Citrus Sinensis ID: 013903

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
MLQSLVVPQSPINSSTAMKSKRVDRDDDDDNPNGDPSRAVAKRANVIEQEQKLQEQEEEAEQHDVVVMEGESAGLRLLGLLLQCAECVAMDNLDDATDLLPEISELSSPFVSSPERVGAYFAHALQARVVSSCLGTYSPLTTKSLTLSQSQKIFNALQSYNSICPLIKFSHFTANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPFDFNPLEGKIGNIIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRMLTLLRPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDGLGADSIERHTVEQQLFGCEIRNIVAVGGPKRTGEVKVERWGEELKRVGFRPVSLSGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPSD
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHccccEEEEEEcccccccccccccccccccEEEEEEEcccccccccccHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHcccccccEEEEEEccEEEEEEccEEEEEEEEEEccc
ccHHccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccEEEEccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHccccEEEEcEHHccHccccHHHcccccccEEEEEEEHcccccccccHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHEcccHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHccccEEEEccccccccEEEEcccccc
mlqslvvpqspinsstamkskrvdrdddddnpngdpsrAVAKRANVIEQEQKLQEQEEEAEQHDVVVMEGESAGLRLLGLLLQCAECVAmdnlddatdllpeiselsspfvsspervGAYFAHALQARVVSsclgtysplttkslTLSQSQKIFNALQSYnsicplikfshfTANQAIFQAldgadcvhiidldimqglqwpgLFHILVSRSKKIRsmritgfgsssERLADFAMslglpfdfnplegkigniidvsqlgvrpgeTIVVHWMHHCLyditgsdlgtLRMLTLLRPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALgdglgadsiERHTVEQQLFGCEIRNivavggpkrtgevKVERWGEElkrvgfrpvslsgnpAAQASLLLgmfpwkgytlveengclklgwKDLSLLTASAWQPSD
mlqslvvpqspinsstamkskrvdrdddddnpngdpsravakRANVIEQEQKLQEQEEEAEQHDVVVMEGESAGLRLLGLLLQCAECVAMDNLDDATDLLPEISELSSPFVSSPERVGAYFAHALQARVVSSCLGTYSPLTTKSLTLSQSQKIFNALQSYNSICPLIKFSHFTANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPFDFNPLEGKIGNIIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRMLTLLRPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDGLGADSIERHTVEQqlfgceirnivavggpkrtgevkvERWGEELKrvgfrpvslsgNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLltasawqpsd
MLQSLVVPQSPINSSTAMKSKRVdrdddddnpngdpSRAVAKRANVIeqeqklqeqeeeaeqHDVVVMEGESAglrllglllQCAECVAMDNLDDATDLLPEISELSSPFVSSPERVGAYFAHALQARVVSSCLGTYSPLTTKSLTLSQSQKIFNALQSYNSICPLIKFSHFTANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPFDFNPLEGKIGNIIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRMLTLLRPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDGLGADSIERHTVEQQLFGCEIRNIVAVGGPKRTGEVKVERWGEELKRVGFRPVSLSGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPSD
*****************************************************************VVMEGESAGLRLLGLLLQCAECVAMDNLDDATDLLPEISEL**PFVSSPERVGAYFAHALQARVVSSCLGTYSPLTTKSLTLSQSQKIFNALQSYNSICPLIKFSHFTANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPFDFNPLEGKIGNIIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRMLTLLRPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDGLGADSIERHTVEQQLFGCEIRNIVAVGGPKRTGEVKVERWGEELKRVGFRPVSLSGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASA*****
***S************************************************************************LLGLLLQCAECVAMDNLDDATDLLPEISELSS***SSPERVGAYFAHALQARVVSSCLGT***************KIFNALQSYNSICPLIKFSHFTANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPFDFNPLEGKIGNIIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRMLTLLRPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDGLGADSIERHTVEQQLFGCEIRNIVAVGGPKRTGEVKVERWGEELKRVGFRPVSLSGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPSD
MLQSLVVPQSPINS**********************SRAVAKRANVIEQ**************DVVVMEGESAGLRLLGLLLQCAECVAMDNLDDATDLLPEISELSSPFVSSPERVGAYFAHALQARVVSSCLGTYSPLTTKSLTLSQSQKIFNALQSYNSICPLIKFSHFTANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPFDFNPLEGKIGNIIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRMLTLLRPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDGLGADSIERHTVEQQLFGCEIRNIVAVGGPKRTGEVKVERWGEELKRVGFRPVSLSGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPSD
***************************************************************DVVVMEGESAGLRLLGLLLQCAECVAMDNLDDATDLLPEISELSSPFVSSPERVGAYFAHALQARVVSSCLGTYSPLTTKSLTLSQSQKIFNALQSYNSICPLIKFSHFTANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPFDFNPLEGKIGNIIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRMLTLLRPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDGLGADSIERHTVEQQLFGCEIRNIVAVGGPKRTGEVKVERWGEELKRVGFRPVSLSGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPS*
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MLQSLVVPQSPINSSTAMKSKRVDRDDDDDNPNGDPSRxxxxxxxxxxxxxxxxxxxxxxxxxxxxVMEGESAGLRLLGLLLQCAECVAMDNLDDATDLLPEISELSSPFVSSPERVGAYFAHALQARVVSSCLGTYSPLTTKSLTLSQSQKIFNALQSYNSICPLIKFSHFTANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADFAMSLGLPFDFNPLEGKIGNIIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRMLTLLRPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDGLGADSIERHTVEQQLFGCEIRNIVAVGGPKRTGEVKVERWGEELKRVGFRPVSLSGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPSD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query434 2.2.26 [Sep-21-2011]
Q9FHZ1405 Scarecrow-like protein 23 yes no 0.905 0.970 0.648 1e-148
Q9M384653 Protein SCARECROW OS=Arab no no 0.866 0.575 0.580 1e-125
Q2Z2E9783 Protein SCARECROW OS=Ipom N/A no 0.882 0.489 0.578 1e-124
Q9AVK4819 Protein SCARECROW OS=Pisu N/A no 0.801 0.424 0.607 1e-124
Q2RB59651 Protein SCARECROW 1 OS=Or no no 0.804 0.536 0.594 1e-117
Q9FUZ7668 Protein SCARECROW OS=Zea N/A no 0.852 0.553 0.580 1e-114
Q2QYF3660 Protein SCARECROW 2 OS=Or no no 0.852 0.560 0.569 1e-111
A2ZHL0660 Protein SCARECROW 2 OS=Or N/A no 0.852 0.560 0.569 1e-111
A2ZAX5659 Protein SCARECROW 1 OS=Or N/A no 0.852 0.561 0.569 1e-110
Q8S4W7590 DELLA protein GAI1 OS=Vit no no 0.820 0.603 0.355 3e-54
>sp|Q9FHZ1|SCL23_ARATH Scarecrow-like protein 23 OS=Arabidopsis thaliana GN=SCL23 PE=1 SV=1 Back     alignment and function desciption
 Score =  525 bits (1352), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/429 (64%), Positives = 322/429 (75%), Gaps = 36/429 (8%)

Query: 18  MKSKRVDRDDDDDNPNGDPSRAVAKRANVIEQEQKLQEQEEEAEQHDVVVMEGESAGLRL 77
           M +KR+DRD    +   DPS A          +++++  EE  E          +A ++L
Sbjct: 1   MTTKRIDRDLPSSD---DPSSA----------KRRIEFPEETLENDG-------AAAIKL 40

Query: 78  LGLLLQCAECVAMDNLDDATDLLPEISELSSPFVSSPERVGAYFAHALQARVVSSCL-GT 136
           L LLLQCAE VA D+L +A+ LL EISE+ SPF SSPERV AYFA ALQ RV+SS L G 
Sbjct: 41  LSLLLQCAEYVATDHLREASTLLSEISEICSPFGSSPERVVAYFAQALQTRVISSYLSGA 100

Query: 137 YSPLTTKSLTLSQSQKIFNALQSYNSICPLIKFSHFTANQAIFQALDGADCVHIIDLDIM 196
            SPL+ K LT+ QSQKIF+ALQ+YNS+ PLIKFSHFTANQAIFQALDG D VHIIDLD+M
Sbjct: 101 CSPLSEKPLTVVQSQKIFSALQTYNSVSPLIKFSHFTANQAIFQALDGEDSVHIIDLDVM 160

Query: 197 QGLQWPGLFHILVSRSKKIRSMRITGFGSSSE-------RLADFAMSLGLPFDFNPLEGK 249
           QGLQWP LFHIL SR +K+RS+RITGFGSSS+       RLADFA SL LPF+F+P+EG 
Sbjct: 161 QGLQWPALFHILASRPRKLRSIRITGFGSSSDLLASTGRRLADFASSLNLPFEFHPIEGI 220

Query: 250 IGNIIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRMLTLLRPKLITIVEQDLSH-- 307
           IGN+ID SQL  R GE +VVHWM H LYD+TG++L TL +L  L+P LIT+VEQ+LS+  
Sbjct: 221 IGNLIDPSQLATRQGEAVVVHWMQHRLYDVTGNNLETLEILRRLKPNLITVVEQELSYDD 280

Query: 308 GGSFLGRFVEALHYYSALFDALGDGLGADSIERHTVEQQLFGCEIRNIVAVGGPKRTGEV 367
           GGSFLGRFVEALHYYSALFDALGDGLG +S ER TVEQ + G EIRNIVA GG +R    
Sbjct: 281 GGSFLGRFVEALHYYSALFDALGDGLGEESGERFTVEQIVLGTEIRNIVAHGGGRR---- 336

Query: 368 KVERWGEELKRVGFRPVSLSGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTA 427
           K  +W EEL RVGFRPVSL GNPA QA LLLGM PW GYTLVEENG L+LGWKDLSLLTA
Sbjct: 337 KRMKWKEELSRVGFRPVSLRGNPATQAGLLLGMLPWNGYTLVEENGTLRLGWKDLSLLTA 396

Query: 428 SAW--QPSD 434
           SAW  QP D
Sbjct: 397 SAWKSQPFD 405
Probable transcription factor involved in plant development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9M384|SCR_ARATH Protein SCARECROW OS=Arabidopsis thaliana GN=SCR PE=1 SV=1 Back     alignment and function description
>sp|Q2Z2E9|SCR_IPONI Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1 Back     alignment and function description
>sp|Q9AVK4|SCR_PEA Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=1 Back     alignment and function description
>sp|Q2RB59|SCR1_ORYSJ Protein SCARECROW 1 OS=Oryza sativa subsp. japonica GN=SCR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FUZ7|SCR_MAIZE Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1 Back     alignment and function description
>sp|Q2QYF3|SCR2_ORYSJ Protein SCARECROW 2 OS=Oryza sativa subsp. japonica GN=SCR2 PE=2 SV=1 Back     alignment and function description
>sp|A2ZHL0|SCR2_ORYSI Protein SCARECROW 2 OS=Oryza sativa subsp. indica GN=SCR2 PE=3 SV=2 Back     alignment and function description
>sp|A2ZAX5|SCR1_ORYSI Protein SCARECROW 1 OS=Oryza sativa subsp. indica GN=SCR1 PE=3 SV=2 Back     alignment and function description
>sp|Q8S4W7|GAI1_VITVI DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query434
383866657431 GRAS family protein, partial [Dimocarpus 0.972 0.979 0.823 0.0
302399043449 SCL domain class transcription factor [M 0.983 0.951 0.763 0.0
388497920451 unknown [Medicago truncatula] 0.990 0.953 0.737 0.0
356538516442 PREDICTED: scarecrow-like protein 23-lik 0.983 0.966 0.766 0.0
356543956445 PREDICTED: scarecrow-like protein 23-lik 0.979 0.955 0.75 1e-180
449460008444 PREDICTED: scarecrow-like protein 23-lik 0.983 0.961 0.731 1e-179
224089817444 GRAS family transcription factor [Populu 0.965 0.943 0.721 1e-179
255574550442 DELLA protein RGA, putative [Ricinus com 0.811 0.796 0.875 1e-178
224139582413 GRAS family transcription factor [Populu 0.930 0.978 0.798 1e-178
359475692442 PREDICTED: scarecrow-like protein 23-lik 0.976 0.959 0.765 1e-177
>gi|383866657|gb|AFH54530.1| GRAS family protein, partial [Dimocarpus longan] gi|448278876|gb|AGE44290.1| GRAS4 protein [Dimocarpus longan] Back     alignment and taxonomy information
 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/443 (82%), Positives = 391/443 (88%), Gaps = 21/443 (4%)

Query: 1   MLQSLVVPQSPINSST--AMKSKRVDRDDDDDNPNGDPSRAVAKRANVIEQEQKLQEQEE 58
           MLQSLV PQS INS+T  AMK+KR+DR++DD + +    R            ++ QE+  
Sbjct: 1   MLQSLV-PQSSINSTTSSAMKTKRLDRENDDASDDRSSKRP-----------KETQEEHV 48

Query: 59  EAEQHDVVVMEGESAGLRLLGLLLQCAECVAMDNLDDATDLLPEISELSSPFVSSPERVG 118
           +  +  VVVME ES GLRLLGLLLQCAECVAMDNL DAT+LLPEISELSSPF SSPERVG
Sbjct: 49  QVVEEQVVVMEEESTGLRLLGLLLQCAECVAMDNLHDATELLPEISELSSPFGSSPERVG 108

Query: 119 AYFAHALQARVVSSCLGTYSPLTTKSLTLSQSQKIFNALQSYNSICPLIKFSHFTANQAI 178
           AYFAHALQARVVSSCLG+YSPL TKSLTLSQSQKIFNALQSYNSICPLIKFSHFTANQAI
Sbjct: 109 AYFAHALQARVVSSCLGSYSPLATKSLTLSQSQKIFNALQSYNSICPLIKFSHFTANQAI 168

Query: 179 FQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSE-------RLA 231
           FQAL+G DCVH+IDLDIMQGLQWPGLFHIL SRSKKIRSMR+TGFGSSSE       RLA
Sbjct: 169 FQALEGEDCVHVIDLDIMQGLQWPGLFHILASRSKKIRSMRVTGFGSSSELLESTGRRLA 228

Query: 232 DFAMSLGLPFDFNPLEGKIGNIIDVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRMLT 291
           DFA SLGLPF+F PLEGKIGN+ D+SQLGV+P E IVVHWMHHCLYDITGSDL TLR+LT
Sbjct: 229 DFATSLGLPFEFQPLEGKIGNMTDLSQLGVKPSEAIVVHWMHHCLYDITGSDLATLRLLT 288

Query: 292 LLRPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDGLGADSIERHTVEQQLFGCE 351
           LLRPKLIT VEQDLSH GSFLGRFVEALHYYSALFDALGD LGADS++RHTVEQQLFGCE
Sbjct: 289 LLRPKLITTVEQDLSHAGSFLGRFVEALHYYSALFDALGDKLGADSVDRHTVEQQLFGCE 348

Query: 352 IRNIVAVGGPKRTGEVKVERWGEELKRVGFRPVSLSGNPAAQASLLLGMFPWKGYTLVEE 411
           IRNIVAVGGPKRTGEVKVERWGEEL+RVGF+PVSLSGNPAAQASLLLGMFPWKGYTLVEE
Sbjct: 349 IRNIVAVGGPKRTGEVKVERWGEELRRVGFKPVSLSGNPAAQASLLLGMFPWKGYTLVEE 408

Query: 412 NGCLKLGWKDLSLLTASAWQPSD 434
           NGCLKLGWKDLSLLTASAWQPSD
Sbjct: 409 NGCLKLGWKDLSLLTASAWQPSD 431

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302399043|gb|ADL36816.1| SCL domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|388497920|gb|AFK37026.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356538516|ref|XP_003537749.1| PREDICTED: scarecrow-like protein 23-like [Glycine max] Back     alignment and taxonomy information
>gi|356543956|ref|XP_003540424.1| PREDICTED: scarecrow-like protein 23-like [Glycine max] Back     alignment and taxonomy information
>gi|449460008|ref|XP_004147738.1| PREDICTED: scarecrow-like protein 23-like [Cucumis sativus] gi|449519549|ref|XP_004166797.1| PREDICTED: scarecrow-like protein 23-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224089817|ref|XP_002308822.1| GRAS family transcription factor [Populus trichocarpa] gi|222854798|gb|EEE92345.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255574550|ref|XP_002528186.1| DELLA protein RGA, putative [Ricinus communis] gi|223532398|gb|EEF34193.1| DELLA protein RGA, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224139582|ref|XP_002323179.1| GRAS family transcription factor [Populus trichocarpa] gi|222867809|gb|EEF04940.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359475692|ref|XP_003631733.1| PREDICTED: scarecrow-like protein 23-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query434
TAIR|locus:2165685405 AT5G41920 "AT5G41920" [Arabido 0.801 0.859 0.711 1.7e-128
TAIR|locus:2080345653 SCR "SCARECROW" [Arabidopsis t 0.804 0.534 0.602 4.6e-112
TAIR|locus:2020487445 LAS "AT1G55580" [Arabidopsis t 0.488 0.476 0.366 2.8e-51
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.831 0.659 0.343 9.5e-50
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.808 0.686 0.349 3.3e-47
TAIR|locus:2157477523 RGL3 "RGA-like protein 3" [Ara 0.778 0.646 0.358 6.2e-46
TAIR|locus:2005516587 RGA1 "REPRESSOR OF GA1-3 1" [A 0.820 0.606 0.324 1.2e-44
TAIR|locus:2006747533 GAI "GIBBERELLIC ACID INSENSIT 0.822 0.669 0.322 2.8e-43
TAIR|locus:2008086482 SCL3 "AT1G50420" [Arabidopsis 0.479 0.431 0.328 3e-43
TAIR|locus:2015243658 AT1G63100 "AT1G63100" [Arabido 0.730 0.481 0.343 4.1e-43
TAIR|locus:2165685 AT5G41920 "AT5G41920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
 Identities = 259/364 (71%), Positives = 292/364 (80%)

Query:    83 QCAECVAMDNLDDATDLLPEISELSSPFVSSPERVGAYFAHALQARVVSSCL-GTYSPLT 141
             QCAE VA D+L +A+ LL EISE+ SPF SSPERV AYFA ALQ RV+SS L G  SPL+
Sbjct:    46 QCAEYVATDHLREASTLLSEISEICSPFGSSPERVVAYFAQALQTRVISSYLSGACSPLS 105

Query:   142 TKSLTLSQSQKIFNALQSYNSICPLIKFSHFTANQAIFQALDGADCVHIIDLDIMQGLQW 201
              K LT+ QSQKIF+ALQ+YNS+ PLIKFSHFTANQAIFQALDG D VHIIDLD+MQGLQW
Sbjct:   106 EKPLTVVQSQKIFSALQTYNSVSPLIKFSHFTANQAIFQALDGEDSVHIIDLDVMQGLQW 165

Query:   202 PGLFHILVSRSKKIRSMRITGFGSSSE-------RLADFAMSLGLPFDFNPLEGKIGNII 254
             P LFHIL SR +K+RS+RITGFGSSS+       RLADFA SL LPF+F+P+EG IGN+I
Sbjct:   166 PALFHILASRPRKLRSIRITGFGSSSDLLASTGRRLADFASSLNLPFEFHPIEGIIGNLI 225

Query:   255 DVSQLGVRPGETIVVHWMHHCLYDITGSDLGTLRMLTLLRPKLITIVEQDLSH--GGSFL 312
             D SQL  R GE +VVHWM H LYD+TG++L TL +L  L+P LIT+VEQ+LS+  GGSFL
Sbjct:   226 DPSQLATRQGEAVVVHWMQHRLYDVTGNNLETLEILRRLKPNLITVVEQELSYDDGGSFL 285

Query:   313 GRFVEALHYYSALFDALGDGLGADSIERHTVEQQLFGCEIRNIVAVGGPKRTGEVKVERW 372
             GRFVEALHYYSALFDALGDGLG +S ER TVEQ + G EIRNIVA GG +R    K  +W
Sbjct:   286 GRFVEALHYYSALFDALGDGLGEESGERFTVEQIVLGTEIRNIVAHGGGRR----KRMKW 341

Query:   373 GEELKRVGFRPVSLSGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAW-- 430
              EEL RVGFRPVSL GNPA QA LLLGM PW GYTLVEENG L+LGWKDLSLLTASAW  
Sbjct:   342 KEELSRVGFRPVSLRGNPATQAGLLLGMLPWNGYTLVEENGTLRLGWKDLSLLTASAWKS 401

Query:   431 QPSD 434
             QP D
Sbjct:   402 QPFD 405
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2080345 SCR "SCARECROW" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020487 LAS "AT1G55580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008086 SCL3 "AT1G50420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015243 AT1G63100 "AT1G63100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FHZ1SCL23_ARATHNo assigned EC number0.64800.90550.9703yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-151
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  432 bits (1113), Expect = e-151
 Identities = 166/371 (44%), Positives = 217/371 (58%), Gaps = 17/371 (4%)

Query: 77  LLGLLLQCAECVAMDNLDDATDLLPEISELSSPFVSSPERVGAYFAHALQARVVSSCLGT 136
           L+ LLL CAE V+  +L  A  +L  +++L+SP     +R+ AYF  AL AR+  S    
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSI 60

Query: 137 YSPLTTKSLTLSQSQKIFNALQSYNSICPLIKFSHFTANQAIFQALDGADCVHIIDLDIM 196
           YS L     T S S ++  A + +  + P +KF HFTANQAI +A +G + VHIID DI 
Sbjct: 61  YSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDIG 120

Query: 197 QGLQWPGLFHILVSRSKKIRSMRITGFGSSS-----------ERLADFAMSLGLPFDFNP 245
           QGLQWP L   L SR      +RITG GS             +RLA FA SLG+PF+FNP
Sbjct: 121 QGLQWPSLIQALASRPGGPPHLRITGIGSPQFSSAEELEETGDRLAQFADSLGVPFEFNP 180

Query: 246 LEGKIGNIIDVSQLGVRPGETIVVHWMH--HCLYDITGS--DLGTLRMLTLLRPKLITIV 301
           L  K    +D+  L VRPGE + V+ +   H L D + S      LR++  L PK++T+V
Sbjct: 181 LVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESPTFLRLVKSLNPKVVTLV 240

Query: 302 EQDLSHG-GSFLGRFVEALHYYSALFDALGDGLGADSIERHTVEQQLFGCEIRNIVAVGG 360
           EQ+ +H    FL RFVEALHYYSALFD+L   L  DS ER  VE++L G EI N+VA  G
Sbjct: 241 EQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNVVACEG 300

Query: 361 PKRTGEVKV-ERWGEELKRVGFRPVSLSGNPAAQASLLLGMFPWKGYTLVEENGCLKLGW 419
            +R    +   +W E ++R GFRPV LS     QA LLL ++   GY + E+NG L LGW
Sbjct: 301 AERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYVDGYRVEEDNGSLVLGW 360

Query: 420 KDLSLLTASAW 430
           K   L+ ASAW
Sbjct: 361 KGRPLVAASAW 371

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 434
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.16
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 95.08
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 94.82
TIGR00740239 methyltransferase, putative. A simple BLAST search 94.25
PRK06202232 hypothetical protein; Provisional 91.81
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 91.77
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 90.94
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 90.24
PRK11207197 tellurite resistance protein TehB; Provisional 88.7
PF09243274 Rsm22: Mitochondrial small ribosomal subunit Rsm22 87.94
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 87.41
PLN02336 475 phosphoethanolamine N-methyltransferase 87.15
PLN02233261 ubiquinone biosynthesis methyltransferase 87.11
PRK12335287 tellurite resistance protein TehB; Provisional 86.75
TIGR02072240 BioC biotin biosynthesis protein BioC. This enzyme 85.79
PRK01683258 trans-aconitate 2-methyltransferase; Provisional 85.46
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 85.45
PRK00107187 gidB 16S rRNA methyltransferase GidB; Reviewed 83.77
TIGR00138181 gidB 16S rRNA methyltransferase GidB. GidB (glucos 82.51
PRK11036255 putative S-adenosyl-L-methionine-dependent methylt 81.44
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 80.23
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=4.7e-109  Score=846.74  Aligned_cols=354  Identities=47%  Similarity=0.778  Sum_probs=331.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCcchhHHHHHHHHHHHHhhhCCCCCCCCCccccccccchHHHHHH
Q 013903           77 LLGLLLQCAECVAMDNLDDATDLLPEISELSSPFVSSPERVGAYFAHALQARVVSSCLGTYSPLTTKSLTLSQSQKIFNA  156 (434)
Q Consensus        77 L~~LLl~CAeAV~~gd~~~A~~lL~~l~~~aSp~Gd~~qRla~yFa~AL~~Rl~~~~~g~~~~l~~~~~~~~~~~~~~~A  156 (434)
                      |++||++||+||+.||.+.|+.+|++|++++||+|||+||||+||++||.+|+.+++++.|.++.....+.....+...|
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a   80 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA   80 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999998888888775554333345678899


Q ss_pred             HHHHHhcCCCccchhHhHhHHHHhhcCCCCeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCC----hH----
Q 013903          157 LQSYNSICPLIKFSHFTANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSS----SE----  228 (434)
Q Consensus       157 ~~~f~~~sP~~kfa~~tANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~----~~----  228 (434)
                      |+.||+.|||+||+|||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||+++    .+    
T Consensus        81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~  160 (374)
T PF03514_consen   81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE  160 (374)
T ss_pred             HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999983    22    


Q ss_pred             ---HHHHHHHHcCCceEEeee-ccCccccccccccCCCCCceEEEecc---cccccc---cCCChHHHHHHHHhcCCCEE
Q 013903          229 ---RLADFAMSLGLPFDFNPL-EGKIGNIIDVSQLGVRPGETIVVHWM---HHCLYD---ITGSDLGTLRMLTLLRPKLI  298 (434)
Q Consensus       229 ---rL~~fA~slgvpFeF~~V-~~~~e~l~~~~~L~~~~~EaLaVN~~---~h~l~~---~~~~~~~~L~~ir~L~P~vv  298 (434)
                         ||.+||+++||||||++| ..+++++ ++++|++++||+|||||+   ||++.+   ..++++.||+.||+|+|+||
T Consensus       161 ~g~rL~~fA~~lgv~fef~~v~~~~~e~l-~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vv  239 (374)
T PF03514_consen  161 TGRRLAEFARSLGVPFEFHPVVVESLEDL-DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVV  239 (374)
T ss_pred             HHHHHHHHHHHcCccEEEEecccCchhhC-CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEE
Confidence               999999999999999995 6789999 899999999999999985   444322   23468999999999999999


Q ss_pred             EEEecCCCCCCC-hhHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHhhhhhhhHHhhCCCCcccccc-cccHHHHH
Q 013903          299 TIVEQDLSHGGS-FLGRFVEALHYYSALFDALGDGLGADSIERHTVEQQLFGCEIRNIVAVGGPKRTGEVK-VERWGEEL  376 (434)
Q Consensus       299 v~vE~ea~~n~~-F~~RF~eaL~yYsalFDsLea~l~~~~~eR~~vE~~~lg~eI~niVAcEG~~R~ER~e-~~~W~~rm  376 (434)
                      |++|+|+|||+| |++||.|||+||+++|||||+++|+++++|..+|+.+||++|+|||||||.+|+|||| +++|+.||
T Consensus       240 v~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r~  319 (374)
T PF03514_consen  240 VLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRRM  319 (374)
T ss_pred             EEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHHH
Confidence            999999999996 9999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             hcCCCeeccCCChHHHHHHHHhccCCCCCcEEEEeCCEEEEEECCceEEEEEeee
Q 013903          377 KRVGFRPVSLSGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ  431 (434)
Q Consensus       377 ~~AGF~~v~ls~~~~~qa~~ll~~~~~~gy~v~e~~~~L~LgWk~~pL~s~SaW~  431 (434)
                      .+|||+++|+|++++.|||+||++|+++||+|++++|||+|||||+||+++||||
T Consensus       320 ~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  320 RRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             HhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            9999999999999999999999999889999999999999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>TIGR02072 BioC biotin biosynthesis protein BioC Back     alignment and domain information
>PRK01683 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed Back     alignment and domain information
>TIGR00138 gidB 16S rRNA methyltransferase GidB Back     alignment and domain information
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 61/356 (17%), Positives = 104/356 (29%), Gaps = 107/356 (30%)

Query: 10  SPINSSTAMKSKRVDRDDDDDNPNGDPSRAVAKRANV--IEQEQKLQEQEEEAEQHDVVV 67
           SPI +     S       +  +   + ++  AK  NV  ++   KL++   E      V+
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKNVL 154

Query: 68  MEG-----ES--AGLRLLGLLLQCAEC-----VAMDNLDDATDLL-----------PEIS 104
           ++G     ++  A    L   +QC        + + N +    +L           P  +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 105 ELSSPFVSSPERVG---AYFAHALQARVVSSCLGTYSPLTTKSLTLS--QSQKIFNALQS 159
             S    +   R+    A     L+++   +CL          L L   Q+ K +NA   
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----------LVLLNVQNAKAWNA--- 261

Query: 160 YNSICP-LIKFSHFTANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSM 218
           +N  C  L+     T  + +   L  A   HI        L                   
Sbjct: 262 FNLSCKILLT----TRFKQVTDFLSAATTTHISLDHHSMTL------------------- 298

Query: 219 RITGFGSSSERLADFAMSLGLPFDFNPLEGKIGNIIDVSQLG--VRPGETIVVHWMHHCL 276
                 +  E  +     L       P E    N   +S +   +R G     +W H   
Sbjct: 299 ------TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH--- 349

Query: 277 YDITGSDLGTLRMLTLLRPKLITIVEQDLSHGGSFLGRFVEAL--HYYSALFDALG 330
                          +   KL TI+E             +  L    Y  +FD L 
Sbjct: 350 ---------------VNCDKLTTIIE-----------SSLNVLEPAEYRKMFDRLS 379
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query434
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.09
3dh0_A219 SAM dependent methyltransferase; cystal structure, 95.57
3dtn_A234 Putative methyltransferase MM_2633; structural gen 94.27
2r3s_A335 Uncharacterized protein; methyltransferase domain, 94.14
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 94.12
3dp7_A363 SAM-dependent methyltransferase; structural genomi 93.89
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 93.77
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 93.69
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 93.34
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 93.17
3r0q_C376 Probable protein arginine N-methyltransferase 4.2; 92.59
1vl5_A260 Unknown conserved protein BH2331; putative methylt 92.19
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 91.71
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 91.67
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 91.51
3u81_A221 Catechol O-methyltransferase; neurotransmitter deg 91.45
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 90.96
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 90.82
3lcv_B281 Sisomicin-gentamicin resistance methylase SGM; ant 90.47
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 90.29
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 90.24
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 90.23
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 90.18
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 89.85
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 89.71
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 89.31
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 89.07
3hnr_A220 Probable methyltransferase BT9727_4108; structural 89.06
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 88.77
3m70_A286 Tellurite resistance protein TEHB homolog; structu 88.46
3f4k_A257 Putative methyltransferase; structural genomics, P 88.24
3frh_A253 16S rRNA methylase; methyltransferase domain, heli 87.54
1xxl_A239 YCGJ protein; structural genomics, protein structu 87.14
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 87.08
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 87.05
3q7e_A349 Protein arginine N-methyltransferase 1; HET: SAH; 86.79
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 86.5
3p9n_A189 Possible methyltransferase (methylase); RV2966C, a 86.49
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 86.24
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 85.52
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 84.68
2y1w_A348 Histone-arginine methyltransferase CARM1; histone 84.54
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 84.2
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 84.14
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 84.06
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 83.97
3hm2_A178 Precorrin-6Y C5,15-methyltransferase; alpha-beta-s 83.94
1wzn_A252 SAM-dependent methyltransferase; structural genomi 83.46
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 83.02
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 82.95
2p35_A259 Trans-aconitate 2-methyltransferase; SAM dependent 82.8
3lcc_A235 Putative methyl chloride transferase; halide methy 82.13
2yxd_A183 Probable cobalt-precorrin-6Y C(15)-methyltransfer 81.96
1dus_A194 MJ0882; hypothetical protein, methanococcus jannas 81.8
3bkw_A243 MLL3908 protein, S-adenosylmethionine dependent me 81.77
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 81.42
2yqz_A263 Hypothetical protein TTHA0223; RNA methyltransfera 81.37
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 81.2
1yzh_A214 TRNA (guanine-N(7)-)-methyltransferase; alpha-beta 80.61
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.09  E-value=0.0045  Score=59.25  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=61.2

Q ss_pred             eeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHH---HHHHHcCC--ceEEeeeccCccccccccccCC
Q 013903          187 CVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLA---DFAMSLGL--PFDFNPLEGKIGNIIDVSQLGV  261 (434)
Q Consensus       187 ~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~---~fA~slgv--pFeF~~V~~~~e~l~~~~~L~~  261 (434)
                      .-+|+|+|.|.|.    +...|+.+- ++|..+||||+.+.+.|.   +.++..|.  +.+|.  ..++.++      ..
T Consensus        71 ~~~vLDlGcGtG~----~~~~la~~~-~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~--~~D~~~~------~~  137 (261)
T 4gek_A           71 GTQVYDLGCSLGA----ATLSVRRNI-HHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVI--EGDIRDI------AI  137 (261)
T ss_dssp             TCEEEEETCTTTH----HHHHHHHTC-CSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEE--ESCTTTC------CC
T ss_pred             CCEEEEEeCCCCH----HHHHHHHhc-CCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEe--ecccccc------cc
Confidence            3479999999985    445565543 346789999999987443   33444454  44443  3333333      33


Q ss_pred             CCCceEEEecccccccccCCChHHHHHHH-HhcCCCEEEE-EecC
Q 013903          262 RPGETIVVHWMHHCLYDITGSDLGTLRML-TLLRPKLITI-VEQD  304 (434)
Q Consensus       262 ~~~EaLaVN~~~h~l~~~~~~~~~~L~~i-r~L~P~vvv~-vE~e  304 (434)
                      .+-.+++.|+.+|.+..  ..+..+|+.| +.|+|.-.++ .|.-
T Consensus       138 ~~~d~v~~~~~l~~~~~--~~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          138 ENASMVVLNFTLQFLEP--SERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             CSEEEEEEESCGGGSCH--HHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             cccccceeeeeeeecCc--hhHhHHHHHHHHHcCCCcEEEEEecc
Confidence            34456666755443321  2345677765 7799987554 4543
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Back     alignment and structure
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Back     alignment and structure
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Back     alignment and structure
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query434
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 96.69
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 96.17
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 95.77
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 94.48
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 93.34
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 92.6
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 92.26
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 92.11
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 90.84
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 90.08
d2avna1246 Hypothetical methyltransferase TM1389 {Thermotoga 89.77
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 89.77
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 89.49
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 89.27
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 89.0
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 88.62
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 88.32
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 87.89
d1g6q1_328 Arginine methyltransferase, HMT1 {Baker's yeast (S 84.87
d2fyta1311 Protein arginine N-methyltransferase 3, PRMT3 {Hum 84.32
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 83.73
d1oria_316 Protein arginine N-methyltransferase 1, PRMT1 {Rat 83.34
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 82.2
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 80.52
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=96.69  E-value=0.027  Score=49.60  Aligned_cols=103  Identities=12%  Similarity=0.172  Sum_probs=60.1

Q ss_pred             CeeEEEEcccCCccccHHHHHHHhcCCCCCceEEEEeecCChHHHHHH---HHHcCCceEEeeeccCccccccccccCCC
Q 013903          186 DCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGSSSERLADF---AMSLGLPFDFNPLEGKIGNIIDVSQLGVR  262 (434)
Q Consensus       186 ~~VHIIDfgI~~G~QWpsLiqaLa~R~~gPP~LRITgI~~~~~rL~~f---A~slgvpFeF~~V~~~~e~l~~~~~L~~~  262 (434)
                      ..-||+|+|.|.|.    +...|+.. -..|..+||||+.+.+.|...   ++..+....++.+.....++      ...
T Consensus        39 ~~~~vLDlGCGtG~----~~~~l~~~-~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~------~~~  107 (225)
T d1im8a_          39 ADSNVYDLGCSRGA----ATLSARRN-INQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV------EIK  107 (225)
T ss_dssp             TTCEEEEESCTTCH----HHHHHHHT-CCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC------CCC
T ss_pred             CCCEEEEeccchhh----HHHHHHHh-hcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc------ccc
Confidence            34589999999885    33444433 224678999999998744333   34456555555544333232      222


Q ss_pred             CCceEEEecccccccccCCChHHHHHHH-HhcCCCEEEEE
Q 013903          263 PGETIVVHWMHHCLYDITGSDLGTLRML-TLLRPKLITIV  301 (434)
Q Consensus       263 ~~EaLaVN~~~h~l~~~~~~~~~~L~~i-r~L~P~vvv~v  301 (434)
                      +...++.+..+|.+.  ......+|+.| +.|+|.-.++.
T Consensus       108 ~~d~i~~~~~l~~~~--~~d~~~~l~~i~~~LkpgG~li~  145 (225)
T d1im8a_         108 NASMVILNFTLQFLP--PEDRIALLTKIYEGLNPNGVLVL  145 (225)
T ss_dssp             SEEEEEEESCGGGSC--GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             cceeeEEeeeccccC--hhhHHHHHHHHHHhCCCCceeec
Confidence            334444443333222  12456778766 78999986665
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure