f~~sGsE 136 (456)
T 4atq_A 63 GNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVTPY----EGYVAVTEQLNRLTPGD-HAK-RTVLFNSGAE 136 (456)
T ss_dssp SCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCC----HHHHHHHHHHHHHSSCS-SCE-EEEEESSHHH
T ss_pred CCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcccCccCc----HHHHHHHHHHHHhCCCC-CCc-EEEEeCChHH
Confidence 3356887655 23333 367888899888876422 11121 33344555555443211 123 6889999999
Q ss_pred HHHHHHHHcc--CCCCeEEEcCCCchhHHHHHHH-cC-------------CEEEEEEcCCC----C-CCCCHHHHHhh--
Q 013883 182 AIAATILGLI--NPGDEVILFAPFYDSYEATLSM-AG-------------AKIKCITLRPP----D-FAIPIEELKST-- 238 (434)
Q Consensus 182 ai~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~G-------------~~~~~v~~~~~----~-~~~d~~~l~~~-- 238 (434)
|++.+++... ...++|+.....|++....... .+ ..+..+|+... . ...+.+.+++.
T Consensus 137 A~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 216 (456)
T 4atq_A 137 AVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAIT 216 (456)
T ss_dssp HHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHH
Confidence 9999987652 3457888889988886543322 11 23455554321 1 11123333332
Q ss_pred -----ccc-CCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEcc
Q 013883 239 -----ISK-NTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNS 311 (434)
Q Consensus 239 -----i~~-~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S 311 (434)
+.. +..+|++...+.-.|.+ ++++.+++|.++|++||+++|+||++.+|...|.......+.-.+| +-+
T Consensus 217 ~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PD----ivt 292 (456)
T 4atq_A 217 MIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPD----IIT 292 (456)
T ss_dssp HHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCS----EEE
T ss_pred HHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCc----hhh
Confidence 223 45566665446666764 5667799999999999999999999999877776665555544455 557
Q ss_pred CChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhh----C
Q 013883 312 LGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNA----V 387 (434)
Q Consensus 312 ~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~----~ 387 (434)
++|.+| .|+.+|.+++++++.+.+.......+|+.++.+..++.+.|+..++ +++.++.++.-+++.+.|++ +
T Consensus 293 ~gK~lg-gg~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~ 369 (456)
T 4atq_A 293 MAKGIA-GGLPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQ--HDLNGRARHIEELALGKLRELAAEL 369 (456)
T ss_dssp ECGGGG-TTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccc-CcCCceeeEecHHHHhcccccCCCCCCCCChHHHHhhHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899998 8999999999999887776555567899999999999888875321 12233334444444444433 2
Q ss_pred C---CEe---ecCCeeEEEeeecCCCC-CCC----HHHHHHHHHHhcCeEEECC
Q 013883 388 G---FKV---FPSSGTYFVVVDHTPFG-HET----DIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 388 g---~~~---~~~~~~~~~~~~~~~~~-~~~----~~~~~~~Ll~~~GV~v~pG 430 (434)
. ..+ +... |+++-+++.... ... ...++.+++++ ||++.++
T Consensus 370 ~~~~~~~v~~VRG~-Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~-Gvl~~~~ 421 (456)
T 4atq_A 370 SAGGGSVVGDIRGR-GAMLAIELVQPGSKEPNAELTKAVAAACLKE-GVIILTC 421 (456)
T ss_dssp C-----CEEEEEEE-TTEEEEEEBCTTSCCBCHHHHHHHHHHHHHT-TEECEEE
T ss_pred ccccCCceEEeeec-ceEEEEEEecCCCCCcCHHHHHHHHHHHHHC-CCEEEec
Confidence 2 122 2223 334444442211 111 23566677665 9998764
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-14 Score=145.97 Aligned_cols=310 Identities=15% Similarity=0.117 Sum_probs=187.6
Q ss_pred cCCeeEeCCCCCC--CC-CcHHHHHHHHHHHHcCCCCCCCCCC-cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHH
Q 013883 108 KHGAINLGQGFPN--FD-GPDFVKDAAIQAIRDGKNQYARGHG-VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAI 183 (434)
Q Consensus 108 ~~~~i~l~~g~p~--~~-~~~~v~~~~~~~~~~~~~~Y~~~~G-~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai 183 (434)
+...||+..|.-. +. .+|.+.+++.+++.+.. .|....+ ..+....+++.|.+..+.. .+ .+++++++++|+
T Consensus 66 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~-~~~~~~~~~~~~~~~lAe~L~~~~p~~--~~-~v~f~~sGsEA~ 141 (473)
T 4e3q_A 66 GRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFP-GYHAFFGRMSDQTVMLSEKLVEVSPFD--SG-RVFYTNSGSEAN 141 (473)
T ss_dssp CCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCC-CCCCCTTEEEHHHHHHHHHHHHHSSCS--SC-EEEEESSHHHHH
T ss_pred CCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcc-cccccccccCHHHHHHHHHHHhhCCCC--cc-EEEEeCchHHHH
Confidence 3457898776322 22 36888889988887642 2222222 2344555777776655432 34 799999999999
Q ss_pred HHHHHHcc-------CCC-CeEEEcCCCchhHHHHHHH-cC-----------CEEEEEEcCC-----CCCCC-------C
Q 013883 184 AATILGLI-------NPG-DEVILFAPFYDSYEATLSM-AG-----------AKIKCITLRP-----PDFAI-------P 231 (434)
Q Consensus 184 ~~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~-~G-----------~~~~~v~~~~-----~~~~~-------d 231 (434)
+.+++... .++ .+|+.....|++....... .| .....++... ..... .
T Consensus 142 e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 221 (473)
T 4e3q_A 142 DTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARL 221 (473)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHH
Confidence 99987642 233 5688888888874433222 22 1123333221 01111 1
Q ss_pred HHHHHhhccc----CCcEEEecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCce
Q 013883 232 IEELKSTISK----NTRAILMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERT 306 (434)
Q Consensus 232 ~~~l~~~i~~----~~~~i~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~ 306 (434)
.+++++.+.. +..+|++...+.-.|++ ++++.+++|.++|++||+++|+||++.+|...|.......+.-.+|
T Consensus 222 ~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PD-- 299 (473)
T 4e3q_A 222 ARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPD-- 299 (473)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCS--
T ss_pred HHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCC--
Confidence 2344444432 34555555446667775 4567799999999999999999999999977776655544444445
Q ss_pred EEEccCChhhcccc-ceeeeEEeChhhHHHHHHHh-------hccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 013883 307 VTMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQAH-------SFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKA 378 (434)
Q Consensus 307 i~i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~~~-------~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~ 378 (434)
+.+++|.++ .| +.+|.+++++++.+.+.... ...+|+.++.+.+++.+.|+..++ +++.++.+++-+
T Consensus 300 --i~t~~K~l~-gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~--~~l~~~~~~~g~ 374 (473)
T 4e3q_A 300 --AIISSKNLT-AGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMN--EGLAENVRRLAP 374 (473)
T ss_dssp --EEEECGGGG-TTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHH--SSHHHHHHHHHH
T ss_pred --hHHhccccc-CCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhcc--ccHHHHHHHHHH
Confidence 557899998 66 89999999999988775432 234788888888888888874211 123344444555
Q ss_pred HHHHHhhhC----CCEeecCCeeEEEeeecCCC-----CC----CCHHHHHHHHHHhcCeEEECC
Q 013883 379 ILVEGLNAV----GFKVFPSSGTYFVVVDHTPF-----GH----ETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 379 ~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~Ll~~~GV~v~pG 430 (434)
+|.+.|+++ .+.-+...|.| +-+.+... .. .....+...++++ ||++.|.
T Consensus 375 ~l~~~L~~l~~~~~v~~vRG~Gl~-~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~ 437 (473)
T 4e3q_A 375 RFEERLKHIAERPNIGEYRGIGFM-WALEAVKDKASKTPFDGNLSVSERIANTCTDL-GLICRPL 437 (473)
T ss_dssp HHHHHHHHHTTSTTEEEEEEETTE-EEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEEE
T ss_pred HHHHHHHHHhcCCCeeEEeecceE-EEEEEecCccccccccccHHHHHHHHHHHHHC-CcEEEec
Confidence 555555442 33223333433 33333211 01 1134577777655 9998773
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=148.41 Aligned_cols=282 Identities=12% Similarity=0.028 Sum_probs=178.2
Q ss_pred CCcHHHHHHHHHHHHcC----C-----CCCCC--CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEE-cCChHHHHHHHHHH
Q 013883 122 DGPDFVKDAAIQAIRDG----K-----NQYAR--GHGVPEFNSAIASRFKKDSGLEVDPEKEVTV-TSGCTEAIAATILG 189 (434)
Q Consensus 122 ~~~~~v~~~~~~~~~~~----~-----~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~-t~G~~~ai~~~~~~ 189 (434)
+.++.|++++.+.+.+. . ....+ ..-+.+.|+.++++++ .+.+.+|++ |+|+|+++.+++..
T Consensus 37 ~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~------~~~~~evif~t~~~T~a~n~ai~~ 110 (386)
T 3qm2_A 37 MLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLN------IPSNYKVLFCHGGGRGQFAGVPLN 110 (386)
T ss_dssp CCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHT------CCTTEEEEEEESCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhC------CCCCceEEEEcCCchHHHHHHHHh
Confidence 34677777776554321 0 00011 1245678888888887 432226887 68999999999999
Q ss_pred ccCCCCeEEEcCCCchhH--HHHHHHcCCEEEEEEcC--CCCCCCCHHHHHhhcccCCcEEEecCCCCCcccC-CCHHHH
Q 013883 190 LINPGDEVILFAPFYDSY--EATLSMAGAKIKCITLR--PPDFAIPIEELKSTISKNTRAILMNTPHNPTGKM-FTREEL 264 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~--~~~~~~~G~~~~~v~~~--~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~-~~~e~l 264 (434)
++.+||+|++..-.+..+ ...++..| ++..++.+ +.+..++++.++.++++++++|.+++..|.||+. .+.++
T Consensus 111 l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~pi~~- 188 (386)
T 3qm2_A 111 LLGDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDETPD- 188 (386)
T ss_dssp HCTTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTTEECCCCCC-
T ss_pred ccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcCEecCchhh-
Confidence 999999987655544443 23345678 88888887 3233367888888899999999988888888996 55433
Q ss_pred HHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHH--------
Q 013883 265 NVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGV-------- 336 (434)
Q Consensus 265 ~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l-------- 336 (434)
|. +|+++++|.++.... .+..+..+ + +.+.|..|.+|.+| +|+++.++++++.+
T Consensus 189 --i~-----~g~~~~vDa~qs~g~---~pidv~~~----~--~~~~s~hK~lGP~G--~g~l~v~~~~~~~~~~~~p~~~ 250 (386)
T 3qm2_A 189 --FG-----PEVVVTADFSSTILS---APLDVSRY----G--VIYAGAQKNIGPAG--LTLVIVREDLLGKAHESCPSIL 250 (386)
T ss_dssp --CC-----TTCCEEEECTTTTTS---SCCCGGGC----S--EEEEETTTTTCCTT--EEEEEEEGGGCSCCCTTSCGGG
T ss_pred --hc-----CCCEEEEEcccccCC---CCCCcccc----C--EEEEecccccCCCc--cEEEEECHHHHhhhcccCCcHH
Confidence 42 799999999987532 22233322 2 45688999999777 89999877653211
Q ss_pred --HHH--hhccccCCchHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHHHhhhCCCEee--cC--CeeEEEeeecCC
Q 013883 337 --RQA--HSFLTFATSTPMQWAATAALRAPET--YYEELKRDYSAKKAILVEGLNAVGFKVF--PS--SGTYFVVVDHTP 406 (434)
Q Consensus 337 --~~~--~~~~~~~~~~~~q~a~~~~L~~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~--~~~~~~~~~~~~ 406 (434)
... ......+++.+..+++..+|+...+ .+++..++.++.++++++.|+++|+-.. .+ .....+-+.++.
T Consensus 251 ~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~~~~ 330 (386)
T 3qm2_A 251 DYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQLAD 330 (386)
T ss_dssp CHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEEESS
T ss_pred HHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEECCC
Confidence 111 1112235566666666666664333 3778888899999999999998876221 11 222333344432
Q ss_pred CCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 407 FGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 407 ~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
.+. +.++..+| +++||.+.+|..
T Consensus 331 ~~~--~~~~~~~L-~~~gI~~~~g~~ 353 (386)
T 3qm2_A 331 NTL--DKVFLEES-FAAGLHALKGHR 353 (386)
T ss_dssp GGG--HHHHHHHH-HHTTEECCBCCT
T ss_pred ccc--cHHHHHHH-HHCCCEEeCCCC
Confidence 122 35666665 567999988853
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=141.19 Aligned_cols=265 Identities=18% Similarity=0.131 Sum_probs=174.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCC--cEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH--------HHHcCC-
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEK--EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT--------LSMAGA- 216 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~--~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~--------~~~~G~- 216 (434)
+.++.....++..+.+|.+... + +|..-+| +.|...++.++++|||+|+-.+....+|... +...|.
T Consensus 98 vD~iE~la~~rak~lF~a~~A~-w~VNVQP~SG-s~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~ 175 (490)
T 3ou5_A 98 VDEIELLCQRRALEAFDLDPAQ-WGVNVQPYSG-SPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIF 175 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTT-EEEECCCSSH-HHHHHHHHHHHCC-CCCEECBC------------------------
T ss_pred HHHHHHHHHHHHHHHhCCCccc-cCCCCCcCCH-HHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCccccccccc
Confidence 4456666666677777765321 1 2444455 7888889999999999999999888776432 122232
Q ss_pred -EEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCC-ccccCCCC
Q 013883 217 -KIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYD-KLAFEMDH 293 (434)
Q Consensus 217 -~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~-~~~~~~~~ 293 (434)
+.+.++++++++.+|.|.+++.... ++|+|+.-.-.+|-= + +++++.++|++.|.++++|.+|. +++-+|-.
T Consensus 176 ~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~SaY~r~--i---d~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~ 250 (490)
T 3ou5_A 176 FESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARL--I---DYARMREVCDEVKAHLLADMAHISGLVAAKVI 250 (490)
T ss_dssp ----CBCEETTTTEECHHHHHHHHHHHCCSEEEECCSSCCSC--C---CHHHHHHHHHHHTCEEEEECGGGHHHHHTTSS
T ss_pred ccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCccCccc--c---CHHHHHHHHhhcccEEEechhhhhhhhccccc
Confidence 3444555667888999999998766 899998865555543 3 47788888999999999999985 44444444
Q ss_pred ccccCCCCCCCceEEEccCChhhccccceeeeEEeCh---------------hhHHHHHHHhhccccCCchHHHHHHHH-
Q 013883 294 ISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP---------------HLTWGVRQAHSFLTFATSTPMQWAATA- 357 (434)
Q Consensus 294 ~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~q~a~~~- 357 (434)
++.... -.++..|..|+| .|.|.|.|.+++ ++.+.+...-....-+.+.....++.+
T Consensus 251 psP~~~-----ADvVTtTTHKTL--rGPrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAV 323 (490)
T 3ou5_A 251 PSPFKH-----ADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAV 323 (490)
T ss_dssp CCGGGT-----CSEEEEESSSTT--CSCSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHH
T ss_pred CCcccc-----ceEEeccccccc--cCCCceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHH
Confidence 433322 237788999997 599999999865 466677766555444555554444433
Q ss_pred HHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeec-CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 358 ALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFP-SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 358 ~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
++.. .....++...+..++.+.|.+.|.+.|++++. ...++.+++++.+.+. +. ..++++|++.||.+.
T Consensus 324 af~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvsGgTdnHlvLvDl~~~g~-tG-~~ae~~Le~agItvN 394 (490)
T 3ou5_A 324 ALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGL-DG-ARAERVLELVSITAN 394 (490)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTC-CH-HHHHHHHHHTTEECE
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCceEEEEeccccCC-CH-HHHHHHHHHcCcEEC
Confidence 3433 23345677788888999999999999999874 3456678899877665 33 556677788999875
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=141.89 Aligned_cols=287 Identities=13% Similarity=0.100 Sum_probs=181.9
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcC----CCCCC-CCCC------cHHHHHHHHHHHHhhcCCCCCCCCcEEE-cC
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDG----KNQYA-RGHG------VPEFNSAIASRFKKDSGLEVDPEKEVTV-TS 177 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~----~~~Y~-~~~G------~~~lr~~ia~~l~~~~g~~~~~~~~i~~-t~ 177 (434)
.+++|+-| | -+.++.|++++.+.+.+. ...|. ...+ +.+.|+.++++++ .+ ++. +|++ |+
T Consensus 5 ~~~~f~pg-p-t~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~----~~-~~~-~v~f~t~ 76 (361)
T 3m5u_A 5 RKINFSAG-P-STLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYE----LN-DDY-EVLFLQG 76 (361)
T ss_dssp CCEECCSS-S-CCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHT----CC-TTE-EEEEESS
T ss_pred ceEeecCC-C-CCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhC----CC-CCc-eEEEEcC
Confidence 45677655 2 345777888887766431 00010 0112 2345555566554 21 233 6887 99
Q ss_pred ChHHHHHHHHHHccCCCCeEEEcCCCchhH--HHHHHHcCCEEEEEEcCCCC-CCCCHHHHHhhcccCCcEEEecCCCCC
Q 013883 178 GCTEAIAATILGLINPGDEVILFAPFYDSY--EATLSMAGAKIKCITLRPPD-FAIPIEELKSTISKNTRAILMNTPHNP 254 (434)
Q Consensus 178 G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~G~~~~~v~~~~~~-~~~d~~~l~~~i~~~~~~i~~~~p~NP 254 (434)
|+++++.+++..++ +||++.+..-+...+ ...++..|+++..++.++.+ +.++++. + +++++++|.+++..|.
T Consensus 77 ~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~~~t~lv~~~~~e~~ 152 (361)
T 3m5u_A 77 GASLQFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV--E-FSDNADYAYICSNNTI 152 (361)
T ss_dssp HHHHHHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CCTTSSEEEEESEETT
T ss_pred cHHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh--h-cCCCCCEEEEeCCCCC
Confidence 99999999999998 888763322223333 34456789999999988633 2245665 4 8889999999888888
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHH
Q 013883 255 TGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTW 334 (434)
Q Consensus 255 TG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~ 334 (434)
||++.+. | ++ +|+++++|.++.... ....+. +-.+++.|..|.+|.+| +|+++.++++.+
T Consensus 153 tG~~~~~-----i---~~-~~~~~~vD~~q~~g~---~~id~~------~~d~~~~s~~K~~gp~G--~g~l~~~~~~~~ 212 (361)
T 3m5u_A 153 YGTQYQN-----Y---PK-TKTPLIVDASSDFFS---RKVDFS------NIALFYGGVQKNAGISG--LSCIFIRKDMLE 212 (361)
T ss_dssp TTEECSS-----C---CC-CSSCEEEECGGGTTS---SCCCCT------TEEEEEEETTTTSSCTT--CEEEEEEHHHHH
T ss_pred cceeCCc-----c---cc-cCCEEEEEcccccCC---CCCCcc------cCCEEEEechhccCCCc--cEEEEEcHHHHh
Confidence 8998652 2 33 499999999987532 122222 12377889999999777 899999988876
Q ss_pred HHHH-----------H--hhccccCCchHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHHHhhhCC-C-EeecC---
Q 013883 335 GVRQ-----------A--HSFLTFATSTPMQWAATAALRAPET--YYEELKRDYSAKKAILVEGLNAVG-F-KVFPS--- 394 (434)
Q Consensus 335 ~l~~-----------~--~~~~~~~~~~~~q~a~~~~L~~~~~--~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~~--- 394 (434)
.+.. . ......+++....+++..+|+...+ .++++.++.++.++++++.|++++ + ....+
T Consensus 213 ~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~ 292 (361)
T 3m5u_A 213 RSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKD 292 (361)
T ss_dssp HHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGG
T ss_pred hhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHH
Confidence 6542 1 1112345666666666666664222 367788888999999999999886 5 44321
Q ss_pred CeeEEEeeecCC-CCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 395 SGTYFVVVDHTP-FGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 395 ~~~~~~~~~~~~-~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
.....+-+.++. .+. +.++...| +++||.+.+|.
T Consensus 293 rs~~ivsf~~~~~~~~--~~~~~~~L-~~~gI~~~~g~ 327 (361)
T 3m5u_A 293 RSLMNVSFNIAKNKDL--EPLFVKEA-EEAGMIGLKGH 327 (361)
T ss_dssp BCSSEEEEEESSCTTH--HHHHHHHH-HHTTEECCBCC
T ss_pred cCCeEEEEECCCchhh--hHHHHHHH-HHCCCEEecCC
Confidence 122233333322 111 24566555 56799998884
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-14 Score=154.94 Aligned_cols=297 Identities=12% Similarity=0.063 Sum_probs=174.3
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc-----CC-----
Q 013883 124 PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI-----NP----- 193 (434)
Q Consensus 124 ~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~-----~~----- 193 (434)
+|.+.+++.+++.+..+..... ...+...++++.|.+..+... .+ .+++++++++|++.+++..+ ..
T Consensus 399 ~p~i~~Ai~~Q~~~l~h~~~~~-~~~~~~~~Lae~L~~~~p~~~-l~-~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~ 475 (831)
T 4a0g_A 399 QAELAREMGYTAARFGHVMFPE-NVYEPALKCAELLLDGVGKGW-AS-RVYFSDNGSTAIEIALKMAFRKFCVDHNFCEA 475 (831)
T ss_dssp HHHHHHHHHHHHHHHSSCCCTT-EECHHHHHHHHHHHHTTTTTT-CC-EEEEESSHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred CHHHHHHHHHHHhhcccccccc-cCCHHHHHHHHHHHHhCCCCC-CC-EEEECCChhHHHHHHHHHHHHHHHhhcCCCcc
Confidence 6888899988877632211111 122444566777765543210 23 79999999999998887652 12
Q ss_pred -------CCeEEEcCCCchhHH-HHHHHcCCE---------------E-------------EEEEcCCCCC---------
Q 013883 194 -------GDEVILFAPFYDSYE-ATLSMAGAK---------------I-------------KCITLRPPDF--------- 228 (434)
Q Consensus 194 -------gd~Vlv~~p~y~~~~-~~~~~~G~~---------------~-------------~~v~~~~~~~--------- 228 (434)
..+|+...-.|++-. ..+...|.. + ..++... .+
T Consensus 476 ~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~-~~~~~~~~~~~ 554 (831)
T 4a0g_A 476 TEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPE-SFSEIAPEYGT 554 (831)
T ss_dssp ------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCT-TSCCCCSSTTE
T ss_pred ccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCc-ccccccccccc
Confidence 236888888887643 333333310 0 1122211 00
Q ss_pred CCC------------------HHHHHhhccc--------CCcEEEecCC-CCCcccCC-CHHHHHHHHHHHHHcCcEEEE
Q 013883 229 AIP------------------IEELKSTISK--------NTRAILMNTP-HNPTGKMF-TREELNVIASLCIENDVLVFS 280 (434)
Q Consensus 229 ~~d------------------~~~l~~~i~~--------~~~~i~~~~p-~NPTG~~~-~~e~l~~i~~la~~~~~~iI~ 280 (434)
.-| .+.+++.+.+ ++.+|++... ++..|+.+ +++.+++|.++|++||+++|+
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~ 634 (831)
T 4a0g_A 555 FTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIF 634 (831)
T ss_dssp ESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEE
T ss_pred ccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEE
Confidence 001 2567777751 3455666543 68888754 788899999999999999999
Q ss_pred cCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccc-ceeeeEEeChhhHHHHHHHh------hccccCCchHHHH
Q 013883 281 DEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQAH------SFLTFATSTPMQW 353 (434)
Q Consensus 281 Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-~R~G~~~~~~~~~~~l~~~~------~~~~~~~~~~~q~ 353 (434)
||++.+|...|.......+.-.+| +.+++|.++ .| +++|++++++++.+.+.... ...+++.++.+++
T Consensus 635 DEV~tGfGRtG~~fa~e~~gv~PD----iitlsK~L~-gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~A 709 (831)
T 4a0g_A 635 DEVFTGFWRLGVETTTELLGCKPD----IACFAKLLT-GGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCA 709 (831)
T ss_dssp ECTTTTTTTTSBSSTHHHHSSCCS----EEEECGGGG-TTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHH
T ss_pred EcCccccccCCCchhhHhcCCCCc----EEEEecccc-cCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHH
Confidence 999999877665443333322233 447999998 67 79999999999988765321 2346788888888
Q ss_pred HHHHHHhCC--hHHHHHHHHHHHHH----HHHHHHHhhhCC-CEeecCCeeEEEeeecCCC------CCCCHHHHHHHHH
Q 013883 354 AATAALRAP--ETYYEELKRDYSAK----KAILVEGLNAVG-FKVFPSSGTYFVVVDHTPF------GHETDIAFCEYLI 420 (434)
Q Consensus 354 a~~~~L~~~--~~~~~~~~~~~~~~----~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~Ll 420 (434)
++.++|+.. ++..+++.+..+.. ++.+.+.+.+.. +..+...|. ++.+.+... ......+++++|+
T Consensus 710 aala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl-~~~iel~~~~~~~~~~~~~a~~~~~~l~ 788 (831)
T 4a0g_A 710 TAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGT-LFALELKADASNSGYASLYAKSLLIMLR 788 (831)
T ss_dssp HHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETT-EEEEEEC---------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeeccc-EEEEEEecCccccccchHHHHHHHHHHH
Confidence 888877631 11112111111111 123444455543 333344444 444444221 0112346777776
Q ss_pred HhcCeEEECCC
Q 013883 421 KEVGVVAIPTS 431 (434)
Q Consensus 421 ~~~GV~v~pG~ 431 (434)
+ +||++.|+.
T Consensus 789 e-~Gv~v~p~g 798 (831)
T 4a0g_A 789 E-DGIFTRPLG 798 (831)
T ss_dssp H-TTEECCCBT
T ss_pred H-CCcEEEecC
Confidence 5 599998853
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.7e-13 Score=131.25 Aligned_cols=263 Identities=11% Similarity=0.080 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCC----CCeEEEcCCCchhHHHHHHHcCCEEEEEEcC-
Q 013883 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINP----GDEVILFAPFYDSYEATLSMAGAKIKCITLR- 224 (434)
Q Consensus 150 ~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~----gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~- 224 (434)
.|.+.++..+-+..|.+.. . ..++++|+|.++.+++.+.+++ ||.|+++...|.+....+...|++++.++..
T Consensus 116 ~ltn~l~ld~L~~~G~~~~-~-~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~ 193 (501)
T 3hl2_A 116 KITNSLVLDIIKLAGVHTV-A-NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVL 193 (501)
T ss_dssp HHHHHHHHHHHHHTTCTTC-C-EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEE
T ss_pred HHHHHHHHHHHHHcCCCCC-C-cEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeee
Confidence 4555555444445587532 2 5899999997777776666653 4999999999999999999999999998762
Q ss_pred -CCCCCCCHHHHHhhcccC---CcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccc-cCCCCc-cccC
Q 013883 225 -PPDFAIPIEELKSTISKN---TRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLA-FEMDHI-SIAS 298 (434)
Q Consensus 225 -~~~~~~d~~~l~~~i~~~---~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~-~~~~~~-~~~~ 298 (434)
++..++|++.++++|++. .+++++.+|.+-.|.++ +++++|+++|++||+++++|+||.... +..+.+ ....
T Consensus 194 d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~--ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~ 271 (501)
T 3hl2_A 194 EGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVP--DRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGAR 271 (501)
T ss_dssp ETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCC--CCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCccc--ccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHh
Confidence 235788999999999762 33444444433223333 268889999999999999999998643 111100 1111
Q ss_pred CCCCCCceEEEccCChhhccccceeeeEEe-ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 013883 299 LPGMYERTVTMNSLGKTFSLTGWKIGWAIA-PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKK 377 (434)
Q Consensus 299 ~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~ 377 (434)
+ +.-.+++.|..|++-++ +..|.+.. ++++++++..... .-....++.......+.-..+.++++.++..++.
T Consensus 272 ~---GrAD~vVqS~HK~llvp-IGG~ii~~~d~e~l~~~~~~yP--Gr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela 345 (501)
T 3hl2_A 272 V---GRIDAFVQSLDKNFMVP-VGGAIIAGFNDSFIQEISKMYP--GRASASPSLDVLITLLSLGSNGYKKLLKERKEMF 345 (501)
T ss_dssp H---SCCCEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHHTSC--SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c---CCCcEEEecccccceee-cCceEEEeCCHHHHHHHHHhCC--CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12447899999998544 22233333 5666666533221 1122333333334444434556678888888888
Q ss_pred HHHHHHhhhC----CCEeecCC-eeEEEeeecCCCCCC---CHHHHHHHHHHh
Q 013883 378 AILVEGLNAV----GFKVFPSS-GTYFVVVDHTPFGHE---TDIAFCEYLIKE 422 (434)
Q Consensus 378 ~~l~~~L~~~----g~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~Ll~~ 422 (434)
++|++.|+++ |-++.... -...+.+.+...+.. ....+-..|..+
T Consensus 346 ~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r 398 (501)
T 3hl2_A 346 SYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTR 398 (501)
T ss_dssp HHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhc
Confidence 8888888763 54444322 222233344333211 134555556544
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.1e-13 Score=132.43 Aligned_cols=236 Identities=12% Similarity=0.054 Sum_probs=150.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccC----CCCeEEEcCCCchhHHHHHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLIN----PGDEVILFAPFYDSYEATLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~----~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~ 223 (434)
...+.+.+..++.+..|.+-. . ..++++|+|.+..+++.+.++ +++.|+++..+|......+..+|+.++.++.
T Consensus 96 ~~~~e~~~~~~~~~~lGlp~~-~-~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~ 173 (450)
T 3bc8_A 96 LNKITNSLVLNVIKLAGVHSV-A-SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIEN 173 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCTTC-C-EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCC-c-eEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEe
Confidence 446777788888777786422 2 468888888444444444433 3899999999999999999999999988866
Q ss_pred C--CCCCCCCHHHHHhhccc---CCcEEEecCC-CCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCcccc
Q 013883 224 R--PPDFAIPIEELKSTISK---NTRAILMNTP-HNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIA 297 (434)
Q Consensus 224 ~--~~~~~~d~~~l~~~i~~---~~~~i~~~~p-~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~ 297 (434)
. ++.+.+|++.++++|.+ +.+++++.+| .+.+|.+- ++++|+++|++||+++++|+||...........-.
T Consensus 174 ~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~d---dl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~ 250 (450)
T 3bc8_A 174 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPD---RLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQ 250 (450)
T ss_dssp EEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCC---CHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHH
T ss_pred eecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceec---CHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHH
Confidence 3 23578999999999966 2456666666 44455544 68889999999999999999998643211100001
Q ss_pred CCCCCCCceEEEccCChhhccccceeeeEEe-ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 013883 298 SLPGMYERTVTMNSLGKTFSLTGWKIGWAIA-PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAK 376 (434)
Q Consensus 298 ~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~ 376 (434)
.+. ...-..++.|..|++. .-.-.++++. +++.++++.... .......++...+...+....+.++++.++..++
T Consensus 251 a~~-~~~AD~~v~S~HK~l~-a~~~~~~l~~rd~~~~~~~~~~~--~g~~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~ 326 (450)
T 3bc8_A 251 GAR-VGRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMY--PGRASASPSLDVLITLLSLGCSGYRKLLKERKEM 326 (450)
T ss_dssp HHH-HSCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHS--CSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhc-ccCCCEEEECCccCCC-chhccEEEEecCHHHHHHHHHHh--hcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 0122367899999986 3444677776 555655554321 1113334444444444433444556665555666
Q ss_pred HHHHHHHhhh----CCCEee
Q 013883 377 KAILVEGLNA----VGFKVF 392 (434)
Q Consensus 377 ~~~l~~~L~~----~g~~~~ 392 (434)
.+.+++.|++ .|..+.
T Consensus 327 a~~l~~~l~~~~~~~g~~~l 346 (450)
T 3bc8_A 327 FVYLSTQLKKLAEAHNERLL 346 (450)
T ss_dssp HHHHHHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHhhHHhcCceec
Confidence 6666666654 366554
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.63 E-value=5.1 Score=36.50 Aligned_cols=96 Identities=15% Similarity=0.111 Sum_probs=63.0
Q ss_pred cEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-----CCcEE
Q 013883 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK-----NTRAI 246 (434)
Q Consensus 172 ~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-----~~~~i 246 (434)
-+++|.|+...-..+...|.+.|-.|++.+-.-......++..|.+...+..|-. |.+.+++.++. +..=+
T Consensus 31 valVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~----~~~~v~~~~~~~~~~~G~iDi 106 (273)
T 4fgs_A 31 IAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSA----NLAELDRLYEKVKAEAGRIDV 106 (273)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTT----CHHHHHHHHHHHHHHHSCEEE
T ss_pred EEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCC----CHHHHHHHHHHHHHHcCCCCE
Confidence 5666766666667778888999999988776666666777777888877776631 45666655533 22224
Q ss_pred EecCC-CCCccc--CCCHHHHHHHHHHH
Q 013883 247 LMNTP-HNPTGK--MFTREELNVIASLC 271 (434)
Q Consensus 247 ~~~~p-~NPTG~--~~~~e~l~~i~~la 271 (434)
+++|. .++.+. .++.|+|+++.++-
T Consensus 107 LVNNAG~~~~~~~~~~~~e~w~~~~~vN 134 (273)
T 4fgs_A 107 LFVNAGGGSMLPLGEVTEEQYDDTFDRN 134 (273)
T ss_dssp EEECCCCCCCCCTTSCCHHHHHHHHHHH
T ss_pred EEECCCCCCCCChhhccHHHHHHHHHHH
Confidence 44444 333332 45889999998753
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=80.78 E-value=9.5 Score=33.72 Aligned_cols=95 Identities=16% Similarity=0.097 Sum_probs=60.8
Q ss_pred cEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc------CCcE
Q 013883 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK------NTRA 245 (434)
Q Consensus 172 ~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~ 245 (434)
.+++|.|+...-..+...|.+.|-.|++.+-.-..........|.++..+..|- -|.+.+++++.. +..+
T Consensus 8 ~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv----~~~~~v~~~~~~~~~~~g~id~ 83 (247)
T 3rwb_A 8 TALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADI----SDPGSVKALFAEIQALTGGIDI 83 (247)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCT----TCHHHHHHHHHHHHHHHSCCSE
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCC----CCHHHHHHHHHHHHHHCCCCCE
Confidence 577777766666777788888998898877766666666666677777666553 145666655542 4566
Q ss_pred EEecCCCCCccc--CCCHHHHHHHHHH
Q 013883 246 ILMNTPHNPTGK--MFTREELNVIASL 270 (434)
Q Consensus 246 i~~~~p~NPTG~--~~~~e~l~~i~~l 270 (434)
++.+.-..+.+. ..+.++|+++.+.
T Consensus 84 lv~nAg~~~~~~~~~~~~~~~~~~~~~ 110 (247)
T 3rwb_A 84 LVNNASIVPFVAWDDVDLDHWRKIIDV 110 (247)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 665433333322 4577888777653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 434 | ||||
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 3e-82 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 4e-79 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 7e-76 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 1e-58 | |
| d1u08a_ | 382 | c.67.1.1 (A:) Putative methionine aminotransferase | 3e-55 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 3e-55 | |
| d2r5ea1 | 418 | c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans | 9e-54 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 2e-49 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 3e-49 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 1e-44 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 4e-43 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 5e-43 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 5e-42 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 1e-40 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 6e-40 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 1e-37 | |
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 1e-35 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 5e-34 | |
| d1wsta1 | 403 | c.67.1.1 (A:13-415) Multiple substrate aminotransf | 3e-33 | |
| d1c7na_ | 394 | c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax | 7e-26 | |
| d2gb3a1 | 389 | c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog | 1e-25 | |
| d1bw0a_ | 412 | c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try | 3e-24 | |
| d2aeua1 | 366 | c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar | 6e-24 | |
| d1d2fa_ | 361 | c.67.1.3 (A:) Modulator in mal gene expression, Ma | 6e-24 | |
| d1vp4a_ | 420 | c.67.1.1 (A:) Putative aminotransferase TM1131 {Th | 2e-21 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 1e-14 | |
| d2f8ja1 | 334 | c.67.1.1 (A:1-334) Histidinol-phosphate aminotrans | 4e-12 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 2e-08 | |
| d1fg7a_ | 354 | c.67.1.1 (A:) Histidinol-phosphate aminotransferas | 4e-08 | |
| d1svva_ | 340 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 7e-08 | |
| d1mdoa_ | 376 | c.67.1.4 (A:) Aminotransferase ArnB {Salmonella ty | 1e-07 | |
| d2e7ja1 | 364 | c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase ( | 2e-06 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 2e-06 | |
| d1m6sa_ | 343 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 1e-05 | |
| d1b9ha_ | 384 | c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid syntha | 2e-05 | |
| d1c4ka2 | 462 | c.67.1.5 (A:108-569) Ornithine decarboxylase major | 0.001 |
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 256 bits (654), Expect = 3e-82
Identities = 98/358 (27%), Positives = 179/358 (50%), Gaps = 11/358 (3%)
Query: 86 QVAKRLEKFKTTIFTQMSMLAIKHGA-----INLGQGFPNFDGPDFVKDAAIQAIRDGKN 140
++A R+E ++ + A A + G P+F+ P + +AA A+ GK
Sbjct: 2 KLAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKT 61
Query: 141 QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILF 200
+Y G P AIA + ++D+GL + VT+G ++I +L +I PGDEVI+
Sbjct: 62 RYGPAAGEPRLREAIAQKLQRDNGLCYGA-DNILVTNGGKQSIFNLMLAMIEPGDEVIIP 120
Query: 201 APFYDSYEATLSMAGAKIKCITLRPPD-FAIPIEELKSTISKNTRAILMNTPHNPTGKMF 259
APF+ SY + +A + F + E+++ I+ T+ ++ NTP NPTG ++
Sbjct: 121 APFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVY 180
Query: 260 TREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASL-PGMYERTVTMNSLGKTFS 317
T +E+ IA + +E + V SDE+Y+K+ ++ H+SI + P YER+V + KT++
Sbjct: 181 TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA 240
Query: 318 LTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKK 377
+TGW++G+ P L + T T Q+ A AA + +E+ ++ ++
Sbjct: 241 MTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERR 300
Query: 378 AILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
+++ LNA+ G + G +++ G + + FC L+ + V +P + F
Sbjct: 301 RYMLDALNAMPGLECPKPDGAFYMFPSIAKTG-RSSLDFCSELLDQHQVATVPGAAFG 357
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 248 bits (633), Expect = 4e-79
Identities = 108/356 (30%), Positives = 194/356 (54%), Gaps = 14/356 (3%)
Query: 88 AKRLEKFKTTIFTQMSMLAIKHGA-----INLGQGFPNFDGPDFVKDAAIQAIRDGKNQY 142
++R++ K + ++ A++ + L G P+FD P+ VK+AA +A+ GK +Y
Sbjct: 5 SRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKY 64
Query: 143 ARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAP 202
A G+PE A+A +F++++GL V P +E VT G ++A+ +++PGDEVI+ +P
Sbjct: 65 APPAGIPELREALAEKFRRENGLSVTP-EETIVTVGGSQALFNLFQAILDPGDEVIVLSP 123
Query: 203 FYDSYEATLSMAGAKIKCITLRPPDFAIP-IEELKSTISKNTRAILMNTPHNPTGKMFTR 261
++ SY + AG + + P + +P E ++ I+ T+A+++N+P+NPTG ++ +
Sbjct: 124 YWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPK 183
Query: 262 EELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGW 321
E L +A L +E+D + SDE+Y+ L +E +H S + E T+T+N K F++TGW
Sbjct: 184 EVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV--APEHTLTVNGAAKAFAMTGW 241
Query: 322 KIGWAIAPPHLTWGVRQAHSFLTFATSTP---MQWAATAALRAPETYYEELKRDYSAKKA 378
+IG+A P + + T + T A A + E + Y ++
Sbjct: 242 RIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRD 301
Query: 379 ILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
+L+EGL A+G K SG ++V++D +P ++ E L+ E GV +P + F
Sbjct: 302 LLLEGLTALGLKAVRPSGAFYVLMDTSPIA-PDEVRAAERLL-EAGVAVVPGTDFA 355
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 239 bits (611), Expect = 7e-76
Identities = 112/353 (31%), Positives = 193/353 (54%), Gaps = 6/353 (1%)
Query: 87 VAKRLEKFKTTIFTQMSMLAIKH-GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARG 145
++ RLE + ++ +A I+LG G P+FD P +K+ A +A+ G Y
Sbjct: 2 LSDRLELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPN 61
Query: 146 HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYD 205
G+ E AIA + KK +G+E DP+ E+ V G +A + + G+EV++ P +
Sbjct: 62 IGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFV 121
Query: 206 SYEATLSMAGAKIKCITLRPPD-FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL 264
SY + +AG K + D F + ++ELK ++ TRA+++N+P NPTG + T+++L
Sbjct: 122 SYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDL 181
Query: 265 NVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKI 323
IA +E+D++V SDEVY+ ++ H SIASL GM+ERT+T+N KTF++TGW++
Sbjct: 182 EEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRL 241
Query: 324 GWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYY--EELKRDYSAKKAILV 381
G+ AP + + + + T +Q+AA AL+ ++ EE++++Y ++ ++
Sbjct: 242 GFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVW 301
Query: 382 EGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
+ LN +G G +++ G T F E ++KE V +P S F
Sbjct: 302 KRLNEMGLPTVKPKGAFYIFPRIRDTG-LTSKKFSELMLKEARVAVVPGSAFG 353
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 195 bits (496), Expect = 1e-58
Identities = 137/382 (35%), Positives = 205/382 (53%), Gaps = 32/382 (8%)
Query: 85 QQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDG--KNQY 142
Q A+RL+ + + LA +H +NLGQGFP+F PDF +A A+ NQY
Sbjct: 1 QLQARRLDGIDYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQY 60
Query: 143 ARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAP 202
+ G P +AS F + G E+DP + V VT G A+ L++ GDEVI+ P
Sbjct: 61 TKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEP 120
Query: 203 FYDSYEATLSMAGAKIKCITLRP-----------PDFAIPIEELKSTISKNTRAILMNTP 251
F+D YE MAG + ++L+P ++ + EL + T+A+++NTP
Sbjct: 121 FFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTP 180
Query: 252 HNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMN 310
+NP GK+F+REEL ++ASLC ++DV+ +DEVY + ++ HISIASLPGM+ERT+T+
Sbjct: 181 NNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIG 240
Query: 311 SLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAA-------LRAPE 363
S GKTFS TGWK+GW + P H+ +R H F T Q A + R P
Sbjct: 241 SAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPS 300
Query: 364 TYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGH-----------ETD 412
+Y+ + + + ++ L +VG K G+YF++ D + F D
Sbjct: 301 SYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYD 360
Query: 413 IAFCEYLIKEVGVVAIPTSVFY 434
F +++IK G+VAIP S+FY
Sbjct: 361 RRFVKWMIKNKGLVAIPVSIFY 382
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Score = 185 bits (470), Expect = 3e-55
Identities = 132/352 (37%), Positives = 205/352 (58%), Gaps = 1/352 (0%)
Query: 84 PQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYA 143
P +L + TTIFTQMS LA +H AINL QGFP+FDGP ++++ + G NQYA
Sbjct: 1 PLIPQSKLPQLGTTIFTQMSALAQQHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYA 60
Query: 144 RGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPF 203
GV AIA + ++ G + D + ++TVT+G TEA+ A I L+ GDEVI F P
Sbjct: 61 PMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPS 120
Query: 204 YDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREE 263
YDSY ++++G +K + L+PP F + +E + +S+ TR +++NTPHNP+ ++ + +
Sbjct: 121 YDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQAD 180
Query: 264 LNVIASL-CIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWK 322
+ ++ + + H S+ + P + ER V ++S GKT+ +TGWK
Sbjct: 181 FAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWK 240
Query: 323 IGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVE 382
+G+ +AP ++ +R+ H +LTF+ +TP Q A LRA +Y L Y K+ ILV
Sbjct: 241 VGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVN 300
Query: 383 GLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
LN ++ P GTYF++VD++ D+ FC++L +E GV AIP SVF
Sbjct: 301 ALNESRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFC 352
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 185 bits (471), Expect = 3e-55
Identities = 91/333 (27%), Positives = 157/333 (47%), Gaps = 12/333 (3%)
Query: 112 INLGQGFPN---FDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVD 168
I L G P F P+ +K+A +AI++G N Y G+PE AI R K+ +G+++
Sbjct: 33 IRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDIT 92
Query: 169 PEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLR-PPD 227
P+ + TEA+ L++PGDE+++ P Y Y + G K D
Sbjct: 93 PDDVRVTAA-VTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEED 151
Query: 228 FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKL 287
+ I++++ I+ T+AI + P+NPTG ++ ++ L I ++ E ++ V SDE+YD +
Sbjct: 152 WQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLM 211
Query: 288 AFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA--PPHLTWGVRQAHSFL-- 343
+E +HIS S + MN L K + TGW++G+ P + VR+A L
Sbjct: 212 TYEGEHISPGS-LTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLAR 270
Query: 344 -TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG-FKVFPSSGTYFVV 401
+TP Q+AA A L P Y +E + ++ + + LN + G +++
Sbjct: 271 IRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIF 330
Query: 402 VDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
+ D F ++ V+ + S F
Sbjct: 331 PKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFG 363
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Score = 183 bits (463), Expect = 9e-54
Identities = 130/379 (34%), Positives = 194/379 (51%), Gaps = 30/379 (7%)
Query: 86 QVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGK---NQY 142
+ KR + +++ + LA ++ +NLGQGFP++ P + +A A NQY
Sbjct: 3 DLPKRYQGSTKSVWVEYIQLAAQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQY 62
Query: 143 ARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAP 202
RG G P A++ + + ++P EV VT G EA+ ATI G ++ GDEVI+ P
Sbjct: 63 TRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEP 122
Query: 203 FYDSYEATLSMAGAKIKCITLRPPD---------FAIPIEELKSTISKNTRAILMNTPHN 253
F+D YE + AG + I L+P + + EL++ ++ T+ I++NTPHN
Sbjct: 123 FFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHN 182
Query: 254 PTGKMFTREELNVIASLCIENDVLVFSDEVY-DKLAFEMDHISIASLPGMYERTVTMNSL 312
P GK+ R EL V+A+LC + +VL SDEVY + +HI I +LPGM+ERT+T+ S
Sbjct: 183 PLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSA 242
Query: 313 GKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTP-------MQWAATAALRAPETY 365
GKTFSLTGWKIGWA P L ++ H + +TP L++PE Y
Sbjct: 243 GKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECY 302
Query: 366 YEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGH----------ETDIAF 415
+ + + AK+ + L VG G YF+V D + D F
Sbjct: 303 FNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRF 362
Query: 416 CEYLIKEVGVVAIPTSVFY 434
+++ K VG+ IP S FY
Sbjct: 363 TKWMTKSVGLQGIPPSAFY 381
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 170 bits (430), Expect = 2e-49
Identities = 99/354 (27%), Positives = 174/354 (49%), Gaps = 14/354 (3%)
Query: 87 VAKRLEKFKTTIFTQMSMLA---IKHG--AINLGQGFPNFDGPDFVKDAAIQAIRDGKNQ 141
V++R+ + + ++ A IK G INL G P+F P+ V + A++ ++ G+ +
Sbjct: 1 VSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVK 60
Query: 142 YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFA 201
Y G+ E IA R + ++ P++ V +A+ + L++PGDEVI+F+
Sbjct: 61 YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGA-KQALFNAFMALLDPGDEVIVFS 119
Query: 202 PFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS-KNTRAILMNTPHNPTGKMFT 260
P + SY + +AG + + P E + T+A+L+N+P+NPTG ++
Sbjct: 120 PVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYR 179
Query: 261 REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTG 320
RE L + L + + + SDEVYD L + + SI + ++R V +N K+ S+TG
Sbjct: 180 REFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTG 239
Query: 321 WKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAIL 380
W++G+ I+ + V + S T +T Q+AA AL +Y + + +K +
Sbjct: 240 WRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQ---TFKERKNFV 296
Query: 381 VEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
VE L +G K G +++ D+ FCE L++E V +P S F
Sbjct: 297 VERLKKMGVKFVEPEGAFYLFFKV----RGDDVKFCERLLEEKKVALVPGSAFL 346
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 171 bits (433), Expect = 3e-49
Identities = 40/366 (10%), Positives = 95/366 (25%), Gaps = 63/366 (17%)
Query: 106 AIKHGAINLGQGFPNFDGPDFVKDAAIQAI----RDGKNQYARGHGV---PEFNSAIASR 158
I+ + ++ G F + + A+ + + E I
Sbjct: 53 KIQGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKEL 112
Query: 159 FKKDSGLEVDPEKEVTVTSGCTEAIAATILGL--------INPGDEVILFAPFYDSYEAT 210
+ ++ + G T+ I ++ L P +V+ APFY +
Sbjct: 113 HEVVGNAAAK-DRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQ 171
Query: 211 LSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASL 270
K +A + + ++ +P+NP G
Sbjct: 172 TKYFDKK-------GYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGL------------- 211
Query: 271 CIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP 330
+ + V+ +YD + + + I + + + ++ K +G + GWA+
Sbjct: 212 -LRHAVIKGCKSIYDMVYYWPHYTPI---KYKADEDILLFTMSKFTGHSGSRFGWALIKD 267
Query: 331 -HLTWGVRQAHSFLTFATSTPMQWAATAALRAP-----------ETYYEELKRDYSAKKA 378
+ + + T T Q + L+ + +
Sbjct: 268 ESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWV 327
Query: 379 ILVEGLNAVGFKVFP----SSGTYFVVVDHTPFG-------HETDIAFCEYLIKEVGVVA 427
+ L+ + S + P + C + +
Sbjct: 328 NITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINT 387
Query: 428 IPTSVF 433
F
Sbjct: 388 QNGVGF 393
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 158 bits (400), Expect = 1e-44
Identities = 59/360 (16%), Positives = 102/360 (28%), Gaps = 47/360 (13%)
Query: 112 INLGQG-FPNFDGP----DFVKDA--AIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSG 164
+NLG G + D V+ I ++Y G+ EF + + D
Sbjct: 33 VNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDS 92
Query: 165 LEVDPEKEVTV--------TSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGA 216
+ ++ V E +A G N V + +P ++++ + AG
Sbjct: 93 PALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGF 152
Query: 217 KIKCITLRPPDF-----AIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLC 271
K + + +L HNPTG T E+ IAS+
Sbjct: 153 KDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVM 212
Query: 272 IENDVLVFSDEVYDKLAF---EMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA 328
+ F D Y A E D +I S K F L ++G
Sbjct: 213 KRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTV 272
Query: 329 PPH------LTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRD-------YSA 375
Q +T++ A + + E + +
Sbjct: 273 VAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILS 332
Query: 376 KKAILVEGLNAVG----FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431
++ L L A+ + F P EYLI + + +P+
Sbjct: 333 MRSELRARLEALKTPGTWNHITDQIGMFSFTGLNP-------KQVEYLINQKHIYLLPSG 385
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 153 bits (386), Expect = 4e-43
Identities = 111/351 (31%), Positives = 168/351 (47%), Gaps = 17/351 (4%)
Query: 86 QVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARG 145
++ R E K +IF +MS LA + GA+NLGQGFP+ P F+ +A +A+ ++QYA
Sbjct: 2 RLHPRTEAAKESIFPRMSGLAQRLGAVNLGQGFPSNPPPPFLLEAVRRAL-GRQDQYAPP 60
Query: 146 HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYD 205
G+P A+A F V+PE V TSG TEA+ + L+ PGDEV++ PF+D
Sbjct: 61 AGLPALREALAEEFA------VEPESVVV-TSGATEALYVLLQSLVGPGDEVVVLEPFFD 113
Query: 206 SYEATLSMAGAKIKCITL--RPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREE 263
Y +AGAK + + L P F + + L+ ++ TRA+L+NTP NPTG +F E
Sbjct: 114 VYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERE 173
Query: 264 LNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKI 323
L IA L +D+ + SDEVYD+L + + TV +
Sbjct: 174 LEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGW 233
Query: 324 GWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEG 383
+ + + T A L E +YE L+ Y ++ +L G
Sbjct: 234 IVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGG 293
Query: 384 LNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
L A+G +V+ GTYF++ + + L++E V IP S FY
Sbjct: 294 LRAMGLRVYVPEGTYFLMAELPGWD-------AFRLVEEARVALIPASAFY 337
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 153 bits (387), Expect = 5e-43
Identities = 60/368 (16%), Positives = 111/368 (30%), Gaps = 41/368 (11%)
Query: 98 IFTQMSMLAIKHGA--INLGQG-FPNFDG----PDFVKDAAIQAIRDGKN-QYARGHGVP 149
I + INLG G + + G VK A + + Y G+P
Sbjct: 13 ILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIP 72
Query: 150 EFNSAIASRFKKDSGLEVDP---EKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDS 206
EF ++ T +AA L V + P + +
Sbjct: 73 EFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPN 132
Query: 207 YEATLSMAGAKIKCITLRPPD----FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTRE 262
+++ + AG +++ + + + + HNPTG T E
Sbjct: 133 HKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLE 192
Query: 263 ELNVIASLCIENDVLVFSDEVYDKLAF--EMDHISIASLPGMYERTVTMNSLGKTFSLTG 320
+ +A L +E L D Y A E D + + M++ + +S K F L
Sbjct: 193 QWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYN 252
Query: 321 WKIGWAIAPPHLTWGVRQAHSFL------TFATSTPMQWAATAALRAPETYYEELKRD-- 372
++G + V +A S + ++ + A + + + +++
Sbjct: 253 ERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELT 312
Query: 373 -----YSAKKAILVEGLNAVG----FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEV 423
+ + V L G F F T L +E
Sbjct: 313 DMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTK-------EQVLRLREEF 365
Query: 424 GVVAIPTS 431
GV A+ +
Sbjct: 366 GVYAVASG 373
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 150 bits (380), Expect = 5e-42
Identities = 62/355 (17%), Positives = 113/355 (31%), Gaps = 40/355 (11%)
Query: 110 GAINLGQG-FPNFDG----PDFVKDA--AIQAIRDGKNQYARGHGVPEFNSAIASRFKKD 162
+NL G + N DG V +A + A G + Y G+ + AIA
Sbjct: 27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGA 86
Query: 163 SGLEVDPEK---EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIK 219
+ ++ T+ + A L P V + P ++++ A + AG ++
Sbjct: 87 DHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVS 146
Query: 220 CITLRPPD----FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIEND 275
+ T+ + +L HNPTG T ++ + + + +
Sbjct: 147 TYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARE 206
Query: 276 VLVFSDEVYDKLAF--EMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT 333
++ F D Y E D +I ++ + NS K FSL G ++G
Sbjct: 207 LIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDA 266
Query: 334 WGVRQAHSFL------TFATSTPMQWAATAALRAPETYYEELK-------RDYSAKKAIL 380
+ L +++ AA+ E A + L
Sbjct: 267 EAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQEL 326
Query: 381 VEGLNAVG----FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431
V+ L+ F + F + A + L +E GV I +
Sbjct: 327 VKVLSTEMPERNFDYLLNQRGMFSYTGLSA-------AQVDRLREEFGVYLIASG 374
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 147 bits (370), Expect = 1e-40
Identities = 61/365 (16%), Positives = 105/365 (28%), Gaps = 38/365 (10%)
Query: 98 IFTQMSMLA--IKHGAINLGQG-FPNFDG----PDFVKDAAIQAIRDGKN-QYARGHGVP 149
I M + G I+LG G + + G V A + + YA G P
Sbjct: 13 ILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEP 72
Query: 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA 209
EF A+ D TV A + + NP V + P + ++ +
Sbjct: 73 EFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVS 132
Query: 210 TLSMAGAKIKCITLRPP----DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELN 265
++ G ++ ++ + K +L HNPTG T ++
Sbjct: 133 IMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWA 192
Query: 266 VIASLCIENDVLVFSDEVYDKLAFE--MDHISIASLPGMYERTVTMNSLGKTFSLTGWKI 323
IAS+ + L D Y D + + S K F + +
Sbjct: 193 EIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERT 252
Query: 324 GWAIAPPHLTWGVRQAHSFLTFA--TSTPMQWAATAALRAPETYYEELKRD--------- 372
G +A A + F + A + + EL+ D
Sbjct: 253 GCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVR 312
Query: 373 --YSAKKAILVEGLNAVG----FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426
+ L L + F F + TP + + +E G+
Sbjct: 313 SGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATP-------EQVKRIKEEFGIY 365
Query: 427 AIPTS 431
+ S
Sbjct: 366 MVGDS 370
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 145 bits (366), Expect = 6e-40
Identities = 62/370 (16%), Positives = 109/370 (29%), Gaps = 43/370 (11%)
Query: 98 IFTQMSMLAIKHGA--INLGQG-FPNFDG----PDFVKDAAIQAIRDGKN-QYARGHGVP 149
I + +NLG G + + +G + V+ A + +Y G+
Sbjct: 15 ILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLA 74
Query: 150 EFNSAIASRFKKDSGLEVDPEKEVTV----TSGCTEAIAATILGLINPGDEVILFAPFYD 205
+F A A ++ + VTV +G A + +V L P +
Sbjct: 75 DFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWG 134
Query: 206 SYEATLSMAGAKIKCITLRPPD----FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTR 261
++ AG +++ P E S I + + +L HNPTG +
Sbjct: 135 NHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQ 194
Query: 262 EELNVIASLCIENDVLVFSDEVYDKLAF---EMDHISIASLPGMYERTVTMNSLGKTFSL 318
E+ +AS+ + ++L + D Y A D ++ V S K L
Sbjct: 195 EQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGL 254
Query: 319 TGWKIGWAIAPPHLTWGVRQAHSFLTFATST-------PMQWAATAALRAP------ETY 365
G + G ++ S L A+ L P
Sbjct: 255 YGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVE 314
Query: 366 YEELKRDYSAKKAILVEGLNAVG----FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIK 421
+ + + + LV L G ++ F P E L K
Sbjct: 315 VKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKP-------EQVERLTK 367
Query: 422 EVGVVAIPTS 431
E +
Sbjct: 368 EFSIYMTKDG 377
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 139 bits (350), Expect = 1e-37
Identities = 50/361 (13%), Positives = 91/361 (25%), Gaps = 48/361 (13%)
Query: 112 INLGQG-FPNFDG----PDFVKDA--AIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSG 164
++LG G + + +G VK A I ++Y G+P S A
Sbjct: 32 VDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQS 91
Query: 165 LEVDPEKEVTV---TSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCI 221
+ ++ ++V + I+A P V L P + ++ A G K
Sbjct: 92 DALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATY 151
Query: 222 TLRPPDF----AIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVL 277
+ + + +L + HNPTG T E+ I + +
Sbjct: 152 PYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHI 211
Query: 278 VFSDEVYDKLAFE------MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH 331
D Y A S K + G ++G
Sbjct: 212 ALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALT 271
Query: 332 LTWGVRQAHSF-----------LTFATSTPMQWAATAALRAPETY------YEELKRDYS 374
+ L PE + +
Sbjct: 272 KQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRIT 331
Query: 375 AKKAILVEGLNAVG----FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430
+ L + L +G + + F TP + L + V + +
Sbjct: 332 KMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTP-------QMVKRLEETHAVYLVAS 384
Query: 431 S 431
Sbjct: 385 G 385
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 134 bits (337), Expect = 1e-35
Identities = 69/364 (18%), Positives = 132/364 (36%), Gaps = 40/364 (10%)
Query: 109 HGAINLGQGFPNFDGPDFVKD------------AAIQAIRDGKNQYARGHGVPEFNSAIA 156
+G I +G N D ++ ++I + HG+P F A+
Sbjct: 36 NGIIQMGLA-ENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMV 94
Query: 157 SRFKK--DSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSY-EATLSM 213
+ + + DP + +T+G T A I L +PG+ V++ P+Y +
Sbjct: 95 DFMAEIRGNKVTFDPN-HLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWR 153
Query: 214 AGAKIKCITLRP-------PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266
G +I I + + + +L+ P NP G TR EL +
Sbjct: 154 TGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYL 213
Query: 267 IASLCIENDVLVFSDEVYDKLAFEMD-HISIASLP---------GMYERTVTMNSLGKTF 316
+ S + + + SDE+Y AF IS+ + +++R + SL K
Sbjct: 214 LLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDL 273
Query: 317 SLTGWKIGWAIAPPHLTWGV--RQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYS 374
L G+++G + + + + L + + + A + + + Y E +
Sbjct: 274 GLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLK 333
Query: 375 AKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPF----GHETDIAFCEYLIKEVGVVAIPT 430
++ LV GL G + F VD E ++ + ++ EV + P
Sbjct: 334 QRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPG 393
Query: 431 SVFY 434
S +
Sbjct: 394 SSCH 397
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 129 bits (325), Expect = 5e-34
Identities = 63/360 (17%), Positives = 118/360 (32%), Gaps = 33/360 (9%)
Query: 108 KHGAINLGQG--FPNFD--------GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIAS 157
+G I +G D P + + HG+PEF AIA
Sbjct: 35 PNGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAK 94
Query: 158 RFKKDSGLEVDPEKE-VTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGA 216
+K G V + E V + G T A I L +PGD ++ +P+Y ++ L
Sbjct: 95 FMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTG 154
Query: 217 --------KIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268
+ E + + +++ P NP G ++ L +
Sbjct: 155 VQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVL 214
Query: 269 SLCIENDVLVFSDEVYDKLAFEMDHISI--------ASLPGMYERTVTMNSLGKTFSLTG 320
S ++++ + DE+Y F+ + + SL K L G
Sbjct: 215 SFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG 274
Query: 321 WKIGWAIAPPHLTWGVRQAHS--FLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKA 378
+++G + + S L + A + + + + E +
Sbjct: 275 FRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHK 334
Query: 379 ILVEGLNAVGFKVFPSSGTYFVVVDHTPF----GHETDIAFCEYLIKEVGVVAIPTSVFY 434
GL VG K ++ F +D P +++++ +I +V + P S F
Sbjct: 335 HFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFE 394
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Score = 127 bits (319), Expect = 3e-33
Identities = 67/362 (18%), Positives = 128/362 (35%), Gaps = 20/362 (5%)
Query: 88 AKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDG--PDFVKDAAIQAIRDGKN---QY 142
+++ K + ++ L I+L G P + + +K A++ + + + QY
Sbjct: 8 SEKAMLMKASEVRELLKLVETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQY 67
Query: 143 ARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAP 202
G A+A +K + + E+ +G +A+ +NPGD +++ AP
Sbjct: 68 GTTKGFTPLRLALARWMEKRYDIPMSKV-EIMTVAGSQQALDLIGRVFLNPGDPIVVEAP 126
Query: 203 FYDSYEATLSMAGAKIKCITLRPPD-----FAIPIEELKSTISKNTRAILMNTPHNPTGK 257
Y + + I L +EEL+ + ++T NP G
Sbjct: 127 TYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGV 186
Query: 258 MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFS 317
+ + + L E D L+ D Y +L + + Y R + + + K +
Sbjct: 187 TMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILA 246
Query: 318 LTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTP--MQWAATAALRAPETYYEELKRDYSA 375
G++IGW A PHL + A + T+T + + ++ Y
Sbjct: 247 -PGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKP 305
Query: 376 KKAILVEGLNAV---GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432
++ ++E L G + G FV V D GV +P
Sbjct: 306 RRDAMLEALEEYMPEGVEWTKPEGGMFVRVT---LPEGIDTKLMMERAVAKGVAYVPGEA 362
Query: 433 FY 434
F+
Sbjct: 363 FF 364
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Score = 106 bits (263), Expect = 7e-26
Identities = 50/332 (15%), Positives = 104/332 (31%), Gaps = 13/332 (3%)
Query: 112 INLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEK 171
+ L F P + + + + + Y E+ + K ++ +
Sbjct: 34 VPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPT--EEYKKTVKKWMKDRHQWDIQTDW 91
Query: 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIP 231
+ A+ + PGD VI+ P Y + + KI L D
Sbjct: 92 IINTAGVVP-AVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYT 150
Query: 232 IEEL---KSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLA 288
I+ K + KN +A+L +PHNP G+++ ++EL I + +++D++++SDE++ L
Sbjct: 151 IDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLI 210
Query: 289 FEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348
++ T+ + + +G + + +
Sbjct: 211 MPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSG 270
Query: 349 TPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV------GFKVFPSSGTYFVVV 402
P A + + K GTY +
Sbjct: 271 MPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWI 330
Query: 403 DHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
D A E++I + + +F
Sbjct: 331 DFRALK-MDHKAMEEFMIHKAQIFFDEGYIFG 361
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Score = 105 bits (262), Expect = 1e-25
Identities = 67/358 (18%), Positives = 143/358 (39%), Gaps = 18/358 (5%)
Query: 88 AKRLEKFKTTIFTQMSMLAIK-----HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQY 142
+ R+ + + ++ A +L G P+ P+ + + + Y
Sbjct: 2 SDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERIYEN-KPEVVYY 60
Query: 143 ARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAP 202
+ G+ E A AS +K+ ++ + V VT+G +EAI + + NPGDE+++ P
Sbjct: 61 SHSAGIWELREAFASYYKRRQRVD-VKPENVLVTNGGSEAILFSFAVIANPGDEILVLEP 119
Query: 203 FYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTRE 262
FY +Y A +AG K+ +T R + + L+S I++ T+ I+++ P NPTG ++ ++
Sbjct: 120 FYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKD 179
Query: 263 ELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWK 322
E+ + + + + + DEVY + ++L ++ V ++S+ K FS G +
Sbjct: 180 EMRYLVEIAERHGLFLIVDEVYSE--IVFRGEFASALSIESDKVVVIDSVSKKFSACGAR 237
Query: 323 IGWAIAPPHLTWGVRQAHS-FLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILV 381
+G I + + + + + +L
Sbjct: 238 VGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLK 297
Query: 382 EGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEV-----GVVAIPTSVFY 434
+ + SG +++ + E F +++ + + P FY
Sbjct: 298 KLEEHGLKRFTKPSGAFYITAE---LPVEDAEEFARWMLTDFNMDGETTMVAPLRGFY 352
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Score = 101 bits (252), Expect = 3e-24
Identities = 58/348 (16%), Positives = 122/348 (35%), Gaps = 25/348 (7%)
Query: 112 INLGQGFPNFDGPDFVKDAAIQAIRDG-----KNQYARGHGVPEFNSAIASRFKK----- 161
I L G P D A I+ +++ N Y G PE A+A+ ++
Sbjct: 33 IKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHK 92
Query: 162 -DSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKC 220
+ + + V + G + A ++ F +
Sbjct: 93 EELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFY 152
Query: 221 ITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFS 280
D+ ++E++ T+ +++ P NP G F+R+ + I L E + +FS
Sbjct: 153 NCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFS 212
Query: 281 DEVYDKLAFEMDH----ISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL---- 332
DE+Y + F+ + + V + K + GW++GW +
Sbjct: 213 DEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGP 272
Query: 333 --TWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLN-AVGF 389
G+++ + + A L P+ + +++ L + +G
Sbjct: 273 SFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGL 332
Query: 390 KVFPSSGTYFVVVDHTPFGH---ETDIAFCEYLIKEVGVVAIPTSVFY 434
G +++ + +TD+ F E L++E V +P ++F+
Sbjct: 333 APTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH 380
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 100 bits (249), Expect = 6e-24
Identities = 45/359 (12%), Positives = 97/359 (27%), Gaps = 47/359 (13%)
Query: 90 RLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVP 149
RLEK + I + + G + + + +
Sbjct: 2 RLEKARKIILEI-----LNEKGRDALYDLSGLSGGFLIDEKDKALLN---TYIGSSYFAE 53
Query: 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPF--YDSY 207
+ N D + + + AI ATIL L P + + S
Sbjct: 54 KVNEYGLKHL------GGDENDKCVGFNRTSSAILATILAL-KPKKVIHYLPELPGHPSI 106
Query: 208 EATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267
E + + AK + E+ + I K+T I+ + + E +
Sbjct: 107 ERSCKIVNAKY----FESDK----VGEILNKIDKDTLVIITGSTMDLKV--IELENFKKV 156
Query: 268 ASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI 327
+ + +VF D+ + + P + + + G + G
Sbjct: 157 INTAKNKEAIVFVDDASGARVRLLFN-----QPPALKLGADLVVTSTDKLMEGPRGGLLA 211
Query: 328 APPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAI-------- 379
L + + P+ AL+ E +++ + K
Sbjct: 212 GKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNF--NLERIRKAFERAKNFDLSKIEKL 269
Query: 380 -----LVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433
++ + ++ P+ V + I L+K G++ I +
Sbjct: 270 NKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGM 328
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Score = 100 bits (248), Expect = 6e-24
Identities = 50/332 (15%), Positives = 99/332 (29%), Gaps = 14/332 (4%)
Query: 112 INLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEK 171
+ +F + +A Q + G Y+R EF +AIA F +D +
Sbjct: 2 LPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQ- 59
Query: 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIP 231
V ++ I G+ V++ P YD++ + + + L
Sbjct: 60 TVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWF 119
Query: 232 IEELKS----TISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKL 287
+ K + +L + + E + ++ + D +
Sbjct: 120 CDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMV 179
Query: 288 AFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT 347
E HI +++ +T S K+F++ + I + +
Sbjct: 180 WGEQPHIPWSNVARGDWALLTSGS--KSFNIPALTGAYGIIENSSSRDAYLSALKGRDGL 237
Query: 348 STPMQWAATAALRA-----PETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVV 402
S+P A TA + A P + + TY +
Sbjct: 238 SSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWL 297
Query: 403 DHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434
D P D A + LI++ V +P +
Sbjct: 298 DLRPLN-IDDNALQKALIEQEKVAIMPGYTYG 328
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Score = 93.3 bits (230), Expect = 2e-21
Identities = 66/368 (17%), Positives = 124/368 (33%), Gaps = 23/368 (6%)
Query: 86 QVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDG--PDFVKDAAIQAIRDGKN--- 140
+++K + K++I ++ A AI+ G G P+ + + + A + I +
Sbjct: 15 KISKIGQNMKSSIIREILKFAADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTL 74
Query: 141 QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILF 200
QY+ G P I ++ G+ E + T G +A+ ++ +L
Sbjct: 75 QYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLD 134
Query: 201 APFYDSYEATLSMAGAKIKCITLRP-------PDFAIPIEELKSTISKNTRAILMNTPHN 253
P Y A + L + + + I + +++ HN
Sbjct: 135 DPAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHN 194
Query: 254 PTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLG 313
P G + E+ + + + D+ + D+ Y L +E + + G ER V +N+
Sbjct: 195 PAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFS 254
Query: 314 KTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP------ETYYE 367
K + G +IG + QA + A L + E
Sbjct: 255 KVLA-PGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIE 313
Query: 368 ELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426
+R + L E + + G K S G F+ + EY K V
Sbjct: 314 LYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPE--GFDTWEMFEYA-KRKKVF 370
Query: 427 AIPTSVFY 434
+P VF
Sbjct: 371 YVPGRVFK 378
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 73.4 bits (179), Expect = 1e-14
Identities = 42/341 (12%), Positives = 81/341 (23%), Gaps = 49/341 (14%)
Query: 129 DAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188
D A+ G YA + F D + A
Sbjct: 58 DHQWAAMITGDEAYAGSRNYYDLKDKAKELFNYDYII---------PAHQGRGAENILFP 108
Query: 189 GLINPGDEV-------ILFAPFYDSYEATLSMAGAK---------IKCITLRPPDFAIPI 232
L+ + + +D+ A + + G K T I
Sbjct: 109 VLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDI 168
Query: 233 EELKSTISKNTRAILMNTPHNPTGKM-----FTREELNVIASLCIENDVLVFSDEVY--- 284
++LK I+++ ++ T + L + + ++ + V D
Sbjct: 169 KKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCE 228
Query: 285 -----DKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA 339
+ + +I + + ++ G +
Sbjct: 229 NAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLAR 288
Query: 340 HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAI-----LVEGLNAVGFKVFPS 394
+ A + A EE + I L + L G +
Sbjct: 289 QRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYP 348
Query: 395 SGTYFVVVD-HTPFGHETDIAFCEY-----LIKEVGVVAIP 429
+G + V VD F L E GV A+
Sbjct: 349 TGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVE 389
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Score = 64.4 bits (155), Expect = 4e-12
Identities = 54/319 (16%), Positives = 96/319 (30%), Gaps = 30/319 (9%)
Query: 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEV 167
K L F P+ + D + + + E I S D
Sbjct: 18 KRDKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTD----F 73
Query: 168 DPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD 227
+ V+V +G E I +L D + F P Y Y GAK + L
Sbjct: 74 LSKNNVSVGNGADEIIYVMML----MFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDL 129
Query: 228 FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKL 287
+ + + P+NPTG +F REE+ I + + Y+
Sbjct: 130 RIPEV------NVGEGDVVFIPNPNNPTGHVFEREEIERI---LKTGAFVALDEAYYEFH 180
Query: 288 AFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT 347
YE + + K FSL ++G+ +A + +
Sbjct: 181 GESYVDF-----LKKYENLAVIRTFSKAFSLAAQRVGYVVASE---KFIDAYNRVRLPFN 232
Query: 348 STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPF 407
+ + +EE + ++ + L +G+++ S G + V
Sbjct: 233 VSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMGYRITDSRGNFVFV----FM 288
Query: 408 GHETDIAFCEYLIKEVGVV 426
E E+L + V
Sbjct: 289 EKEEKERLLEHLRTK-NVA 306
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 53.4 bits (127), Expect = 2e-08
Identities = 35/279 (12%), Positives = 73/279 (26%), Gaps = 31/279 (11%)
Query: 124 PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSG------LEVDPEKEVTVTS 177
V + +Q + + A + + DP E+ TS
Sbjct: 15 DPRVAEKMMQFMTM-DGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-EIVFTS 72
Query: 178 GCTEAIAATILG----LINPGDEVILFAPFYDSYEATLSMA---GAKIKCITLRPPDFAI 230
G TE+ I G G +I + + T G ++ + + I
Sbjct: 73 GATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGI-I 131
Query: 231 PIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE 290
++EL++ + +T + + +N G + I +C ++ D
Sbjct: 132 DLKELEAAMRDDTILVSIMHVNNEIGVVQDIAA---IGEMCRARGIIYHVDATQSVGKLP 188
Query: 291 MDHISIASLPGMYERTVTMNSLGKTFSLTG-----WKIGWAIAPPHLTWGVRQAHSFLTF 345
+D + + S K + G + + G +
Sbjct: 189 IDLS-------QLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSG 241
Query: 346 ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGL 384
A R + + L G+
Sbjct: 242 TLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGI 280
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Score = 52.5 bits (124), Expect = 4e-08
Identities = 42/304 (13%), Positives = 103/304 (33%), Gaps = 19/304 (6%)
Query: 131 AIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL 190
Q + N+Y A V P ++V V+ G E I I
Sbjct: 42 EFQLTQQTLNRYPECQP-KAVIENYAQYAG------VKP-EQVLVSRGADEGIELLIRAF 93
Query: 191 INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNT 250
PG + IL+ P + + ++ + ++ + + + + + +
Sbjct: 94 CEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLDG-VKVVYVCS 152
Query: 251 PHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMN 310
P+NPTG++ ++ + L ++V + + S+A Y +
Sbjct: 153 PNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIE----FCPQASLAGWLAEYPHLAILR 208
Query: 311 SLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELK 370
+L K F+L G + G+ +A + + + + +T A + + E +
Sbjct: 209 TLSKAFALAGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERVA 268
Query: 371 RDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430
+ + ++ ++ + S T +++ + A + L + G++
Sbjct: 269 QIIAEREYLIAALKEIPCVEQVFDSETNYILAR-----FKASSAVFKSLWDQ-GIILRDQ 322
Query: 431 SVFY 434
+
Sbjct: 323 NKQP 326
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Score = 51.8 bits (122), Expect = 7e-08
Identities = 43/311 (13%), Positives = 89/311 (28%), Gaps = 22/311 (7%)
Query: 127 VKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAAT 186
+ D + Y + + I ++ P+ +V SG T+
Sbjct: 16 ILDLMARDNMTQHAGYGQDSHCAKAARLIGELLER-------PDADVHFISGGTQTNLIA 68
Query: 187 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEEL------KSTIS 240
+ P + VI + S T ++ K +T PD + + ++ +
Sbjct: 69 CSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEH 128
Query: 241 KNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLP 300
++ + G +T++EL I++ C E+ + +F D A +
Sbjct: 129 MVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLAD 188
Query: 301 GMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALR 360
+ K + G I L R + +
Sbjct: 189 IARLTDMFYIGATKAGGMFGE--ALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVL 246
Query: 361 APETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLI 420
+ + EL + AIL GL A G ++ S + + L
Sbjct: 247 MKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPILEN-------TMIAELN 299
Query: 421 KEVGVVAIPTS 431
+ + +
Sbjct: 300 NDFDMYTVEPL 310
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} Length = 376 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Score = 51.1 bits (121), Expect = 1e-07
Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 14/131 (10%)
Query: 119 PNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSG 178
P + A + G G E +A + S
Sbjct: 8 PAMGAEE--LAAVKTVLDSGW--ITTGPKNQELEAAFCRLTGN---------QYAVAVSS 54
Query: 179 CTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKS 237
T + ++ L I GDEVI + + S + + GA + + + E +++
Sbjct: 55 ATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEA 114
Query: 238 TISKNTRAILM 248
I+ T+AI+
Sbjct: 115 AITPQTKAIIP 125
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 44/304 (14%), Positives = 86/304 (28%), Gaps = 24/304 (7%)
Query: 127 VKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKE---------VTVTS 177
+ + A QA+ + + G+ V +F + K + + VT+
Sbjct: 14 LTEEARQALLE----WGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTN 69
Query: 178 GCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIK-CITLRPPDFAIPIEELK 236
G EA A + L V++ + S AG I PD+AI E
Sbjct: 70 GAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFA 129
Query: 237 -----STISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM 291
+ L+ P G ++ IA +C E DV + + Y +
Sbjct: 130 QTIEETKKRGEVVLALITYPDGNYG---NLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPV 186
Query: 292 DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPM 351
I + + +M + G + + I + L
Sbjct: 187 SLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGAT 246
Query: 352 QWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVF-PSSGTYFVVVDHTPFGHE 410
A+ + + + + +G K + + ++ H +E
Sbjct: 247 IITLMASFPHVRERIKRWDEEVEKARRFA-AEMEKLGIKQLGDNPHNHDLMFFHAEVLYE 305
Query: 411 TDIA 414
Sbjct: 306 ISKK 309
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.3 bits (111), Expect = 2e-06
Identities = 33/299 (11%), Positives = 79/299 (26%), Gaps = 21/299 (7%)
Query: 142 YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL----GLINPGDEV 197
A + + +++ K +G+ V T +
Sbjct: 86 AAGSSLLNKITNSLVLNVIKLAGV--HSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYI 143
Query: 198 ILFAPFYDSYEATLSMAGAKIKCITLRP------PDFAIPIEELKSTISKNTRAILMNTP 251
I S ++ AG + I D +++ ++ + T
Sbjct: 144 IWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTA 203
Query: 252 HNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNS 311
+ L +A +C D+ + Y + + H+ I + + S
Sbjct: 204 CFAPRVP---DRLEELAVICANYDIPHVVNNAYGLQSSKCMHL-IQQGARVGRIDAFVQS 259
Query: 312 LGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYY----- 366
L K F + A + + + A+ + +L
Sbjct: 260 LDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKER 319
Query: 367 EELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGV 425
+E+ S + L E N + + + + + H+ + ++ V
Sbjct: 320 KEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQV 378
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Score = 44.4 bits (103), Expect = 1e-05
Identities = 45/309 (14%), Positives = 86/309 (27%), Gaps = 24/309 (7%)
Query: 130 AAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189
A+ G + Y + E A F K++ L T +I+
Sbjct: 18 KAMAQAEVGDDVYGEDPTINELERLAAETFGKEAAL---------FVPSGTMGNQVSIMA 68
Query: 190 LINPGDEVILFAPFYDS-YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILM 248
GDEVIL A + YE + + + + A+ ++++ I
Sbjct: 69 HTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPR 128
Query: 249 NTPHNPTGKMFTR-------EELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPG 301
+ E + I ++ E+ + V D A + + G
Sbjct: 129 TSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAG 188
Query: 302 MYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRA 361
+ + S G + +G + A A + A
Sbjct: 189 YADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGG-----GMRQAGVLAAAGIIA 243
Query: 362 PETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIK 421
+ LK D+ + + ++ T V++ F E L +
Sbjct: 244 LTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAH-GFIEAL-R 301
Query: 422 EVGVVAIPT 430
GV+A
Sbjct: 302 NSGVLANAV 310
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 12/144 (8%)
Query: 117 GFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVT 176
+P +D + ++ ++A+ G+ G V F A+
Sbjct: 7 AWPQYDDAE--RNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGA---------AHALAV 55
Query: 177 SGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEEL 235
+ T A+ + + + PG EVI+ A + S GA + + + + E +
Sbjct: 56 TNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAV 115
Query: 236 KSTISKNTRAILMNTPHNPTGKMF 259
+ ++ T+ I+ M
Sbjct: 116 AAAVTPRTKVIMPVHMAGLMADMD 139
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Score = 38.5 bits (88), Expect = 0.001
Identities = 44/336 (13%), Positives = 82/336 (24%), Gaps = 46/336 (13%)
Query: 89 KRLEKFKTTIFTQMSMLAIKHGAI----NLGQGFPNFDGPDFVKDAAIQAIRDGKNQYAR 144
K L+++ + Q + G G+ F +F G + A +
Sbjct: 5 KSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLIH 64
Query: 145 GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFY 204
A + D K V G + A L++ GD V+ +
Sbjct: 65 EGPAVAAEKHAARVYNAD--------KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNH 116
Query: 205 DS-YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREE 263
S Y + L+MAG + + + S + L +P + R
Sbjct: 117 KSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAK-VDPERAKWKRPF 175
Query: 264 LNVIASLCIENDVLVFSDEVYD-------KLAFEMDHISIASLPGMY------------- 303
+ L + + + EV + F+ + M
Sbjct: 176 RLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGP 235
Query: 304 ERTVTMNSLGKTFSLTGWKIG--------WAIAPPHLTWGVRQAHSFLTFATSTP----M 351
E + G+ +SF F +++P
Sbjct: 236 EDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMY 295
Query: 352 QWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV 387
A +L D + L
Sbjct: 296 AALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKA 331
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 434 | |||
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 100.0 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.96 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.91 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.89 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.89 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.87 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.87 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.84 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.83 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.81 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.8 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.8 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.79 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.78 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.77 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.74 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.74 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.73 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.73 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.71 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.7 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.69 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.69 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.69 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.69 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.68 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.66 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.65 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.65 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.64 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.64 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.63 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.63 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.63 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.62 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.62 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.61 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.61 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.61 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.6 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.59 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.59 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.59 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.57 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.56 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.55 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.53 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.52 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.52 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.49 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.49 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.47 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.45 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.37 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.35 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.09 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.81 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.78 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 98.67 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 98.57 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 86.52 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 83.45 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 83.24 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 82.58 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 81.77 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 81.3 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 81.18 |
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.5e-57 Score=446.43 Aligned_cols=322 Identities=34% Similarity=0.649 Sum_probs=293.0
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+.++|+|+.|+|++++|+.+++++.++++++.++|++..|.++||+++++++.+.+|..++++ +|++|+|+++++..++
T Consensus 30 G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~-~i~it~G~~~al~~~~ 108 (382)
T d1b5pa_ 30 GVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPE-ETIVTVGGSQALFNLF 108 (382)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGG-GEEEESHHHHHHHHHH
T ss_pred CCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccc-cceecCCHHHHHHHHH
Confidence 457999999999999999999999999998888999999999999999999999999999998 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
.+++++||.|++++|+|++|...++.+|.+++.+++++ +++.+|++.++++++++++++++++||||||.+++.+++++
T Consensus 109 ~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~ 188 (382)
T d1b5pa_ 109 QAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEA 188 (382)
T ss_dssp HHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHhCCCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCcchhCCHHHHHH
Confidence 99999999999999999999999999999999999875 46889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccC
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA 346 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~ 346 (434)
|+++|++||++||+||+|.++.|++.+...... ..+++++++||||.|+++|+|+||+++++++++.+...+.....+
T Consensus 189 l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~i~~~s~SK~~~~~GlR~G~~~~~~~~i~~~~~~~~~~~~~ 266 (382)
T d1b5pa_ 189 LARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV--APEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTS 266 (382)
T ss_dssp HHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT--CTTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHcCeEEEEEccccceecCCCCCCHHHc--CCCCEEEEecchhhccCcHhheEEEEECHHHHHHHHHHHHhcccC
Confidence 999999999999999999999998766544433 357999999999999999999999999999999998888888888
Q ss_pred CchHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhc
Q 013883 347 TSTPMQWAATAALRAP---ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEV 423 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~ 423 (434)
++.+.|.++..++... ..+++..++.++++++.+.+.+.+.|+.+.+|+||||+|+++.+.+. +...+.+.|++ +
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~gg~~~~~~~~~~~~-~~~~~~~~l~e-~ 344 (382)
T d1b5pa_ 267 PDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAP-DEVRAAERLLE-A 344 (382)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBTTEEEEECTTTCS-SHHHHHHHHHH-T
T ss_pred cccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcCCeEecCCceEEEeEeCCCCCC-CHHHHHHHHHH-C
Confidence 8999998888888763 45677888899999999999999999999999999999999876554 46667776654 5
Q ss_pred CeEEECCCCCC
Q 013883 424 GVVAIPTSVFY 434 (434)
Q Consensus 424 GV~v~pG~~F~ 434 (434)
||.+.||+.|+
T Consensus 345 gV~v~PG~~F~ 355 (382)
T d1b5pa_ 345 GVAVVPGTDFA 355 (382)
T ss_dssp TEECEESGGGT
T ss_pred CEEEEeCcccC
Confidence 99999999885
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=5e-57 Score=446.12 Aligned_cols=325 Identities=28% Similarity=0.562 Sum_probs=298.0
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+.++|||++|.|++++|+.++++++++++++.++|++..|.++||+++++++.+.+|..++++ +|++|+|+++++..++
T Consensus 29 g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~-~i~it~G~~~al~~~~ 107 (388)
T d1j32a_ 29 GIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGAD-NILVTNGGKQSIFNLM 107 (388)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEESHHHHHHHHHH
T ss_pred CCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCc-eEEEcCCHHHHHHHHH
Confidence 347899999999999999999999999988888999999999999999999999999999998 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
.++++|||+|++++|+|.+|...+...|++++.++.+. .++.+|+++++++++++++++++++||||||.+++.+++++
T Consensus 108 ~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~P~NPTG~~~~~~~~~~ 187 (388)
T d1j32a_ 108 LAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRA 187 (388)
T ss_dssp HHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHHhCCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCCCcccchhhhhh
Confidence 99999999999999999999999999999999999875 45889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCCC-ccccCCC-CCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccc
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMDH-ISIASLP-GMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT 344 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~~-~~~~~~~-~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~ 344 (434)
|+++|++||++||+||+|..+.+++.. .++.... ...++++++.||||.|+++|+|+||+++++++++.+.+......
T Consensus 188 l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~ 267 (388)
T d1j32a_ 188 IAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHST 267 (388)
T ss_dssp HHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTTT
T ss_pred hhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEECHHHHHHHHHhhhhcc
Confidence 999999999999999999999887643 3443332 22368999999999999999999999999999999988888788
Q ss_pred cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhc
Q 013883 345 FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEV 423 (434)
Q Consensus 345 ~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~ 423 (434)
.+++...|.++...+.+.++++++.+..++++++.+.+.|++. |+.+.+|+|+||+|++++..+. ++.+++++|++++
T Consensus 268 ~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~gg~~l~~~l~~~~~-~~~~~~~~ll~~~ 346 (388)
T d1j32a_ 268 SNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGR-SSLDFCSELLDQH 346 (388)
T ss_dssp CSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGGTC-CHHHHHHHHHHHH
T ss_pred ccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCCceEEEEEECCCCCC-CHHHHHHHHHHhC
Confidence 8999999999999999888899999999999999999999987 8999999999999999865443 6789999999999
Q ss_pred CeEEECCCCCC
Q 013883 424 GVVAIPTSVFY 434 (434)
Q Consensus 424 GV~v~pG~~F~ 434 (434)
||.+.||+.|+
T Consensus 347 gV~v~pG~~F~ 357 (388)
T d1j32a_ 347 QVATVPGAAFG 357 (388)
T ss_dssp CEECEEGGGGT
T ss_pred CEEEEeccccC
Confidence 99999999885
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=8.6e-56 Score=437.19 Aligned_cols=347 Identities=32% Similarity=0.588 Sum_probs=310.9
Q ss_pred HHHHhhhccccHHHHHHHHh-hcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCC
Q 013883 87 VAKRLEKFKTTIFTQMSMLA-IKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGL 165 (434)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~ 165 (434)
+++|++..+.+.++++.+.+ ..+++|||+.|+|++++|+.+++++.+++.++..+|++..|+++||+++++++.+.++.
T Consensus 2 ~s~~~~~~~~s~ir~~~~~~~~~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~ 81 (388)
T d1gdea_ 2 LSDRLELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGI 81 (388)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHCTTCEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCC
T ss_pred hhhhhhhCCccHHHHHHHHHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccc
Confidence 45666666666667666654 45689999999999999999999999999888889999999999999999999887776
Q ss_pred CCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCc
Q 013883 166 EVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTR 244 (434)
Q Consensus 166 ~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~ 244 (434)
...++++|++|+|+++++..++.+++++||+|++++|+|..|...+...|++++.+|+++ +++++|+++|+++++++++
T Consensus 82 ~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 161 (388)
T d1gdea_ 82 EADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTR 161 (388)
T ss_dssp CCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEE
T ss_pred cCCChheeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCccCCe
Confidence 555554899999999999999999999999999999999999999999999999999975 4689999999999999999
Q ss_pred EEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChhhcccccee
Q 013883 245 AILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKTFSLTGWKI 323 (434)
Q Consensus 245 ~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~ 323 (434)
++++++||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ..++..+...++++++++||||.||++|+|+
T Consensus 162 ~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~ 241 (388)
T d1gdea_ 162 ALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRL 241 (388)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCC
T ss_pred EEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccE
Confidence 999999999999999999999999999999999999999999988764 4456667666789999999999999999999
Q ss_pred eeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEe
Q 013883 324 GWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVV 401 (434)
Q Consensus 324 G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 401 (434)
||++++++++..+.........+.+.+.|.++..+|.+. .++++..+..++++++.+.+.|...++.+.+|+|++|+|
T Consensus 242 G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~fl~ 321 (388)
T d1gdea_ 242 GFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIF 321 (388)
T ss_dssp EEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTEEC
T ss_pred EEEEeeccchhhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhccccccCCCceEEEE
Confidence 999999999999999888888999999999999999874 345777888999999999999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 402 VDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 402 ~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+++...+. ++.+++++|++++||.++||+.|+
T Consensus 322 ~~l~~~~~-~~~~~~~~ll~e~gV~v~PG~~F~ 353 (388)
T d1gdea_ 322 PRIRDTGL-TSKKFSELMLKEARVAVVPGSAFG 353 (388)
T ss_dssp CBCGGGTC-CHHHHHHHHHHHTCEECEEGGGGC
T ss_pred EECCCCCC-CHHHHHHHHHHhCCEEEEechhhC
Confidence 99865443 688999999999999999999885
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.3e-55 Score=431.42 Aligned_cols=344 Identities=40% Similarity=0.730 Sum_probs=316.4
Q ss_pred hhhccccHHHHHHHHhhcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCC
Q 013883 91 LEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPE 170 (434)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~ 170 (434)
+......++.++.+++.+++.|||+.|.|++++|+.+++++.+++.++.++|++..|+++||+++++++++.+|.+++++
T Consensus 8 ~~~~~~~~~~~~~~~a~~~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~ 87 (382)
T d1u08a_ 8 LPQLGTTIFTQMSALAQQHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDAD 87 (382)
T ss_dssp CCCCCCCHHHHHHHHHHHTTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTT
T ss_pred CCCCCCcHHHHHHHHhccCCCEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 44556677888888888889999999999999999999999999998888999999999999999999999999999887
Q ss_pred CcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecC
Q 013883 171 KEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNT 250 (434)
Q Consensus 171 ~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~ 250 (434)
++|++|+|+++++.+++++++++||.|++++|+|+.+...+...|..++.++.+..++.+|++++++.+.++++++++++
T Consensus 88 ~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~ 167 (382)
T d1u08a_ 88 SDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNT 167 (382)
T ss_dssp TTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEES
T ss_pred ceEEeccchHHHHHHHHhhcccccceEEEecccccchhhhhhhccccceecccccccccCCHHHHhhhhccCccEEEECC
Confidence 56999999999999999999999999999999999999999999999999998877888999999999999999999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCC-ccccCCCCCCCceEEEccCChhhccccceeeeEEeC
Q 013883 251 PHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH-ISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP 329 (434)
Q Consensus 251 p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~-~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~ 329 (434)
||||||.+++.+++++|+++|++++++++.|+.|..+.+.+.. ..........++++++.|+||.++++|+|+||++++
T Consensus 168 P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~ 247 (382)
T d1u08a_ 168 PHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAP 247 (382)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECC
T ss_pred CCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhcc
Confidence 9999999999999999999999999999999999998877533 233333345678999999999999999999999999
Q ss_pred hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCC
Q 013883 330 PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGH 409 (434)
Q Consensus 330 ~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (434)
+++++.+.+.+....++.+.+.|.++..+|++.+++++++++.++++++.+.+.++..|+.+.+++||||+|++++..+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~gg~~~~~~~~~~~~ 327 (382)
T d1u08a_ 248 APISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVST 327 (382)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEEECTTTCC
T ss_pred chhHHHHHhhhcccccccccccccccccccccchHHHHHHHHHHHhhhhhhhhhhccCCcEEecCCceEEEEEecCCCCC
Confidence 99999999888888899999999999999998888999999999999999999999999999999999999999876665
Q ss_pred CCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 410 ETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 410 ~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
.++.+|+++|++++||.++||+.|+
T Consensus 328 ~d~~e~~~~ll~e~gV~v~PG~~F~ 352 (382)
T d1u08a_ 328 LDDVEFCQWLTQEHGVAAIPLSVFC 352 (382)
T ss_dssp SCHHHHHHHHHHHSCEECEEGGGGC
T ss_pred CCHHHHHHHHHHHCCEEEEcchhhC
Confidence 6889999999999999999999885
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=9.1e-55 Score=434.12 Aligned_cols=346 Identities=38% Similarity=0.695 Sum_probs=309.6
Q ss_pred HHhhhccccHHHHHHHHhhcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcC---CCCCCCCCCcHHHHHHHHHHHHhhcCC
Q 013883 89 KRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDG---KNQYARGHGVPEFNSAIASRFKKDSGL 165 (434)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~ 165 (434)
+|++..+++.+.++.+++.++++|||+.|.|++++|+.+++++.+++.+. .++|++..|.++||+++|+++.+.+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~ 85 (418)
T d2r5ea1 6 KRYQGSTKSVWVEYIQLAAQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDR 85 (418)
T ss_dssp GGGTTCCCCHHHHHHHHHHHHCCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTS
T ss_pred hhhcCCCCCHHHHHHHHhcCCCCEEccCCCCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 45666777777788888777799999999999999999999999998763 357999999999999999999999999
Q ss_pred CCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCC---------CCCCHHHHH
Q 013883 166 EVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD---------FAIPIEELK 236 (434)
Q Consensus 166 ~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~---------~~~d~~~l~ 236 (434)
.+++.++|++|+|+++++..++++++++||.|++++|+|+.|...+...|.+++.|++++++ +.++++.+.
T Consensus 86 ~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 165 (418)
T d2r5ea1 86 TINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELE 165 (418)
T ss_dssp CCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHH
T ss_pred CCCccceEEEcCCCchhhhhhhhhccccccceeccccccchhhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHh
Confidence 99864489999999999999999999999999999999999999999999999999986532 457889999
Q ss_pred hhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCChh
Q 013883 237 STISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGKT 315 (434)
Q Consensus 237 ~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~ 315 (434)
+....+++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++. ..++..+.+..++++++.|+||.
T Consensus 166 ~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~ 245 (418)
T d2r5ea1 166 ALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKT 245 (418)
T ss_dssp HHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHH
T ss_pred hhhhccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCcc
Confidence 98888999999999999999999999999999999999999999999999998764 34566666677899999999999
Q ss_pred hccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhC-------ChHHHHHHHHHHHHHHHHHHHHhhhCC
Q 013883 316 FSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRA-------PETYYEELKRDYSAKKAILVEGLNAVG 388 (434)
Q Consensus 316 ~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~-------~~~~~~~~~~~~~~~~~~l~~~L~~~g 388 (434)
++++|+|+||+++++++++.+.+.+....++.+.+.|.+++..+.. .++|++++++.++.+|+.+.+.|++.|
T Consensus 246 ~~~pGlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g 325 (418)
T d2r5ea1 246 FSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVG 325 (418)
T ss_dssp TTCGGGCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCcccccccccchhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhcC
Confidence 9999999999999999999999988888889999999888877643 357889999999999999999999999
Q ss_pred CEeecCCeeEEEeeecCCC----------CCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 389 FKVFPSSGTYFVVVDHTPF----------GHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+.+.+|+||||+|+++... ...++.+|+++|++++||.++||+.||
T Consensus 326 ~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~ 381 (418)
T d2r5ea1 326 MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFY 381 (418)
T ss_dssp CEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGS
T ss_pred CcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhC
Confidence 9999999999999987532 223678999999999999999999986
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-54 Score=430.37 Aligned_cols=346 Identities=38% Similarity=0.706 Sum_probs=308.7
Q ss_pred HHhhhccccHHHHHHHHhhcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcC--CCCCCCCCCcHHHHHHHHHHHHhhcCCC
Q 013883 89 KRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDG--KNQYARGHGVPEFNSAIASRFKKDSGLE 166 (434)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~l~~~~g~~ 166 (434)
+|++......+.++.+++.++++|||++|.|++++|+.+.+++.+++.++ .++|++..|+++||+++++++++.+|.+
T Consensus 5 ~r~~~~~~~~~~~~~~~~~~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~ 84 (418)
T d1w7la_ 5 RRLDGIDYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQE 84 (418)
T ss_dssp GGGTTCCCCTHHHHHHHHHTSCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred ccccCCCCCHHHHHHHHhCCCCCEECCCCCCCCCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 45555556666777777888899999999999999999999999998764 4679999999999999999999999999
Q ss_pred CCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-----------CCCCCCHHHH
Q 013883 167 VDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-----------PDFAIPIEEL 235 (434)
Q Consensus 167 ~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-----------~~~~~d~~~l 235 (434)
++++++|++|+|+++++..++++++++||.|++++|+|+.|...+...|++++.++..+ .++.+|.+.+
T Consensus 85 ~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~ 164 (418)
T d1w7la_ 85 IDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMEL 164 (418)
T ss_dssp CCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHH
T ss_pred CCcccceeeccCcHHHHHHHHHhhccCCceeeccccccchhHHHHHHcCCEeeccccccccccccccccccCcccchhhh
Confidence 88644899999999999999999999999999999999999999999999999988753 2456788888
Q ss_pred HhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC-CccccCCCCCCCceEEEccCCh
Q 013883 236 KSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD-HISIASLPGMYERTVTMNSLGK 314 (434)
Q Consensus 236 ~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK 314 (434)
.....++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++. ..++..+.+..++++++.|+||
T Consensus 165 ~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK 244 (418)
T d1w7la_ 165 AGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGK 244 (418)
T ss_dssp HHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHH
T ss_pred hccccccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCc
Confidence 888888999999999999999999999999999999999999999999999998874 4567777777789999999999
Q ss_pred hhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC-------hHHHHHHHHHHHHHHHHHHHHhhhC
Q 013883 315 TFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP-------ETYYEELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 315 ~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~-------~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (434)
.++++|+|+||++++++++..+++.+....++++.+.|.++..+|.+. .++++.+++.++++++.+.+.|++.
T Consensus 245 ~~~~pG~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 324 (418)
T d1w7la_ 245 TFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV 324 (418)
T ss_dssp HTTCGGGCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCCCcccccccchhhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhc
Confidence 999999999999999999999999998889999999999998888652 4578889999999999999999999
Q ss_pred CCEeecCCeeEEEeeecCC-----------CCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 388 GFKVFPSSGTYFVVVDHTP-----------FGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
|+++.+|+||||+|++++. .+..++.+++++|++++||.++||+.||
T Consensus 325 g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~ 382 (418)
T d1w7la_ 325 GLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFY 382 (418)
T ss_dssp TCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGS
T ss_pred CCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhc
Confidence 9999999999999998642 1223477899999999999999999985
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2e-53 Score=421.24 Aligned_cols=325 Identities=29% Similarity=0.502 Sum_probs=289.2
Q ss_pred cCCeeEeCCCCC---CCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFP---NFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p---~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+.++|+|++|+| ++++|+.+++++.++++++.++|++..|.++||+++++++.+.+|..++++ +|++++|+++++.
T Consensus 29 G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~-~i~i~~G~~~~~~ 107 (395)
T d1xi9a_ 29 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPD-DVRVTAAVTEALQ 107 (395)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEESHHHHHHH
T ss_pred CCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhccccccccc-ccccccccchhhh
Confidence 457999999998 788999999999999988888899999999999999999999999999998 8999999999999
Q ss_pred HHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHH
Q 013883 185 ATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREE 263 (434)
Q Consensus 185 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~ 263 (434)
+++.+++++||+|++++|+|+.|...++..|++++.+++.. +++.+|++.+++.+.++++++++++||||||.+++.++
T Consensus 108 ~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~l~~P~NPTG~~~s~~~ 187 (395)
T d1xi9a_ 108 LIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKT 187 (395)
T ss_dssp HHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred hhhhhhcCCCCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhcccccEEEecCCCCCccchhhHHH
Confidence 99999999999999999999999999999999999999764 56889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC--hhhHHHHHHH--
Q 013883 264 LNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP--PHLTWGVRQA-- 339 (434)
Q Consensus 264 l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~--~~~~~~l~~~-- 339 (434)
+++|+++|++|+++||.||+|.++.|++.......+.. .+++++++||||.|+++|+|+||+++. ...+..+.+.
T Consensus 188 ~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~ 266 (395)
T d1xi9a_ 188 LEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTK-DVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAID 266 (395)
T ss_dssp HHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCS-SSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHH
T ss_pred HHHHHhhhhhcCeeEEeccccccccccccccchhhcCC-CCCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHHH
Confidence 99999999999999999999999998876555444433 578999999999999999999998753 3333333322
Q ss_pred -hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC-CEeecCCeeEEEeeecCCCCCCCHHHHHH
Q 013883 340 -HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG-FKVFPSSGTYFVVVDHTPFGHETDIAFCE 417 (434)
Q Consensus 340 -~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (434)
......+++.+.|.++..+|.+.++|+++.++.++++++.+.+.|++.+ +.+.+|+|+||+|+++......++.+++.
T Consensus 267 ~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~ 346 (395)
T d1xi9a_ 267 RLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPWKNDKEFVL 346 (395)
T ss_dssp HHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCSCSSHHHHHH
T ss_pred HhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCceecCCCeeEEEeEECCCCCCCCHHHHHH
Confidence 2234577889999999999998888999999999999999999999985 57788999999999986544457889999
Q ss_pred HHHHhcCeEEECCCCCC
Q 013883 418 YLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 418 ~Ll~~~GV~v~pG~~F~ 434 (434)
+|++++||.+.||+.|+
T Consensus 347 ~ll~~~gV~v~PG~~Fg 363 (395)
T d1xi9a_ 347 DVLHNAHVLFVHGSGFG 363 (395)
T ss_dssp HHHHHHCEECEEGGGGC
T ss_pred HHHHhCCEEEEcChhhC
Confidence 99999999999999885
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.1e-52 Score=412.94 Aligned_cols=319 Identities=30% Similarity=0.571 Sum_probs=290.4
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+.++|||+.|.|++++|+.+++++.+++.++.++|++..|.++||+++++++.+.+|..++++ +|++|+|+++++..++
T Consensus 27 G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~-~i~~t~G~~~al~~~~ 105 (375)
T d1o4sa_ 27 GEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPD-QVVVTNGAKQALFNAF 105 (375)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGG-GEEEESHHHHHHHHHH
T ss_pred CCCeEECCCcCCCCCCCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccc-cccccCcHHHHHHHHH
Confidence 457999999999999999999999999888888999999999999999999999999999998 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNV 266 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~ 266 (434)
.+++++||+|++++|+|+.|...+...|...+.++.++ .++.+|.+.++....++++++++++||||||.+++.+++++
T Consensus 106 ~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPTG~~~s~~~~~~ 185 (375)
T d1o4sa_ 106 MALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEG 185 (375)
T ss_dssp HHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHHhCCCCEEEEccCccccchhhhhccccccccccccccccccchhHHHHHhhccCccEEEEeCCCCCccCCCCHHHHHH
Confidence 99999999999999999999999999999999998876 45788999999999889999999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccC
Q 013883 267 IASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFA 346 (434)
Q Consensus 267 i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~ 346 (434)
|+++|++|+++||+||+|.++.+++.........+..+++++++||||.++++|+|+||+++++++++.+...+......
T Consensus 186 i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~~~~~~~~~~~~~~ 265 (375)
T d1o4sa_ 186 LVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTTSC 265 (375)
T ss_dssp HHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHHTCS
T ss_pred HHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccccccccccchhhhhhhhcccccc
Confidence 99999999999999999999988876665555666789999999999999999999999999999999988888777777
Q ss_pred CchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 347 TSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
.+...+..+...++.. ....++.++++++.+.+.|++.|+++.+|+|+||+|++++. ++.+++.+|++++||.
T Consensus 266 ~~~~~~~~~~~~~~~~---~~~~~~~~~~r~~~~~~~l~~~g~~~~~p~gg~f~~~~~~~----~~~~~~~~ll~~~gV~ 338 (375)
T d1o4sa_ 266 INTVAQYAALKALEVD---NSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKVRG----DDVKFCERLLEEKKVA 338 (375)
T ss_dssp CCHHHHHHHHHHTTCC---CHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBSSEEEEECSS----CHHHHHHHHHHHHCEE
T ss_pred ccccchhhhhhhcccc---hhhhHHHHHHHHHHHHHHHHhcCceEecCCccEEEEEECCC----CHHHHHHHHHHhCCEE
Confidence 8888887777766653 34556788999999999999999999999999999999853 5789999999989999
Q ss_pred EECCCCCC
Q 013883 427 AIPTSVFY 434 (434)
Q Consensus 427 v~pG~~F~ 434 (434)
++||+.|+
T Consensus 339 v~pG~~F~ 346 (375)
T d1o4sa_ 339 LVPGSAFL 346 (375)
T ss_dssp CEEGGGGT
T ss_pred EEEccccC
Confidence 99999885
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.4e-50 Score=398.20 Aligned_cols=320 Identities=23% Similarity=0.426 Sum_probs=281.0
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+.++|||+.|+|++++|+.+.+++.++. .+.+.|++..|.++||+++++++.+.+|..++++ +|++|+|+++++..++
T Consensus 27 g~~vi~l~~G~p~~~~p~~~~~al~~~~-~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~-~I~it~G~~~~l~~~~ 104 (389)
T d2gb3a1 27 GVRIHHLNIGQPDLKTPEVFFERIYENK-PEVVYYSHSAGIWELREAFASYYKRRQRVDVKPE-NVLVTNGGSEAILFSF 104 (389)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHHHHTC-CSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGG-GEEEESHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHhcC-CCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccc-eEEecccccccccccc
Confidence 3478999999999999999999887654 3467899999999999999999999999999999 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
.+++++||.|++++|+|+.+...+...|..++.++.+.+++..+.+.+...+.++++++++++||||||.+++.+++++|
T Consensus 105 ~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i 184 (389)
T d2gb3a1 105 AVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYL 184 (389)
T ss_dssp HHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred cccccCCCeEEEeCCCCccccccccccCccccccccccccccchhhhhhhhcccCccEEEeCCCCccccccchHHHHHHH
Confidence 99999999999999999999999999999999999887666666777888888899999999999999999999999999
Q ss_pred HHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCC
Q 013883 268 ASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT 347 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~ 347 (434)
+++|++||++||+||+|.++.+++...+.... ..++++++.|+||.++++|+|+||++++.+.+............+.
T Consensus 185 ~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~--~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~~~~~~~~~ 262 (389)
T d2gb3a1 185 VEIAERHGLFLIVDEVYSEIVFRGEFASALSI--ESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAP 262 (389)
T ss_dssp HHHHHHTTCEEEEECTTTTCBCSSCCCCGGGS--CCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSCCC
T ss_pred HhhcccCCEEEEEecccccccccccccccccc--ccccccccccccccccCcccceeeeeccchhHHHHHhhhhhccccc
Confidence 99999999999999999999988765544433 4578999999999999999999999998765554444444456777
Q ss_pred chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCC-EeecCCeeEEEeeecCCCCCCCHHHHHHHHHHh----
Q 013883 348 STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGF-KVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKE---- 422 (434)
Q Consensus 348 ~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~---- 422 (434)
+.+.|.++..++...+++++++++.++++++.+.+.|+++|+ .+..+++++|+|++++. .++.+++++|+++
T Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~lp~---~~~~~~~~~ll~e~~l~ 339 (389)
T d2gb3a1 263 PLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPV---EDAEEFARWMLTDFNMD 339 (389)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECSS---SCHHHHHHHHHHSCCBT
T ss_pred cccccccccccccccchhcccccccccccchhhhhhhhhhccccccCCCceEEEEEeCCC---CCHHHHHHHHHHhhhhh
Confidence 788888888888878889999999999999999999999975 46788999999999843 2688999999875
Q ss_pred -cCeEEECCCCCC
Q 013883 423 -VGVVAIPTSVFY 434 (434)
Q Consensus 423 -~GV~v~pG~~F~ 434 (434)
+||.+.||+.||
T Consensus 340 ~~~v~v~pg~~f~ 352 (389)
T d2gb3a1 340 GETTMVAPLRGFY 352 (389)
T ss_dssp TEEEECEEGGGGC
T ss_pred hCCEEEEeCcccc
Confidence 488999999886
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=2.6e-49 Score=393.76 Aligned_cols=323 Identities=22% Similarity=0.366 Sum_probs=268.8
Q ss_pred CeeEeCCCCCCCCC----cHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHhhcC------CCCCCCCcEEEcCC
Q 013883 110 GAINLGQGFPNFDG----PDFVKDAAIQAIRDG-KNQYARGHGVPEFNSAIASRFKKDSG------LEVDPEKEVTVTSG 178 (434)
Q Consensus 110 ~~i~l~~g~p~~~~----~~~v~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g------~~~~~~~~i~~t~G 178 (434)
++|||++|+|++++ ++.+.+++.+++... .++|++..|+++||+++++++.+.++ ..++++ +|++|+|
T Consensus 31 ~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~-~I~it~G 109 (412)
T d1bw0a_ 31 PIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKD-NVVLCSG 109 (412)
T ss_dssp CCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGG-GEEEESH
T ss_pred CcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCC-eEEEecc
Confidence 68999999988654 456667777766653 46899999999999999999998763 457788 8999999
Q ss_pred hHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCCCCCHHHHHhhcccCCcEEEecCCCCCccc
Q 013883 179 CTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDFAIPIEELKSTISKNTRAILMNTPHNPTGK 257 (434)
Q Consensus 179 ~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~ 257 (434)
+++++..++++++++||+|++++|+|+.|...++..|++++.+|+++ .++.++++.+++.+.++++++++++||||||.
T Consensus 110 ~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~np~NPtG~ 189 (412)
T d1bw0a_ 110 GSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGS 189 (412)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred cccchhhhhhhhhccccceeeeeccchhhhhhhhccCccccccccccccccchhhHHHHhhhhccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999976 45789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCc-cccCC---CCCCCceEEEccCChhhccccceeeeEEeChh--
Q 013883 258 MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHI-SIASL---PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH-- 331 (434)
Q Consensus 258 ~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~-~~~~~---~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~-- 331 (434)
+++.+++++|+++|++||++||+||+|.++.|++... ..... .....++++++||||.++++|+|+||++++++
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~ 269 (412)
T d1bw0a_ 190 NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHG 269 (412)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTC
T ss_pred cchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCCcccccccchhh
Confidence 9999999999999999999999999999999987432 22222 12345788999999999999999999998643
Q ss_pred ----hHHHHHHHhhccccCCchHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecC
Q 013883 332 ----LTWGVRQAHSFLTFATSTPMQWAATAAL-RAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHT 405 (434)
Q Consensus 332 ----~~~~l~~~~~~~~~~~~~~~q~a~~~~L-~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 405 (434)
++........ ...+++...|.++...+ ...++++++++++++++|+.+.+.|.+. |+.+..|+||||+|+++.
T Consensus 270 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~ 348 (412)
T d1bw0a_ 270 NGPSFLEGLKRVGM-LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRID 348 (412)
T ss_dssp SCHHHHHHHHHHHH-HHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEEC
T ss_pred cchhhhhhhccccc-cccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCceecCCCCceEEEEeCC
Confidence 2333333332 23445555555555444 4567899999999999999999999774 999999999999998864
Q ss_pred CC---CCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 406 PF---GHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 406 ~~---~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
.. +..++.+|+++|++++||.++||+.|+
T Consensus 349 ~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg 380 (412)
T d1bw0a_ 349 LEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH 380 (412)
T ss_dssp GGGBSSCCSHHHHHHHHHHHHCEECEEGGGGT
T ss_pred hhhcCCCCCHHHHHHHHHHhCCEEEEeccccC
Confidence 21 344788999999999999999999885
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=1e-49 Score=394.32 Aligned_cols=323 Identities=18% Similarity=0.291 Sum_probs=274.8
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+.++|+|++|+|++++|+.+++++.++++++.++|++ |.++||+++++++.+++|.+++++ +|++|+|+++++.+++
T Consensus 30 g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~~--g~~~Lr~aia~~~~~~~g~~~~~~-~I~vt~G~~~al~~~~ 106 (394)
T d1c7na_ 30 GNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTG--PTEEYKKTVKKWMKDRHQWDIQTD-WIINTAGVVPAVFNAV 106 (394)
T ss_dssp CTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBC--CCHHHHHHHHHHHHHHHCCCCCGG-GEEEESSHHHHHHHHH
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCcCCCC--CCHHHHHHHHHHHHHhcCCCCCCc-ceEeeccchhhhhhhh
Confidence 3478999999999999999999999999888788965 779999999999999999999998 8999999999999999
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC--CCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP--PDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREEL 264 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~--~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l 264 (434)
+++++|||+|+++.|.|.++...+...|.+.+.++... ..+.+|.+.++.++.. +++++++++||||||.+++.+++
T Consensus 107 ~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l 186 (394)
T d1c7na_ 107 REFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDEL 186 (394)
T ss_dssp HHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHH
T ss_pred ccccccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhccccceEEEecccccccceeccHHHh
Confidence 99999999999999999999999999999999888753 2356898988887754 78999999999999999999999
Q ss_pred HHHHHHHHHcCcEEEEcCcCCccccCCCCccc-cCC-CCCCCceEEEccCChhhccccceeeeEEeCh-hhHHHHHHHhh
Q 013883 265 NVIASLCIENDVLVFSDEVYDKLAFEMDHISI-ASL-PGMYERTVTMNSLGKTFSLTGWKIGWAIAPP-HLTWGVRQAHS 341 (434)
Q Consensus 265 ~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~-~~~-~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~-~~~~~l~~~~~ 341 (434)
++|+++|++||++||+||+|.++.|++..... ... ....++++++.|+||.++++|+|+||+++++ .+.+.++....
T Consensus 187 ~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~ 266 (394)
T d1c7na_ 187 QKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRD 266 (394)
T ss_dssp HHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHH
T ss_pred hhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccccChhhhhhhhhhhh
Confidence 99999999999999999999999988654322 222 2235789999999999999999999999875 45566666665
Q ss_pred ccccCCchHHH-HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC--CCEeecCCeeEEEeeecCCCCCCCHHHHHHH
Q 013883 342 FLTFATSTPMQ-WAATAALRAPETYYEELKRDYSAKKAILVEGLNAV--GFKVFPSSGTYFVVVDHTPFGHETDIAFCEY 418 (434)
Q Consensus 342 ~~~~~~~~~~q-~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (434)
....++....+ .++.......+++.++++..++++++.+.+.++.. ++.+.+++|+||+|++++..+. ++.+++++
T Consensus 267 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g~~~~~~~~~~~~~-~~~~~~~~ 345 (394)
T d1c7na_ 267 ATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKM-DHKAMEEF 345 (394)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGCC-CHHHHHHH
T ss_pred hccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhccccceeecCCCceeEEEEECCCCCC-CHHHHHHH
Confidence 55555444444 33444444567888999999999999999988763 7888889999999999865554 68899999
Q ss_pred HHHhcCeEEECCCCCC
Q 013883 419 LIKEVGVVAIPTSVFY 434 (434)
Q Consensus 419 Ll~~~GV~v~pG~~F~ 434 (434)
|++++||.++||+.|+
T Consensus 346 Ll~~~gV~v~pG~~Fg 361 (394)
T d1c7na_ 346 MIHKAQIFFDEGYIFG 361 (394)
T ss_dssp HHHTTCCCCEEGGGGC
T ss_pred HHHhCCEEEEcchhhC
Confidence 9999999999999884
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=3.6e-50 Score=398.58 Aligned_cols=343 Identities=16% Similarity=0.121 Sum_probs=284.8
Q ss_pred CCCcchhhhccCCchHHHHHhhhccccHHHHHHHHhhcCCeeEeCCCC-C--CC--CCcHHHHHHHHHHHHcCC-CCCCC
Q 013883 71 TNQSDTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGF-P--NF--DGPDFVKDAAIQAIRDGK-NQYAR 144 (434)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~-p--~~--~~~~~v~~~~~~~~~~~~-~~Y~~ 144 (434)
+.|.++++++.++++++++++++.+. +++|||++|. + +. +..+.|+++..+.+.++. ++|+|
T Consensus 2 ~~~~~~~~~p~d~i~~~~~~~~~d~~------------~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~ 69 (401)
T d7aata_ 2 SWWSHVEMGPPDPILGVTEAFKRDTN------------SKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLP 69 (401)
T ss_dssp CSSTTCCCCCCCHHHHHHHHHHHCCC------------TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCC
T ss_pred CccccCCCCCCChHHHHHHHHhCCCC------------CCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCC
Confidence 57888999999999999988877654 3789999993 3 32 234778888877777654 57999
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCCh-----HHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEE
Q 013883 145 GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGC-----TEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIK 219 (434)
Q Consensus 145 ~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~-----~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~ 219 (434)
..|+++||+++++++.+.++..++++ +|+++.|+ .+++..+++.+++|||+|++++|+|++|..++...|++++
T Consensus 70 ~~G~~~lr~aia~~~~~~~~~~~~~~-~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~ 148 (401)
T d7aata_ 70 IAGLADFTRASAELALGENSEAFKSG-RYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQ 148 (401)
T ss_dssp TTCCHHHHHHHHHHHHCTTCHHHHTT-CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEE
T ss_pred CCCCHHHHHHHHHHHhccCCcccCcC-ceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcCCeEE
Confidence 99999999999999999888877777 67665443 3577888889999999999999999999999999999999
Q ss_pred EEEcCC-CCCCCCHHHHHhhcc---cCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCcc
Q 013883 220 CITLRP-PDFAIPIEELKSTIS---KNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHIS 295 (434)
Q Consensus 220 ~v~~~~-~~~~~d~~~l~~~i~---~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~ 295 (434)
.+|+.+ +++.+|++.+++.+. ++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++....
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~ 228 (401)
T d7aata_ 149 AYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRD 228 (401)
T ss_dssp EEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHH
T ss_pred EEeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccc
Confidence 999865 457789998888774 4788999999999999999999999999999999999999999999999864321
Q ss_pred ---ccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHh-------hccccCCchHHHHHHHHHHhCC---
Q 013883 296 ---IASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAH-------SFLTFATSTPMQWAATAALRAP--- 362 (434)
Q Consensus 296 ---~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~-------~~~~~~~~~~~q~a~~~~L~~~--- 362 (434)
...+....++++++.|+||.++++|||+||++++.++++.+.+.. +....+.+.+.|.+++..|.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~ 308 (401)
T d7aata_ 229 AWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELR 308 (401)
T ss_dssp THHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHH
T ss_pred hhhhhhhhhhhcccceeEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHH
Confidence 122223456789999999999999999999999988776654433 3335678889999999999874
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHhhhCC----CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 363 ---ETYYEELKRDYSAKKAILVEGLNAVG----FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 363 ---~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
.+++++++++|+++|+.+.+.|++++ |.++++++|||+|+++ +.+++++|++++||++.||..+
T Consensus 309 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l-------s~e~~~~L~~e~gV~~~pg~Ri 379 (401)
T d7aata_ 309 KEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGL-------KPEQVERLTKEFSIYMTKDGRI 379 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCC-------CHHHHHHHHHHHCEECCTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceECCCCeEEEecCC-------CHHHHHHHHHhCCEEECCCcEE
Confidence 35567888999999999999999875 6677899999999876 3478899999999999999743
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.7e-49 Score=389.10 Aligned_cols=328 Identities=38% Similarity=0.672 Sum_probs=288.2
Q ss_pred HhhhccccHHHHHHHHhhcCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCC
Q 013883 90 RLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDP 169 (434)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~ 169 (434)
|.++.+.+++..+..++.+.+.|||++|.|++++|+.+.+++.+++.+ .++|++..|.++||++++++++ +++
T Consensus 6 ~~~~~~~~~~~~~~~la~~~~~I~ls~g~p~~~~p~~i~~al~~~l~~-~~~Y~~~~G~~elr~aiA~~~~------~~~ 78 (368)
T d1v2da_ 6 RTEAAKESIFPRMSGLAQRLGAVNLGQGFPSNPPPPFLLEAVRRALGR-QDQYAPPAGLPALREALAEEFA------VEP 78 (368)
T ss_dssp GGGGC---CHHHHHHHHHHHTCEECCCCSCSSCCCHHHHHHHHHHTTT-SCSCCCTTCCHHHHHHHHHHHT------SCG
T ss_pred hhhhcCCCHHHHHHHHhccCCCEEecCCCCCCCCCHHHHHHHHHHhhc-ccCCCCCcCCHHHHHHHHhhcc------cCC
Confidence 455666777888888787789999999999999999999999988754 4789999999999999999986 778
Q ss_pred CCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC--CCCCCCHHHHHhhcccCCcEEE
Q 013883 170 EKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP--PDFAIPIEELKSTISKNTRAIL 247 (434)
Q Consensus 170 ~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~--~~~~~d~~~l~~~i~~~~~~i~ 247 (434)
+ +|++|+|+++++..++.+++++||.|++++|+|..+...+...|.+++.++++. +++.+|++.+++++++++++++
T Consensus 79 ~-~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~ 157 (368)
T d1v2da_ 79 E-SVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALL 157 (368)
T ss_dssp G-GEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEE
T ss_pred c-ceeeccchHHHHHHHhhccccccccccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhhccCceEEE
Confidence 8 899999999999999999999999999999999999999999999999988753 4578999999999999999999
Q ss_pred ecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEE
Q 013883 248 MNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI 327 (434)
Q Consensus 248 ~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~ 327 (434)
+++||||||.+++.+++++|+++|++||+++|+||+|..+.+.......... ..++.+++.|+||.++++|+|+||++
T Consensus 158 ~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sk~~~~~G~R~g~~~ 235 (368)
T d1v2da_ 158 LNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF--APERTFTVGSAGKRLEATGYRVGWIV 235 (368)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH--CTTTEEEEEEHHHHTTCGGGCCEEEE
T ss_pred EcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccc--cccccceeeccccccccccccccccc
Confidence 9999999999999999999999999999999999999987766544332222 35678899999999999999999999
Q ss_pred eChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecC
Q 013883 328 APPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHT 405 (434)
Q Consensus 328 ~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 405 (434)
+++++++.+.+.+.....+.+.+.|.++..+|... .++++++++.++++++.+.+.|++.|+++.+++|++|+|++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~g~~~~~~~l~ 315 (368)
T d1v2da_ 236 GPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELP 315 (368)
T ss_dssp CCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECT
T ss_pred ccccccchhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcCcEEecCCceeEEEEeCC
Confidence 99999999999888888999999999999888753 4578999999999999999999999999999999999999985
Q ss_pred CCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 406 PFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 406 ~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
. . +. .+|++++||.++||+.||
T Consensus 316 ~--~-~~----~~ll~~~gI~v~pg~~F~ 337 (368)
T d1v2da_ 316 G--W-DA----FRLVEEARVALIPASAFY 337 (368)
T ss_dssp T--C-CH----HHHHHHTCEECEEGGGGC
T ss_pred c--c-HH----HHHHHhCCEEEEechhhC
Confidence 3 2 22 245678899999999886
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-48 Score=379.55 Aligned_cols=320 Identities=20% Similarity=0.258 Sum_probs=272.4
Q ss_pred eeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc
Q 013883 111 AINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL 190 (434)
Q Consensus 111 ~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l 190 (434)
.|+|++|.||+++|+.+++++.+++.++.++|++..| +++|+++++++.+++|.+++++ +|++|+|+++++..++.++
T Consensus 1 ~~~~~~~~~df~~p~~i~eal~~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~-~i~it~G~~~~l~~~~~~l 78 (361)
T d1d2fa_ 1 LLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQ-TVVYGPSVIYMVSELIRQW 78 (361)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGG-GEEEESCHHHHHHHHHHHS
T ss_pred CcCcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcc-eEEEeCCHHHHHHHHhhhc
Confidence 4899999999999999999999999887788999988 7899999999999999999999 8999999999999999999
Q ss_pred cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC--CCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 191 INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP--PDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 191 ~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~--~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
++|||+|++++|+|++|..+++..|.+++.++.+. +++.+|++.+++.+.. +++++++++||||||.+++.+++++|
T Consensus 79 ~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i 158 (361)
T d1d2fa_ 79 SETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIM 158 (361)
T ss_dssp SCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHH
T ss_pred cccccccccccccccchhHHHHhhcceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhhh
Confidence 99999999999999999999999999999998864 3467999999998855 78999999999999999999999999
Q ss_pred HHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhH-HH-HHHHhhccc-
Q 013883 268 ASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT-WG-VRQAHSFLT- 344 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~-~~-l~~~~~~~~- 344 (434)
+++|+++|++||+||+|.++.|++........ ...++++++.|+||.++++|+|+||++.+.... .. +........
T Consensus 159 ~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~-~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~ 237 (361)
T d1d2fa_ 159 ADLCERHGVRVISDEIHMDMVWGEQPHIPWSN-VARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGL 237 (361)
T ss_dssp HHHHHHTTCEEEEECTTTTCBCSSSCCCCGGG-TCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCC
T ss_pred hhhhhhhheeeeeccccccccccccccccccc-ccccccccccccccccccccccceeeecchhHHHHHHhhhccccccc
Confidence 99999999999999999999987654332222 235789999999999999999999998764332 22 333333222
Q ss_pred cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC--CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHh
Q 013883 345 FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV--GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKE 422 (434)
Q Consensus 345 ~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 422 (434)
.+++...+.++...+....++.++++..++++++.+.+.+.+. ++.+.+++|+||+|+++.+.+. ++.+++.+|+++
T Consensus 238 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~~~-~~~~~~~~Ll~~ 316 (361)
T d1d2fa_ 238 SSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNI-DDNALQKALIEQ 316 (361)
T ss_dssp CSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGCC-CHHHHHHHHHHT
T ss_pred ccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhcccccccccCceeEEEEEccCCCC-CHHHHHHHHHHh
Confidence 3344455555555666667788899999999999988887663 6788899999999999866555 688999999999
Q ss_pred cCeEEECCCCCC
Q 013883 423 VGVVAIPTSVFY 434 (434)
Q Consensus 423 ~GV~v~pG~~F~ 434 (434)
+||.+.||+.|+
T Consensus 317 ~gv~v~pG~~F~ 328 (361)
T d1d2fa_ 317 EKVAIMPGYTYG 328 (361)
T ss_dssp TCEECEEGGGGC
T ss_pred CCEEEEeccccC
Confidence 999999999884
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=1.4e-47 Score=379.93 Aligned_cols=341 Identities=21% Similarity=0.323 Sum_probs=283.4
Q ss_pred HHhhhccccHHHHHHHHhhcCCeeEeCCCCCCCC--CcHHHHHHHHHHHHcC---CCCCCCCCCcHHHHHHHHHHHHhhc
Q 013883 89 KRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFD--GPDFVKDAAIQAIRDG---KNQYARGHGVPEFNSAIASRFKKDS 163 (434)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~--~~~~v~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~ 163 (434)
++....+.+.++++.+++.++++|||+.|.|+.. |.+.+.+++.+++.+. ...|++..|.++||+++++++.+.+
T Consensus 9 ~~~~~~~~s~ire~~~~~~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~ 88 (403)
T d1wsta1 9 EKAMLMKASEVRELLKLVETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRY 88 (403)
T ss_dssp HHHHHCCCHHHHHHHHHHTSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHhCCCCcEECCCCCCCccccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHh
Confidence 4445555666778888888899999999998754 4456777777776542 3679999999999999999999999
Q ss_pred CCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCC-CHH----HHHhh
Q 013883 164 GLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAI-PIE----ELKST 238 (434)
Q Consensus 164 g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~-d~~----~l~~~ 238 (434)
|.+++++ +|++|+|+++++..++.+++++||+|++++|+|+.|...+..+|++++.|+.++.+... +.. .....
T Consensus 89 g~~~~~~-~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 167 (403)
T d1wsta1 89 DIPMSKV-EIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQ 167 (403)
T ss_dssp CCCCTTC-EEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHT
T ss_pred CCCCChH-HeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHHhhccccceeEeecccCCccccccccchhhhhc
Confidence 9999998 89999999999999999999999999999999999999999999999999988532211 111 11112
Q ss_pred cccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcc
Q 013883 239 ISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSL 318 (434)
Q Consensus 239 i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 318 (434)
.++...++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++............+++++++||||.++
T Consensus 168 ~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~- 246 (403)
T d1wsta1 168 GKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILA- 246 (403)
T ss_dssp TCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTC-
T ss_pred cccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceec-
Confidence 2335567788999999999999999999999999999999999999999998755433333334689999999999997
Q ss_pred ccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhC---CCEeec
Q 013883 319 TGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAV---GFKVFP 393 (434)
Q Consensus 319 ~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~~ 393 (434)
+|+|+||+++++++++.+.........+.+...|.+.+.++... +++++++++.++++++.+.+.|.+. |+.+..
T Consensus 247 ~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 326 (403)
T d1wsta1 247 PGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTK 326 (403)
T ss_dssp GGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECC
T ss_pred CcccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeC
Confidence 99999999999999999988887778888999998888888775 5678889999999999999999873 788899
Q ss_pred CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 394 SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
|+||+|+|++++. +. +...+++.|++ +||.++||+.|+
T Consensus 327 p~gg~~~~~~~~~-~~-~~~~~~~~l~~-~gV~v~pg~~f~ 364 (403)
T d1wsta1 327 PEGGMFVRVTLPE-GI-DTKLMMERAVA-KGVAYVPGEAFF 364 (403)
T ss_dssp CSBSSEEEEECCT-TC-CTTTTHHHHHH-TTEECEEGGGGS
T ss_pred CCceeEEEEECCC-CC-CHHHHHHHHHH-CCEEEEechhhc
Confidence 9999999999854 33 45567777665 599999999885
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3e-48 Score=386.96 Aligned_cols=334 Identities=20% Similarity=0.292 Sum_probs=279.4
Q ss_pred ccccHHHHHHHHhhcCCeeEeCCCCCCCC--CcHHHHHHHHHHHHcC---CCCCCCCCCcHHHHHHHHHHHHhhcCCC-C
Q 013883 94 FKTTIFTQMSMLAIKHGAINLGQGFPNFD--GPDFVKDAAIQAIRDG---KNQYARGHGVPEFNSAIASRFKKDSGLE-V 167 (434)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~i~l~~g~p~~~--~~~~v~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~-~ 167 (434)
...+.++++.+++.++++|||+.|.|+.. |.+.+.+++++++++. ..+|++..|+++||+++++++.+.+|.. +
T Consensus 23 ~~~s~ir~~~~~~~~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~ 102 (420)
T d1vp4a_ 23 MKSSIIREILKFAADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGL 102 (420)
T ss_dssp CCCCCHHHHTTTTTSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSC
T ss_pred CCCcHHHHHHHHhCCCCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCC
Confidence 34455666666677889999999999765 4566777777777653 3689999999999999999999999986 6
Q ss_pred CCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc-------
Q 013883 168 DPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS------- 240 (434)
Q Consensus 168 ~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~------- 240 (434)
+++ +|++|+|+++++.+++.+++++||+|++++|+|+.|...++..|++++.+|.++ .++|++.++..+.
T Consensus 103 ~~~-~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 179 (420)
T d1vp4a_ 103 DED-NLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLED--DGMDLNVLERKLSEFDKNGK 179 (420)
T ss_dssp CGG-GEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET--TEECHHHHHHHHHHHHHTTC
T ss_pred CHH-HeEeccchhhhHHHHHHhhhccccccccccccccchhHHHHHHhhhcccccccc--cccccchhhhhhhhhHHHhh
Confidence 787 899999999999999999999999999999999999999999999999999884 4567777655432
Q ss_pred --cCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcc
Q 013883 241 --KNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSL 318 (434)
Q Consensus 241 --~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 318 (434)
+.++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++............+++++++|+||.++
T Consensus 180 ~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~- 258 (420)
T d1vp4a_ 180 IKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA- 258 (420)
T ss_dssp GGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-
T ss_pred ccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEeccccccc-
Confidence 12345567899999999999999999999999999999999999999998754332222234678999999999886
Q ss_pred ccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhC-----CCEe
Q 013883 319 TGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAV-----GFKV 391 (434)
Q Consensus 319 ~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~ 391 (434)
+|+|+||+++++++++++.+.......+.+...|.+++.++... .+++++.++.++++++.+.+.|++. |+++
T Consensus 259 ~G~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~ 338 (420)
T d1vp4a_ 259 PGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKW 338 (420)
T ss_dssp GGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEE
T ss_pred cccccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEE
Confidence 99999999999999999998888888899999999999888864 4677888888999998888888763 7899
Q ss_pred ecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 392 FPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
.+|+||||+|++++. +. ++.++++.| +++||.+.||+.|+
T Consensus 339 ~~p~gg~f~~~~~~~-~~-d~~~~~~~l-~~~gV~v~PG~~F~ 378 (420)
T d1vp4a_ 339 VKSEGGLFIWLTLPE-GF-DTWEMFEYA-KRKKVFYVPGRVFK 378 (420)
T ss_dssp CCCSBSSEEEEECCT-TC-CTTTTHHHH-HHHTEECEEGGGGC
T ss_pred ecCCceEEEEEECCC-CC-CHHHHHHHH-HHCCeEEEechhhC
Confidence 999999999999853 33 455677766 45699999999885
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=3.9e-47 Score=377.82 Aligned_cols=343 Identities=15% Similarity=0.103 Sum_probs=272.8
Q ss_pred CCCcchhhhccCCchHHHHHhhhccccHHHHHHHHhhcCCeeEeCCC-C--CCCC--CcHHHHHHHHHHHHc--CCCCCC
Q 013883 71 TNQSDTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQG-F--PNFD--GPDFVKDAAIQAIRD--GKNQYA 143 (434)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g-~--p~~~--~~~~v~~~~~~~~~~--~~~~Y~ 143 (434)
+-|.+++..+.++++++++++++++.+ ++|||++| + ++.. ..+.|+++.+....+ ..++|+
T Consensus 3 ~~~~~~~~~~~d~i~~~~~~~~~d~~~------------~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~ 70 (412)
T d1yaaa_ 3 TLFNNIELLPPDALFGIKQRYGQDQRA------------TKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYL 70 (412)
T ss_dssp TTTTTCCCCCCCTTHHHHHHHHTCCCS------------SCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCC
T ss_pred ChhhcCCcCCCChHHHHHHHHhcCCCC------------CcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCC
Confidence 456667777888999999999887653 78999999 3 3322 236677665444333 346899
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEE--cCChHHHHHHH--HHHccCCCCeEEEcCCCchhHHHHHHHcCCEEE
Q 013883 144 RGHGVPEFNSAIASRFKKDSGLEVDPEKEVTV--TSGCTEAIAAT--ILGLINPGDEVILFAPFYDSYEATLSMAGAKIK 219 (434)
Q Consensus 144 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~--t~G~~~ai~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~ 219 (434)
|..|.++||+++++++.+.++....++ .+++ +.|+..++..+ +..+.+|||+|++++|+|+.|...+...|++++
T Consensus 71 p~~G~~~lr~aia~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~ 149 (412)
T d1yaaa_ 71 GITGLPSLTSNAAKIIFGTQSDALQED-RVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTA 149 (412)
T ss_dssp CTTCCHHHHHHHHHHHHCTTCHHHHTT-CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEE
T ss_pred CCCCCHHHHHHHHHHHhcccCcccccc-ceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHcCCcee
Confidence 999999999999999998887665555 3333 34445544443 344578999999999999999999999999999
Q ss_pred EEEcCC-CCCCCCHHHHHhhcc---cCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCcc
Q 013883 220 CITLRP-PDFAIPIEELKSTIS---KNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHIS 295 (434)
Q Consensus 220 ~v~~~~-~~~~~d~~~l~~~i~---~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~ 295 (434)
.+|+.. .++.+|.+.+++.+. ++++++++++||||||.+++.+++++|+++|++++++||+||+|.+|.|++....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~ 229 (412)
T d1yaaa_ 150 TYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKD 229 (412)
T ss_dssp EEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHH
T ss_pred cccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccc
Confidence 999864 457788888887775 3567889999999999999999999999999999999999999999999863221
Q ss_pred ------ccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHH-----------HHHHhhccccCCchHHHHHHHHH
Q 013883 296 ------IASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG-----------VRQAHSFLTFATSTPMQWAATAA 358 (434)
Q Consensus 296 ------~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~-----------l~~~~~~~~~~~~~~~q~a~~~~ 358 (434)
........++++++.|+||.++++|+|+||++++++++.. +....+....+++.+.|.++..+
T Consensus 230 ~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 309 (412)
T d1yaaa_ 230 AYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKL 309 (412)
T ss_dssp THHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred hhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 1222345688999999999999999999999998654332 22334456788999999999999
Q ss_pred HhCC------hHHHHHHHHHHHHHHHHHHHHhhhCC----CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 359 LRAP------ETYYEELKRDYSAKKAILVEGLNAVG----FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 359 L~~~------~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
+.+. .++++.++++|+++|+.+.+.|++.| |.+++++||||+|+++ +.+++++|++++||+++
T Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~l-------s~e~~~~L~~e~~V~~~ 382 (412)
T d1yaaa_ 310 LETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL-------TPQMVKRLEETHAVYLV 382 (412)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC-------CHHHHHHHHHHHCEECC
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEecCc-------CHHHHHHHHHhCCEEEC
Confidence 9984 35678889999999999999998875 6678899999999876 34789999999999999
Q ss_pred CCCCC
Q 013883 429 PTSVF 433 (434)
Q Consensus 429 pG~~F 433 (434)
||+.|
T Consensus 383 ~g~Ri 387 (412)
T d1yaaa_ 383 ASGRA 387 (412)
T ss_dssp TTSEE
T ss_pred CCCEE
Confidence 99764
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=9.8e-47 Score=377.16 Aligned_cols=322 Identities=23% Similarity=0.391 Sum_probs=264.4
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHH------------cCCCCCCCCCCcHHHHHHHHHHHHhhcC--CCCCCCCcEEE
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIR------------DGKNQYARGHGVPEFNSAIASRFKKDSG--LEVDPEKEVTV 175 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~~i~~ 175 (434)
++|+|+++++.+. .+.+.+.+.+... .....|++..|.++||+++|+++++.+| +.++++ +|++
T Consensus 37 G~i~l~~~en~l~-~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe-~I~i 114 (431)
T d1m7ya_ 37 GIIQMGLAENQLC-FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN-HLVL 114 (431)
T ss_dssp SBEECSSCCCCSC-HHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG-GEEE
T ss_pred cEEEeeccccccc-HHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcc-eEEE
Confidence 5899999988764 3344444433100 0123699999999999999999999887 456788 8999
Q ss_pred cCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHH-cCCEEEEEEcCC-CCCCCCHHHHHhhccc------CCcEEE
Q 013883 176 TSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSM-AGAKIKCITLRP-PDFAIPIEELKSTISK------NTRAIL 247 (434)
Q Consensus 176 t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~i~ 247 (434)
|+|+++++..++.++++|||+|++++|+|+.+...+.. .|++++.+++++ .++.+|++.+++.+.+ ++++++
T Consensus 115 t~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~ 194 (431)
T d1m7ya_ 115 TAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVL 194 (431)
T ss_dssp EEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEE
Confidence 99999999999999999999999999999999888874 689999999986 3588999999887753 678899
Q ss_pred ecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCC-ccccCC---------CCCCCceEEEccCChhhc
Q 013883 248 MNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH-ISIASL---------PGMYERTVTMNSLGKTFS 317 (434)
Q Consensus 248 ~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~-~~~~~~---------~~~~~~~i~i~S~SK~~g 317 (434)
+++||||||.+++.+++++|+++|++||++||+||+|.++.|++.. .++..+ ....+++++++||||.||
T Consensus 195 ~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~ 274 (431)
T d1m7ya_ 195 VTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLG 274 (431)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSC
T ss_pred ecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCccccc
Confidence 9999999999999999999999999999999999999999987642 222221 223568999999999999
Q ss_pred cccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecC
Q 013883 318 LTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP---ETYYEELKRDYSAKKAILVEGLNAVGFKVFPS 394 (434)
Q Consensus 318 ~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 394 (434)
++|+|+||++++++++........ .....+...+.++.+.+.+. ++++++++.+++++++.+.+.|++.|+++.++
T Consensus 275 ~~G~RiG~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~~~p 353 (431)
T d1m7ya_ 275 LPGFRVGAIYSNDDMVVAAATKMS-SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNG 353 (431)
T ss_dssp CGGGCEEEEEESCHHHHHHHHHHG-GGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCC
T ss_pred CCCCccceeccchhhhHHHHHHHh-ccccccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcCCcEEecC
Confidence 999999999999888765554433 34556667777777777663 46788899999999999999999999999999
Q ss_pred CeeEEEeeecCCCC----CCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 395 SGTYFVVVDHTPFG----HETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 395 ~~~~~~~~~~~~~~----~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
+||||+|++++... ..++.+++++|++++||.+.||+.|+
T Consensus 354 ~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~ 397 (431)
T d1m7ya_ 354 NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCH 397 (431)
T ss_dssp CSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGT
T ss_pred CceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccC
Confidence 99999999986432 12456799999999999999999885
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.1e-48 Score=381.05 Aligned_cols=339 Identities=17% Similarity=0.172 Sum_probs=273.3
Q ss_pred chhhhccCCchHHHHHhhhccccHHHHHHHHhhcCCeeEeCCCC---CCC--CCcHHHHHHHHHHHHc--CCCCCCCCCC
Q 013883 75 DTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGF---PNF--DGPDFVKDAAIQAIRD--GKNQYARGHG 147 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~---p~~--~~~~~v~~~~~~~~~~--~~~~Y~~~~G 147 (434)
+++..+.++++++.+++++.+.+ ++|||++|. ++. +..+.++++......+ ..+.|+|..|
T Consensus 4 ~~~~~~~dpi~~~~~~~~~d~~~------------~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G 71 (397)
T d3tata_ 4 KVDAYAGDPILTLMERFKEDPRS------------DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEG 71 (397)
T ss_dssp CCCCCCCCTTTTHHHHHHHSCCS------------SCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTC
T ss_pred cCCCCCCCcHHHHHHHHhcCCCC------------CcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCccc
Confidence 44555668888998888776643 789999993 322 2246677665544333 3467999999
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH----HHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEc
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA----IAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITL 223 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a----i~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~ 223 (434)
+++||+++++++.+.++..++++ +|+++.|++++ +.+++..+++|||+|++++|+|++|..+++.+|++++.+|+
T Consensus 72 ~~~lR~aia~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~ 150 (397)
T d3tata_ 72 LNCYRHAIAPLLFGADHPVLKQQ-RVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPW 150 (397)
T ss_dssp CHHHHHHHHHHHTCSSCHHHHTT-CEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCC
T ss_pred CHHHHHHHHHHHhhccCCcCCcC-cEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcCCEEEEEec
Confidence 99999999999999999888887 78887766653 55666677899999999999999999999999999999999
Q ss_pred CCC-CCCCCHHHHHhhcc---cCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCc--ccc
Q 013883 224 RPP-DFAIPIEELKSTIS---KNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHI--SIA 297 (434)
Q Consensus 224 ~~~-~~~~d~~~l~~~i~---~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~--~~~ 297 (434)
+.+ ++.+|++.+.+.+. ++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|+++.. .+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~ 230 (397)
T d3tata_ 151 YDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIR 230 (397)
T ss_dssp CCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHH
T ss_pred chhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhh
Confidence 763 46788888777654 477889999999999999999999999999999999999999999999875322 233
Q ss_pred CCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHH-------HhhccccCCchHHHHHHHHHHhCC------hH
Q 013883 298 SLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQ-------AHSFLTFATSTPMQWAATAALRAP------ET 364 (434)
Q Consensus 298 ~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~-------~~~~~~~~~~~~~q~a~~~~L~~~------~~ 364 (434)
......++++.+.|+||.++++|+|+||++++...++.... .......+++...|.++...+.+. .+
T Consensus 231 ~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 310 (397)
T d3tata_ 231 AIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLA 310 (397)
T ss_dssp HHHTTTCCCEECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHH
T ss_pred hhhhcCCceEEEecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHH
Confidence 33345678999999999999999999999987655543332 334456778889999999988874 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCC----CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 365 YYEELKRDYSAKKAILVEGLNAVG----FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+++.++++++++++.+.+.|++.+ |.+.++++|||+|+.+ +.+++++|++++||++.||..|
T Consensus 311 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l-------s~e~~~~L~~e~~V~l~~g~Ri 376 (397)
T d3tata_ 311 EVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGL-------SAAQVDRLREEFGVYLIASGRM 376 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCC-------CHHHHHHHTTTTCEECCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcCCCceEEecCc-------CHHHHHHHHHhCCEEeCCCCEE
Confidence 566778889999999999998763 7788999999999876 3478999999999999999765
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=2.8e-46 Score=373.56 Aligned_cols=321 Identities=23% Similarity=0.417 Sum_probs=260.5
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHc-----------CCCCCCCCCCcHHHHHHHHHHHHhhcCC--CCCCCCcEEEc
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRD-----------GKNQYARGHGVPEFNSAIASRFKKDSGL--EVDPEKEVTVT 176 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~-----------~~~~Y~~~~G~~~lr~~ia~~l~~~~g~--~~~~~~~i~~t 176 (434)
++|+|+++++.+. .+.+.+.+.+.... ....|++..|.++||+++|+++++.+|. .++++ +|++|
T Consensus 37 G~i~l~~aen~l~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e-~Ivit 114 (428)
T d1iaya_ 37 GVIQMGLAENQLC-LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE-RVVMA 114 (428)
T ss_dssp SBEECSSCCCCSS-HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTT-SCEEE
T ss_pred ceEEeecccCccc-hHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChh-hEEEc
Confidence 6899999987543 34444444332111 1246999999999999999999999875 45788 89999
Q ss_pred CChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHH-cCCEEEEEEcCC-CCCCCCHHHHHhhc------ccCCcEEEe
Q 013883 177 SGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSM-AGAKIKCITLRP-PDFAIPIEELKSTI------SKNTRAILM 248 (434)
Q Consensus 177 ~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~G~~~~~v~~~~-~~~~~d~~~l~~~i------~~~~~~i~~ 248 (434)
+|+++++..++.+++++||+|++++|+|+.+...+.. .|++++.+++++ .++.+|++.++.++ ..+++++++
T Consensus 115 ~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l 194 (428)
T d1iaya_ 115 GGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLIL 194 (428)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEeecccccccccccccccchhhhhhccCCCceEEEE
Confidence 9999999999999999999999999999999887764 589999999876 46899999887654 336788999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCC-ccccCC-------CCCCCceEEEccCChhhcccc
Q 013883 249 NTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH-ISIASL-------PGMYERTVTMNSLGKTFSLTG 320 (434)
Q Consensus 249 ~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~-~~~~~~-------~~~~~~~i~i~S~SK~~g~~G 320 (434)
++||||||.+++.+++++|+++|++||++||+||+|.++.|++.. .++..+ ....+++++++||||.|+++|
T Consensus 195 ~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G 274 (428)
T d1iaya_ 195 TNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG 274 (428)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG
T ss_pred ccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCC
Confidence 999999999999999999999999999999999999999987643 233222 123578999999999999999
Q ss_pred ceeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCe
Q 013883 321 WKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAP---ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSG 396 (434)
Q Consensus 321 ~R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 396 (434)
+|+||++++ +.+.+.++.... ....+.+.|.++.+.+... ++++++.++.++++++.+.+.|+..|+++.+++|
T Consensus 275 lRiG~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~gi~~~~p~g 352 (428)
T d1iaya_ 275 FRVGIIYSFNDDVVNCARKMSS--FGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNA 352 (428)
T ss_dssp GCEEEEEESCHHHHHHHHHHHT--TSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSS
T ss_pred cccccccccccchhhhhhhhhc--ccccccccccchhhhhhhhccccccccccccccchhHHHHHHHHHhCCCEEecCCc
Confidence 999999985 455555555443 3455677777777766653 4577888899999999999999999999999999
Q ss_pred eEEEeeecCCCC----CCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 397 TYFVVVDHTPFG----HETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 397 ~~~~~~~~~~~~----~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
|||+|+++.+.. .+++.+++++|++++||.++||+.|+
T Consensus 353 g~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~ 394 (428)
T d1iaya_ 353 GLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFE 394 (428)
T ss_dssp SSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGT
T ss_pred ceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcC
Confidence 999999986432 22355789999999999999999885
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=8.5e-47 Score=375.50 Aligned_cols=343 Identities=16% Similarity=0.137 Sum_probs=268.4
Q ss_pred CCCcchhhhccCCchHHHHHhhhccccHHHHHHHHhhcCCeeEeCCC-CCCC----CCcHHHHHHHHHHHHc--CCCCCC
Q 013883 71 TNQSDTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQG-FPNF----DGPDFVKDAAIQAIRD--GKNQYA 143 (434)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g-~p~~----~~~~~v~~~~~~~~~~--~~~~Y~ 143 (434)
+.|++.++.+.++++.+++++++.+.+ ++|||++| +++. +..+.|+++......+ ..++|+
T Consensus 4 s~~~~~~~~~~~~i~~l~~~~~~d~~~------------~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~ 71 (412)
T d1ajsa_ 4 SVFAEVPQAQPVLVFKLIADFREDPDP------------RKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYL 71 (412)
T ss_dssp CTTTTCCCCCCCHHHHHHHHHHTCCCT------------TCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCC
T ss_pred ChhhhCCcCCCChHHHHHHHHhcCCCC------------CcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCC
Confidence 467777888888889999999876543 78999999 4432 2345666665544443 246799
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCCCCC-cEEEcCChHHHHHHH-------HHHccCCCCeEEEcCCCchhHHHHHHHcC
Q 013883 144 RGHGVPEFNSAIASRFKKDSGLEVDPEK-EVTVTSGCTEAIAAT-------ILGLINPGDEVILFAPFYDSYEATLSMAG 215 (434)
Q Consensus 144 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~-~i~~t~G~~~ai~~~-------~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G 215 (434)
|..|+++||+++++++.+.++..++.++ .++.+.|++.++..+ +.++++|||+|++++|+|++|..+++..|
T Consensus 72 p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G 151 (412)
T d1ajsa_ 72 PILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAG 151 (412)
T ss_dssp CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHcC
Confidence 9999999999999999988887776663 233445554444433 33347999999999999999999999999
Q ss_pred CEEEEEEc-C-CCCCCCCHHHHHhhc---ccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccC
Q 013883 216 AKIKCITL-R-PPDFAIPIEELKSTI---SKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE 290 (434)
Q Consensus 216 ~~~~~v~~-~-~~~~~~d~~~l~~~i---~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~ 290 (434)
++.+.++. . +..+..|++.+++.+ .++++++++++||||||.+++.+++++|+++|++||++||+||+|.++.|+
T Consensus 152 ~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~ 231 (412)
T d1ajsa_ 152 FKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASG 231 (412)
T ss_dssp CSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTS
T ss_pred CeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcC
Confidence 98665543 3 245678888877764 457889999999999999999999999999999999999999999999988
Q ss_pred CCCc---cccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHH-------HhhccccCCchHHHHHHHHHHh
Q 013883 291 MDHI---SIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQ-------AHSFLTFATSTPMQWAATAALR 360 (434)
Q Consensus 291 ~~~~---~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~-------~~~~~~~~~~~~~q~a~~~~L~ 360 (434)
+... .........++++++.|+||.++++|+|+||++++...+..+.. .......+++...|.++..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (412)
T d1ajsa_ 232 NLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLS 311 (412)
T ss_dssp CHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHH
T ss_pred CcccchhhhhhhhhhcccccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhc
Confidence 6322 22222334578899999999999999999999998766554433 3334566788899999998888
Q ss_pred CC------hHHHHHHHHHHHHHHHHHHHHhhhCC----CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 361 AP------ETYYEELKRDYSAKKAILVEGLNAVG----FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 361 ~~------~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
+. .++++.++++++++|+.+.+.|++++ |.++++++|||.|+++ +.+++++|++++||+++||
T Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~l-------s~~~v~~L~~e~gV~~vpg 384 (412)
T d1ajsa_ 312 DPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL-------NPKQVEYLINQKHIYLLPS 384 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCC-------CHHHHHHHHHTTCEECCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEecCC-------CHHHHHHHHHhCCEEEeCC
Confidence 64 34577789999999999999999875 5667889999999875 3477889999999999999
Q ss_pred CC
Q 013883 431 SV 432 (434)
Q Consensus 431 ~~ 432 (434)
+.
T Consensus 385 ~R 386 (412)
T d1ajsa_ 385 GR 386 (412)
T ss_dssp SE
T ss_pred Ce
Confidence 74
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-46 Score=372.27 Aligned_cols=340 Identities=17% Similarity=0.211 Sum_probs=257.3
Q ss_pred chhhhccCCchHHHHHhhhccccHHHHHHHHhhcCCeeEeCCC-C--CC--CCCcHHHHHHHHHHHHcC-CCCCCCCCCc
Q 013883 75 DTIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQG-F--PN--FDGPDFVKDAAIQAIRDG-KNQYARGHGV 148 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g-~--p~--~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~ 148 (434)
++++++.++++.+++++++.+. +++|||++| + ++ .+.++.|+++..++++++ .++|+|..|+
T Consensus 4 ~~~~~p~d~i~~~~~~~~~d~~------------~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~ 71 (396)
T d2q7wa1 4 NITAAPADPILGLADLFRADER------------PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGI 71 (396)
T ss_dssp TCCCCCC-----------------------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCC
T ss_pred ccccCCCChHHHHHHHHhccCC------------CCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCC
Confidence 3445556677777777765443 378999999 2 32 334578888888877765 4579999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCC-cEEEcCChHHHHHHHH--HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC
Q 013883 149 PEFNSAIASRFKKDSGLEVDPEK-EVTVTSGCTEAIAATI--LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP 225 (434)
Q Consensus 149 ~~lr~~ia~~l~~~~g~~~~~~~-~i~~t~G~~~ai~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~ 225 (434)
++||+++++++.++++....++. .++++.|+..++.+++ ...+++||.|++++|+|++|..++..+|++++.+++..
T Consensus 72 ~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~ 151 (396)
T d2q7wa1 72 PEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYD 151 (396)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEE
T ss_pred HHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcCCeeEeccccc
Confidence 99999999999988887666652 2345666666655444 44578999999999999999999999999999999875
Q ss_pred -CCCCCCHHHHHhhc---ccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCc--cccCC
Q 013883 226 -PDFAIPIEELKSTI---SKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHI--SIASL 299 (434)
Q Consensus 226 -~~~~~d~~~l~~~i---~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~--~~~~~ 299 (434)
+++..+++.+++.. .++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|+++.. .....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~ 231 (396)
T d2q7wa1 152 AENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAF 231 (396)
T ss_dssp TTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHH
T ss_pred ccccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhh
Confidence 34556666666544 4478888999999999999999999999999999999999999999999876422 22222
Q ss_pred CCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHh-------hccccCCchHHHHHHHHHHhCC------hHHH
Q 013883 300 PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAH-------SFLTFATSTPMQWAATAALRAP------ETYY 366 (434)
Q Consensus 300 ~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~-------~~~~~~~~~~~q~a~~~~L~~~------~~~~ 366 (434)
....++++++.|+||.++++|+|+||++++...++.+.... .....+++...|.++..++.+. ++++
T Consensus 232 ~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 311 (396)
T d2q7wa1 232 AAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQEL 311 (396)
T ss_dssp HHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHH
Confidence 33457889999999999999999999999987776655433 3345678888898888888764 3567
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC----CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 367 EELKRDYSAKKAILVEGLNAVG----FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
++++++++++|+.+.+.|+++| |.++++++|||.|+++ +.+++++|++++||+++||+.|
T Consensus 312 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l-------~~e~~~~L~~e~gV~~~~g~Ri 375 (396)
T d2q7wa1 312 TDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGL-------TKEQVLRLREEFGVYAVASGRV 375 (396)
T ss_dssp HHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCC-------CHHHHHHHHHHHCEECCTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcceecCCCeEEEeeCC-------CHHHHHHHHHhCCEEECCCCEE
Confidence 7888999999999999999986 5667888999999876 3478999999999999999743
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=1.1e-45 Score=365.22 Aligned_cols=338 Identities=16% Similarity=0.160 Sum_probs=265.8
Q ss_pred hhhhccCCchHHHHHhhhccccHHHHHHHHhhcCCeeEeCCCC---CC--CCCcHHHHHHHHHHHHcC-CCCCCCCCCcH
Q 013883 76 TIQKTNLQPQQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGF---PN--FDGPDFVKDAAIQAIRDG-KNQYARGHGVP 149 (434)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~---p~--~~~~~~v~~~~~~~~~~~-~~~Y~~~~G~~ 149 (434)
...++.++++.+++++++++. +++|||++|. ++ .+.++.|++++++.+++. .++|+|..|++
T Consensus 5 ~~~~~~d~i~~l~~~~~~d~~------------~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~ 72 (394)
T d2ay1a_ 5 LKPQAPDKILALMGEFRADPR------------QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEP 72 (394)
T ss_dssp CCCCCCCSHHHHHHHHHHCCC------------TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCH
T ss_pred CCCCCCChHHHHHHHHhCCCC------------CCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCH
Confidence 334455777888888876553 4789999993 22 334578888888887664 45799999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCC-hHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CC
Q 013883 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSG-CTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PD 227 (434)
Q Consensus 150 ~lr~~ia~~l~~~~g~~~~~~~~i~~t~G-~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~ 227 (434)
+||+++++++.+..+.....+ .+++++| +..++.+.+..+.++||+|++++|+|++|..+++.+|++++.+++.. .+
T Consensus 73 ~lr~aia~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~ 151 (394)
T d2ay1a_ 73 EFQKAMGELILGDGLKSETTA-TLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAET 151 (394)
T ss_dssp HHHHHHHHHHHGGGCCGGGEE-EEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTT
T ss_pred HHHHHHHHHHhcccccccccc-ceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHcCCEEEEecccchhc
Confidence 999999999998877655554 3444433 34456666777889999999999999999999999999999999865 34
Q ss_pred CCCCHHHHHhhc---ccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCcc-cc-CCCCC
Q 013883 228 FAIPIEELKSTI---SKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHIS-IA-SLPGM 302 (434)
Q Consensus 228 ~~~d~~~l~~~i---~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~-~~-~~~~~ 302 (434)
+..+.+.+++.. .++++++++++||||||.+++.+++++|+++|++|+++||+||+|.+|.|++.... +. .....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~ 231 (394)
T d2ay1a_ 152 RGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASR 231 (394)
T ss_dssp TEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhh
Confidence 556666665544 44677888899999999999999999999999999999999999999998764321 11 11122
Q ss_pred CCceEEEccCChhhccccceeeeEEeChhhHHHHHHH-------hhccccCCchHHHHHHHHHHhCC------hHHHHHH
Q 013883 303 YERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA-------HSFLTFATSTPMQWAATAALRAP------ETYYEEL 369 (434)
Q Consensus 303 ~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~L~~~------~~~~~~~ 369 (434)
..+++.+.|+||.++++|+|+||++++...++...+. ......+++...|.++...+.+. .++++.+
T Consensus 232 ~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 311 (394)
T d2ay1a_ 232 IPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAV 311 (394)
T ss_dssp CSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4568899999999999999999999987776654433 23345677888888888888764 3566778
Q ss_pred HHHHHHHHHHHHHHhhhCC----CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 370 KRDYSAKKAILVEGLNAVG----FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+++++++|+.+.+.|+++| |.++++++|||+|+++ +.+++++|++++||+++||..|
T Consensus 312 ~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l-------s~~~~~~L~~~~~V~~~~g~Ri 372 (394)
T d2ay1a_ 312 RSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGA-------TPEQVKRIKEEFGIYMVGDSRI 372 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCC-------CHHHHHHHHHHHCEECCTTCEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCceeeECCCceeEEecCc-------CHHHHHHHHHhCCEEecCCCEE
Confidence 8999999999999998863 6778899999999876 3578999999999999999754
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.8e-41 Score=330.16 Aligned_cols=302 Identities=17% Similarity=0.284 Sum_probs=249.6
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
++|||+.|.+.+++|+.+++++.+++.+ ...|++. |..+||++++++++ ++++ +|++++|+++++.+++..
T Consensus 23 ~~idls~~~np~~~p~~~~~a~~~~~~~-~~~Yp~~-~~~~Lr~aia~~~~------v~~~-~I~~~~g~~~~~~~~~~~ 93 (355)
T d1lc5a_ 23 QLLDFSANINPLGMPVSVKRALIDNLDC-IERYPDA-DYFHLHQALARHHQ------VPAS-WILAGNGETESIFTVASG 93 (355)
T ss_dssp GSEECSSCCCTTCCCHHHHHHHHHTGGG-GGSCCCT-TCHHHHHHHHHHHT------SCGG-GEEEESSHHHHHHHHHHH
T ss_pred heEEccCCCCCCCCCHHHHHHHHHHHHH-hccCCCC-ChHHHHHHHHHHhC------CCHH-HEEecccHHHHHHHHHhh
Confidence 6899999988888999999998887654 4678554 66899999999986 6777 899999999999987776
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCC-CCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPD-FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~-~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
+. |+.+++..|.|..|.......+++++.+|++.++ +.++ +.+++.+.+++++|++++||||||.+++.+++++|+
T Consensus 94 ~~--~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e~l~~i~ 170 (355)
T d1lc5a_ 94 LK--PRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIA 170 (355)
T ss_dssp HC--CSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred hc--cccccccCCccceeccccccccccceeeeeeccCCccce-eeeeeccccccceeeeecccCcccccchhhhhhhhh
Confidence 53 4566777899999999999999999999997644 5555 667778888999999999999999999999999999
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhH-HHHHHHhhccccCC
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT-WGVRQAHSFLTFAT 347 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~-~~l~~~~~~~~~~~ 347 (434)
++|++|++++|+||+|.+|.+.+... .......++++++.||||.+|++|+|+||++++.+.+ ..+++.+ ..++.
T Consensus 171 ~~a~~~~~~li~De~y~~~~~~~~~~--~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~--~~~~~ 246 (355)
T d1lc5a_ 171 DRCKSLNINLILDEAFIDFIPHETGF--IPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQ--MPWSV 246 (355)
T ss_dssp HHHHHHTCEEEEECTTGGGSTTCCCS--GGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHS--CTTCS
T ss_pred hhccccccccccccceeeeeeecccc--cccccccccceeecccccccccccccccceeccchhhhHHHHhhc--CCccc
Confidence 99999999999999999987665432 2233456899999999999999999999999986654 4454432 45788
Q ss_pred chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 348 STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 348 ~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
+.++|.++..+|++ .+++++.++.++++++.+.+.|.++ |+.+. +.+++|+|+++.. ++.+++++|++ +||.
T Consensus 247 ~~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-p~~~~f~~~~~~~----~~~~~~~~L~~-~gv~ 319 (355)
T d1lc5a_ 247 NALAALAGEVALQD-SAWQQATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCER----EDIDLQRRLLT-QRIL 319 (355)
T ss_dssp CHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEESC----TTCCHHHHHHT-TTEE
T ss_pred cccccccccccccc-cchhHHHHHHHHHHHHHHHHHHhhcCCcEEC-CCCCEEEEEECCC----CHHHHHHHHHH-CCcE
Confidence 89999999999987 5678888999999999999999997 66654 4566788888753 45578888865 5999
Q ss_pred EECCCCCC
Q 013883 427 AIPTSVFY 434 (434)
Q Consensus 427 v~pG~~F~ 434 (434)
|+||+.|+
T Consensus 320 vr~~~~f~ 327 (355)
T d1lc5a_ 320 IRSCANYP 327 (355)
T ss_dssp CEECTTST
T ss_pred EEeCccCC
Confidence 99998874
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.7e-40 Score=320.65 Aligned_cols=294 Identities=23% Similarity=0.294 Sum_probs=243.4
Q ss_pred cCCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHH
Q 013883 108 KHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATI 187 (434)
Q Consensus 108 ~~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~ 187 (434)
+.++|.|+.|++.+++|+.+.+++.+++..+...|.|..|.++||+++++++++. + ++++ +|++|+|+++++.+++
T Consensus 18 ~~d~~~l~~~enp~~~p~~i~~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~-~--v~~d-~I~it~G~~~~l~~l~ 93 (334)
T d2f8ja1 18 KRDKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTD-F--LSKN-NVSVGNGADEIIYVMM 93 (334)
T ss_dssp CCCSEECSSCCCSSCCCHHHHHHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCS-S--CCGG-GEEEEEHHHHHHHHHH
T ss_pred CCCceEEECCCCCCCCCHHHHHHHHHHhhcchhcCCCCCCcHHHHHHHHHHhccc-C--CCcc-eEEecCcchhHHHHHh
Confidence 4589999999988999999999998888766555557789999999999999754 3 5677 8999999999998776
Q ss_pred HHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHH
Q 013883 188 LGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVI 267 (434)
Q Consensus 188 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i 267 (434)
+ +||+|++++|+|..|...+..+|++++.+|++++... + ++..++++++++++||||||.+++.+++.++
T Consensus 94 ~----~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~-~-----~~~~~~~~~l~l~nP~NPtG~~~s~~~l~~~ 163 (334)
T d2f8ja1 94 L----MFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRI-P-----EVNVGEGDVVFIPNPNNPTGHVFEREEIERI 163 (334)
T ss_dssp H----HSSEEEECSSCCHHHHHHHHHHTCCEEECCCCTTSCC-C-----CCCCCTTEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred h----hccccccccccccccccchhccCCccccccccccccc-c-----ccccccceEEEecccccccceeecHHHhhcc
Confidence 5 4699999999999999999999999999999863322 2 2344678999999999999999998876553
Q ss_pred HHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCC
Q 013883 268 ASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT 347 (434)
Q Consensus 268 ~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~ 347 (434)
.++++++|+||+|.++.+..... .....+++++++||||.++++|+|+||++++++++.+++..+. .++.
T Consensus 164 ----~~~~~~ii~Dd~~~~~~~~~~~~----~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~~~~~--~~~~ 233 (334)
T d2f8ja1 164 ----LKTGAFVALDEAYYEFHGESYVD----FLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRL--PFNV 233 (334)
T ss_dssp ----HTTTCEEEEECTTGGGTCCCCGG----GGGTCSSEEEEEESTTTSSCTTTCEEEEEECHHHHHHHHHHSC--TTCS
T ss_pred ----ccceeEEeecccchhhccccccc----ccccCceEEEEecCccccchhhhhhhhcccchHHHHHHHHhhc--cccc
Confidence 56899999999998765432221 1224679999999999999999999999999999999988764 5678
Q ss_pred chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEE
Q 013883 348 STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVA 427 (434)
Q Consensus 348 ~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v 427 (434)
+.+.|.++..++.+ .+++++.++.++++|+.+.+.|+++|+++.+++|+ |+|+.+.. .+..++++.|++ +||.|
T Consensus 234 s~~~~~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~g~-f~~~~~~~---~~~~~~~~~L~~-~GI~v 307 (334)
T d2f8ja1 234 SYVSQMFAKVALDH-REIFEERTKFIVEERERMKSALREMGYRITDSRGN-FVFVFMEK---EEKERLLEHLRT-KNVAV 307 (334)
T ss_dssp CHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCSS-EEEEECCH---HHHHHHHHHHHH-TTEEC
T ss_pred chhhhhhccccccc-ccchhhHHHHHHHHHHHHHHHHHHCCCeECCCCce-EEEEECCC---CCHHHHHHHHHH-CCCEE
Confidence 88999999888886 67888999999999999999999999999999888 56776533 246778888865 59999
Q ss_pred ECCC
Q 013883 428 IPTS 431 (434)
Q Consensus 428 ~pG~ 431 (434)
+++.
T Consensus 308 r~~~ 311 (334)
T d2f8ja1 308 RSFR 311 (334)
T ss_dssp EEET
T ss_pred CCCC
Confidence 8754
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.5e-40 Score=319.63 Aligned_cols=296 Identities=18% Similarity=0.297 Sum_probs=242.5
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
+.|.|+.++..+++++.+.+ +..++|++.. ..+||++++++++ ++++ +|++|+|+++++..++++
T Consensus 28 ~~i~L~~ne~p~~~~~~~~~-------~~l~rYPd~~-~~~Lr~~ia~~~g------v~pe-~I~it~Gs~eai~~~~~~ 92 (354)
T d1fg7a_ 28 GDVWLNANEYPTAVEFQLTQ-------QTLNRYPECQ-PKAVIENYAQYAG------VKPE-QVLVSRGADEGIELLIRA 92 (354)
T ss_dssp CSEECSSCCCSSCCCCCCCC-------CCTTSCCCSS-CHHHHHHHHHHHT------SCGG-GEEEESHHHHHHHHHHHH
T ss_pred CCEEeeCCCCCCCCCHHHHH-------HHHhcCCCCc-HHHHHHHHHHHhC------CChH-HeeeccCchHHHHHHHHH
Confidence 57899988655555443322 2356897764 4799999999986 7888 999999999999999999
Q ss_pred ccCCCC-eEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 190 LINPGD-EVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 190 l~~~gd-~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
+++||| .|+++.|+|..|...++..|.+++.++.++ ++++|++.++..+. ++++|++++||||||.+++.++++.+.
T Consensus 93 ~~~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~~~-~~~~d~~~l~~~~~-~~~~v~~~~pnNPtG~~~~~~~~~~~~ 170 (354)
T d1fg7a_ 93 FCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLD-NWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLL 170 (354)
T ss_dssp HCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCT-TSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred hhccccccccccccccccchhhhhccCceeecccccc-ccccchhhhhhccc-ccceeeccCCCccceeEeeeccccccc
Confidence 999998 588899999999999999999999988874 79999999998874 789999999999999999999999888
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCc
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATS 348 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~ 348 (434)
+.++ ++.++|+||+|.+|.++.... ......+++++++||||.||++|+|+||+++++++++.+.+... .++.+
T Consensus 171 ~~~~-~~~~~iidd~~~~f~~~~~~~---~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~~~~--~~~~~ 244 (354)
T d1fg7a_ 171 ELTR-GKAIVVADEAYIEFCPQASLA---GWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIA--PYPLS 244 (354)
T ss_dssp HHHT-TTCEEEEECTTGGGSGGGCSG---GGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSC--SSCSC
T ss_pred cccc-ccccccccccchhhccccccc---hhhcccccceEEeCCccccCCCccccccccccchhhhhhhhhcC--ccchh
Confidence 8665 688889999998887553322 23345789999999999999999999999999999999877654 56677
Q ss_pred hHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCC-EeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 349 TPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGF-KVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 349 ~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
.+.|.++..++.+. .++......++.++|+.+.+.|.+++. ....+.+++|+|+++. ++.+++++|+++ ||+
T Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~-----~~~~~~~~L~~~-gIl 318 (354)
T d1fg7a_ 245 TPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK-----ASSAVFKSLWDQ-GII 318 (354)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET-----THHHHHHHHHHT-TEE
T ss_pred hHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEEeCC-----CHHHHHHHHHHC-CcE
Confidence 77877777766543 344566677888999999999999864 4556677788999873 477888888765 999
Q ss_pred EECCCCCC
Q 013883 427 AIPTSVFY 434 (434)
Q Consensus 427 v~pG~~F~ 434 (434)
|+||+.|+
T Consensus 319 vr~~~~~~ 326 (354)
T d1fg7a_ 319 LRDQNKQP 326 (354)
T ss_dssp CEECTTST
T ss_pred EecCCCCC
Confidence 99998874
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=100.00 E-value=1.2e-35 Score=293.55 Aligned_cols=296 Identities=13% Similarity=0.118 Sum_probs=227.8
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHc-CCC--CCCCCC--C--cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRD-GKN--QYARGH--G--VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~-~~~--~Y~~~~--G--~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
-++|++.|.|.+..+-|.+.....+.-. +++ .|.-.. + .++|+++|++++....+...+ +++|++++|++++
T Consensus 57 ~~~~~~~gdp~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~-~~~IvvG~Gstel 135 (425)
T d2hoxa1 57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAK-DRYIVFGVGVTQL 135 (425)
T ss_dssp CCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCT-TCEEEEESHHHHH
T ss_pred ceeeCCCCCCCCCCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCC-CCEEEECCCHHHH
Confidence 3689999999988777777666665432 322 233222 2 279999999988766555444 4489999999999
Q ss_pred HHHHHHHc--------cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCC
Q 013883 183 IAATILGL--------INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNP 254 (434)
Q Consensus 183 i~~~~~~l--------~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NP 254 (434)
|.+++.+| ++|||+|+++.|+|+.|....+.+|.+... |.+|.+.++++++++++++++++||||
T Consensus 136 i~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~-------~~~D~~~~~~~~~~~~~ii~l~sPnNP 208 (425)
T d2hoxa1 136 IHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV-------WAGNAANYVNVSNPEQYIEMVTSPNNP 208 (425)
T ss_dssp HHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE-------EEEEGGGGTTCSCGGGEEEEEESSCTT
T ss_pred HHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCc-------cCCCHHHHHhhCCCCceEEEEECCCCC
Confidence 99999999 578999999999999999999998876544 445678888888899999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC-hhhH
Q 013883 255 TGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLT 333 (434)
Q Consensus 255 TG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~ 333 (434)
||.+.. +..+++.+|.||+|.+..| ..+....+++|++.||||.||++|+|+||++++ +.+.
T Consensus 209 tG~l~~----------~v~~~~~~I~DEaY~~~~f-------~~~~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~ 271 (425)
T d2hoxa1 209 EGLLRH----------AVIKGCKSIYDMVYYWPHY-------TPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVY 271 (425)
T ss_dssp TCCCCC----------CSSTTCEEEEECTTCSTTT-------SCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHH
T ss_pred Ccchhh----------hhhhCCEEEEeccccCccc-------cchhhhcCCeEEEEeCHHhccCcchheeeEEeCCHHHH
Confidence 998642 3346999999999965332 223445688999999999999999999997765 6677
Q ss_pred HHHHHHhhccccCCchHHHHHHHHHHhCC-----------hHHHHHHHHHHHHHHHHHHHHhhhCCCEee----------
Q 013883 334 WGVRQAHSFLTFATSTPMQWAATAALRAP-----------ETYYEELKRDYSAKKAILVEGLNAVGFKVF---------- 392 (434)
Q Consensus 334 ~~l~~~~~~~~~~~~~~~q~a~~~~L~~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~---------- 392 (434)
+++.+.....+++++.+.|.++..+|+.. .++++..++.++++++.+++.|++.+....
T Consensus 272 ~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~ 351 (425)
T d2hoxa1 272 NNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCN 351 (425)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEET
T ss_pred HHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCcccee
Confidence 88888888888999999999999988642 345677788999999999999988753221
Q ss_pred -----cCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCCC
Q 013883 393 -----PSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFY 434 (434)
Q Consensus 393 -----~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F~ 434 (434)
.+..+.|.|++... ++.+++.++++++||.++||+.|+
T Consensus 352 f~~~~~~~~~~f~wl~~~~----~~~~~~~~lL~e~gI~v~pGs~FG 394 (425)
T d2hoxa1 352 YFRRMRPPSPSYAWVKCEW----EEDKDCYQTFQNGRINTQNGVGFE 394 (425)
T ss_dssp TTTEEECCCCSEEEEEECS----GGGCSHHHHHHHTTEECEEGGGGT
T ss_pred eeeeccCCCcceeeeeCCC----ChHHHHHHHHHhCCEEEEechhcC
Confidence 12222356666532 234456677788899999999884
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.96 E-value=3.5e-29 Score=243.75 Aligned_cols=295 Identities=16% Similarity=0.068 Sum_probs=207.3
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
..+||.....+++.++...+.+ . ..+.+..+.+++++..++.+. .++.+++++++|+++++..++.+
T Consensus 21 ~i~~~~gl~~~~~~~~~~~~~~----~---~~~~~~~~~~~l~~~~~~~~~------~~~~e~~~~~~~~~~a~~~~l~a 87 (366)
T d2aeua1 21 ALYDLSGLSGGFLIDEKDKALL----N---TYIGSSYFAEKVNEYGLKHLG------GDENDKCVGFNRTSSAILATILA 87 (366)
T ss_dssp GCEECSSCCCCCCCCHHHHHHH----T---STTHHHHHHHHHHHHHHHHHT------CCTTEEEEEESSHHHHHHHHHHH
T ss_pred hHhhhccCCCCCCccHHHHHHH----H---HhcCchhhHHHHHHHHHHHcc------CCCccEEEEeCCHHHHHHHHHHH
Confidence 4678876566666666554433 1 123333455677777777765 22323799999999999999988
Q ss_pred ccCCCCeEEEc-CCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHH
Q 013883 190 LINPGDEVILF-APFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIA 268 (434)
Q Consensus 190 l~~~gd~Vlv~-~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~ 268 (434)
+..++|.|+++ .|.|+.+...++..|++++. .+ |++++++++++++++|++++|+||++ ++.+++++|+
T Consensus 88 l~~~~~vi~~~~~~~~~~~~~~~~l~g~~~v~--~~------d~e~l~~~i~~~tk~i~~~~p~n~~~--~~~~~l~~i~ 157 (366)
T d2aeua1 88 LKPKKVIHYLPELPGHPSIERSCKIVNAKYFE--SD------KVGEILNKIDKDTLVIITGSTMDLKV--IELENFKKVI 157 (366)
T ss_dssp HCCSEEEEECSSSSCCTHHHHHHHHTTCEEEE--ES------CHHHHHTTCCTTEEEEEECBCTTSCB--CCHHHHHHHH
T ss_pred hCCCCEEEEecCCCcchhHHHHHHhcCCeEEC--CC------CHHHHHHhcCCCceEEEEEecCCCCc--CCHHHHHHHH
Confidence 76444434444 58999999999999998653 33 79999999999999999999999864 5778999999
Q ss_pred HHHHHcCcEEEEcCcCCccccCCCCcc-ccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCC
Q 013883 269 SLCIENDVLVFSDEVYDKLAFEMDHIS-IASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT 347 (434)
Q Consensus 269 ~la~~~~~~iI~Deay~~~~~~~~~~~-~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~ 347 (434)
++|++||+++|+||+|..+.++..... ... .+..+++.|+||.+ +|+|+||+++++++++.++..++...++.
T Consensus 158 ~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~----~~~di~~~S~sK~~--~g~~~G~i~~~~~~i~~~~~~~~~~g~~~ 231 (366)
T d2aeua1 158 NTAKNKEAIVFVDDASGARVRLLFNQPPALK----LGADLVVTSTDKLM--EGPRGGLLAGKKELVDKIYIEGTKFGLEA 231 (366)
T ss_dssp HHHHHHTCCEEEECTTHHHHHHHTTCCCHHH----HTCSEEEEETTSSS--SSCSCEEEEEEHHHHHHHHHHHHTTTCBC
T ss_pred HHhccCcEEEEEecCccccccccccCCCHhh----cCceEEEecccccc--cccceeEEEecHHHHHHHHHHHhcccccC
Confidence 999999999999999987766533221 111 13348889999976 49999999999999999999888888888
Q ss_pred chHHHHHHHHHHhCCh-HHHHHHHHHHHH----HHHHHHHHhh---hCCCEeecCCeeEEEeeecCCC---CCCCHHHHH
Q 013883 348 STPMQWAATAALRAPE-TYYEELKRDYSA----KKAILVEGLN---AVGFKVFPSSGTYFVVVDHTPF---GHETDIAFC 416 (434)
Q Consensus 348 ~~~~q~a~~~~L~~~~-~~~~~~~~~~~~----~~~~l~~~L~---~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 416 (434)
+++.|+++...|+... ..+++..++.++ ..+.+..... ........+.+.+++|...... ...++.+++
T Consensus 232 ~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 311 (366)
T d2aeua1 232 QPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIG 311 (366)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhccccccccccCcccccCccchhccCCCcceeecccCHHHHH
Confidence 9999999998887531 112222221111 1122222222 2223344455666776654322 112456899
Q ss_pred HHHHHhcCeEEECCCCC
Q 013883 417 EYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 417 ~~Ll~~~GV~v~pG~~F 433 (434)
.+|++++||.+.||..|
T Consensus 312 ~~Ll~~~gV~~ip~~~~ 328 (366)
T d2aeua1 312 FNLLKNYGIITITVAGM 328 (366)
T ss_dssp HHHHHHHCEECSTTSSS
T ss_pred HHHHHhCCEEEEECCCC
Confidence 99999999999999876
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.91 E-value=4.7e-24 Score=206.41 Aligned_cols=222 Identities=18% Similarity=0.199 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCC-CCC
Q 013883 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRP-PDF 228 (434)
Q Consensus 150 ~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~-~~~ 228 (434)
.+++.+|++++ .+ ++++|+|+++|+.+++.++++|||+|+++.++|......++..|++++.+|.++ .++
T Consensus 51 ~~~~~~A~~~g--------~e-~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~ 121 (364)
T d2e7ja1 51 FIHNQLPKFLG--------CD-VARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDY 121 (364)
T ss_dssp HHHTHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTC
T ss_pred HHHHHHHHHhC--------cC-EEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchHHHhccceEEEeeecccccc
Confidence 45666777665 45 799999999999999999999999999999999998888999999999999865 468
Q ss_pred CCCHHHHHhhcccC-----CcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 229 AIPIEELKSTISKN-----TRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 229 ~~d~~~l~~~i~~~-----~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
.+|++.+++++++. +++|++++|+||||.+.+ +++|+++|++||+++|+|++|....+. .....+
T Consensus 122 ~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~~---~~~~~~---- 191 (364)
T d2e7ja1 122 AITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMP---VSLKEI---- 191 (364)
T ss_dssp CCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBC---CCHHHH----
T ss_pred ccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhhh---hccccc----
Confidence 89999999999653 357888999999999986 667999999999999999999753321 112111
Q ss_pred CceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhc--------cccCCchHHHHHHHHHHhCChHHHHHHHHHHHH
Q 013883 304 ERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSF--------LTFATSTPMQWAATAALRAPETYYEELKRDYSA 375 (434)
Q Consensus 304 ~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~--------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~ 375 (434)
+..+++.|++|.++.+| ++||+++++++++.+...... ...........++...+....+.++...+. .+
T Consensus 192 g~D~~~~S~~K~~~~~g-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~ 269 (364)
T d2e7ja1 192 GADFIVGSGHKSMAASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEE-VE 269 (364)
T ss_dssp TCSEEEEEHHHHSSCCS-SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHH-HH
T ss_pred ccceeeeccccccCCCC-CEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 23478899999999555 799999998876544321111 011222233333334443322233333333 34
Q ss_pred HHHHHHHHhhhCCCEee
Q 013883 376 KKAILVEGLNAVGFKVF 392 (434)
Q Consensus 376 ~~~~l~~~L~~~g~~~~ 392 (434)
+++.+.+.|++.|+.+.
T Consensus 270 ~~~~~~~~l~~~g~~~~ 286 (364)
T d2e7ja1 270 KARRFAAEMEKLGIKQL 286 (364)
T ss_dssp HHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHcCCeec
Confidence 56677888888888765
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.2e-21 Score=190.73 Aligned_cols=293 Identities=11% Similarity=0.092 Sum_probs=214.8
Q ss_pred CeeEeCCC-CCCCCCcHHHHHHHHHHHHcCCCC-------CCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 110 GAINLGQG-FPNFDGPDFVKDAAIQAIRDGKNQ-------YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 110 ~~i~l~~g-~p~~~~~~~v~~~~~~~~~~~~~~-------Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
..+||+.. |.++..+|.+++++.+++++-... +....-+.+|++.+|++++ .+ ..++.+++..
T Consensus 39 ~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g--------~e-~al~~~SG~~ 109 (383)
T d1bs0a_ 39 QYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG--------YS-RALLFISGFA 109 (383)
T ss_dssp EEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT--------CS-EEEEESCHHH
T ss_pred EEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcC--------CC-ceEEecccch
Confidence 57999875 888888999999999998862111 1111223677788888776 45 6778888899
Q ss_pred HHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc---CCcEEEecCCCCCcccC
Q 013883 182 AIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK---NTRAILMNTPHNPTGKM 258 (434)
Q Consensus 182 ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~---~~~~i~~~~p~NPTG~~ 258 (434)
+...++.++..++|.|++..-.|......++..+.+++.++.. |++++++.+.. +.++|++..+.+.+|.+
T Consensus 110 an~~~i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~hn------d~~~le~~l~~~~~~~~~vv~e~v~s~~G~i 183 (383)
T d1bs0a_ 110 ANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHN------DVTHLARLLASPCPGQQMVVTEGVFSMDGDS 183 (383)
T ss_dssp HHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECTT------CHHHHHHHHHSCCSSCEEEEEESBCTTTCCB
T ss_pred hhHHHHHhhcCCCceEEeeccccHHHhhccccCCCcceEecch------HHHHHHHHhcccCCCceEEEecCCCCCCCcc
Confidence 9999999999999999999999999999999999999888765 67788777644 56677888899999999
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHH
Q 013883 259 FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQ 338 (434)
Q Consensus 259 ~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~ 338 (434)
.+.+ +|.++|++||+++|+||+|....++..........+. ...+.+.+++|.+|..| |++.++.++++.++.
T Consensus 184 ~pl~---~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~-~~~~~~~t~~ka~g~~G---g~v~~~~~~~~~l~~ 256 (383)
T d1bs0a_ 184 APLA---EIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV-KPELLVVTFGKGFGVSG---AAVLCSSTVADYLLQ 256 (383)
T ss_dssp CCHH---HHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTC-CCSEEEEESSSTTSSCC---EEEEECHHHHHHHHH
T ss_pred cchh---HHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCC-ccccccccccccccccc---cccccchhHHHHHHh
Confidence 9754 4777899999999999999998887654443333332 34466789999999776 999999999998876
Q ss_pred HhhccccC--CchHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEE-EeeecCCCCCCCHHH
Q 013883 339 AHSFLTFA--TSTPMQWAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYF-VVVDHTPFGHETDIA 414 (434)
Q Consensus 339 ~~~~~~~~--~~~~~q~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~ 414 (434)
......++ .+++...++..+++-. ....+..+.++.++..++.+.|+++|+.+.+....+. +++.- .....+
T Consensus 257 ~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~~s~Ii~v~~g~----~~~a~~ 332 (383)
T d1bs0a_ 257 FARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSAIQPLIVGD----NSRALQ 332 (383)
T ss_dssp HCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSCCSSBCCEEEES----HHHHHH
T ss_pred hchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCccCCCCCCEEEEEECC----HHHHHH
Confidence 54433333 2333333434444321 2234556778888999999999999998876655432 23321 112457
Q ss_pred HHHHHHHhcCeEEEC
Q 013883 415 FCEYLIKEVGVVAIP 429 (434)
Q Consensus 415 ~~~~Ll~~~GV~v~p 429 (434)
+.++|+++ ||++.|
T Consensus 333 ~~~~L~~~-Gi~v~~ 346 (383)
T d1bs0a_ 333 LAEKLRQQ-GCWVTA 346 (383)
T ss_dssp HHHHHHHT-TEECCE
T ss_pred HHHHHHHC-CceEEE
Confidence 88888765 999876
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1e-21 Score=192.08 Aligned_cols=250 Identities=16% Similarity=0.129 Sum_probs=176.9
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCCCCCC-----------cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 121 FDGPDFVKDAAIQAIRDGKNQYARGHG-----------VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 121 ~~~~~~v~~~~~~~~~~~~~~Y~~~~G-----------~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
-+.++.+++++.+.+.+....+.|..+ +.++|+.++++++ ++++ +|++++|+++++..++.+
T Consensus 12 ~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg------~~~~-~I~~~~~~t~~l~~~~~~ 84 (391)
T d1p3wa_ 12 TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVG------ADPR-EIVFTSGATESDNLAIKG 84 (391)
T ss_dssp CCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHT------CCGG-GEEEESSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcC------CCCC-cEEEECCHHHHHHHHHhh
Confidence 356788888887776653322223221 2356777888776 6677 899999999999888876
Q ss_pred c----cCCCCeEEEcCCCchhHHHHH---HHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHH
Q 013883 190 L----INPGDEVILFAPFYDSYEATL---SMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTRE 262 (434)
Q Consensus 190 l----~~~gd~Vlv~~p~y~~~~~~~---~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e 262 (434)
+ +++||+|++.++.|+.+...+ +..|++++.+|.+. ++.+|++.++++++++|++|++++++||||.+++.
T Consensus 85 ~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~~- 162 (391)
T d1p3wa_ 85 AANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR-NGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDI- 162 (391)
T ss_dssp HHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT-TSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCCH-
T ss_pred hhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCC-CCeEcHHHHHHhCCCCcEEEEEECCCCCCeeECCH-
Confidence 5 589999999999999876554 45699999999875 67899999999999999999999999999999974
Q ss_pred HHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHH---
Q 013883 263 ELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQA--- 339 (434)
Q Consensus 263 ~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~--- 339 (434)
++|+++|++||+++++|.+|..... ...+..+ +..+++.|..|.+|.+| +|+++.+++........
T Consensus 163 --~~I~~~~~~~~~~~ivD~~~~~g~~---~~d~~~~----~~D~~~~s~~k~~g~~g--~g~~~~~~~~~~~~~~~~~g 231 (391)
T d1p3wa_ 163 --AAIGEMCRARGIIYHVDATQSVGKL---PIDLSQL----KVDLMSFSGHKIYGPKG--IGALYVRRKPRVRIEAQMHG 231 (391)
T ss_dssp --HHHHHHHHHHTCEEEEECTTTBTTB---CCCTTTS----CCSEEEEESTTTTSCSS--CEEEEECBTTBCCCCCSSCS
T ss_pred --HHHHHHhccCCcEEEEeeccccCCc---cccchhc----cccccccccccccCCCc--eEEEEEecchhcccCCcccC
Confidence 5689999999999999999976432 1222222 23477889999988665 68888876644322111
Q ss_pred ----hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCE
Q 013883 340 ----HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFK 390 (434)
Q Consensus 340 ----~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 390 (434)
........+.....++...+....+......+++++.++.+.+.|...+..
T Consensus 232 g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 286 (391)
T d1p3wa_ 232 GGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEV 286 (391)
T ss_dssp SCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTE
T ss_pred CccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHhhcCe
Confidence 111223333344444444444333344555667777888888888877433
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=4.2e-21 Score=188.03 Aligned_cols=297 Identities=18% Similarity=0.126 Sum_probs=212.4
Q ss_pred cCCeeEeCCC-CCCCCCcHHHHHHHHHHHHcCCCCCCCC-------CCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCCh
Q 013883 108 KHGAINLGQG-FPNFDGPDFVKDAAIQAIRDGKNQYARG-------HGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGC 179 (434)
Q Consensus 108 ~~~~i~l~~g-~p~~~~~~~v~~~~~~~~~~~~~~Y~~~-------~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~ 179 (434)
+...|||+.. |.++..+|.+++++.+++++....+... .-+.+|.+.++++++ .+ .+++.+++
T Consensus 44 G~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g--------~e-~al~~~SG 114 (401)
T d1fc4a_ 44 GSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLG--------ME-DAILYSSC 114 (401)
T ss_dssp SCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHT--------CS-EEEEESCH
T ss_pred CCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhc--------CC-ceEEecch
Confidence 3467999875 8888889999999999987633333222 123467777777776 45 68899999
Q ss_pred HHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc---c---CCcEEEecCCCC
Q 013883 180 TEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS---K---NTRAILMNTPHN 253 (434)
Q Consensus 180 ~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~---~---~~~~i~~~~p~N 253 (434)
.++...++.++.+++|.|++..-.|..+...+...++++..++.. |.+++++.+. . ..++|++....+
T Consensus 115 ~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~------d~~~le~~~~~~~~~~~~~~liv~egv~s 188 (401)
T d1fc4a_ 115 FDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANN------DMQELEARLKEAREAGARHVLIATDGVFS 188 (401)
T ss_dssp HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTT------CHHHHHHHHHHHHHTTCSSEEEEEESEET
T ss_pred hhhhHHHHHHhcCCCcEEEeCCcchHHHHccccccCceEEEEcCC------ChHHHHHHHHHhhhcccCceEEEEcCCCC
Confidence 999999999999999999999999999999999999999887655 5555555442 2 334556666677
Q ss_pred CcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCC-CCCCCceEEEccCChhhccccceeeeEEeChhh
Q 013883 254 PTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL 332 (434)
Q Consensus 254 PTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~-~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~ 332 (434)
..|...+ +++|.++|++||+++|+||++..+.++......... ....+..+++.|++|.+| |...|++.++.++
T Consensus 189 ~~G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~g--g~~Gg~v~g~~~~ 263 (401)
T d1fc4a_ 189 MDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALG--GASGGYTAARKEV 263 (401)
T ss_dssp TTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC--SSSCEEEEECHHH
T ss_pred CCCchhh---hhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccc--cCCcccccCCHHH
Confidence 7787765 677888999999999999999998887644333222 223455688999999995 4446999999999
Q ss_pred HHHHHHHhhccc--cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCC
Q 013883 333 TWGVRQAHSFLT--FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHE 410 (434)
Q Consensus 333 ~~~l~~~~~~~~--~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (434)
++.++....... ...+++...++...++.. ...++++++++++.+++++.+...|+.+...+..++. +.+.. ..
T Consensus 264 ~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~-~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~~~pIv~-v~~~~--~~ 339 (401)
T d1fc4a_ 264 VEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV-EAGSELRDRLWANARQFREQMSAAGFTLAGADHAIIP-VMLGD--AV 339 (401)
T ss_dssp HHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHTTCCBCCSSSSEEE-EEEEC--HH
T ss_pred HHHHHcCChhhhhcCCCCHHHHHHHHhhhccc-ccCHHHHHHHHHHHHHHHhhhcccCCccCCCCCCEEE-EEECC--HH
Confidence 988875543322 233444444555555432 1235678889999999999999999887766655432 22211 11
Q ss_pred CHHHHHHHHHHhcCeEEEC
Q 013883 411 TDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 411 ~~~~~~~~Ll~~~GV~v~p 429 (434)
...+++++|+++ ||++.|
T Consensus 340 ~a~~~~~~L~~~-Gi~v~~ 357 (401)
T d1fc4a_ 340 VAQKFARELQKE-GIYVTG 357 (401)
T ss_dssp HHHHHHHHHHHT-TEECCE
T ss_pred HHHHHHHHHHHC-CceEEe
Confidence 244788888765 999764
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.87 E-value=7.9e-21 Score=184.53 Aligned_cols=296 Identities=17% Similarity=0.157 Sum_probs=211.7
Q ss_pred CeeEeCCC-CCCCCCcHHHHHHHHHHHHcCCCCCCC---CCC----cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 110 GAINLGQG-FPNFDGPDFVKDAAIQAIRDGKNQYAR---GHG----VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 110 ~~i~l~~g-~p~~~~~~~v~~~~~~~~~~~~~~Y~~---~~G----~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
.++||+.+ |.++..+|.+++++.+++++-..+... ..| +.+|++.+|++++ .+ ..++.+.+..
T Consensus 46 ~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g--------~e-~all~~sG~~ 116 (396)
T d2bwna1 46 DITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ--------KE-AALVFSSAYN 116 (396)
T ss_dssp EEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT--------CS-EEEEESCHHH
T ss_pred EEEEEEcccccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhC--------CC-ceeeeecchH
Confidence 67999876 999999999999999998862111111 123 2466667777665 34 5777777788
Q ss_pred HHHHHHHHc--cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcc---c-CCcEEEecCCCCCc
Q 013883 182 AIAATILGL--INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTIS---K-NTRAILMNTPHNPT 255 (434)
Q Consensus 182 ai~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~---~-~~~~i~~~~p~NPT 255 (434)
|...++.++ ..++|.|+...-.|....+.++..+++++.++.. |.+++++.++ + +.+.|++....+.+
T Consensus 117 An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn------d~~~l~~l~~~~~~~~~~~iv~egvySmd 190 (396)
T d2bwna1 117 ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN------DVAHLRELIAADDPAAPKLIAFESVYSMD 190 (396)
T ss_dssp HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT------CHHHHHHHHHHSCTTSCEEEEEESBCTTT
T ss_pred HHHHHHHHHhcccCCCceeehhhhhhccchhhhccccCceEeecc------hHHHhhhHHhhhcccCceeEEEEeeccCc
Confidence 888888877 4688999999999999999999999999888655 5666665553 2 44667777889999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCC-CCCCCceEEEccCChhhccccceeeeEEeChhhHH
Q 013883 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTW 334 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~-~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~ 334 (434)
|.+.| +++|++++++||+++++||+|+..+++.....+... ....+..++++||+|.+|..| |++.+++++++
T Consensus 191 Gd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G---g~v~~~~~~i~ 264 (396)
T d2bwna1 191 GDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAASARMVD 264 (396)
T ss_dssp CCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEECHHHHH
T ss_pred ccccc---cHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccc---cccchhHHHHH
Confidence 99886 556888899999999999999998887654433321 112345789999999999777 99999999999
Q ss_pred HHHHHhhccccCCc--hHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCC
Q 013883 335 GVRQAHSFLTFATS--TPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHET 411 (434)
Q Consensus 335 ~l~~~~~~~~~~~~--~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (434)
.++...+...|+.+ ++...++..+++- ..+..++.+..++.+.+++++.|.+.|+.+.......+. +.+. ....
T Consensus 265 ~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~spIvp-v~ig--~~~~ 341 (396)
T d2bwna1 265 AVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSHIVP-VVIG--DPVH 341 (396)
T ss_dssp HHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSSCEE-EECC--CHHH
T ss_pred HHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCEEE-EEeC--CHHH
Confidence 99876665545443 3333333343432 122345567788888999999999999887665444332 2221 1112
Q ss_pred HHHHHHHHHHhcCeEEEC
Q 013883 412 DIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 412 ~~~~~~~Ll~~~GV~v~p 429 (434)
..+++++|++++||++.+
T Consensus 342 ~~~~a~~lL~e~Gi~v~~ 359 (396)
T d2bwna1 342 TKAVSDMLLSDYGVYVQP 359 (396)
T ss_dssp HHHHHHHHHHHHCEECCE
T ss_pred HHHHHHHHHHhCCEEEEE
Confidence 457788888878998865
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.84 E-value=1.3e-19 Score=176.19 Aligned_cols=296 Identities=17% Similarity=0.160 Sum_probs=193.5
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHc----CCCCCCCCCC----cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRD----GKNQYARGHG----VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~----~~~~Y~~~~G----~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
+.+-|..+..+ +.|..+.+++.+.+++ +...|..... +.++|+.++++++ .+++ +|++|+|+++
T Consensus 7 ~~~yld~~~~~-~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~-~i~~~~g~t~ 78 (381)
T d1elua_ 7 NKTYFNFGGQG-ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFN------VDPN-TITITDNVTT 78 (381)
T ss_dssp TSEECCTTTCC-CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTT------SCGG-GEEEESSHHH
T ss_pred CCEEeeCCccc-CCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhC------CCcc-cEEEECChHH
Confidence 34556555433 2344567777666543 2222222112 2345566666655 5677 8999999999
Q ss_pred HHHHHHHHc-cCCCCeEEEcCCCchhHHH----HHHHcCCEEEEEEcCCCC-CCCCHHHHHhhcccCCcEEEecCCCCCc
Q 013883 182 AIAATILGL-INPGDEVILFAPFYDSYEA----TLSMAGAKIKCITLRPPD-FAIPIEELKSTISKNTRAILMNTPHNPT 255 (434)
Q Consensus 182 ai~~~~~~l-~~~gd~Vlv~~p~y~~~~~----~~~~~G~~~~~v~~~~~~-~~~d~~~l~~~i~~~~~~i~~~~p~NPT 255 (434)
++.+++.++ .++||+|++.++.|+.... ..+..|++++.+|.+... ...+.+.++++++++++++++++++|||
T Consensus 79 a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~t 158 (381)
T d1elua_ 79 GCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNT 158 (381)
T ss_dssp HHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTT
T ss_pred HhhhcchhhhhcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcccccccccccccccc
Confidence 999999988 6899999999999987544 445579999999887533 2334677888999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHc----CcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh
Q 013883 256 GKMFTREELNVIASLCIEN----DVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH 331 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~----~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~ 331 (434)
|.+++.++ |.++|++| ++++++|.++.... ....+.. .+..+++.|+.|.++ ...++|+++.+++
T Consensus 159 G~~~~~~~---I~~l~~~~~~~~~~~~~vD~~~~~g~---~~~~~~~----~~~D~~~~s~~K~~~-~p~G~g~l~~~~~ 227 (381)
T d1elua_ 159 GQVLPLAE---IMAVCRRHQGNYPVRVLVDGAQSAGS---LPLDFSR----LEVDYYAFTGHKWFA-GPAGVGGLYIHGD 227 (381)
T ss_dssp CCBCCHHH---HHHHHHHCCSSSCCEEEEECTTTBTT---BCCCTTT----SCCSEEEEESSSTTC-CCTTCEEEEECTT
T ss_pred cccchhhH---HHHHHhhccccccccccccccccccc---ccccccc----ccccccccccccccc-ccchhhHHHhhHH
Confidence 99998655 77777774 69999999987532 1122221 234588999999997 4456899998877
Q ss_pred hHHHHHHH----------------------hhccccCCchHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHHHhhhC
Q 013883 332 LTWGVRQA----------------------HSFLTFATSTPMQWAATAALRAPET--YYEELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 332 ~~~~l~~~----------------------~~~~~~~~~~~~q~a~~~~L~~~~~--~~~~~~~~~~~~~~~l~~~L~~~ 387 (434)
..+++... .+....+.+.....++.++++...+ ..+...++.+++++++.+.|+++
T Consensus 228 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~ 307 (381)
T d1elua_ 228 CLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQL 307 (381)
T ss_dssp TGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcC
Confidence 66543211 0111223444445555555543211 12344567778889999999987
Q ss_pred -CCEeec---CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 388 -GFKVFP---SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 388 -g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
|++++. +.++++.| .+. +..+.++++++| +++||.+.
T Consensus 308 ~~~~~~~~~~~~~~~vsf-~~~--~~~~~~~i~~~L-~~~gi~v~ 348 (381)
T d1elua_ 308 PHVHCLATSAPQAGLVSF-TVD--SPLGHRAIVQKL-EEQRIYLR 348 (381)
T ss_dssp TTEEESCSSCCSSSEEEE-EEC--SSSCHHHHHHHH-HHTTEECE
T ss_pred CCeEecCCCCccccEEEE-EcC--CCCCHHHHHHHH-HhCCcEEE
Confidence 677653 45665544 232 222456677766 56699875
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=2.6e-20 Score=176.87 Aligned_cols=297 Identities=18% Similarity=0.130 Sum_probs=191.5
Q ss_pred eeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc
Q 013883 111 AINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL 190 (434)
Q Consensus 111 ~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l 190 (434)
.|||...+-.-| +|.+++++.++.. +...|.+.....+|++.++++++ .+ ++++++||++|+..+++++
T Consensus 1 ~~~~~~~~~t~p-~p~v~~A~~~a~~-g~~~yg~~p~~~~le~~lA~~~G--------~~-~~~~~~sGt~A~~~al~a~ 69 (343)
T d1m6sa_ 1 MIDLRSDTVTKP-TEEMRKAMAQAEV-GDDVYGEDPTINELERLAAETFG--------KE-AALFVPSGTMGNQVSIMAH 69 (343)
T ss_dssp CEECSCGGGCCC-CHHHHHHHHTCCC-CCGGGTCCHHHHHHHHHHHHHTT--------CS-EEEEESCHHHHHHHHHHHH
T ss_pred CcccccccCCCC-CHHHHHHHHhhhc-CCcccCCCHHHHHHHHHHHHHHC--------CC-eEEEeCCHHHHHHHHHHHH
Confidence 367765543333 4668877765432 34457776677889999999876 34 6888889999999999999
Q ss_pred cCCCCeEEEcCCCchhHHH---HHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccC------CcE-EEecCCCCCcccCCC
Q 013883 191 INPGDEVILFAPFYDSYEA---TLSMAGAKIKCITLRPPDFAIPIEELKSTISKN------TRA-ILMNTPHNPTGKMFT 260 (434)
Q Consensus 191 ~~~gd~Vlv~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~------~~~-i~~~~p~NPTG~~~~ 260 (434)
.++||.+++..+.+..+.. .....+..+..++.. .+..|++.+++.+... +.. ++...++|+.|.+.+
T Consensus 70 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (343)
T d1m6sa_ 70 TQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGK--NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVP 147 (343)
T ss_dssp CCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEE--TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCC
T ss_pred hccCCceeccccccceeeecccccccccceeeccccc--cCccCHHHHHHhhhhhhcccccccccccccccccCCceecC
Confidence 9999999999998876643 344455566655544 5667899999988753 233 344567899999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHh
Q 013883 261 REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAH 340 (434)
Q Consensus 261 ~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~ 340 (434)
.+++++|+++|++|++++++|++|..+............. ......+.+..|. ..|.+.|+++...+.+......+
T Consensus 148 ~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~ 223 (343)
T d1m6sa_ 148 LENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYA--GYADSVMFCLSKG--LCAPVGSVVVGDRDFIERARKAR 223 (343)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHH--HTCSEEEEESSST--TCCSSCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhc--ccccccccccccc--ccccccccccccHHHHhhhHhhC
Confidence 9999999999999999999999998765432211111111 1122333334443 35667899999988887776665
Q ss_pred hccccCCchHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHH
Q 013883 341 SFLTFATSTPMQWAATAALR--APETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCE 417 (434)
Q Consensus 341 ~~~~~~~~~~~q~a~~~~L~--~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (434)
.....+.+.....++..... ...++.+ ...++...+.+.+.++ +.....+....++|+++...+. +..++++
T Consensus 224 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~a~~l~~ 298 (343)
T d1m6sa_ 224 KMLGGGMRQAGVLAAAGIIALTKMVDRLK----EDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKV-NAHGFIE 298 (343)
T ss_dssp HHHTCCCSSTHHHHHHHHHHHHHSSTTHH----HHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSSS-CHHHHHH
T ss_pred cccccccchhHHHHHhhhhhhhhhHHHHH----HHHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCCcc-cHHHHHH
Confidence 54444444443333322222 1112222 2333444444444443 2333334445577887754443 5778999
Q ss_pred HHHHhcCeEEECC
Q 013883 418 YLIKEVGVVAIPT 430 (434)
Q Consensus 418 ~Ll~~~GV~v~pG 430 (434)
+|+++ ||++.|.
T Consensus 299 ~L~~~-Gi~v~~~ 310 (343)
T d1m6sa_ 299 ALRNS-GVLANAV 310 (343)
T ss_dssp HHHHH-TEECEEE
T ss_pred HHHHC-CCEEecC
Confidence 98765 9998874
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=2.2e-18 Score=167.23 Aligned_cols=284 Identities=18% Similarity=0.196 Sum_probs=181.5
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCCCC-----------cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH-
Q 013883 122 DGPDFVKDAAIQAIRDGKNQYARGHG-----------VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG- 189 (434)
Q Consensus 122 ~~~~~v~~~~~~~~~~~~~~Y~~~~G-----------~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~- 189 (434)
++|+.+.+++.+.+++. |..+.+ +.+.|++++++++ ++++ +|++++|+++++..++..
T Consensus 12 ~~p~~v~ea~~~~~~~~---~~np~~~~~~~~~~~~~~~~aR~~ia~l~~------~~~~-~i~~~~~~T~~l~~~~~~~ 81 (376)
T d1eg5a_ 12 RVDDRVLEEMIVFYREK---YGNPNSAHGMGIEANLHMEKAREKVAKVLG------VSPS-EIFFTSCATESINWILKTV 81 (376)
T ss_dssp CCCHHHHHHHHHHHHTC---CCCTTCSSHHHHHHHHHHHHHHHHHHHHHT------SCGG-GEEEESCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc---CCCCccccHHHHHHHHHHHHHHHHHHHHcC------CCCC-cEEEECCHHHHHHhhhhcc
Confidence 45677888888887753 211111 2345777888876 6777 899999999999988764
Q ss_pred ---ccCCCCeEEEcCCCchhHHHHH---HHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHH
Q 013883 190 ---LINPGDEVILFAPFYDSYEATL---SMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREE 263 (434)
Q Consensus 190 ---l~~~gd~Vlv~~p~y~~~~~~~---~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~ 263 (434)
...+|+.|++....|+.+.... +..|++++.+|+++ ++.+|+++++++++++|++|++++++|+||..++.++
T Consensus 82 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~-~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~ 160 (376)
T d1eg5a_ 82 AETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS-RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVED 160 (376)
T ss_dssp HHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT-TSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHH
T ss_pred cccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCC-CCeECHHHHHHhcCCCceEEEEECCccccceeeeehh
Confidence 4578899999988888876554 45699999999885 6889999999999999999999999999999998777
Q ss_pred HHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHH-----
Q 013883 264 LNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQ----- 338 (434)
Q Consensus 264 l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~----- 338 (434)
+.++++ ++..++++++|.++..... ...+.. .+..+++.|+.|.+|.+|..+.| .+++.. ++.
T Consensus 161 i~~~~~-~~~~~~~~~vD~~q~~g~~---~~d~~~----~~~D~~~~s~~K~~gp~G~~~l~--~~~~~~--~~p~~~g~ 228 (376)
T d1eg5a_ 161 VTRIVK-KKNKETLVHVDAVQTIGKI---PFSLEK----LEVDYASFSAHKFHGPKGVGITY--IRKGVP--IRPLIHGG 228 (376)
T ss_dssp HHHHHH-HHCTTCEEEEECTTTTTTS---CCCCTT----TCCSEEEEEGGGGTSCTTCEEEE--ECTTSC--CCCSBCSS
T ss_pred hhhhhh-hcccCceeEEEeeeccccc---cccccc----cCccceecccceeecCCCceeEE--eccCcc--cCCcccCC
Confidence 555443 3455999999999875321 122222 24458999999999888854444 443321 110
Q ss_pred --HhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeE---EEeeecCCCCCCCHH
Q 013883 339 --AHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTY---FVVVDHTPFGHETDI 413 (434)
Q Consensus 339 --~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~ 413 (434)
.........+......+...+....................+.+.|...+.......... .....+. +. ...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~ 305 (376)
T d1eg5a_ 229 GQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFP--NI-RGS 305 (376)
T ss_dssp CTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECT--TC-CHH
T ss_pred CCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhccccccccccccccccccccceeeeccC--CC-CHH
Confidence 011112223334444443333322222333445555566777777777654444322111 1111111 22 466
Q ss_pred HHHHHHHHhcCeEEECCCC
Q 013883 414 AFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 414 ~~~~~Ll~~~GV~v~pG~~ 432 (434)
.+... ++++||.+++|..
T Consensus 306 ~~~~~-L~~~gI~vr~G~~ 323 (376)
T d1eg5a_ 306 TLQNL-LSGYGIYVSTSSA 323 (376)
T ss_dssp HHHHH-HHHTTEECBC---
T ss_pred HHHHH-HhhCCeEEeCcch
Confidence 66665 4677999988864
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.80 E-value=5.6e-18 Score=160.32 Aligned_cols=302 Identities=14% Similarity=0.079 Sum_probs=190.0
Q ss_pred CCeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 109 HGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 109 ~~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
+..+||+..++ .+.+|.|++++.++.......|.......++|+.++++++ . +. .+++++|+++++..++.
T Consensus 2 ~~~~~f~s~n~-~g~~P~v~~A~~~a~~~~~~~~~~~~~~~~l~~~la~~~g------~-~~-~v~f~~sGt~An~~a~~ 72 (345)
T d1v72a1 2 PPALGFSSDNI-AGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFE------R-DV-EVFLVPTGTAANALCLS 72 (345)
T ss_dssp CCCCBCSCGGG-CCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHT------S-CC-EEEEESCHHHHHHHHHH
T ss_pred CCCcCcCCCCC-CCCCHHHHHHHHHHhccCccccCCCHHHHHHHHHHHHHHC------C-Cc-EEEECCchHHHHHHHHH
Confidence 35678886544 3457889988887654444556555556678888887775 2 23 69999999999999999
Q ss_pred HccCCCCeEEEcCCCchhHHH---HHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccC------Cc-EEEecCCCCCcccC
Q 013883 189 GLINPGDEVILFAPFYDSYEA---TLSMAGAKIKCITLRPPDFAIPIEELKSTISKN------TR-AILMNTPHNPTGKM 258 (434)
Q Consensus 189 ~l~~~gd~Vlv~~p~y~~~~~---~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~------~~-~i~~~~p~NPTG~~ 258 (434)
.++.+++.+++....+..+.. .....+..+..++.+ .++..+++.+++.+... +. .++...+.|+.|..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (345)
T d1v72a1 73 AMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDG-PAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSI 151 (345)
T ss_dssp TSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCC-GGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCC
T ss_pred HHHhcCCccccccccceeeechhhHHHhcCccccccccc-ccccccHHHhhhhhcccccccccccceeeeeecccccccc
Confidence 999999988887777666543 334456666655444 25678999999988763 22 34556778899999
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHH
Q 013883 259 FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQ 338 (434)
Q Consensus 259 ~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~ 338 (434)
.+.++++++.++|++||+++++|+++..+.+..............+......+..|..+ .+. .+.+............
T Consensus 152 ~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 229 (345)
T d1v72a1 152 YTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGV-LAA-EAIVLFNTSLATEMSY 229 (345)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTC-SSC-EEEEESSGGGHHHHHH
T ss_pred ccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCcccccc-ccc-cccccchhhhhhhccc
Confidence 99999999999999999999999999876544333222222111222334444444433 222 2223333333332222
Q ss_pred HhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecCCeeEEEeeecCCCCCCCHHHHHH
Q 013883 339 AHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFPSSGTYFVVVDHTPFGHETDIAFCE 417 (434)
Q Consensus 339 ~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (434)
.........+.....++.......+....+...+..++...+.+.+.+. |+.+..+..+.++++++ +.+.++
T Consensus 230 ~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~-------~~~~~~ 302 (345)
T d1v72a1 230 RRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRL-------DSAMID 302 (345)
T ss_dssp HHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEE-------CHHHHH
T ss_pred cccccccccchhhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEc-------CHHHHH
Confidence 2222223333333333332222222233444555666677777888876 77777666666778876 236778
Q ss_pred HHHHhcCeEEECC
Q 013883 418 YLIKEVGVVAIPT 430 (434)
Q Consensus 418 ~Ll~~~GV~v~pG 430 (434)
+|+++ ||.+.++
T Consensus 303 ~L~~~-gi~v~~~ 314 (345)
T d1v72a1 303 ALLKA-GFGFYHD 314 (345)
T ss_dssp HHHHT-TCBCBCS
T ss_pred HHHHc-CCCcccc
Confidence 88765 8877554
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.80 E-value=8.8e-18 Score=162.76 Aligned_cols=273 Identities=18% Similarity=0.150 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc-cCCCCeEEEcCCC
Q 013883 125 DFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL-INPGDEVILFAPF 203 (434)
Q Consensus 125 ~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vlv~~p~ 203 (434)
+.-++++.+.++.+. |.......+|++.++++++ .+ ..+++++|+.|+.+++.++ +++||+|++++.+
T Consensus 12 ~~~~~~~~~~~~~~~--~~~G~~v~~~E~~la~~~g--------~~-~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~ 80 (376)
T d1mdoa_ 12 AEELAAVKTVLDSGW--ITTGPKNQELEAAFCRLTG--------NQ-YAVAVSSATAGMHIALMALGIGEGDEVITPSMT 80 (376)
T ss_dssp HHHHHHHHHHHHHTC--CSSSHHHHHHHHHHHHHHC--------CS-EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred HHHHHHHHHHHhcCC--CcCCHHHHHHHHHHHHHHC--------cC-eEEEeCCHHHHHHHHHHHhCCCCCCEEEEeccc
Confidence 444577888888763 3333356788999999887 34 6777888899999999998 8999999999999
Q ss_pred chhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCc
Q 013883 204 YDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEV 283 (434)
Q Consensus 204 y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Dea 283 (434)
|......+...|++++.++.+++++.+|++.++++++++|++|+++ +..|... ++++|.++|+++|++||+|++
T Consensus 81 ~~~~~~ai~~~g~~pv~~d~~~~~~~~d~~~l~~~i~~~tkaIi~~---h~~G~~~---~~~~i~~i~~~~~i~vIeD~a 154 (376)
T d1mdoa_ 81 WVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPV---HYAGAPA---DLDAIYALGERYGIPVIEDAA 154 (376)
T ss_dssp CHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCB---CGGGCCC---CHHHHHHHHHHHTCCBCEECT
T ss_pred ccccccchhccccceeeecccccccCCCHHHHHHhcCCCCeEEEEe---CCCCCcc---chhHHHHHHHhcCceEEeccc
Confidence 9999999999999999999998889999999999999999999875 4678776 466788889999999999999
Q ss_pred CCccccCCCCccccCCCCCCCceEEEccC--ChhhccccceeeeEEeC-hhhHHHHHHHhhcc-----------------
Q 013883 284 YDKLAFEMDHISIASLPGMYERTVTMNSL--GKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFL----------------- 343 (434)
Q Consensus 284 y~~~~~~~~~~~~~~~~~~~~~~i~i~S~--SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~----------------- 343 (434)
+.....-. .... +..+ ..+.|| +|.++ .|. .|.++++ +++.+.++.++...
T Consensus 155 ~a~g~~~~-~~~~----g~~g--~~~~Sf~~~K~l~-~g~-GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 225 (376)
T d1mdoa_ 155 HATGTSYK-GRHI----GARG--TAIFSFHAIKNIT-CAE-GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQA 225 (376)
T ss_dssp TCTTCEET-TEET----TSSS--EEEEECCTTSSSC-SSS-CEEEEESCHHHHHHHHHHTBTTEECC-----------CC
T ss_pred hhccCeeC-Ceec----cccc--CccccCCCcCCCC-CCC-CCEEEEechhHHHHHHhhcccCCcccccccccccccccc
Confidence 98653211 1111 1222 234455 58886 443 5777765 55556565554322
Q ss_pred -------ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEee-cCCe----eEEEeeecCC---CC
Q 013883 344 -------TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVF-PSSG----TYFVVVDHTP---FG 408 (434)
Q Consensus 344 -------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~----~~~~~~~~~~---~~ 408 (434)
.+..+....+....-|.. +++..++.++..+.+.+.|.+..+... .... .++.++.... .+
T Consensus 226 ~~~~~g~n~~~~~~~Aai~~~qL~~----~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (376)
T d1mdoa_ 226 EVLAPGYKYNLPDLNAAIALAQLQK----LDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCG 301 (376)
T ss_dssp EESSCCCBCCCCHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHS
T ss_pred cchhcccccccchhhhhhhhhhhhh----hhHHHHHHhhhhhhhhhhcccccccccccccccccccccccccccccccch
Confidence 112223333333444443 344455566677778888877644322 1111 1111111111 11
Q ss_pred CCCHHHHHHHHHHhcCeEEEC
Q 013883 409 HETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 409 ~~~~~~~~~~Ll~~~GV~v~p 429 (434)
. +..++.++|. +.||.+.+
T Consensus 302 ~-~Rd~l~~~L~-~~gI~~~~ 320 (376)
T d1mdoa_ 302 I-TRDALMASLK-TKGIGTGL 320 (376)
T ss_dssp S-CHHHHHHHHH-HTTBCCBC
T ss_pred h-hHHHHHHHHH-HCCCCeee
Confidence 1 2356888775 45998764
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=1e-17 Score=164.24 Aligned_cols=298 Identities=17% Similarity=0.163 Sum_probs=201.1
Q ss_pred eeEeCCCCCCCCCcHHHHHHHHHHHHcCCCC-CCCCC--C------cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 111 AINLGQGFPNFDGPDFVKDAAIQAIRDGKNQ-YARGH--G------VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 111 ~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~-Y~~~~--G------~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
.+-|..+.-+ +.|..+.+++.+.+++.... ..... | +.+.|+.++++++ . .+++ +|+++.|+++
T Consensus 23 ~iYld~a~~~-~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~----~-~~~~-~i~~~~~~T~ 95 (405)
T d1jf9a_ 23 LAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN----A-RSAE-ELVFVRGTTE 95 (405)
T ss_dssp CEECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTT----C-SCGG-GEEEESSHHH
T ss_pred eEEEeCcccc-CCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcC----C-CCcc-cccccCcHHH
Confidence 4566555433 55777888888877653211 10110 1 2345666666654 1 2235 8999999999
Q ss_pred HHHHHHHH----ccCCCCeEEEcCCCchhH----HHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCC
Q 013883 182 AIAATILG----LINPGDEVILFAPFYDSY----EATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHN 253 (434)
Q Consensus 182 ai~~~~~~----l~~~gd~Vlv~~p~y~~~----~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~N 253 (434)
++..++.. ...+||+|++.+-.|++. ....+..|++++.+|.++ ++.+|++.++++++++|+++.++..+|
T Consensus 96 ~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~-~g~~~~~~~~~~i~~~t~lv~~~~v~~ 174 (405)
T d1jf9a_ 96 GINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP-DGTLQLETLPTLFDEKTRLLAITHVSN 174 (405)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT-TSCBCGGGHHHHCCTTEEEEEEESBCT
T ss_pred HHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCC-CCcCCHHHHHHhccCCcEEEEEecCCC
Confidence 99888775 358899999999998874 444567899999999985 678999999999999999999999999
Q ss_pred CcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhH
Q 013883 254 PTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT 333 (434)
Q Consensus 254 PTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~ 333 (434)
.||.++| +++|+++|+++|+++++|.++..... ...+..+ +-.+++.|..|.+|.+| +|+++.+++..
T Consensus 175 ~tG~~~p---i~~i~~~~~~~g~~~~vD~~q~~g~~---~id~~~~----~~D~~~~s~hK~~Gp~G--~g~l~v~~~~~ 242 (405)
T d1jf9a_ 175 VLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHH---PVDVQAL----DCDFYVFSGHKLYGPTG--IGILYVKEALL 242 (405)
T ss_dssp TTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH----TCSEEEEEGGGTTSCSS--CEEEEECHHHH
T ss_pred cccccCc---hHHhhhHHHHcCCeeecccceecccc---ccchhhc----CCceeeccccccccCCC--ceeeeechhhh
Confidence 9999996 55588899999999999999876321 1222222 23488999999988666 89999998775
Q ss_pred HHHHH----------------------HhhccccCCchHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHhhhCCCE
Q 013883 334 WGVRQ----------------------AHSFLTFATSTPMQWAATAALRAPET-YYEELKRDYSAKKAILVEGLNAVGFK 390 (434)
Q Consensus 334 ~~l~~----------------------~~~~~~~~~~~~~q~a~~~~L~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~ 390 (434)
+.+.. ..++...+.+.....++..+++...+ ..+...++.....+.+.+.++..+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~ 322 (405)
T d1jf9a_ 243 QEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDL 322 (405)
T ss_dssp TTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTE
T ss_pred cccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCcc
Confidence 53321 11122235556666666666663221 24455555566667777778777533
Q ss_pred -eecC--CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 391 -VFPS--SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 391 -~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
...+ .++.+. +.++ +. +..++...| +++||.+..|+.+
T Consensus 323 ~~~~~~~r~~ivs-f~~~--~~-~~~~~~~~L-~~~gI~v~~G~~c 363 (405)
T d1jf9a_ 323 TLYGPQNRLGVIA-FNLG--KH-HAYDVGSFL-DNYGIAVRTGHHC 363 (405)
T ss_dssp EEESCTTCCSEEE-EEET--TC-CHHHHHHHH-HHTTEECEEECTT
T ss_pred cccCCcCcCcEEE-EEcC--CC-CHHHHHHHH-HHCCcEEEccchh
Confidence 3332 344443 3332 22 466676665 6779999887643
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.78 E-value=2.5e-18 Score=161.30 Aligned_cols=291 Identities=14% Similarity=0.078 Sum_probs=180.6
Q ss_pred eEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc
Q 013883 112 INLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI 191 (434)
Q Consensus 112 i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~ 191 (434)
.+|...++ .+++|.+.+++.++.......|++..+..++|+.++++++ .+++ +|++|+|+++++..++..+.
T Consensus 2 ~~f~nd~~-~g~~P~v~eAl~~~~~~~~~~y~~~~~~~~lr~~ia~~~g------~~~~-~v~~tsggtean~~a~~~~~ 73 (340)
T d1svva_ 2 YSFVNDYS-VGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLE------RPDA-DVHFISGGTQTNLIACSLAL 73 (340)
T ss_dssp EECSCSCS-SCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHT------CTTS-EEEEESCHHHHHHHHHHHHC
T ss_pred CCcccCCC-CCCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhC------CCcc-eEEEcCCHHHHHHHHHHHHh
Confidence 35644444 3567889999988776655677776667789999998887 5566 89999999999999999999
Q ss_pred CCCCeEEEcCCCchhHHHHHHH--cCCEEEEEEcCCCCCCCCHHHHHhhccc------CCcEEEecCCCCCcccCCCHHH
Q 013883 192 NPGDEVILFAPFYDSYEATLSM--AGAKIKCITLRPPDFAIPIEELKSTISK------NTRAILMNTPHNPTGKMFTREE 263 (434)
Q Consensus 192 ~~gd~Vlv~~p~y~~~~~~~~~--~G~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~i~~~~p~NPTG~~~~~e~ 263 (434)
.+++.+++..+.+..+...... .+.....+... ....+.+...++... ....++++.+.|.+|.+...++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (340)
T d1svva_ 74 RPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP--DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQE 151 (340)
T ss_dssp CTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT--TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHH
T ss_pred hhccccccccccceeeeecccccccceeeeecccc--cccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHH
Confidence 9999999999998877544333 33333333322 233343433333221 2234455555566777778899
Q ss_pred HHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhcc
Q 013883 264 LNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL 343 (434)
Q Consensus 264 l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~ 343 (434)
++.+.+.|++++.++++|++|......................+...+..|..+ +.+.++..................
T Consensus 152 ~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 229 (340)
T d1svva_ 152 LEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGG--MFGEALIILNDALKPNARHLIKQR 229 (340)
T ss_dssp HHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTC--SSCEEEEECSGGGCTTHHHHHHHT
T ss_pred hhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccc--cccccccccchhhhhhhhhhcccc
Confidence 999999999999999999999765433221111100001122344445555544 444566665554444333322222
Q ss_pred ccCC-chHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHh
Q 013883 344 TFAT-STPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKE 422 (434)
Q Consensus 344 ~~~~-~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 422 (434)
.... ......++...+.... ......++..++++.+.+.|+..|+.+..|....++++++ +.+.+.+|+++
T Consensus 230 ~~~~~~~~~~~aa~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~v~~~~-------~~~~~~~l~~~ 301 (340)
T d1svva_ 230 GALMAKGWLLGIQFEVLMKDN-LFFELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPIL-------ENTMIAELNND 301 (340)
T ss_dssp TCCCTTTHHHHHHHHHHTSTT-HHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEECBEE-------EHHHHHHHTTT
T ss_pred cCccchhhHHHHHHHHHhhhh-HHHHHHHHHHHHHhhhHHHHhcCCCeeecCCCceEEEEeC-------CHHHHHHHHHh
Confidence 2222 2222333333333323 2344566778888999999999999987655555677766 23566777665
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.77 E-value=7.3e-17 Score=156.84 Aligned_cols=280 Identities=16% Similarity=0.182 Sum_probs=187.3
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc-cCCCCeEEEcCC
Q 013883 124 PDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL-INPGDEVILFAP 202 (434)
Q Consensus 124 ~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vlv~~p 202 (434)
...-.+++.+.++.+...+....-..++++.++++++ .+ ..+.+++|+.|+.++++++ +++||+|+++..
T Consensus 12 ~~~~~~~~~~~l~~g~~~~~~g~~v~~fE~~~a~~~g--------~~-~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~ 82 (384)
T d1b9ha_ 12 DDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHG--------AA-HALAVTNGTHALELALQVMGVGPGTEVIVPAF 82 (384)
T ss_dssp CHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTT--------CS-EEEEESCHHHHHHHHHHHTTCCTTCEEEEESS
T ss_pred CHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHHC--------cC-eEEEeCCHHHHHHHHHHHcCCCCCCEEEEecc
Confidence 3455677888888764333333346788888888876 44 7888889999999999988 799999999999
Q ss_pred CchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcC
Q 013883 203 FYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDE 282 (434)
Q Consensus 203 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~De 282 (434)
+|......+...|++++.++.++.++.+|++.+++.+++++++|++ .+..|... ++++|.++|+++++++|+|.
T Consensus 83 t~~a~~~ai~~~g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk~i~~---~~~~g~~~---d~~~i~~~~~~~~i~lieD~ 156 (384)
T d1b9ha_ 83 TFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIMP---VHMAGLMA---DMDALAKISADTGVPLLQDA 156 (384)
T ss_dssp SCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECC---BCGGGCCC---CHHHHHHHHHHHTCCBCEEC
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccc---cccccccc---ccccchhhhhhhhhhhhhhh
Confidence 9999999999999999999998888999999999999999999875 45677665 56778899999999999999
Q ss_pred cCCcccc-CCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC-hhhHHHHHHHhhcc-----------------
Q 013883 283 VYDKLAF-EMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFL----------------- 343 (434)
Q Consensus 283 ay~~~~~-~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~----------------- 343 (434)
++..... .+. .+..+ ++-.++-.+.+|.++ .| ..|.++++ +++.+.++..+...
T Consensus 157 a~a~ga~~~g~--~~g~~---g~~~~~Sf~~~K~i~-~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~ 229 (384)
T d1b9ha_ 157 AHAHGARWQGK--RVGEL---DSIATFSFQNGKLMT-AG-EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGS 229 (384)
T ss_dssp TTCTTCEETTE--EGGGS---SSCEEEECCTTSSSC-SS-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCC
T ss_pred ceecccccCCE--ecCcc---cccceeccccccccc-cc-ccchhhhhhHHHHHHHHHHHhcCCCCcccccccccccccc
Confidence 9987542 222 22222 222233344578886 44 35766665 66767666655421
Q ss_pred ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeec--C---CeeE-EEeeecCCCCCCCHHHHH
Q 013883 344 TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVFP--S---SGTY-FVVVDHTPFGHETDIAFC 416 (434)
Q Consensus 344 ~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~---~~~~-~~~~~~~~~~~~~~~~~~ 416 (434)
.+..+.+....+...|+. +++..++-+++.+.+.+.|.++ ++.... . ...+ +..+.+.......-.++.
T Consensus 230 n~rms~l~Aaig~~qL~~----ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~ 305 (384)
T d1b9ha_ 230 NMRLNEFSASVLRAQLAR----LDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALV 305 (384)
T ss_dssp BCBCBHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHH
T ss_pred ccccccchhhhhhhhhhh----cccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceecccccccHHHHH
Confidence 123444544445555554 3444444455667777777765 443221 1 1111 222222111111123577
Q ss_pred HHHHHhcCeEEECC
Q 013883 417 EYLIKEVGVVAIPT 430 (434)
Q Consensus 417 ~~Ll~~~GV~v~pG 430 (434)
++|. +.||.+.+.
T Consensus 306 ~~L~-~~GI~~~~~ 318 (384)
T d1b9ha_ 306 DRLV-EAGLPAFAA 318 (384)
T ss_dssp HHHH-HTTCCEEEC
T ss_pred HHHH-HCCCCeeee
Confidence 7775 559987653
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.74 E-value=7.7e-16 Score=147.95 Aligned_cols=220 Identities=16% Similarity=0.223 Sum_probs=164.4
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH----HHHcC
Q 013883 140 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT----LSMAG 215 (434)
Q Consensus 140 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G 215 (434)
+.|+.. |.| -++.+.+.+....| .+ ..++.++++.|+..++.+++++||.|++++..|.+.... +..+|
T Consensus 55 ~~Y~R~-~nP-T~~~LE~~la~LEg----g~-~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~G 127 (397)
T d1y4ia1 55 YIYTRL-GNP-TTDALEKKLAVLER----GE-AGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFG 127 (397)
T ss_dssp SCCCTT-SCH-HHHHHHHHHHHHHT----CS-EEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTT
T ss_pred ceeeCC-CCH-HHHHHHHHHHHHhC----Cc-cceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCc
Confidence 456664 433 33344444443333 33 577788889999999999999999999999999986654 45689
Q ss_pred CEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCcc
Q 013883 216 AKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHIS 295 (434)
Q Consensus 216 ~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~ 295 (434)
+++..+... |++.+++++++++|+|++.+|.||+..+. ++++|+++|+++|+++|+|..+..-... .+
T Consensus 128 i~~~~vd~~------d~~~~~~~i~~~Tklv~~Esp~NP~l~v~---Di~~i~~iA~~~gi~~vvDnT~atP~~~---~P 195 (397)
T d1y4ia1 128 INVRFVDAG------KPEEIRAAMRPETKVVYIETPANPTLSLV---DIETVAGIAHQQGALLVVDNTFMSPYCQ---QP 195 (397)
T ss_dssp CEEEEECTT------SHHHHHHHCCTTEEEEEEESSCTTTCCCC---CHHHHHHHHHHTTCEEEEECTTTCTTTC---CG
T ss_pred eEeeccCCC------CHHHHHHhcCCCCcEEEecCCcccceeec---ccHHHHHHhhcCCceEEecCcccCcccC---cc
Confidence 999888654 68999999999999999999999999998 5778999999999999999998652211 11
Q ss_pred ccCCCCCCCceEEEccCChhhc-cccceeeeEEeChhhHHHHH--HHhhccccCCchHHHHHHHHHHhCChHHHHHHHHH
Q 013883 296 IASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIAPPHLTWGVR--QAHSFLTFATSTPMQWAATAALRAPETYYEELKRD 372 (434)
Q Consensus 296 ~~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~~~~~~~~l~--~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~ 372 (434)
+ ..+-.|++.|.+|.++ ....=.|.++++++.+.+++ ..+.......++...+.+..-|+. +.-..++
T Consensus 196 l-----~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~T----L~lRm~~ 266 (397)
T d1y4ia1 196 L-----QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT----LGIRMER 266 (397)
T ss_dssp G-----GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT----HHHHHHH
T ss_pred h-----hcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCc----HHHHHHH
Confidence 1 2234599999999994 34444688889988877644 444445667778888888888876 3444566
Q ss_pred HHHHHHHHHHHhhhC
Q 013883 373 YSAKKAILVEGLNAV 387 (434)
Q Consensus 373 ~~~~~~~l~~~L~~~ 387 (434)
..++...+.+.|++.
T Consensus 267 ~~~nA~~lA~~L~~h 281 (397)
T d1y4ia1 267 HCENALKIARFLEGH 281 (397)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC
Confidence 677778888888875
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.74 E-value=1.1e-15 Score=149.78 Aligned_cols=298 Identities=16% Similarity=0.181 Sum_probs=200.5
Q ss_pred eeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCC-CCC--CC------cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 111 AINLGQGFPNFDGPDFVKDAAIQAIRDGKNQY-ARG--HG------VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 111 ~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y-~~~--~G------~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
.|-|..+--+ +.|+.+.+++.+.+++..... ... .| +.+.|+.++++++ .++.+.|++++++++
T Consensus 23 ~iYld~a~~~-~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llg------a~~~~~i~~~~~tt~ 95 (408)
T d1t3ia_ 23 LVYLDNAATS-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFIN------ARSPREIVYTRNATE 95 (408)
T ss_dssp CEECBTTTCC-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTT------CSCGGGEEEESSHHH
T ss_pred eEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhC------CCCcccEEeecchHH
Confidence 4667665444 467778888888877632111 111 11 1245566666655 443237999999999
Q ss_pred HHHHHHHHc----cCCCCeEEEcCCCchhH----HHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCC
Q 013883 182 AIAATILGL----INPGDEVILFAPFYDSY----EATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHN 253 (434)
Q Consensus 182 ai~~~~~~l----~~~gd~Vlv~~p~y~~~----~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~N 253 (434)
++.+++..+ .++||+|++.+-.|+.. ....+..|.+++.+|.+. +...+.+.+++++++++++|.+...+|
T Consensus 96 ~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~-~~~~~~~~l~~~~~~~t~lv~i~~~~~ 174 (408)
T d1t3ia_ 96 AINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE-QESFDLEHFKTLLSEKTKLVTVVHISN 174 (408)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT-TSSBCHHHHHHHCCTTEEEEEEESBCT
T ss_pred HHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccc-cccccHHHhhhccCCCceEEEEecccc
Confidence 998887653 57899999998888864 344566799999998875 677899999999999999999999999
Q ss_pred CcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhH
Q 013883 254 PTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT 333 (434)
Q Consensus 254 PTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~ 333 (434)
-||..++. ++|.++|+++|+++|+|.++..... ...+..+ +-.+++.|..|.+|.+| +|+++.+++..
T Consensus 175 ~tG~~~p~---~~i~~~~~~~g~~~ivDa~q~~g~~---~id~~~~----~~D~~~~s~hK~~gp~G--~g~l~v~~~~~ 242 (408)
T d1t3ia_ 175 TLGCVNPA---EEIAQLAHQAGAKVLVDACQSAPHY---PLDVQLI----DCDWLVASGHKMCAPTG--IGFLYGKEEIL 242 (408)
T ss_dssp TTCBBCCH---HHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH----TCSEEEEEGGGTTSCTT--CEEEEECHHHH
T ss_pred cccccCcH---HHHhhhhhccCceeeeccceecccc---ccccccc----CCceEEeccccccCCCC--ccccccchhhh
Confidence 99999975 5588889999999999999876321 2222222 23488999999877445 89999998876
Q ss_pred HHHHHH---------------------hhccccCCchHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHhhhC-CCE
Q 013883 334 WGVRQA---------------------HSFLTFATSTPMQWAATAALRAPET-YYEELKRDYSAKKAILVEGLNAV-GFK 390 (434)
Q Consensus 334 ~~l~~~---------------------~~~~~~~~~~~~q~a~~~~L~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~ 390 (434)
...... .++...+.+.+...++..+++-..+ ..+++..+..+..+++.+.+++. ++.
T Consensus 243 ~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~ 322 (408)
T d1t3ia_ 243 EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLR 322 (408)
T ss_dssp HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred hcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCcccc
Confidence 543211 1222345555666666666653221 24555666667778888888776 455
Q ss_pred eecC------CeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCCC
Q 013883 391 VFPS------SGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVF 433 (434)
Q Consensus 391 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~F 433 (434)
+..+ .++... +.+. +. +..++...| +++||.+..|+.|
T Consensus 323 ~~~~~~~~~~~~~iv~-f~~~--~~-~~~~v~~~L-~~~gI~v~~G~~c 366 (408)
T d1t3ia_ 323 LYGPNPKHGDRAALAS-FNVA--GL-HASDVATMV-DQDGIAIRSGHHC 366 (408)
T ss_dssp EESCCGGGSCBCSEEE-EEET--TB-CHHHHHHHH-HTTTEECBCSCTT
T ss_pred ccCCCccccCcceEEE-EEeC--CC-CHHHHHHHH-hhCCcEEecCccc
Confidence 5422 233332 3332 22 466777766 6779999888643
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.73 E-value=7.7e-17 Score=159.80 Aligned_cols=300 Identities=15% Similarity=0.107 Sum_probs=193.5
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILG 189 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~ 189 (434)
-.|||-......+-. +++..++..+...|.....+.+|++.++++++ .+ .++++++|+.|+.+++++
T Consensus 43 v~iDl~sDs~t~am~----~~~~aa~~~GDd~Y~~dpt~~~lE~~~a~l~G--------~e-~al~~~SGt~An~~a~~~ 109 (456)
T d1c7ga_ 43 IYIDLLTDSGTNAMS----DKQWAGMMIGDEAYAGSENFYHLEKTVKELFG--------FK-HIVPTHQGRGAENLLSQL 109 (456)
T ss_dssp CSEECSCSSSCCCEE----HHHHHHTTSCCCCSSSCHHHHHHHHHHHHHHC--------CS-EEEEESSHHHHHHHHHHH
T ss_pred eeeEcccCCCcccch----HHHHHHHhccchhccCCchHHHHHHHHHHHhC--------CC-eEEECCCHHHHHHHHHHH
Confidence 568875543322212 22323344566678887778899999999987 45 788899999999999999
Q ss_pred ccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcC---------CCCCCCCHHHHHhhcccC----CcEEEecCCCCCc-
Q 013883 190 LINPGDEVILFAPFYDSYEATLSMAGAKIKCITLR---------PPDFAIPIEELKSTISKN----TRAILMNTPHNPT- 255 (434)
Q Consensus 190 l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~---------~~~~~~d~~~l~~~i~~~----~~~i~~~~p~NPT- 255 (434)
++++||+|+.... +......+...|+..+.+..+ +.++.+|++.++++|+++ +.++++.+++|+.
T Consensus 110 l~~~Gd~Vi~~~~-f~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~g 188 (456)
T d1c7ga_ 110 AIKPGQYVAGNMY-FTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAG 188 (456)
T ss_dssp HCCTTEEEEESSC-CHHHHHHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTT
T ss_pred hcCCCCeEecCcc-hHHHHHHHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccc
Confidence 9999999887665 444545567788887766542 124678999999999763 3477888999986
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccc--c------CCCCccccCCCC--CCCceEEEccCChhhccccceeee
Q 013883 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLA--F------EMDHISIASLPG--MYERTVTMNSLGKTFSLTGWKIGW 325 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~--~------~~~~~~~~~~~~--~~~~~i~i~S~SK~~g~~G~R~G~ 325 (434)
|.+++.+++++|.++|++||+.+++|+++.... + +....++..+.. ...-.++..|++|.++.++ .|+
T Consensus 189 G~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~--GG~ 266 (456)
T d1c7ga_ 189 GQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNI--GGF 266 (456)
T ss_dssp SBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSS--CEE
T ss_pred cceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccc--eeE
Confidence 678899999999999999999999999975321 0 001111111000 0011255679999997443 477
Q ss_pred EEeC-hhhHHHHHHHhhc----ccc-CCchHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCee
Q 013883 326 AIAP-PHLTWGVRQAHSF----LTF-ATSTPMQWAATAALRA--PETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGT 397 (434)
Q Consensus 326 ~~~~-~~~~~~l~~~~~~----~~~-~~~~~~q~a~~~~L~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 397 (434)
++.+ +++.++++..... ... +.+.....+++..|.. ..+++ ++..++.++|.+.|++.|+.+..+.++
T Consensus 267 i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l----~~r~~~~~~L~e~L~~~g~~vv~p~g~ 342 (456)
T d1c7ga_ 267 LCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYI----EHRVKQVRYLGDKLREAGVPIVEPTGG 342 (456)
T ss_dssp EEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHH----HHHHHHHHHHHHHHHHTTCCBCSSCCS
T ss_pred EEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHH----HHHHHHHHHHHHHHHhccCCcccCCCC
Confidence 7776 4555555443211 112 2222233333333332 22232 233455678889999999999888888
Q ss_pred EEEeeecCC------CCCCCHHHHHHHHHHhcCeEEEC
Q 013883 398 YFVVVDHTP------FGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 398 ~~~~~~~~~------~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
+.++++... .......+++.+|+.+.||...+
T Consensus 343 ~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~ 380 (456)
T d1c7ga_ 343 HAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSME 380 (456)
T ss_dssp SEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEE
T ss_pred cceeEechhhccCCCcccccHHHHHHHHHHHhCeeecc
Confidence 877765211 11113556777777788997543
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.73 E-value=2.3e-16 Score=151.52 Aligned_cols=217 Identities=20% Similarity=0.227 Sum_probs=162.7
Q ss_pred CCCCCCCCc---HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHH----
Q 013883 140 NQYARGHGV---PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLS---- 212 (434)
Q Consensus 140 ~~Y~~~~G~---~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~---- 212 (434)
+.|+.. |. ..|++.++++.+ .+ ..++++++..|+..++.+++++||.|++.+..|++....++
T Consensus 51 ~~Y~R~-~nPT~~~LE~~la~LEg--------~~-~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~ 120 (392)
T d1gc0a_ 51 HFYSRI-SNPTLNLLEARMASLEG--------GE-AGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIG 120 (392)
T ss_dssp -------CCHHHHHHHHHHHHHHT--------CS-EEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGG
T ss_pred ceecCC-CChHHHHHHHHHHHHhC--------Cc-ceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhc
Confidence 345554 32 356666666554 34 67778888999999999999999999999999999777654
Q ss_pred HcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC
Q 013883 213 MAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD 292 (434)
Q Consensus 213 ~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~ 292 (434)
.+|.++..++.. |++.+++++++++++|++.+|.|||..+. ++++|+++|+++|+++|+|..+..-.+.
T Consensus 121 ~~Gi~~~~~d~~------d~~~~~~ai~~~t~lv~~Esp~NP~l~v~---Di~~i~~ia~~~g~~~vvDnT~atP~~~-- 189 (392)
T d1gc0a_ 121 EFGVKLRHVDMA------DLQALEAAMTPATRVIYFESPANPNMHMA---DIAGVAKIARKHGATVVVDNTYCTPYLQ-- 189 (392)
T ss_dssp GGTCEEEEECTT------CHHHHHHHCCTTEEEEEEESSCTTTCCCC---CHHHHHHHHGGGTCEEEEECTTTHHHHC--
T ss_pred cCCcccccCCcc------CHHHHHHhCCCCCeEEEecccccceeeec---chHHHHHHHHhcCCEEEEecCccCcccc--
Confidence 469998887654 78999999999999999999999999998 5778999999999999999999743221
Q ss_pred CccccCCCCCCCceEEEccCChhhc-cccceeeeEEeChhhHHHHH--HHhhccccCCchHHHHHHHHHHhCChHHHHHH
Q 013883 293 HISIASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIAPPHLTWGVR--QAHSFLTFATSTPMQWAATAALRAPETYYEEL 369 (434)
Q Consensus 293 ~~~~~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~~~~~~~~l~--~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~ 369 (434)
.++ ..+-.+++.|.+|.++ -...-.|.++++.+.+.+++ ..+.......++...+.+..-|+. +...
T Consensus 190 -~Pl-----~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~T----L~lR 259 (392)
T d1gc0a_ 190 -RPL-----ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT----LNLR 259 (392)
T ss_dssp -CGG-----GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT----HHHH
T ss_pred -ChH-----HhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhcccc----HHHH
Confidence 111 1234589999999994 44456788899988877654 445445677788888888888886 3444
Q ss_pred HHHHHHHHHHHHHHhhhC
Q 013883 370 KRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~ 387 (434)
.++..++...+.+.|++.
T Consensus 260 m~~~~~nA~~lA~~L~~h 277 (392)
T d1gc0a_ 260 MDRHCANAQVLAEFLARQ 277 (392)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 566667777777888764
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.71 E-value=2.5e-16 Score=149.67 Aligned_cols=299 Identities=15% Similarity=0.116 Sum_probs=204.1
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCC-CC------CCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGK-NQ------YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~-~~------Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+.|+|-..++- .++.+++++...+.+.. .+ |...+-+.++.....+...+.++... - +|...+| +.|
T Consensus 24 ~~l~LiaSEN~--~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~--a-nVqp~SG-s~A 97 (405)
T d1kl1a_ 24 AKIELIASENF--VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH--A-NVQPHSG-AQA 97 (405)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSE--E-ECCCSSH-HHH
T ss_pred cCceEeccCCc--CCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCc--c-eeeccCc-hHH
Confidence 56787544322 24666666555443311 11 22222233444444455666666431 1 3444455 778
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHHHH-----HHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcc
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYEAT-----LSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTG 256 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~~~-----~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG 256 (434)
...++.++++|||+|+..++..++|... +.....+.+.++++++++.+|.|++++.+.. ++++|++-.-.+|--
T Consensus 98 n~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~r~ 177 (405)
T d1kl1a_ 98 NMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRI 177 (405)
T ss_dssp HHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCCSC
T ss_pred HHHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhhCcceEEecccccccc
Confidence 8889999999999999998877765422 3334568888999988899999999998876 899998865555543
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcCcCC-ccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHHH
Q 013883 257 KMFTREELNVIASLCIENDVLVFSDEVYD-KLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG 335 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~~~~iI~Deay~-~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~ 335 (434)
+ +++++.++|++.|.++++|-++. ++.-++-.++.... -.++..|..|+| .|.|.|.+..+.++.+.
T Consensus 178 --~---d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~-----aDvvt~tThKtl--rGPrgg~I~~~~~~~~~ 245 (405)
T d1kl1a_ 178 --I---DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY-----AHFVTTTTHKTL--RGPRGGMILCQEQFAKQ 245 (405)
T ss_dssp --C---CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT-----CSEEEEESSSTT--CCCSCEEEEECHHHHHH
T ss_pred --c---ChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhh-----hhheeccccccc--cCCCCceEEecchhHHH
Confidence 2 47889999999999999999985 44444433333221 236788999998 59999999999998888
Q ss_pred HHHHhhccccCCchHHHHHH-HHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecC-CeeEEEeeecCCCCCCCH
Q 013883 336 VRQAHSFLTFATSTPMQWAA-TAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFPS-SGTYFVVVDHTPFGHETD 412 (434)
Q Consensus 336 l~~~~~~~~~~~~~~~q~a~-~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~~~ 412 (434)
+.........+.+.....++ +.+|.+ .....++..++..++.+.|.+.|.+.|++++.. .-++.+++++.+.+. +
T Consensus 246 i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~ggTd~H~vlvdl~~~~~--~ 323 (405)
T d1kl1a_ 246 IDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQL--T 323 (405)
T ss_dssp HHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTC--C
T ss_pred HHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCccceeeccccccCC--c
Confidence 87766555555555544333 333433 123456777888899999999999999999753 346678899877665 3
Q ss_pred HHHHHHHHHhcCeEEE
Q 013883 413 IAFCEYLIKEVGVVAI 428 (434)
Q Consensus 413 ~~~~~~Ll~~~GV~v~ 428 (434)
-..++++|++.||.+.
T Consensus 324 g~~ae~~Le~agI~~N 339 (405)
T d1kl1a_ 324 GKTAEKVLDEVGITVN 339 (405)
T ss_dssp HHHHHHHHHHHTEECE
T ss_pred HHHHHHHHHHcCeEEc
Confidence 3556777789999887
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.4e-16 Score=153.82 Aligned_cols=298 Identities=15% Similarity=0.119 Sum_probs=189.8
Q ss_pred cCCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCC--CCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 108 KHGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKN--QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 108 ~~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~--~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+...|||..|+- .+. .+|.+.+++.+++++..+ .+....-..++.+ ++.+..+ .+ .+++++++++|
T Consensus 40 G~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~-~v~~~~sGseA 110 (404)
T d2byla1 40 GRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEE----YITKLFN----YH-KVLPMNTGVEA 110 (404)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTEEESSHHHHHH----HHHHHHT----CS-EEEEESSHHHH
T ss_pred CCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCcccccccchHHHHHH----hhhhccc----cc-ccccccCcccc
Confidence 335788876622 122 467899999998876321 1111111223333 3333322 34 79999999999
Q ss_pred HHHHHHHcc----------CCCCeEEEcCCCchhHHHHHHHc-------------CCEEEEEEcCCCCCCCCHHHHHhhc
Q 013883 183 IAATILGLI----------NPGDEVILFAPFYDSYEATLSMA-------------GAKIKCITLRPPDFAIPIEELKSTI 239 (434)
Q Consensus 183 i~~~~~~l~----------~~gd~Vlv~~p~y~~~~~~~~~~-------------G~~~~~v~~~~~~~~~d~~~l~~~i 239 (434)
+..+++... .....++...-.|++........ -..+..+|.+ |++.+++.+
T Consensus 111 ~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~------d~~~l~~~l 184 (404)
T d2byla1 111 GETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN------DLPALERAL 184 (404)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTT------CHHHHHHHH
T ss_pred chhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEeccc------CHHHHHHhc
Confidence 999987652 12245666666666422221111 1123444443 789999999
Q ss_pred ccC-CcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhc
Q 013883 240 SKN-TRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFS 317 (434)
Q Consensus 240 ~~~-~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g 317 (434)
..+ ..+|++.......|. .++++.+++|.++|++||+++|+||++.+|...|.......+.-.+| +.+++|.++
T Consensus 185 ~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~PD----i~~~gK~l~ 260 (404)
T d2byla1 185 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPD----IVLLGKALS 260 (404)
T ss_dssp TSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS----EEEECGGGG
T ss_pred CCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCCC----EEEECchhh
Confidence 764 445555433555664 56777899999999999999999999999877766665555544444 448999998
Q ss_pred ccc-ceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC---CEeec
Q 013883 318 LTG-WKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG---FKVFP 393 (434)
Q Consensus 318 ~~G-~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---~~~~~ 393 (434)
.| +.+|.+++++++.+.+.......+++.++.+..++.+.|+..++ +++.++.+++.+++.+.|+++. +.-+.
T Consensus 261 -gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~l~~l~~~~i~~vR 337 (404)
T d2byla1 261 -GGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEE--ENLAENADKLGIILRNELMKLPSDVVTAVR 337 (404)
T ss_dssp -TTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHTSCTTTEEEEE
T ss_pred -CCCccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHh--cCchhhhhHhhHHHHHHHHhhccccceeee
Confidence 66 79999999999887666555556888899999998888885321 2344555556666777666642 22223
Q ss_pred CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 394 SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
..|.| .-+.+.........+++++++++ ||++.|
T Consensus 338 g~Gl~-~~i~~~~~~~~~~~~~~~~l~~~-Gvl~~~ 371 (404)
T d2byla1 338 GKGLL-NAIVIKETKDWDAWKVCLRLRDN-GLLAKP 371 (404)
T ss_dssp EETTE-EEEEECCCSSCCHHHHHHHHHHT-TEECEE
T ss_pred ecccE-EEEEEecCCchhHHHHHHHHHhC-CeEEec
Confidence 33333 33344322223567788888765 999876
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.69 E-value=2.1e-16 Score=155.54 Aligned_cols=303 Identities=16% Similarity=0.115 Sum_probs=186.8
Q ss_pred cCCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...||+..|.- .+. .+|.+.+++++++........+ ..+...+++++....+. .+ .+++++++++|++
T Consensus 51 G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~---~~-~v~f~~sGseA~e 122 (427)
T d2gsaa_ 51 GNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAP----CALENVLAEMVNDAVPS---IE-MVRFVNSGTEACM 122 (427)
T ss_dssp SCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCSCCSSC----CHHHHHHHHHHHHHSTT---CS-EEEEESSHHHHHH
T ss_pred CCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcCccccc----hhHHHHHHHHHHhhCCc---cc-cccccCCcHHHHH
Confidence 346788866522 222 4788999999998764332222 24556677777655432 34 7899999999999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHH--------HHcCC------------EEEEEEcCCCCCCCCHHHHHhhccc-
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATL--------SMAGA------------KIKCITLRPPDFAIPIEELKSTISK- 241 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~--------~~~G~------------~~~~v~~~~~~~~~d~~~l~~~i~~- 241 (434)
.+++... ...++|+..+..|++..... ...+. +...++ .-|++.+++.+++
T Consensus 123 ~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~------~~~~~~le~~~~~~ 196 (427)
T d2gsaa_ 123 AVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP------YNDLEAVKALFAEN 196 (427)
T ss_dssp HHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC------TTCHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccC------cchHHHHHHHHHhC
Confidence 9988653 34467888888887642211 11111 122222 2379999998875
Q ss_pred --CCcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcc
Q 013883 242 --NTRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSL 318 (434)
Q Consensus 242 --~~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 318 (434)
+..+|++.....-.|. .++++.+++|.++|++||+++|+||++.+|. .|.......+.-.+| +..++|.+|
T Consensus 197 ~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r-~g~~~~~~~~gi~PD----i~~~gK~lg- 270 (427)
T d2gsaa_ 197 PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFR-IAYGGVQEKFGVTPD----LTTLGKIIG- 270 (427)
T ss_dssp TTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTT-TBTTCHHHHTTCCCS----EEEECGGGG-
T ss_pred CCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccce-ecccchHHhcCCCHH----HHhhhhccC-
Confidence 3445555433444565 5567779999999999999999999999884 444444444433344 566899998
Q ss_pred ccceeeeEEeChhhHHHHHHHh---hccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEee-
Q 013883 319 TGWKIGWAIAPPHLTWGVRQAH---SFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKVF- 392 (434)
Q Consensus 319 ~G~R~G~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~- 392 (434)
.|+.+|.+++.+++.+.+.... ...+++.++.+.+++.+.|+.. ++..+++.+.-...++.+.+..++.+....
T Consensus 271 gG~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v 350 (427)
T d2gsaa_ 271 GGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACG 350 (427)
T ss_dssp TTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCcceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHhhhhHHHHHHHHHHHHHHhhcCCCcEE
Confidence 8999999999999887664322 2246788888888888887742 233344444434444445444455554332
Q ss_pred cCCeeEEEeeecC-CC-C-----CCCH---HHHHHHHHHhcCeEEECCC
Q 013883 393 PSSGTYFVVVDHT-PF-G-----HETD---IAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 393 ~~~~~~~~~~~~~-~~-~-----~~~~---~~~~~~Ll~~~GV~v~pG~ 431 (434)
...++++.+.-.. +. . ..+. ..+...++++ ||++.|+.
T Consensus 351 ~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~-Gv~l~p~~ 398 (427)
T d2gsaa_ 351 GQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYLAPSQ 398 (427)
T ss_dssp EEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSST
T ss_pred cccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHC-CEEECCCC
Confidence 2234443222111 10 0 0011 2455667665 99999864
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.69 E-value=6.2e-17 Score=161.42 Aligned_cols=282 Identities=18% Similarity=0.086 Sum_probs=177.6
Q ss_pred HHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCC-------eEEEcCCCchh
Q 013883 134 AIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGD-------EVILFAPFYDS 206 (434)
Q Consensus 134 ~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd-------~Vlv~~p~y~~ 206 (434)
++..+...|....++.+|+++++++++ .+ .+++++++++|+..++..++++|+ .++.....|..
T Consensus 63 ~~~~gd~~y~~~~~~~~le~~~a~l~g--------~~-~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t 133 (465)
T d1ax4a_ 63 AMITGDEAYAGSRNYYDLKDKAKELFN--------YD-YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDT 133 (465)
T ss_dssp HHHTCCCCSSSCHHHHHHHHHHHHHHC--------CC-EEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHH
T ss_pred HHhhhhhhhccChHHHHHHHHHHHHHC--------CC-EEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhh
Confidence 344566679888888899999999886 45 799999999999999999876543 35566666677
Q ss_pred HHHHHHHcCCEEEEEEcC---------CCCCCCCHHHHHhhccc----CCcEEEecCCCCCcc-cCCCHHHHHHHHHHHH
Q 013883 207 YEATLSMAGAKIKCITLR---------PPDFAIPIEELKSTISK----NTRAILMNTPHNPTG-KMFTREELNVIASLCI 272 (434)
Q Consensus 207 ~~~~~~~~G~~~~~v~~~---------~~~~~~d~~~l~~~i~~----~~~~i~~~~p~NPTG-~~~~~e~l~~i~~la~ 272 (434)
+.......|..++.++.. +..+.+|++.+++++++ .+.++++..++|..| .+++.+++++|.++|+
T Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~ 213 (465)
T d1ax4a_ 134 TAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAK 213 (465)
T ss_dssp HHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHH
T ss_pred hHHHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHH
Confidence 777788889888766432 23577899999999965 234455555566554 5689999999999999
Q ss_pred HcCcEEEEcCcCCccccC------CC--CccccCCCCC--CCceEEEccCChhhccccceeeeEEeChhhH--HHHHHH-
Q 013883 273 ENDVLVFSDEVYDKLAFE------MD--HISIASLPGM--YERTVTMNSLGKTFSLTGWKIGWAIAPPHLT--WGVRQA- 339 (434)
Q Consensus 273 ~~~~~iI~Deay~~~~~~------~~--~~~~~~~~~~--~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~--~~l~~~- 339 (434)
+||+++|+|+++...... +. .......... .-..+...|.+|.. .|++.|+++.+.+.. ......
T Consensus 214 ~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~--~~~~~g~l~~~~~~~~~~~~~~~~ 291 (465)
T d1ax4a_ 214 QHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDP--LLNIGGLVAIRDNEEIFTLARQRC 291 (465)
T ss_dssp HHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTT--CCSSCEEEEESSCHHHHHHHHHHH
T ss_pred HcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCc--ccccceeEeecchHHHHHhhhccc
Confidence 999999999998643211 00 0000000000 00124444555554 577789998875432 211111
Q ss_pred -hh--ccc-cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeEEEeeecCCC--CC----
Q 013883 340 -HS--FLT-FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPF--GH---- 409 (434)
Q Consensus 340 -~~--~~~-~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~---- 409 (434)
.. ... .+.......++...+... ..+...++..++.+++.+.|++.|+++.++.+++.++++.... ..
T Consensus 292 ~~~~~~~~~~~~~~~~~~a~~~~~~e~--~~~~~~~~~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~ 369 (465)
T d1ax4a_ 292 VPMEGFVTYGGLAGRDMAAMVQGLEEG--TEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQ 369 (465)
T ss_dssp HHHTCSTTTTTCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGG
T ss_pred cccccCCCcchhhHHHHHHHhhhhHHh--hhHHHHHHHHHHHHHHHHHHHhhcCccccCCCcceeeeehhhhcCCCcccc
Confidence 11 111 122223333333333321 1122334445567889999999999988888887776654322 10
Q ss_pred CCHHHHHHHHHHhcCeEEE
Q 013883 410 ETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 410 ~~~~~~~~~Ll~~~GV~v~ 428 (434)
.....+..+++.+.||...
T Consensus 370 ~~~~~~~~~ll~~~GI~~~ 388 (465)
T d1ax4a_ 370 FPAQAVINALYLESGVRAV 388 (465)
T ss_dssp CHHHHHHHHHHHHHCEECE
T ss_pred chhHHHHHHHHHhcCceec
Confidence 0234566777777898754
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=6.3e-15 Score=141.21 Aligned_cols=217 Identities=15% Similarity=0.179 Sum_probs=159.9
Q ss_pred CCCCCCCCc---HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHH----H
Q 013883 140 NQYARGHGV---PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATL----S 212 (434)
Q Consensus 140 ~~Y~~~~G~---~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~ 212 (434)
+.|... |. ..|.+.++++-+ .+ ..+++++|..|+..++.+++++||.|++.+..|.+....+ .
T Consensus 42 ~~Y~R~-~nPt~~~le~~la~LEg--------g~-~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~ 111 (384)
T d1cs1a_ 42 HDYSRR-GNPTRDVVQRALAELEG--------GA-GAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAK 111 (384)
T ss_dssp CSBTTT-CCHHHHHHHHHHHHHHT--------CS-EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHT
T ss_pred CcccCC-CCHHHHHHHHHHHHHhC--------CC-ceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhc
Confidence 345553 33 345555655544 34 6778888899999999999999999999999998865544 3
Q ss_pred HcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCC
Q 013883 213 MAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMD 292 (434)
Q Consensus 213 ~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~ 292 (434)
..|..+..+... |.+.+++++++++++|++.+|.|||..+. ++++|+++|+++|+++|+|+.+....+.
T Consensus 112 ~~g~~~~~~d~~------d~~~~~~~~~~~t~~v~~EspsNP~l~v~---Di~~i~~ia~~~g~~~vVDNT~atP~~~-- 180 (384)
T d1cs1a_ 112 RGCYRVLFVDQG------DEQALRAALAEKPKLVLVESPSNPLLRVV---DIAKICHLAREVGAVSVVDNTFLSPALQ-- 180 (384)
T ss_dssp TTSCEEEEECTT------CHHHHHHHHHTCCSEEEEECSCTTTCCCC---CHHHHHHHHHHTTCEEEEECTTTCTTTC--
T ss_pred ccccccccccCC------CHHHHHhhccccccEEEEeccccccceec---cHHHHhhhhhhcCcEEEEeccccCcccc--
Confidence 457777666433 68999999999999999999999999999 5777999999999999999999542211
Q ss_pred CccccCCCCCCCceEEEccCChhhc-cccceeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHH
Q 013883 293 HISIASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELK 370 (434)
Q Consensus 293 ~~~~~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~ 370 (434)
..+ ..+-.|++.|.+|.++ -...=.|.++++ +++.+.++..+.......++...+.+..-|+. +.-..
T Consensus 181 ----~Pl--~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~T----L~lRm 250 (384)
T d1cs1a_ 181 ----NPL--ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT----LVPRM 250 (384)
T ss_dssp ----CGG--GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT----HHHHH
T ss_pred ----ccc--ccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccch----hHHHH
Confidence 111 1244589999999994 333345777775 55556677666666677788878887777776 34445
Q ss_pred HHHHHHHHHHHHHhhhC
Q 013883 371 RDYSAKKAILVEGLNAV 387 (434)
Q Consensus 371 ~~~~~~~~~l~~~L~~~ 387 (434)
++..++...+.+.|+..
T Consensus 251 ~~~~~nA~~lA~~L~~h 267 (384)
T d1cs1a_ 251 ELAQRNAQAIVKYLQTQ 267 (384)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcccC
Confidence 66677788888888765
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.69 E-value=3.2e-15 Score=143.18 Aligned_cols=207 Identities=15% Similarity=0.196 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHH----cCCEEEEEEcCC
Q 013883 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSM----AGAKIKCITLRP 225 (434)
Q Consensus 150 ~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~----~G~~~~~v~~~~ 225 (434)
.|.+.++++-+ .+ ..+++++|..|+. ++..++++||.|++..+.|.+....++. +|.++..+...
T Consensus 53 ~le~~la~LE~--------~~-~a~~fsSGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~- 121 (380)
T d1ibja_ 53 ALESLLAKLDK--------AD-RAFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT- 121 (380)
T ss_dssp HHHHHHHHHHT--------CS-EEEEESSHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-
T ss_pred HHHHHHHHHcC--------Cc-eEEehhhHHHHHH-HHHHhhCCCCEEEEEecccccccchhhhhhccccccccccCcc-
Confidence 45555555443 33 5667777789997 5667899999999999999998777654 68888777544
Q ss_pred CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCc
Q 013883 226 PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYER 305 (434)
Q Consensus 226 ~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~ 305 (434)
|.+.+++++++++++|++.+|.||+..+. ++++|+++|+++|+++|+|+.+..... ...+ ..+-
T Consensus 122 -----~~~~~~~ai~~~t~li~~EtpsNP~l~v~---Di~~i~~iA~~~g~~~vVDnT~atP~~------~~Pl--~~Ga 185 (380)
T d1ibja_ 122 -----KLDEVAAAIGPQTKLVWLESPTNPRQQIS---DIRKISEMAHAQGALVLVDNSIMSPVL------SRPL--ELGA 185 (380)
T ss_dssp -----SHHHHHHHCCSSEEEEEECSSCTTTCCCC---CHHHHHHHHHTTTCEEEEECTTTCTTT------CCGG--GTTC
T ss_pred -----hHHHHHHHhccCccEEEeccccccccccc---cHHHHHHHHHHcCCeEEeecccccccc------cccc--ccCC
Confidence 68999999999999999999999999999 567788999999999999999865321 1111 1234
Q ss_pred eEEEccCChhhc-cccceeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 013883 306 TVTMNSLGKTFS-LTGWKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEG 383 (434)
Q Consensus 306 ~i~i~S~SK~~g-~~G~R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~ 383 (434)
.+++.|.+|.++ -...-.|.++.+ .++.+.++..+.......++...+.+..-|+. +....++..++...+.+.
T Consensus 186 DiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T----l~lRm~~~~~nA~~lA~~ 261 (380)
T d1ibja_ 186 DIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT----MALRIEKQQENARKIAMY 261 (380)
T ss_dssp SEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHH
T ss_pred CEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchh----hhhhHHHHHHHHHHHHHH
Confidence 599999999995 223345776666 55667777777777777888888888888886 344456667777778888
Q ss_pred hhhC
Q 013883 384 LNAV 387 (434)
Q Consensus 384 L~~~ 387 (434)
|++.
T Consensus 262 L~~h 265 (380)
T d1ibja_ 262 LSSH 265 (380)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 8764
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.68 E-value=9.7e-16 Score=148.64 Aligned_cols=299 Identities=15% Similarity=0.113 Sum_probs=196.1
Q ss_pred cCCeeEeCCC--CCCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQG--FPNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g--~p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...||+..| ...+. .+|.+.+++.+++++... .+.... .+.+..+++.+...... ..+ .+.+++++++|++
T Consensus 36 G~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~-~~~~~~-~~~~~~la~~l~~~~~~--~~~-~v~f~~sGseA~e 110 (387)
T d1vefa1 36 GNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMA-MPQTLP-TPMRGEFYRTLTAILPP--ELN-RVFPVNSGTEANE 110 (387)
T ss_dssp SCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCC-CCTTSC-CHHHHHHHHHHHHTSCT--TEE-EEEEESSHHHHHH
T ss_pred CCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcc-cccccC-CchHHHHHHHhhhhccc--cce-eeccccCchHHHH
Confidence 3456788654 22333 468899999998886422 121112 35566666666544322 123 7999999999999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHHHc-C------------CEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEec
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLSMA-G------------AKIKCITLRPPDFAIPIEELKSTISKNTRAILMN 249 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-G------------~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~ 249 (434)
.+++... ...+.|+.....|++........ | .++..+|++ |++.+++.+.++..+|++.
T Consensus 111 ~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~------d~~~l~~~~~~~iAavi~E 184 (387)
T d1vefa1 111 AALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYN------DVEALKRAVDEETAAVILE 184 (387)
T ss_dssp HHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTT------CHHHHHHHCCTTEEEEEEC
T ss_pred HHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCC------CHHHHHHhcCCCeEEEEEE
Confidence 9987652 33468888888887754333222 1 234455544 7899999998888887775
Q ss_pred CCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEe
Q 013883 250 TPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA 328 (434)
Q Consensus 250 ~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~ 328 (434)
......|. .++++.+++|.++|++||+++|+||++.+|...|.......+.-.+| +.+++|.++ .|+.++.+++
T Consensus 185 Pi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PD----i~~~gK~l~-gG~~~~~~~~ 259 (387)
T d1vefa1 185 PVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD----ILTLAKALG-GGVPLGVAVM 259 (387)
T ss_dssp SEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS----EEEECGGGG-TTSSCEEEEE
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCc----eeeecccCC-CCcccccccc
Confidence 44555676 46778899999999999999999999999866665444444433444 667899998 8999999999
Q ss_pred ChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC---CEeecCCeeEEEeeecC
Q 013883 329 PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG---FKVFPSSGTYFVVVDHT 405 (434)
Q Consensus 329 ~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---~~~~~~~~~~~~~~~~~ 405 (434)
.+++.+.+.......+++.++.+..++.+.|+..++ .+..++.+++-+++.+.|+++. +.-+... |+++.+++.
T Consensus 260 ~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~--~~~~~~v~~~g~~l~~~L~~l~~~~v~~vrg~-Gl~~~ie~~ 336 (387)
T d1vefa1 260 REEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLER--TRLWERAAELGPWFMEKLRAIPSPKIREVRGM-GLMVGLELK 336 (387)
T ss_dssp EHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEE-TTEEEEEES
T ss_pred ceeeeeccccCCccccCCCCcchhhhcccchhhccc--ccccchHhhhhHHHHHHHHhcCCCceEEEeec-ceEEEEEEe
Confidence 888876665555556788899999998888875321 2344556666677777777652 2212222 334445553
Q ss_pred CCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 406 PFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 406 ~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
. +....+.+.+. +.|+.+.+
T Consensus 337 ~---~~~~~~~~~~~-~~g~l~~~ 356 (387)
T d1vefa1 337 E---KAAPYIARLEK-EHRVLALQ 356 (387)
T ss_dssp S---CSHHHHHHHHH-HHCEECEE
T ss_pred C---CchHHHHHHHH-HCCCeEEe
Confidence 2 12444555444 45877655
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.66 E-value=1.1e-14 Score=139.87 Aligned_cols=217 Identities=16% Similarity=0.195 Sum_probs=161.2
Q ss_pred CCCCCCCCc---HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHH----
Q 013883 140 NQYARGHGV---PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLS---- 212 (434)
Q Consensus 140 ~~Y~~~~G~---~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~---- 212 (434)
+.|+.. |. ..|.+.++++.+ .+ ..+++++|+.|+..++.+++++||.|++.+..|.+....++
T Consensus 59 ~~Y~R~-~nPt~~~LE~~la~LEg--------g~-~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~ 128 (398)
T d1qgna_ 59 FEYGRY-GNPTTVVLEEKISALEG--------AE-STLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILP 128 (398)
T ss_dssp CCBGGG-CCHHHHHHHHHHHHHHT--------CS-EEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGG
T ss_pred ceecCC-CChHHHHHHHHHHHHhC--------Cc-eEEEecCcchHHHHHHhhcccccccccccccccchhhhhhccccc
Confidence 456554 33 345666666543 34 67888888999999999999999999999999999766654
Q ss_pred HcCCEEEEEEcCCCCCCCCHH-HHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC
Q 013883 213 MAGAKIKCITLRPPDFAIPIE-ELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM 291 (434)
Q Consensus 213 ~~G~~~~~v~~~~~~~~~d~~-~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~ 291 (434)
.+|.++..+... +.+ ..++.+.+++++|++.+|.||+..+. ++++|+++|+++|+++|+|..+..-..
T Consensus 129 ~~gi~~~~~~~~------~~~~~~~~~~~~~t~~v~~EspsNP~l~v~---Di~~ia~ia~~~g~~~vVDnT~atP~~-- 197 (398)
T d1qgna_ 129 KMGITATVIDPA------DVGALELALNQKKVNLFFTESPTNPFLRCV---DIELVSKLCHEKGALVCIDGTFATPLN-- 197 (398)
T ss_dssp GGTCEEEEECSS------CHHHHHHHHHHSCEEEEEEESSCTTTCCCC---CHHHHHHHHHHTTCEEEEECTTTCTTT--
T ss_pred cccccccccccc------chhhhhhhhccccceEEEccCccccccccc---hHHHHHHHHhhcCCEEEecceeecccc--
Confidence 478888777533 334 44455677999999999999999998 577899999999999999999864221
Q ss_pred CCccccCCCCCCCceEEEccCChhhc-cccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHH
Q 013883 292 DHISIASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELK 370 (434)
Q Consensus 292 ~~~~~~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~ 370 (434)
...+ ..+-.|++.|.+|.++ ....-.|.++.+++++..++..+.......++...+.+..-|+. +.-..
T Consensus 198 ----~~Pl--~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T----L~lRm 267 (398)
T d1qgna_ 198 ----QKAL--ALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKT----LHLRV 267 (398)
T ss_dssp ----CCTT--TTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG----HHHHH
T ss_pred ----CCch--hhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhcccCCCcCCHHHHHHHHhcchH----HHHHH
Confidence 1112 2244589999999984 23334678888999988888887777777788878777777775 34445
Q ss_pred HHHHHHHHHHHHHhhhC
Q 013883 371 RDYSAKKAILVEGLNAV 387 (434)
Q Consensus 371 ~~~~~~~~~l~~~L~~~ 387 (434)
++..++...+.+.|++.
T Consensus 268 ~~~~~nA~~lA~~L~~h 284 (398)
T d1qgna_ 268 QQQNSTALRMAEILEAH 284 (398)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 66677777888888764
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=5.1e-15 Score=141.22 Aligned_cols=298 Identities=15% Similarity=0.074 Sum_probs=197.8
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcC-CCC------CCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDG-KNQ------YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-~~~------Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+.|+|-..++- .++.+++++...+.+. ..+ |...+-+.++.....+...+.+|... . +|.. .+++.|
T Consensus 27 ~~i~LiaSEN~--~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~--a-nVqp-~SGs~A 100 (416)
T d1dfoa_ 27 EHIELIASENY--TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADY--A-NVQP-HSGSQA 100 (416)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE--E-ECCC-SSHHHH
T ss_pred cCceEecCccc--CCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCc--c-eeec-ccCccH
Confidence 56777544322 2456666555444331 111 22222233444444455555566421 1 3444 455888
Q ss_pred HHHHHHHccCCCCeEEEcCCCchhHHHH-----HHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcc
Q 013883 183 IAATILGLINPGDEVILFAPFYDSYEAT-----LSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTG 256 (434)
Q Consensus 183 i~~~~~~l~~~gd~Vlv~~p~y~~~~~~-----~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG 256 (434)
...++.++++|||+|+..+..+.+|... +.....+.+.+++++ ++.+|.|++++.... ++|+|+...-.+|
T Consensus 101 N~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~-~~~IDyd~l~~~a~~~kPklIi~G~S~y~-- 177 (416)
T d1dfoa_ 101 NFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYS-- 177 (416)
T ss_dssp HHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCS-SSSBCHHHHHHHHHHHCCSEEEEECSSCC--
T ss_pred HHHHHHHhcCCCCeeeeccccccccccccccccccCceEEEEecccCC-ccCccHHHHHHHHHHhccceEEecccccc--
Confidence 8889999999999999999888776432 223345777777775 667999999998766 8999987654444
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcCcCCc-cccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC---hhh
Q 013883 257 KMFTREELNVIASLCIENDVLVFSDEVYDK-LAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP---PHL 332 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~~~~iI~Deay~~-~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~---~~~ 332 (434)
..+ +++++.++|++.|.++++|.++.. |.-++..++.... -.++..|..|+| .|.|.|++..+ +++
T Consensus 178 r~~---d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~-----aDvvt~tThKtl--rGPrggiI~~~~~~~~~ 247 (416)
T d1dfoa_ 178 GVV---DWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH-----AHVVTTTTHKTL--AGPRGGLILAKGGSEEL 247 (416)
T ss_dssp SCC---CHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT-----SSEEEEESSSTT--CCCSCEEEEESSCCHHH
T ss_pred ccc---CHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc-----cceeeeehhhcc--cCCCceEEEeccchHhH
Confidence 334 477889999999999999999863 4434433332221 238889999998 58999999986 466
Q ss_pred HHHHHHHhhccccCCchHHHHHH-HHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeec-CCeeEEEeeecCCCCC
Q 013883 333 TWGVRQAHSFLTFATSTPMQWAA-TAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFP-SSGTYFVVVDHTPFGH 409 (434)
Q Consensus 333 ~~~l~~~~~~~~~~~~~~~q~a~-~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~ 409 (434)
.+++.+.......+.+.....++ +.++.+ .....++..++..++.+.|.+.|.+.|++++. ...++.+++++.+.+.
T Consensus 248 ~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~ggTdnHlvlvdl~~~~~ 327 (416)
T d1dfoa_ 248 YKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNL 327 (416)
T ss_dssp HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTC
T ss_pred HHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCCCCCceeEEEecccCC
Confidence 66776665555555555554443 444443 33445777888899999999999999999974 3355678899877665
Q ss_pred CCHHHHHHHHHHhcCeEEE
Q 013883 410 ETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 410 ~~~~~~~~~Ll~~~GV~v~ 428 (434)
+. ..+++++++.||.+.
T Consensus 328 -~G-~~a~~~Le~~gI~~N 344 (416)
T d1dfoa_ 328 -TG-KEADAALGRANITVN 344 (416)
T ss_dssp -CH-HHHHHHHHHTTEECE
T ss_pred -CH-HHHHHHHHHcCeEEe
Confidence 34 555667788999875
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=1.7e-15 Score=149.04 Aligned_cols=314 Identities=11% Similarity=0.077 Sum_probs=191.5
Q ss_pred cCCeeEeCCC--CCCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQG--FPNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g--~p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...|||..| ...+. .+|.+.+++.++++...+.... ....+.+..+++.+.+...... .+ .+++++++++|+.
T Consensus 39 G~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~-~~~~~~~~~la~~l~~~~p~~~-~~-~v~f~~sGseA~e 115 (425)
T d1sffa_ 39 GREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQ-VLAYEPYLELCEIMNQKVPGDF-AK-KTLLVTTGSEAVE 115 (425)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTT-TEECHHHHHHHHHHHHHSSCSS-CE-EEEEESSHHHHHH
T ss_pred CCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCcccc-cccCcHHHHHHHHHHhhhhhcc-cc-eeeeeccccchhh
Confidence 3467888766 22333 4688889999988764321111 1123455667777766553221 23 6899999999999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHHH-cCC-------------EEEEEEcCCCCCCCC-------HHHHHhh-cc
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLSM-AGA-------------KIKCITLRPPDFAIP-------IEELKST-IS 240 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~G~-------------~~~~v~~~~~~~~~d-------~~~l~~~-i~ 240 (434)
.+++... ...++|+.....|++....... .|. .....++........ .+.+... ..
T Consensus 116 ~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (425)
T d1sffa_ 116 NAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAA 195 (425)
T ss_dssp HHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCC
T ss_pred hHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhccc
Confidence 9987653 3346788888888885544332 221 122222221111001 1111111 11
Q ss_pred c-CCcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcc
Q 013883 241 K-NTRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSL 318 (434)
Q Consensus 241 ~-~~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~ 318 (434)
. +..+|++...+...|. .++++.+++|.++|++||+++|+||++.++...|.......+.-.+| +.+++|.+|
T Consensus 196 ~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PD----i~~~gK~l~- 270 (425)
T d1sffa_ 196 PEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPD----LTTFAKSIA- 270 (425)
T ss_dssp GGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCS----EEEECGGGG-
T ss_pred ccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCcc----ceecccccC-
Confidence 2 3455665544555665 56788899999999999999999999999876666555555433444 666999998
Q ss_pred ccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEe-ecCC
Q 013883 319 TGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKV-FPSS 395 (434)
Q Consensus 319 ~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~ 395 (434)
.|+.+|.+++++++.+.+.......+|+.++++..++.+.|+.. ++.+++....-...++.+.+.+++.++.. +...
T Consensus 271 gG~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~ 350 (425)
T d1sffa_ 271 GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGL 350 (425)
T ss_dssp TSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEE
T ss_pred CCcceEEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEcc
Confidence 89999999999998876655555568889999999998888753 23344444444445555666666665533 2334
Q ss_pred eeEEEeeecCC---CCCCC---HHHHHHHHHHhcCeEEECCC
Q 013883 396 GTYFVVVDHTP---FGHET---DIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 396 ~~~~~~~~~~~---~~~~~---~~~~~~~Ll~~~GV~v~pG~ 431 (434)
|.++ .+.+.. ....+ ...+.++++++ ||++.++.
T Consensus 351 Gl~~-~i~f~~~~~~~~~~~~~~~~~~~~l~~~-Gvl~~~~g 390 (425)
T d1sffa_ 351 GAMI-AIELFEDGDHNKPDAKLTAEIVARARDK-GLILLSCG 390 (425)
T ss_dssp TTEE-EEEEBGGGCTTSBCHHHHHHHHHHHHHT-TEECEEES
T ss_pred ccEE-EEEEeccCccCCccHHHHHHHHHHHHHC-CCEEeccC
Confidence 4443 332211 11111 24566777765 99988753
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2e-15 Score=146.47 Aligned_cols=267 Identities=14% Similarity=0.140 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHH--HHHHcCCEEEEEEcCCC
Q 013883 149 PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA--TLSMAGAKIKCITLRPP 226 (434)
Q Consensus 149 ~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~--~~~~~G~~~~~v~~~~~ 226 (434)
.++.+.+.+.+.+..|.+ .+..|+++.|+++++++++..++.+||++++....+..... .....+..+..+..+.
T Consensus 51 ~~i~~ea~~~l~~llg~~--~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 127 (388)
T d1h0ca_ 51 YQIMDEIKEGIQYVFQTR--NPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDP- 127 (388)
T ss_dssp HHHHHHHHHHHHHHHTCC--CSEEEEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCT-
T ss_pred HHHHHHHHHHHHHHhCCC--CCcEEEEcCcHHHHHHHHHHHhhccCCceeeecccceeeeeccccccccccccccccCC-
Confidence 344444444555555542 22269999999999999999999999999999988886543 3455666666665553
Q ss_pred CCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCc
Q 013883 227 DFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYER 305 (434)
Q Consensus 227 ~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~ 305 (434)
...+|.+.+++.+.. +++++.+++.+|.||++.+ +++|.++|++||+++++|.++..... ...+.. .+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~p---i~~i~~~~~~~g~~~~vD~~qs~g~~---~~d~~~----~~~ 197 (388)
T d1h0ca_ 128 GGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQP---LDGFGELCHRYKCLLLVDSVASLGGT---PLYMDR----QGI 197 (388)
T ss_dssp TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHTTTCEEEEECTTTTTTS---CCCTTT----TTC
T ss_pred ccccchHHHHHHhccCCcceEEEeeeeeccccccC---HHHHHHHhhcccccceeccccccccc---cccccc----ccc
Confidence 567788888776654 8999999999999999985 56689999999999999999875321 112222 234
Q ss_pred eEEEccCChhhccccceeeeEEeChhhHHHHHHHh-----------------------hccccCCchHHHHHHHHHHhCC
Q 013883 306 TVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAH-----------------------SFLTFATSTPMQWAATAALRAP 362 (434)
Q Consensus 306 ~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~-----------------------~~~~~~~~~~~q~a~~~~L~~~ 362 (434)
.+++.|..|.++.++ .+|+++.+++.++.+.... +....+++.....++..++...
T Consensus 198 D~~~~s~~K~~~gp~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~ 276 (388)
T d1h0ca_ 198 DILYSGSQKALNAPP-GTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALI 276 (388)
T ss_dssp SEEEEESSSTTCCCT-TCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHH
T ss_pred ceecccccccccCCC-ceEEEeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHH
Confidence 478888899886332 4788888877765543110 0112234444455555555432
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCC----eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 363 -ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSS----GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 363 -~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+..++.+..+.++..+.+++.++..|+....++ ....+.+.+ +.+. +..++..+|++++||.+..|.
T Consensus 277 ~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~-p~~~-~~~~~~~~L~~~~gI~v~~G~ 348 (388)
T d1h0ca_ 277 AEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAV-PAGY-DWRDIVSYVIDHFDIEIMGGL 348 (388)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEEC-CTTC-CHHHHHHHHHHHHCEECEECC
T ss_pred HHhccccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEEC-CCCC-CHHHHHHHHHhcCCEEEeCCc
Confidence 222566677778888888888888776554322 111333333 2233 578999999999999998874
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.64 E-value=1.2e-14 Score=139.33 Aligned_cols=265 Identities=15% Similarity=0.157 Sum_probs=173.9
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCC-cEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchh--HHHHHHHcCCEEEEEEcC
Q 013883 148 VPEFNSAIASRFKKDSGLEVDPEK-EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDS--YEATLSMAGAKIKCITLR 224 (434)
Q Consensus 148 ~~~lr~~ia~~l~~~~g~~~~~~~-~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~G~~~~~v~~~ 224 (434)
..+.|+.++++++ +.++. .+++++|+|+++.+++..+..+++.+++....+.. ........+.....+...
T Consensus 35 ~~~~r~~l~~l~~------~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (361)
T d1m32a_ 35 VEQIRQQLTALAT------ASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCG 108 (361)
T ss_dssp HHHHHHHHHHHHC------SSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHHHHhC------CCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhhhccccccccc
Confidence 4567777777776 43441 37788899999999999999998888887776554 334455667776666655
Q ss_pred CC-CCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCC
Q 013883 225 PP-DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMY 303 (434)
Q Consensus 225 ~~-~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~ 303 (434)
.. ....+.+.......++++++.+++.+|.||...+ +++|.++|++||+++++|.++..... ...+.. .
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~---i~~i~~~~~~~g~~~~vDa~qs~G~~---~~d~~~----~ 178 (361)
T d1m32a_ 109 EVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGI---PMDIAA----L 178 (361)
T ss_dssp TTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTS---CCCTTT----T
T ss_pred ccCCccchhhHHHHHhccCccceEEEeeecccccchh---hhhhhhhhcccceeeEeecccccCcc---cccccc----c
Confidence 32 2223344455556778999999999999999996 56688899999999999999986432 122222 2
Q ss_pred CceEEEccCChhhc-cccceeeeEEeChhhHHHH------------------HHHhhccccCCchHHHHHHHHHHhCC--
Q 013883 304 ERTVTMNSLGKTFS-LTGWKIGWAIAPPHLTWGV------------------RQAHSFLTFATSTPMQWAATAALRAP-- 362 (434)
Q Consensus 304 ~~~i~i~S~SK~~g-~~G~R~G~~~~~~~~~~~l------------------~~~~~~~~~~~~~~~q~a~~~~L~~~-- 362 (434)
+..+++.|..|.++ .+| +|+++.+++..+++ .........+++.....++..+|...
T Consensus 179 ~~D~~~~s~~K~l~gp~G--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 256 (361)
T d1m32a_ 179 HIDYLISSANKCIQGVPG--FAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAK 256 (361)
T ss_dssp TCSEEEEESSSTTCCCSS--EEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred ccceEEeeecccccCCCC--ceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHH
Confidence 45688889999884 346 88888876554322 11222234566666666666666542
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCC---eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 363 ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSS---GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+...+....+.+...+.+.+.++..|+....+. ....+.+.++.....+..+++..|.+ .||.+.+|.
T Consensus 257 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~~~~~~~~~~~l~~-~gi~i~~G~ 327 (361)
T d1m32a_ 257 EGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKE-QGFVIYPGK 327 (361)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHH-TTEECEECC
T ss_pred hcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCcEEEEECCCCCCCCHHHHHHHHHH-CCcEEECCC
Confidence 222344556667777888888888876654332 22233333322222246778887754 599998774
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=1.9e-14 Score=138.42 Aligned_cols=220 Identities=15% Similarity=0.185 Sum_probs=162.4
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHH----HcC
Q 013883 140 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLS----MAG 215 (434)
Q Consensus 140 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~G 215 (434)
..|... |.| -++.+.+.+....| .+ ..+++++|+.|+..++.+++++||.|++....|.+....++ ..|
T Consensus 50 ~~Y~R~-~nP-t~~~le~~la~LEg----~~-~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~G 122 (391)
T d1cl1a_ 50 LFYGRR-GTL-THFSLQQAMCELEG----GA-GCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLG 122 (391)
T ss_dssp CCCTTT-CCH-HHHHHHHHHHHHHT----CS-EEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGT
T ss_pred eEeECC-CCh-hHHHHHHHHHHHhC----Cc-cEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccc
Confidence 346664 433 33444444443333 34 68888888999999999999999999999999999776654 478
Q ss_pred CEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHH--cCcEEEEcCcCCccccCCCC
Q 013883 216 AKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIE--NDVLVFSDEVYDKLAFEMDH 293 (434)
Q Consensus 216 ~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~--~~~~iI~Deay~~~~~~~~~ 293 (434)
.++..+... |.+.+++++++++++|++.+|.||+..+.+ +++|+++|++ +|+++|+|+.+......
T Consensus 123 i~~~~~d~~------d~~~~~~~i~~~t~~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~g~~~vVDnT~atP~~~--- 190 (391)
T d1cl1a_ 123 VTTSWFDPL------IGADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLF--- 190 (391)
T ss_dssp CEEEEECTT------CGGGGGGTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSS---
T ss_pred cccccccCc------cccccccccccccceeeecccCcccccccc---cHHHHHHHHhccCCcEEEEeccccchhhh---
Confidence 888877543 678899999999999999999999999995 5567777765 59999999999653221
Q ss_pred ccccCCCCCCCceEEEccCChhhc-cccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHH
Q 013883 294 ISIASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRD 372 (434)
Q Consensus 294 ~~~~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~ 372 (434)
..+ ..+-.+++.|.+|.++ -...=.|.++.+++..+.+...........++...+.+..-|+. +....++
T Consensus 191 ---~Pl--~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~T----L~lR~~~ 261 (391)
T d1cl1a_ 191 ---KAL--DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRT----LGVRLRQ 261 (391)
T ss_dssp ---CGG--GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTT----HHHHHHH
T ss_pred ---ccc--ccccceEEeecchhccccccccccceeccccccccchhhhhcccccCCchhhhhhhccchh----HHHHHHH
Confidence 111 1234589999999995 22334688888999888888777767777777777777777776 3444556
Q ss_pred HHHHHHHHHHHhhhC
Q 013883 373 YSAKKAILVEGLNAV 387 (434)
Q Consensus 373 ~~~~~~~l~~~L~~~ 387 (434)
..++...+.+.|++.
T Consensus 262 ~~~nA~~vA~~L~~h 276 (391)
T d1cl1a_ 262 HHESSLKVAEWLAEH 276 (391)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 677777888888765
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.63 E-value=1.5e-14 Score=141.14 Aligned_cols=307 Identities=13% Similarity=0.071 Sum_probs=183.9
Q ss_pred cCCeeEeCCC--CCCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQG--FPNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g--~p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...|||..| ...+. .+|.+.+++.+++.+.... ......+..+.+++.+....+ .+ .+.+.++++++..
T Consensus 38 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~-~v~~~~sgs~a~~ 110 (404)
T d1z7da1 38 DKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTIC--SRAFFSVPLGICERYLTNLLG----YD-KVLMMNTGAEANE 110 (404)
T ss_dssp CCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCC--CTTSEEHHHHHHHHHHHHHHT----CS-EEEEESSHHHHHH
T ss_pred CCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCc--ccccchHHHHHHHHhhhhccc----cc-eeeeeccccchHH
Confidence 3356887665 22232 3678999998888763322 111222334445555554433 34 6888899999998
Q ss_pred HHHHHcc----------CCCCeEEEcCCCchhHHHHHHHcC-CEEE---EEEcCCC---CCCCCHHHHHhhcccCC-cEE
Q 013883 185 ATILGLI----------NPGDEVILFAPFYDSYEATLSMAG-AKIK---CITLRPP---DFAIPIEELKSTISKNT-RAI 246 (434)
Q Consensus 185 ~~~~~l~----------~~gd~Vlv~~p~y~~~~~~~~~~G-~~~~---~v~~~~~---~~~~d~~~l~~~i~~~~-~~i 246 (434)
.+++... .....++.....|++......... .... ..|..+. ...-+.+.++..+.++. .+|
T Consensus 111 ~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAav 190 (404)
T d1z7da1 111 TAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAF 190 (404)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTSTTEEEE
T ss_pred HHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHhcCCCEEEE
Confidence 8876542 122357777777776543322211 1100 0111000 01125777887776644 555
Q ss_pred EecCCCCCcccC-CCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhcccc-ceee
Q 013883 247 LMNTPHNPTGKM-FTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTG-WKIG 324 (434)
Q Consensus 247 ~~~~p~NPTG~~-~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G-~R~G 324 (434)
++...+...|.. ++++.+++|.++|++||+++|+||++.+|...|.......+.-.+| +.+++|.++ .| ..+|
T Consensus 191 i~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PD----ivt~gK~l~-gG~~p~~ 265 (404)
T d1z7da1 191 IVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPD----VILLGKALS-GGHYPIS 265 (404)
T ss_dssp EECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS----EEEECGGGG-TTSSCCE
T ss_pred EEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCC----EEEEccccc-CCCCCcc
Confidence 554446566765 4666699999999999999999999999876666665555544444 448999998 56 7999
Q ss_pred eEEeChhhHHHHHHHhhccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCEe-ecCCeeEEEe
Q 013883 325 WAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKV-FPSSGTYFVV 401 (434)
Q Consensus 325 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~~ 401 (434)
.+++++++.+.++......+++.++++..++.+.|+.. ++..+...+.-....+.+.+.+++.++.. +...|.| +.
T Consensus 266 ~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl~-~~ 344 (404)
T d1z7da1 266 AVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLL-CA 344 (404)
T ss_dssp EEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTE-EE
T ss_pred cccchHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhcCCCeEEEEeeCcE-EE
Confidence 99999999877766555668888999998988888742 23344444444445556666666665432 2333443 34
Q ss_pred eecCCCCCCCHHHHHHHHHHhcCeEEEC
Q 013883 402 VDHTPFGHETDIAFCEYLIKEVGVVAIP 429 (434)
Q Consensus 402 ~~~~~~~~~~~~~~~~~Ll~~~GV~v~p 429 (434)
+.+.... ....++..+|+++ ||++.|
T Consensus 345 i~~~~~~-~~~~~~~~~l~~~-Gl~~~~ 370 (404)
T d1z7da1 345 IEFKNEL-VNVLDICLKLKEN-GLITRD 370 (404)
T ss_dssp EEECTTT-CCHHHHHHHHHHT-TEECCE
T ss_pred EEEcCCc-ccHHHHHHHHHhC-CeEEec
Confidence 4443322 2456788888765 999876
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.63 E-value=4e-15 Score=146.77 Aligned_cols=258 Identities=16% Similarity=0.184 Sum_probs=164.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc--CCCCeEEEcCCCchhHHHHHHHcCCEEEEEEc--CCC
Q 013883 151 FNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI--NPGDEVILFAPFYDSYEATLSMAGAKIKCITL--RPP 226 (434)
Q Consensus 151 lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~--~~~ 226 (434)
+...+...+.+..|.+ .. ...+..|+++++.+++.+.. .+++.|+++.-.|+.+...+...|++++.|+. +++
T Consensus 114 ~~~~~~~~~~~~~g~~--~~-~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~ 190 (434)
T d2z67a1 114 LTNKILESFFKQLGLN--VH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGD 190 (434)
T ss_dssp HHHHHHHHHHHHTTCC--CE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETT
T ss_pred HHHHHHHHHHHhcCCC--cc-eeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCC
Confidence 3333444445555543 22 45666777777777777663 37899999999999999999999999988874 334
Q ss_pred CCCCCHHHHHhhccc-----CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccc-cCCCCc-cccCC
Q 013883 227 DFAIPIEELKSTISK-----NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLA-FEMDHI-SIASL 299 (434)
Q Consensus 227 ~~~~d~~~l~~~i~~-----~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~-~~~~~~-~~~~~ 299 (434)
++.+|+++|++++++ ++.+|++..|++++|.+.+ +++|+++|++||+++++|++|.... +.+... ...
T Consensus 191 ~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~-- 265 (434)
T d2z67a1 191 RVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAF-- 265 (434)
T ss_dssp EEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHH--
T ss_pred ccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhhccccccccc--
Confidence 578999999999964 5677888899999998864 7779999999999999999997543 111110 111
Q ss_pred CCCCCceEEEccCChhhccccceeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 013883 300 PGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKA 378 (434)
Q Consensus 300 ~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~ 378 (434)
...-.+++.|++|.++ .+...|++... +++++++...........+.....+....+. .+.+++..++..++.+
T Consensus 266 --~~~~D~~~~s~hK~l~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~--~~g~~~~~~~~~~~a~ 340 (434)
T d2z67a1 266 --KYRVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG--SKNYLELVKNQKNSKK 340 (434)
T ss_dssp --TSCCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred --cCCcceEEEcCccccc-cCCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHH--HhcchhHHHHHHHHHH
Confidence 1233477889999987 33445666554 5555555443322223333333333333333 3344555666666667
Q ss_pred HHHHHhhh----CCCEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 379 ILVEGLNA----VGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 379 ~l~~~L~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
++.+.|++ .|..+..........+.+. .+..++..+|.+ .||.
T Consensus 341 ~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~----~~~~~l~~~L~~-~gI~ 387 (434)
T d2z67a1 341 LLDELLNDLSKKTGGKFLDVESPIASCISVN----SDPVEIAAKLYN-LRVT 387 (434)
T ss_dssp HHHHHHHHHHHHSSCCBCCCCCSSEEEEECS----SCHHHHHHHHHH-TTEE
T ss_pred HHHHHHHHhhhhcCceecCCCCCceeeeecC----CCHHHHHHHHHH-cCCe
Confidence 77666655 3666654332222222222 156778887765 4885
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=1.2e-14 Score=140.69 Aligned_cols=263 Identities=11% Similarity=0.074 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHhhcCCC--CCCCCcEEEcCChHHHHHHHHHHcc---CCCCeEEEcCCCchhH--HHHHHHcCCEEEEEE
Q 013883 150 EFNSAIASRFKKDSGLE--VDPEKEVTVTSGCTEAIAATILGLI---NPGDEVILFAPFYDSY--EATLSMAGAKIKCIT 222 (434)
Q Consensus 150 ~lr~~ia~~l~~~~g~~--~~~~~~i~~t~G~~~ai~~~~~~l~---~~gd~Vlv~~p~y~~~--~~~~~~~G~~~~~v~ 222 (434)
++.+.+.+.+.+..+.. .+++ .|++|+|+++++++++..++ ++||+|++..-.++.. ...+...|..+..+.
T Consensus 36 ~~~~~~~~~~r~~~~~~~~~~~~-~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (382)
T d2bkwa1 36 SIFQRVLKNTRAVFKSAAASKSQ-PFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVR 114 (382)
T ss_dssp HHHHHHHHHHHHHTTCCGGGTCE-EEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHhhhcCCCCe-EEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhcccccccccccc
Confidence 33444455555555532 2344 79999999999999999986 6899999988777664 345667888888776
Q ss_pred cCCCCCCCCHHHHHhhccc-CCcEEEecCCCCCcccCCCHHHHHHHHHHHHH--cCcEEEEcCcCCccccCCCCccccCC
Q 013883 223 LRPPDFAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIE--NDVLVFSDEVYDKLAFEMDHISIASL 299 (434)
Q Consensus 223 ~~~~~~~~d~~~l~~~i~~-~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~--~~~~iI~Deay~~~~~~~~~~~~~~~ 299 (434)
..+.+...+.+.+++++.. +++++++++.+|.||...+.++ +.+.|++ +++++++|.++.... .+..+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~---~~~~~~~~~~~~~~~vDa~qs~g~---~pid~~~- 187 (382)
T d2bkwa1 115 PLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKA---ISQAIKQTSPETFFVVDAVCSIGC---EEFEFDE- 187 (382)
T ss_dssp CSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHH---HHHHHHHHCTTSEEEEECTTTTTT---SCCCTTT-
T ss_pred ccCCCCccchhHHHHHhhhccchheeeeeccccccccccchh---hhhhccccccceeeeeeccccccc---ccccccc-
Confidence 6554667788888877754 7899999999999999997666 4444544 469999999987632 1222222
Q ss_pred CCCCCceEEEccCChhh-ccccceeeeEEeChhhHHHHHHHh--------------------------hccccCCchHHH
Q 013883 300 PGMYERTVTMNSLGKTF-SLTGWKIGWAIAPPHLTWGVRQAH--------------------------SFLTFATSTPMQ 352 (434)
Q Consensus 300 ~~~~~~~i~i~S~SK~~-g~~G~R~G~~~~~~~~~~~l~~~~--------------------------~~~~~~~~~~~q 352 (434)
.+-.+++.|-.|.+ |.+| +|+++.+++.++++.... +...++++....
T Consensus 188 ---~giD~~~~s~~K~l~gP~G--~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i 262 (382)
T d2bkwa1 188 ---WGVDFALTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLI 262 (382)
T ss_dssp ---TTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHH
T ss_pred ---cCeeEEeecccccCcCCCc--hhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHH
Confidence 23457889999998 6666 899999988776542111 122345666666
Q ss_pred HHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHhhhC-CCEeec---CC--eeEEEeeecCCCCCCCHHHHHHHHHHhcCe
Q 013883 353 WAATAALRAP-ETYYEELKRDYSAKKAILVEGLNAV-GFKVFP---SS--GTYFVVVDHTPFGHETDIAFCEYLIKEVGV 425 (434)
Q Consensus 353 ~a~~~~L~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV 425 (434)
+++..+|+.. ++..+...++.++.++.+++.+.+. +..... .. ...++.+.+. ++.++.+.| +++||
T Consensus 263 ~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~-----~~~~~~~~L-~~~gi 336 (382)
T d2bkwa1 263 NSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVA-----DPPDVIAFL-KSHGV 336 (382)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECS-----CHHHHHHHH-HHTTE
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCC-----CHHHHHHHH-HHCCe
Confidence 7777777642 2335556667777788888887653 433322 11 1112223331 466777665 67799
Q ss_pred EEECCC
Q 013883 426 VAIPTS 431 (434)
Q Consensus 426 ~v~pG~ 431 (434)
.+.+|.
T Consensus 337 ~i~~G~ 342 (382)
T d2bkwa1 337 VIAGGI 342 (382)
T ss_dssp ECBCCC
T ss_pred EEECCC
Confidence 999884
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.62 E-value=1.1e-14 Score=137.39 Aligned_cols=208 Identities=20% Similarity=0.229 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH----HHHcCCEEEEEEcCC
Q 013883 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT----LSMAGAKIKCITLRP 225 (434)
Q Consensus 150 ~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~~~ 225 (434)
.|.+.++++.+ .+ ..+++++|+.|+..++.+++++||.|++.++.|.+.... +..+|+++..++..
T Consensus 2 aLE~~la~Leg--------~~-~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~- 71 (331)
T d1pffa_ 2 ALEGKIAKLEH--------AE-ACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA- 71 (331)
T ss_dssp HHHHHHHHHHT--------CS-EEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred HHHHHHHHHhC--------CC-eEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc-
Confidence 46777888765 44 677788889999999999999999999999999885544 56789999887655
Q ss_pred CCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHH-HHHcCcEEEEcCcCCccccCCCCccccCCCCCCC
Q 013883 226 PDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASL-CIENDVLVFSDEVYDKLAFEMDHISIASLPGMYE 304 (434)
Q Consensus 226 ~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~l-a~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~ 304 (434)
|++.+++++++++++|++.+|.||+..+.+.+ +++++ ++++|+++|+|..+.....- ..+ ..+
T Consensus 72 -----d~~~~~~~i~~~t~~i~~Es~~np~~~v~d~~---~~~~~~a~~~~~~~vVDnT~atp~~~------~pl--~~G 135 (331)
T d1pffa_ 72 -----VPGNIEKHLKPNTRIVYFETPANPTLKVIDIE---DAVKQARKQKDILVIVDNTFASPILT------NPL--DLG 135 (331)
T ss_dssp -----STTHHHHTCCTTEEEEEEESSCTTTCCCCCHH---HHHHHHTTSSSCEEEEECTTTHHHHC------CGG--GGT
T ss_pred -----chhhHhhhcccccceeeeecccccccccccch---hhhhhhhcccCceEEeeccccccccc------ccc--ccC
Confidence 68899999999999999999999999998654 45555 46789999999998753321 111 123
Q ss_pred ceEEEccCChhhc-cccceeeeEEeChhhHHHHHHH--hhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 013883 305 RTVTMNSLGKTFS-LTGWKIGWAIAPPHLTWGVRQA--HSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILV 381 (434)
Q Consensus 305 ~~i~i~S~SK~~g-~~G~R~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~ 381 (434)
-.+++.|.+|.++ ....-.|.++.+++...+.+.. +.......++...+.+..-|+. +....++..++...+.
T Consensus 136 aDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T----l~~Rm~~~~~nA~~lA 211 (331)
T d1pffa_ 136 VDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT----LDMRVKRAAENAQKVA 211 (331)
T ss_dssp CSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred CCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3589999999994 3334568888887776655432 2223445566666666666654 4445566677778888
Q ss_pred HHhhhC
Q 013883 382 EGLNAV 387 (434)
Q Consensus 382 ~~L~~~ 387 (434)
+.|++.
T Consensus 212 ~~L~~h 217 (331)
T d1pffa_ 212 EFLHEH 217 (331)
T ss_dssp HHHHHC
T ss_pred HhhhhC
Confidence 888765
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.61 E-value=1.2e-14 Score=143.62 Aligned_cols=267 Identities=12% Similarity=0.054 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH-HHHHHHHHHc---cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcC
Q 013883 149 PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT-EAIAATILGL---INPGDEVILFAPFYDSYEATLSMAGAKIKCITLR 224 (434)
Q Consensus 149 ~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~-~ai~~~~~~l---~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~ 224 (434)
..+...+.+++.+..|.+-.. ..++++|++ .++.+++.++ ..+++.|+++...|..+...+..+|++++.|+..
T Consensus 93 ~~le~~~~~~~~~l~g~~~~~--~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~ 170 (445)
T d3bc8a1 93 NKITNSLVLNVIKLAGVHSVA--SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENV 170 (445)
T ss_dssp HHHHHHHHHHHHHHHTCTTCC--EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCE
T ss_pred HHHHHHHHHHHHHHhCCCccc--CccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEee
Confidence 457777888888777865444 345555555 4555544444 4567899999999999999999999999888642
Q ss_pred --CCCCCCCHHHHHhhccc----CCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccC
Q 013883 225 --PPDFAIPIEELKSTISK----NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIAS 298 (434)
Q Consensus 225 --~~~~~~d~~~l~~~i~~----~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~ 298 (434)
.+++.+|+++|++++++ ++.+|+++.|+|++|.+. ++++|+++|++||+++++|++|..+...........
T Consensus 171 ~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~---~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~ 247 (445)
T d3bc8a1 171 LEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPD---RLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQG 247 (445)
T ss_dssp EETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCC---CHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHH
T ss_pred ccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeeh---hHHHHHHHHHHhCCcEEEEccchhhhhhccccchhc
Confidence 34688999999998854 577888899999999987 477799999999999999999986432111000000
Q ss_pred CCCCCCceEEEccCChhhccccceeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 013883 299 LPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKK 377 (434)
Q Consensus 299 ~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~ 377 (434)
. ...+-.++..|.+|.++.+ ...|+++.+ ....+.+...........+...+++....+. .+..+.......++.
T Consensus 248 ~-~~~~vd~~~~s~hK~~~~p-~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~ 323 (445)
T d3bc8a1 248 A-RVGRIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLG--CSGYRKLLKERKEMF 323 (445)
T ss_dssp H-HHSCCCEEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred c-CcCCcceEEecCccccccC-CCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHh--hhcchhhHHHHHHHH
Confidence 0 0112236788899988733 345666664 5555555444332233333333444433333 223344444445555
Q ss_pred HHHHHHhhh----CCCEeec-CCeeEEEeeecCC---CCCCCHHHHHHHHHHhcCe
Q 013883 378 AILVEGLNA----VGFKVFP-SSGTYFVVVDHTP---FGHETDIAFCEYLIKEVGV 425 (434)
Q Consensus 378 ~~l~~~L~~----~g~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~Ll~~~GV 425 (434)
+++.+.|++ .|..+.. +...+..++.+.. ....+..++...|.+ .||
T Consensus 324 ~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~gI 378 (445)
T d3bc8a1 324 VYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFT-RQV 378 (445)
T ss_dssp HHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCCCCHHHHHHHHHH-cCC
Confidence 555555543 3544432 2222233332221 122234456666654 476
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.61 E-value=2.7e-14 Score=137.77 Aligned_cols=301 Identities=16% Similarity=0.102 Sum_probs=185.6
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcC-CC------CCCCCCCcHHHHHHHHHHHHhhcCCCCCCCC--cEEEcCChH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDG-KN------QYARGHGVPEFNSAIASRFKKDSGLEVDPEK--EVTVTSGCT 180 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~-~~------~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~--~i~~t~G~~ 180 (434)
+.|+|-..++- .++.+++++...+.+- .. .|...+-+.++.....+...+.++.+... + +|..-+ ++
T Consensus 28 ~~l~LiaSEN~--~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~-w~vNVqp~S-Gs 103 (463)
T d2a7va1 28 RGLELIASENF--CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQ-WGVNVQPYS-GS 103 (463)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTT-EEEECCCSS-HH
T ss_pred cCeeEeccCCc--CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchh-ccCCccccc-cH
Confidence 45677544321 3556666554444331 11 12233335566666666677777754321 1 233334 57
Q ss_pred HHHHHHHHHccCCCCeEEEcCCCchhHHHH--------HHHcCC--EEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEec
Q 013883 181 EAIAATILGLINPGDEVILFAPFYDSYEAT--------LSMAGA--KIKCITLRPPDFAIPIEELKSTISK-NTRAILMN 249 (434)
Q Consensus 181 ~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~--------~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~ 249 (434)
.|..+++.++++|||+|+..++...+|... +...|. +...+.++++++.+|.|++++.... ++++|++-
T Consensus 104 ~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~kPklIi~G 183 (463)
T d2a7va1 104 PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAG 183 (463)
T ss_dssp HHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEEC
T ss_pred HHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcCCceEEec
Confidence 888889999999999999988887776422 222332 3444455666788999999998876 89999886
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCC-ccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEe
Q 013883 250 TPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYD-KLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA 328 (434)
Q Consensus 250 ~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~-~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~ 328 (434)
.-.+|-- + +++++.++|++.|.++++|.++. +|.-++-.++.... -.++..|..|+| .|.|.|.+.+
T Consensus 184 ~S~y~r~--~---d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~-----aDvvt~tTHKTl--rGPrgGiIl~ 251 (463)
T d2a7va1 184 TSAYARL--I---DYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-----ADIVTTTTHKTL--RGARSGLIFY 251 (463)
T ss_dssp CSSCCSC--C---CHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT-----CSEEEEESSGGG--CSCSCEEEEE
T ss_pred ccccccc--c---CHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhh-----hhhhhchhhhhh--cCCCceEEEE
Confidence 6556543 2 47788899999999999999985 44444444333222 237788999998 5999999998
Q ss_pred Ch---------------hhHHHHHHHhhccccCCchHHHHHH-HHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEe
Q 013883 329 PP---------------HLTWGVRQAHSFLTFATSTPMQWAA-TAALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKV 391 (434)
Q Consensus 329 ~~---------------~~~~~l~~~~~~~~~~~~~~~q~a~-~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 391 (434)
++ ++.+++...-.....+.+.....++ +.++.. .....++...+..++.+.|.+.|.+.|+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~v 331 (463)
T d2a7va1 252 RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSL 331 (463)
T ss_dssp ECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred cccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 75 5667777665544444455544333 333332 123456677888889999999999999998
Q ss_pred ec-CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 392 FP-SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 392 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
+. ...++.+++++.+.+. +. ..+++.|++.||.+.
T Consensus 332 v~ggTdnHlvlvdl~~~~~-~G-~~ae~~Le~~gI~~N 367 (463)
T d2a7va1 332 VSGGTDNHLVLVDLRPKGL-DG-ARAERVLELVSITAN 367 (463)
T ss_dssp GGGSCSSSEEEEECTTTTC-CH-HHHHHHHHHTTEECE
T ss_pred ecCCCCCceeeeeccccCC-CH-HHHHHHHHhccCccC
Confidence 74 3456788899877665 34 555666788999875
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.61 E-value=2.8e-14 Score=138.07 Aligned_cols=302 Identities=15% Similarity=0.099 Sum_probs=201.5
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCC-------CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCC-cEEEcCChHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGK-------NQYARGHGVPEFNSAIASRFKKDSGLEVDPEK-EVTVTSGCTE 181 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~-------~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~-~i~~t~G~~~ 181 (434)
..|+|-..++- .++.+++++...+.+-. ..|....-+.++.....+...+.++.+.+... +|.. .+++.
T Consensus 32 ~~l~LIaSEN~--~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp-~SGs~ 108 (470)
T d1rv3a_ 32 VGLELIASENF--ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQP-YSGSP 108 (470)
T ss_dssp SSEECCTTCCC--CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCC-SSHHH
T ss_pred cCceEecCCCc--CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccc-cCCcc
Confidence 56777544321 35566665544443311 11333333445665566666777775422210 2333 45588
Q ss_pred HHHHHHHHccCCCCeEEEcCCCchhHHHH----------HHHcCCEEEEEEcCCCCCCCCHHHHHhhccc-CCcEEEecC
Q 013883 182 AIAATILGLINPGDEVILFAPFYDSYEAT----------LSMAGAKIKCITLRPPDFAIPIEELKSTISK-NTRAILMNT 250 (434)
Q Consensus 182 ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~----------~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~i~~~~ 250 (434)
|..+++.++++|||+|+..+....+|... +.....+.+.++++++++.+|.|++++.... ++++|++-.
T Consensus 109 An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G~ 188 (470)
T d1rv3a_ 109 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGT 188 (470)
T ss_dssp HHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECC
T ss_pred HHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhhCcceEeech
Confidence 88889999999999999988766655321 2222357888999988899999999998876 899998865
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCC-ccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeC
Q 013883 251 PHNPTGKMFTREELNVIASLCIENDVLVFSDEVYD-KLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP 329 (434)
Q Consensus 251 p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~-~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~ 329 (434)
-.+|- .+ +++++.++|++.|.++++|-++. +|.-++..++.... -.++..|..|+| .|.|.|.+..+
T Consensus 189 S~y~r--~~---d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~-----aDvvt~tTHKtl--rGPrgGiI~~~ 256 (470)
T d1rv3a_ 189 SCYSR--NL---DYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEH-----CHVVTTTTHKTL--RGCRAGMIFYR 256 (470)
T ss_dssp SSCCS--CC---CHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGT-----CSEEEEESSGGG--CCCSCEEEEEE
T ss_pred hhccc--cC---CHHHHHHHHhccCCeEEecchhhhhhccccccCChhhe-----eeeeeeehhhhc--cCCcceEEEEc
Confidence 55553 23 47788889999999999999986 44444444433222 138889999998 59999999986
Q ss_pred h---------------hhHHHHHHHhhccccCCchHHHHHHH-HHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEee
Q 013883 330 P---------------HLTWGVRQAHSFLTFATSTPMQWAAT-AALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVF 392 (434)
Q Consensus 330 ~---------------~~~~~l~~~~~~~~~~~~~~~q~a~~-~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 392 (434)
+ ++.+++........-+.+.....++. .++.. .....++..++..++.+.|.+.|.+.|+++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~G~~v~ 336 (470)
T d1rv3a_ 257 RGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIV 336 (470)
T ss_dssp CSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEG
T ss_pred cccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCCceec
Confidence 5 36666766654444444445444333 34443 2334577788889999999999999999987
Q ss_pred c-CCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 393 P-SSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 393 ~-~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
. ...++.+++++.+.+. +. ..++++|++.||.+.
T Consensus 337 ~ggTdnHlvlvdl~~~g~-~g-~~ae~~Le~~gI~~N 371 (470)
T d1rv3a_ 337 TGGSDNHLILVDLRSKGT-DG-GRAEKVLEACSIACN 371 (470)
T ss_dssp GGSCSSSEEEEEGGGGTC-CH-HHHHHHHHHTTEECE
T ss_pred cCCCCCceEEEeecccCC-cH-HHHHHHHHHcCcEEC
Confidence 4 3456778888877665 34 456777788999875
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.60 E-value=2e-13 Score=131.52 Aligned_cols=275 Identities=14% Similarity=0.094 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHcc-CCC--CeEEEcC
Q 013883 125 DFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLI-NPG--DEVILFA 201 (434)
Q Consensus 125 ~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~-~~g--d~Vlv~~ 201 (434)
+.-.+++.+.++.+. |....-..+|++.++++++ .+ .++++++++.|+.+++.++- .+| |+|+++.
T Consensus 12 ~~~~~~v~~~l~~~~--~~~G~~v~~fE~~~~~~~g--------~k-~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~ 80 (371)
T d2fnua1 12 KEDKKAVLEVLNSKQ--LTQGKRSLLFEEALCEFLG--------VK-HALVFNSATSALLTLYRNFSEFSADRNEIITTP 80 (371)
T ss_dssp HHHHHHHHHHHTSSC--CSSSHHHHHHHHHHHHHHT--------CS-EEEEESCHHHHHHHHHHHSSCCCTTSCEEEECS
T ss_pred HHHHHHHHHHHcCCC--ccCCHHHHHHHHHHHHHHC--------cC-eEEEEecHHHHHHHHHHHhcccCCCCCeeeccc
Confidence 444567778887654 3332236788888888887 34 78888999999999999984 444 5899999
Q ss_pred CCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEc
Q 013883 202 PFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSD 281 (434)
Q Consensus 202 p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~D 281 (434)
-+|......+...|++++.++.++++ ..+.+.+++.+++++++|+++ +..|... ++++|.++|+++++++|+|
T Consensus 81 ~t~~a~~~ai~~~G~~pv~vDi~~~~-~~~~~~~~~~~~~~t~avi~v---h~~G~~~---~~~~i~~~~~~~~i~lIED 153 (371)
T d2fnua1 81 ISFVATANMLLESGYTPVFAGIKNDG-NIDELALEKLINERTKAIVSV---DYAGKSV---EVESVQKLCKKHSLSFLSD 153 (371)
T ss_dssp SSCTHHHHHHHHTTCEEEECCBCTTS-SBCGGGSGGGCCTTEEEEEEE---CGGGCCC---CHHHHHHHHHHHTCEEEEE
T ss_pred ccccccceeeeccCcccccccccccc-cccchhhhhhccchhhccccc---ccccccc---ccccccccccccchhhccc
Confidence 99999999999999999999988744 556688899999999999875 4578776 4566888999999999999
Q ss_pred CcCCccccCCCCccccCCCCCCCceEEEccC--ChhhccccceeeeEEeC-hhhHHHHHHHhhcc---------------
Q 013883 282 EVYDKLAFEMDHISIASLPGMYERTVTMNSL--GKTFSLTGWKIGWAIAP-PHLTWGVRQAHSFL--------------- 343 (434)
Q Consensus 282 eay~~~~~~~~~~~~~~~~~~~~~~i~i~S~--SK~~g~~G~R~G~~~~~-~~~~~~l~~~~~~~--------------- 343 (434)
.+++....-.+ .....+ ++ +.+.|| .|.++ .|. .|.++++ +++.+.++..+...
T Consensus 154 aaqa~Ga~~~~-~~~G~~---g~--~~~~Sf~~~K~l~-~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G 225 (371)
T d2fnua1 154 SSHALGSEYQN-KKVGGF---AL--ASVFSFHAIKPIT-TAE-GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIG 225 (371)
T ss_dssp CTTCTTCEETT-EETTSS---SS--EEEEECCTTSSSC-CSS-CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCC
T ss_pred hhhccCceecc-ccCCcc---cc--ccccccccccccc-ccc-ceEEEeechhhhhhccccccccccccccccccccccc
Confidence 99987542211 111221 22 445555 79987 443 6777775 67777777665432
Q ss_pred -ccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCC-CEeecC----CeeEEEe-eecCCCCCCCHHHHH
Q 013883 344 -TFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVG-FKVFPS----SGTYFVV-VDHTPFGHETDIAFC 416 (434)
Q Consensus 344 -~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~ 416 (434)
.+..+.+....+..-|+. +++..++-+++.+.+.+.|.+.. +....+ ...++.+ +.+.........++.
T Consensus 226 ~n~r~sel~Aaigl~qL~~----l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~ 301 (371)
T d2fnua1 226 HNFRLNEIQSALGLSQLKK----APFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLIL 301 (371)
T ss_dssp CBCCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHH
T ss_pred ccccccchhhhhhhhhhhh----ccchhhhhhhhhhhhcccccccccccccccccccccccccccccccccchhHHHHHH
Confidence 122344445555555554 33334444455666677777653 333221 1222111 111111111235677
Q ss_pred HHHHHhcCeEEECC
Q 013883 417 EYLIKEVGVVAIPT 430 (434)
Q Consensus 417 ~~Ll~~~GV~v~pG 430 (434)
+.|. +.||.+.+.
T Consensus 302 ~~L~-~~gI~~~~~ 314 (371)
T d2fnua1 302 ESLH-KRGILAQVH 314 (371)
T ss_dssp HHHH-HTTEECBCC
T ss_pred HHHH-HCCCCccee
Confidence 7775 559987653
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.59 E-value=5.3e-14 Score=134.37 Aligned_cols=261 Identities=16% Similarity=0.115 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchh--HHHHHHHcCCEEEEEEcCCC
Q 013883 149 PEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDS--YEATLSMAGAKIKCITLRPP 226 (434)
Q Consensus 149 ~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~G~~~~~v~~~~~ 226 (434)
.++.+.+.+.+++.++. +.+ .+++++|++.+++.++..++.+||+|++....+++ +...++..|.++..+....
T Consensus 32 ~~i~~~~~~~l~~ll~~--~~~-~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~~~- 107 (348)
T d1iuga_ 32 REVFLKARGLLREAFRT--EGE-VLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEAGLVVERLDYPY- 107 (348)
T ss_dssp HHHHHHHHHHHHHHHTC--SSE-EEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCT-
T ss_pred HHHHHHHHHHHHHHhCC--CCC-EEEEeCchHHHHHHHHHhcccccccceeecchHHHHHHHHHHHhcCcccccccccC-
Confidence 34444455555555553 344 78889999999999999999999999988877655 4566788999888888764
Q ss_pred CCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHc--CcEEEEcCcCCccccCCCCccccCCCCCCC
Q 013883 227 DFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIEN--DVLVFSDEVYDKLAFEMDHISIASLPGMYE 304 (434)
Q Consensus 227 ~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~--~~~iI~Deay~~~~~~~~~~~~~~~~~~~~ 304 (434)
+..++++. ....+++.+++++..+.||+..+.++ |.++|++| +.++++|.+.+.... ...+.. ..
T Consensus 108 g~~~~~~~---~~~~~~~~v~~~h~eTstG~~~~i~~---i~~~~~~~~~~~l~~vDavss~g~~---~i~~d~----~~ 174 (348)
T d1iuga_ 108 GDTPRPED---VAKEGYAGLLLVHSETSTGALADLPA---LARAFKEKNPEGLVGADMVTSLLVG---EVALEA----MG 174 (348)
T ss_dssp TCCCCTTT---SCCSSCSEEEEESEETTTTEECCHHH---HHHHHHHHCTTCEEEEECTTTBTTB---CCCSGG----GT
T ss_pred CCcccccc---ccccCCCeeEEEecchhhhhhccHHH---HHHHHHhhhccceeechhhhccccc---cccccc----cc
Confidence 23334332 33558899999999999999997555 67777776 588999998875321 122221 12
Q ss_pred ceEEEccCChhh-ccccceeeeEEeChhhHHHHH-------------H-HhhccccCCchHHHHHHHHHHhCChHHHHHH
Q 013883 305 RTVTMNSLGKTF-SLTGWKIGWAIAPPHLTWGVR-------------Q-AHSFLTFATSTPMQWAATAALRAPETYYEEL 369 (434)
Q Consensus 305 ~~i~i~S~SK~~-g~~G~R~G~~~~~~~~~~~l~-------------~-~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~ 369 (434)
-.+++.|--|.+ |.+| +|+++.+++.+++++ . ......++++....+++..+|+...+..++.
T Consensus 175 iD~~~~~sqK~l~gppG--~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~~~~~ 252 (348)
T d1iuga_ 175 VDAAASGSQKGLMCPPG--LGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEH 252 (348)
T ss_dssp CSEEEEESSSTTCCCSC--EEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHH
T ss_pred CCEEEeccccceecCCc--eeeeeechHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHHHhHH
Confidence 347888999999 8777 799999887765321 1 1123356777777888888886532223333
Q ss_pred HHHHHHHHHHHHHHhhhCCCEeecCCee-EEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 370 KRDYSAKKAILVEGLNAVGFKVFPSSGT-YFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
..+.+..++.+++.+++.|+...+..-. -...+.+ |.+. +..++...| +++||.+.+|.
T Consensus 253 ~~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~-P~g~-~~~~~~~~l-~~~gi~i~~G~ 312 (348)
T d1iuga_ 253 LALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYL-PEGV-PYARVKEAF-AQRGAVIAGGQ 312 (348)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEEC-CTTC-CHHHHHHHH-HTTTEECEECC
T ss_pred HHHHHHHHHHHhhhhhhhhhccChhhcCCeEEEEEC-CCCC-CHHHHHHHH-HHCCeEEEcCc
Confidence 3444445566667777778887654311 1223333 3344 567787766 56799999884
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.59 E-value=5.5e-13 Score=128.16 Aligned_cols=220 Identities=23% Similarity=0.261 Sum_probs=158.7
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH----HHHcC
Q 013883 140 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT----LSMAG 215 (434)
Q Consensus 140 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G 215 (434)
+.|+.. |.| -++++.+.+....| .+ ..++.+++..|+..++.+++.+||.|++.+..|.+.... +...|
T Consensus 51 ~~YsR~-~nP-T~~~le~~la~LEg----~~-~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g 123 (394)
T d1e5ea_ 51 YIYTRL-GNP-TVSNLEGKIAFLEK----TE-ACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFG 123 (394)
T ss_dssp CCBTTT-CCH-HHHHHHHHHHHHHT----CS-EEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTT
T ss_pred ceecCC-CCH-HHHHHHHHHHHHhC----Cc-ceeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccc
Confidence 456664 333 34444444444333 34 577778889999999999999999999999999875444 56689
Q ss_pred CEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHH-HcCcEEEEcCcCCccccCCCCc
Q 013883 216 AKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCI-ENDVLVFSDEVYDKLAFEMDHI 294 (434)
Q Consensus 216 ~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~-~~~~~iI~Deay~~~~~~~~~~ 294 (434)
+.+..+... |.+.+++++++++++|++.+|.||+..+.+ +++++++++ ++++++|+|..+..-...
T Consensus 124 i~~~~~d~~------d~~~~~~~i~~~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP~~~---- 190 (394)
T d1e5ea_ 124 IQVDFINTA------IPGEVKKHMKPNTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMIT---- 190 (394)
T ss_dssp CEEEEECTT------STTHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTC----
T ss_pred eeeeccCCC------CHHHHHHhhcccccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccCcccC----
Confidence 999888655 578899999999999999999999999985 555666555 568999999998653211
Q ss_pred cccCCCCCCCceEEEccCChhhc-cccceeeeEEeChhhHHHHHHH--hhccccCCchHHHHHHHHHHhCChHHHHHHHH
Q 013883 295 SIASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIAPPHLTWGVRQA--HSFLTFATSTPMQWAATAALRAPETYYEELKR 371 (434)
Q Consensus 295 ~~~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~ 371 (434)
..+ ..+-.|++.|.+|.++ -...-.|.++++++....++.. +.......++...+.+..-|+. +....+
T Consensus 191 --~Pl--~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~T----L~lRm~ 262 (394)
T d1e5ea_ 191 --NPV--DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLST----LNIRMK 262 (394)
T ss_dssp --CGG--GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT----HHHHHH
T ss_pred --Cch--hcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchh----HHHHHH
Confidence 111 1234599999999984 3444578888888887765543 2334555677777777777776 444556
Q ss_pred HHHHHHHHHHHHhhhC
Q 013883 372 DYSAKKAILVEGLNAV 387 (434)
Q Consensus 372 ~~~~~~~~l~~~L~~~ 387 (434)
+..++...+.+.|++.
T Consensus 263 r~~~nA~~lA~~L~~h 278 (394)
T d1e5ea_ 263 AESENAMKVAEYLKSH 278 (394)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhc
Confidence 6777888888888875
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.59 E-value=7.4e-14 Score=134.96 Aligned_cols=220 Identities=16% Similarity=0.151 Sum_probs=151.1
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHH----HHHcC
Q 013883 140 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT----LSMAG 215 (434)
Q Consensus 140 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~G 215 (434)
+.|+.. |.| -++.+.+.+....| .+ ..++++++..|+..++.+++++||.|++.+..|.+.... +...|
T Consensus 50 ~~YsR~-~nP-T~~~LE~~la~LE~----~~-~a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~g 122 (421)
T d2ctza1 50 NIYSRI-MNP-TVDVLEKRLAALEG----GK-AALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLG 122 (421)
T ss_dssp GSCBTT-BCH-HHHHHHHHHHHHHT----CS-EEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTT
T ss_pred ceecCC-CCH-HHHHHHHHHHHHhC----CC-eEEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhcc
Confidence 446654 332 33334444443333 33 577788889999999999999999999999999887665 45689
Q ss_pred CEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCc--cccCCCC
Q 013883 216 AKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDK--LAFEMDH 293 (434)
Q Consensus 216 ~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~--~~~~~~~ 293 (434)
.++..+.... +.+..++.+++++++|++.+|.|||..+. ++++|+++|+++|+++|+|+.+.. +..
T Consensus 123 i~~~~~d~~~-----~~~~~~~~~~~~t~li~~EtpsNP~l~v~---Di~~i~~iA~~~g~~~vvDnT~a~tP~~~---- 190 (421)
T d2ctza1 123 IEVRFTSREE-----RPEEFLALTDEKTRAWWVESIGNPALNIP---DLEALAQAAREKGVALIVDNTFGMGGYLL---- 190 (421)
T ss_dssp CEEEECCTTC-----CHHHHHHHCCTTEEEEEEESSCTTTCCCC---CHHHHHHHHHHHTCEEEEECGGGGGGTSC----
T ss_pred ccceeccccc-----CcchhccccCCCceEEEEcCCCcceeEec---chHHHHHHHHhcCCceEecccccccceec----
Confidence 8888764331 35667778889999999999999999998 677899999999999999999862 211
Q ss_pred ccccCCCCCCCceEEEccCChhhcc-ccceeeeEEeChhh-------------------------------HHHHH-HHh
Q 013883 294 ISIASLPGMYERTVTMNSLGKTFSL-TGWKIGWAIAPPHL-------------------------------TWGVR-QAH 340 (434)
Q Consensus 294 ~~~~~~~~~~~~~i~i~S~SK~~g~-~G~R~G~~~~~~~~-------------------------------~~~l~-~~~ 340 (434)
.+ + ..+-.|++.|.+|.++= ...=.|.++.+.+. +.+++ ...
T Consensus 191 ~P---l--~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (421)
T d2ctza1 191 RP---L--AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGL 265 (421)
T ss_dssp CG---G--GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHH
T ss_pred cc---c--ccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHH
Confidence 11 1 23445999999999952 33335677654321 11111 111
Q ss_pred hccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC
Q 013883 341 SFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 341 ~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (434)
+......++...+.+..-|+. +.-..++..++...+.+.|++.
T Consensus 266 ~~~G~~~sP~~a~l~~rgl~T----L~lRm~~~~~nA~~vA~~L~~h 308 (421)
T d2ctza1 266 RDQGQALGPFEAWVVLLGMET----LSLRAERHVENTLHLAHWLLEQ 308 (421)
T ss_dssp HHHCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhccCCCCHHHHHHHhcCCcc----hhhHHHHHHHHHHHHHhhhccC
Confidence 223456677777777777776 3444566677777788888765
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=2.5e-13 Score=133.08 Aligned_cols=309 Identities=13% Similarity=0.091 Sum_probs=188.5
Q ss_pred cCCeeEeCCCCC--CCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQGFP--NFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g~p--~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...|||..|.- .+. .+|.+.+++++++....+.-...... +....+++.+....+.. -+ .+++++++++|++
T Consensus 42 G~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~--~~-~v~f~~sGseA~e 117 (429)
T d1s0aa_ 42 GRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH-APAIELCRKLVAMTPQP--LE-CVFLADSGSVAVE 117 (429)
T ss_dssp SCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEEC-HHHHHHHHHHHHHSCTT--CC-EEEEESSHHHHHH
T ss_pred CCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCccc-hHHHHHHHHHHhhhccC--cc-eeeeccccccchh
Confidence 346789877632 333 47889999999887743211111122 22334455554444332 33 7999999999999
Q ss_pred HHHHHcc-------CCCCeEEEcCCCchhHHHHHHHc-C-------------CEEEEEEcCC--CCCCC---CHHHHHhh
Q 013883 185 ATILGLI-------NPGDEVILFAPFYDSYEATLSMA-G-------------AKIKCITLRP--PDFAI---PIEELKST 238 (434)
Q Consensus 185 ~~~~~l~-------~~gd~Vlv~~p~y~~~~~~~~~~-G-------------~~~~~v~~~~--~~~~~---d~~~l~~~ 238 (434)
.+++... .++.+|+.....|++........ + ......|... ..... +++.+++.
T Consensus 118 ~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (429)
T d1s0aa_ 118 VAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARL 197 (429)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHH
T ss_pred hhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhh
Confidence 8876553 23457888888887643332221 1 1222233221 11222 34455444
Q ss_pred ccc---CCcEEEecCC-CCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCC
Q 013883 239 ISK---NTRAILMNTP-HNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLG 313 (434)
Q Consensus 239 i~~---~~~~i~~~~p-~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~S 313 (434)
+.. +..+|++... ++-.|. .++++.+++|.++|++||+++|+||++.+|...|.......+.-.+| +.+++
T Consensus 198 ~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PD----i~~~g 273 (429)
T d1s0aa_ 198 MAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPD----ILCLG 273 (429)
T ss_dssp HHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS----EEEEC
T ss_pred hhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceeccc----ccccc
Confidence 432 4455555432 355555 56888999999999999999999999999976666555555544445 66789
Q ss_pred hhhccccceeeeEEeChhhHHHHHHHh-----hccccCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-
Q 013883 314 KTFSLTGWKIGWAIAPPHLTWGVRQAH-----SFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV- 387 (434)
Q Consensus 314 K~~g~~G~R~G~~~~~~~~~~~l~~~~-----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 387 (434)
|.++-.+..+|.+++++++.+.+.... ...+++.++.+.+++.+.|+.-++ +++.++.+++-+++++.|+++
T Consensus 274 K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~--~~~~~~~~~~g~~l~~~L~~l~ 351 (429)
T d1s0aa_ 274 KALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILES--GDWQQQVADIEVQLREQLAPAR 351 (429)
T ss_dssp GGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHGGGG
T ss_pred cccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhcccccccc--ccccchhhHHHHHHHHHHHHhc
Confidence 999734489999999999988765422 234788889998888888875211 223445555555666666543
Q ss_pred --C-CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 388 --G-FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 388 --g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
. +.-+...|. ++-+++... .+...+...++++ ||++.|.
T Consensus 352 ~~~~v~~vrg~Gl-~~~~e~~~~--~~~~~~~~~~~~~-Gl~~~~~ 393 (429)
T d1s0aa_ 352 DAEMVADVRVLGA-IGVVETTHP--VNMAALQKFFVEQ-GVWIRPF 393 (429)
T ss_dssp GCTTEEEEEEETT-EEEEEESSC--BCHHHHHHHHHHT-TEECCCB
T ss_pred cCCceEEEeeccc-EEEEEecCc--ccHHHHHHHHHHC-CcEEEec
Confidence 2 222233343 444444321 2466788888765 9998774
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=3.3e-13 Score=132.99 Aligned_cols=312 Identities=13% Similarity=0.017 Sum_probs=200.2
Q ss_pred eeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCC--CcEEEcCChHHHHHHHHH
Q 013883 111 AINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPE--KEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 111 ~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~--~~i~~t~G~~~ai~~~~~ 188 (434)
.+||......+. ++.+.+.+.+.+..+...+.......++...+.+++.+.+|.+-... ..=.+|+|+++|+.+++.
T Consensus 55 ~~n~asf~~t~~-~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~ 133 (450)
T d1pmma_ 55 RQNLATFCQTWD-DENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGM 133 (450)
T ss_dssp GGBCSCCSCCCC-CHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHH
T ss_pred cccccccccCCC-CHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHH
Confidence 356665544333 45666666666655433332222346888999999998888753221 124789999999988776
Q ss_pred Hcc------------CCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcc
Q 013883 189 GLI------------NPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTG 256 (434)
Q Consensus 189 ~l~------------~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG 256 (434)
+.. .....+++....+..+...++.+|++++.||.+++++.+|++.|++++++++.+|+.+.+++.||
T Consensus 134 aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG 213 (450)
T d1pmma_ 134 AMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTG 213 (450)
T ss_dssp HHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTC
T ss_pred HHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeecCCCCcCcHHHHHHHhhhCceEEEeeeeeccCC
Confidence 542 12235788888999999999999999999999877799999999999999999999999999999
Q ss_pred cCCCHHHHHHHHH---HHHHcCcEEEEcCcCCccc--cCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh
Q 013883 257 KMFTREELNVIAS---LCIENDVLVFSDEVYDKLA--FEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH 331 (434)
Q Consensus 257 ~~~~~e~l~~i~~---la~~~~~~iI~Deay~~~~--~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~ 331 (434)
.+-+.+++..|++ +|+++|+|+.+|.||.++. +..... ....+...-..+..|..|.++ ....+||++.+..
T Consensus 214 ~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~--~~~~~~~~aDSi~~s~HK~~~-~p~g~g~l~~r~~ 290 (450)
T d1pmma_ 214 NYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDI--VWDFRLPRVKSISASGHKFGL-APLGCGWVIWRDE 290 (450)
T ss_dssp BBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTC--CCSTTSTTEEEEEEETTTTTC-CCSSCEEEEESSG
T ss_pred CccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhh--hhhhcccceeEeecChhhccC-CCCCeeEEEecCh
Confidence 9998887666654 4678999999999998764 221111 111122234467779999765 4455899998643
Q ss_pred h-HHH-HHHH-----hhc--cc--cCCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhC-CCEeecC---C
Q 013883 332 L-TWG-VRQA-----HSF--LT--FATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAV-GFKVFPS---S 395 (434)
Q Consensus 332 ~-~~~-l~~~-----~~~--~~--~~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~---~ 395 (434)
- ... +... ... .+ ++-+......+...+.. ..+.+++..++..+..+++.+.|++. ++++..+ .
T Consensus 291 ~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~ 370 (450)
T d1pmma_ 291 EALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPD 370 (450)
T ss_dssp GGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTT
T ss_pred hhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCC
Confidence 2 111 0000 000 01 11122222222222332 35567888888899999999999987 4666532 1
Q ss_pred -eeEEEeeecCCC--CCCCHHHHHHHHHHhcCeEE
Q 013883 396 -GTYFVVVDHTPF--GHETDIAFCEYLIKEVGVVA 427 (434)
Q Consensus 396 -~~~~~~~~~~~~--~~~~~~~~~~~Ll~~~GV~v 427 (434)
+-..+.+++.+. ..-+..++..+|.+ .|..|
T Consensus 371 ~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~-~Gw~v 404 (450)
T d1pmma_ 371 EGIPAVCFKLKDGEDPGYTLYDLSERLRL-RGWQV 404 (450)
T ss_dssp TBSSEEEEEECTTCCCSSCHHHHHHHHHT-TTCBC
T ss_pred CceEEEEEecCCcccCCCCHHHHHHHHHH-cCCee
Confidence 111233333321 11245678887765 48544
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.55 E-value=3.1e-13 Score=130.29 Aligned_cols=231 Identities=14% Similarity=0.074 Sum_probs=156.3
Q ss_pred HHHHHHHHHcCCCC-CCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc-cCCCCeEEEcCCCch
Q 013883 128 KDAAIQAIRDGKNQ-YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL-INPGDEVILFAPFYD 205 (434)
Q Consensus 128 ~~~~~~~~~~~~~~-Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l-~~~gd~Vlv~~p~y~ 205 (434)
.+.+.+.++.+... +++ -..+|++.++++++ .+ ..+.++++|.|+.++++++ +++||+|+++.-+|.
T Consensus 4 ~~~~~~~l~~~~~~~~G~--~~~~fE~~~~~~~~--------~~-~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~ 72 (374)
T d1o69a_ 4 LKYIEEVFKSNYIAPLGE--FVNRFEQSVKDYSK--------SE-NALALNSATAALHLALRVAGVKQDDIVLASSFTFI 72 (374)
T ss_dssp HHHHHHHHHHTTTSCTTH--HHHHHHHHHHHHHC--------CS-EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCG
T ss_pred HHHHHHHHhcCCcCCCCH--HHHHHHHHHHHHHC--------cC-eEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchH
Confidence 35667777765321 223 25788888888886 34 7888899999999999998 789999999999999
Q ss_pred hHHHHHHHcCCEEEEEEcCCCCCCCCHH--HHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCc
Q 013883 206 SYEATLSMAGAKIKCITLRPPDFAIPIE--ELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEV 283 (434)
Q Consensus 206 ~~~~~~~~~G~~~~~v~~~~~~~~~d~~--~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Dea 283 (434)
.....+..+|++++.+.+++.....+.+ ..+..+..++++|+++ +..|... ++++|.++|+++|++||+|.+
T Consensus 73 a~~~~~~~~g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~~---~~~G~~~---d~~~i~~~~~~~~i~vIED~a 146 (374)
T d1o69a_ 73 ASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILT---HLYGNAA---KMDEIVEICKENDIVLIEDAA 146 (374)
T ss_dssp GGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEE---CGGGCCC---CHHHHHHHHHHTTCEEEEECT
T ss_pred hhHHHHhhccceeEecccccccccccccccccchhccccccccccc---ccccchh---hhHHHHHHhhccCcchhhhhh
Confidence 9999999999999999998644444444 3445667789999875 4467666 577788999999999999999
Q ss_pred CCccccCCCCccccCCCCCCCceEEEccC--ChhhccccceeeeEEe-ChhhHHHHHHHhhcc--------------ccC
Q 013883 284 YDKLAFEMDHISIASLPGMYERTVTMNSL--GKTFSLTGWKIGWAIA-PPHLTWGVRQAHSFL--------------TFA 346 (434)
Q Consensus 284 y~~~~~~~~~~~~~~~~~~~~~~i~i~S~--SK~~g~~G~R~G~~~~-~~~~~~~l~~~~~~~--------------~~~ 346 (434)
++....- ....+..+ + .+.+.|| +|.++ .|. .|.++. ++++.+.++..+... .+.
T Consensus 147 ~a~g~~~-~~~~~G~~---g--d~~~fSf~~~K~l~-tge-GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~r 218 (374)
T d1o69a_ 147 EALGSFY-KNKALGTF---G--EFGVYSYNGNKIIT-TSG-GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYR 218 (374)
T ss_dssp TCTTCEE-TTEETTSS---S--SEEEEECCTTSSSC-CSS-CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCB
T ss_pred hhhcceE-CCeecCCC---C--ceEEEeccCccccc-ccc-ceeehhhhHHHHHhhccccccccccccccccccCCcccc
Confidence 9875421 11122222 2 2556666 58887 443 466666 477777776665332 123
Q ss_pred CchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC
Q 013883 347 TSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 347 ~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (434)
.+.+...+...-|+..++ ..++-++..+.+.+.|.+.
T Consensus 219 m~ei~Aaig~~qL~~l~~----~i~~r~~i~~~y~~~L~~~ 255 (374)
T d1o69a_ 219 LSNVLGAIGVAQMEVLEQ----RVLKKREIYEWYKEFLGEY 255 (374)
T ss_dssp CCHHHHHHHHHHHTTHHH----HHHHHHHHHHHHHHHHTTT
T ss_pred ccchhhhhhHHHHhhhhh----hcchhHHHHHHHHhhcccc
Confidence 444555555555655333 3333344455666666554
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.53 E-value=6e-13 Score=127.96 Aligned_cols=267 Identities=17% Similarity=0.155 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhH--HHHHHHcCCEEEEEEcCCCC
Q 013883 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSY--EATLSMAGAKIKCITLRPPD 227 (434)
Q Consensus 150 ~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~G~~~~~v~~~~~~ 227 (434)
++.+.+.+.+.+..+.+ +.. .|++++|+++++++++..+..+|+.+++..-.+... .......+.....+.... +
T Consensus 51 ~i~~~~r~~l~~ll~~~-~~~-~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 127 (377)
T d1vjoa_ 51 ALMDEIQSLLRYVWQTE-NPL-TIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPW-G 127 (377)
T ss_dssp HHHHHHHHHHHHHHTCC-CSC-EEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-T
T ss_pred HHHHHHHHHHHHHhCCC-CCe-EEEEcCcHHHHHHHHHHhccccccccceeeechhhhhhhhhhhhhcccccccccCC-C
Confidence 44444444444444532 233 788889999999999999999999999887776653 344556677776666554 3
Q ss_pred CCCCHHHHHh-hcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCce
Q 013883 228 FAIPIEELKS-TISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERT 306 (434)
Q Consensus 228 ~~~d~~~l~~-~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~ 306 (434)
...+.+..+. ..+.+++++.+++.+|.||...+ +++|.++|+++|.++++|.++..... ...+.. .+-.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~---i~~i~~~~~~~g~~~~vDa~~~~g~~---~~~~~~----~~~d 197 (377)
T d1vjoa_ 128 EVFSLEELRTALETHRPAILALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTSLGGV---PIFLDA----WGVD 197 (377)
T ss_dssp CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTTTTS---CCCTTT----TTCS
T ss_pred CcccchhhhhhhhcCcceeeeeeeeeccceeeec---hhhhhhhhhhccceEEEecchhhhhh---hhcccc----cccc
Confidence 3344444444 44558899999889999999985 66689999999999999999975321 112222 2345
Q ss_pred EEEccCChhhccccceeeeEEeChhhHHHHHHHhh-------------------cccc-CCchHHHHHHHHHHhC-ChHH
Q 013883 307 VTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHS-------------------FLTF-ATSTPMQWAATAALRA-PETY 365 (434)
Q Consensus 307 i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~-------------------~~~~-~~~~~~q~a~~~~L~~-~~~~ 365 (434)
+++.|..|.++ .+..+|+++..++.++....... .... .++.....++..++.. ....
T Consensus 198 ~~~~s~~K~~~-gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 276 (377)
T d1vjoa_ 198 LAYSCSQKGLG-CSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEG 276 (377)
T ss_dssp EEECCSSSTTC-SCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHC
T ss_pred eeeeccccccc-CCCEEEEecchhhHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcC
Confidence 77888899875 33347888888777664432110 1112 2222222233233322 1233
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCEeecCC---eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 366 YEELKRDYSAKKAILVEGLNAVGFKVFPSS---GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
.+....+.+++.+.+++.+...++....+. ....+.+.+ +.+. ++.+++.+|++++||.+..|..
T Consensus 277 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs~~v~~~~~-p~~~-~~~~l~~~L~~~~gI~v~~G~~ 344 (377)
T d1vjoa_ 277 LANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCI-PDGV-DGKAVARRLLNEHNIEVGGGLG 344 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEEC-CTTC-CHHHHHHHHHHHHCEECEECCG
T ss_pred chHHHHHHHHHhhhhhhhhhccCceeecChHhcCCeEEEEEC-CCCC-CHHHHHHHHHhcCCEEEecCcc
Confidence 566677778888899999988876654321 122233333 2233 5789999998999999988753
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=5.5e-14 Score=139.79 Aligned_cols=281 Identities=16% Similarity=0.122 Sum_probs=171.9
Q ss_pred HHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCC---------eEEEcCCCch
Q 013883 135 IRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGD---------EVILFAPFYD 205 (434)
Q Consensus 135 ~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd---------~Vlv~~p~y~ 205 (434)
+..+...|.....+.+|+++++++++ .+ .+++++++++|+..++.+++++|| .+++....|.
T Consensus 63 ~~~gd~~Y~~~~~~~~le~~~a~l~G--------~~-~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~ 133 (467)
T d2v1pa1 63 MMRGDEAFSGSRSYYALAESVKNIFG--------YQ-YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFD 133 (467)
T ss_dssp TTSCCCCSSSCHHHHHHHHHHHHHTC--------CS-EEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCH
T ss_pred ccccchhhcCCchHHHHHHHHHHHHC--------CC-EEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEeccccc
Confidence 33455678877777889998888876 44 678888889999999998876554 3556666777
Q ss_pred hHHHHHHHcCCEEEEEEcCCC---------CCCCCHHHHHhhccc----CCcEEEecCCCCCc-ccCCCHHHHHHHHHHH
Q 013883 206 SYEATLSMAGAKIKCITLRPP---------DFAIPIEELKSTISK----NTRAILMNTPHNPT-GKMFTREELNVIASLC 271 (434)
Q Consensus 206 ~~~~~~~~~G~~~~~v~~~~~---------~~~~d~~~l~~~i~~----~~~~i~~~~p~NPT-G~~~~~e~l~~i~~la 271 (434)
.........|+.++.++.+.. ...+|++.+++.+++ .++++++...+|.. |.+++.+++++|.++|
T Consensus 134 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia 213 (467)
T d2v1pa1 134 TTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIA 213 (467)
T ss_dssp HHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHH
T ss_pred ccHHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHH
Confidence 777788889999988876531 356899999998864 45667777776654 6788999999999999
Q ss_pred HHcCcEEEEcCcCCcccc-C-------CCCccccCCCC--CCCceEEEccCChhhccccceeeeEEeChhhHHH-HHHHh
Q 013883 272 IENDVLVFSDEVYDKLAF-E-------MDHISIASLPG--MYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWG-VRQAH 340 (434)
Q Consensus 272 ~~~~~~iI~Deay~~~~~-~-------~~~~~~~~~~~--~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~-l~~~~ 340 (434)
++||+++|+|+++..... . .....+..... .....++..|.+|.++ |...|++..+.+.+.. .+..+
T Consensus 214 ~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~--~~~gg~i~~~~~~~~~~~~~~~ 291 (467)
T d2v1pa1 214 KKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAM--VPMGGLLCMKDDSFFDVYTECR 291 (467)
T ss_dssp HHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTC--CSSCEEEEECSGGGHHHHHHHH
T ss_pred HHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCC--CCCceeEEecchhhhhHHHhhc
Confidence 999999999999753210 0 00111110000 0112355667888776 4557888877654432 22211
Q ss_pred hc-------cc-cCCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCeeE-EEeee--cC--CC
Q 013883 341 SF-------LT-FATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTY-FVVVD--HT--PF 407 (434)
Q Consensus 341 ~~-------~~-~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~~~~--~~--~~ 407 (434)
.. .. .+.......++...+.... .++..++..++.+++.+.|.+.++.+.+..+.. ++... +. ..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 369 (467)
T d2v1pa1 292 TLCVVQEGFPTYGGLEGGAMERLAVGLYDGM--NLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPA 369 (467)
T ss_dssp HHHHHTTSSCCCCCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTTCCEEEECSSCEEEEHHHHSTTSCG
T ss_pred ccccccccCcchhhhHHHHHHHHHHHhHHhh--hHHHHHHHHHHHHHHHHHHHhcCCcccCCCccceeecchhhcCCcch
Confidence 11 11 1222333333333333211 122334445677888888888887765443322 22111 10 00
Q ss_pred CCCCHHHHHHHHHHhcCeEEE
Q 013883 408 GHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 408 ~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
.......++.+|+.++||...
T Consensus 370 ~~~~~~~~~~~ll~~~Gi~~~ 390 (467)
T d2v1pa1 370 DQFPAQALACELYKVAGIRAV 390 (467)
T ss_dssp GGCHHHHHHHHHHHHHCEECE
T ss_pred hhhhhHHHHHHHHHHcCCeee
Confidence 111244567777788888543
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=4.2e-13 Score=128.85 Aligned_cols=217 Identities=17% Similarity=0.197 Sum_probs=152.8
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHH----cC
Q 013883 140 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSM----AG 215 (434)
Q Consensus 140 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~----~G 215 (434)
+.|+.. |.| -++.+.+.+....| .+ ..+++++|..|+..+ ..++.+||.|++....|.+....+.. .|
T Consensus 47 y~YsR~-gnP-T~~~lE~~la~LE~----~~-~a~~~sSGmaAi~~~-l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~g 118 (393)
T d1n8pa_ 47 YEYSRS-QNP-NRENLERAVAALEN----AQ-YGLAFSSGSATTATI-LQSLPQGSHAVSIGDVYGGTHRYFTKVANAHG 118 (393)
T ss_dssp CCBTTT-CCH-HHHHHHHHHHHHTT----CS-EEEEESCHHHHHHHH-HHTSCSSCEEEEESSCCHHHHHHHHHTSTTTC
T ss_pred eeeeCC-CCh-HHHHHHHHHHHHhC----Cc-eEEEecCchhHHHhh-hhcccCCCeeeeeeeecccchhhhhhhhhccc
Confidence 456664 433 34445555554433 33 456666668888755 46778899999999999997766554 57
Q ss_pred CEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHH----HcCcEEEEcCcCCccccCC
Q 013883 216 AKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCI----ENDVLVFSDEVYDKLAFEM 291 (434)
Q Consensus 216 ~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~----~~~~~iI~Deay~~~~~~~ 291 (434)
.++..+. .+.+++++++++++++|++.+|.||+..+.+ +++|+++|+ ++|+++|+|..+......
T Consensus 119 i~~~~~~-------~~~~~~~~~i~~~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~atP~~~- 187 (393)
T d1n8pa_ 119 VETSFTN-------DLLNDLPQLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS- 187 (393)
T ss_dssp SCCEEES-------SHHHHHHHHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-
T ss_pred ceeEEee-------cchHHHHHHhhhhcceeEecCcchhhhhccc---hhhhhhhhhhhcccCCceEEEecCccCcccC-
Confidence 6666553 1467899999999999999999999999995 566777777 789999999998653211
Q ss_pred CCccccCCCCCCCceEEEccCChhhc-cccceeeeEEeC-hhhHHHHHHHhhccccCCchHHHHHHHHHHhCChHHHHHH
Q 013883 292 DHISIASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIAP-PHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEEL 369 (434)
Q Consensus 292 ~~~~~~~~~~~~~~~i~i~S~SK~~g-~~G~R~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~ 369 (434)
..+ ..+-.|++.|.+|.++ -...-.|.++.+ +++.+.++..+.......++...+.+..-|+. +...
T Consensus 188 -----~Pl--~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~T----l~lR 256 (393)
T d1n8pa_ 188 -----NPL--NFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT----LHLR 256 (393)
T ss_dssp -----CGG--GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT----HHHH
T ss_pred -----Cch--hhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCcc----hhhH
Confidence 111 1234599999999994 344567877655 56777788777766777788878888887776 3334
Q ss_pred HHHHHHHHHHHHHHhhh
Q 013883 370 KRDYSAKKAILVEGLNA 386 (434)
Q Consensus 370 ~~~~~~~~~~l~~~L~~ 386 (434)
.++..++...+.+.|+.
T Consensus 257 ~~~~~~nA~~lA~~L~~ 273 (393)
T d1n8pa_ 257 VRQAALSANKIAEFLAA 273 (393)
T ss_dssp HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45556666777777754
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.49 E-value=1.7e-12 Score=125.31 Aligned_cols=266 Identities=15% Similarity=0.179 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHH--HHHHHcCCEEEEEEcCCCC
Q 013883 150 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYE--ATLSMAGAKIKCITLRPPD 227 (434)
Q Consensus 150 ~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~--~~~~~~G~~~~~v~~~~~~ 227 (434)
++.+.+.+.+.+..+. +....|+++.|++.+++.++..++.+|++|++..-.+++.. ......+...+.+...+ .
T Consensus 50 ~i~~~~r~~L~~ll~~--~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 126 (388)
T d2ch1a1 50 RTMDEVKDGLRYIFQT--ENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPP-D 126 (388)
T ss_dssp HHHHHHHHHHHHHHTC--CCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-T
T ss_pred HHHHHHHHHHHHHhCC--CCCeEEEEcCcHHHHHHHHHHHhccccccccccccccccccchhhhhhhccccccccccc-c
Confidence 4444444444444454 23325777888999999999999999999999888776643 44667888888887775 4
Q ss_pred CCCCHHHHHhhcc-cCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCce
Q 013883 228 FAIPIEELKSTIS-KNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERT 306 (434)
Q Consensus 228 ~~~d~~~l~~~i~-~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~ 306 (434)
...+.+..++... .+++++.+++.+|.||...+. ++|.++|++++.++++|.++.... ....+.. .+-.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~---~~i~~~~~~~~~~~~vD~~ss~g~---~pid~~~----~~~d 196 (388)
T d2ch1a1 127 RPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPL---EGVGQICHQHDCLLIVDAVASLCG---VPFYMDK----WEID 196 (388)
T ss_dssp SCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC---TTHHHHHHHTTCEEEEECTTTBTT---BCCCTTT----TTCC
T ss_pred cccchhhhhhhhccCCcceeeeeecccccccccch---hhhcchhccccceeeeeeeecccc---cccchhc----cCce
Confidence 4556666666554 488999999999999999865 457888999999999999998642 1122221 2445
Q ss_pred EEEccCChhhc-cccceeeeEEeChhhHHHHHHHhh-----------------------ccccCCchHHHHHHHHHHhCC
Q 013883 307 VTMNSLGKTFS-LTGWKIGWAIAPPHLTWGVRQAHS-----------------------FLTFATSTPMQWAATAALRAP 362 (434)
Q Consensus 307 i~i~S~SK~~g-~~G~R~G~~~~~~~~~~~l~~~~~-----------------------~~~~~~~~~~q~a~~~~L~~~ 362 (434)
+++.|-.|.++ .+| +|+++.+++.++....... .....++.....++..+++..
T Consensus 197 ~~~~s~~K~~~gp~G--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~ 274 (388)
T d2ch1a1 197 AVYTGAQKVLGAPPG--ITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQI 274 (388)
T ss_dssp EEECCCC-CCCCCSS--CEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred EEEEccccccCCCCe--EEEEeccHHHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHH
Confidence 77888889884 344 7888888877664432110 112334444444555555431
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCC----eeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECCCC
Q 013883 363 -ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSS----GTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSV 432 (434)
Q Consensus 363 -~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~~ 432 (434)
.........+.+......+..+...++...... ....+.+.++ .+. ++.++...|++++||.+.+|..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p-~g~-~~~~l~~~l~~~~gI~v~~G~~ 347 (388)
T d2ch1a1 275 AEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIP-KGV-DWWKVSQYAMNNFSLEVQGGLG 347 (388)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECC-TTC-CHHHHHHHHHHHHCBCCBCCCG
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECC-CCC-CHHHHHHHHhhcCCEEEeCCCc
Confidence 112233334444444445555555444333221 2223334442 233 5778999998889999998753
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.49 E-value=9.1e-13 Score=129.40 Aligned_cols=307 Identities=10% Similarity=0.015 Sum_probs=182.5
Q ss_pred cCCeeEeCCC--CCCCC-CcHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHH
Q 013883 108 KHGAINLGQG--FPNFD-GPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIA 184 (434)
Q Consensus 108 ~~~~i~l~~g--~p~~~-~~~~v~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~ 184 (434)
+...||+..| ...+. .+|.+.+++.+++++..+.... ...+.+..+++.|.+..... .+ .+++++++++|++
T Consensus 40 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~--~~~~~~~~la~~L~~~~~~~--~~-~v~f~~sGseA~e 114 (431)
T d1zoda1 40 GRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSE--MLSRPVVDLATRLANITPPG--LD-RALLLSTGAESNE 114 (431)
T ss_dssp CCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTT--CCCHHHHHHHHHHHHHSCTT--CC-EEEEESCHHHHHH
T ss_pred CCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccccccc--cccHHHHHHHHHHHHhCCcc--cc-eeeecccccchHH
Confidence 3357888665 22232 4688999999998874432211 22334456777666554322 34 7999999999999
Q ss_pred HHHHHcc--CCCCeEEEcCCCchhHHHHHHHcCC------------EEEEEEcCCC---C-----CCCCH---HHHHhhc
Q 013883 185 ATILGLI--NPGDEVILFAPFYDSYEATLSMAGA------------KIKCITLRPP---D-----FAIPI---EELKSTI 239 (434)
Q Consensus 185 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~G~------------~~~~v~~~~~---~-----~~~d~---~~l~~~i 239 (434)
.+++... ...+.|+...-.|++........+. ....++.... . ...++ +.++..+
T Consensus 115 ~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (431)
T d1zoda1 115 AAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLI 194 (431)
T ss_dssp HHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHH
Confidence 9987652 3457788888888876544433221 1223322210 0 01122 2332222
Q ss_pred ----ccCCcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCCh
Q 013883 240 ----SKNTRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGK 314 (434)
Q Consensus 240 ----~~~~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK 314 (434)
..+..+|++.....-.|. .++++.+++|.++|++||+++|.||++.+|...|.......+.-.+| +-+++|
T Consensus 195 ~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PD----i~~~gK 270 (431)
T d1zoda1 195 DRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPD----ILTLSK 270 (431)
T ss_dssp HHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS----EEEECH
T ss_pred HHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcc----hhcccc
Confidence 123455555433433455 46888899999999999999999999999876665554444433344 667899
Q ss_pred hhccccceeeeEEeChhhHHHHHHHh--hccccCCchHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhhhCCCE
Q 013883 315 TFSLTGWKIGWAIAPPHLTWGVRQAH--SFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFK 390 (434)
Q Consensus 315 ~~g~~G~R~G~~~~~~~~~~~l~~~~--~~~~~~~~~~~q~a~~~~L~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 390 (434)
.++ .|+.++.+++.+++.+...... ...+++.++++..++.+.|+.. ++.+++....-+..++.+.+.+.+.++.
T Consensus 271 ~l~-gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i 349 (431)
T d1zoda1 271 TLG-AGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCI 349 (431)
T ss_dssp HHH-TTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred ccc-cccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCe
Confidence 999 8999999999988877665432 2346778888888887777642 2334444444444445555555555544
Q ss_pred ee-cCCeeEEEeeecC---CC---CCCCHHHHHHHHHHhcCeE
Q 013883 391 VF-PSSGTYFVVVDHT---PF---GHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 391 ~~-~~~~~~~~~~~~~---~~---~~~~~~~~~~~Ll~~~GV~ 426 (434)
.. ...|.|+. +.+. .. .......+.+.++++ |+.
T Consensus 350 ~~vrG~Glm~~-ie~~~~~~~~~~~~~~~~~i~~~~~~~-Gl~ 390 (431)
T d1zoda1 350 GDVRGRGLLLG-VEIVKDRRTKEPADGLGAKITRECMNL-GLS 390 (431)
T ss_dssp EEEEEETTEEE-EEEEEETTTTEECTTHHHHHHHHHHHT-TEE
T ss_pred EEEeecceEEE-EEEecCCcccCccHHHHHHHHHHHHHh-Ccc
Confidence 32 33344432 2221 10 011235567777654 874
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.47 E-value=4.6e-13 Score=130.19 Aligned_cols=206 Identities=16% Similarity=0.104 Sum_probs=133.7
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC----CCC----cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHH
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYAR----GHG----VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTE 181 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~----~~G----~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ 181 (434)
++|-|..+.-+. .|..+.+++.+.+.+....... ... ..+.|+.++++++ .+++ +|+++.++++
T Consensus 27 ~~iYLd~as~g~-~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llg------a~~~-ei~~~~~~T~ 98 (404)
T d1qz9a_ 27 GVIYLDGNSLGA-RPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIG------ARDG-EVVVTDTTSI 98 (404)
T ss_dssp TCEECCTTTSCC-CBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTT------CCTT-SEEECSCHHH
T ss_pred CCEEcCCccccc-CCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhC------CCCC-cEEEecCchH
Confidence 567776664332 3455777777777653211111 001 1245666666665 6777 8999999999
Q ss_pred HHHHHHHHc------cCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCc
Q 013883 182 AIAATILGL------INPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPT 255 (434)
Q Consensus 182 ai~~~~~~l------~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPT 255 (434)
++..++... ..+|+.|++.+-.++.........+.++..++.+. +...+++.++++++++|++|.+++.+|.|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~T~lV~i~~v~~~t 177 (404)
T d1qz9a_ 99 NLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTL-RLVDSPEELPQAIDQDTAVVMLTHVNYKT 177 (404)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEE-EEESSGGGHHHHCSTTEEEEEEESBCTTT
T ss_pred HHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceec-cccccchhHHHhcCCCceEEEEecccccc
Confidence 998776532 46788888877766654333332222222221111 23446788999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhHH
Q 013883 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTW 334 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~ 334 (434)
|..++ +++|+++|+++++++++|.++...... ..+.. .+..+++.|..|.+..+..-+|+++.+++..+
T Consensus 178 G~~~p---v~~i~~~~~~~~~~~~vD~~q~~g~~~---~~~~~----~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~ 246 (404)
T d1qz9a_ 178 GYMHD---MQALTALSHECGALAIWDLAHSAGAVP---VDLHQ----AGADYAIGCTYKYLNGGPGSQAFVWVSPQLCD 246 (404)
T ss_dssp CBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC---CCHHH----HTCSEEEECSSSTTCCCTTCCCEEEECTTTTT
T ss_pred cceec---HHHHhccccccccceeEEeeccccccc---ccccc----ccceEEEEechhhcccCCceEEEEEechhhhh
Confidence 99996 566899999999999999998764321 11221 13346788888987533334688887766543
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.45 E-value=7.1e-13 Score=131.41 Aligned_cols=233 Identities=12% Similarity=-0.014 Sum_probs=137.7
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHH-cCCEEEE
Q 013883 142 YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSM-AGAKIKC 220 (434)
Q Consensus 142 Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~G~~~~~ 220 (434)
+.|..-+.++++.+|++++ .++.+++++|++.++.+++.++++|||+|+++..+|.+....... .+..++.
T Consensus 62 ~~~~~~i~eae~~~A~~~g--------a~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~ 133 (462)
T d1c4ka2 62 LIHEGPAVAAEKHAARVYN--------ADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVY 133 (462)
T ss_dssp TTTBTHHHHHHHHHHHHTT--------CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEE
T ss_pred cCCCHHHHHHHHHHHHHhC--------CCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCCcee
Confidence 3443335688888888876 343566677888888888999999999999999999988765444 3444333
Q ss_pred --EEcCCCC-------CCCCHHH---------HHhhcccCCcEEEecCCCCCcccCCCHHHHHHHHHHHHHcCcEEEEcC
Q 013883 221 --ITLRPPD-------FAIPIEE---------LKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDE 282 (434)
Q Consensus 221 --v~~~~~~-------~~~d~~~---------l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~~i~~la~~~~~~iI~De 282 (434)
++.++.+ ..++.+. ++++...+++.+++...+|-+|.+.+ +++|+++|+++|+++++|+
T Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~g~~l~vD~ 210 (462)
T d1c4ka2 134 LQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHLCDYIEFDS 210 (462)
T ss_dssp ECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGGBSEEEEEC
T ss_pred eecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHcCCEEEEec
Confidence 3333211 1223333 33344456666666666678999885 6679999999999999999
Q ss_pred cCCccccCCCC-c-cccCCC----CCCCceEEEccCChhhccccceeeeEE-eChhhH---------HHHHHHhhcc-cc
Q 013883 283 VYDKLAFEMDH-I-SIASLP----GMYERTVTMNSLGKTFSLTGWKIGWAI-APPHLT---------WGVRQAHSFL-TF 345 (434)
Q Consensus 283 ay~~~~~~~~~-~-~~~~~~----~~~~~~i~i~S~SK~~g~~G~R~G~~~-~~~~~~---------~~l~~~~~~~-~~ 345 (434)
++.......+. . ...... ...+..+++.|++|.+|..+ .|.++ .+...+ ..++...... +.
T Consensus 211 A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 288 (462)
T d1c4ka2 211 AWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMST 288 (462)
T ss_dssp TTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCS
T ss_pred hhhccccccCcCCcchhhccccccccCCccEEEEecCccccccc--ceEEEEeccccccccchhhhHHHHHHhhhhcccC
Confidence 99764322111 1 111111 11234688999999998444 34444 333221 2233322222 23
Q ss_pred CCchHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhC
Q 013883 346 ATSTPMQWAATAALRA-PETYYEELKRDYSAKKAILVEGLNAV 387 (434)
Q Consensus 346 ~~~~~~q~a~~~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (434)
.++......+..++.. ..+..+++.++..++.+.+++.+.+.
T Consensus 289 sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~ 331 (462)
T d1c4ka2 289 SPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKA 331 (462)
T ss_dssp SCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333332222222221 13344555666677777777777765
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.37 E-value=2.9e-12 Score=126.62 Aligned_cols=303 Identities=10% Similarity=0.056 Sum_probs=168.5
Q ss_pred cCCeeEeCCCC--CCCC-CcHHHHHHHHHHHHcCC----CCCCCCCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH
Q 013883 108 KHGAINLGQGF--PNFD-GPDFVKDAAIQAIRDGK----NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT 180 (434)
Q Consensus 108 ~~~~i~l~~g~--p~~~-~~~~v~~~~~~~~~~~~----~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~ 180 (434)
+...|||..|+ ..+. .+|.+.+++.+++.... ..+.. ....++.+.+++.+....+.. .+ .++++++++
T Consensus 52 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~-~~~~~~a~~lae~l~~~~~~~--~~-~v~f~~sGs 127 (461)
T d1ohwa_ 52 GNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAPKG--MS-QLITMACGS 127 (461)
T ss_dssp SCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCCTT--CC-EEEEESSHH
T ss_pred CCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccccc-cchHHHHHHHHHHHHhhhccC--cc-eeeeecchh
Confidence 34578876552 2222 35677888877654321 11111 112345666777665443322 33 799999999
Q ss_pred HHHHHHHHHcc----------------------------CCCCeEEEcCCCchhHHHHHHHc-CC-----------EEEE
Q 013883 181 EAIAATILGLI----------------------------NPGDEVILFAPFYDSYEATLSMA-GA-----------KIKC 220 (434)
Q Consensus 181 ~ai~~~~~~l~----------------------------~~gd~Vlv~~p~y~~~~~~~~~~-G~-----------~~~~ 220 (434)
+|++.+++... .+...|+....+|++........ |- ....
T Consensus 128 eAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~ 207 (461)
T d1ohwa_ 128 CSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPI 207 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCE
T ss_pred hhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCcc
Confidence 99999887542 22346888888888754333222 11 0111
Q ss_pred EEcCCCCC-------------CCCHHHHHhhcc------cCCcEEEecCCCCCccc-CCCHHHHHHHHHHHHHcCcEEEE
Q 013883 221 ITLRPPDF-------------AIPIEELKSTIS------KNTRAILMNTPHNPTGK-MFTREELNVIASLCIENDVLVFS 280 (434)
Q Consensus 221 v~~~~~~~-------------~~d~~~l~~~i~------~~~~~i~~~~p~NPTG~-~~~~e~l~~i~~la~~~~~~iI~ 280 (434)
.+.....+ ..+++.+++.+. .+..+|++...+...|. .++++.+++|.++|++||+++|+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~ 287 (461)
T d1ohwa_ 208 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLV 287 (461)
T ss_dssp ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceec
Confidence 11111000 012345555442 23455666554555665 46788899999999999999999
Q ss_pred cCcCCccccCCCCccccCCCC--CCCceEEEccCChhhccccceeeeEEeChhhHHHHHHHhhccccCCchHHHHHHHHH
Q 013883 281 DEVYDKLAFEMDHISIASLPG--MYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATSTPMQWAATAA 358 (434)
Q Consensus 281 Deay~~~~~~~~~~~~~~~~~--~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~ 358 (434)
||++.+|...|.......+.- .+| +-+++|.++ . |++.....+.. ........+++.++.+..++.+.
T Consensus 288 DEV~tG~gRtG~~~~~e~~gi~~~PD----iv~~gK~l~-~----g~~~~~~~~~~-~~~~~~~~T~~g~p~~~aaa~a~ 357 (461)
T d1ohwa_ 288 DEVQTGGGSTGKFWAHEHWGLDDPAD----VMTFSKKMM-T----GGFFHKEEFRP-NAPYRIFNTWLGDPSKNLLLAEV 357 (461)
T ss_dssp ECTTTCSSTTSSSSGGGGGCCSSCCS----EEEECGGGS-S----EEEEECGGGSC-SSTTSSCCSCSSCHHHHHHHHHH
T ss_pred cccccccccccccccccccccccCch----hhhhhhccc-c----ccccccccccc-ccccccccccccccccchhhccc
Confidence 999999977776555544422 133 447899986 3 33444332211 11122345678888888888888
Q ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhh----C-C-CEeecCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEECC
Q 013883 359 LRAPETYYEELKRDYSAKKAILVEGLNA----V-G-FKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPT 430 (434)
Q Consensus 359 L~~~~~~~~~~~~~~~~~~~~l~~~L~~----~-g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG 430 (434)
|+..++ +++.++.+++.+++.+.|++ . . +.-+...|. ++-+++... ....+++..++++ ||++.+.
T Consensus 358 l~~i~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl-~~~ie~~~~--~~~~~i~~~~~~~-Gll~~~~ 429 (461)
T d1ohwa_ 358 INIIKR--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGT-FCSFDTPDE--SIRNKLISIARNK-GVMLGGC 429 (461)
T ss_dssp HHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETT-EEEEECSSH--HHHHHHHHHHHHT-TEECEEE
T ss_pred chhhhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeeeeE-EEEEEcCCH--HHHHHHHHHHHHC-CeEEeeC
Confidence 875321 12333444444444444443 2 1 222333344 444555321 1234677777665 9998873
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.35 E-value=4e-11 Score=118.60 Aligned_cols=290 Identities=14% Similarity=0.080 Sum_probs=180.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHhhcCCCCC------CCCcEEEcCChHHHHHHHHHHccC---------
Q 013883 128 KDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVD------PEKEVTVTSGCTEAIAATILGLIN--------- 192 (434)
Q Consensus 128 ~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~------~~~~i~~t~G~~~ai~~~~~~l~~--------- 192 (434)
-+.+..++......|.......++...+.+++.+..|.+-+ .+..-++++|+++++..++.+..+
T Consensus 91 ~~~~~~~~n~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~ 170 (476)
T d1js3a_ 91 ADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAA 170 (476)
T ss_dssp HHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhccc
Confidence 33444444333333433334568899999999998887421 111467899999988877654321
Q ss_pred -CC---------CeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccC------CcEEEecCCCCCcc
Q 013883 193 -PG---------DEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKN------TRAILMNTPHNPTG 256 (434)
Q Consensus 193 -~g---------d~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~------~~~i~~~~p~NPTG 256 (434)
+| -.|++++-.|......+..+|..++.||.++ ++.+|++.|++.+++. +.+|+.+...+.||
T Consensus 171 ~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d~-~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G 249 (476)
T d1js3a_ 171 SPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDG-KFAMRASALQEALERDKAAGLIPFFVVATLGTTSCC 249 (476)
T ss_dssp STTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCT-TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTC
T ss_pred ccCcccccccCceEEEecccccHHHHHHHHhcCceEEEeccCC-CCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccce
Confidence 11 1477888999999999999999999999875 7899999999999652 23455567799999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCC-CCccccCCCCCCCceEEEccCChhhccccceeeeEEeChh-hHH
Q 013883 257 KMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM-DHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH-LTW 334 (434)
Q Consensus 257 ~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~-~~~ 334 (434)
.+-+ +++|+++|++||+|+.+|.||.++..-- +.... +.+...-.-+..+++|.++.| .-.|++..+.. ...
T Consensus 250 ~iDp---l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~--~~gi~~aDSit~d~HK~l~~P-~~~g~~l~r~~~~~~ 323 (476)
T d1js3a_ 250 SFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHL--LNGVEFADSFNFNPHKWLLVN-FDCSAMWVKRRTDLT 323 (476)
T ss_dssp CBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGG--GTTGGGCSEEEECHHHHSSCC-SSCEEEEESCHHHHH
T ss_pred eecc---HHHHHHHHHhcCcEEEEecccchhhhhhcchhhh--hcCCcccceeeecCccccccC-CcceeecccchHHHH
Confidence 8865 6668999999999999999998865321 21111 111112234566889998855 45777776532 211
Q ss_pred --------HHHHHhhc---------ccc----CCchHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCEee
Q 013883 335 --------GVRQAHSF---------LTF----ATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFKVF 392 (434)
Q Consensus 335 --------~l~~~~~~---------~~~----~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 392 (434)
.+...... .+. ....+..+++...+ ..+.++++.++..+..+++.+.|++. ++++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~--G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~ 401 (476)
T d1js3a_ 324 GAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMY--GVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVC 401 (476)
T ss_dssp GGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEC
T ss_pred HHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHH--hHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 01100000 000 01122223333333 35567888888888999999999886 78876
Q ss_pred -cCCeeEEEeeecCCCCCCCHHHHHHHHHHhcCeEEE
Q 013883 393 -PSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAI 428 (434)
Q Consensus 393 -~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~GV~v~ 428 (434)
+++-+..+ +++.+.+. -..++.++|.++..++++
T Consensus 402 ~~p~l~iV~-Fr~~~~d~-~n~~l~~~l~~~G~~~~s 436 (476)
T d1js3a_ 402 AEVTLGLVC-FRLKGSDG-LNEALLERINSARKIHLV 436 (476)
T ss_dssp SCCCSSEEE-EEESSCHH-HHHHHHHHHHHHTSCBCE
T ss_pred CCCceEEEE-EEccCChH-HHHHHHHHHHhcCCEEEe
Confidence 45555443 44433111 124567777665334443
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.09 E-value=3.2e-10 Score=108.06 Aligned_cols=191 Identities=13% Similarity=0.091 Sum_probs=120.4
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCCC------CCC-CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChH-H
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQ------YAR-GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCT-E 181 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~------Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~-~ 181 (434)
...||+-| .-..|+.|++++.+.+.+..+. .+. ..-..++.+.+.+.+.+..+.+ +.. +|++++|++ .
T Consensus 3 ~~~~F~pG--P~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~-~~~-~i~~~~gs~t~ 78 (361)
T d2c0ra1 3 RAYNFNAG--PAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNP-TGY-KVLFIQGGAST 78 (361)
T ss_dssp CCEECCSS--SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCC-SSE-EEEEESSHHHH
T ss_pred CCcccCCC--CcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCC-CCC-EEEEECCCchH
Confidence 35677543 1234678888887765431100 111 1112455566666666666653 222 677766655 4
Q ss_pred HHHHHHHHccCCCCeEEEcCCCchh--HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCC
Q 013883 182 AIAATILGLINPGDEVILFAPFYDS--YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMF 259 (434)
Q Consensus 182 ai~~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~ 259 (434)
++.++...+..+|+.+++..-.... +..+.+..|..+..+..+. +..++++.+++.+..++ .+. .+|.||...
T Consensus 79 ~~ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~---v~~~tg~~~ 153 (361)
T d2c0ra1 79 QFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEA-SNYMTLPKLQEIQLQDN-AAY---LHLTSNETI 153 (361)
T ss_dssp HHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGG-GTTCSCCCGGGCCCCTT-EEE---EEEESEETT
T ss_pred HHHHHHhccccCCCceEEEeechhhhhhhhhhhhcCceeeeecccc-ccccchhhhhhhcccCc-ceE---EEEecccce
Confidence 5566677778889888766554443 4566788999988888764 44567777777766554 332 357788887
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccc
Q 013883 260 TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGW 321 (434)
Q Consensus 260 ~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~ 321 (434)
+.+ +|.++|+++|+++++|.+.+... ....+..+ .+.+.|.+|.++.+|.
T Consensus 154 ~~~---~i~~~~~~~~al~~vDavss~g~---~~id~~~~------di~~~s~~k~~~~~~~ 203 (361)
T d2c0ra1 154 EGA---QFKAFPDTGSVPLIGDMSSDILS---RPFDLNQF------GLVYAGAQKNLGPSGV 203 (361)
T ss_dssp TTE---ECSSCCCCTTSCEEEECTTTTTS---SCCCGGGC------SEEEEETTTTTCCSSC
T ss_pred ecc---eEEEeeccCCceEEEEeeccccc---cccccccc------eeEEEecccccccccC
Confidence 644 57788999999999999997632 22222222 2556688999987764
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.81 E-value=1.4e-07 Score=90.87 Aligned_cols=287 Identities=18% Similarity=0.232 Sum_probs=170.2
Q ss_pred eCCCCCCCCCcHHHHHHHHH-HHHcCCCCCCC--CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHHHc
Q 013883 114 LGQGFPNFDGPDFVKDAAIQ-AIRDGKNQYAR--GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGL 190 (434)
Q Consensus 114 l~~g~p~~~~~~~v~~~~~~-~~~~~~~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~~l 190 (434)
++.|.-+.-.|+.+.+.+.. ..-...+.|.| .+|..++.-.+.+++.+..|.++. +.-.-.|++.....++.+.
T Consensus 69 ig~G~~~~~~p~~i~~~~~~~~~~t~ytPyqpE~sQG~Lq~l~e~q~~l~eltGmd~~---n~s~~~ga~a~~~~~~~~~ 145 (437)
T d1wyua1 69 LGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIA---NASMYDGATALAEGVLLAL 145 (437)
T ss_dssp CCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEE---CSCBSSHHHHHHHHHHHHH
T ss_pred cCcccCCceeCHHHHHHHhChhhhhhCCCcchHHHHHHHHHHHHHHHHHHHhhCCCcc---ccCchHHHHHHHHHHHHHH
Confidence 34454444456655443211 11112334444 457667777778888877777543 3445577777776665544
Q ss_pred c-CCCCeEEEcCCCchhHHHH----HHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCCHHHHH
Q 013883 191 I-NPGDEVILFAPFYDSYEAT----LSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELN 265 (434)
Q Consensus 191 ~-~~gd~Vlv~~p~y~~~~~~----~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~~e~l~ 265 (434)
. ...+++++..-.++.+... +...|.+++.++.++ +..+.++ +.+++.+|++.+| |-.|..- +++
T Consensus 146 ~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~--~~~~~~~----~~~~~Aavmi~~P-nt~G~~e---d~~ 215 (437)
T d1wyua1 146 RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEG--GRTPLPE----VGEEVGAVVVQNP-NFLGALE---DLG 215 (437)
T ss_dssp HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBT--TBCCCCC----CCTTEEEEEEESS-CTTSBCC---CHH
T ss_pred hhhcccccccccccChHHhhhhhhhcccceeeEEeeeccc--ccchhhh----hccceeEEEEccc-ccccccc---chH
Confidence 2 3457899988888876554 556899999998874 2223222 5678999999999 4578763 578
Q ss_pred HHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhh----ccccceeeeEEeChhhHHHH-----
Q 013883 266 VIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTF----SLTGWKIGWAIAPPHLTWGV----- 336 (434)
Q Consensus 266 ~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~----g~~G~R~G~~~~~~~~~~~l----- 336 (434)
+|++++++.|.+++.|..- +...+ ..-++..+-.|++++ +|.| |..|.-.|++.+.+++...+
T Consensus 216 ~i~~~~h~~G~l~~~~ad~--~al~~-----l~~Pg~~GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgriv 287 (437)
T d1wyua1 216 PFAEAAHGAGALFVAVADP--LSLGV-----LKPPGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLV 287 (437)
T ss_dssp HHHHHHHHTTCEEEEECCT--TGGGT-----BCCHHHHTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCE
T ss_pred HHHHHhhhccceEEeeech--hhhhc-----cccccccccceEeec-cceeccccCCCcCccccccccchhhcccccccc
Confidence 8999999999988876432 22111 111111222355554 4433 33455678888877654322
Q ss_pred -----------------------HHHhhccccCCchH--HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhC-CCE
Q 013883 337 -----------------------RQAHSFLTFATSTP--MQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAV-GFK 390 (434)
Q Consensus 337 -----------------------~~~~~~~~~~~~~~--~q~a~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 390 (434)
++-+.....+.+.. +.++...+...+.+.++++.++...+.+++.+.|.+. |+.
T Consensus 288 g~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~ 367 (437)
T d1wyua1 288 SETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVR 367 (437)
T ss_dssp EEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCE
T ss_pred ccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCee
Confidence 22222222233322 2233333333346678999999999999999999986 787
Q ss_pred eecCCeeEEE-eeecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 391 VFPSSGTYFV-VVDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 391 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
...+..-|.- .+++ +. +..+++++|+++ |+.
T Consensus 368 ~~~~~~~f~ef~v~~---~~-~~~~i~k~L~d~-G~~ 399 (437)
T d1wyua1 368 PFTPKPFFNEFALAL---PK-DPEAVRRALAER-GFH 399 (437)
T ss_dssp ECSCSSBCSEEEEEC---SS-CHHHHHHHHHHT-TCC
T ss_pred ccCCCCeeeEEEEEC---CC-CHHHHHHHHHhC-CCC
Confidence 6544332211 2333 22 577899988765 874
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.78 E-value=3.1e-07 Score=89.46 Aligned_cols=295 Identities=18% Similarity=0.155 Sum_probs=169.1
Q ss_pred eEeCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC---CCCcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHHHHHHHH
Q 013883 112 INLGQGFPNFDGPDFVKDAAIQAIRDGKNQYAR---GHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATIL 188 (434)
Q Consensus 112 i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~ai~~~~~ 188 (434)
+-+|.++..+. |.+.+.+... -...+-|.| .+|..+..=+.+..+.+..|.++. +.-.-.|++.+...++.
T Consensus 68 ~~lG~~~~hy~--P~v~~~~~~~-~TaYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdva---NaS~yDGatA~aeA~~m 141 (471)
T d1wyub1 68 YPLGSCTMKYN--PKLHEEAARL-FADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAI---TLEPAAGAHGELTGILI 141 (471)
T ss_dssp CCBTTTCCCCC--CHHHHHHHHT-TSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEE---ECCCSSHHHHHHHHHHH
T ss_pred cCCccccCccC--cchhhhHHHH-HhccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc---ccccchHHHHHHHHHHH
Confidence 44454454443 3344444332 123345665 456544444455555555565442 34455676665555544
Q ss_pred Hc---cCCC----CeEEEcCC-CchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCCC
Q 013883 189 GL---INPG----DEVILFAP-FYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMFT 260 (434)
Q Consensus 189 ~l---~~~g----d~Vlv~~p-~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~~ 260 (434)
+. .+.| ..+.+..+ ............+..++.++.+. ....|.+.++.....++.++++.+|++..+..-
T Consensus 142 a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e~- 219 (471)
T d1wyub1 142 IRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP-EGEVDLEALKRELGPHVAALMLTNPNTLGLFER- 219 (471)
T ss_dssp HHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT-TSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCT-
T ss_pred HHHHhhhcccccccccccCCcccccceeeeeecccceeecccccc-cccccchhhhhhhhccccceeeccCCCcccccc-
Confidence 33 1122 23444444 44555666677888888888664 567789999998888888999999977665543
Q ss_pred HHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEc---cCChhhccccceeeeEEeChhhHHHHH
Q 013883 261 REELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMN---SLGKTFSLTGWKIGWAIAPPHLTWGVR 337 (434)
Q Consensus 261 ~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~---S~SK~~g~~G~R~G~~~~~~~~~~~l~ 337 (434)
+.+++.+++++++..+++|-+--.....- ....+.+..+++++ +|.=-+|..|.-+|++.+.++++.++-
T Consensus 220 --~~~~~~~~~h~~g~~~~~~~~~~~~~~~l-----~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~P 292 (471)
T d1wyub1 220 --RILEISRLCKEAGVQLYYDGANLNAIMGW-----ARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLP 292 (471)
T ss_dssp --THHHHHHHHHHHTCEEEEEGGGGGGTTTT-----CCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCC
T ss_pred --hhhhhHHHHHhccccccccccchhhhhhc-----cccCcccccccccccccccccccccccccccceeehhhhhccCC
Confidence 46678888999998888776543322111 10111112222222 333333445666899999888765431
Q ss_pred -------------------HHhhccccCCc-hHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecCCe
Q 013883 338 -------------------QAHSFLTFATS-TPMQWAATAALR-APETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSG 396 (434)
Q Consensus 338 -------------------~~~~~~~~~~~-~~~q~a~~~~L~-~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 396 (434)
.+++.. .+.+ .+...++..+|. .+.+.++++.++...+..++.+.|+..|+++.. .+
T Consensus 293 GRiV~~~~~~~~~~~~REqhIrRe~-actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~-~~ 370 (471)
T d1wyub1 293 VPLVERGEEGFYLDFDRPKSIGRVR-SFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPY-DG 370 (471)
T ss_dssp SCEEEECSSCEEEECCCTTCCCCSS-STTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSS-CS
T ss_pred CceecCCCccccccCCCcccccchh-hhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhcCceecc-Cc
Confidence 111111 1222 233333333333 346789999999999999999999888988753 34
Q ss_pred eEEE-e-eecCCCCCCCHHHHHHHHHHhcCeE
Q 013883 397 TYFV-V-VDHTPFGHETDIAFCEYLIKEVGVV 426 (434)
Q Consensus 397 ~~~~-~-~~~~~~~~~~~~~~~~~Ll~~~GV~ 426 (434)
.+|- | +++ +.+. +..+++++|+++ |+.
T Consensus 371 ~ff~EFvv~~-~~~~-~~~~i~k~L~~~-G~~ 399 (471)
T d1wyub1 371 PSMHEFVAQP-PEGF-RALDLAKGLLEL-GFH 399 (471)
T ss_dssp SCCSCEEEBC-STTC-CHHHHHHHHHHT-TCC
T ss_pred ceeeEEeecC-CCCC-CHHHHHHHHHHc-CCC
Confidence 3432 2 232 2333 467899999875 874
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=1.3e-08 Score=96.08 Aligned_cols=296 Identities=14% Similarity=0.012 Sum_probs=153.0
Q ss_pred eeEeCCCCCCCCCcHHHHHHHHHHHHcCCCC------CCCCCC--cHHHHHHHHHHHHhhcCCCCCCCCcEEEcCChHHH
Q 013883 111 AINLGQGFPNFDGPDFVKDAAIQAIRDGKNQ------YARGHG--VPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEA 182 (434)
Q Consensus 111 ~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~~------Y~~~~G--~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G~~~a 182 (434)
+.||+-| ....|+.|++++.+.+.+-... ... .+ ..++.+.+.+.+.+..+. +.+..|++++|++++
T Consensus 2 ~~nF~pG--P~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sH-Rs~ef~~l~~~~r~~l~~l~~~--~~~~~v~~~~gs~t~ 76 (360)
T d1bjna_ 2 IFNFSSG--PAMLPAEVLKQAQQELRDWNGLGTSVMEVSH-RGKEFIQVAEEAEKDFRDLLNV--PSNYKVLFCHGGGRG 76 (360)
T ss_dssp CEECCSS--SCCCCHHHHHHHHHTSSSGGGSSSCGGGSCT-TSHHHHHHHHHHHHHHHHHHTC--CTTEEEEEESSHHHH
T ss_pred eEEeCCC--CcCCCHHHHHHHHHHHhhhcccCccccccCc-CCHHHHHHHHHHHHHHHHHhCC--CCCCEEEEECCchHH
Confidence 4577543 1234778888887765431100 111 11 123333344444444443 233368887777665
Q ss_pred HHHH-HHHccCCCCeEEEcCCCchhH--HHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCcccCC
Q 013883 183 IAAT-ILGLINPGDEVILFAPFYDSY--EATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPTGKMF 259 (434)
Q Consensus 183 i~~~-~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPTG~~~ 259 (434)
...+ ...+..+++.+++..-.+... ....+..|..++.+.... +..++.+.+++.+..+++++.+.+.+|.||...
T Consensus 77 ~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~ 155 (360)
T d1bjna_ 77 QFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVT-VDGLRAVKPMREWQLSDNAAYMHYCPNETIDGI 155 (360)
T ss_dssp HHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEE-ETTEEEECCGGGCCCCSSCSCEEECSEETTTTE
T ss_pred HHhhhhhcccccccccceecccchhhhhHHHHhhcCccceeecccc-CCCcchhhhhhhhccCCceeEEEecccccccCc
Confidence 5444 445667788888877666653 334455665555554432 344566666777777888888888899999876
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEeChhhH------
Q 013883 260 TREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT------ 333 (434)
Q Consensus 260 ~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~~~~~~------ 333 (434)
+... + .++.+++.+++|.+.+..... ... .+-.+.+.|.+|.++.++. .|+++..+...
T Consensus 156 ~~~~---i--~~~~~~~~v~vDa~~~~~~~~---vd~------~~~dv~~~ss~k~~~~~~~-~~~~~~~~~~~~~~~~~ 220 (360)
T d1bjna_ 156 AIDE---T--PDFGADVVVAADFSSTILSRP---IDV------SRYGVIYAGAQKNIGPAGL-TIVIVREDLLGKANIAC 220 (360)
T ss_dssp ECCC---C--CCCCTTCCEEEECTTTTTSSC---CCG------GGCSEEEEETTTTTSSTTC-EEEEEEGGGCSCCCTTS
T ss_pred cccc---e--ecccccceeeeeeecccccee---eee------ccceeEEEEcccccccCCC-ceeEeeehhhhhccccC
Confidence 5432 3 256779999999887753221 111 1223678888999985553 44444332211
Q ss_pred ------HHHHHHhhccccCCchHHHHHHH-HHHhC-ChHHHHHHHHHHHHHHHHHHHHhhhCCCEeecC-C---eeEEEe
Q 013883 334 ------WGVRQAHSFLTFATSTPMQWAAT-AALRA-PETYYEELKRDYSAKKAILVEGLNAVGFKVFPS-S---GTYFVV 401 (434)
Q Consensus 334 ------~~l~~~~~~~~~~~~~~~q~a~~-~~L~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~---~~~~~~ 401 (434)
........ ............+. ..+.. .+...+...++.++....+.+.+...+.....+ . ....+.
T Consensus 221 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~ 299 (360)
T d1bjna_ 221 PSILDYSILNDNGS-MFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVP 299 (360)
T ss_dssp CGGGCHHHHHHTTT-CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEE
T ss_pred CcchhhHHHHhhhh-hccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEE
Confidence 11111111 11222222222221 11111 112334445555555566666666554333211 1 111222
Q ss_pred eecCCCCCCCHHHHHHHHHHhcCeEEECCC
Q 013883 402 VDHTPFGHETDIAFCEYLIKEVGVVAIPTS 431 (434)
Q Consensus 402 ~~~~~~~~~~~~~~~~~Ll~~~GV~v~pG~ 431 (434)
+.++ .+. +..++...| +++||.+..|.
T Consensus 300 f~~~-~~~-~~~~~~~~l-~~~Gi~~~~G~ 326 (360)
T d1bjna_ 300 FQLA-DSA-LDKLFLEES-FAAGLHALKGH 326 (360)
T ss_dssp EEES-SGG-GHHHHHHHH-HHTTEECCBCC
T ss_pred EEcC-Ccc-cHHHHHHHH-HHCCCEeecCC
Confidence 3332 222 355666655 56799998884
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=98.57 E-value=3.4e-07 Score=86.23 Aligned_cols=193 Identities=9% Similarity=0.052 Sum_probs=109.0
Q ss_pred CeeEeCCCCCCCCCcHHHHHHHHHHHHcCCC--CC----CC-CC----CcHHHHHHHHHHHHhhcCCCCCCCCcEEEcCC
Q 013883 110 GAINLGQGFPNFDGPDFVKDAAIQAIRDGKN--QY----AR-GH----GVPEFNSAIASRFKKDSGLEVDPEKEVTVTSG 178 (434)
Q Consensus 110 ~~i~l~~g~p~~~~~~~v~~~~~~~~~~~~~--~Y----~~-~~----G~~~lr~~ia~~l~~~~g~~~~~~~~i~~t~G 178 (434)
.+.||+-| | -+.|+.|++++.+.+.+-.. .. +. .. =+.+.|+.++++++ .+.+..|++++|
T Consensus 3 ~~~nF~pG-P-~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~------~~~~~~i~~~~g 74 (360)
T d1w23a_ 3 QVFNFNAG-P-SALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQ------IPNDYQILFLQG 74 (360)
T ss_dssp CCEECCSS-S-CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHT------CCTTEEEEEESS
T ss_pred ceeEeCCC-C-cCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhC------CCCCCEEEEeCC
Confidence 34567655 1 23467888877765533100 00 00 00 01345555555554 333336888888
Q ss_pred hHHHHHHHHH-HccCCCCeEEEcCCCchh--HHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhcccCCcEEEecCCCCCc
Q 013883 179 CTEAIAATIL-GLINPGDEVILFAPFYDS--YEATLSMAGAKIKCITLRPPDFAIPIEELKSTISKNTRAILMNTPHNPT 255 (434)
Q Consensus 179 ~~~ai~~~~~-~l~~~gd~Vlv~~p~y~~--~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~i~~~~p~NPT 255 (434)
++++...+.. .+..+++.+++....+++ +...+...+...+...... ....+++.++...... .... ..|-|
T Consensus 75 t~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~---~~~~t 149 (360)
T d1w23a_ 75 GASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKA-NSYQSIPDFSEFQLNE-NDAY---LHITS 149 (360)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGG-GTSCSCCCGGGCCCCT-TEEE---EEEES
T ss_pred cHHHHHHHHHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeecccc-ccccchhhhhhccccc-ccce---eEecC
Confidence 8777665544 445677888877666554 3445566676666655443 2222334444443332 2332 24668
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcCcCCccccCCCCccccCCCCCCCceEEEccCChhhccccceeeeEEe
Q 013883 256 GKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA 328 (434)
Q Consensus 256 G~~~~~e~l~~i~~la~~~~~~iI~Deay~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R~G~~~~ 328 (434)
|...+. ++|.++|+++|+++|+|.+.+.... ...+..+ .+.+.+++|.++++|. .|+++.
T Consensus 150 g~~~~~---~~i~~~~~~~g~l~ivDavqs~g~~---~id~~~~------~vd~~~~~~~k~~~~~-~~~~~~ 209 (360)
T d1w23a_ 150 NNTIYG---TQYQNFPEINHAPLIADMSSDILSR---PLKVNQF------GMIYAGAQKNLGPSGV-TVVIVK 209 (360)
T ss_dssp EETTTT---EECSSCCCCCSSCEEEECTTTTTSS---CCCGGGC------SEEEEETTTTTSCTTC-EEEEEE
T ss_pred Cccccc---eeeeeccccceeeEEeecccccccc---ccccccc------cceEEeeccccccCCc-ceeeEe
Confidence 888754 4588889999999999999986432 2222222 2556677888775553 444443
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=86.52 E-value=2 Score=36.16 Aligned_cols=94 Identities=9% Similarity=0.066 Sum_probs=60.3
Q ss_pred cEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc------CCcE
Q 013883 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK------NTRA 245 (434)
Q Consensus 172 ~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~ 245 (434)
.+++|.|+...-..+...|.+.|-.|++.+-.-.......+..+...+.+.+. |.+.+++.++. +..+
T Consensus 7 ~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~------~~~~v~~~~~~~~~~~g~iDi 80 (242)
T d1ulsa_ 7 AVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVA------DPASVERGFAEALAHLGRLDG 80 (242)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTT------CHHHHHHHHHHHHHHHSSCCE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecC------CHHHHHHHHHHHHHhcCCceE
Confidence 56777776666677788889999899988776666777777777766544333 45666655532 3454
Q ss_pred EEecCCCCCccc--CCCHHHHHHHHHHH
Q 013883 246 ILMNTPHNPTGK--MFTREELNVIASLC 271 (434)
Q Consensus 246 i~~~~p~NPTG~--~~~~e~l~~i~~la 271 (434)
++.+.-.++.+. ..+.++|+++.++-
T Consensus 81 lVnnAG~~~~~~~~~~~~~~~~~~~~vN 108 (242)
T d1ulsa_ 81 VVHYAGITRDNFHWKMPLEDWELVLRVN 108 (242)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHH
T ss_pred EEECCcccccCchhhCcchhhhcccccc
Confidence 544322222222 46888999888753
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=83.45 E-value=2.8 Score=35.14 Aligned_cols=96 Identities=6% Similarity=0.018 Sum_probs=64.3
Q ss_pred cEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc------CCcE
Q 013883 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK------NTRA 245 (434)
Q Consensus 172 ~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~ 245 (434)
.+++|.|+...-..+.+.|.+.|-+|++..-.-.......+.+|.++..+..|-. |.+.+++.++. +...
T Consensus 7 ~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls----~~~~i~~~~~~i~~~~g~iDi 82 (241)
T d2a4ka1 7 TILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVS----DPKAVEAVFAEALEEFGRLHG 82 (241)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTT----SHHHHHHHHHHHHHHHSCCCE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCC----CHHHHHHHHHHHHHHhCCccE
Confidence 6777777777777788889999999998877666677778888888888877632 45566554432 4556
Q ss_pred EEecCCCCCccc--CCCHHHHHHHHHHH
Q 013883 246 ILMNTPHNPTGK--MFTREELNVIASLC 271 (434)
Q Consensus 246 i~~~~p~NPTG~--~~~~e~l~~i~~la 271 (434)
++.+...++.+. ..+.++|++..++.
T Consensus 83 LinnAg~~~~~~~~~~~~~~~~~~~~~n 110 (241)
T d2a4ka1 83 VAHFAGVAHSALSWNLPLEAWEKVLRVN 110 (241)
T ss_dssp EEEGGGGTTTTC----CHHHHHHHHHHH
T ss_pred eccccccccccchhhhhccccccccccc
Confidence 655433333333 45777787776643
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.24 E-value=3.7 Score=34.46 Aligned_cols=95 Identities=13% Similarity=0.154 Sum_probs=60.4
Q ss_pred cEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc------CCcE
Q 013883 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK------NTRA 245 (434)
Q Consensus 172 ~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~ 245 (434)
.+++|.|+...-..+...|.+.|-+|++.+-.-.......+..+.+...+..|-. |.+.+++.++. +..+
T Consensus 8 ~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~----~~~~v~~~~~~~~~~~g~idi 83 (244)
T d1nffa_ 8 VALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVT----QPAQWKAAVDTAVTAFGGLHV 83 (244)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTT----CHHHHHHHHHHHHHHHSCCCE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecC----CHHHHHHHHHHHHHHhCCCeE
Confidence 5666666655556667788899999888776666666667767777777776531 45566555432 3455
Q ss_pred EEecCCCCCccc--CCCHHHHHHHHHH
Q 013883 246 ILMNTPHNPTGK--MFTREELNVIASL 270 (434)
Q Consensus 246 i~~~~p~NPTG~--~~~~e~l~~i~~l 270 (434)
++.+....+.+. .++.++|++..++
T Consensus 84 linnAG~~~~~~~~~~~~~~~~~~~~v 110 (244)
T d1nffa_ 84 LVNNAGILNIGTIEDYALTEWQRILDV 110 (244)
T ss_dssp EEECCCCCCCBCTTTSCHHHHHHHHHH
T ss_pred EEECCcccCCCchhhCCHHHHhHHhhc
Confidence 544433333333 4578888888764
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=82.58 E-value=3 Score=35.28 Aligned_cols=95 Identities=14% Similarity=0.128 Sum_probs=62.7
Q ss_pred cEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc------CCcE
Q 013883 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK------NTRA 245 (434)
Q Consensus 172 ~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~ 245 (434)
.+++|.|+...-..+...|.+.|-.|++.+-.-.......+..|.++..+..|-. |.+.++++++. +..+
T Consensus 7 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt----~~~~v~~~~~~~~~~~g~iDi 82 (256)
T d1k2wa_ 7 TALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVT----DQASIDRCVAELLDRWGSIDI 82 (256)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTT----CHHHHHHHHHHHHHHHSCCCE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCC----CHHHHHHHHHHHHHHhCCccE
Confidence 5677777666667777888899988888776656667777778888888877632 45666655533 4555
Q ss_pred EEecCCCCCccc--CCCHHHHHHHHHH
Q 013883 246 ILMNTPHNPTGK--MFTREELNVIASL 270 (434)
Q Consensus 246 i~~~~p~NPTG~--~~~~e~l~~i~~l 270 (434)
++.+.-..+.+. .++.|+|+++.++
T Consensus 83 lVnnAg~~~~~~~~~~~~~~~~~~~~v 109 (256)
T d1k2wa_ 83 LVNNAALFDLAPIVEITRESYDRLFAI 109 (256)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred EEeecccccccccccCCHHHHHhhhce
Confidence 544332222222 4578888888764
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=81.77 E-value=4 Score=34.17 Aligned_cols=95 Identities=21% Similarity=0.114 Sum_probs=60.1
Q ss_pred cEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc------CCcE
Q 013883 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK------NTRA 245 (434)
Q Consensus 172 ~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~ 245 (434)
.+++|.|+...-..+...|.+.|..|++.+-.-.......+..+.+...+..|-. |.+.+++.++. +...
T Consensus 6 ~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~----~~~~v~~~~~~~~~~~g~iDi 81 (243)
T d1q7ba_ 6 IALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVT----DPASIESVLEKIRAEFGEVDI 81 (243)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTT----CHHHHHHHHHHHHHHTCSCSE
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEec----CHHHhhhhhhhhhcccCCcce
Confidence 5666766666666677788899999988776656666666777777777776531 45555554432 4455
Q ss_pred EEecCCCCCccc--CCCHHHHHHHHHH
Q 013883 246 ILMNTPHNPTGK--MFTREELNVIASL 270 (434)
Q Consensus 246 i~~~~p~NPTG~--~~~~e~l~~i~~l 270 (434)
++.+....+.+. ..+.++|+++.++
T Consensus 82 lVnnAg~~~~~~~~~~~~~~~~~~~~v 108 (243)
T d1q7ba_ 82 LVNNAGITRDNLLMRMKDEEWNDIIET 108 (243)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred ehhhhhhccccccccccccccccccce
Confidence 554322333332 4578888887763
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=81.30 E-value=4.2 Score=34.35 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=61.0
Q ss_pred cEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc------CCcE
Q 013883 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK------NTRA 245 (434)
Q Consensus 172 ~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~ 245 (434)
.+++|.|+...-..+...|.+.|-+|++.+-.-.......+..|.++..+..|-. |.+.+++.+.. +...
T Consensus 7 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~----~~~~v~~~~~~~~~~~g~iDi 82 (254)
T d1hdca_ 7 TVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVT----IEEDWQRVVAYAREEFGSVDG 82 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTT----CHHHHHHHHHHHHHHHSCCCE
T ss_pred EEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccC----CHHHHHHHHHHHHHHcCCccE
Confidence 5677766666666777888899988888776666667777777877877777631 45555555432 4454
Q ss_pred EEecCCCCCcc--cCCCHHHHHHHHHH
Q 013883 246 ILMNTPHNPTG--KMFTREELNVIASL 270 (434)
Q Consensus 246 i~~~~p~NPTG--~~~~~e~l~~i~~l 270 (434)
++.+.-..+.+ ...+.++|+++.++
T Consensus 83 lVnnAg~~~~~~~~~~~~~~~~~~~~v 109 (254)
T d1hdca_ 83 LVNNAGISTGMFLETESVERFRKVVEI 109 (254)
T ss_dssp EEECCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred EEecCccccccccccccccccchhhhH
Confidence 44332222222 24578888887764
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=81.18 E-value=5.5 Score=33.47 Aligned_cols=95 Identities=11% Similarity=0.060 Sum_probs=61.4
Q ss_pred cEEEcCChHHHHHHHHHHccCCCCeEEEcCCCchhHHHHHHHcCCEEEEEEcCCCCCCCCHHHHHhhccc------CCcE
Q 013883 172 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPDFAIPIEELKSTISK------NTRA 245 (434)
Q Consensus 172 ~i~~t~G~~~ai~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~ 245 (434)
.+++|.|+...-..+...|.+.|-.|++.+-.-.......+..|.+...+..|-. |.+.+++.++. +..+
T Consensus 8 ~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~----~~~~~~~~~~~~~~~~g~iDi 83 (253)
T d1hxha_ 8 VALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVS----SEADWTLVMAAVQRRLGTLNV 83 (253)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTT----CHHHHHHHHHHHHHHHCSCCE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecC----CHHHHHHHHHHHHHHhCCCCe
Confidence 5666666666666677788899999998877666667777777887777766531 44555554432 3455
Q ss_pred EEecCCCCCccc--CCCHHHHHHHHHH
Q 013883 246 ILMNTPHNPTGK--MFTREELNVIASL 270 (434)
Q Consensus 246 i~~~~p~NPTG~--~~~~e~l~~i~~l 270 (434)
++.+.-....+. .++.++|++..++
T Consensus 84 lVnnAG~~~~~~~~~~~~~~~~~~~~v 110 (253)
T d1hxha_ 84 LVNNAGILLPGDMETGRLEDFSRLLKI 110 (253)
T ss_dssp EEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred EEecccccCCCCcccCCHHHHHHHHHH
Confidence 544433333333 4578888888764
|