Citrus Sinensis ID: 013911

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----

MYCAFKHHTTVINISLFWVVTLLSRFDAIQKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFWSFKGDTRSEEFYSLPFNLNKYFPSV

cccccccccEEEcccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHcHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccHHHHHHHHHHHHHcccccccccccccccEEEEEccccEEHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHccccccccccHHHHHHHHHHccccHHHHHHHccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccccccccccccccccccccccc

ccccccccccEccccEEEEHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHcccccccccccccHHHHHHEEEHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcEEEcccccccEEEEEHHHHHHHHcHHHHHHcccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHcccHHHHcHcccccccccccccccccccccccccc

mycafkhhtTVINISLFWVVTLLSRFDAIQKFKRTMRAIQGSLIVASTLQIVLGFSGLWrnvtrflsplsvvplislvgfglyefgfpgvakcveigLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVggayndaapktqascrtdraglidaapwirvpwpfqwgapsfdAGEAFAMMMASFVALVESTGAFFAVARyasatpmppsvlsrgvgwqGVGILLSGlfgtvngtsVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKfgavfasipAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGFSIFIglsvpqyfneytaingfgpvhtsgrwfndmvnvpfssepfvAGCVAFFldntlhkkdgqvrkdrgrhwwdkfwsfkgdtrseefyslpfnlnkyfpsv

MYCAFKHHTTVINISLFWVVTLLSRFDAIQKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFlsplsvvplislvGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFWSFKGDTRSEEFYSLPFNLNKYFPSV

*YCAFKHHTTVINISLFWVVTLLSRFDAIQKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFWSFKGDTRSEEFYSLPFNLNKY****

iiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo

oooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		434	2.2.26 [Sep-21-2011]
Q27GI3		532	Nucleobase-ascorbate tran	yes	no	0.940	0.766	0.862	0.0
Q8RWE9		528	Nucleobase-ascorbate tran	no	no	0.940	0.772	0.803	0.0
Q0WPE9		538	Nucleobase-ascorbate tran	no	no	0.942	0.760	0.757	0.0
Q8VZQ5		539	Nucleobase-ascorbate tran	no	no	0.953	0.768	0.688	1e-172
Q94C70		524	Nucleobase-ascorbate tran	no	no	0.940	0.778	0.603	1e-142
P93039		526	Nucleobase-ascorbate tran	no	no	0.928	0.766	0.617	1e-140
Q41760		527	Nucleobase-ascorbate tran	N/A	no	0.940	0.774	0.573	1e-138
O04472		541	Putative nucleobase-ascor	no	no	0.933	0.748	0.536	1e-134
Q9SHZ3		520	Nucleobase-ascorbate tran	no	no	0.923	0.771	0.559	1e-130
Q8GZD4		551	Nucleobase-ascorbate tran	no	no	0.974	0.767	0.487	1e-114

>sp\|Q27GI3\|NAT6_ARATH Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2	Back alignment and function desciption

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/408 (86%), Positives = 383/408 (93%)

Query: 27  DAIQKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFG 86
           + I +F+R MRA QG+LIVASTLQ++LGFSGLWRNV RFLSP+S VPL+ LVGFGLYEFG
Sbjct: 125 NPIDRFERIMRATQGALIVASTLQMILGFSGLWRNVVRFLSPISAVPLVGLVGFGLYEFG 184

Query: 87  FPGVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGA 146
           FPGVAKC+EIGLP+L+I+VF+SQYLPHVIK GKN+FDRFAVIF+VVIVWIYAHLLTVGGA
Sbjct: 185 FPGVAKCIEIGLPELLILVFVSQYLPHVIKSGKNVFDRFAVIFAVVIVWIYAHLLTVGGA 244

Query: 147 YNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTG 206
           YN AAP TQ SCRTDRAG+I AAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTG
Sbjct: 245 YNGAAPTTQTSCRTDRAGIIGAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTG 304

Query: 207 AFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSR 266
           AF AV+RYASAT +PPS+LSRG+GWQGV IL+SGLFGT  G+SVSVENAGLLALTRVGSR
Sbjct: 305 AFVAVSRYASATMLPPSILSRGIGWQGVAILISGLFGTGAGSSVSVENAGLLALTRVGSR 364

Query: 267 RVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRV 326
           RVVQI+AGFMIFFS+LGKFGAVFASIPAPI+AALYCLFFAYVGAGGLSFLQFCNLNSFR 
Sbjct: 365 RVVQIAAGFMIFFSILGKFGAVFASIPAPIIAALYCLFFAYVGAGGLSFLQFCNLNSFRT 424

Query: 327 KFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLD 386
           KFILGFS+F+GLS+PQYFNEYTAI G+GPVHT  RWFNDMVNVPFSSEPFVAG VAFFLD
Sbjct: 425 KFILGFSVFLGLSIPQYFNEYTAIKGYGPVHTGARWFNDMVNVPFSSEPFVAGSVAFFLD 484

Query: 387 NTLHKKDGQVRKDRGRHWWDKFWSFKGDTRSEEFYSLPFNLNKYFPSV 434
           NTLHKKD  +RKDRG+HWWDKF SFKGDTRSEEFYSLPFNLNKYFPSV
Sbjct: 485 NTLHKKDSSIRKDRGKHWWDKFRSFKGDTRSEEFYSLPFNLNKYFPSV 532

Arabidopsis thaliana (taxid: 3702)

>sp\|Q8RWE9\|NAT5_ARATH Nucleobase-ascorbate transporter 5 OS=Arabidopsis thaliana GN=NAT5 PE=2 SV=1	Back alignment and function description

>sp\|Q0WPE9\|NAT7_ARATH Nucleobase-ascorbate transporter 7 OS=Arabidopsis thaliana GN=NAT7 PE=2 SV=2	Back alignment and function description

>sp\|Q8VZQ5\|NAT8_ARATH Nucleobase-ascorbate transporter 8 OS=Arabidopsis thaliana GN=NAT8 PE=2 SV=1	Back alignment and function description

>sp\|Q94C70\|NAT2_ARATH Nucleobase-ascorbate transporter 2 OS=Arabidopsis thaliana GN=NAT2 PE=2 SV=2	Back alignment and function description

>sp\|P93039\|NAT4_ARATH Nucleobase-ascorbate transporter 4 OS=Arabidopsis thaliana GN=NAT4 PE=2 SV=2	Back alignment and function description

>sp\|Q41760\|LPE1_MAIZE Nucleobase-ascorbate transporter LPE1 OS=Zea mays GN=LPE1 PE=1 SV=2	Back alignment and function description

>sp\|O04472\|NAT10_ARATH Putative nucleobase-ascorbate transporter 10 OS=Arabidopsis thaliana GN=NAT10 PE=3 SV=2	Back alignment and function description

>sp\|Q9SHZ3\|NAT1_ARATH Nucleobase-ascorbate transporter 1 OS=Arabidopsis thaliana GN=NAT1 PE=2 SV=1	Back alignment and function description

>sp\|Q8GZD4\|NAT3_ARATH Nucleobase-ascorbate transporter 3 OS=Arabidopsis thaliana GN=NAT3 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		434
255540763		531	purine permease, putative [Ricinus commu	0.940	0.768	0.882	0.0
225457114		531	PREDICTED: nucleobase-ascorbate transpor	0.956	0.781	0.866	0.0
224121656		529	nucleobase ascorbate transporter [Populu	0.956	0.784	0.861	0.0
224135763		528	nucleobase ascorbate transporter [Populu	0.940	0.772	0.867	0.0
449440700		530	PREDICTED: nucleobase-ascorbate transpor	0.956	0.783	0.849	0.0
15241994		532	nucleobase-ascorbate transporter 6 [Arab	0.940	0.766	0.862	0.0
356516694		531	PREDICTED: nucleobase-ascorbate transpor	0.956	0.781	0.844	0.0
356508649		531	PREDICTED: nucleobase-ascorbate transpor	0.956	0.781	0.847	0.0
297793879		532	hypothetical protein ARALYDRAFT_496474 [	0.940	0.766	0.860	0.0
356562759		533	PREDICTED: nucleobase-ascorbate transpor	0.940	0.765	0.833	0.0

>gi\|255540763\|ref\|XP_002511446.1\| purine permease, putative [Ricinus communis] gi\|223550561\|gb\|EEF52048.1\| purine permease, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/408 (88%), Positives = 388/408 (95%)

Query: 27  DAIQKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFG 86
           D  ++FK  MRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLS VPL++LVGFGLYE G
Sbjct: 124 DPEERFKSIMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSAVPLVALVGFGLYELG 183

Query: 87  FPGVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGA 146
           FPGVAKCVEIGLP+L+I+VF+SQY+PHVIK  +++FDRFAVIFS+VIVWIYAHLLTVGGA
Sbjct: 184 FPGVAKCVEIGLPELIILVFVSQYMPHVIKSRRHVFDRFAVIFSIVIVWIYAHLLTVGGA 243

Query: 147 YNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTG 206
           YNDAAPKTQ +CRTDRAGLIDAAPWIRVP+PFQWGAPSFDAGEAFAMMMASFVALVESTG
Sbjct: 244 YNDAAPKTQNTCRTDRAGLIDAAPWIRVPYPFQWGAPSFDAGEAFAMMMASFVALVESTG 303

Query: 207 AFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSR 266
           AF AV+RYASATPMPPSVLSRG+GWQGV ILLSGLFGTVN +SVSVENAGLLALTRVGSR
Sbjct: 304 AFIAVSRYASATPMPPSVLSRGIGWQGVAILLSGLFGTVNASSVSVENAGLLALTRVGSR 363

Query: 267 RVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRV 326
           RVVQISAGFMIFFS+LGKFGAVFASIPAPI+AALYCLFFAYVG GGLSFLQFCNLNSFR 
Sbjct: 364 RVVQISAGFMIFFSILGKFGAVFASIPAPIIAALYCLFFAYVGVGGLSFLQFCNLNSFRT 423

Query: 327 KFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLD 386
           KFILGFSIF+GLS+PQYFNEYTAING+GPVHT GRWFND+VNVPFSSE FVAGCVA+FLD
Sbjct: 424 KFILGFSIFLGLSIPQYFNEYTAINGYGPVHTGGRWFNDIVNVPFSSEAFVAGCVAYFLD 483

Query: 387 NTLHKKDGQVRKDRGRHWWDKFWSFKGDTRSEEFYSLPFNLNKYFPSV 434
           NTLH+KD  +RKDRG+HWWDKF SFKGD RSEEFYSLPFNLNKYFPSV
Sbjct: 484 NTLHRKDSSIRKDRGKHWWDKFRSFKGDIRSEEFYSLPFNLNKYFPSV 531

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225457114\|ref\|XP_002283469.1\| PREDICTED: nucleobase-ascorbate transporter 6 [Vitis vinifera] gi\|297733828\|emb\|CBI15075.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224121656\|ref\|XP_002318639.1\| nucleobase ascorbate transporter [Populus trichocarpa] gi\|222859312\|gb\|EEE96859.1\| nucleobase ascorbate transporter [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224135763\|ref\|XP_002322154.1\| nucleobase ascorbate transporter [Populus trichocarpa] gi\|222869150\|gb\|EEF06281.1\| nucleobase ascorbate transporter [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449440700\|ref\|XP_004138122.1\| PREDICTED: nucleobase-ascorbate transporter 6-like [Cucumis sativus] gi\|449477394\|ref\|XP_004155010.1\| PREDICTED: nucleobase-ascorbate transporter 6-like [Cucumis sativus]	Back alignment and taxonomy information

>gi|15241994|ref|NP_201094.1| nucleobase-ascorbate transporter 6 [Arabidopsis thaliana] gi|79600443|ref|NP_851251.2| nucleobase-ascorbate transporter 6 [Arabidopsis thaliana] gi|145323680|ref|NP_001032127.2| nucleobase-ascorbate transporter 6 [Arabidopsis thaliana] gi|122064607|sp|Q27GI3.2|NAT6_ARATH RecName: Full=Nucleobase-ascorbate transporter 6; Short=AtNAT6 gi|21326025|gb|AAM47573.1|AF466198_1 putative permease 1 [Arabidopsis thaliana] gi|10177467|dbj|BAB10858.1| permease 1 [Arabidopsis thaliana] gi|332010285|gb|AED97668.1| nucleobase-ascorbate transporter 6 [Arabidopsis thaliana] gi|332010286|gb|AED97669.1| nucleobase-ascorbate transporter 6 [Arabidopsis thaliana] gi|332010287|gb|AED97670.1| nucleobase-ascorbate transporter 6 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|356516694\|ref\|XP_003527028.1\| PREDICTED: nucleobase-ascorbate transporter 6-like isoform 1 [Glycine max] gi\|356516696\|ref\|XP_003527029.1\| PREDICTED: nucleobase-ascorbate transporter 6-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|356508649\|ref\|XP_003523067.1\| PREDICTED: nucleobase-ascorbate transporter 6-like [Glycine max]	Back alignment and taxonomy information

>gi\|297793879\|ref\|XP_002864824.1\| hypothetical protein ARALYDRAFT_496474 [Arabidopsis lyrata subsp. lyrata] gi\|297310659\|gb\|EFH41083.1\| hypothetical protein ARALYDRAFT_496474 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356562759\|ref\|XP_003549636.1\| PREDICTED: nucleobase-ascorbate transporter 6-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		434
TAIR\|locus:2170783		532	AT5G62890 [Arabidopsis thalian	0.935	0.763	0.844	5.3e-191
TAIR\|locus:2158829		528	AT5G49990 [Arabidopsis thalian	0.940	0.772	0.781	3.9e-179
TAIR\|locus:2202700		538	NAT7 "nucleobase-ascorbate tra	0.940	0.758	0.737	2.5e-168
TAIR\|locus:2194631		539	NAT8 "nucleobase-ascorbate tra	0.953	0.768	0.674	1.4e-157
TAIR\|locus:2031085		526	AT1G49960 [Arabidopsis thalian	0.928	0.766	0.598	1e-132
TAIR\|locus:2040874		524	AT2G34190 [Arabidopsis thalian	0.940	0.778	0.588	1.4e-128
TAIR\|locus:2034104		541	AT1G65550 [Arabidopsis thalian	0.933	0.748	0.521	3.7e-119
TAIR\|locus:2060076		520	AT2G05760 [Arabidopsis thalian	0.923	0.771	0.544	5.4e-118
TAIR\|locus:2066190		551	PDE135 "pigment defective embr	0.974	0.767	0.471	1.3e-107
UNIPROTKB\|B9VMA9		658	SVCT2 "Uncharacterized protein	0.877	0.579	0.352	1.3e-61

TAIR\|locus:2170783 AT5G62890 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1851 (656.6 bits), Expect = 5.3e-191, P = 5.3e-191
 Identities = 343/406 (84%), Positives = 371/406 (91%)

Query:    29 IQKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFXXXXXXXXXXXXXGFGLYEFGFP 88
             I +F+R MRA QG+LIVASTLQ++LGFSGLWRNV RF             GFGLYEFGFP
Sbjct:   127 IDRFERIMRATQGALIVASTLQMILGFSGLWRNVVRFLSPISAVPLVGLVGFGLYEFGFP 186

Query:    89 GVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYN 148
             GVAKC+EIGLP+L+I+VF+SQYLPHVIK GKN+FDRFAVIF+VVIVWIYAHLLTVGGAYN
Sbjct:   187 GVAKCIEIGLPELLILVFVSQYLPHVIKSGKNVFDRFAVIFAVVIVWIYAHLLTVGGAYN 246

Query:   149 DAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAF 208
              AAP TQ SCRTDRAG+I AAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAF
Sbjct:   247 GAAPTTQTSCRTDRAGIIGAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAF 306

Query:   209 FAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRV 268
              AV+RYASAT +PPS+LSRG+GWQGV IL+SGLFGT  G+SVSVENAGLLALTRVGSRRV
Sbjct:   307 VAVSRYASATMLPPSILSRGIGWQGVAILISGLFGTGAGSSVSVENAGLLALTRVGSRRV 366

Query:   269 VQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKF 328
             VQI+AGFMIFFS+LGKFGAVFASIPAPI+AALYCLFFAYVGAGGLSFLQFCNLNSFR KF
Sbjct:   367 VQIAAGFMIFFSILGKFGAVFASIPAPIIAALYCLFFAYVGAGGLSFLQFCNLNSFRTKF 426

Query:   329 ILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNT 388
             ILGFS+F+GLS+PQYFNEYTAI G+GPVHT  RWFNDMVNVPFSSEPFVAG VAFFLDNT
Sbjct:   427 ILGFSVFLGLSIPQYFNEYTAIKGYGPVHTGARWFNDMVNVPFSSEPFVAGSVAFFLDNT 486

Query:   389 LHKKDGQVRKDRGRHWWDKFWSFKGDTRSEEFYSLPFNLNKYFPSV 434
             LHKKD  +RKDRG+HWWDKF SFKGDTRSEEFYSLPFNLNKYFPSV
Sbjct:   487 LHKKDSSIRKDRGKHWWDKFRSFKGDTRSEEFYSLPFNLNKYFPSV 532

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR\|locus:2158829 AT5G49990 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202700 NAT7 "nucleobase-ascorbate transporter 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2194631 NAT8 "nucleobase-ascorbate transporter 8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2031085 AT1G49960 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2040874 AT2G34190 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2034104 AT1G65550 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2060076 AT2G05760 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2066190 PDE135 "pigment defective embryo 135" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|B9VMA9 SVCT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q27GI3	NAT6_ARATH	No assigned EC number	0.8627	0.9400	0.7669	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		434
pfam00860		389	pfam00860, Xan_ur_permease, Permease family	6e-43
COG2233		451	COG2233, UraA, Xanthine/uracil permeases [Nucleoti	8e-33
TIGR03173		406	TIGR03173, pbuX, xanthine permease	6e-31
TIGR00801		412	TIGR00801, ncs2, uracil-xanthine permease	5e-22
PRK10720		428	PRK10720, PRK10720, uracil transporter; Provisiona	7e-11
TIGR03616		429	TIGR03616, RutG, pyrimidine utilization transport	3e-07
PRK11412		433	PRK11412, PRK11412, putative uracil/xanthine trans	8e-06

>gnl\|CDD\|216158 pfam00860, Xan_ur_permease, Permease family	Back alignment and domain information

 Score =  154 bits (392), Expect = 6e-43
 Identities = 89/332 (26%), Positives = 154/332 (46%), Gaps = 24/332 (7%)

Query: 20  VTLLSRFDAIQKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVG 79
           VT L        +   +  + G+++VA  L  ++ F+GL   + R   P+   P++ L+G
Sbjct: 73  VTALMIAIGGADWGIALAGLFGAVLVAGVLFTLISFTGLRGRLARLFPPVVTGPVVLLIG 132

Query: 80  FGLYEFGFPGVAKCVEIGLPQLVIIVF---ISQYLPHVI----KRGKNIFDRFAVIFSVV 132
             L      G      I     V ++    ++  +  VI       K  F +  ++  ++
Sbjct: 133 LSLAPIAVKGAGGGWAIADGLTVGLLDLLGLAVVVLAVILLLSVFLKGFFRQGPILIGII 192

Query: 133 IVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFA 192
             W+ A  + +                 + +  +  APW ++P PF +G P F+ G    
Sbjct: 193 AGWLLALFMGI----------------VNFSPEVMDAPWFQLPHPFPFGTPLFNPGLILT 236

Query: 193 MMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSV 252
           ++  + VA+VESTG   AVA+ +     P   L RG+   G+  LLSGLFG    T+   
Sbjct: 237 VLAVALVAIVESTGDIRAVAKVSGRDLKPKPDLRRGLLADGLATLLSGLFGAF-PTTTYA 295

Query: 253 ENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGG 312
           EN G++ALT+V SRRV   +   +I   ++ KF A+F+SIP+P++  +  + F  +   G
Sbjct: 296 ENIGVVALTKVYSRRVGVTAGVILILLGLIPKFAALFSSIPSPVLGGVMLVMFGMIAGSG 355

Query: 313 LSFLQFCNLNSFRVKFILGFSIFIGLSVPQYF 344
           +S L   +L+S R   I+  S+ +GL +    
Sbjct: 356 VSNLITVDLDSARNLLIIAVSLVLGLGISTVP 387

This family includes permeases for diverse substrates such as xanthine, uracil, and vitamin C. However many members of this family are functionally uncharacterized and may transport other substrates. Members of this family have ten predicted transmembrane helices. Length = 389

>gnl\|CDD\|225142 COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|234136 TIGR03173, pbuX, xanthine permease	Back alignment and domain information

>gnl\|CDD\|233133 TIGR00801, ncs2, uracil-xanthine permease	Back alignment and domain information

>gnl\|CDD\|236744 PRK10720, PRK10720, uracil transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|132655 TIGR03616, RutG, pyrimidine utilization transport protein G	Back alignment and domain information

>gnl\|CDD\|183124 PRK11412, PRK11412, putative uracil/xanthine transporter; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		434
KOG1292		510	consensus Xanthine/uracil transporters [Nucleotide	100.0
COG2233		451	UraA Xanthine/uracil permeases [Nucleotide transpo	100.0
PRK11412		433	putative uracil/xanthine transporter; Provisional	100.0
PRK10720		428	uracil transporter; Provisional	100.0
TIGR03616		429	RutG pyrimidine utilization transport protein G. T	100.0
TIGR03173		406	pbuX xanthine permease. All the seed members of th	100.0
TIGR00801		415	ncs2 uracil-xanthine permease. NCS2 family appears	100.0
PF00860		389	Xan_ur_permease: Permease family; InterPro: IPR006	100.0
COG2252		436	Xanthine/uracil/vitamin C permease [Nucleotide tra	99.88
COG0659		554	SUL1 Sulfate permease and related transporters (MF	99.85
TIGR00815		563	sulP high affinity sulphate transporter 1. (2) SO4	99.71
PRK11660		568	putative transporter; Provisional	99.7
TIGR00843		395	benE benzoate transporter. The benzoate transporte	99.67
PF00916		280	Sulfate_transp: Sulfate transporter family; InterP	99.58
KOG0236		665	consensus Sulfate/bicarbonate/oxalate exchanger SA	99.4
PF03594		378	BenE: Benzoate membrane transport protein; InterPr	99.35
COG3135		402	BenE Uncharacterized protein involved in benzoate	99.16
TIGR00834		900	ae anion exchange protein. They preferentially cat	96.82
KOG1172		876	consensus Na+-independent Cl/HCO3 exchanger AE1 an	95.26
PF11840		492	DUF3360: Protein of unknown function (DUF3360); In	95.04
PF00955		510	HCO3_cotransp: HCO3- transporter family Only parti	90.46

>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=1.2e-76  Score=598.95  Aligned_cols=422  Identities=58%  Similarity=1.056  Sum_probs=396.6

Q ss_pred             ccccceEeeeeeeEEEecccC-----C---C-h----hHHHHHHHHhhhhHHHHHhHHHHHHhhhhhhHHHHHhcCCCcc
Q 013911            5 FKHHTTVINISLFWVVTLLSR-----F---D-A----IQKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSV   71 (434)
Q Consensus         5 ~~rlP~v~G~Sfa~i~~~~~~-----~---~-~----~~~~~~~~~~~~ga~~vaGli~~llg~~gl~~~l~~~fppvV~   71 (434)
                      +.|||++||+||||++|.++.     +   . +    +++|++.+|+++|++++++++++++|++|+.+++.|++.|+.+
T Consensus        70 G~RLp~v~G~Sfafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti  149 (510)
T KOG1292|consen   70 GTRLPLVQGPSFAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTI  149 (510)
T ss_pred             hcccccccccceehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhh
Confidence            569999999999999999832     2   1 1    2479999999999999999999999999999999999999999


Q ss_pred             chhhhhhhchhhhccCCCcccceeechhHHHHHHHHHhh--chhhh--hcCcccccchhhhHHHHHHHHHHHHHhhcccc
Q 013911           72 VPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQY--LPHVI--KRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAY  147 (434)
Q Consensus        72 G~~i~lIGl~l~~~g~~~~~~~~~i~~~~l~~ii~l~~~--~k~~~--~~~~~~l~~~aiLigivvG~~~a~~~g~~~~~  147 (434)
                      .+++.++|++++..+.+.++.||.++++.+++++++++|  .++..  ..+++.++++++++++.+.|++|.++...|.|
T Consensus       150 ~P~v~lvgl~l~~~~~~~~~~~weI~l~~~llli~fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay  229 (510)
T KOG1292|consen  150 VPLVALVGLGLFQDGFPKLGKHWEISLPEILLLILFSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAY  229 (510)
T ss_pred             hhHHHHHhhhhHHhhhhhhhhheeecHHHHHHHHHHHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999999999  53322  13467889999999999999999999999999


Q ss_pred             CCCCCCccceeccccCCCccCCCceecccCCCCCCCccChhhHHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCcccccc
Q 013911          148 NDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSR  227 (434)
Q Consensus       148 ~~~~~~~~~~~~vd~~~~v~~~p~f~~P~~~~~g~P~f~~~~i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r  227 (434)
                      |+.+.+|+.++|+|.+..+.++||+.+|+|++||.|+||++....++...++.++||+|++.+++|.+..++++++.+||
T Consensus       230 ~~~~~~t~~~~RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inR  309 (510)
T KOG1292|consen  230 PYKPTTTQSSCRTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNR  309 (510)
T ss_pred             CCCccccCCcccccHhhhhccCCceeecCCCccCCCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhh
Confidence            88778899999999988889999999999999999999999999999999999999999999999999988888999999


Q ss_pred             cccchhhhhhhhccccccccceeeeecceeeeeeeeCceeEEEechhHHHHHHhhhcccceecccchHHHHHHHHHHHHH
Q 013911          228 GVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAY  307 (434)
Q Consensus       228 ~~~~dGl~~ilaglfG~~~~tt~~~~n~g~i~~Tgv~SR~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv~fg~  307 (434)
                      ++..||++++++|+||+...+|.++||+|+++.||++||++.+++|.+|++++++.||+|++++||.|++||++.+.|++
T Consensus       310 gi~~eGig~lL~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~~~~m  389 (510)
T KOG1292|consen  310 GIGWEGIGSLLAGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCILFGM  389 (510)
T ss_pred             hhhhhhHHHHHHHhhCCCccceeeccceeeEeeeeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            99999999999999999999888889999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCcchhhhccccccchhhhhhhhhhhccChhhhHHHhhhhcCcCcccccccccccccccccCChhhHHHHHHHHhhc
Q 013911          308 VGAGGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDN  387 (434)
Q Consensus       308 i~~~Gi~~l~~~~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~ai~Ln~  387 (434)
                      +...|+++++.+|+++.||.+|+|+|+.+|+.+|+||+++     .+|.|+++++++++++.++++.+.+|+++|++||+
T Consensus       390 v~avgLSnLQf~dlns~RNl~IlG~Sif~gLsip~yF~~~-----~~~v~Tg~~~~d~ilnvll~~~m~Vggi~A~~LDn  464 (510)
T KOG1292|consen  390 VGAVGLSNLQFVDLNSSRNLFILGFSIFLGLSIPQYFEQY-----PGPVHTGNGWFDDILNVLLSSRMLVGGILAFILDN  464 (510)
T ss_pred             HHHHhhhhheeeccccccchhhhhHHHHHhccHHHHHHhC-----CCccccCcHHHHHHHHHHhhHHHHHHHHHhhhccc
Confidence            9999999999999999999999999999999999999996     45799999999999999999999999999999999


Q ss_pred             cccccCCcccccccchhhhhhccccCCcCcccccccccccccCCCCC
Q 013911          388 TLHKKDGQVRKDRGRHWWDKFWSFKGDTRSEEFYSLPFNLNKYFPSV  434 (434)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (434)
                      +.|+   .+|||||+++|++.++.++|.|.+|+|+||+++||+|++.
T Consensus       465 t~~g---atr~~RG~~~w~~~~~~~~d~~~~e~Y~lP~~~n~~f~~~  508 (510)
T KOG1292|consen  465 TLPG---ATREQRGLRWWDKFETFNGDVRNEEFYSLPFNLNRFFPRI  508 (510)
T ss_pred             cCCC---CChHhcCCcchhccccccCCccccccccCcHHHHhhcccC
Confidence            9994   3799999999999999999999999999999999999874

>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK11412 putative uracil/xanthine transporter; Provisional	Back alignment and domain information

>PRK10720 uracil transporter; Provisional	Back alignment and domain information

>TIGR03616 RutG pyrimidine utilization transport protein G	Back alignment and domain information

>TIGR03173 pbuX xanthine permease	Back alignment and domain information

>TIGR00801 ncs2 uracil-xanthine permease	Back alignment and domain information

>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []	Back alignment and domain information

>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]	Back alignment and domain information

>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00815 sulP high affinity sulphate transporter 1	Back alignment and domain information

>PRK11660 putative transporter; Provisional	Back alignment and domain information

>TIGR00843 benE benzoate transporter	Back alignment and domain information

>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related	Back alignment and domain information

>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]	Back alignment and domain information

>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>TIGR00834 ae anion exchange protein	Back alignment and domain information

>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised	Back alignment and domain information

>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		434
3qe7_A		429	Crystal Structure Of Uracil Transporter--Uraa Lengt		8e-10

>pdb|3QE7|A Chain A, Crystal Structure Of Uracil Transporter--Uraa Length = 429

Back alignment and structure

Iteration: 1

Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 5/156 (3%) Query: 164 GLIDAAPWIRVPW---PFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPM 220 G++D P I W P + P F+ ++ A+ V + E G A + Sbjct: 200 GIVDTTPIINAHWFALPTLY-TPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLL 258 Query: 221 PPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFS 280 L R + G+ ++SG FG+ T+ EN G++A+TRV S V+ +A F I S Sbjct: 259 RDPGLHRSMFANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLS 317 Query: 281 VLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFL 316 +GK A IP P++ + L + +GA G+ L Sbjct: 318 CVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVL 353 Database: pdbaa

PyMOL of 3qe7

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		434
3qe7_A		429	Uracil permease; uracil transporter, URAA, transpo	3e-27

>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli} Length = 429	Back alignment and structure

 Score =  111 bits (281), Expect = 3e-27
 Identities = 62/326 (19%), Positives = 118/326 (36%), Gaps = 54/326 (16%)

Query: 36  MRAIQGSLIVASTLQIVLGF---SGLWRNVTRFLSPLSVVPLISLVGFGL---------- 82
                G  I+   L  ++ F         +     P ++  +++++G  L          
Sbjct: 87  YEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGL 146

Query: 83  -YEFGFPGVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLL 141
               G    +K + I +  L + V  S          +       ++  V++ +  +  +
Sbjct: 147 LPAEGQTPDSKTIIISITTLAVTVLGSVL-------FRGFLAIIPILIGVLVGYALSFAM 199

Query: 142 TVGGAYNDAAPKTQASCRTDRAGLID-----AAPWIRVPWPFQWGAPSFDAGEAFAMMMA 196
                                 G++D      A W  +P  +    P F+      ++ A
Sbjct: 200 ----------------------GIVDTTPIINAHWFALPTLY---TPRFEWFAILTILPA 234

Query: 197 SFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAG 256
           + V + E  G     A       +    L R +   G+  ++SG FG+   T+   EN G
Sbjct: 235 ALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYG-ENIG 293

Query: 257 LLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFL 316
           ++A+TRV S  V+  +A F I  S +GK  A    IP P++  +  L +  +GA G+  L
Sbjct: 294 VMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVL 353

Query: 317 QF--CNLNSFRVKFILGFSIFIGLSV 340
                + N  +   +    + IG+S 
Sbjct: 354 IESKVDYNKAQNLILTSVILIIGVSG 379

PyMOL of 3qe7

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		434
3qe7_A		429	Uracil permease; uracil transporter, URAA, transpo	100.0

>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}	Back alignment and structure

Probab=100.00  E-value=7.2e-60  Score=488.16  Aligned_cols=344  Identities=19%  Similarity=0.292  Sum_probs=297.1

Q ss_pred             ccccccceEeeeeeeEEEecccCCChhHHHHHHHHhhhhHHHHHhHHHHHHhhh--hhh-HHHHHhcCCCccchhhhhhh
Q 013911            3 CAFKHHTTVINISLFWVVTLLSRFDAIQKFKRTMRAIQGSLIVASTLQIVLGFS--GLW-RNVTRFLSPLSVVPLISLVG   79 (434)
Q Consensus         3 ~~~~rlP~v~G~Sfa~i~~~~~~~~~~~~~~~~~~~~~ga~~vaGli~~llg~~--gl~-~~l~~~fppvV~G~~i~lIG   79 (434)
                      ++++|+|++||+||+|++|+.....      ++|++++|+++++|+++++++++  +++ +|++|+|||+|+|.++++||
T Consensus        60 ~~~~~lP~~~G~sfafi~~~~~i~~------~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IG  133 (429)
T 3qe7_A           60 ICKGKIPAYLGSSFAFISPVLLLLP------LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIG  133 (429)
T ss_dssp             HTTTCCCCCEEECGGGHHHHHHHGG------GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHH
T ss_pred             HcCCCCCeEecChHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHH
Confidence            5789999999999999999985432      47999999999999999999987  554 79999999999999999999


Q ss_pred             chhhhccCCCcc-----------cceeechhHHHHHHHHHhhchhhhhcCcccccchhhhHHHHHHHHHHHHHhhccccC
Q 013911           80 FGLYEFGFPGVA-----------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYN  148 (434)
Q Consensus        80 l~l~~~g~~~~~-----------~~~~i~~~~l~~ii~l~~~~k~~~~~~~~~l~~~aiLigivvG~~~a~~~g~~~~~~  148 (434)
                      +++++.++++.+           .++.+++.++++++++.++.|       +++|++++|+|+++||++++.+|..    
T Consensus       134 l~l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~k-------g~~~~~aiLigivvg~~~a~~~G~~----  202 (429)
T 3qe7_A          134 LELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFR-------GFLAIIPILIGVLVGYALSFAMGIV----  202 (429)
T ss_dssp             HHHHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSS-------TTTTTHHHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhc-------ccchhhHHHHHHHHHHHHHHHhcCC----
Confidence            999988765432           245677888888777766554       4678999999999999999999853    


Q ss_pred             CCCCCccceeccccCCCccCCCceecccCCCCCCCccChhhHHHHHHHHHHHHHhhcchhhhhhhhcCCCCCCccccccc
Q 013911          149 DAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRG  228 (434)
Q Consensus       149 ~~~~~~~~~~~vd~~~~v~~~p~f~~P~~~~~g~P~f~~~~i~~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~  228 (434)
                                  |++. +.++||+++|.   |+.|+||++.+..++++++++++|++|++.++++.++++.++++++||+
T Consensus       203 ------------d~~~-v~~a~~~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~  266 (429)
T 3qe7_A          203 ------------DTTP-IINAHWFALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRS  266 (429)
T ss_dssp             ------------TSSH-HHHSCSSCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHH
T ss_pred             ------------Cccc-ccccccccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchH
Confidence                        4443 56789999995   5779999999999999999999999999999999987655467899999


Q ss_pred             ccchhhhhhhhccccccccceeeeecceeeeeeeeCceeEEEechhHHHHHHhhhcccceecccchHHHHHHHHHHHHHh
Q 013911          229 VGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYV  308 (434)
Q Consensus       229 ~~~dGl~~ilaglfG~~~~tt~~~~n~g~i~~Tgv~SR~~~~~a~~~lill~l~pk~~al~a~IP~pV~gg~liv~fg~i  308 (434)
                      +++||++|+++|+||++|.|+|+ ||+|+++.||++||++..++|+++++++++||++++++.||.||+||+++++||++
T Consensus       267 l~adGla~i~~glfGg~p~Tt~~-en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i  345 (429)
T 3qe7_A          267 MFANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVI  345 (429)
T ss_dssp             HHHHHHHHHHHHHHTCCCEEECH-HHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCcchHH-HhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCcchh--hhccccccchhhhhhhhhhhccChhhhHHHhhhhcCcCcccccccccccccccccCChhhHHHHHHHHhh
Q 013911          309 GAGGLSFL--QFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLD  386 (434)
Q Consensus       309 ~~~Gi~~l--~~~~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~ai~Ln  386 (434)
                      ..+|+|.+  +++|++++||.+|+++++.+|++...                    +|  ++.+..||+++|+++|++||
T Consensus       346 ~~~Gi~~l~~~~v~~~~~rn~~i~~~~l~~G~g~~~--------------------~~--~~~~~~~gi~~~~~~ai~ln  403 (429)
T 3qe7_A          346 GASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAK--------------------VN--IGAAELKGMALATIVGIGLS  403 (429)
T ss_dssp             HHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHCCC--------------------CC--SSSCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHH--------------------Hh--hhhhccCcHHHHHHHHHHHH
Confidence            99999999  89999888999999999999997521                    22  35678999999999999999


Q ss_pred             ccccccCCcccccccc
Q 013911          387 NTLHKKDGQVRKDRGR  402 (434)
Q Consensus       387 ~~~~~~~~~~~~~~~~  402 (434)
                      +++|++++.+++|..+
T Consensus       404 ~~l~~~~~~~~~~~~~  419 (429)
T 3qe7_A          404 LIFKLISVLRPEEVVL  419 (429)
T ss_dssp             HHHTCCC---------
T ss_pred             HHhcCccccCCcceEe
Confidence            9999875555444444

PyMOL of 3qe7

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00