Citrus Sinensis ID: 013939

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
Protein Sequence
MASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPGDPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTPANRTYEGFATEIQS
Secondary Structure (PSIPRED)
ccccccccHHcccccccccEEEEccccHHHHHHHHHHccccccccEEcccccccccccccccccEEEEEEEEEHHHHHcccccccccHHHHHccccEEEcccccccEEEEcccccHHHHHHHHHccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHcccccccccccccccccccccEEEEcccccHHHHHHHcccccccEEEEccccccccEEEEEccHHHHccccHHHHHHHHHHccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHccccEEEEEEcccccEEEEEEEHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccHHHHccccccccEcccccHHHHHHHHHHccccccEEEEccccccccccccccccEEEEEEEEHHHHHHHHHcccccccHHHHHcccHHHHcccccccEEEcccccHHHHHHHHHHccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHHHHHHHccccccccHHHcccccccccccccccHHHHHHHHccccccEEEEEEcccccccEEEEEEcHHHHcHccHHHHHHHHHHHcHHHHEEEEccccccHHHHHHHHHHHHccccHHccccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHcccEEEEEEcccccEEEEEEEHHHHHHHHHcccccccccccccccccHHccc
Coil and Loop (DISEMBL)
MASVFIYHVVgdltvgkpelaefyetETVEAAIKAIGEstecgipvwkkkthvgiienGEMRQQRFVGILNSFDIVAFLAKsdcledqdkamktpvsqvivpnnsllkqvdpgtRLIDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNgkwlknmdasnsssnnliananrpssssttsvrdkfccLSREDVIRFLIGCLgalaplplssisslgvinpnyssieasVPAIEatlkapgdpsaiavleptsedqYKIIGEISASKLWKCDYLAAAWALANLSAgqfvmgvednvtprsfpdysanstlrenntvngvgstrprkfcsrsigfnpsspclaasrspsfgtgrsmyrgrstpltcKITSSLAAVMAQMLSHRAThvwvtedesddvlVGVVGYADILVAVtkqpaaltpanrtyegfaTEIQS
Flexible Loop (DISEMBL)
masvfiyhvvgdltvgkpeLAEFYETETVEAAIKAIgestecgipvwKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKtpvsqvivpnnsllkqvdPGTRLIDALEMMKQgvrrllvpksvvwkgmSKRFSILYNGKWLKNMDASNSSSNNLIananrpssssttsvRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPGDPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPdysanstlrenntvngvgstrprKFCSRsigfnpsspclaasrspsfgtgrsmyrgrSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAvtkqpaaltpanrtyegfateiqs
Low Complexity Region (SEG)
MASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDasnsssnnliananRPSSSSTTSVRDKFCCLSREDVIRFligclgalaplplssisslGVINPNYSSIEASVPAIEATLKAPGDPSAIAVLEPTSEDQYKIIGEISASKLWKCDYlaaawalanlsaGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTPANRTYEGFATEIQS
Disordered region (IsUnstruct)
***VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLK***************************RDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATL*******AIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV*****************************************************************PLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTP**************
Disordered Region (DISOPRED)
*ASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKT*********MRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWKGMSKRF*ILYNGK******************************RDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPGDPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFP**************************************************************CKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQP*******************
Disordered Region (DISEMBL)
MASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANA************DKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPGDPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTPANRTYEGFATEIQS
Disordered Region (DISPRO)
*ASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSV**********************************************RDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPGDPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLR************************************************STPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTP**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPGDPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTPANRTYEGFATEIQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	433	2.2.26 [Sep-21-2011]
Q8GZA4	425	CBS domain-containing pro	yes	no	0.972	0.990	0.734	1e-172
Q84WQ5	391	CBS domain-containing pro	no	no	0.847	0.938	0.266	1e-22
Q8GXI9	357	SNF1-related protein kina	no	no	0.718	0.871	0.219	1e-09
Q9XI37	352	SNF1-related protein kina	no	no	0.519	0.639	0.251	1e-06

>sp|Q8GZA4|CBSX6_ARATH CBS domain-containing protein CBSX6 OS=Arabidopsis thaliana GN=CBSX6 PE=1 SV=1

 Score =  603 bits (1556), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 321/437 (73%), Positives = 364/437 (83%), Gaps = 16/437 (3%)

Query: 1   MASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHV---GIIE 57
           MASVF+YHVVGDLTVGKPE+ EFYETETVE+AI+AIGESTECGIPVW+K+T     G +E
Sbjct: 1   MASVFLYHVVGDLTVGKPEMVEFYETETVESAIRAIGESTECGIPVWRKRTTPSLPGFVE 60

Query: 58  NGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLI 117
           N EMRQQRFVGILNS DIVAFLAK++CL++ +KAMK PVS+V+ P+N+LLKQVDPGTRLI
Sbjct: 61  NSEMRQQRFVGILNSLDIVAFLAKTECLQE-EKAMKIPVSEVVSPDNTLLKQVDPGTRLI 119

Query: 118 DALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSS 177
           DALEMMKQGVRRLLVPKSVVW+GMSKRFSILYNGKWLKN + S+SSS     + NRP++S
Sbjct: 120 DALEMMKQGVRRLLVPKSVVWRGMSKRFSILYNGKWLKNSENSSSSSGLSADSTNRPTTS 179

Query: 178 STTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATL 237
            T+S RDKFCCLSREDVIRFLIG LGALAPLPL+SIS+LG+IN NY+ IEAS+PAIEAT 
Sbjct: 180 MTSS-RDKFCCLSREDVIRFLIGVLGALAPLPLTSISTLGIINQNYNFIEASLPAIEATR 238

Query: 238 KAPGDPSAIAVLEPT-SEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV 296
           +   DPSAIAVLE T +E Q+KIIGEISASKLWKCDYLAAAWALANL AGQFVMGVEDN+
Sbjct: 239 RPLCDPSAIAVLEQTENEQQFKIIGEISASKLWKCDYLAAAWALANLYAGQFVMGVEDNM 298

Query: 297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMY 356
           + RSF D+   S        NG  +T  +KF SRSIGFNP+SP            GRSMY
Sbjct: 299 SSRSFSDFLQTSF--PGGEQNGT-ATNAKKFSSRSIGFNPTSPT-------RLSIGRSMY 348

Query: 357 RGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAA 416
           RGRS PLTCK +SSLAAVMAQMLSHRATHVWVTE +SDDVLVGVVGY +IL AVTKQP+A
Sbjct: 349 RGRSAPLTCKTSSSLAAVMAQMLSHRATHVWVTEADSDDVLVGVVGYGEILTAVTKQPSA 408

Query: 417 LTPANRTYEGFATEIQS 433
             P+NR+YEGF  E QS
Sbjct: 409 FVPSNRSYEGFGNENQS 425

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WQ5|CBSX5_ARATH CBS domain-containing protein CBSX5 OS=Arabidopsis thaliana GN=CBSX5 PE=2 SV=2

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 189/420 (45%), Gaps = 53/420 (12%)

Query: 1   MASVFIYHVVGDLTVGKPELAEFYETETVEA-AIKAIGESTECGIPVWKKKTHVGIIENG 59
           MA   + + V DL +GKP L     + +  + AI A+  S +  + VW         ++ 
Sbjct: 1   MALSLLSYNVSDLCLGKPPLRCLSSSSSSVSDAIAALKSSEDTFLSVWNCNH-----DDD 55

Query: 60  EMRQQRFVGILNSFDIVAFLAKSDCLEDQDK---AMKTPVSQVIVPNNSLLKQVDPGTRL 116
              +   +G ++  D++  L+K     D D    A+ + VS ++    S++  V P   L
Sbjct: 56  NNTECECLGKISMADVICHLSK-----DHDHSLCALNSSVSVLLPKTRSIVLHVQPSCSL 110

Query: 117 IDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSS 176
           I+A++++ +G + L+VP              ++   + K              N N   +
Sbjct: 111 IEAIDLIIKGAQNLIVP--------------IHTKPYTKKKQH----------NDNVSVT 146

Query: 177 SSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEAS-----VP 231
           ++T S   +FC +++ED+I+FL+G + A +PLP  S+S LGVIN  ++ +          
Sbjct: 147 TTTHSNGQRFCWITQEDIIQFLLGFIAAFSPLPAMSLSDLGVINSTHTVVAVDYHSSASA 206

Query: 232 AIEATLKAPGDPSAIAVLEPTSEDQY-KIIGEISASKLWKCDYLAAAWALANLSAGQFVM 290
            + A   A    +++AV++   +D +  +IGEIS   L  CD   AA A+A LSAG  + 
Sbjct: 207 VVSAVSNALAVQTSVAVVDGEGDDPFTSLIGEISPMTLTCCDE-TAAAAVATLSAGDLMA 265

Query: 291 GVEDNVTPRSFPDYSANSTLRENNTVNGVGS---TRPRKFCSRSIGFNPSSPCLAASRSP 347
            ++    P S      N    E+  + G+ S   +      S        +P    S   
Sbjct: 266 YIDGANPPESLVQIVRNRL--EDKGLIGLMSLFDSLSSYSTSSGYSSEEEAPVRTTSYGR 323

Query: 348 SFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADIL 407
           S  +   M R +S  + C   SSL AVM Q ++HR  + WV   E D   VG+V + DIL
Sbjct: 324 SMSSSARMAR-KSEAIVCNPKSSLMAVMIQAVAHRVNYAWVV--EKDGCFVGMVTFVDIL 380

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXI9|PV42B_ARATH SNF1-related protein kinase regulatory subunit gamma-like PV42b OS=Arabidopsis thaliana GN=PV42B PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 93/424 (21%), Positives = 164/424 (38%), Gaps = 113/424 (26%)

Query: 10  VGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPV------WKKKTHVGIIE----NG 59
           V DL + K  L E  +  T+  A+  +  +    +PV      W       I+E    +G
Sbjct: 12  VKDLMIDKRRLVEVPDNATLGDALNTMVANRVRAVPVAAKPGQWLGAGGSMIVELDKQSG 71

Query: 60  EMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVI--VPNNSLLKQVDPGTRLI 117
             R+Q ++G++   D+VA +A  D     DK M  PVS +I   P    L  ++P T ++
Sbjct: 72  SARKQ-YIGMVTMLDVVAHIAGDDGESGLDKKMAAPVSSIIGHCPEGLSLWSLNPNTSIM 130

Query: 118 DALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSS 177
           D +EM+ +G+ R+LVP                           +S++ N+       S+S
Sbjct: 131 DCMEMLSKGIHRVLVPL--------------------------DSNTENITGPELVESAS 164

Query: 178 STTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEAT- 236
           +       +  LS+ D+I F       L  +   +++ L  I+    ++ +     +A  
Sbjct: 165 A-------YAMLSQMDLISFFFDQSSQLHGILSHTVTDLSAIHNTVLALTSQARVKDAIQ 217

Query: 237 LKAPGDPSAIAVLEPTSEDQ----------YKIIGEISASKLWKCDYLAAAWALANLSAG 286
             +    +A+ ++E + E +           +++G  SAS L  C +LA   +   L+A 
Sbjct: 218 CMSIAMLNAVPIVEASGEGEDHKQLVDGKNRRVVGTFSASDLKGC-HLATLRSWLPLNAL 276

Query: 287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRS 346
           +FV  +     PR+    +A ST                                     
Sbjct: 277 EFVEKI-----PRTLLFTAATST------------------------------------- 294

Query: 347 PSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADI 406
                GR +       +TC +TS+LA V+  + + R   VWV +      L G+V   DI
Sbjct: 295 ----PGREL-------VTCHVTSTLAQVIHMVTTKRVHRVWVVDQNGG--LQGLVSLTDI 341

Query: 407 LVAV 410
           +  V
Sbjct: 342 IAVV 345

Plays redundant role with PV42a in regulating male gametogenesis and pollen tube guidance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI37|PV42A_ARATH SNF1-related protein kinase regulatory subunit gamma-like PV42a OS=Arabidopsis thaliana GN=PV42A PE=1 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 118/290 (40%), Gaps = 65/290 (22%)

Query: 12  DLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTH-VG-----IIENGEMR--- 62
           DLTV    L E   T T+  A+  +  ++   +PV     H +G     I+E+ +     
Sbjct: 20  DLTVRNRRLVEVPYTATLSHAMNTLVANSISALPVAAPPGHWIGAGGSMIMESDKQTGVV 79

Query: 63  QQRFVGILNSFDIVAFLAKSDC-LEDQDKAMKTPVSQVI--VPNNSLLKQVDPGTRLIDA 119
           ++ ++GIL   DI+A +A  D  L D D+ M + VS +I        L  ++P T +++ 
Sbjct: 80  RKHYIGILTMLDILAHIAGEDSNLSDLDRKMSSQVSSIIGHCLEGLSLWTLNPNTSVLEC 139

Query: 120 LEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSST 179
           +E+  +G+ R LVP                          S+  SNN IA      S+S 
Sbjct: 140 MEVFSKGIHRALVPVE------------------------SSIESNNTIAGVELIESASA 175

Query: 180 TSVRDKFCCLSREDVIRFLIG-CLGALAPLPLSSISSLGVINPNYSSIEA---------- 228
                 +  L++ D++RFL       L  +   SIS LG +N +  +I            
Sbjct: 176 ------YKMLTQMDLLRFLKDHHFDDLKTVLSRSISDLGAVNDSVYAITERTTVSNAINV 229

Query: 229 -------SVPAIEATLKAPGDPSAIAVLEPTSEDQYKIIGEISASKLWKC 271
                  +VP + A   A  D      L+  +    K+IG  SA+ L  C
Sbjct: 230 MKGALLNAVPIVHAPDIAQEDH-----LQLVNGRHRKVIGTFSATDLKGC 274

Plays redundant role with PV42b in regulating male gametogenesis and pollen tube guidance.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
224128944	424	predicted protein [Populus trichocarpa]	0.976	0.997	0.783	0.0
356531916	425	PREDICTED: CBS domain-containing protein	0.979	0.997	0.736	0.0
224144928	422	predicted protein [Populus trichocarpa]	0.967	0.992	0.788	0.0
255543118	432	conserved hypothetical protein [Ricinus	0.981	0.983	0.765	0.0
225431005	427	PREDICTED: CBS domain-containing protein	0.979	0.992	0.768	1e-180
356568477	425	PREDICTED: CBS domain-containing protein	0.979	0.997	0.719	1e-180
449470251	425	PREDICTED: CBS domain-containing protein	0.981	1.0	0.745	1e-177
15218643	425	CBS domain-containing protein [Arabidops	0.972	0.990	0.734	1e-170
297840957	424	hypothetical protein ARALYDRAFT_475589 [	0.967	0.988	0.732	1e-169
388508444	422	unknown [Medicago truncatula]	0.969	0.995	0.713	1e-168

>gi|224128944|ref|XP_002329005.1| predicted protein [Populus trichocarpa] gi|222839239|gb|EEE77590.1| predicted protein [Populus trichocarpa]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/434 (78%), Positives = 374/434 (86%), Gaps = 11/434 (2%)

Query: 1   MASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGE 60
           MASVF+YHVVGDLTVGKPE+ EFYETETVE+AI+AIGESTECGIPVWK+K+HV +IE  E
Sbjct: 1   MASVFLYHVVGDLTVGKPEMVEFYETETVESAIRAIGESTECGIPVWKRKSHVSMIETSE 60

Query: 61  MRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDAL 120
           MRQQRFVGILNS DIVAFLA ++CLEDQDKA+KT VSQV+VPN SLLKQVDP TRLIDAL
Sbjct: 61  MRQQRFVGILNSLDIVAFLASTECLEDQDKAIKTSVSQVVVPNASLLKQVDPATRLIDAL 120

Query: 121 EMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDA-SNSSSNNLIANANRPSSSST 179
           EMMKQGVRRLLVPKS+VWKGMSKRFS LYNGKWLKN DA +NSS+NNL  N NRPSSSS 
Sbjct: 121 EMMKQGVRRLLVPKSMVWKGMSKRFSFLYNGKWLKNADASNNSSNNNLTINTNRPSSSSG 180

Query: 180 TSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKA 239
           TS R+KFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNY+S+EAS+PA EAT K 
Sbjct: 181 TSNRNKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYTSVEASLPAFEATRKL 240

Query: 240 PGDPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299
            GDPS +AV+EP  + Q KIIGEISAS+LWKCDYLAAAWALANLSAGQFVMGVEDN T R
Sbjct: 241 HGDPSEVAVVEPIPDGQCKIIGEISASRLWKCDYLAAAWALANLSAGQFVMGVEDNETAR 300

Query: 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGR 359
           S  D++ NS + + +T NG+GSTR R+F SRSIGFNP S         S   GRSMYRGR
Sbjct: 301 SLLDFAVNSAVGDESTANGIGSTRLREFSSRSIGFNPGS---------SIRMGRSMYRGR 351

Query: 360 STPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTP 419
           S PLTCKITSSLAAVMAQMLSHRATHVWV ED+SDD+LVGVVGYADIL AVTKQPA++T 
Sbjct: 352 SAPLTCKITSSLAAVMAQMLSHRATHVWVIEDDSDDILVGVVGYADILAAVTKQPASVT- 410

Query: 420 ANRTYEGFATEIQS 433
            NR   GF TE Q+
Sbjct: 411 VNRPEGGFTTEFQN 424

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531916|ref|XP_003534522.1| PREDICTED: CBS domain-containing protein CBSX6-like [Glycine max]

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/432 (73%), Positives = 366/432 (84%), Gaps = 8/432 (1%)

Query: 1   MASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGE 60
           MASVF+YHVVGDLTVGKPELAEF+E+ETVE+AI+AIGE  E  IP+WKK++ +GI EN +
Sbjct: 1   MASVFVYHVVGDLTVGKPELAEFHESETVESAIRAIGECHEGTIPIWKKRSQLGI-ENSD 59

Query: 61  MRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDAL 120
           MRQQRFVGIL+SFDIVAFLAKS CLEDQDKA+KTPVS+V+V NNSLL+ VDP TRLIDAL
Sbjct: 60  MRQQRFVGILSSFDIVAFLAKSQCLEDQDKALKTPVSEVVVHNNSLLRVVDPATRLIDAL 119

Query: 121 EMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTT 180
           +MMKQGV+RLLVPKSV WKGMSKRFS++Y GKWLKN ++  +SSNNL  N NR  S+S T
Sbjct: 120 DMMKQGVKRLLVPKSVAWKGMSKRFSVIYYGKWLKNSESPGNSSNNLPLNMNRSPSTSIT 179

Query: 181 SVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAP 240
            +RD++CCLSREDV+RF+IGCLGALAPLPL+SI+SLG IN NY+ IE+S PAIEAT K P
Sbjct: 180 PIRDRYCCLSREDVLRFIIGCLGALAPLPLTSIASLGAINSNYNYIESSTPAIEATQKLP 239

Query: 241 GDPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300
            DPSA+AV+E TS+ Q KIIGEISA KLWKCDYL+AAWALANLSAGQFVMGVEDNVTPRS
Sbjct: 240 QDPSAVAVIESTSDGQCKIIGEISACKLWKCDYLSAAWALANLSAGQFVMGVEDNVTPRS 299

Query: 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRS 360
            P +S +    EN+  NG GS +PRKF SRS+GF       + + S SFG+ RSMYRGRS
Sbjct: 300 LPQFSLDLASGENDLANGGGSRKPRKFSSRSVGF------FSNTASHSFGS-RSMYRGRS 352

Query: 361 TPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTPA 420
            PLTCKITSSLAAV+AQMLSHRATHVWVTEDE+D+VLVGVVGYADIL AVTK P A  PA
Sbjct: 353 APLTCKITSSLAAVLAQMLSHRATHVWVTEDENDEVLVGVVGYADILAAVTKPPTAFIPA 412

Query: 421 NRTYEGFATEIQ 432
           NR+ EGF  EIQ
Sbjct: 413 NRSTEGFGNEIQ 424

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144928|ref|XP_002325465.1| predicted protein [Populus trichocarpa] gi|222862340|gb|EEE99846.1| predicted protein [Populus trichocarpa]

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/430 (78%), Positives = 371/430 (86%), Gaps = 11/430 (2%)

Query: 1   MASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGE 60
           M SVF+YHVVGDLTVGKPE+ EFYETETVE+AI+AIGESTECGIPVWK+K+HVG+IEN E
Sbjct: 1   MPSVFLYHVVGDLTVGKPEMVEFYETETVESAIRAIGESTECGIPVWKRKSHVGMIENSE 60

Query: 61  MRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDAL 120
            R QRFVGILNS DIVAFLA ++CLED+DKA+KTPVSQV+VPN SLLKQVDP TRLIDAL
Sbjct: 61  TRLQRFVGILNSLDIVAFLASTECLEDRDKAIKTPVSQVVVPNTSLLKQVDPATRLIDAL 120

Query: 121 EMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDA-SNSSSNNLIANANRPSSSST 179
           EMMKQGVRRL+VPKS+ WKGMSKRFSILYNGKWLKN D  ++SS+NNL  N NRPSSSS 
Sbjct: 121 EMMKQGVRRLIVPKSMGWKGMSKRFSILYNGKWLKNADTSNSSSNNNLTINPNRPSSSSG 180

Query: 180 TSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKA 239
           TS RDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLG IN NY+S+EAS+PAIEAT K 
Sbjct: 181 TSNRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGAINTNYNSLEASLPAIEATRKL 240

Query: 240 PGDPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299
           P DPSAIAV+EP    Q KIIGEISAS+LWKCDYLAAAWALANLSAGQFVMGVEDNVT R
Sbjct: 241 PEDPSAIAVVEPIPNGQCKIIGEISASRLWKCDYLAAAWALANLSAGQFVMGVEDNVTSR 300

Query: 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGR 359
           S PD++ NS   ++NT +G GSTR RKF SRSIGFNP +         S G GRS+YRGR
Sbjct: 301 SLPDFAVNSAADDDNTAHGAGSTRLRKFSSRSIGFNPGN---------SIGIGRSVYRGR 351

Query: 360 STPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTP 419
           S PLTCKITSSLAAVMAQMLSHRATHVWV ED SDD+LVGVVGYADIL AVTKQPA++T 
Sbjct: 352 SAPLTCKITSSLAAVMAQMLSHRATHVWVIEDHSDDILVGVVGYADILAAVTKQPASVTH 411

Query: 420 ANRTYEGFAT 429
            NR  E FAT
Sbjct: 412 VNRP-EAFAT 420

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543118|ref|XP_002512622.1| conserved hypothetical protein [Ricinus communis] gi|223548583|gb|EEF50074.1| conserved hypothetical protein [Ricinus communis]

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/440 (76%), Positives = 377/440 (85%), Gaps = 15/440 (3%)

Query: 1   MASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGE 60
           MASVF+YHVVGDLTVGKPE+ EF ETETVE+AI+AIGESTECGIPVWK+++HV +IEN E
Sbjct: 1   MASVFLYHVVGDLTVGKPEMVEFCETETVESAIRAIGESTECGIPVWKRRSHVNMIENNE 60

Query: 61  MRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDAL 120
           MRQQRFVGILNS DIVAFLAK+ CLEDQ+KAMKTPVS+V+VP+NSLLKQVDP TRLIDAL
Sbjct: 61  MRQQRFVGILNSLDIVAFLAKAQCLEDQEKAMKTPVSEVVVPDNSLLKQVDPATRLIDAL 120

Query: 121 EMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMD-------ASNSSSNNLIANANR 173
           EMMKQGV+RLLV K  VWKGMSKRFSILYNGKWLKN+D          +SSNNL++N +R
Sbjct: 121 EMMKQGVKRLLVSKGTVWKGMSKRFSILYNGKWLKNVDSSNSSNNLMGNSSNNLMSNISR 180

Query: 174 PSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAI 233
           PSSSSTT  RDKFCCLSREDVIRF+IGCLGALAPLPLSSISSLG IN NY S+EAS+ AI
Sbjct: 181 PSSSSTTISRDKFCCLSREDVIRFIIGCLGALAPLPLSSISSLGAINFNYYSVEASLSAI 240

Query: 234 EATLKAPGDPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVE 293
           EAT K P DP A+AV+EP  +   KIIGEISAS+LWKCDYLAAAWALANLS+GQFVMGVE
Sbjct: 241 EATQKLPKDPCAVAVVEPMPDGHSKIIGEISASRLWKCDYLAAAWALANLSSGQFVMGVE 300

Query: 294 DNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGR 353
           DN+T RS PD++ NST+ +NNT NG GSTRP+KF S+SIGFNP         S SFG GR
Sbjct: 301 DNLTARSLPDFTVNSTVSDNNTANGGGSTRPKKFSSKSIGFNPG--------SSSFGIGR 352

Query: 354 SMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413
           SMYRGRS PLTCKITSSLAAVMAQMLSHRATHVWVTE ++D+VLVGVVGYADIL AVTK 
Sbjct: 353 SMYRGRSAPLTCKITSSLAAVMAQMLSHRATHVWVTEADNDEVLVGVVGYADILFAVTKP 412

Query: 414 PAALTPANRTYEGFATEIQS 433
           PA+  P NR+ EGF TEIQ+
Sbjct: 413 PASFIPINRSTEGFPTEIQN 432

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431005|ref|XP_002279210.1| PREDICTED: CBS domain-containing protein CBSX6 [Vitis vinifera] gi|297735292|emb|CBI17654.3| unnamed protein product [Vitis vinifera]

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 335/436 (76%), Positives = 370/436 (84%), Gaps = 12/436 (2%)

Query: 1   MASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGE 60
           MASVF+YHVVGDLTVGKPEL EF ETETVE+AI+ IGES E  IP+WK+++HVG++E  E
Sbjct: 1   MASVFLYHVVGDLTVGKPELVEFPETETVESAIRVIGESAEGSIPIWKRRSHVGVMEKSE 60

Query: 61  MRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDAL 120
           MRQQRFVGILNS DIVAFLA+  CL DQ+KAMKTPVS+V+VPNNSLL++VDP TRLIDAL
Sbjct: 61  MRQQRFVGILNSLDIVAFLARDACLVDQEKAMKTPVSEVVVPNNSLLREVDPATRLIDAL 120

Query: 121 EMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTT 180
           EMMK G++RLLVPKSVVWKGMSKRFSILYNGKWLKN+DAS SSS NL  NANRPSSSST 
Sbjct: 121 EMMKHGLKRLLVPKSVVWKGMSKRFSILYNGKWLKNLDAS-SSSTNLAPNANRPSSSSTP 179

Query: 181 SVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAP 240
           S R+KFCCLSREDVIRF+IGCLGALAPLPLSSISSLG I+PNY SIEAS PAI+ T K P
Sbjct: 180 SSRNKFCCLSREDVIRFVIGCLGALAPLPLSSISSLGAISPNYYSIEASFPAIQVTQKLP 239

Query: 241 GDPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300
            DPSA+AV+E T + QYKIIGEISA KLWKCDYLAAAWALANLSAGQFVMGVEDNVT RS
Sbjct: 240 QDPSAVAVVESTPDGQYKIIGEISACKLWKCDYLAAAWALANLSAGQFVMGVEDNVTSRS 299

Query: 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGF--NPSSPCLAASRSPSFGTGRSMYRG 358
            P +S N T  ENN  NG  STR RKF SRSIGF  NP+        SPSFG  RSMYRG
Sbjct: 300 LPHFSVNLTGGENNMANGGASTRQRKFSSRSIGFFSNPA--------SPSFGASRSMYRG 351

Query: 359 RSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALT 418
           RS PLTCK+TSSLAAVMAQMLSHRATHVWVTE ES+D+LVGVVGYADIL AV KQPA + 
Sbjct: 352 RSAPLTCKVTSSLAAVMAQMLSHRATHVWVTEAESEDILVGVVGYADILAAVIKQPAPVI 411

Query: 419 PANR-TYEGFATEIQS 433
           P+   + EG+ATEIQ+
Sbjct: 412 PSTTPSGEGYATEIQN 427

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568477|ref|XP_003552437.1| PREDICTED: CBS domain-containing protein CBSX6-like [Glycine max]

 Score =  635 bits (1639), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 311/432 (71%), Positives = 363/432 (84%), Gaps = 8/432 (1%)

Query: 1   MASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGE 60
           MASVF+YHVVGDLTVGKPELAEF+E+ETVE+AI+AIGES E  IP+WKK++ +GI EN +
Sbjct: 1   MASVFVYHVVGDLTVGKPELAEFHESETVESAIRAIGESPEGSIPIWKKRSQLGI-ENSD 59

Query: 61  MRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDAL 120
           MRQQRFVGIL+SFDIVAFLAKS CLEDQDKA+KTPVS+V+V NNSLL+ VDP TRLIDAL
Sbjct: 60  MRQQRFVGILSSFDIVAFLAKSRCLEDQDKALKTPVSEVVVHNNSLLRVVDPATRLIDAL 119

Query: 121 EMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTT 180
           +MMKQGV+RLLVPKS+ WKGMSKRFS++Y GKWLKN ++  +SSNNL  + NR  S+S T
Sbjct: 120 DMMKQGVKRLLVPKSIAWKGMSKRFSVIYYGKWLKNSESPGNSSNNLPLSMNRSPSTSVT 179

Query: 181 SVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAP 240
            + DK+CCLSREDV+RF+IGCLGALAPLPL+SI++L  IN NY+ IE+S PAIEAT K P
Sbjct: 180 PIPDKYCCLSREDVLRFIIGCLGALAPLPLTSIAALEAINSNYNYIESSTPAIEATQKLP 239

Query: 241 GDPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300
            DPSA+AV+E  S+ Q KIIGEISA KLWKCDYL+AAWALANLSAGQFVMGVEDNVTPRS
Sbjct: 240 QDPSAVAVIESASDGQCKIIGEISACKLWKCDYLSAAWALANLSAGQFVMGVEDNVTPRS 299

Query: 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRS 360
            P++S +S   + + VN  GS +PRKF SRS+GF       + S S +F + RSMYRGRS
Sbjct: 300 LPEFSLDSPSGDIDLVNSGGSRKPRKFSSRSVGF------FSNSASHNF-SSRSMYRGRS 352

Query: 361 TPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTPA 420
            PLTCKITSSLAAV+AQMLSHRATHVWVTEDE+D+VLVGVVGYADIL AVTK P    PA
Sbjct: 353 APLTCKITSSLAAVLAQMLSHRATHVWVTEDENDEVLVGVVGYADILAAVTKPPTTFIPA 412

Query: 421 NRTYEGFATEIQ 432
           NR+ EGF  EIQ
Sbjct: 413 NRSTEGFGNEIQ 424

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470251|ref|XP_004152831.1| PREDICTED: CBS domain-containing protein CBSX6-like [Cucumis sativus] gi|449477694|ref|XP_004155096.1| PREDICTED: CBS domain-containing protein CBSX6-like isoform 1 [Cucumis sativus] gi|449477697|ref|XP_004155097.1| PREDICTED: CBS domain-containing protein CBSX6-like isoform 2 [Cucumis sativus]

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 323/433 (74%), Positives = 367/433 (84%), Gaps = 8/433 (1%)

Query: 1   MASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGE 60
           MASVF+YHVVGDLTVGKPE+ EFYETET+E AI+ IGESTECG+P+WK+KTHVGIIEN E
Sbjct: 1   MASVFLYHVVGDLTVGKPEMTEFYETETIETAIRVIGESTECGVPIWKRKTHVGIIENAE 60

Query: 61  MRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDAL 120
           M+QQRFVGIL+S DIVAFLA+S+ LEDQ++AMK PVS+ +VPN SLL+QVDP TRLIDAL
Sbjct: 61  MKQQRFVGILSSLDIVAFLARSENLEDQERAMKAPVSEAVVPNYSLLRQVDPATRLIDAL 120

Query: 121 EMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTT 180
           EMMKQGVRRLL+ KSVVWKGMSKRFSILYNGKWLKN+D   +SSNNL  N NRPSSSST+
Sbjct: 121 EMMKQGVRRLLIRKSVVWKGMSKRFSILYNGKWLKNIDTPGNSSNNLNLNPNRPSSSSTS 180

Query: 181 SVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAP 240
           +  DKFCCLSREDVIRFLIGCLGALAPLPLSSIS+L  INPNY SI+AS PAI+ + K P
Sbjct: 181 TSHDKFCCLSREDVIRFLIGCLGALAPLPLSSISTLEAINPNYCSIDASTPAIDISHKLP 240

Query: 241 GDPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300
            DP A+AV+E   ++QY+IIGEISASKLWKC+YLAAAWALANLSAGQFVMGVEDN+T R 
Sbjct: 241 DDPVAVAVVENIHDNQYRIIGEISASKLWKCNYLAAAWALANLSAGQFVMGVEDNMTSRM 300

Query: 301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRS 360
            PD S N  + EN++ NG G+TR RKF SRSIGFNP         S +F   RSMYRGRS
Sbjct: 301 VPDLSTNGNVDENDSANGGGATRARKFSSRSIGFNP--------LSRAFRINRSMYRGRS 352

Query: 361 TPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTPA 420
            PLTCK+TSSLAAVMAQMLSHRA+HVWVTEDE+DD+LVGVVGYADIL AVTKQP +  PA
Sbjct: 353 APLTCKVTSSLAAVMAQMLSHRASHVWVTEDENDDILVGVVGYADILAAVTKQPTSFIPA 412

Query: 421 NRTYEGFATEIQS 433
           NR++E     IQS
Sbjct: 413 NRSFETLGNSIQS 425

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218643|ref|NP_176711.1| CBS domain-containing protein [Arabidopsis thaliana] gi|75244462|sp|Q8GZA4.1|CBSX6_ARATH RecName: Full=CBS domain-containing protein CBSX6 gi|26449327|dbj|BAC41791.1| unknown protein [Arabidopsis thaliana] gi|332196237|gb|AEE34358.1| CBS domain-containing protein [Arabidopsis thaliana]

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 321/437 (73%), Positives = 364/437 (83%), Gaps = 16/437 (3%)

Query: 1   MASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHV---GIIE 57
           MASVF+YHVVGDLTVGKPE+ EFYETETVE+AI+AIGESTECGIPVW+K+T     G +E
Sbjct: 1   MASVFLYHVVGDLTVGKPEMVEFYETETVESAIRAIGESTECGIPVWRKRTTPSLPGFVE 60

Query: 58  NGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLI 117
           N EMRQQRFVGILNS DIVAFLAK++CL++ +KAMK PVS+V+ P+N+LLKQVDPGTRLI
Sbjct: 61  NSEMRQQRFVGILNSLDIVAFLAKTECLQE-EKAMKIPVSEVVSPDNTLLKQVDPGTRLI 119

Query: 118 DALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSS 177
           DALEMMKQGVRRLLVPKSVVW+GMSKRFSILYNGKWLKN + S+SSS     + NRP++S
Sbjct: 120 DALEMMKQGVRRLLVPKSVVWRGMSKRFSILYNGKWLKNSENSSSSSGLSADSTNRPTTS 179

Query: 178 STTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATL 237
            T+S RDKFCCLSREDVIRFLIG LGALAPLPL+SIS+LG+IN NY+ IEAS+PAIEAT 
Sbjct: 180 MTSS-RDKFCCLSREDVIRFLIGVLGALAPLPLTSISTLGIINQNYNFIEASLPAIEATR 238

Query: 238 KAPGDPSAIAVLEPT-SEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV 296
           +   DPSAIAVLE T +E Q+KIIGEISASKLWKCDYLAAAWALANL AGQFVMGVEDN+
Sbjct: 239 RPLCDPSAIAVLEQTENEQQFKIIGEISASKLWKCDYLAAAWALANLYAGQFVMGVEDNM 298

Query: 297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMY 356
           + RSF D+   S        NG  +T  +KF SRSIGFNP+SP            GRSMY
Sbjct: 299 SSRSFSDFLQTSF--PGGEQNGT-ATNAKKFSSRSIGFNPTSPT-------RLSIGRSMY 348

Query: 357 RGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAA 416
           RGRS PLTCK +SSLAAVMAQMLSHRATHVWVTE +SDDVLVGVVGY +IL AVTKQP+A
Sbjct: 349 RGRSAPLTCKTSSSLAAVMAQMLSHRATHVWVTEADSDDVLVGVVGYGEILTAVTKQPSA 408

Query: 417 LTPANRTYEGFATEIQS 433
             P+NR+YEGF  E QS
Sbjct: 409 FVPSNRSYEGFGNENQS 425

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840957|ref|XP_002888360.1| hypothetical protein ARALYDRAFT_475589 [Arabidopsis lyrata subsp. lyrata] gi|297334201|gb|EFH64619.1| hypothetical protein ARALYDRAFT_475589 [Arabidopsis lyrata subsp. lyrata]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 321/438 (73%), Positives = 365/438 (83%), Gaps = 19/438 (4%)

Query: 1   MASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHV---GIIE 57
           MASVF+YHVVGDLTVGKPE+ EFYETETVE+AI+AIGESTECGIPVW+K++     G +E
Sbjct: 1   MASVFLYHVVGDLTVGKPEMVEFYETETVESAIRAIGESTECGIPVWRKRSTPNLPGFVE 60

Query: 58  NGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLI 117
           N EMRQQRFVGILNS DIVAFLAKS+CL++ +KAMK PVS+V+ P+N+LLKQVDPGTRLI
Sbjct: 61  NSEMRQQRFVGILNSLDIVAFLAKSECLQE-EKAMKIPVSEVVSPDNTLLKQVDPGTRLI 119

Query: 118 DALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSS 177
           DALEMMKQGVRRLLVPKSVVW+GMSKRFSILYNGKWLKN + S+SSS     + NRP ++
Sbjct: 120 DALEMMKQGVRRLLVPKSVVWRGMSKRFSILYNGKWLKNSENSSSSSGLAADSTNRP-TT 178

Query: 178 STTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATL 237
           S TS RDKFCCLSREDVIRFLIG LGALAPLPL+SIS+LG+IN NY+ IEA +PAIEAT 
Sbjct: 179 SMTSCRDKFCCLSREDVIRFLIGVLGALAPLPLTSISTLGIINQNYNFIEAYLPAIEATR 238

Query: 238 KAPGDPSAIAVLEPT-SEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV 296
           + P DPSAIAVLE T +E Q+KIIGEISASKLWKCDYLAAAWALANL AGQFVMGVEDN+
Sbjct: 239 RPPCDPSAIAVLEQTENEQQFKIIGEISASKLWKCDYLAAAWALANLYAGQFVMGVEDNM 298

Query: 297 TPRSFPDYSANSTL-RENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSM 355
           + RSF D+   S    E N     G+T+ +KF SRSIGFNP+SP            GRSM
Sbjct: 299 SSRSFSDFLQTSFPGGEQN-----GTTKAKKFSSRSIGFNPTSPT-------RLSIGRSM 346

Query: 356 YRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415
           YRGRS PLTCK +SSLAAVMAQMLSHRATHVWVTE +SDDVLVGVVGY +IL AVTKQP+
Sbjct: 347 YRGRSAPLTCKTSSSLAAVMAQMLSHRATHVWVTEADSDDVLVGVVGYGEILTAVTKQPS 406

Query: 416 ALTPANRTYEGFATEIQS 433
           A  P++R+YEGF  E QS
Sbjct: 407 AFVPSHRSYEGFGNENQS 424

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508444|gb|AFK42288.1| unknown [Medicago truncatula]

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 309/433 (71%), Positives = 359/433 (82%), Gaps = 13/433 (3%)

Query: 1   MASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGE 60
           MASV +YHVVGDLTVGKPEL EF+ETETVE+AI+AI ES E  IPVWKK++  G+IEN +
Sbjct: 1   MASVLVYHVVGDLTVGKPELVEFHETETVESAIRAIAESPEGSIPVWKKRSQ-GVIENSD 59

Query: 61  MRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDAL 120
           MRQ RFVGIL+SFD+V FLAKS CLEDQDKA+KTPVS+ +V NN LLK VDPGTRLIDAL
Sbjct: 60  MRQTRFVGILSSFDVVGFLAKSSCLEDQDKALKTPVSEFVVRNNYLLKLVDPGTRLIDAL 119

Query: 121 EMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTT 180
           +MMKQGV+RLLVPKS+VWKGMSKRFS++Y+GKWLKN ++ +SS+NNL  N N  +S+S  
Sbjct: 120 DMMKQGVKRLLVPKSIVWKGMSKRFSVIYHGKWLKNPESPSSSNNNLSVNLNGNTSAS-- 177

Query: 181 SVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAP 240
            +RDK+CCLSREDV+RF+IGCLGALAP+PL+SI++LG INPNYS IE+S PA+E+T K  
Sbjct: 178 -IRDKYCCLSREDVLRFIIGCLGALAPIPLTSIAALGAINPNYSYIESSTPALESTQKVL 236

Query: 241 GDPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS 300
            DPSA+AV+E  S+ Q KIIGEISA KLWKCDYL+AAWALANLSAGQFVMGVEDNVTP S
Sbjct: 237 QDPSAVAVIESMSDGQCKIIGEISAIKLWKCDYLSAAWALANLSAGQFVMGVEDNVTPGS 296

Query: 301 FPDYSANSTLRENNTVNGVGSTRP-RKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGR 359
            PD   N    +N+ VNG G +R  +KF SRSIGF  +SP      S SFG+ RSM+RGR
Sbjct: 297 PPDLCINPG-ADNDLVNGGGGSRKLKKFSSRSIGFFSNSP------SNSFGS-RSMFRGR 348

Query: 360 STPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTP 419
           STPLTCK+TSSLAAVMAQMLSHRATHVWVTEDE+DDVLVGVVGYADIL AVTK P    P
Sbjct: 349 STPLTCKMTSSLAAVMAQMLSHRATHVWVTEDENDDVLVGVVGYADILGAVTKPPTIFIP 408

Query: 420 ANRTYEGFATEIQ 432
           AN+  E F  EIQ
Sbjct: 409 ANKPIEEFGNEIQ 421

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
TAIR|locus:2206265	425	CBSX6 "AT1G65320" [Arabidopsis	0.972	0.990	0.663	1.4e-144
TAIR|locus:2164027	408	AT5G53750 "AT5G53750" [Arabido	0.882	0.936	0.260	2.2e-20
TAIR|locus:2123999	391	CBSX5 "AT4G27460" [Arabidopsis	0.535	0.593	0.253	8.5e-19
TAIR|locus:2037853	352	AT1G15330 "AT1G15330" [Arabido	0.281	0.346	0.291	1e-06

TAIR|locus:2206265 CBSX6 "AT1G65320" [Arabidopsis thaliana (taxid:3702)]

 Score = 1413 (502.5 bits), Expect = 1.4e-144, P = 1.4e-144
 Identities = 290/437 (66%), Positives = 330/437 (75%)

Query:     1 MASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHV---GIIE 57
             MASVF+YHVVGDLTVGKPE+ EFYETETVE+AI+AIGESTECGIPVW+K+T     G +E
Sbjct:     1 MASVFLYHVVGDLTVGKPEMVEFYETETVESAIRAIGESTECGIPVWRKRTTPSLPGFVE 60

Query:    58 NGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLI 117
             N EMRQQRFVGILNS DIVAFLAK++CL+++ KAMK PVS+V+ P+N+LLKQVDPGTRLI
Sbjct:    61 NSEMRQQRFVGILNSLDIVAFLAKTECLQEE-KAMKIPVSEVVSPDNTLLKQVDPGTRLI 119

Query:   118 DALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDXXXXXXXXXXXXXXRPSSS 177
             DALEMMKQGVRRLLVPKSVVW+GMSKRFSILYNGKWLKN +              RP++S
Sbjct:   120 DALEMMKQGVRRLLVPKSVVWRGMSKRFSILYNGKWLKNSENSSSSSGLSADSTNRPTTS 179

Query:   178 STTSVRDKFCCLSREDVIRFXXXXXXXXXXXXXXXXXXXGVINPNYSSIEASVPAIEATL 237
              T+S RDKFCCLSREDVIRF                   G+IN NY+ IEAS+PAIEAT 
Sbjct:   180 MTSS-RDKFCCLSREDVIRFLIGVLGALAPLPLTSISTLGIINQNYNFIEASLPAIEATR 238

Query:   238 KAPGDPSAIAVLEPT-SEDQYKIIGEISASKLWKCDYXXXXXXXXXXXXGQFVMGVEDNV 296
             +   DPSAIAVLE T +E Q+KIIGEISASKLWKCDY            GQFVMGVEDN+
Sbjct:   239 RPLCDPSAIAVLEQTENEQQFKIIGEISASKLWKCDYLAAAWALANLYAGQFVMGVEDNM 298

Query:   297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMY 356
             + RSF D+   S        NG  +T  +KF SRSIGFNP+SP    +R      GRSMY
Sbjct:   299 SSRSFSDFLQTSF--PGGEQNGT-ATNAKKFSSRSIGFNPTSP----TR---LSIGRSMY 348

Query:   357 RGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAA 416
             RGRS PLTCK +SSLAAVMAQMLSHRATHVWVTE +SDDVLVGVVGY +IL AVTKQP+A
Sbjct:   349 RGRSAPLTCKTSSSLAAVMAQMLSHRATHVWVTEADSDDVLVGVVGYGEILTAVTKQPSA 408

Query:   417 LTPANRTYEGFATEIQS 433
               P+NR+YEGF  E QS
Sbjct:   409 FVPSNRSYEGFGNENQS 425

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2164027 AT5G53750 "AT5G53750" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 2.2e-20, P = 2.2e-20
 Identities = 110/422 (26%), Positives = 179/422 (42%)

Query:     1 MASVFIYHVVGDLTVGKPELAEF-YETETVEAAIKAIGESTECGIPVWKKKTHVGIIENG 59
             MA   + H + DL +GKP L      T TV  AI A+  S E  + VW         +N 
Sbjct:     1 MALTLLSHELSDLCIGKPPLRCLSVATATVADAIAALKSSDEPFLTVWSCNHDEKTDDND 60

Query:    60 EMRQQRFVGILNSFDIVAFLAKSDC-LEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLID 118
             +      +G +   D++ +L+K D  +     A    VS ++  + +L+  V     LI+
Sbjct:    61 KCE---CLGKICMADVICYLSKFDNNVLSLSSAFDASVSVLLPKSRALVVHVQSSCSLIE 117

Query:   119 ALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDXXXXXXXXXXXXXXRPSSSS 178
             A++++ +G + L+VP  +  K ++KR       K LK                   +++S
Sbjct:   118 AIDLIIKGAQNLIVP--IHTKSITKRRQ---QQKLLKR-----------NVVVSLTNATS 161

Query:   179 TTSVRDK-FCCLSREDVIRFXXXXXXXXXXXXXXXXXXXGVINPNYSSI-----EASVPA 232
             TT    + FC +++ED+IRF                   GVIN  ++ +      ++  A
Sbjct:   162 TTHKNSREFCWITQEDIIRFLLDSISVFSPLPSLSISDLGVINSTHTILAVDYYSSAASA 221

Query:   233 IEATLKAPGDPSAIAVLEP--TSEDQYKI-IGEISASKLWKCDYXXXXXXXXXXXXGQFV 289
             + A  +A  D  ++AV+      ED   + IGEIS   L  CD             G  +
Sbjct:   222 VSAISRAILDNVSVAVVGKGCDQEDPCMVLIGEISPMTLACCD-ETAVAAVATLSAGDLM 280

Query:   290 MGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSF 349
               ++ +  P S      N  L +   V G+ S       S     +  SP      + S+
Sbjct:   281 SYIDGSGPPESLVGVVRNR-LEDKGMV-GLISLIDSLSLSSGSSSDEESPAGKTRMTSSY 338

Query:   350 GTGRS----MYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYAD 405
             G   S    M R +S  + C   SSL AVM Q ++HR ++VWV ++  D  L+G+V + D
Sbjct:   339 GRSVSSAARMAR-KSVAIVCNRKSSLMAVMIQAIAHRVSYVWVIDE--DGCLIGMVTFVD 395

Query:   406 IL 407
             IL
Sbjct:   396 IL 397

GO:0003674 "molecular_function" evidence=ND

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2123999 CBSX5 "AT4G27460" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 8.5e-19, Sum P(2) = 8.5e-19
 Identities = 62/245 (25%), Positives = 101/245 (41%)

Query:   176 SSSTTSVRDKFCCLSREDVIRFXXXXXXXXXXXXXXXXXXXGVINPNYSSI----EASVP 231
             +++T S   +FC +++ED+I+F                   GVIN  ++ +     +S  
Sbjct:   146 TTTTHSNGQRFCWITQEDIIQFLLGFIAAFSPLPAMSLSDLGVINSTHTVVAVDYHSSAS 205

Query:   232 AI-EATLKAPGDPSAIAVLEPTSEDQY-KIIGEISASKLWKCDYXXXXXXXXXXXXGQFV 289
             A+  A   A    +++AV++   +D +  +IGEIS   L  CD             G  +
Sbjct:   206 AVVSAVSNALAVQTSVAVVDGEGDDPFTSLIGEISPMTLTCCD-ETAAAAVATLSAGDLM 264

Query:   290 MGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPS--SPCLAASRSP 347
               ++    P S      N  L +   +  +         S S G++    +P    S   
Sbjct:   265 AYIDGANPPESLVQIVRNR-LEDKGLIGLMSLFDSLSSYSTSSGYSSEEEAPVRTTSYGR 323

Query:   348 SFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADIL 407
             S  +   M R +S  + C   SSL AVM Q ++HR  + WV E   D   VG+V + DIL
Sbjct:   324 SMSSSARMAR-KSEAIVCNPKSSLMAVMIQAVAHRVNYAWVVE--KDGCFVGMVTFVDIL 380

Query:   408 VAVTK 412
                 K
Sbjct:   381 KVFRK 385

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037853 AT1G15330 "AT1G15330" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
 Identities = 39/134 (29%), Positives = 67/134 (50%)

Query:    12 DLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTH-VG-----IIENGEMR--- 62
             DLTV    L E   T T+  A+  +  ++   +PV     H +G     I+E+ +     
Sbjct:    20 DLTVRNRRLVEVPYTATLSHAMNTLVANSISALPVAAPPGHWIGAGGSMIMESDKQTGVV 79

Query:    63 QQRFVGILNSFDIVAFLAKSDC-LEDQDKAMKTPVSQVI--VPNNSLLKQVDPGTRLIDA 119
             ++ ++GIL   DI+A +A  D  L D D+ M + VS +I        L  ++P T +++ 
Sbjct:    80 RKHYIGILTMLDILAHIAGEDSNLSDLDRKMSSQVSSIIGHCLEGLSLWTLNPNTSVLEC 139

Query:   120 LEMMKQGVRRLLVP 133
             +E+  +G+ R LVP
Sbjct:   140 MEVFSKGIHRALVP 153

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0003006 "developmental process involved in reproduction" evidence=IMP

GO:0009553 "embryo sac development" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0010183 "pollen tube guidance" evidence=IMP

GO:0048443 "stamen development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GZA4	CBSX6_ARATH	No assigned EC number	0.7345	0.9722	0.9905	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	433
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	3e-05
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-04
pfam00571	57	pfam00571, CBS, CBS domain	5e-04
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	7e-04
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	8e-04

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 12/84 (14%)

Query: 55  IIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDK-----AMKTPVSQVIVPNNSLLKQ 109
           +++ G     + VGI+ + DI+ +L   +            A+  PV  ++  N   +  
Sbjct: 29  VVDEGT---GKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRN---VIT 82

Query: 110 VDPGTRLIDALEMMKQ-GVRRLLV 132
           + P   + DA E+M +  V  L V
Sbjct: 83  ITPDDSIKDAAELMLEKRVGGLPV 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 23/110 (20%)

Query: 24  YETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83
              +TV  A++ + E    G+PV                  R VGI+   D++  LA+  
Sbjct: 7   SPDDTVAEALRLMLEHGISGLPVVDD-------------DGRLVGIVTERDLLRALAEGG 53

Query: 84  CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMM-KQGVRRLLV 132
                       V  V+  +   +  V P T L +A E+M + G+RRL V
Sbjct: 54  ------LDPLVTVGDVMTRD---VVTVSPDTSLEEAAELMLEHGIRRLPV 94

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 37.5 bits (88), Expect = 5e-04
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 359 RSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412
               +T    +SL   +  M  +  + + V ++  D  LVG+V   D+L A+ +
Sbjct: 6   TPDVVTVPPDTSLEEALELMRENGISRLPVVDE--DGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 360 STPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAV 410
              +T     ++A  +  ML H  + + V +D  D  LVG+V   D+L A+
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDD--DGRLVGIVTERDLLRAL 49

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 38.7 bits (91), Expect = 8e-04
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 11/71 (15%)

Query: 63  QQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEM 122
             R +GI+   DI+  LA    L+       TPV +V+   +S L  V   T L DA ++
Sbjct: 32  DGRPLGIVTERDILRLLASGPDLQ-------TPVGEVM---SSPLLTVPADTSLYDARQL 81

Query: 123 MKQ-GVRRLLV 132
           M++ G+R L+V
Sbjct: 82  MREHGIRHLVV 92

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	433
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.98
COG2524	294	Predicted transcriptional regulator, contains C-te	99.68
COG2524	294	Predicted transcriptional regulator, contains C-te	99.66
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.58
COG3620	187	Predicted transcriptional regulator with C-termina	99.56
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.55
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.52
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.51
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.49
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.48
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.46
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.45
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.45
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.44
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.43
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.43
COG2905	610	Predicted signal-transduction protein containing c	99.4
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.4
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.4
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.39
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.39
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.38
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.37
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.37
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.36
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.35
COG3620	187	Predicted transcriptional regulator with C-termina	99.35
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.35
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.35
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.35
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.35
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.34
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.34
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.34
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.33
COG2905	610	Predicted signal-transduction protein containing c	99.33
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.33
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.32
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.31
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.31
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.31
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.3
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.3
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.3
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.3
COG0517	117	FOG: CBS domain [General function prediction only]	99.3
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.3
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.29
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.29
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.29
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.29
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.29
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.28
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.28
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.28
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.28
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.28
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.28
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.28
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.27
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.27
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.27
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.26
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.26
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.25
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.25
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.25
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.25
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.25
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.25
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.24
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.24
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.24
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.23
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.23
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.23
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.23
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.23
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.22
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.22
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.22
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.22
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.22
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.22
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.22
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.22
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.22
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.22
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.21
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.21
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.21
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.21
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.21
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.21
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.2
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.2
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.2
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.2
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.2
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.2
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.19
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.19
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.19
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.18
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.18
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.18
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.18
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.17
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.17
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.17
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.17
COG0517	117	FOG: CBS domain [General function prediction only]	99.17
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.17
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.17
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.17
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.17
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.17
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.17
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.16
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.16
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.16
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.16
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.15
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.15
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.15
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.14
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.14
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.14
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.13
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.13
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.13
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.12
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.12
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.12
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.12
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.11
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.11
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.11
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.1
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.1
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.1
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.1
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.1
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.09
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.09
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.09
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.09
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.08
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.07
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.05
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.05
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.05
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.05
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.03
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.02
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.02
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.02
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.01
COG4109	432	Predicted transcriptional regulator containing CBS	99.01
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.01
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.0
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.99
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.99
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.99
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.98
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.98
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.98
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.97
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.96
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.94
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.93
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.91
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.83
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.82
PRK11573	413	hypothetical protein; Provisional	98.8
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.77
PRK11573	413	hypothetical protein; Provisional	98.69
COG4109	432	Predicted transcriptional regulator containing CBS	98.57
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.57
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.53
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.47
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.37
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.22
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.21
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.17
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.02
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	97.98
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	97.93
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.88
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.8
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.76
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.66
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.54
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	97.53
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	97.44
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	97.26
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	97.11
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	96.78
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	96.49
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	95.74
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	94.56
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	93.67
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	91.13
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	84.24
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	80.32

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.98  E-value=1.4e-31  Score=274.45  Aligned_cols=301  Identities=24%  Similarity=0.336  Sum_probs=239.9

Q ss_pred             ccccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcC
Q 013939            3 SVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKS   82 (433)
Q Consensus         3 ~~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~   82 (433)
                      .++..|++.|++....+++.++...++.+|+.+|..++..++|+||..            ..+++|++++.|++.++...
T Consensus        61 ~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~------------~~~~~g~~~~~d~i~~~~~~  128 (381)
T KOG1764|consen   61 KFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSK------------KQQFVGMLTITDFITVLLRY  128 (381)
T ss_pred             HHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCc------------cceeEEEEEHHHHHHHHHHh
Confidence            356778899999888899999999999999999999999999999986            37999999999999988642


Q ss_pred             CC--c--chHHh---h---cCCcchhccccCCC-ccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhcc
Q 013939           83 DC--L--EDQDK---A---MKTPVSQVIVPNNS-LLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYN  150 (433)
Q Consensus        83 ~~--l--~~~~~---~---l~~pV~~Im~~~~~-~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~  150 (433)
                      ..  .  .+...   .   ...++..+-..... +++.+.|..+++++...+. .++||+||.+...             
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~-------------  195 (381)
T KOG1764|consen  129 YKSKSSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPET-------------  195 (381)
T ss_pred             hccCCcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeecccc-------------
Confidence            11  1  11111   1   12344444443333 3499999999999999998 7999999976211             


Q ss_pred             ccccccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCC--CCCCCCCcccccCcCCC-eEEEc
Q 013939          151 GKWLKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGAL--APLPLSSISSLGVINPN-YSSIE  227 (433)
Q Consensus       151 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l--~~l~~~tV~~L~im~~~-vitv~  227 (433)
                                                      +.+.+++||..|++|++.+...+  ..+..+++.+|++.+-. +..+.
T Consensus       196 --------------------------------~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~  243 (381)
T KOG1764|consen  196 --------------------------------GEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASIS  243 (381)
T ss_pred             --------------------------------cceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheeec
Confidence                                            25688999999999999887766  47889999999998865 99999


Q ss_pred             CCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCCCCcc-
Q 013939          228 ASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYS-  305 (433)
Q Consensus       228 ~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~-  305 (433)
                      .++++.+|+++|.+ +++++||||.  .|  +.+|++|-.|+++....+.           |-          .+.. . 
T Consensus       244 ~~~~v~~al~~m~~~~is~lpvV~~--~g--~~v~~~s~~Dv~~l~~~~~-----------~~----------~~~~-~~  297 (381)
T KOG1764|consen  244 EDTPVIEALKIMSERRISALPVVDE--NG--KKVGNYSRFDVIHLAREGT-----------YN----------NLDL-SC  297 (381)
T ss_pred             CCCcHHHHHHHHHhcCcCcceEEcC--CC--ceecceehhhhhhhhhcCc-----------cC----------ccch-hH
Confidence            99999999999999 9999999998  77  7799999999998652110           00          0000 0 


Q ss_pred             cccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCE
Q 013939          306 ANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATH  385 (433)
Q Consensus       306 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhr  385 (433)
                      +..    .                                    .++|  ...+.+++||++++||.+++++|+++++||
T Consensus       298 l~~----~------------------------------------~~~~--~~~~~~vvtc~~~ssL~~vi~~lv~~~vHR  335 (381)
T KOG1764|consen  298 LSE----A------------------------------------LSHR--PIRFEGVVTCRPTSTLAEVIDKLVAHRVHR  335 (381)
T ss_pred             HHH----H------------------------------------hhhc--ccccCccEEEeecchHHHHHHHHHhcCceE
Confidence            000    0                                    0001  113556999999999999999999999999


Q ss_pred             EEEEeCCCCCeEEEEEeHHHHHHHHHhCCCCcCCCCCCccccccc
Q 013939          386 VWVTEDESDDVLVGVVGYADILVAVTKQPAALTPANRTYEGFATE  430 (433)
Q Consensus       386 l~VVD~~~~~~lvGIVs~~DIL~~i~~~~~~~~~~~~~~~~~~~~  430 (433)
                      +||||++  |+++||||++||+.++..+|.+-.|..+.++.+.-+
T Consensus       336 l~VVd~~--~~l~GvvSLsDil~~l~~~p~~~~~~~~~~~~~~~~  378 (381)
T KOG1764|consen  336 LWVVDED--GVLVGVISLSDILSYLVLTPSGGTPDAPSSSMSTSE  378 (381)
T ss_pred             EEEEcCC--CcEEEEeeHHHHHHHHHhCccCCCCCCcCccccccC
Confidence            9999998  999999999999999999999999999988887654

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.68  E-value=2.9e-16  Score=150.50  Aligned_cols=120  Identities=25%  Similarity=0.349  Sum_probs=106.6

Q ss_pred             chhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcc
Q 013939            7 YHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLE   86 (433)
Q Consensus         7 ~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~   86 (433)
                      ..+|.+++  +++++++.+++|+.+|.+.+++++|.++||+|.              ++++||+|..||...+++.    
T Consensus       171 k~~V~~~~--s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~--------------dk~vGiit~~dI~~aia~g----  230 (294)
T COG2524         171 KEKVKNLM--SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD--------------DKIVGIITLSDIAKAIANG----  230 (294)
T ss_pred             cchhhhhc--cCCceEecCCccHHHHHHHHHHcCccCCceecC--------------CceEEEEEHHHHHHHHHcC----
Confidence            34678877  488999999999999999999999999999995              6999999999999988764    


Q ss_pred             hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccc
Q 013939           87 DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSN  165 (433)
Q Consensus        87 ~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~  165 (433)
                          .++.+|+++|.++   ++++++++.+.||+++|. +|++|++|.+..+                            
T Consensus       231 ----~~~~kV~~~M~k~---vitI~eDe~i~dAir~M~~~nVGRLlV~ds~g----------------------------  275 (294)
T COG2524         231 ----NLDAKVSDYMRKN---VITINEDEDIYDAIRLMNKNNVGRLLVTDSNG----------------------------  275 (294)
T ss_pred             ----CccccHHHHhccC---CceEcCchhHHHHHHHHHhcCcceEEEEccCC----------------------------
Confidence                2458999999987   999999999999999999 8999999987532                            


Q ss_pred             ccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHH
Q 013939          166 NLIANANRPSSSSTTSVRDKFCCLSREDVIRFLI  199 (433)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~  199 (433)
                                        +.+||||.+||++-++
T Consensus       276 ------------------kpvGiITrTDIL~~ia  291 (294)
T COG2524         276 ------------------KPVGIITRTDILTRIA  291 (294)
T ss_pred             ------------------cEEEEEehHHHHHHhh
Confidence                              4689999999999775

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.66  E-value=2.7e-16  Score=150.78  Aligned_cols=128  Identities=19%  Similarity=0.242  Sum_probs=108.6

Q ss_pred             CCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHh
Q 013939          203 GALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALA  281 (433)
Q Consensus       203 ~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~  281 (433)
                      ..+..++..++.+  +|+++++++.+++|+.+|.+.+.+ ++++.||+|+   +  |++|+||.+|+....        +
T Consensus       164 ~~m~siPk~~V~~--~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~---d--k~vGiit~~dI~~ai--------a  228 (294)
T COG2524         164 SKMVSIPKEKVKN--LMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD---D--KIVGIITLSDIAKAI--------A  228 (294)
T ss_pred             eeeeecCcchhhh--hccCCceEecCCccHHHHHHHHHHcCccCCceecC---C--ceEEEEEHHHHHHHH--------H
Confidence            4456678888887  699999999999999999999999 9999999995   7  999999999997543        1


Q ss_pred             hccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCC
Q 013939          282 NLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRST  361 (433)
Q Consensus       282 ~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (433)
                      .                              .+++.             ++  +                    ..|+++
T Consensus       229 ~------------------------------g~~~~-------------kV--~--------------------~~M~k~  243 (294)
T COG2524         229 N------------------------------GNLDA-------------KV--S--------------------DYMRKN  243 (294)
T ss_pred             c------------------------------CCccc-------------cH--H--------------------HHhccC
Confidence            1                              01110             11  0                    237999


Q ss_pred             CeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          362 PLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       362 ~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      ++|+..|+.+.+|+++|..++++||-|+|++  |+|+||||++|||+.++.
T Consensus       244 vitI~eDe~i~dAir~M~~~nVGRLlV~ds~--gkpvGiITrTDIL~~ia~  292 (294)
T COG2524         244 VITINEDEDIYDAIRLMNKNNVGRLLVTDSN--GKPVGIITRTDILTRIAG  292 (294)
T ss_pred             CceEcCchhHHHHHHHHHhcCcceEEEEccC--CcEEEEEehHHHHHHhhc
Confidence            9999999999999999999999999999998  999999999999999874

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=1.3e-14  Score=120.87  Aligned_cols=94  Identities=11%  Similarity=0.117  Sum_probs=83.8

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      .++++.+++++.+|+++|.+ +++++||+|+  + |  +++|+||.+|+.+..                           
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~--~~~--~~~Givt~~Dl~~~~---------------------------   50 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDS--RKQ--QFVGMLTITDFILIL---------------------------   50 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeC--CCC--EEEEEEEHHHHhhhe---------------------------
Confidence            47899999999999999999 8999999996  4 6  999999999985321                           


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML  379 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~  379 (433)
                                                                                 .  +++|+|+++|.+|+++|.
T Consensus        51 -----------------------------------------------------------~--~~~v~~~~~l~~a~~~m~   69 (98)
T cd04618          51 -----------------------------------------------------------R--LVSIHPERSLFDAALLLL   69 (98)
T ss_pred             -----------------------------------------------------------e--eEEeCCCCcHHHHHHHHH
Confidence                                                                       1  678999999999999999


Q ss_pred             HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          380 SHRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      +++++++||+|++ +|+++|+||.+||++
T Consensus        70 ~~~~~~lpVvd~~-~~~~~giit~~d~~~   97 (98)
T cd04618          70 KNKIHRLPVIDPS-TGTGLYILTSRRILK   97 (98)
T ss_pred             HCCCCEeeEEECC-CCCceEEeehhhhhc
Confidence            9999999999973 379999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.56  E-value=2.3e-14  Score=128.78  Aligned_cols=120  Identities=15%  Similarity=0.280  Sum_probs=99.6

Q ss_pred             hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939            9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ   88 (433)
Q Consensus         9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~   88 (433)
                      ++.++|  +.++|++.+++++.+|+++|.++||+++||++.              +++||-||+.||++.++++.     
T Consensus        66 ta~~iM--~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--------------~k~VGsItE~~iv~~~le~~-----  124 (187)
T COG3620          66 TAKTIM--HSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE--------------DKVVGSITENDIVRALLEGM-----  124 (187)
T ss_pred             eHhhhc--cCCeeEECchhhHHHHHHHHHHcCCccCceeeC--------------CeeeeeecHHHHHHHHhccc-----
Confidence            355665  488999999999999999999999999999995              79999999999999988751     


Q ss_pred             HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHHcCCCeEEeeecCcccccccchhhhccccccccccccCccccccc
Q 013939           89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLI  168 (433)
Q Consensus        89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~  168 (433)
                      ....+..|+++|+.   +|++|+++++|..+-.++ ++...++|..+                                 
T Consensus       125 e~i~~~~vr~vM~e---~fP~Vs~~~~l~vI~~LL-~~~~AVlV~e~---------------------------------  167 (187)
T COG3620         125 ESIRSLRVREVMGE---PFPTVSPDESLNVISQLL-EEHPAVLVVEN---------------------------------  167 (187)
T ss_pred             cchhhhhHHHHhcC---CCCcCCCCCCHHHHHHHH-hhCCeEEEEeC---------------------------------
Confidence            22335789999995   599999999998776655 66677777643                                 


Q ss_pred             cccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          169 ANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                    |+.+||||+.||++++.+
T Consensus       168 --------------G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         168 --------------GKVVGIITKADIMKLLAG  185 (187)
T ss_pred             --------------CceEEEEeHHHHHHHHhc
Confidence                          346899999999999864

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=2.9e-14  Score=121.29  Aligned_cols=118  Identities=14%  Similarity=0.200  Sum_probs=90.1

Q ss_pred             CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939          221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      ++++++.+++++.+|++.|.+ +++++||+++  +|  +++|+++.+|++.......    .                 .
T Consensus         1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~--~~--~~~Giv~~~dl~~~~~~~~----~-----------------~   55 (120)
T cd04641           1 KNIATARPDTPLIDVLDMLVERRVSALPIVDE--NG--KVVDVYSRFDVINLAKEGA----Y-----------------N   55 (120)
T ss_pred             CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECC--CC--eEEEEEeHHHHHHHHhcCc----c-----------------c
Confidence            357899999999999999999 8999999997  78  9999999999986421000    0                 0


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML  379 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~  379 (433)
                      .... .+                  ..+    ..               .     ...+..++.+|.+++++.+++++|.
T Consensus        56 ~~~~-~~------------------~~~----~~---------------~-----~~~~~~~~~~v~~~~~l~~~~~~m~   92 (120)
T cd04641          56 NLDL-TV------------------GEA----LE---------------R-----RSQDFEGVRTCSPDDCLRTIFDLIV   92 (120)
T ss_pred             cccC-CH------------------HHH----Hh---------------h-----cccCCCCCeEEcCCCcHHHHHHHHH
Confidence            0000 00                  000    00               0     0113567899999999999999999


Q ss_pred             HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          380 SHRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      +++++++||+|++  |+++||||+.||++
T Consensus        93 ~~~~~~l~Vvd~~--~~~~Givt~~di~~  119 (120)
T cd04641          93 KARVHRLVVVDEN--KRVEGIISLSDILQ  119 (120)
T ss_pred             hcCccEEEEECCC--CCEEEEEEHHHhhc
Confidence            9999999999987  89999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.52  E-value=4.2e-14  Score=137.99  Aligned_cols=125  Identities=15%  Similarity=0.229  Sum_probs=102.9

Q ss_pred             cCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccC
Q 013939          217 GVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDN  295 (433)
Q Consensus       217 ~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~  295 (433)
                      ++|+++|+|+.+++++-+|.++|.+ ++.++||+|+  +.  +++||++.+||.+-..                      
T Consensus       249 dIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~--~~--rl~GiVt~~dl~~~a~----------------------  302 (382)
T COG3448         249 DIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE--HR--RLVGIVTQRDLLKHAR----------------------  302 (382)
T ss_pred             HhcCccceecCCcCChHHHHHHHHHcCccccccccc--cc--ceeeeeeHHHHhhccC----------------------
Confidence            5899999999999999999999999 9999999998  66  9999999999986431                      


Q ss_pred             CCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHH
Q 013939          296 VTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVM  375 (433)
Q Consensus       296 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~  375 (433)
                        |..|.+      ++  -..+            .+                      ....|+.++.|++|+++..+.+
T Consensus       303 --~~p~qr------lr--~~~~------------~~----------------------vk~imt~~v~tv~pdtpa~~lv  338 (382)
T COG3448         303 --PSPFQR------LR--FLRP------------PT----------------------VKGIMTTPVVTVRPDTPAVELV  338 (382)
T ss_pred             --cchHHH------hh--ccCC------------Cc----------------------ccccccCcceeecCCCcHHHHH
Confidence              111111      00  0000            00                      0144799999999999999999


Q ss_pred             HHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          376 AQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       376 ~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      -.+.+.+.|++||+|++  |+++||||.+|++.++.++
T Consensus       339 p~lad~g~H~lpvld~~--g~lvGIvsQtDliaal~r~  374 (382)
T COG3448         339 PRLADEGLHALPVLDAA--GKLVGIVSQTDLIAALYRN  374 (382)
T ss_pred             HHhhcCCcceeeEEcCC--CcEEEEeeHHHHHHHHHHH
Confidence            99999999999999999  9999999999999999874

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.51  E-value=1.2e-13  Score=116.23  Aligned_cols=108  Identities=18%  Similarity=0.167  Sum_probs=88.6

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.+++++.+|++.|.+ +.+.++|+|+  +|  +++|+||..|+++....    .                  +  
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~--~~--~~~G~v~~~dl~~~~~~----~------------------~--   53 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDE--EN--KVLGQVTLSDLLEIGPN----D------------------Y--   53 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC--CC--CEEEEEEHHHHHhhccc----c------------------c--
Confidence            46789999999999999988 8899999997  78  99999999999764200    0                  0  


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                  ..               ..+  .                    ..|..++.++.+++++.+|+.+|.+
T Consensus        54 ------------~~---------------~~v--~--------------------~~~~~~~~~v~~~~~l~~al~~m~~   84 (111)
T cd04603          54 ------------ET---------------LKV--C--------------------EVYIVPVPIVYCDSKVTDLLRIFRE   84 (111)
T ss_pred             ------------cc---------------cCh--h--------------------heeecCCcEECCCCcHHHHHHHHHH
Confidence                        00               000  0                    1246678899999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||||++  |+++|+||.+||++
T Consensus        85 ~~~~~lpVvd~~--~~~~Giit~~di~~  110 (111)
T cd04603          85 TEPPVVAVVDKE--GKLVGTIYERELLR  110 (111)
T ss_pred             cCCCeEEEEcCC--CeEEEEEEhHHhhc
Confidence            999999999987  99999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=2e-13  Score=112.89  Aligned_cols=94  Identities=19%  Similarity=0.262  Sum_probs=84.7

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.+++++.+|++.|.+ +++.+||+|+  +|  +++|+++.+|+++..                            
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~--~~~Giv~~~dl~~~~----------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDD--DG--KLSGIITERDLIAKS----------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECC--CC--CEEEEEEHHHHhcCC----------------------------
Confidence            57899999999999999988 8999999997  78  999999999986321                            


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                                                                  .+.+|.+++++.+++.+|.+
T Consensus        50 ------------------------------------------------------------~~~~v~~~~~l~~a~~~m~~   69 (96)
T cd04614          50 ------------------------------------------------------------EVVTATKRTTVSECAQKMKR   69 (96)
T ss_pred             ------------------------------------------------------------CcEEecCCCCHHHHHHHHHH
Confidence                                                                        16788999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILVA  409 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~~  409 (433)
                      ++++++||+|++  |+++|+||++||+++
T Consensus        70 ~~~~~lpVv~~~--~~~~Giit~~di~~~   96 (96)
T cd04614          70 NRIEQIPIINGN--DKLIGLLRDHDLLKP   96 (96)
T ss_pred             hCCCeeeEECCC--CcEEEEEEHHHhhcC
Confidence            999999999997  899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.48  E-value=1.7e-13  Score=133.74  Aligned_cols=132  Identities=17%  Similarity=0.238  Sum_probs=108.0

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      +|.--+|+|+|  +++|+++.+++++.+|.++|.+++|+.+||.|++             .+++||||.+|++...-.. 
T Consensus       241 ~~~~LtcadIM--SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-------------~rl~GiVt~~dl~~~a~~~-  304 (382)
T COG3448         241 RMGELTCADIM--SRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEH-------------RRLVGIVTQRDLLKHARPS-  304 (382)
T ss_pred             HhccccHHHhc--CccceecCCcCChHHHHHHHHHcCcccccccccc-------------cceeeeeeHHHHhhccCcc-
Confidence            45556789988  4999999999999999999999999999999974             7999999999998843210 


Q ss_pred             CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939           84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS  162 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  162 (433)
                      .+.-.+..-...|+.+|+.   ++.++.|+++..|++-.|. .|.|.+||.+..                          
T Consensus       305 p~qrlr~~~~~~vk~imt~---~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~--------------------------  355 (382)
T COG3448         305 PFQRLRFLRPPTVKGIMTT---PVVTVRPDTPAVELVPRLADEGLHALPVLDAA--------------------------  355 (382)
T ss_pred             hHHHhhccCCCcccccccC---cceeecCCCcHHHHHHHhhcCCcceeeEEcCC--------------------------
Confidence            1110122235779999995   4999999999999999999 789999998653                          


Q ss_pred             cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                          |+++|||||+|+|.-++.
T Consensus       356 --------------------g~lvGIvsQtDliaal~r  373 (382)
T COG3448         356 --------------------GKLVGIVSQTDLIAALYR  373 (382)
T ss_pred             --------------------CcEEEEeeHHHHHHHHHH
Confidence                                357999999999998875

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=3.8e-13  Score=115.52  Aligned_cols=124  Identities=26%  Similarity=0.354  Sum_probs=91.5

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.+++++.+|++.|.+ +++++||+|+  +|  +++|+++.+|++......  +.....+...+..          
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~--~~--~~~Giv~~~dl~~~~~~~--~~~~~~~~~~~~~----------   65 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE--KG--KLIGNISASDLKGLLLSP--DDLLLYRTITFKE----------   65 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECC--CC--cEEEEEEHHHhhhhhcCc--chhhcccchhhhh----------
Confidence            47899999999999999988 8999999998  78  999999999998753110  0000000000000          


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                               +...             +.  .                      .+..+..++++|.+++++.+++.+|.+
T Consensus        66 ---------~~~~-------------~~--~----------------------~~~~~~~~~~~v~~~~~l~~a~~~~~~   99 (126)
T cd04642          66 ---------LSEK-------------FT--D----------------------SDGVKSRPLITCTPSSTLKEVITKLVA   99 (126)
T ss_pred             ---------hhhh-------------cc--c----------------------ccccccCCCeEECCCCcHHHHHHHHHH
Confidence                     0000             00  0                      002256789999999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILVA  409 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~~  409 (433)
                      ++.+++||+|++  ++++|+||.+||+++
T Consensus       100 ~~~~~l~Vvd~~--~~~~Giit~~dil~~  126 (126)
T cd04642         100 NKVHRVWVVDEE--GKPIGVITLTDIISI  126 (126)
T ss_pred             hCCcEEEEECCC--CCEEEEEEHHHHhcC
Confidence            999999999987  899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=4.9e-13  Score=112.90  Aligned_cols=110  Identities=14%  Similarity=0.156  Sum_probs=88.8

Q ss_pred             eEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCC
Q 013939          223 YSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSF  301 (433)
Q Consensus       223 vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~  301 (433)
                      |.++.+++++.+|++.|.+ +...+||+|+  +|  +++|++|.+|++++...        .         . .      
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~--~g--~~~G~vt~~dl~~~~~~--------~---------~-~------   54 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP--HG--KLAGVLTKTDVVRQMGR--------C---------G-G------   54 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECC--CC--CEEEEEehHHHHHHHhh--------c---------C-C------
Confidence            7789999999999999988 8999999998  78  99999999999764200        0         0 0      


Q ss_pred             CCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHc
Q 013939          302 PDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSH  381 (433)
Q Consensus       302 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~  381 (433)
                                 .. ..            ..+      +                ..+..++++|++++++.+++..|.++
T Consensus        55 -----------~~-~~------------~~v------~----------------~~~~~~~~~v~~~~~l~~a~~~m~~~   88 (114)
T cd04619          55 -----------PG-CT------------APV------E----------------NVMTRAVVSCRPGDLLHDVWQVMKQR   88 (114)
T ss_pred             -----------Cc-cc------------CCH------H----------------HHhcCCCeeECCCCCHHHHHHHHHHc
Confidence                       00 00            000      0                22467889999999999999999999


Q ss_pred             CCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          382 RATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       382 ~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      +++++||+|++  |+++|+||++|+++
T Consensus        89 ~~~~lpVvd~~--~~~~Gvi~~~dl~~  113 (114)
T cd04619          89 GLKNIPVVDEN--ARPLGVLNARDALK  113 (114)
T ss_pred             CCCeEEEECCC--CcEEEEEEhHhhcc
Confidence            99999999987  89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=7.2e-13  Score=110.28  Aligned_cols=80  Identities=29%  Similarity=0.469  Sum_probs=70.9

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      .++++++++++.+|++.|.++++.++||+|++            +++++|++|..|+.+.+.                  
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~------------~~~~~Givt~~Dl~~~~~------------------   51 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSR------------KQQFVGMLTITDFILILR------------------   51 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCC------------CCEEEEEEEHHHHhhhee------------------
Confidence            47899999999999999999999999999863            268999999999976421                  


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV  136 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~  136 (433)
                              ++++.|+++|.+|++.|. ++++++||.+++
T Consensus        52 --------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~   82 (98)
T cd04618          52 --------LVSIHPERSLFDAALLLLKNKIHRLPVIDPS   82 (98)
T ss_pred             --------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECC
Confidence                    678999999999999999 889999998653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.44  E-value=2.4e-13  Score=146.16  Aligned_cols=285  Identities=13%  Similarity=0.099  Sum_probs=176.6

Q ss_pred             hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC---
Q 013939            8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC---   84 (433)
Q Consensus         8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~---   84 (433)
                      .+|+|++.  ++++++++++++.+|+++|.++++..+||+|.+             ++++|+||..||..++.+...   
T Consensus        68 ~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-------------g~l~Givt~~di~~~~~~~~~~~~  132 (546)
T PRK14869         68 PQVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-------------GKLLGLVSLSDLARAYMDILDPEI  132 (546)
T ss_pred             CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CEEEEEEEHHHHHHHHHhhcchhh
Confidence            47899885  678999999999999999999999999999963             799999999999997664211   


Q ss_pred             cc-------hHHhhcCC------------------------cchhccccCCCccEEeCCCCcHHHHHHHHHcCCCeEEee
Q 013939           85 LE-------DQDKAMKT------------------------PVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVP  133 (433)
Q Consensus        85 l~-------~~~~~l~~------------------------pV~~Im~~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~  133 (433)
                      +.       ++.+.++-                        .+.+.|.+  +.++.+.....+..+  .+.+|++.++|.
T Consensus       133 ~~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~--~~lvi~gdr~d~~~~--ai~~~~~~lIlt  208 (546)
T PRK14869        133 LSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEE--GDIVIVGDREDIQLA--AIEAGVRLLIIT  208 (546)
T ss_pred             hhhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccC--CCEEEEcCcHHHHHH--HHHcCCCEEEEC
Confidence            11       11111110                        11112222  235555444444332  233778877664


Q ss_pred             ecCcccccccchhhhccccccccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCc
Q 013939          134 KSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSI  213 (433)
Q Consensus       134 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV  213 (433)
                      .....   +..  +      +           .+            .....+..|+|+.|..+....    +.  ...+|
T Consensus       209 ~g~~~---~~~--v------~-----------~l------------a~~~~i~ii~t~~dt~~t~~~----l~--~~~~V  248 (546)
T PRK14869        209 GGAPV---SED--V------L-----------EL------------AKENGVTVISTPYDTFTTARL----IN--QSIPV  248 (546)
T ss_pred             CCCCC---CHH--H------H-----------HH------------HHhCCCeEEEecccHHHHHHH----hh--cCCCH
Confidence            32210   000  0      0           00            012245678999999887643    11  13456


Q ss_pred             ccccCcC-CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhc
Q 013939          214 SSLGVIN-PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMG  291 (433)
Q Consensus       214 ~~L~im~-~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~  291 (433)
                      ++  +|+ ++++++.+++++.+|.++|.+ ++..+||||+  +|  +++|+||.+||...... .           + ..
T Consensus       249 ~~--iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~--~g--~lvGiit~~dl~~~~~~-~-----------~-iL  309 (546)
T PRK14869        249 SY--IMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE--DG--KVVGVISRYHLLSPVRK-K-----------V-IL  309 (546)
T ss_pred             HH--hccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC--CC--CEEEEEEHHHhhccccC-c-----------e-EE
Confidence            65  699 899999999999999999999 8999999998  78  99999999999875311 0           0 00


Q ss_pred             cccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEe---cCC
Q 013939          292 VEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTC---KIT  368 (433)
Q Consensus       292 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~---~p~  368 (433)
                      ++.+...+.+..      +.+...        ..-+.    +                  |+-...++..++++   ...
T Consensus       310 VD~~e~~q~~~~------~~~~~i--------~~iiD----H------------------H~~~~~~~~~pi~~~~~~~g  353 (546)
T PRK14869        310 VDHNEKSQAVEG------IEEAEI--------LEIID----H------------------HRLGDIQTSNPIFFRNEPVG  353 (546)
T ss_pred             EcCccccccccc------hhhceE--------EEEec----C------------------CccCCCCCCCCcEEEeeeee
Confidence            111111000000      000000        00000    0                  00001235555544   335


Q ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939          369 SSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVA  409 (433)
Q Consensus       369 ~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~  409 (433)
                      ++-.-+...|.++++.-.|++..   ..+.||+|-++.++.
T Consensus       354 st~tiv~~~~~~~~i~~~~~ia~---~ll~gIlsDT~~f~~  391 (546)
T PRK14869        354 STSTIVARMYRENGIEPSPEIAG---LLLAAILSDTLLFKS  391 (546)
T ss_pred             eHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHhcCccC
Confidence            66667888888999998888877   589999999998764

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.43  E-value=5.2e-13  Score=134.41  Aligned_cols=118  Identities=19%  Similarity=0.222  Sum_probs=94.7

Q ss_pred             CcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhh
Q 013939          212 SISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQF  288 (433)
Q Consensus       212 tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f  288 (433)
                      ++++  +|++  +++++.+++++.+|++.|.+ +++.+||+|+  +|  +++|+||.+|+++..        ..      
T Consensus       203 ~V~d--im~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~--~g--~lvGivt~~Dl~~~~--------~~------  262 (326)
T PRK10892        203 RVSD--IMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD--NM--KIEGIFTDGDLRRVF--------DM------  262 (326)
T ss_pred             cHHH--HhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC--CC--cEEEEEecHHHHHHH--------hc------
Confidence            4554  6887  89999999999999999988 7888888887  78  999999999997542        00      


Q ss_pred             hhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCC
Q 013939          289 VMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKIT  368 (433)
Q Consensus       289 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~  368 (433)
                           + .++.   .         .                 .+                 .     ..|+.+++++.++
T Consensus       263 -----~-~~~~---~---------~-----------------~v-----------------~-----~im~~~~~~v~~~  285 (326)
T PRK10892        263 -----G-IDLR---Q---------A-----------------SI-----------------A-----DVMTPGGIRVRPG  285 (326)
T ss_pred             -----C-CCcc---c---------C-----------------CH-----------------H-----HhcCCCCEEECCC
Confidence                 0 0000   0         0                 00                 0     2367799999999


Q ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939          369 SSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVA  409 (433)
Q Consensus       369 ~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~  409 (433)
                      +++.+|+.+|.+++++++||+|+   ++++||||++||+++
T Consensus       286 ~~l~~a~~~m~~~~~~~lpVv~~---~~lvGiit~~dil~~  323 (326)
T PRK10892        286 ILAVDALNLMQSRHITSVLVADG---DHLLGVLHMHDLLRA  323 (326)
T ss_pred             CCHHHHHHHHHHCCCcEEEEeeC---CEEEEEEEhHHhHhc
Confidence            99999999999999999999986   799999999999975

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=1.4e-12  Score=110.92  Aligned_cols=97  Identities=13%  Similarity=0.270  Sum_probs=76.5

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      ++++++++++++.+|++.|.++++.++||+|.+             ++++|+++..|++.++.... ..    ....++.
T Consensus         1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-------------~~~~Giv~~~dl~~~~~~~~-~~----~~~~~~~   62 (120)
T cd04641           1 KNIATARPDTPLIDVLDMLVERRVSALPIVDEN-------------GKVVDVYSRFDVINLAKEGA-YN----NLDLTVG   62 (120)
T ss_pred             CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-------------CeEEEEEeHHHHHHHHhcCc-cc----cccCCHH
Confidence            367899999999999999999999999999863             79999999999998764321 10    0011222


Q ss_pred             ------hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           98 ------QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        98 ------~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                            .+|.   .++.++.+++++.++++.|. ++++++||+++
T Consensus        63 ~~~~~~~~~~---~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  104 (120)
T cd04641          63 EALERRSQDF---EGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE  104 (120)
T ss_pred             HHHhhcccCC---CCCeEEcCCCcHHHHHHHHHhcCccEEEEECC
Confidence                  2333   24889999999999999999 78999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.40  E-value=5.3e-13  Score=139.88  Aligned_cols=120  Identities=20%  Similarity=0.241  Sum_probs=101.2

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV  296 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~  296 (433)
                      +++.+.+++++.+++.+|+++|.+ +++++.++++  ++  ++.||||.+|+++...       +           +   
T Consensus       154 ~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~--~~--~~~GIvT~~dl~~~v~-------~-----------~---  208 (610)
T COG2905         154 VKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD--SG--PLLGIVTRKDLRSRVI-------A-----------D---  208 (610)
T ss_pred             HhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC--CC--CccceeehHHHHHHHH-------h-----------c---
Confidence            578899999999999999999999 9999999998  88  9999999999987641       0           0   


Q ss_pred             CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939          297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA  376 (433)
Q Consensus       297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~  376 (433)
                                       +...      -     ..+                 +     +.|+.|++++.+.+-+-+||-
T Consensus       209 -----------------g~~~------~-----~~V-----------------~-----evmT~p~~svd~~~~~feAml  238 (610)
T COG2905         209 -----------------GRSK------T-----QKV-----------------S-----EVMTSPVISVDRGDFLFEAML  238 (610)
T ss_pred             -----------------CCCc------c-----cch-----------------h-----hhhccCceeecCcchHHHHHH
Confidence                             0000      0     011                 1     458999999999999999999


Q ss_pred             HHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          377 QMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       377 ~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      .|..++||||||+++   |+++||||.+|||+.+...+.
T Consensus       239 ~m~r~~I~hl~V~e~---gq~~Gilt~~dIl~l~s~~~~  274 (610)
T COG2905         239 MMLRNRIKHLPVTED---GQPLGILTLTDILRLFSQNSI  274 (610)
T ss_pred             HHHHhCCceeeeecC---CeeeEEeeHHHHHHhhCCCce
Confidence            999999999999999   899999999999999986543

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.40  E-value=2e-12  Score=136.84  Aligned_cols=115  Identities=16%  Similarity=0.163  Sum_probs=99.7

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV  296 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~  296 (433)
                      +|.++++++.+++++.+|+++|.+ +++.+||+|+  ++  +++|+||.+|+......                      
T Consensus        94 iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~--~g--klvGIVT~rDL~~~~~~----------------------  147 (479)
T PRK07807         94 LVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDE--EG--RPVGVVTEADCAGVDRF----------------------  147 (479)
T ss_pred             ccccCCeEECCCCCHHHHHHHHHhcCCceEEEECC--CC--eEEEEEeHHHHhcCccC----------------------
Confidence            688899999999999999999999 8999999997  78  99999999998643200                      


Q ss_pred             CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939          297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA  376 (433)
Q Consensus       297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~  376 (433)
                                      .                 .+      .                ..|+.+++++.++++|.+++.
T Consensus       148 ----------------~-----------------~V------~----------------diMt~~~itV~~d~sL~eAl~  172 (479)
T PRK07807        148 ----------------T-----------------QV------R----------------DVMSTDLVTLPAGTDPREAFD  172 (479)
T ss_pred             ----------------C-----------------CH------H----------------HhccCCceEECCCCcHHHHHH
Confidence                            0                 00      0                225779999999999999999


Q ss_pred             HHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          377 QMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       377 ~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      +|.+++++++||||++  ++++||||..||++....+|.
T Consensus       173 lM~~~~i~~LPVVD~~--g~lvGIIT~~DIl~~~~~~~~  209 (479)
T PRK07807        173 LLEAARVKLAPVVDAD--GRLVGVLTRTGALRATIYTPA  209 (479)
T ss_pred             HHHhcCCCEEEEEcCC--CeEEEEEEHHHHHHHhhCCch
Confidence            9999999999999987  899999999999999988754

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=1.8e-12  Score=110.12  Aligned_cols=112  Identities=13%  Similarity=0.137  Sum_probs=87.6

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.+++++.+|++.|.. ++..+||+|+  +|  +++|++|..|+++....                   .      
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~--~~--~~~Givt~~dl~~~~~~-------------------~------   52 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE--DG--DLVGVVSRKDLLKASIG-------------------G------   52 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC--CC--CEEEEEEHHHHHHHHHc-------------------C------
Confidence            57899999999999999987 8999999997  78  99999999999764200                   0      


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCC--CCCeEecCCCCHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGR--STPLTCKITSSLAAVMAQM  378 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~it~~p~~sL~~v~~~m  378 (433)
                                  .....            ..+      +                ..|.  .++.+|++++++.+++.+|
T Consensus        53 ------------~~~~~------------~~~------~----------------~~~~~~~~~~~v~~~~~l~~~~~~~   86 (118)
T cd04617          53 ------------ADLQK------------VPV------G----------------VIMTRMPNITTTTPEESVLEAAKKL   86 (118)
T ss_pred             ------------CCccC------------CCH------H----------------HHhCCCCCcEEECCCCcHHHHHHHH
Confidence                        00000            000      0                1123  3688999999999999999


Q ss_pred             HHcCCCEEEEEeCCC-CCeEEEEEeHHHHHH
Q 013939          379 LSHRATHVWVTEDES-DDVLVGVVGYADILV  408 (433)
Q Consensus       379 ~~~~vhrl~VVD~~~-~~~lvGIVs~~DIL~  408 (433)
                      .+++++++||||+++ +++++|+||++||++
T Consensus        87 ~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          87 IEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             HHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            999999999999852 159999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=4.5e-12  Score=108.25  Aligned_cols=117  Identities=15%  Similarity=0.188  Sum_probs=88.1

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      ++.++.+++++.+|++.|.+ +++.+||+|+  + |  +++|+++..|+++.....    ....+..++..         
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~--~~~Giv~~~dl~~~~~~~----~~~~~~~~~~~---------   64 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG--EVIGILSQRRLVEFLWEN----ARSFPGLDPLY---------   64 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC--cEEEEEEHHHHHHHHHHh----HHhccchhhhh---------
Confidence            57889999999999999998 8999999997  6 8  999999999998642100    00000000000         


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML  379 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~  379 (433)
                                   +.                ....              .      ..+..++.++.+++++.+|+++|.
T Consensus        65 -------------~~----------------~~~~--------------~------~~~~~~~~~v~~~~~l~~a~~~m~   95 (123)
T cd04627          65 -------------PI----------------PLRD--------------L------TIGTSDVISINGDQPLIDALHLMH   95 (123)
T ss_pred             -------------hh----------------hhhh--------------c------ccCcCCceEeCCCCCHHHHHHHHH
Confidence                         00                0000              0      124678899999999999999999


Q ss_pred             HcCCCEEEEEeCCCCCeEEEEEeHHHH
Q 013939          380 SHRATHVWVTEDESDDVLVGVVGYADI  406 (433)
Q Consensus       380 ~~~vhrl~VVD~~~~~~lvGIVs~~DI  406 (433)
                      +++++++||+|++  ++++|+||..||
T Consensus        96 ~~~~~~lpVvd~~--~~~vGiit~~di  120 (123)
T cd04627          96 NEGISSVAVVDNQ--GNLIGNISVTDV  120 (123)
T ss_pred             HcCCceEEEECCC--CcEEEEEeHHHh
Confidence            9999999999997  899999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.39  E-value=6.4e-13  Score=114.86  Aligned_cols=113  Identities=13%  Similarity=0.148  Sum_probs=89.3

Q ss_pred             CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939          221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      ++++++.+++++.+|++.|.+ +++.+||+|+  +|  +++|+||.+|++......    ..               .+ 
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~--~~--~~~Gii~~~dl~~~~~~~----~~---------------~~-   57 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE--SG--KILGMVTLGNLLSSLSSG----KV---------------QP-   57 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC--CC--CEEEEEEHHHHHHHHHHh----cc---------------CC-
Confidence            357899999999999999998 8999999997  78  999999999997642000    00               00 


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHH-
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQM-  378 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m-  378 (433)
                                    .               ..+                 +     +.|..++.+|++++++.+++++| 
T Consensus        58 --------------~---------------~~v-----------------~-----~im~~~~~~v~~~~~~~~v~~~~~   86 (124)
T cd04608          58 --------------S---------------DPV-----------------S-----KALYKQFKRVNKNDTLGKLSRILE   86 (124)
T ss_pred             --------------C---------------CcH-----------------H-----HHhhccceecCCCCCHHHHHhhcc
Confidence                          0               000                 0     33688999999999999999965 


Q ss_pred             --------HHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHH
Q 013939          379 --------LSHRATHVWVTEDESDDVLVGVVGYADILVAV  410 (433)
Q Consensus       379 --------~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i  410 (433)
                              .+++.+++||+|++  |+++||||.+||++++
T Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~--~~~~Givt~~Dl~~~~  124 (124)
T cd04608          87 TDAFLLVFFEQISSAAIGKEKQ--EKPIGIVTKIDLLSYI  124 (124)
T ss_pred             cCCceEEEeccccccccccccc--cceEEEEehhHhhhhC
Confidence                    34478999999987  8999999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=2.5e-12  Score=108.22  Aligned_cols=111  Identities=15%  Similarity=0.165  Sum_probs=88.0

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      +++++.+++++.+|++.|.+ +.+.+||+|+  + |  +++|+++.+|+++....       .            ...+ 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~--~~~G~v~~~dl~~~~~~-------~------------~~~~-   57 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR--RES--DAYGIVTMRDILKKVVA-------E------------GRDP-   57 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CCC--cEEEEEehHHHHHHHHh-------C------------CCCC-
Confidence            57899999999999999988 8899999997  6 7  99999999999763200       0            0000 


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML  379 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~  379 (433)
                                   ..               ..+      +                ..+..++.+|.+++++.+++.+|.
T Consensus        58 -------------~~---------------~~v------~----------------~~~~~~~~~v~~~~~l~~~~~~~~   87 (114)
T cd04630          58 -------------DR---------------VNV------Y----------------EIMTKPLISVSPDMDIKYCARLME   87 (114)
T ss_pred             -------------Cc---------------cCH------H----------------HHhcCCCeeECCCCCHHHHHHHHH
Confidence                         00               000      0                124568899999999999999999


Q ss_pred             HcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939          380 SHRATHVWVTEDESDDVLVGVVGYADILVA  409 (433)
Q Consensus       380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~  409 (433)
                      +++.+++||+|+   |+++|+||+.||+++
T Consensus        88 ~~~~~~~~Vvd~---~~~~Gvi~~~dl~~~  114 (114)
T cd04630          88 RTNIRRAPVVEN---NELIGIISLTDIFLA  114 (114)
T ss_pred             HcCCCEeeEeeC---CEEEEEEEHHHhhcC
Confidence            999999999997   799999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.37  E-value=3.6e-12  Score=108.30  Aligned_cols=122  Identities=16%  Similarity=0.236  Sum_probs=91.8

Q ss_pred             CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939          221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      ++++++.++.++.++++.|.+ ++..+||+++  +|  +++|+++.+||+.+.........     .++..+        
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~--~~~Giv~~~~l~~~~~~~~~~~~-----~~~~~~--------   64 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG--DR--RLVGIVTQRDLLRHARPDGRRPL-----RGRLRG--------   64 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC--CC--CEEEEEEHHHHHhhhcccccchh-----hhhhhc--------
Confidence            568899999999999999998 8899999997  78  99999999999765311000000     000000        


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML  379 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~  379 (433)
                                    ....            ..+                 +     ..+..+++++.+++++.+++++|.
T Consensus        65 --------------~~~~------------~~i-----------------~-----~~~~~~~~~~~~~~~l~~~~~~~~   96 (124)
T cd04600          65 --------------RDKP------------ETV-----------------G-----DIMSPPVVTVRPDTPIAELVPLLA   96 (124)
T ss_pred             --------------cccc------------ccH-----------------H-----HhccCCCeeeCCCCcHHHHHHHHH
Confidence                          0000            000                 0     224678999999999999999999


Q ss_pred             HcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939          380 SHRATHVWVTEDESDDVLVGVVGYADILVA  409 (433)
Q Consensus       380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~  409 (433)
                      +++.+++||+|++  |+++|+||..|++++
T Consensus        97 ~~~~~~~~Vv~~~--g~~~Gvit~~di~~~  124 (124)
T cd04600          97 DGGHHHVPVVDED--RRLVGIVTQTDLIAA  124 (124)
T ss_pred             hcCCCceeEEcCC--CCEEEEEEhHHhhcC
Confidence            9999999999987  999999999999864

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.37  E-value=3.7e-12  Score=107.00  Aligned_cols=110  Identities=19%  Similarity=0.217  Sum_probs=85.5

Q ss_pred             CeEEEcCCCcHHHHHHhccc-C-CCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-D-PSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~-isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      ++.++.+++++.+|++.|.+ + .+.+||+|+  +|  +++|+++.+|++.....    .....++.             
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~--~~--~~~G~v~~~dl~~~~~~----~~~~~~v~-------------   60 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN--EG--RYVGIISLADLRAIPTS----QWAQTTVI-------------   60 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcC--CC--cEEEEEEHHHHHHHHHh----hccccchh-------------
Confidence            57899999999999999976 5 788999997  78  99999999999764300    00000000             


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML  379 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~  379 (433)
                                                     .+                       +....++.++.+++++.++++.|.
T Consensus        61 -------------------------------~~-----------------------~~~~~~~~~v~~~~~l~~a~~~~~   86 (114)
T cd04801          61 -------------------------------QV-----------------------MTPAAKLVTVLSEESLAEVLKLLE   86 (114)
T ss_pred             -------------------------------hh-----------------------hcccccceEECCCCcHHHHHHHHH
Confidence                                           00                       001124679999999999999999


Q ss_pred             HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          380 SHRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      +++.+++||+|++  |+++||||..||++
T Consensus        87 ~~~~~~l~Vv~~~--~~~~Gvl~~~di~~  113 (114)
T cd04801          87 EQGLDELAVVEDS--GQVIGLITEADLLR  113 (114)
T ss_pred             HCCCCeeEEEcCC--CcEEEEEeccceec
Confidence            9999999999987  89999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.36  E-value=5e-12  Score=106.32  Aligned_cols=113  Identities=16%  Similarity=0.200  Sum_probs=89.6

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      ++.++.+++++.+|++.|.+ +.+.++|+|+  +|  +++|+++.+||++.....                         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~--~~~G~v~~~dl~~~~~~~-------------------------   52 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDR--DG--GVVGIITLPDLLRALEAD-------------------------   52 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC--CC--CEEEEEEHHHHHHHHhcc-------------------------
Confidence            56789999999999999998 8999999998  78  999999999998643000                         


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                  .....            ..+.                      ..+..++.+|.+++++.+++++|.+
T Consensus        53 ------------~~~~~------------~~~~----------------------~~~~~~~~~v~~~~~l~~~l~~~~~   86 (115)
T cd04593          53 ------------EAGEP------------SAVD----------------------EVATPPLLTVHPDEPLAHALDRMAS   86 (115)
T ss_pred             ------------ccccc------------ccHH----------------------HhccCCceEECCCCCHHHHHHHHHH
Confidence                        00000            0000                      1146689999999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILVA  409 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~~  409 (433)
                      ++.+++||+|++.+|+++|+||.+||+++
T Consensus        87 ~~~~~~~Vvd~~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          87 RGLRQLPVVDRGNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             cCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence            99999999987423699999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.35  E-value=8.9e-12  Score=125.46  Aligned_cols=107  Identities=20%  Similarity=0.294  Sum_probs=88.7

Q ss_pred             cchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCc
Q 013939            6 IYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCL   85 (433)
Q Consensus         6 ~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l   85 (433)
                      ...+|+|+|...++++++++++|+.+|++.|.++++..+||+|.+             ++++|+||..|+.+.+..+...
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~-------------g~lvGivt~~Dl~~~~~~~~~~  266 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN-------------MKIEGIFTDGDLRRVFDMGIDL  266 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC-------------CcEEEEEecHHHHHHHhcCCCc
Confidence            345689999633488999999999999999999999888888753             7999999999998754332111


Q ss_pred             chHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeee
Q 013939           86 EDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPK  134 (433)
Q Consensus        86 ~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~  134 (433)
                            .+.+|+++|.++   ++++.+++++.+|++.|. ++++++||.+
T Consensus       267 ------~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVv~  307 (326)
T PRK10892        267 ------RQASIADVMTPG---GIRVRPGILAVDALNLMQSRHITSVLVAD  307 (326)
T ss_pred             ------ccCCHHHhcCCC---CEEECCCCCHHHHHHHHHHCCCcEEEEee
Confidence                  136899999865   899999999999999999 8999999975

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.35  E-value=3.8e-12  Score=114.58  Aligned_cols=134  Identities=17%  Similarity=0.193  Sum_probs=97.9

Q ss_pred             HHHHHHHHHccCCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhh
Q 013939          192 EDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWK  270 (433)
Q Consensus       192 ~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~  270 (433)
                      ..|+++|.++..  .   .-+..  .+|+++|+.+.|++++.+|+++|.+ ++|-+||+++   |  ++||-||++|+.+
T Consensus        51 k~Il~aL~e~e~--~---~ita~--~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~---~--k~VGsItE~~iv~  118 (187)
T COG3620          51 KRILEALEEAEK--T---RITAK--TIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE---D--KVVGSITENDIVR  118 (187)
T ss_pred             HHHHHHHHHhhc--c---eEeHh--hhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC---C--eeeeeecHHHHHH
Confidence            667777766544  1   11122  3799999999999999999999999 9999999995   7  9999999999987


Q ss_pred             cchhHHHHHHhhccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCC
Q 013939          271 CDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFG  350 (433)
Q Consensus       271 ~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (433)
                      ...++.                      +++..                            .                  
T Consensus       119 ~~le~~----------------------e~i~~----------------------------~------------------  130 (187)
T COG3620         119 ALLEGM----------------------ESIRS----------------------------L------------------  130 (187)
T ss_pred             HHhccc----------------------cchhh----------------------------h------------------
Confidence            641100                      00000                            0                  


Q ss_pred             CCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          351 TGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       351 ~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                        +--+.|..+.-+++|+++|..+-.++-.|.  -+-|+++   |+++||||..||++.++.
T Consensus       131 --~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e~---G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         131 --RVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVVEN---GKVVGIITKADIMKLLAG  185 (187)
T ss_pred             --hHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEEeC---CceEEEEeHHHHHHHHhc
Confidence              000235666679999999987776665554  4677766   899999999999998764

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.35  E-value=9.1e-12  Score=104.75  Aligned_cols=93  Identities=15%  Similarity=0.174  Sum_probs=78.3

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      +++++++++++.+|++.|.+++.+.+||+|.+             ++++|+++..|+.+....        ...+.+|.+
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-------------~~~~G~v~~~dl~~~~~~--------~~~~~~v~~   60 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEE-------------NKVLGQVTLSDLLEIGPN--------DYETLKVCE   60 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CCEEEEEEHHHHHhhccc--------cccccChhh
Confidence            35889999999999999999999999999863             799999999999874211        112367999


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      +|...   +.++.+++++.+|++.|. ++.+++||+++
T Consensus        61 ~~~~~---~~~v~~~~~l~~al~~m~~~~~~~lpVvd~   95 (111)
T cd04603          61 VYIVP---VPIVYCDSKVTDLLRIFRETEPPVVAVVDK   95 (111)
T ss_pred             eeecC---CcEECCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence            99754   889999999999999999 78999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.35  E-value=4.6e-12  Score=109.48  Aligned_cols=85  Identities=18%  Similarity=0.251  Sum_probs=72.6

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      ++++++++++++.+|++.|.++++.++||+|.+             ++++|+++..|++..+....      ...+.+|+
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-------------~~~~Gii~~~dl~~~~~~~~------~~~~~~v~   62 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES-------------GKILGMVTLGNLLSSLSSGK------VQPSDPVS   62 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-------------CCEEEEEEHHHHHHHHHHhc------cCCCCcHH
Confidence            467899999999999999999999999999863             78999999999998765421      11357999


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK  124 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~  124 (433)
                      ++|.++   ++++.+++++.++.++|.
T Consensus        63 ~im~~~---~~~v~~~~~~~~v~~~~~   86 (124)
T cd04608          63 KALYKQ---FKRVNKNDTLGKLSRILE   86 (124)
T ss_pred             HHhhcc---ceecCCCCCHHHHHhhcc
Confidence            999865   999999999999999764

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=7.8e-12  Score=106.74  Aligned_cols=116  Identities=22%  Similarity=0.332  Sum_probs=90.1

Q ss_pred             ccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCCCCCCCcCCCCC
Q 013939          106 LLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRD  184 (433)
Q Consensus       106 ~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (433)
                      ++.++.+++++.+|++.|. +++++++|.++..                                             ++
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~---------------------------------------------~~   36 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEES---------------------------------------------GE   36 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCC---------------------------------------------Cc
Confidence            5888999999999999999 6789999976530                                             24


Q ss_pred             eEEEeeHHHHHHHHHHccCCC---CCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEE
Q 013939          185 KFCCLSREDVIRFLIGCLGAL---APLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKII  260 (433)
Q Consensus       185 ~~~iiTq~Dvi~~l~~~~~~l---~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klv  260 (433)
                      ..|+||+.|+++++.++....   .......+....+|..++.++.+++++.+|++.|.+ +...+||||+  +|  +++
T Consensus        37 ~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~--~~v  112 (123)
T cd04627          37 VIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDN--QG--NLI  112 (123)
T ss_pred             EEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC--CC--cEE
Confidence            579999999999875432211   110001122223678889999999999999999999 8999999998  78  999


Q ss_pred             eecchhhhhh
Q 013939          261 GEISASKLWK  270 (433)
Q Consensus       261 GiIS~~DL~~  270 (433)
                      |+||.+|++.
T Consensus       113 Giit~~di~~  122 (123)
T cd04627         113 GNISVTDVRL  122 (123)
T ss_pred             EEEeHHHhhc
Confidence            9999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=9e-12  Score=106.92  Aligned_cols=125  Identities=14%  Similarity=0.164  Sum_probs=89.1

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.+++++.+|+++|.+ +.+.+||+|+  +|  +++|+||.+||..+...........            ..++. 
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~--~~--~~~G~it~~dl~~~~~~~~~~~~~~------------~~~~~-   64 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDD--NG--KLTGIVTRHDIVDFVVRDRDKARTG------------DRSGE-   64 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECC--CC--cEEEEEEHHHHHHHHhhhhhhcchh------------hhhhh-
Confidence            56789999999999999999 8999999998  78  9999999999975421100000000            00000 


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                  ..           .+....+                      ...+..++++|.+++++.+++..|.+
T Consensus        65 ------------~~-----------~~~~~~~----------------------~~~~~~~~~~v~~~~~l~~~l~~~~~   99 (128)
T cd04632          65 ------------KE-----------RMLDLPV----------------------YDAMSSPVITASPNDSVRDAVDRMLE   99 (128)
T ss_pred             ------------hh-----------hhccCcH----------------------HHHhcCCCceECCCCcHHHHHHHHHh
Confidence                        00           0000000                      02256789999999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||++++.+++++|+||..||++
T Consensus       100 ~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632         100 NDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             CCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            9999999996412389999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.34  E-value=7.8e-12  Score=104.16  Aligned_cols=107  Identities=19%  Similarity=0.202  Sum_probs=87.7

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      +++++.++.++.+|+++|.+ +.+.+||+++  + |  +++|+++..||+.+...       .     +         . 
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~--~~~--~~~G~v~~~~l~~~~~~-------~-----~---------~-   55 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDG--DLD--NIIGVVHVKDLLRALAE-------G-----E---------E-   55 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECC--CCc--eEEEEEEHHHHHHHHHc-------C-----C---------C-
Confidence            57899999999999999988 8899999997  6 8  99999999999865300       0     0         0 


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML  379 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~  379 (433)
                                   .   .             .+                       ..+..++.++.+++++.++++.|.
T Consensus        56 -------------~---~-------------~~-----------------------~~~~~~~~~v~~~~~l~~~~~~~~   83 (111)
T cd04590          56 -------------D---L-------------DL-----------------------RDLLRPPLFVPESTPLDDLLEEMR   83 (111)
T ss_pred             -------------c---C-------------CH-----------------------HHHhcCCeecCCCCcHHHHHHHHH
Confidence                         0   0             00                       001246789999999999999999


Q ss_pred             HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          380 SHRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      +++.+++||+|++  |+++|+||+.|+++
T Consensus        84 ~~~~~~~~Vv~~~--~~~~Gvit~~di~~  110 (111)
T cd04590          84 KERSHMAIVVDEY--GGTAGLVTLEDILE  110 (111)
T ss_pred             hcCCcEEEEEECC--CCEEEEeEHHHhhc
Confidence            9999999999997  89999999999975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.34  E-value=1.1e-11  Score=103.27  Aligned_cols=104  Identities=16%  Similarity=0.224  Sum_probs=87.7

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      ++.++.+++++.+|++.|.+ +.+.+||+|+  +|  +++|+++..|++....        ..++.              
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~--~~--~~~G~v~~~~l~~~~~--------~~~v~--------------   56 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE--KN--KVVGIVTSKDVAGKDP--------DTTIE--------------   56 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECC--CC--eEEEEecHHHHhcccc--------cccHH--------------
Confidence            57899999999999999988 8889999997  78  9999999999975320        00000              


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                                                             ..+..++.+|.+++++.+++.+|.+
T Consensus        57 -------------------------------------------------------~~~~~~~~~v~~~~~l~~~~~~~~~   81 (108)
T cd04596          57 -------------------------------------------------------KVMTKNPITVNPKTSVASVAHMMIW   81 (108)
T ss_pred             -------------------------------------------------------HHhcCCCeEECCCCCHHHHHHHHHH
Confidence                                                                   1135578899999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||+|++  |+++|+||+.||++
T Consensus        82 ~~~~~~~Vv~~~--~~~~G~it~~di~~  107 (108)
T cd04596          82 EGIEMLPVVDDN--KKLLGIISRQDVLK  107 (108)
T ss_pred             cCCCeeeEEcCC--CCEEEEEEHHHhhc
Confidence            999999999987  89999999999986

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.34  E-value=4.6e-12  Score=127.08  Aligned_cols=120  Identities=13%  Similarity=0.177  Sum_probs=97.4

Q ss_pred             CCCcccccCcCCC--eEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccch
Q 013939          210 LSSISSLGVINPN--YSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAG  286 (433)
Q Consensus       210 ~~tV~~L~im~~~--vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~  286 (433)
                      ..+|++  +|.++  ++++++++++.+|++.|.+ +.+.+||||+  +|  +++|+||.+|+++....            
T Consensus       196 ~~~V~~--im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~--~g--~~iG~vt~~dl~~~~~~------------  257 (321)
T PRK11543        196 LNKVHH--LMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA--QQ--QVQGVFTDGDLRRWLVG------------  257 (321)
T ss_pred             HhHHHH--HhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC--CC--cEEEEecHHHHHHHHhC------------
Confidence            345555  68887  9999999999999999988 7899999998  78  99999999999764200            


Q ss_pred             hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939          287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK  366 (433)
Q Consensus       287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~  366 (433)
                             + ..+.             .                 .+                 +     +.|..+++++.
T Consensus       258 -------~-~~~~-------------~-----------------~v-----------------~-----~im~~~~~~v~  277 (321)
T PRK11543        258 -------G-GALT-------------T-----------------PV-----------------N-----EAMTRGGTTLQ  277 (321)
T ss_pred             -------C-CCcC-------------C-----------------cH-----------------H-----HhcCCCCEEEC
Confidence                   0 0000             0                 00                 0     22577899999


Q ss_pred             CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939          367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVA  409 (433)
Q Consensus       367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~  409 (433)
                      +++++.+++++|.++++.++||||++  |+++|+||+.||+++
T Consensus       278 ~~~~l~~a~~~m~~~~~~~lpVvd~~--~~lvGvIt~~di~~~  318 (321)
T PRK11543        278 AQSRAIDAKEILMKRKITAAPVVDEN--GKLTGAINLQDFYQA  318 (321)
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEEcCC--CeEEEEEEHHHHHhc
Confidence            99999999999999999999999987  899999999999974

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=8.6e-12  Score=104.51  Aligned_cols=114  Identities=17%  Similarity=0.179  Sum_probs=86.7

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.+++++.+|++.|.+ +++.+||+|+  +|  +++|+++.+|++++........+.                  .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~--~~~Giv~~~dl~~~~~~~~~~~~~------------------~   59 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK--EG--KYVGTISLTDILWKLKGLENLDLE------------------R   59 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECC--CC--cEEEEEeHHHHHHHhhccCchhHH------------------H
Confidence            57899999999999999988 8999999997  78  999999999998753100000000                  0


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                      +.           .               ..+.                      ..+..++.++.+++++.+++..|.+
T Consensus        60 ~~-----------~---------------~~v~----------------------~~~~~~~~~v~~~~~l~~a~~~~~~   91 (116)
T cd04643          60 LV-----------D---------------LKVI----------------------DVMNTDVPVIIDDADIEEILHLLID   91 (116)
T ss_pred             Hh-----------C---------------CcHH----------------------HHhcCCCceecCCCCHHHHHHHHhc
Confidence            00           0               0000                      1246678999999999999999988


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILVA  409 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~~  409 (433)
                      ++  .+||+|++  |+++||||..||+++
T Consensus        92 ~~--~~~Vv~~~--~~~~Gvit~~dil~~  116 (116)
T cd04643          92 QP--FLPVVDDD--GIFIGIITRREILKA  116 (116)
T ss_pred             CC--ceeEEeCC--CeEEEEEEHHHhhcC
Confidence            65  59999987  899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.33  E-value=4.8e-12  Score=132.81  Aligned_cols=128  Identities=20%  Similarity=0.297  Sum_probs=108.6

Q ss_pred             ccccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcC
Q 013939            3 SVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKS   82 (433)
Q Consensus         3 ~~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~   82 (433)
                      ..|.-+++++++.  .+.++|++.+++.+|...|.++|++++-+++..             +...||||..|+...+..+
T Consensus       144 ~e~~~trv~~~~~--~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-------------~~~~GIvT~~dl~~~v~~~  208 (610)
T COG2905         144 SEFILTRVGEVKT--LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-------------GPLLGIVTRKDLRSRVIAD  208 (610)
T ss_pred             chHHHHHHHHHhc--CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-------------CCccceeehHHHHHHHHhc
Confidence            3466678888886  456999999999999999999999998888863             7899999999999987653


Q ss_pred             CCcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccC
Q 013939           83 DCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASN  161 (433)
Q Consensus        83 ~~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~  161 (433)
                      ..      -..+||+++|+.+   ++++++++-++||+-+|+ ++|||+||.+++                         
T Consensus       209 g~------~~~~~V~evmT~p---~~svd~~~~~feAml~m~r~~I~hl~V~e~g-------------------------  254 (610)
T COG2905         209 GR------SKTQKVSEVMTSP---VISVDRGDFLFEAMLMMLRNRIKHLPVTEDG-------------------------  254 (610)
T ss_pred             CC------CcccchhhhhccC---ceeecCcchHHHHHHHHHHhCCceeeeecCC-------------------------
Confidence            12      2248999999964   999999999999999999 899999997653                         


Q ss_pred             ccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHc
Q 013939          162 SSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGC  201 (433)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~  201 (433)
                                            +++||||.+||++.+..|
T Consensus       255 ----------------------q~~Gilt~~dIl~l~s~~  272 (610)
T COG2905         255 ----------------------QPLGILTLTDILRLFSQN  272 (610)
T ss_pred             ----------------------eeeEEeeHHHHHHhhCCC
Confidence                                  468999999999988543

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.33  E-value=1.6e-11  Score=101.48  Aligned_cols=103  Identities=16%  Similarity=0.231  Sum_probs=86.7

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.++.++.+|++.|.+ +...++|+|+  +|  +++|++|..|++... .       . ++.              
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~--~g--~~~Giv~~~dl~~~~-~-------~-~~~--------------   54 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA--DG--QPLGFVTRREAARAS-G-------G-CCG--------------   54 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECC--CC--CEEEEEeHHHHHHhc-c-------c-chh--------------
Confidence            57789999999999999988 8889999997  78  999999999997532 0       0 000              


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                                                             ..+...+.++.+++++.+++++|.+
T Consensus        55 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~   79 (106)
T cd04582          55 -------------------------------------------------------DHAEPFKVTVSVDDDLRIVLSRMFA   79 (106)
T ss_pred             -------------------------------------------------------hhcccCCEEECCCCCHHHHHHHHHH
Confidence                                                                   1134466789999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++++++||+|++  ++++|+||..|+++
T Consensus        80 ~~~~~~~Vv~~~--~~~~Gvi~~~~l~~  105 (106)
T cd04582          80 HDMSWLPCVDED--GRYVGEVTQRSIAD  105 (106)
T ss_pred             CCCCeeeEECCC--CcEEEEEEHHHhhc
Confidence            999999999987  89999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=1.1e-11  Score=105.31  Aligned_cols=123  Identities=20%  Similarity=0.231  Sum_probs=90.6

Q ss_pred             CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCC
Q 013939          221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTP  298 (433)
Q Consensus       221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~  298 (433)
                      ++++++.++.++.+|+++|.+ +...+||+|+  + |  +++|+|+..||..+.....  .+....              
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~--~~~G~v~~~dl~~~~~~~~--~~~~~~--------------   60 (125)
T cd04631           1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG--KLVGIITATDILKYLGGGE--KFNKIK--------------   60 (125)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC--EEEEEEEHHHHHHHhhccc--hhcccc--------------
Confidence            357889999999999999998 8889999997  6 8  9999999999986531100  000000              


Q ss_pred             CCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHH
Q 013939          299 RSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQM  378 (433)
Q Consensus       299 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m  378 (433)
                          .   .     .....      .    ...+                      ...+..++.+|.+++++.++++.|
T Consensus        61 ----~---~-----~~~~~------~----~~~~----------------------~~~~~~~~~~v~~~~~l~~~~~~~   96 (125)
T cd04631          61 ----T---G-----NGLEA------I----NEPV----------------------RSIMTRNVITITPDDSIKDAAELM   96 (125)
T ss_pred             ----c---c-----ccchh------h----hcCH----------------------HHHhcCCceEeCCCCcHHHHHHHH
Confidence                0   0     00000      0    0000                      022466899999999999999999


Q ss_pred             HHcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939          379 LSHRATHVWVTEDESDDVLVGVVGYADILVA  409 (433)
Q Consensus       379 ~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~  409 (433)
                      .+++.++++|+|++  |+++|+||..||+++
T Consensus        97 ~~~~~~~~~V~~~~--~~~~Gvit~~di~~~  125 (125)
T cd04631          97 LEKRVGGLPVVDDD--GKLVGIVTERDLLKA  125 (125)
T ss_pred             HHcCCceEEEEcCC--CcEEEEEEHHHhhcC
Confidence            99999999999987  899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=2e-11  Score=102.01  Aligned_cols=110  Identities=18%  Similarity=0.183  Sum_probs=88.3

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      ++.++.+++++.+|++.|.+ +.+.+||+|+  +|  +++|+++..|+++.....  ..+.                   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~--~~--~~~G~v~~~dl~~~~~~~--~~~~-------------------   56 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD--KK--RLVGIITRYDVLSYALES--EELK-------------------   56 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC--CC--CEEEEEEHHHHHHhhhhh--hhhc-------------------
Confidence            36788999999999999998 8899999997  78  999999999997642110  0000                   


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                        .         .                 .+      .                ..+..++.++.+++++.+++.+|.+
T Consensus        57 --~---------~-----------------~i------~----------------~~~~~~~~~v~~~~~l~~~~~~~~~   86 (113)
T cd04615          57 --D---------A-----------------KV------R----------------EVMNSPVITIDANDSIAKARWLMSN   86 (113)
T ss_pred             --C---------C-----------------cH------H----------------HhccCCceEECCCCcHHHHHHHHHH
Confidence              0         0                 00      0                1145688999999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||+|++  |+++|+||..||++
T Consensus        87 ~~~~~~~Vvd~~--g~~~Gvvt~~dl~~  112 (113)
T cd04615          87 NNISRLPVLDDK--GKVGGIVTEDDILR  112 (113)
T ss_pred             cCCCeeeEECCC--CeEEEEEEHHHhhc
Confidence            999999999987  89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=2.5e-11  Score=102.40  Aligned_cols=95  Identities=24%  Similarity=0.383  Sum_probs=80.6

Q ss_pred             eEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchhc
Q 013939           20 LAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQV   99 (433)
Q Consensus        20 lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~I   99 (433)
                      +.++++++++.+|++.|.+++...+||+|.+             ++++|+++..|+.+.+.....     ...+.++.++
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-------------g~~~G~vt~~dl~~~~~~~~~-----~~~~~~v~~~   64 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPH-------------GKLAGVLTKTDVVRQMGRCGG-----PGCTAPVENV   64 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCC-------------CCEEEEEehHHHHHHHhhcCC-----CcccCCHHHH
Confidence            6789999999999999999999999999864             789999999999986643100     1124789999


Q ss_pred             cccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939          100 IVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus       100 m~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      |..+   ++++.+++++.+|++.|. ++.+++||.++
T Consensus        65 ~~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~   98 (114)
T cd04619          65 MTRA---VVSCRPGDLLHDVWQVMKQRGLKNIPVVDE   98 (114)
T ss_pred             hcCC---CeeECCCCCHHHHHHHHHHcCCCeEEEECC
Confidence            9765   899999999999999999 78999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=2.7e-11  Score=102.81  Aligned_cols=98  Identities=18%  Similarity=0.194  Sum_probs=81.0

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      +++++++++++.+|++.|.++++..+||+|.+             ++++|+++..|+.+.+......      -..++++
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-------------~~~~Givt~~dl~~~~~~~~~~------~~~~~~~   62 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-------------GDLVGVVSRKDLLKASIGGADL------QKVPVGV   62 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-------------CCEEEEEEHHHHHHHHHcCCCc------cCCCHHH
Confidence            56899999999999999999999999999863             6899999999999876432111      1356888


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV  136 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~  136 (433)
                      +|... .+++++++++++.+|++.|. ++++++||++++
T Consensus        63 ~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~  100 (118)
T cd04617          63 IMTRM-PNITTTTPEESVLEAAKKLIEHQVDSLPVVEKV  100 (118)
T ss_pred             HhCCC-CCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCC
Confidence            98731 24889999999999999999 789999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=1.7e-11  Score=101.88  Aligned_cols=110  Identities=17%  Similarity=0.244  Sum_probs=87.8

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.++.++.++++.|.+ +++.+||+|+  ++  +++|+++..|+..+....                  .. .+  
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~--~~--~~~Giv~~~~l~~~~~~~------------------~~-~~--   56 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD--GG--RLVGIFSERDIVRKVALR------------------GA-SA--   56 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECC--CC--CEEEEEehHHHHHHHhhc------------------CC-Cc--
Confidence            57789999999999999988 8999999997  78  999999999997643000                  00 00  


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                  ..               ..+                 +     ..+..++.++.+++++.++++.|.+
T Consensus        57 ------------~~---------------~~~-----------------~-----~~~~~~~~~v~~~~~~~~~l~~~~~   87 (113)
T cd04623          57 ------------LD---------------TPV-----------------S-----EIMTRNVITVTPDDTVDEAMALMTE   87 (113)
T ss_pred             ------------cc---------------cCH-----------------H-----HhcCCCcEEECCCCcHHHHHHHHHH
Confidence                        00               000                 0     1245688999999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||+|+   |+++|+||..||++
T Consensus        88 ~~~~~~~Vv~~---~~~~Gvit~~di~~  112 (113)
T cd04623          88 RRFRHLPVVDG---GKLVGIVSIGDVVK  112 (113)
T ss_pred             cCCCEeEEEeC---CEEEEEEEHHHhhc
Confidence            99999999997   79999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=3e-11  Score=101.61  Aligned_cols=98  Identities=19%  Similarity=0.275  Sum_probs=81.3

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      ++++++++++++.+|++.|.+++++.+||+|..            .++++|+++..|+++++.....     .....++.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~------------~~~~~G~v~~~dl~~~~~~~~~-----~~~~~~v~   63 (114)
T cd04630           1 PNVVTIDGLATVAEALQLMKEHGVSSLVVEKRR------------ESDAYGIVTMRDILKKVVAEGR-----DPDRVNVY   63 (114)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCEEEEEECC------------CCcEEEEEehHHHHHHHHhCCC-----CCCccCHH
Confidence            467899999999999999999999999999852            1699999999999987654211     11236789


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      ++|..+   ++++.+++++.+|++.|. .+.+.+||.++
T Consensus        64 ~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~   99 (114)
T cd04630          64 EIMTKP---LISVSPDMDIKYCARLMERTNIRRAPVVEN   99 (114)
T ss_pred             HHhcCC---CeeECCCCCHHHHHHHHHHcCCCEeeEeeC
Confidence            999754   999999999999999999 68999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.30  E-value=1.8e-11  Score=129.53  Aligned_cols=114  Identities=14%  Similarity=0.134  Sum_probs=96.9

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV  296 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~  296 (433)
                      +|.++++++.+++++.+|+++|.+ +++.++|+|   ++  +++|+||.+||......                      
T Consensus        93 im~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD---~g--klvGIVT~rDL~~~~~~----------------------  145 (475)
T TIGR01303        93 LVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL---ED--RPVGLVTDSDLLGVDRF----------------------  145 (475)
T ss_pred             ccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE---CC--EEEEEEEHHHhhcCCCC----------------------
Confidence            577889999999999999999998 888888888   47  99999999998543200                      


Q ss_pred             CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939          297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA  376 (433)
Q Consensus       297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~  376 (433)
                                      .                 .+      +                ..|+.+++++.+++++.+++.
T Consensus       146 ----------------~-----------------~V------~----------------dIMt~~litv~~~~sL~eAl~  170 (475)
T TIGR01303       146 ----------------T-----------------QV------R----------------DIMSTDLVTAPADTEPRKAFD  170 (475)
T ss_pred             ----------------C-----------------CH------H----------------HHccCCceEeCCCCcHHHHHH
Confidence                            0                 00      0                225779999999999999999


Q ss_pred             HHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          377 QMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       377 ~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      +|.+++++++||||++  |+++|+||.+||++....+|.
T Consensus       171 lM~~~~i~~LPVVD~~--g~LvGIIT~~DLl~~~~~~~~  207 (475)
T TIGR01303       171 LLEHAPRDVAPLVDAD--GTLAGILTRTGALRATIYTPA  207 (475)
T ss_pred             HHHHcCCCEEEEEcCC--CeEEEEEEHHHHHHHHhCCch
Confidence            9999999999999987  899999999999999988765

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.30  E-value=3.5e-11  Score=100.06  Aligned_cols=107  Identities=14%  Similarity=0.184  Sum_probs=88.6

Q ss_pred             CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939          221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      ++++++.++.++.+|++.|.+ +.+.+||+|+  +|  +++|+++..|++.....                         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~--~~~G~v~~~~l~~~~~~-------------------------   52 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE--DG--RLVGIVTSWDISKAVAR-------------------------   52 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECC--CC--cEEEEEeHHHHHHHHhh-------------------------
Confidence            567899999999999999988 8899999998  78  99999999999754200                         


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML  379 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~  379 (433)
                                   .. .              .+      .                ..+..++.+|.+++++.+++..|.
T Consensus        53 -------------~~-~--------------~~------~----------------~~~~~~~~~v~~~~~l~~~~~~~~   82 (110)
T cd04605          53 -------------DK-K--------------SV------E----------------DIMTRNVITATPDEPIDVAARKME   82 (110)
T ss_pred             -------------Cc-c--------------CH------H----------------HhcCCCCeEECCCCcHHHHHHHHH
Confidence                         00 0              00      0                113557889999999999999999


Q ss_pred             HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          380 SHRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      +++.+++||+|++  |+++|+||+.||++
T Consensus        83 ~~~~~~~~Vv~~~--~~~~G~v~~~di~~  109 (110)
T cd04605          83 RHNISALPVVDAE--NRVIGIITSEDISK  109 (110)
T ss_pred             HhCCCEEeEECCC--CcEEEEEEHHHhhh
Confidence            9999999999987  89999999999975

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.30  E-value=2.2e-11  Score=102.04  Aligned_cols=111  Identities=18%  Similarity=0.290  Sum_probs=90.7

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV  296 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~  296 (433)
                      ++.+.++++.++.++.+|+..|.+ +++++||++.   +  +++|+||.+|+++....                      
T Consensus         4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~---~--~l~Giit~~di~~~~~~----------------------   56 (117)
T COG0517           4 IMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD---G--KLVGIITERDILRALAA----------------------   56 (117)
T ss_pred             cccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC---C--EEEEEEEHHHHHHHHhc----------------------
Confidence            344789999999999999999999 9999999995   5  89999999999875310                      


Q ss_pred             CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939          297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA  376 (433)
Q Consensus       297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~  376 (433)
                                      .....            ..+                 +     ..|+.+++++.+++++.+++.
T Consensus        57 ----------------~~~~~------------~~v-----------------~-----~v~~~~~~~~~~~~~~~~~~~   86 (117)
T COG0517          57 ----------------GGKRL------------LPV-----------------K-----EVMTKPVVTVDPDTPLEEALE   86 (117)
T ss_pred             ----------------cCCcc------------ccH-----------------H-----HhccCCcEEECCCCCHHHHHH
Confidence                            00000            000                 0     225669999999999999999


Q ss_pred             HHHH-cCCCEEEEEeCCCCC-eEEEEEeHHHHH
Q 013939          377 QMLS-HRATHVWVTEDESDD-VLVGVVGYADIL  407 (433)
Q Consensus       377 ~m~~-~~vhrl~VVD~~~~~-~lvGIVs~~DIL  407 (433)
                      .|.+ ++++++||+|++  + +++||||.+||+
T Consensus        87 ~m~~~~~~~~lpVv~~~--~~~lvGivt~~di~  117 (117)
T COG0517          87 LMVERHKIRRLPVVDDD--GGKLVGIITLSDIL  117 (117)
T ss_pred             HHHHHcCcCeEEEEECC--CCeEEEEEEHHHcC
Confidence            9999 799999999997  7 999999999984

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.30  E-value=7.7e-11  Score=126.84  Aligned_cols=191  Identities=18%  Similarity=0.166  Sum_probs=130.5

Q ss_pred             CCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccccccccc
Q 013939           93 KTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANA  171 (433)
Q Consensus        93 ~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~  171 (433)
                      ..+|+++|.+.   ++++++++++.+|+++|. ++++++||+++++                                  
T Consensus        67 ~~~V~dim~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g----------------------------------  109 (546)
T PRK14869         67 KPQVRDLEIDK---PVTVSPDTSLKEAWNLMDENNVKTLPVVDEEG----------------------------------  109 (546)
T ss_pred             CCcHHHhcCCC---CcEECCCCcHHHHHHHHHHcCCCEEEEEcCCC----------------------------------
Confidence            36899999865   999999999999999999 7899999986532                                  


Q ss_pred             CCCCCCCcCCCCCeEEEeeHHHHHHHHHHccC--CCCCC---------------------CCCCccc-----------cc
Q 013939          172 NRPSSSSTTSVRDKFCCLSREDVIRFLIGCLG--ALAPL---------------------PLSSISS-----------LG  217 (433)
Q Consensus       172 ~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~--~l~~l---------------------~~~tV~~-----------L~  217 (433)
                                  +..|+||..|+.+++.+...  .+..+                     ..+....           ++
T Consensus       110 ------------~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~  177 (546)
T PRK14869        110 ------------KLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLE  177 (546)
T ss_pred             ------------EEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHH
Confidence                        45899999999997754221  01110                     0000111           11


Q ss_pred             CcCC-CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCC----------CCcceEEeecchhhhhhcchhHHHHHHhhccc
Q 013939          218 VINP-NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTS----------EDQYKIIGEISASKLWKCDYLAAAWALANLSA  285 (433)
Q Consensus       218 im~~-~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~----------~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~  285 (433)
                      .+.+ +++++.....+..   .+.+ +++++.|.....          +.  .+.++.|+.|.....     ..+.    
T Consensus       178 ~~~~~~lvi~gdr~d~~~---~ai~~~~~~lIlt~g~~~~~~v~~la~~~--~i~ii~t~~dt~~t~-----~~l~----  243 (546)
T PRK14869        178 RIEEGDIVIVGDREDIQL---AAIEAGVRLLIITGGAPVSEDVLELAKEN--GVTVISTPYDTFTTA-----RLIN----  243 (546)
T ss_pred             hccCCCEEEEcCcHHHHH---HHHHcCCCEEEECCCCCCCHHHHHHHHhC--CCeEEEecccHHHHH-----HHhh----
Confidence            2333 3555554444443   3445 788888876510          11  467777777765432     0000    


Q ss_pred             hhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCC-CCCeE
Q 013939          286 GQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGR-STPLT  364 (433)
Q Consensus       286 ~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~it  364 (433)
                                                 +.               ..+                 +     +.|+ .++++
T Consensus       244 ---------------------------~~---------------~~V-----------------~-----~iM~~~~~~~  259 (546)
T PRK14869        244 ---------------------------QS---------------IPV-----------------S-----YIMTTEDLVT  259 (546)
T ss_pred             ---------------------------cC---------------CCH-----------------H-----HhccCCCcEE
Confidence                                       00               000                 0     2356 78999


Q ss_pred             ecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          365 CKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       365 ~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      +++++++.++..+|.+++++++||||++  |+++|+||+.|+++...+
T Consensus       260 ~~~~~~~~~~~~~m~~~~~~~~PVvd~~--g~lvGiit~~dl~~~~~~  305 (546)
T PRK14869        260 FSKDDYLEDVKEVMLKSRYRSYPVVDED--GKVVGVISRYHLLSPVRK  305 (546)
T ss_pred             ECCCCcHHHHHHHHHhcCCCceEEEcCC--CCEEEEEEHHHhhccccC
Confidence            9999999999999999999999999987  999999999999996654

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=1.6e-11  Score=107.78  Aligned_cols=132  Identities=14%  Similarity=0.125  Sum_probs=90.1

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.+++++.+|++.|.+ +++++||+|+  +|  +++|++|..||+++......   ..++-..|.           
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~--~~--~~~Giv~~~dl~~~~~~~~~---~~~~~~~~~-----------   63 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD--NG--KPVGVITYRDLAFAEFEDNE---RGLPKKSIK-----------   63 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECC--CC--CEEEEEeHHHHHHHhhcccc---cccchhhhh-----------
Confidence            47889999999999999998 8999999997  78  99999999999875310000   000000000           


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                      |.+  ..  .....        +..+.....+                 .     ..+..++.++.+++++.+++..|.+
T Consensus        64 ~~~--~~--~~~~~--------~~~~~~~~~v-----------------~-----~~~~~~~~~v~~~~~l~~~~~~~~~  109 (135)
T cd04621          64 MKR--KA--GQKRY--------RYVKEVPLVA-----------------E-----DIMTEEIITVSPNDDVVDAAKLMLE  109 (135)
T ss_pred             hhh--hc--ccccc--------cccccccccH-----------------H-----HhcCCCCeEECCCCCHHHHHHHHHH
Confidence            000  00  00000        0000000000                 0     2356788899999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||+|+   |+++|+||.+||++
T Consensus       110 ~~~~~l~Vv~~---~~~~Gvit~~di~~  134 (135)
T cd04621         110 ANISGLPVVDN---DNIVGVITKTDICR  134 (135)
T ss_pred             cCCCEEEEEeC---CEEEEEEEHHHHhh
Confidence            99999999997   79999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=1.7e-11  Score=102.37  Aligned_cols=112  Identities=20%  Similarity=0.193  Sum_probs=87.8

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.++.++.+|++.|.+ +.+.+||+++  +|  +++|+++..|+.+.....           .+..          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~--~~~G~v~~~~l~~~~~~~-----------~~~~----------   56 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD--NG--NLVGFLSEQDCLKQLLES-----------SYHC----------   56 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECC--CC--eEEEEeehHHHHHHhhhh-----------hhcc----------
Confidence            57789999999999999988 7889999998  78  999999999997642100           0000          


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                  ..  .            ..+      .                ..+..++.++.+++++.+++.+|.+
T Consensus        57 ------------~~--~------------~~v------~----------------~~~~~~~~~v~~~~~l~~~~~~~~~   88 (114)
T cd04629          57 ------------DG--V------------ATV------R----------------DIMTTEVLTVSPDDSIVDLAQLMLK   88 (114)
T ss_pred             ------------CC--C------------ccH------H----------------HHhccCceEECCCCcHHHHHHHHHH
Confidence                        00  0            000      0                1145578899999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILVA  409 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~~  409 (433)
                      ++.+++||+|+   |+++|+||..||+++
T Consensus        89 ~~~~~~~Vv~~---~~~~Gvit~~di~~~  114 (114)
T cd04629          89 AKPKRYPVVDD---GKLVGQISRRDVLRA  114 (114)
T ss_pred             hCCCccCEEEC---CEEEEEEEHHHHhcC
Confidence            99999999997   799999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.29  E-value=2e-11  Score=102.28  Aligned_cols=108  Identities=16%  Similarity=0.276  Sum_probs=86.7

Q ss_pred             eEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCC
Q 013939          223 YSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSF  301 (433)
Q Consensus       223 vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~  301 (433)
                      .+++.+++++.+|++.|.+ +...++|+|+  +|  +++|+++.+|+.+....       .            . .+   
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~--~~~G~v~~~dl~~~~~~-------~------------~-~~---   56 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDE--NG--RLLGTVTDGDIRRALLK-------G------------L-SL---   56 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECC--CC--CEEEEEEcHHHHHHHhc-------C------------C-Cc---
Confidence            5688999999999999988 8889999997  78  99999999998753200       0            0 00   


Q ss_pred             CCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHc
Q 013939          302 PDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSH  381 (433)
Q Consensus       302 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~  381 (433)
                                  .  .             .+      .                ..+..++.++.+++++.+++++|.++
T Consensus        57 ------------~--~-------------~v------~----------------~~~~~~~~~v~~~~~l~~~~~~~~~~   87 (113)
T cd04607          57 ------------D--D-------------PV------S----------------EVMNRNPITAKVGSSREEILALMRER   87 (113)
T ss_pred             ------------C--C-------------CH------H----------------HhhcCCCEEEcCCCCHHHHHHHHHHC
Confidence                        0  0             00      0                11456788999999999999999999


Q ss_pred             CCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          382 RATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       382 ~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      +.+++||||++  |+++|+||.+||+.
T Consensus        88 ~~~~~~Vv~~~--~~~~Gvit~~di~~  112 (113)
T cd04607          88 SIRHLPILDEE--GRVVGLATLDDLLS  112 (113)
T ss_pred             CCCEEEEECCC--CCEEEEEEhHHhcc
Confidence            99999999987  89999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=1.8e-11  Score=103.61  Aligned_cols=119  Identities=13%  Similarity=0.177  Sum_probs=89.7

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.+++++.+|+++|.+ +++.+||+++  +|  +++|++|.+|++.+...       .     +....  .+.+. 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~--~~~G~v~~~~l~~~~~~-------~-----~~~~~--~~~~~-   62 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE--DG--KLVGLLTQRDLLRAALS-------S-----LSDNG--EESLT-   62 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECC--CC--CEEEEEEHHHHHHHhcc-------c-----ccccc--ccccc-
Confidence            57889999999999999998 8999999997  78  99999999999865300       0     00000  00000 


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                  ..             ....+  .                    ..+..++++|.+++++.+++..|.+
T Consensus        63 ------------~~-------------~~~~v--~--------------------~~~~~~~~~v~~~~~~~~~~~~~~~   95 (122)
T cd04803          63 ------------KE-------------RDVPV--A--------------------EVMKTDVLTVTPDTPLREAAEIMVE   95 (122)
T ss_pred             ------------cc-------------cCcCH--H--------------------HhhCCCCeEeCCCCcHHHHHHHHHH
Confidence                        00             00000  0                    1246688999999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||+|++  |+++|+||..||++
T Consensus        96 ~~~~~~~Vv~~~--~~~~Gvit~~dl~~  121 (122)
T cd04803          96 NKIGCLPVVDDK--GTLVGIITRSDFLR  121 (122)
T ss_pred             cCCCeEEEEcCC--CCEEEEEEHHHhhc
Confidence            999999999997  89999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.29  E-value=2e-11  Score=106.05  Aligned_cols=127  Identities=24%  Similarity=0.277  Sum_probs=90.5

Q ss_pred             CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHH---HHHHhhc--cchhh-hhccc
Q 013939          221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAA---AWALANL--SAGQF-VMGVE  293 (433)
Q Consensus       221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~---~~~~~~l--~~~~f-~~~~~  293 (433)
                      ++++++.+++++.+|++.|.+ ++..+||+|+  +|  +++|+|+..|+........   ...+..+  ....+ ..+. 
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~--~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   76 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD--DG--RLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFV-   76 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC--CC--CEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHH-
Confidence            568899999999999999998 8899999997  78  9999999999986431100   0000000  00000 0000 


Q ss_pred             cCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHH
Q 013939          294 DNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAA  373 (433)
Q Consensus       294 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~  373 (433)
                                       ....               ..+      .                ..+..+++++.+++++.+
T Consensus        77 -----------------~~~~---------------~~v------~----------------~~~~~~~~~v~~~~~~~~  102 (135)
T cd04586          77 -----------------RSHG---------------RKV------A----------------DVMTRPVVTVGEDTPLAE  102 (135)
T ss_pred             -----------------HhcC---------------CCH------H----------------HHhCCCceEeCCCCcHHH
Confidence                             0000               000      0                124667899999999999


Q ss_pred             HHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939          374 VMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVA  409 (433)
Q Consensus       374 v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~  409 (433)
                      ++..|.+++.+++||+| +  |+++||||+.||+++
T Consensus       103 ~~~~~~~~~~~~l~Vvd-~--g~~~Gvit~~di~~~  135 (135)
T cd04586         103 VAELMEEHRIKRVPVVR-G--GRLVGIVSRADLLRA  135 (135)
T ss_pred             HHHHHHHcCCCccCEec-C--CEEEEEEEhHhhhcC
Confidence            99999999999999999 6  899999999999863

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.28  E-value=2.6e-11  Score=129.31  Aligned_cols=117  Identities=12%  Similarity=0.031  Sum_probs=95.8

Q ss_pred             cCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCC-CCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939          219 INPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTS-EDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV  296 (433)
Q Consensus       219 m~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~-~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~  296 (433)
                      |.++++++.+++++.+|+++|.+ +++++||+|+.. +|  +++|+||.+|++...       ....++.          
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G--klvGIVT~~DL~~v~-------~~~~~V~----------  166 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS--KLLGYVTKRDWDFVN-------DRETKLS----------  166 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC--eEEEEEEHHHHhhcc-------ccCCcHH----------
Confidence            66889999999999999999998 999999998610 16  999999999996431       0000000          


Q ss_pred             CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCC--CeEecCCCCHHHH
Q 013939          297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRST--PLTCKITSSLAAV  374 (433)
Q Consensus       297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~it~~p~~sL~~v  374 (433)
                                                                                 +.|+.+  ++++.+++++.++
T Consensus       167 -----------------------------------------------------------eIMt~~~~lvtv~~~~sL~eA  187 (505)
T PLN02274        167 -----------------------------------------------------------EVMTSDDDLVTAPAGIDLEEA  187 (505)
T ss_pred             -----------------------------------------------------------HHhccCCCcEEECCCCCHHHH
Confidence                                                                       113433  8899999999999


Q ss_pred             HHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          375 MAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       375 ~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      +++|.+++++++||||++  ++++||||+.||++.+..+.+
T Consensus       188 l~~m~~~~~~~LPVVD~~--g~LvGvITr~DIlk~~~~p~~  226 (505)
T PLN02274        188 EAVLKDSKKGKLPLVNED--GELVDLVTRTDVKRVKGYPKL  226 (505)
T ss_pred             HHHHHHcCCCEEEEEcCC--CeEEEEEEHHHHHHHhhCcCc
Confidence            999999999999999987  899999999999999987544

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=2.2e-11  Score=103.08  Aligned_cols=120  Identities=17%  Similarity=0.206  Sum_probs=90.2

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.+++++.+|++.|.+ +.+.+||+|+  +|  +++|+++..|++.+...       ..    +..  +   ..  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~--~~~G~v~~~~l~~~~~~-------~~----~~~--~---~~--   59 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK--AG--ELIGIITRRDIIRAGSV-------RT----SVE--D---QQ--   59 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECC--CC--cEEEEEEcHHHHhhccc-------cc----ccc--c---hh--
Confidence            57899999999999999988 8999999997  78  99999999999864200       00    000  0   00  


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                               ..+.. ..            ..+                 .     ..+..++++|.+++++.+++..|.+
T Consensus        60 ---------~~~~~-~~------------~~~-----------------~-----~~~~~~~~~v~~~~~l~~~~~~~~~   95 (122)
T cd04635          60 ---------RTQTK-AS------------PTV-----------------E-----KIMSTPVYSVTPDDSIATAVELMLE   95 (122)
T ss_pred             ---------hhhhh-cc------------CcH-----------------H-----HHhcCCCeeECCCCCHHHHHHHHHH
Confidence                     00000 00            000                 0     2246688999999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILVA  409 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~~  409 (433)
                      ++.+++||+|++  |+++|+||..||+++
T Consensus        96 ~~~~~~~Vvd~~--g~~~Gvit~~dl~~~  122 (122)
T cd04635          96 HDIGRLPVVNEK--DQLVGIVDRHDVLKA  122 (122)
T ss_pred             cCCCeeeEEcCC--CcEEEEEEhHHhhcC
Confidence            999999999987  999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=3.8e-11  Score=100.59  Aligned_cols=99  Identities=21%  Similarity=0.285  Sum_probs=78.7

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      +++++++++++.+|++.|.++++..+||+|..             ++++|+++..|+++++...... +.....+.++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------~~~~Giv~~~dl~~~~~~~~~~-~~~~~~~~~v~~   67 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-------------GKYVGTISLTDILWKLKGLENL-DLERLVDLKVID   67 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-------------CcEEEEEeHHHHHHHhhccCch-hHHHHhCCcHHH
Confidence            57899999999999999999999999999863             7999999999999987542111 011112578999


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHHcCCCeEEeeec
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKS  135 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~~~  135 (433)
                      +|...   ++++.+++++.+|++.|.+ .+.+||.++
T Consensus        68 ~~~~~---~~~v~~~~~l~~a~~~~~~-~~~~~Vv~~  100 (116)
T cd04643          68 VMNTD---VPVIIDDADIEEILHLLID-QPFLPVVDD  100 (116)
T ss_pred             HhcCC---CceecCCCCHHHHHHHHhc-CCceeEEeC
Confidence            99865   8999999999999999984 235777643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.28  E-value=4.4e-11  Score=120.01  Aligned_cols=106  Identities=19%  Similarity=0.249  Sum_probs=90.7

Q ss_pred             chhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcc
Q 013939            7 YHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLE   86 (433)
Q Consensus         7 ~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~   86 (433)
                      ..+|+|+|..+++++++++++++.+|++.|.+++...+||+|.+             ++++|+|+..|+.+++....   
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~-------------g~~iG~vt~~dl~~~~~~~~---  259 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ-------------QQVQGVFTDGDLRRWLVGGG---  259 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC-------------CcEEEEecHHHHHHHHhCCC---
Confidence            46799999754458999999999999999999999999999963             79999999999988764321   


Q ss_pred             hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           87 DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        87 ~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                          ..+.+|.++|...   ++++.+++++.+|++.|. +++.++||+++
T Consensus       260 ----~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  302 (321)
T PRK11543        260 ----ALTTPVNEAMTRG---GTTLQAQSRAIDAKEILMKRKITAAPVVDE  302 (321)
T ss_pred             ----CcCCcHHHhcCCC---CEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence                1246799999865   889999999999999999 89999999864

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.28  E-value=4.2e-11  Score=99.02  Aligned_cols=106  Identities=19%  Similarity=0.197  Sum_probs=88.1

Q ss_pred             CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939          221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      +++.++.++.++.+|++.|.+ ++..+||+|+  +|  +++|+++..|++.....       ..+               
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~--~~~G~v~~~dl~~~~~~-------~~~---------------   55 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDK--DN--KLLGIVSLESLEQAYKE-------AKS---------------   55 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcC--CC--cEEEEEEHHHHHHHhhc-------CCc---------------
Confidence            357789999999999999998 8999999997  78  99999999999754200       000               


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML  379 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~  379 (433)
                                                      +      +                ..+...+.++.+++++.++++.|.
T Consensus        56 --------------------------------v------~----------------~~~~~~~~~v~~~~~~~~~~~~~~   81 (109)
T cd04583          56 --------------------------------L------E----------------DIMLEDVFTVQPDASLRDVLGLVL   81 (109)
T ss_pred             --------------------------------H------h----------------HhhcCCceEECCCCcHHHHHHHHH
Confidence                                            0      0                113557789999999999999999


Q ss_pred             HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          380 SHRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      +++.+++||+|++  |+++|+||.+|+++
T Consensus        82 ~~~~~~~~vv~~~--g~~~Gvit~~~l~~  108 (109)
T cd04583          82 KRGPKYVPVVDED--GKLVGLITRSSLVD  108 (109)
T ss_pred             HcCCceeeEECCC--CeEEEEEehHHhhc
Confidence            9999999999987  89999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=2.2e-11  Score=102.28  Aligned_cols=110  Identities=15%  Similarity=0.234  Sum_probs=84.3

Q ss_pred             CeEEEcCCCcHHHHHHhccc-C-CCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-D-PSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~-isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      +++++.++.++.+|++.|.+ + ...++|++   +|  +++|+++..|++.+...       .                 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~--~~~G~v~~~dl~~~~~~-------~-----------------   52 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE---KG--RLLGIFTERDIVRLTAI-------G-----------------   52 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC---CC--cEEEEEeHHHHHHHHhc-------C-----------------
Confidence            46789999999999999987 6 55677666   47  99999999999764200       0                 


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCC--CCHHHHHHH
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKIT--SSLAAVMAQ  377 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~--~sL~~v~~~  377 (433)
                                   .....            ..+      .                ..+..+++++.++  +++.+++++
T Consensus        53 -------------~~~~~------------~~i------~----------------~~~~~~~~~v~~~~~~~l~~a~~~   85 (115)
T cd04620          53 -------------KDLSD------------LPI------G----------------EVMTQPVVTLQESEIQDIFTALSL   85 (115)
T ss_pred             -------------CCccc------------cCH------H----------------HhcCCCcEEEecccccCHHHHHHH
Confidence                         00000            000      0                1145678889887  789999999


Q ss_pred             HHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939          378 MLSHRATHVWVTEDESDDVLVGVVGYADILVA  409 (433)
Q Consensus       378 m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~  409 (433)
                      |.+++.+++||+|++  |+++||||..||+++
T Consensus        86 ~~~~~~~~~pVvd~~--~~~~Gvit~~dl~~~  115 (115)
T cd04620          86 FRQHQIRHLPVLDDQ--GQLIGLVTAESIRQV  115 (115)
T ss_pred             HHHhCCceEEEEcCC--CCEEEEEEhHHhhcC
Confidence            999999999999987  999999999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=3.3e-11  Score=100.49  Aligned_cols=108  Identities=18%  Similarity=0.241  Sum_probs=87.6

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      ++.++.++.++.+|++.|.+ +++.+||+|+  +|  +++|+++..|+..+...       .     .         +  
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~--~~~G~v~~~dl~~~~~~-------~-----~---------~--   54 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN--EE--KLKGVVTFTDILDLDLF-------E-----S---------F--   54 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcC--CC--CEEEEEehHHhHHHHhh-------c-----c---------c--
Confidence            47789999999999999988 8999999997  78  99999999999764200       0     0         0  


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                       ..         .                 .+      +                ..+..++.++.+++++.+++..|.+
T Consensus        55 -~~---------~-----------------~v------~----------------~~~~~~~~~v~~~~~l~~~~~~~~~   85 (111)
T cd04626          55 -LE---------K-----------------KV------F----------------NIVSQDVFYVNEEDTIDEALDIMRE   85 (111)
T ss_pred             -cc---------C-----------------cH------H----------------HHhcCCcEEEcCCCcHHHHHHHHHH
Confidence             00         0                 00      0                1246688899999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||+|+   |+++|+||+.||+.
T Consensus        86 ~~~~~~~Vv~~---~~~~G~it~~di~~  110 (111)
T cd04626          86 KQIGRLPVVDD---NKLIGVVRTKDILD  110 (111)
T ss_pred             cCCCeeeEeEC---CEEEEEEEhHHhcc
Confidence            99999999997   79999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=5.8e-11  Score=98.64  Aligned_cols=96  Identities=28%  Similarity=0.389  Sum_probs=80.3

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      ++++++++.++.+|++.|.++++..+||+|.+             ++++|+++..|+++++.....     .....++.+
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------~~~~Giv~~~~l~~~~~~~~~-----~~~~~~~~~   63 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-------------GRLVGIFSERDIVRKVALRGA-----SALDTPVSE   63 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-------------CCEEEEEehHHHHHHHhhcCC-----CccccCHHH
Confidence            56889999999999999999999999999863             799999999999987754211     011357889


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      +|...   ++.+.+++++.++++.|. .+.+++||.++
T Consensus        64 ~~~~~---~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~   98 (113)
T cd04623          64 IMTRN---VITVTPDDTVDEAMALMTERRFRHLPVVDG   98 (113)
T ss_pred             hcCCC---cEEECCCCcHHHHHHHHHHcCCCEeEEEeC
Confidence            99754   899999999999999999 78889998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=4.2e-11  Score=102.93  Aligned_cols=117  Identities=17%  Similarity=0.174  Sum_probs=83.7

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.+++++.+|++.|.+ +...++|+|+  +|  +++|+++..|++.....   .+...       .+.    .+  
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~--~~~Giv~~~dl~~~~~~---~~~~~-------~~~----~~--   61 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS--DD--NFIGVITAVDLLGEEPI---KRIQE-------GGI----SR--   61 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC--CC--cEEEEEEHHHHhhChhh---HHHHH-------cCC----Cc--
Confidence            47899999999999999988 8889999997  78  99999999999863200   00000       000    00  


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeE--e----cCCCCHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLT--C----KITSSLAAV  374 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it--~----~p~~sL~~v  374 (433)
                                  ..               ..+      .                ..|..+.++  .    .+++++.++
T Consensus        62 ------------~~---------------~~v------~----------------~im~~~~~~~~~~~~~~~~~~l~~~   92 (126)
T cd04640          62 ------------SE---------------LTV------A----------------DVMTPKEDLKALDLEELENASVGDV   92 (126)
T ss_pred             ------------hh---------------eEH------H----------------HhcCchhhhccccHHHhccCcHHHH
Confidence                        00               000      0                113333332  3    368999999


Q ss_pred             HHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          375 MAQMLSHRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       375 ~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      +.+|.+++.+++||+|++ .|+++|+||++||++
T Consensus        93 l~~m~~~~~~~lpVvd~~-~~~~~G~it~~di~~  125 (126)
T cd04640          93 VETLKASGRQHALVVDRE-HHQIRGIISTSDIAR  125 (126)
T ss_pred             HHHHHHCCCceEEEEECC-CCEEEEEEeHHHHhh
Confidence            999999999999999984 269999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=6.4e-11  Score=101.59  Aligned_cols=100  Identities=21%  Similarity=0.384  Sum_probs=80.1

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC---Ccch----HHhh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD---CLED----QDKA   91 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~---~l~~----~~~~   91 (433)
                      +++.+++++++.+|++.|.+++++.+||+|.+             ++++|+++..|+..++....   ....    ....
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-------------~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~   68 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-------------GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERM   68 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-------------CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhh
Confidence            56789999999999999999999999999964             79999999999998654310   0000    1123


Q ss_pred             cCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeee
Q 013939           92 MKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPK  134 (433)
Q Consensus        92 l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~  134 (433)
                      ...++.++|..+   ++++.+++++.++++.|. ++.+.+||..
T Consensus        69 ~~~~~~~~~~~~---~~~v~~~~~l~~~l~~~~~~~~~~~~V~~  109 (128)
T cd04632          69 LDLPVYDAMSSP---VITASPNDSVRDAVDRMLENDDSSVVVVT  109 (128)
T ss_pred             ccCcHHHHhcCC---CceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence            456899999754   999999999999999999 6788888864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=7.8e-11  Score=101.94  Aligned_cols=101  Identities=21%  Similarity=0.363  Sum_probs=80.9

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcc------------
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLE------------   86 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~------------   86 (433)
                      +++++++++++.+|++.|.+++..++||+|.+             ++++|+++..|+++++.......            
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-------------~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~   68 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-------------GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLD   68 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-------------CCEEEEEeHHHHHHHHhccCCcccccccccccccc
Confidence            46889999999999999999999999999863             79999999999998875421110            


Q ss_pred             -hH-HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           87 -DQ-DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        87 -~~-~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                       +. ......++.++|...   ++.+.+++++.++++.|. .+.+++||.++
T Consensus        69 ~~~~~~~~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~  117 (132)
T cd04636          69 ESKIKKLLGKKVEEIMTKK---VITVDEDTTIEDVARIMSKKNIKRLPVVDD  117 (132)
T ss_pred             hHHHHHHcCCCHHHhccCC---ceEECCCCcHHHHHHHHHHCCCCeeEEEEC
Confidence             00 111124889999754   889999999999999998 78899999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.26  E-value=3.4e-11  Score=100.41  Aligned_cols=103  Identities=16%  Similarity=0.155  Sum_probs=83.6

Q ss_pred             EEcCCCcHHHHHHhccc-C-----CCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCC
Q 013939          225 SIEASVPAIEATLKAPG-D-----PSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTP  298 (433)
Q Consensus       225 tv~~~~~v~ea~~~M~~-~-----isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~  298 (433)
                      ++.+++++.++++.|.+ .     ...+||+|+  +|  +++|+++.+|+.+.. .       ..++.            
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~--~~--~~~G~v~~~~l~~~~-~-------~~~v~------------   56 (109)
T cd04606           1 AVREDWTVGEALEYLRRNADDPETIYYIYVVDE--EG--RLLGVVSLRDLLLAD-P-------DTPVS------------   56 (109)
T ss_pred             CccccCcHHHHHHHHHhccCcccceeEEEEECC--CC--CEEEEEEHHHHhcCC-C-------cchHH------------
Confidence            36789999999999987 5     368999997  78  999999999986421 0       00000            


Q ss_pred             CCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHH
Q 013939          299 RSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQM  378 (433)
Q Consensus       299 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m  378 (433)
                                                                               ..+..++.++.+++++.++++.|
T Consensus        57 ---------------------------------------------------------~~~~~~~~~i~~~~~~~~~~~~~   79 (109)
T cd04606          57 ---------------------------------------------------------DIMDTDVISVSADDDQEEVARLF   79 (109)
T ss_pred             ---------------------------------------------------------HHhCCCCeEEcCCCCHHHHHHHH
Confidence                                                                     11355789999999999999999


Q ss_pred             HHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHH
Q 013939          379 LSHRATHVWVTEDESDDVLVGVVGYADILVAV  410 (433)
Q Consensus       379 ~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i  410 (433)
                      .+++.+++||+|++  ++++|+||..||++++
T Consensus        80 ~~~~~~~~~Vv~~~--~~~~Gvit~~dll~~~  109 (109)
T cd04606          80 EKYDLLALPVVDEE--GRLVGIITVDDVIDVI  109 (109)
T ss_pred             HHcCCceeeeECCC--CcEEEEEEhHHhhhhC
Confidence            99999999999987  8999999999999763

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.25  E-value=2.6e-11  Score=129.14  Aligned_cols=109  Identities=13%  Similarity=0.070  Sum_probs=88.7

Q ss_pred             eEEEcCCCcHHHHHHhccc-CCCeeEEecCC-CCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          223 YSSIEASVPAIEATLKAPG-DPSAIAVLEPT-SEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       223 vitv~~~~~v~ea~~~M~~-~isavpVVd~~-~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      .+++.+++++.+|+++|.+ +++.+||||++ ++|  +++|+||.+|++... .     ....++.              
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g--kLvGIVT~~DLr~~~-~-----~~~~~V~--------------  164 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG--KLLGIVTSRDYRISR-M-----SLDTKVK--------------  164 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC--EEEEEEEcHHhhccc-c-----CCCCCHH--------------
Confidence            4699999999999999999 89999999951 136  999999999996421 0     0000000              


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCC--CCCeEecCCCCHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGR--STPLTCKITSSLAAVMAQM  378 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~it~~p~~sL~~v~~~m  378 (433)
                                                                             ..|+  .+++++++++++.+|+++|
T Consensus       165 -------------------------------------------------------dIMt~~~~~itv~~d~~l~eAl~lM  189 (502)
T PRK07107        165 -------------------------------------------------------DFMTPFEKLVTANEGTTLKEANDII  189 (502)
T ss_pred             -------------------------------------------------------HHhCCCCCeEEECCCCcHHHHHHHH
Confidence                                                                   1134  3789999999999999999


Q ss_pred             HHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHH
Q 013939          379 LSHRATHVWVTEDESDDVLVGVVGYADILVAV  410 (433)
Q Consensus       379 ~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i  410 (433)
                      .++++++|||||++  ++|+|+||+.||++..
T Consensus       190 ~e~~i~~LPVVD~~--g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        190 WDHKLNTLPIVDKN--GNLVYLVFRKDYDSHK  219 (502)
T ss_pred             HHcCCCEEEEEcCC--CeEEEEEEhHHHHhcc
Confidence            99999999999987  8999999999999976

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.25  E-value=9.9e-11  Score=98.41  Aligned_cols=97  Identities=26%  Similarity=0.333  Sum_probs=80.7

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      +++.++++++++.+|++.|.++++..+||+|..             ++++|+++..|+.+.+.+...      .-..++.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------~~~~G~v~~~dl~~~~~~~~~------~~~~~~~   61 (115)
T cd04593           1 PPPPVLSATTPLREAAEQLIESKHGSALVVDRD-------------GGVVGIITLPDLLRALEADEA------GEPSAVD   61 (115)
T ss_pred             CCCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-------------CCEEEEEEHHHHHHHHhcccc------cccccHH
Confidence            356789999999999999999999999999863             799999999999987654211      1124588


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV  136 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~  136 (433)
                      ++|..+   ++++.+++++.+|++.|. ++.+++||.+++
T Consensus        62 ~~~~~~---~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~   98 (115)
T cd04593          62 EVATPP---LLTVHPDEPLAHALDRMASRGLRQLPVVDRG   98 (115)
T ss_pred             HhccCC---ceEECCCCCHHHHHHHHHHcCCceeeEEeCC
Confidence            888755   899999999999999999 789999998653

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.25  E-value=2.6e-11  Score=131.29  Aligned_cols=127  Identities=13%  Similarity=0.165  Sum_probs=100.6

Q ss_pred             CCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchh
Q 013939          209 PLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQ  287 (433)
Q Consensus       209 ~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~  287 (433)
                      ...++++  +|++++.++++++++.|+++.|.+ +...+||+|+  +|  +++|+||.+|+++....             
T Consensus       445 ~~~~V~d--im~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~--~g--~lvGiVt~~dL~~~l~~-------------  505 (574)
T PRK01862        445 RTTQMRE--LIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD--DG--RFRGAVALKDITSDLLD-------------  505 (574)
T ss_pred             hhCcHHH--HhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC--CC--eEEEEEEHHHHHHHhhc-------------
Confidence            3445665  688899999999999999999998 8999999998  78  99999999999763200             


Q ss_pred             hhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecC
Q 013939          288 FVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKI  367 (433)
Q Consensus       288 f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p  367 (433)
                            .                  +..+.            ..+      +                +.+..++.++++
T Consensus       506 ------~------------------~~~~~------------~~v------~----------------dim~~~~~~v~~  527 (574)
T PRK01862        506 ------K------------------RDTTD------------KTA------A----------------DYAHTPFPLLTP  527 (574)
T ss_pred             ------c------------------ccccc------------chH------H----------------HhccCCCeeECC
Confidence                  0                  00000            000      0                225778899999


Q ss_pred             CCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          368 TSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       368 ~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      ++++.+++++|.+++.+++||||+++.++++|+||++||++++.+
T Consensus       528 d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        528 DMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             CCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence            999999999999999999999998622489999999999999864

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.25  E-value=3.6e-11  Score=100.25  Aligned_cols=110  Identities=16%  Similarity=0.165  Sum_probs=88.3

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      ++.++.+++++.++++.|.+ +.+.+||+|+  +|  +++|+++..|++.+....            + .+         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~--~~--~~~G~v~~~~i~~~~~~~------------~-~~---------   56 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE--DG--RLVGIFTDGDLRRALEKG------------L-DI---------   56 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcC--CC--CEEEEechHHHHHHHhcc------------C-cc---------
Confidence            46788999999999999988 7899999998  78  999999999998653100            0 00         


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                  ..               ..+                 +     ..+..++.+|.+++++.+++++|.+
T Consensus        57 ------------~~---------------~~v-----------------~-----~~~~~~~~~v~~~~~~~~~~~~~~~   87 (114)
T cd04604          57 ------------LT---------------LPV-----------------A-----DVMTRNPKTIDPDALAAEALELMEE   87 (114)
T ss_pred             ------------cc---------------CCH-----------------H-----HhhccCCeEECCCCcHHHHHHHHHH
Confidence                        00               000                 0     2245677899999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||+|++  ++++|+||..||++
T Consensus        88 ~~~~~~~Vv~~~--~~~iG~it~~di~~  113 (114)
T cd04604          88 NKITALPVVDDN--GRPVGVLHIHDLLR  113 (114)
T ss_pred             cCCCEEEEECCC--CCEEEEEEHHHhhc
Confidence            999999999987  89999999999986

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.25  E-value=5.4e-11  Score=98.53  Aligned_cols=106  Identities=17%  Similarity=0.205  Sum_probs=85.0

Q ss_pred             CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939          221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      ++++++.+++++.++++.|.+ +.+++||+|+  +|  +++|++|.+|+++.. .      ...                
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~--~~~G~v~~~~l~~~~-~------~~~----------------   54 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDD--DG--KLVGIVTNRDLRFET-D------LDK----------------   54 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcC--CC--EEEEEEEhhHeeecc-c------CCC----------------
Confidence            357889999999999999988 8999999997  78  999999999986431 0      000                


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecC-CCCHHHHHHHH
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKI-TSSLAAVMAQM  378 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p-~~sL~~v~~~m  378 (433)
                                                     .+      .                ..+...+.++.+ ++++.+++.+|
T Consensus        55 -------------------------------~v------~----------------~~~~~~~~~~~~~~~~l~~~~~~~   81 (110)
T cd04601          55 -------------------------------PV------S----------------EVMTPENLLTTVEGTSLEEALELL   81 (110)
T ss_pred             -------------------------------CH------H----------------HhcccCceEEecCCCCHHHHHHHH
Confidence                                           00      0                112344556666 99999999999


Q ss_pred             HHcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          379 LSHRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       379 ~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      .+++.+++||+|++  |+++|+||.+|+++
T Consensus        82 ~~~~~~~~~Vv~~~--~~~~Gvi~~~dil~  109 (110)
T cd04601          82 HEHKIEKLPVVDDE--GKLKGLITVKDIEK  109 (110)
T ss_pred             HHhCCCeeeEEcCC--CCEEEEEEhhhhhc
Confidence            99999999999987  89999999999985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.25  E-value=1.2e-10  Score=98.77  Aligned_cols=102  Identities=16%  Similarity=0.258  Sum_probs=81.8

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch---H-HhhcC
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED---Q-DKAMK   93 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~---~-~~~l~   93 (433)
                      ++++++++++++.+|++.|.++++..+||++..             ++++|+++..|++.++........   . ...-.
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~   68 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-------------RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKP   68 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-------------CCEEEEEEHHHHHhhhcccccchhhhhhhccccc
Confidence            578999999999999999999999999999863             799999999999987653211000   0 00123


Q ss_pred             CcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           94 TPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        94 ~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      .++.++|...   ++++.+++++.++++.|. ++.+++||+++
T Consensus        69 ~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~  108 (124)
T cd04600          69 ETVGDIMSPP---VVTVRPDTPIAELVPLLADGGHHHVPVVDE  108 (124)
T ss_pred             ccHHHhccCC---CeeeCCCCcHHHHHHHHHhcCCCceeEEcC
Confidence            5788999754   899999999999999999 78999999764

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.24  E-value=1.4e-10  Score=97.16  Aligned_cols=93  Identities=20%  Similarity=0.261  Sum_probs=79.1

Q ss_pred             eEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchhc
Q 013939           20 LAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQV   99 (433)
Q Consensus        20 lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~I   99 (433)
                      .+++++++++.+|++.|.++++..+||+|.+             ++++|+++..|++..+.+..       ..+.++.++
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------~~~~G~v~~~dl~~~~~~~~-------~~~~~v~~~   63 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDEN-------------GRLLGTVTDGDIRRALLKGL-------SLDDPVSEV   63 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCC-------------CCEEEEEEcHHHHHHHhcCC-------CcCCCHHHh
Confidence            3789999999999999999999999999863             79999999999987664321       124678899


Q ss_pred             cccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939          100 IVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus       100 m~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      |...   +.++.+++++.++++.|. ++.+++||+++
T Consensus        64 ~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   97 (113)
T cd04607          64 MNRN---PITAKVGSSREEILALMRERSIRHLPILDE   97 (113)
T ss_pred             hcCC---CEEEcCCCCHHHHHHHHHHCCCCEEEEECC
Confidence            9754   889999999999999999 77999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.24  E-value=1.3e-10  Score=121.06  Aligned_cols=163  Identities=16%  Similarity=0.120  Sum_probs=124.0

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      .|...+|+|+|.-..++++++.+++++++++.+.+++.+++||++..            .++++||++..|++.++..+ 
T Consensus       187 ~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~------------~d~ivGiv~~kDll~~~~~~-  253 (408)
T TIGR03520       187 SFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET------------IDNITGVLYIKDLLPHLNKK-  253 (408)
T ss_pred             ccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC------------CCceEEEEEHHHHHhHhccC-
Confidence            57788999999755689999999999999999999999999999854            36899999999999765321 


Q ss_pred             CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939           84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS  162 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  162 (433)
                               +.++.++|.+    ++.+.+++++.++++.|. ++.|..+|+++-                          
T Consensus       254 ---------~~~l~~~~~~----~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~--------------------------  294 (408)
T TIGR03520       254 ---------NFDWQSLLRE----PYFVPENKKLDDLLRDFQEKKNHLAIVVDEY--------------------------  294 (408)
T ss_pred             ---------CCCHHHHcCC----CeEeCCCCcHHHHHHHHHhcCceEEEEEcCC--------------------------
Confidence                     1346778763    789999999999999999 567777776542                          


Q ss_pred             cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHcc-CCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc
Q 013939          163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCL-GALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG  241 (433)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~-~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~  241 (433)
                                          |...||||.+||++.+.+.+ ++... ....+.   -.......++...++.+..+.|.-
T Consensus       295 --------------------G~~~GiVT~eDileeivgei~de~d~-~~~~i~---~~~~~~~~v~G~~~l~~l~~~l~~  350 (408)
T TIGR03520       295 --------------------GGTSGLVTLEDIIEEIVGDISDEFDD-EDLIYS---KIDDNNYVFEGKTSLKDFYKILKL  350 (408)
T ss_pred             --------------------CCEEEEEEHHHHHHHHhCCCCCcCCc-CccceE---EeCCCeEEEEeccCHHHHHHHhCC
Confidence                                23589999999999885322 22111 111121   123457888889999999888864


Q ss_pred             C
Q 013939          242 D  242 (433)
Q Consensus       242 ~  242 (433)
                      .
T Consensus       351 ~  351 (408)
T TIGR03520       351 E  351 (408)
T ss_pred             C
Confidence            3

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=6.2e-11  Score=101.74  Aligned_cols=115  Identities=19%  Similarity=0.200  Sum_probs=89.2

Q ss_pred             ccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCCCCCCCcCCCCC
Q 013939          106 LLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRD  184 (433)
Q Consensus       106 ~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (433)
                      .++++++++++.+|++.|. +++..+||.+++                                              ++
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~----------------------------------------------~~   35 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK----------------------------------------------GK   35 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCC----------------------------------------------Cc
Confidence            3788999999999999998 678888887543                                              24


Q ss_pred             eEEEeeHHHHHHHHHHccCCCCCCCCC-------Ccc-cccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCC
Q 013939          185 KFCCLSREDVIRFLIGCLGALAPLPLS-------SIS-SLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSED  255 (433)
Q Consensus       185 ~~~iiTq~Dvi~~l~~~~~~l~~l~~~-------tV~-~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g  255 (433)
                      .+|+||+.|++++..+.... ......       .+. ....+..+++++.+++++.+|+++|.+ +...+||||+  +|
T Consensus        36 ~~Giv~~~dl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~--~~  112 (126)
T cd04642          36 LIGNISASDLKGLLLSPDDL-LLYRTITFKELSEKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE--EG  112 (126)
T ss_pred             EEEEEEHHHhhhhhcCcchh-hcccchhhhhhhhhcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC--CC
Confidence            68999999999977432111 110000       011 123567789999999999999999999 8999999997  78


Q ss_pred             cceEEeecchhhhhhc
Q 013939          256 QYKIIGEISASKLWKC  271 (433)
Q Consensus       256 ~~klvGiIS~~DL~~~  271 (433)
                        +++|+||..|+..|
T Consensus       113 --~~~Giit~~dil~~  126 (126)
T cd04642         113 --KPIGVITLTDIISI  126 (126)
T ss_pred             --CEEEEEEHHHHhcC
Confidence              99999999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.23  E-value=6.1e-11  Score=98.65  Aligned_cols=110  Identities=14%  Similarity=0.164  Sum_probs=88.7

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.+++++.++++.|.+ +++.+||+|+  +|  +++|+|+..||..+....                         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~--~~~G~v~~~~l~~~~~~~-------------------------   52 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD--DG--RLVGIVSLDDIREILFDP-------------------------   52 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECC--CC--CEEEEEEHHHHHHHHhcc-------------------------
Confidence            57889999999999999998 8899999998  77  999999999997642000                         


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                  .....            ..+      .                ..+..++.++.+++++.+++..|..
T Consensus        53 ------------~~~~~------------~~v------~----------------~~~~~~~~~v~~~~~~~~~~~~~~~   86 (114)
T cd04613          53 ------------SLYDL------------VVA------S----------------DIMTKPPVVVYPEDSLEDALKKFED   86 (114)
T ss_pred             ------------ccccc------------EEH------H----------------HhccCCCcEEcCCCCHHHHHHHHhh
Confidence                        00000            000      0                1246678999999999999999999


Q ss_pred             cCCCEEEEEeC-CCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTED-ESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~-~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||+|+ +  ++++|+||..||+.
T Consensus        87 ~~~~~~~Vv~~~~--~~~~Gvvt~~di~~  113 (114)
T cd04613          87 SDYEQLPVVDDDP--GKLLGILSRSDLLS  113 (114)
T ss_pred             CCccEeeEEeCCC--CEEEEEEEhHHhhc
Confidence            99999999998 6  89999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=3.4e-11  Score=100.25  Aligned_cols=108  Identities=16%  Similarity=0.157  Sum_probs=87.6

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      ++.++.+++++.+|++.|.+ +...+||+++  +|  +++|+++..|+.++...       .                  
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~--~~--~~~G~v~~~~l~~~~~~-------~------------------   52 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDG--DG--HLVGLLTRDDLIRALAE-------G------------------   52 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECC--CC--cEEEEeeHHHHHHHHHh-------c------------------
Confidence            46789999999999999988 7899999997  78  99999999999764200       0                  


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                  .. +.             .+  .                    ..+..++.++.+++++.+++..|.+
T Consensus        53 ------------~~-~~-------------~v--~--------------------~~~~~~~~~i~~~~~~~~~~~~~~~   84 (111)
T cd04639          53 ------------GP-DA-------------PV--R--------------------GVMRRDFPTVSPSATLDAVLRLMQQ   84 (111)
T ss_pred             ------------CC-CC-------------cH--H--------------------HHhcCCCcEECCCCcHHHHHHHHHh
Confidence                        00 00             00  0                    1135678899999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||+|++  |+++|+||..||++
T Consensus        85 ~~~~~~~Vv~~~--~~~~G~it~~dl~~  110 (111)
T cd04639          85 GGAPAVPVVDGS--GRLVGLVTLENVGE  110 (111)
T ss_pred             cCCceeeEEcCC--CCEEEEEEHHHhhc
Confidence            999999999987  89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.23  E-value=1.8e-10  Score=96.07  Aligned_cols=94  Identities=20%  Similarity=0.275  Sum_probs=79.0

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      +.+++++++++++|++.|.+++...+||+|.              ++++|+++..|++..+.+...      ....++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~v~~~~l~~~~~~~~~------~~~~~i~~   61 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG--------------DPRLGIVTRTDLLDAVLLDGL------PSSTPVGE   61 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--------------CeEEEEEEHHHHHHHHHcCCC------CCCCCHHH
Confidence            4678999999999999999999999999984              589999999999987653211      12467889


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      +|.+.   ++.+.+++++.++++.|. ++.+++||.++
T Consensus        62 ~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   96 (111)
T cd04589          62 IATFP---LITVDPDDFLFNALLLMTRHRIHRVVVREG   96 (111)
T ss_pred             HhCCC---cEEECCCCcHHHHHHHHHHhCccEEEEeeC
Confidence            99754   899999999999999999 78999999753

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=1.4e-10  Score=98.60  Aligned_cols=103  Identities=22%  Similarity=0.349  Sum_probs=82.3

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch-----HHhhc
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED-----QDKAM   92 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~-----~~~~l   92 (433)
                      ++++++++++++.+|++.|.++++..+||+|.+            .++++|+|+..|++.++.+......     .....
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~------------~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~   68 (125)
T cd04631           1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEG------------TGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAI   68 (125)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCcccceeEeCC------------CCEEEEEEEHHHHHHHhhccchhccccccccchhh
Confidence            357889999999999999999999999999863            1799999999999988764311110     01123


Q ss_pred             CCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           93 KTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        93 ~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      ..++.++|.+.   ++++++++++.++++.|. .+.+.++|.++
T Consensus        69 ~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~  109 (125)
T cd04631          69 NEPVRSIMTRN---VITITPDDSIKDAAELMLEKRVGGLPVVDD  109 (125)
T ss_pred             hcCHHHHhcCC---ceEeCCCCcHHHHHHHHHHcCCceEEEEcC
Confidence            46788898754   999999999999999999 78888988754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=8.2e-11  Score=98.10  Aligned_cols=109  Identities=15%  Similarity=0.213  Sum_probs=87.9

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      ++.++.++.++.+|++.|.+ +...+||+|+  +|  +++|+++..|+++....                   +.  +  
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~--~~~G~v~~~~l~~~~~~-------------------~~--~--   54 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP--DE--RPIGIVTERDIVRAVAA-------------------GI--D--   54 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECC--CC--CEEEEeeHHHHHHHHhc-------------------cC--C--
Confidence            46789999999999999988 8899999998  78  99999999999753200                   00  0  


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                  ..               ..+.                      ..+..++.+|.+++++.+++.+|.+
T Consensus        55 ------------~~---------------~~v~----------------------~~~~~~~~~v~~~~~~~~~~~~~~~   85 (112)
T cd04624          55 ------------LD---------------TPVS----------------------EIMTRDLVTVDPDEPVAEAAKLMRK   85 (112)
T ss_pred             ------------Cc---------------cCHH----------------------HhccCCCEEECCCCcHHHHHHHHHH
Confidence                        00               0000                      1145678899999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+.+||+|++  |+++|+||..||++
T Consensus        86 ~~~~~~~Vv~~~--g~~~Gilt~~dl~~  111 (112)
T cd04624          86 NNIRHHLVVDKG--GELVGVISIRDLVR  111 (112)
T ss_pred             cCccEEEEEcCC--CcEEEEEEHHHhcc
Confidence            999999999987  89999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=1.1e-10  Score=97.40  Aligned_cols=97  Identities=21%  Similarity=0.281  Sum_probs=80.3

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      +++++++++++.+|++.|.++++.++||++.+             ++++|+++..|+++.+.+...    ......++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------~~~~G~v~~~~l~~~~~~~~~----~~~~~~~v~~   64 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-------------GNLVGFLSEQDCLKQLLESSY----HCDGVATVRD   64 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-------------CeEEEEeehHHHHHHhhhhhh----ccCCCccHHH
Confidence            56889999999999999999999999999863             799999999999987654210    0112467899


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      +|...   ++.+.+++++.++++.|. ++.+++||.++
T Consensus        65 ~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   99 (114)
T cd04629          65 IMTTE---VLTVSPDDSIVDLAQLMLKAKPKRYPVVDD   99 (114)
T ss_pred             HhccC---ceEECCCCcHHHHHHHHHHhCCCccCEEEC
Confidence            99754   889999999999999999 77888988764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.22  E-value=1.1e-10  Score=97.18  Aligned_cols=107  Identities=22%  Similarity=0.240  Sum_probs=86.8

Q ss_pred             CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939          221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      ++++++.++.++.+|.+.|.+ +.+.+||+|+   |  +++|+++..|+..+. ..   .+..                 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~--~~~G~v~~~dl~~~~-~~---~~~~-----------------   55 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG---G--RVVGIISRRDVEKAL-RH---GLGH-----------------   55 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC---C--EEEEEEEHHHHHHHH-hc---cccc-----------------
Confidence            467899999999999999988 8889999994   6  999999999987642 00   0000                 


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML  379 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~  379 (433)
                                   .                 .+.                      ..+..+++++.+++++.+++.+|.
T Consensus        56 -------------~-----------------~~~----------------------~~~~~~~~~v~~~~~l~~~~~~~~   83 (110)
T cd04595          56 -------------A-----------------PVK----------------------DYMSTDVVTVPPDTPLSEVQELMV   83 (110)
T ss_pred             -------------C-----------------cHH----------------------HHhcCCCEEECCCCcHHHHHHHHH
Confidence                         0                 000                      124568889999999999999999


Q ss_pred             HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          380 SHRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      +++.+++||+| +  |+++|+||..||++
T Consensus        84 ~~~~~~~~V~~-~--~~~~Gvvt~~di~~  109 (110)
T cd04595          84 EHDIGRVPVVE-D--GRLVGIVTRTDLLR  109 (110)
T ss_pred             HcCCCeeEEEe-C--CEEEEEEEhHHhhc
Confidence            99999999999 4  89999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.22  E-value=7.7e-11  Score=97.74  Aligned_cols=110  Identities=16%  Similarity=0.249  Sum_probs=88.5

Q ss_pred             CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939          221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      ++++++.+++++.++++.|.+ +.+.+||+|+   |  +++|+++..|+.......               +      ..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~--~~~G~v~~~dl~~~~~~~---------------~------~~   54 (111)
T cd04612           1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD---G--RLVGIVTLADIRRVPAEG---------------R------EA   54 (111)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC---C--eEEEEEEHHHHHHHHhcC---------------c------cc
Confidence            357889999999999999998 8889999994   6  999999999997642000               0      00


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML  379 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~  379 (433)
                                   ..                .+  .                    +.+..++.+|.+++++.+++++|.
T Consensus        55 -------------~~----------------~~--~--------------------~~~~~~~~~v~~~~~~~~~~~~~~   83 (111)
T cd04612          55 -------------TV----------------LV--G--------------------DVMTRDPVTASPDETLRDALKRMA   83 (111)
T ss_pred             -------------cc----------------CH--H--------------------HhccCCCeEECCCCCHHHHHHHHH
Confidence                         00                00  0                    224678899999999999999999


Q ss_pred             HcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939          380 SHRATHVWVTEDESDDVLVGVVGYADILVA  409 (433)
Q Consensus       380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~  409 (433)
                      +++.+++||+|++  ++++|+||..||+++
T Consensus        84 ~~~~~~~~V~~~~--~~~~G~it~~di~~~  111 (111)
T cd04612          84 ERDIGRLPVVDDS--GRLVGIVSRSDLLRA  111 (111)
T ss_pred             hCCCCeeeEEcCC--CCEEEEEEHHHhhhC
Confidence            9999999999987  899999999999863

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.22  E-value=1.1e-10  Score=98.04  Aligned_cols=119  Identities=17%  Similarity=0.218  Sum_probs=88.7

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      ++.++.++.++.+|++.|.+ ++..+||+|+   |  +++|+++..|++.+....    .......++..          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~--~~~G~i~~~~l~~~~~~~----~~~~~~~~~~~----------   62 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR---G--KLVGIVTDRDLKLASPSK----ATTLDIWELYY----------   62 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC---C--eEEEEEeHHHHHHhhhcc----cccccchhhhh----------
Confidence            57789999999999999998 8889999994   7  999999999998753100    00000000000          


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                       .       .  +.               ..+                 .     ..+..++++|.+++++.+++..|.+
T Consensus        63 -~-------~--~~---------------~~~-----------------~-----~~~~~~~~~v~~~~~l~~~~~~~~~   95 (122)
T cd04585          63 -L-------L--SK---------------IKV-----------------S-----DIMTRDPITVSPDASVEEAAELMLE   95 (122)
T ss_pred             -h-------h--cc---------------cCH-----------------H-----HhccCCCeEeCCCCcHHHHHHHHHH
Confidence             0       0  00               000                 0     2246688999999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||+|++  |+++|+||..||++
T Consensus        96 ~~~~~~~Vv~~~--~~~~Gvvt~~di~~  121 (122)
T cd04585          96 RKISGLPVVDDQ--GRLVGIITESDLFR  121 (122)
T ss_pred             cCCCceeEECCC--CcEEEEEEHHHhhh
Confidence            999999999987  89999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=1.1e-10  Score=97.33  Aligned_cols=109  Identities=14%  Similarity=0.212  Sum_probs=83.5

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      ++.++.+++++.+|++.|.+ +...++|.+   +|  +++|+++..|+++.....                   ...+. 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~~--~~~G~v~~~dl~~~~~~~-------------------~~~~~-   56 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME---RG--ELVGLLTFREVLQAMAQH-------------------GAGVL-   56 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee---CC--EEEEEEEHHHHHHHHHhc-------------------CCchh-
Confidence            47789999999999999987 676666665   57  999999999997642000                   00000 


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                   .               ..+      .                ..+..++.++.+++++.+++.+|.+
T Consensus        57 -------------~---------------~~v------~----------------~~~~~~~~~v~~~~~l~~a~~~m~~   86 (112)
T cd04625          57 -------------D---------------TTV------R----------------AIMNPEPIVASPDDSIDEVRRLMVE   86 (112)
T ss_pred             -------------c---------------CCH------H----------------HHhCCCCeEECCCCCHHHHHHHHHH
Confidence                         0               000      0                1145678899999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||+|+   |+++|+||.+||++
T Consensus        87 ~~~~~l~Vv~~---~~~~Gvvt~~dl~~  111 (112)
T cd04625          87 RHLRYLPVLDG---GTLLGVISFHDVAK  111 (112)
T ss_pred             cCCCeeeEEEC---CEEEEEEEHHHhhc
Confidence            99999999985   89999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.22  E-value=6.6e-11  Score=124.74  Aligned_cols=113  Identities=17%  Similarity=0.163  Sum_probs=95.1

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC---CcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccc
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE---DQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVE  293 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~---g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~  293 (433)
                      .|.++++++.+++++.+|+++|.+ +++++||+|+  +   +  +++|+||.+||+... .      ..           
T Consensus        85 ~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~--~~~~~--~lvGIVt~rDL~~~~-~------~~-----------  142 (450)
T TIGR01302        85 GIISDPVTISPETTVADVLELMERKGISGIPVVED--GDMTG--KLVGIITKRDIRFVK-D------KG-----------  142 (450)
T ss_pred             ceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeC--CCCCC--eEEEEEEHHHHhhhh-c------CC-----------
Confidence            466789999999999999999999 9999999997  6   6  999999999996421 0      00           


Q ss_pred             cCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCC-CCCeEecCCCCHH
Q 013939          294 DNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGR-STPLTCKITSSLA  372 (433)
Q Consensus       294 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~it~~p~~sL~  372 (433)
                                         .                 .+      .                ..|+ .+++++.++++|.
T Consensus       143 -------------------~-----------------~V------~----------------dvm~~~~~~~V~~~~sl~  164 (450)
T TIGR01302       143 -------------------K-----------------PV------S----------------EVMTREEVITVPEGIDLE  164 (450)
T ss_pred             -------------------C-----------------CH------H----------------HhhCCCCCEEECCCCcHH
Confidence                               0                 00      0                1135 4899999999999


Q ss_pred             HHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          373 AVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       373 ~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      +++..|.+++++++||||++  |+++|+||+.||++.+..
T Consensus       165 eal~~m~~~~~~~lpVVDe~--G~lvGiVT~~DIl~~~~~  202 (450)
T TIGR01302       165 EALKVLHEHRIEKLPVVDKN--GELVGLITMKDIVKRRKF  202 (450)
T ss_pred             HHHHHHHHcCCCeEEEEcCC--CcEEEEEEhHHhhhcccC
Confidence            99999999999999999998  999999999999999754

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.22  E-value=5.4e-11  Score=99.17  Aligned_cols=110  Identities=11%  Similarity=0.158  Sum_probs=86.5

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.+++++.++++.|.+ +.+.++|++   +|  +++|+++.+|++.....       .           +.   . 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~--~~~G~v~~~dl~~~~~~-------~-----------~~---~-   54 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD---GN--KLVGIFTSKDIALRVVA-------Q-----------GL---D-   54 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE---CC--EEEEEEEhHHHHHHHHh-------c-----------CC---C-
Confidence            57889999999999999988 888999998   47  99999999999742100       0           00   0 


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                 ...               ..+                .      ..+..++.+|.+++++.+++..|.+
T Consensus        55 -----------~~~---------------~~v----------------~------~i~~~~~~~v~~~~~l~~~~~~~~~   86 (113)
T cd04587          55 -----------PES---------------TLV----------------E------RVMTPNPVCATSDTPVLEALHLMVQ   86 (113)
T ss_pred             -----------cCc---------------CCH----------------H------HhcCCCCeEEcCCCCHHHHHHHHHH
Confidence                       000               000                0      1246678899999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||+|++  ++++|+||..||+.
T Consensus        87 ~~~~~l~Vv~~~--~~~~Gvvs~~dl~~  112 (113)
T cd04587          87 GKFRHLPVVDKS--GQVVGLLDVTKLTH  112 (113)
T ss_pred             cCCCcccEECCC--CCEEEEEEHHHhcc
Confidence            999999999987  89999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.22  E-value=5.9e-11  Score=118.51  Aligned_cols=126  Identities=15%  Similarity=0.154  Sum_probs=101.2

Q ss_pred             CCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhc
Q 013939          208 LPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANL  283 (433)
Q Consensus       208 l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l  283 (433)
                      +..+++++  +|++  +++++.+++++.++++.+.+ +++.+||+++  + +  +++|+++.+|++...        .. 
T Consensus        64 l~~~~V~d--iMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~--~~d--~iiGiv~~kDll~~~--------~~-  128 (292)
T PRK15094         64 IADQRVRD--IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD--HIEGILMAKDLLPFM--------RS-  128 (292)
T ss_pred             cCCCEEeE--EccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecC--CCC--cEEEEEEHHHHHhHh--------hc-
Confidence            45667776  6987  79999999999999999999 8999999986  4 5  999999999997432        00 


Q ss_pred             cchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCe
Q 013939          284 SAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPL  363 (433)
Q Consensus       284 ~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  363 (433)
                                ..                 ..  .             .+      .                . ..++++
T Consensus       129 ----------~~-----------------~~--~-------------~l------~----------------~-l~r~~~  143 (292)
T PRK15094        129 ----------DA-----------------EA--F-------------SM------D----------------K-VLRQAV  143 (292)
T ss_pred             ----------cC-----------------Cc--C-------------CH------H----------------H-HcCCCc
Confidence                      00                 00  0             00      0                1 123567


Q ss_pred             EecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          364 TCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       364 t~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      ++.+++++.+++.+|.+++.|.++|||+.  |.++||||+.||+..+..+-.
T Consensus       144 ~V~e~~~l~~~L~~m~~~~~~~a~VvDe~--G~viGiVTleDIle~ivGei~  193 (292)
T PRK15094        144 VVPESKRVDRMLKEFRSQRYHMAIVIDEF--GGVSGLVTIEDILELIVGEIE  193 (292)
T ss_pred             CcCCCCcHHHHHHHHHhcCCEEEEEEeCC--CCEEEEeEHHHHHHHHhCCCc
Confidence            99999999999999999999999999997  899999999999999997643

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.22  E-value=1.3e-10  Score=95.83  Aligned_cols=104  Identities=13%  Similarity=0.174  Sum_probs=86.2

Q ss_pred             CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939          221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      ++++++.++.++.++++.|.+ +...+||+|   ++  +++|+++..||+... .       ..++.             
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~--~~~g~v~~~~l~~~~-~-------~~~~~-------------   55 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD---NG--KVVGIVSARDLLGKD-P-------DETVE-------------   55 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeE---CC--EEEEEEEHHHhhccC-c-------cccHH-------------
Confidence            467889999999999999987 778899998   46  999999999987531 0       00000             


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML  379 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~  379 (433)
                                                                              ..+...+.++.+++++.++++.|.
T Consensus        56 --------------------------------------------------------~~~~~~~~~v~~~~~l~~~~~~~~   79 (107)
T cd04610          56 --------------------------------------------------------EIMSKDLVVAVPEMDIMDAARVMF   79 (107)
T ss_pred             --------------------------------------------------------HhCCCCCeEECCCCCHHHHHHHHH
Confidence                                                                    113556889999999999999999


Q ss_pred             HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          380 SHRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      +++.+++||+|++  |+++|+|+..||++
T Consensus        80 ~~~~~~~~Vv~~~--g~~~Gvi~~~di~~  106 (107)
T cd04610          80 RTGISKLPVVDEN--NNLVGIITNTDVIR  106 (107)
T ss_pred             HhCCCeEeEECCC--CeEEEEEEHHHhhc
Confidence            9999999999987  89999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.22  E-value=9.8e-11  Score=98.28  Aligned_cols=96  Identities=22%  Similarity=0.295  Sum_probs=78.8

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcC-CCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcc
Q 013939           18 PELAEFYETETVEAAIKAIGEST-ECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPV   96 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~-I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV   96 (433)
                      +++.++++++++.+|++.|.+++ +..+||+|..             ++++|+++..||+......        ..+.++
T Consensus         1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-------------~~~~G~v~~~dl~~~~~~~--------~~~~~v   59 (114)
T cd04801           1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-------------GRYVGIISLADLRAIPTSQ--------WAQTTV   59 (114)
T ss_pred             CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-------------CcEEEEEEHHHHHHHHHhh--------ccccch
Confidence            35788999999999999998775 8999999863             7999999999998865321        124678


Q ss_pred             hhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           97 SQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        97 ~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      .++|... .+++++.+++++.+|++.|. ++.+++||.++
T Consensus        60 ~~~~~~~-~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~   98 (114)
T cd04801          60 IQVMTPA-AKLVTVLSEESLAEVLKLLEEQGLDELAVVED   98 (114)
T ss_pred             hhhhccc-ccceEECCCCcHHHHHHHHHHCCCCeeEEEcC
Confidence            8998642 23678999999999999999 78999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.21  E-value=1.3e-10  Score=96.61  Aligned_cols=108  Identities=19%  Similarity=0.174  Sum_probs=87.6

Q ss_pred             CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939          221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      ++++++.+++++.+|++.|.+ ++..+||+++   |  +++|+++..|+++.....    ..                  
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~--~~~G~v~~~~l~~~~~~~----~~------------------   53 (110)
T cd04588           1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD---G--KLVGIVTLSDIAHAIARG----LE------------------   53 (110)
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC---C--EEEEEEEHHHHHHHHhcc----cc------------------
Confidence            357889999999999999998 8999999994   6  999999999997642000    00                  


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML  379 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~  379 (433)
                                   ..                .+.                      ..+..++.++.+++++.+++++|.
T Consensus        54 -------------~~----------------~v~----------------------~~~~~~~~~v~~~~~~~~~~~~~~   82 (110)
T cd04588          54 -------------LA----------------KVK----------------------DVMTKDVITIDEDEQLYDAIRLMN   82 (110)
T ss_pred             -------------cc----------------CHH----------------------HHhcCCceEECCCCCHHHHHHHHH
Confidence                         00                000                      113568899999999999999999


Q ss_pred             HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          380 SHRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      +++.+++||+|++  |+++|+||..||++
T Consensus        83 ~~~~~~~~V~~~~--~~~~G~i~~~dl~~  109 (110)
T cd04588          83 KHNVGRLIVTDDE--GRPVGIITRTDILR  109 (110)
T ss_pred             hcCCCEEEEECCC--CCEEEEEEhHHhhc
Confidence            9999999999987  89999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.21  E-value=2e-10  Score=95.61  Aligned_cols=93  Identities=24%  Similarity=0.375  Sum_probs=79.2

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      +.+++.+++++.+|++.|.+++...+||++..             ++++|+++..|+.+++....        .+.++.+
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-------------~~~~G~v~~~~l~~~~~~~~--------~~~~v~~   60 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-------------GHLVGLLTRDDLIRALAEGG--------PDAPVRG   60 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-------------CcEEEEeeHHHHHHHHHhcC--------CCCcHHH
Confidence            45789999999999999999999999999863             78999999999998765421        1357899


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      +|...   ++.+++++++.+|++.|. ++.+++||.++
T Consensus        61 ~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~   95 (111)
T cd04639          61 VMRRD---FPTVSPSATLDAVLRLMQQGGAPAVPVVDG   95 (111)
T ss_pred             HhcCC---CcEECCCCcHHHHHHHHHhcCCceeeEEcC
Confidence            99754   899999999999999999 68899999754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.21  E-value=1.6e-10  Score=96.03  Aligned_cols=96  Identities=23%  Similarity=0.272  Sum_probs=80.4

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      +++.++++++++.+|++.|.++++..+||+|.+             ++++|+++..|+.+++.+....      -..++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------~~~~G~v~~~~l~~~~~~~~~~------~~~~v~   61 (114)
T cd04613           1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-------------GRLVGIVSLDDIREILFDPSLY------DLVVAS   61 (114)
T ss_pred             CCceeeCCCCcHHHHHHHHHhCCCcceeEECCC-------------CCEEEEEEHHHHHHHHhccccc------ccEEHH
Confidence            357889999999999999999999999999863             7899999999999876432111      026788


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      ++|...   ++++++++++.++++.|. .+.+++||.++
T Consensus        62 ~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~   97 (114)
T cd04613          62 DIMTKP---PVVVYPEDSLEDALKKFEDSDYEQLPVVDD   97 (114)
T ss_pred             HhccCC---CcEEcCCCCHHHHHHHHhhCCccEeeEEeC
Confidence            999865   899999999999999998 78889999754

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.21  E-value=1.2e-10  Score=96.64  Aligned_cols=108  Identities=19%  Similarity=0.253  Sum_probs=87.2

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      ++.++.+++++.+|++.|.+ +...+||+|+   |  +++|+++.+||.++...       .                  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~--~~~G~v~~~~l~~~~~~-------~------------------   51 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD---G--RPLGIVTERDILRLLAS-------G------------------   51 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC---C--EEEEEEeHHHHHHHHhc-------C------------------
Confidence            46789999999999999998 8889999984   7  99999999999865300       0                  


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                  .. ..            ..++                      ..+..+++++.+++++.+++..|.+
T Consensus        52 ------------~~-~~------------~~v~----------------------~~~~~~~~~~~~~~~l~~~l~~~~~   84 (111)
T cd04611          52 ------------PD-LQ------------TPVG----------------------EVMSSPLLTVPADTSLYDARQLMRE   84 (111)
T ss_pred             ------------CC-CC------------cCHH----------------------HhcCCCceEECCCCCHHHHHHHHHH
Confidence                        00 00            0000                      1245688999999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||+|++  |+++|+||..||++
T Consensus        85 ~~~~~~~Vv~~~--~~~~Gvi~~~di~~  110 (111)
T cd04611          85 HGIRHLVVVDDD--GELLGLLSQTDLLQ  110 (111)
T ss_pred             cCCeEEEEECCC--CcEEEEEEhHHhhc
Confidence            999999999987  89999999999986

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.21  E-value=1.8e-10  Score=97.60  Aligned_cols=120  Identities=16%  Similarity=0.171  Sum_probs=88.8

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.+++++.+|++.|.+ +++.+||+|+   |  +++|+++..|+.++....  .........++..          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~--~~~G~v~~~~l~~~~~~~--~~~~~~~~~~~~~----------   64 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED---N--ELVGVISDRDYLKAISPF--LGTAGETEKDLAT----------   64 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC---C--eEEEEEEHHHHHHHHHHH--hccccchHHHHHH----------
Confidence            57889999999999999998 8999999994   7  999999999998653110  0000000000000          


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                  ..               ..+                 +     ..+..+++++.+++++.+++..|.+
T Consensus        65 ------------~~---------------~~~-----------------~-----~~~~~~~~~v~~~~~l~~~~~~~~~   95 (122)
T cd04637          65 ------------LN---------------RRA-----------------H-----QIMTRDPITVSPDTPVDEASKLLLE   95 (122)
T ss_pred             ------------HH---------------hHH-----------------H-----HhhcCCCeeeCCCCcHHHHHHHHHH
Confidence                        00               000                 0     1146678999999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILVA  409 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~~  409 (433)
                      ++.+++||+|++  ++++|+||+.|++++
T Consensus        96 ~~~~~~~vv~~~--~~~~Gvit~~dll~~  122 (122)
T cd04637          96 NSISCLPVVDEN--GQLIGIITWKDLLKY  122 (122)
T ss_pred             cCCCeEeEECCC--CCEEEEEEHHHhhhC
Confidence            999999999987  899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.21  E-value=2e-10  Score=100.85  Aligned_cols=101  Identities=13%  Similarity=0.169  Sum_probs=80.8

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch-----------
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED-----------   87 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~-----------   87 (433)
                      +++++++++++.+|++.|.+++++.+||+|..             ++++|+++..|+++++........           
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-------------~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~   68 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-------------GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKA   68 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-------------CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhc
Confidence            45789999999999999999999999999863             799999999999997753210000           


Q ss_pred             ------HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           88 ------QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        88 ------~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                            .....+.+|+++|...   ++.+.+++++.+|++.|. ++.+++||.++
T Consensus        69 ~~~~~~~~~~~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~  120 (135)
T cd04621          69 GQKRYRYVKEVPLVAEDIMTEE---IITVSPNDDVVDAAKLMLEANISGLPVVDN  120 (135)
T ss_pred             ccccccccccccccHHHhcCCC---CeEECCCCCHHHHHHHHHHcCCCEEEEEeC
Confidence                  0001245899999754   889999999999999998 77889999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=1e-10  Score=97.54  Aligned_cols=110  Identities=17%  Similarity=0.213  Sum_probs=86.9

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.+++++.+|++.|.+ +...+||+|+   |  +++|++|..|++.....               .    ...+. 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~---~--~~~G~i~~~~l~~~~~~---------------~----~~~~~-   56 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN---D--RLVGIVTDRDIVVRAVA---------------E----GRDPD-   56 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC---C--EEEEEEEhHHHHHHHhh---------------c----cCCcc-
Confidence            57899999999999999988 8999999994   7  99999999998632100               0    00000 


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                   .               ..+      .                ..+...+.++.+++++.+++..|.+
T Consensus        57 -------------~---------------~~~------~----------------~~~~~~~~~v~~~~~~~~~~~~~~~   86 (113)
T cd04622          57 -------------T---------------TTV------G----------------DVMTRGVVTVTEDDDVDEAARLMRE   86 (113)
T ss_pred             -------------c---------------CCH------H----------------HhccCCccEECCCCCHHHHHHHHHH
Confidence                         0               000      0                2245678899999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||+|++  |+++|+||..|+++
T Consensus        87 ~~~~~~~V~~~~--~~~~G~it~~di~~  112 (113)
T cd04622          87 HQVRRLPVVDDD--GRLVGIVSLGDLAR  112 (113)
T ss_pred             cCCCeeeEECCC--CcEEEEEEHHHhhc
Confidence            999999999987  89999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.20  E-value=1.4e-10  Score=122.84  Aligned_cols=117  Identities=20%  Similarity=0.214  Sum_probs=98.5

Q ss_pred             hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch
Q 013939            8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED   87 (433)
Q Consensus         8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~   87 (433)
                      .+++++|.  ++++++++++++.+|++.|.+++++++||+|.+             ++++|+||..|+...  .      
T Consensus        89 VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~-------------gklvGIVT~rDL~~~--~------  145 (479)
T PRK07807         89 VKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE-------------GRPVGVVTEADCAGV--D------  145 (479)
T ss_pred             cccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEEEECCC-------------CeEEEEEeHHHHhcC--c------
Confidence            44566664  677999999999999999999999999999863             799999999998421  0      


Q ss_pred             HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccc
Q 013939           88 QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNN  166 (433)
Q Consensus        88 ~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~  166 (433)
                          ...+|+++|..+   ++++++++++.+|+++|. ++++++||+++++                             
T Consensus       146 ----~~~~V~diMt~~---~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g-----------------------------  189 (479)
T PRK07807        146 ----RFTQVRDVMSTD---LVTLPAGTDPREAFDLLEAARVKLAPVVDADG-----------------------------  189 (479)
T ss_pred             ----cCCCHHHhccCC---ceEECCCCcHHHHHHHHHhcCCCEEEEEcCCC-----------------------------
Confidence                126799999865   999999999999999999 7899999986432                             


Q ss_pred             cccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          167 LIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                       +++|+||+.||++....
T Consensus       190 -----------------~lvGIIT~~DIl~~~~~  206 (479)
T PRK07807        190 -----------------RLVGVLTRTGALRATIY  206 (479)
T ss_pred             -----------------eEEEEEEHHHHHHHhhC
Confidence                             45899999999998754

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.20  E-value=7.7e-11  Score=125.48  Aligned_cols=118  Identities=11%  Similarity=0.021  Sum_probs=95.9

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCC-CCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccC
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTS-EDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDN  295 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~-~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~  295 (433)
                      .+..+++++.+++++.+|+++|.+ +++.+||+|++. ++  +++|+||.+|++... .      ...++.         
T Consensus       101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g--kLvGIVt~~DL~~~~-~------~~~~V~---------  162 (495)
T PTZ00314        101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG--KLLGIVTSRDIDFVK-D------KSTPVS---------  162 (495)
T ss_pred             ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC--eEEEEEEHHHHhhcc-c------CCCCHH---------
Confidence            456778999999999999999999 999999999610 16  999999999997432 0      000000         


Q ss_pred             CCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCC--CCeEecCCCCHHH
Q 013939          296 VTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRS--TPLTCKITSSLAA  373 (433)
Q Consensus       296 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~it~~p~~sL~~  373 (433)
                                                                                  +.|+.  +++++++++++.+
T Consensus       163 ------------------------------------------------------------diMt~~~~lvtv~~~~sl~e  182 (495)
T PTZ00314        163 ------------------------------------------------------------EVMTPREKLVVGNTPISLEE  182 (495)
T ss_pred             ------------------------------------------------------------HhhCCcCCceEeCCCCCHHH
Confidence                                                                        11344  7899999999999


Q ss_pred             HHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          374 VMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       374 v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      ++++|.+++++++||||++  ++++|+||++||++....+.+
T Consensus       183 Al~lm~e~~i~~LPVVd~~--g~liGIIT~~DIl~~~~~p~a  222 (495)
T PTZ00314        183 ANEVLRESRKGKLPIVNDN--GELVALVSRSDLKKNRGYPNA  222 (495)
T ss_pred             HHHHHHHcCCCeEEEEcCC--CcEEEEEEehHhhhcccCchh
Confidence            9999999999999999998  999999999999999875443

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=1.6e-10  Score=95.41  Aligned_cols=78  Identities=14%  Similarity=0.285  Sum_probs=69.4

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      +++++.+++++.+|++.|.+++++.+||+|..             ++++|+++..|++...                   
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-------------~~~~Giv~~~dl~~~~-------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-------------GKLSGIITERDLIAKS-------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-------------CCEEEEEEHHHHhcCC-------------------
Confidence            57899999999999999999999999999863             7999999999997631                   


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                             .++++++++++.+|++.|. ++++++||.++
T Consensus        50 -------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~   80 (96)
T cd04614          50 -------EVVTATKRTTVSECAQKMKRNRIEQIPIING   80 (96)
T ss_pred             -------CcEEecCCCCHHHHHHHHHHhCCCeeeEECC
Confidence                   0788999999999999998 88999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.20  E-value=3.8e-10  Score=93.74  Aligned_cols=92  Identities=24%  Similarity=0.350  Sum_probs=78.4

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      ++++++++++++.+|++.|.+++...+||.|..             ++++|+++..|+++.+..+          ..++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------~~~~G~v~~~~l~~~~~~~----------~~~~~   58 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-------------GRLVGIVTSWDISKAVARD----------KKSVE   58 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-------------CcEEEEEeHHHHHHHHhhC----------ccCHH
Confidence            467899999999999999999999999999863             7999999999998865432          13588


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      ++|...   +.++.+++++.+|++.|. ++.+.+||.++
T Consensus        59 ~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   94 (110)
T cd04605          59 DIMTRN---VITATPDEPIDVAARKMERHNISALPVVDA   94 (110)
T ss_pred             HhcCCC---CeEECCCCcHHHHHHHHHHhCCCEEeEECC
Confidence            888654   889999999999999999 77889988754

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=2.4e-10  Score=96.75  Aligned_cols=101  Identities=23%  Similarity=0.302  Sum_probs=80.5

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch---HHhhcCCc
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED---QDKAMKTP   95 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~---~~~~l~~p   95 (433)
                      +++++.+++++.+|++.|.+.++..+||++..             ++++|+++..|+++++........   .......+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~   68 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-------------GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVP   68 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-------------CCEEEEEEHHHHHHHhccccccccccccccccCcC
Confidence            46889999999999999999999999999863             799999999999987653211100   00112467


Q ss_pred             chhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           96 VSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        96 V~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      +.++|..+   ++.+.+++++.++++.|. .+.+.+||.++
T Consensus        69 v~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~  106 (122)
T cd04803          69 VAEVMKTD---VLTVTPDTPLREAAEIMVENKIGCLPVVDD  106 (122)
T ss_pred             HHHhhCCC---CeEeCCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence            88898754   899999999999999999 68888998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.19  E-value=3.5e-10  Score=93.48  Aligned_cols=91  Identities=16%  Similarity=0.269  Sum_probs=78.0

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      +++.++++++++.+|++.|.++++..+||+|..             ++++|+++..|++.....           ..++.
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------~~~~G~v~~~dl~~~~~~-----------~~~v~   57 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-------------NKLLGIVSLESLEQAYKE-----------AKSLE   57 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-------------CcEEEEEEHHHHHHHhhc-----------CCcHh
Confidence            356889999999999999999999999999863             799999999999876421           25788


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      ++|...   +..+++++++.++++.|. .+.+++||.++
T Consensus        58 ~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~   93 (109)
T cd04583          58 DIMLED---VFTVQPDASLRDVLGLVLKRGPKYVPVVDE   93 (109)
T ss_pred             HhhcCC---ceEECCCCcHHHHHHHHHHcCCceeeEECC
Confidence            888754   889999999999999999 68899999764

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.19  E-value=1.5e-10  Score=123.16  Aligned_cols=113  Identities=16%  Similarity=0.155  Sum_probs=95.9

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV  296 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~  296 (433)
                      +|..+++++.+++++.+|+++|.+ +++.+||+|+  ++  +++|+||.+||+... .      ..              
T Consensus        92 im~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~--~g--~lvGiVt~~DL~~~~-~------~~--------------  146 (486)
T PRK05567         92 GVVTDPVTVTPDTTLAEALALMARYGISGVPVVDE--NG--KLVGIITNRDVRFET-D------LS--------------  146 (486)
T ss_pred             cccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc--CC--EEEEEEEHHHhhhcc-c------CC--------------
Confidence            577889999999999999999999 9999999998  78  999999999986321 0      00              


Q ss_pred             CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCC-CCCeEecCCCCHHHHH
Q 013939          297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGR-STPLTCKITSSLAAVM  375 (433)
Q Consensus       297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~it~~p~~sL~~v~  375 (433)
                                      .                 .+      .                ..|. .++++|.+++++.+++
T Consensus       147 ----------------~-----------------~V------~----------------dim~~~~~v~v~~~~sl~eal  171 (486)
T PRK05567        147 ----------------Q-----------------PV------S----------------EVMTKERLVTVPEGTTLEEAL  171 (486)
T ss_pred             ----------------C-----------------cH------H----------------HHcCCCCCEEECCCCCHHHHH
Confidence                            0                 00      0                1134 6899999999999999


Q ss_pred             HHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          376 AQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       376 ~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      .+|.+++++++||+|++  |+++|+||..||++.+..
T Consensus       172 ~~m~~~~~~~lpVVDe~--g~lvGiIT~~DLl~~~~~  206 (486)
T PRK05567        172 ELLHEHRIEKLPVVDDN--GRLKGLITVKDIEKAEEF  206 (486)
T ss_pred             HHHHHcCCCEEEEEcCC--CcEEEEEEhHHhhhhhhC
Confidence            99999999999999998  999999999999998754

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.19  E-value=4.4e-10  Score=93.54  Aligned_cols=93  Identities=22%  Similarity=0.332  Sum_probs=77.9

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      +++++++++++.+|++.|.++++.++||++.+            .++++|+++..|+++++....  .      ..++.+
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~------------~~~~~G~v~~~~l~~~~~~~~--~------~~~~~~   61 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGD------------LDNIIGVVHVKDLLRALAEGE--E------DLDLRD   61 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCC------------CceEEEEEEHHHHHHHHHcCC--C------cCCHHH
Confidence            57899999999999999999999999999863            168999999999999765321  0      146777


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      +|.    ++.++.+++++.++++.|. ++.+++||.++
T Consensus        62 ~~~----~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   95 (111)
T cd04590          62 LLR----PPLFVPESTPLDDLLEEMRKERSHMAIVVDE   95 (111)
T ss_pred             Hhc----CCeecCCCCcHHHHHHHHHhcCCcEEEEEEC
Confidence            764    3788999999999999999 78999999764

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.18  E-value=4.6e-10  Score=93.52  Aligned_cols=94  Identities=26%  Similarity=0.399  Sum_probs=80.1

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      ++.++++++++.+|++.|.++++..+||.|.+             ++++|+++..|+++++....       ..+.++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------~~~~G~v~~~~l~~~~~~~~-------~~~~~v~~   61 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-------------ERPIGIVTERDIVRAVAAGI-------DLDTPVSE   61 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-------------CCEEEEeeHHHHHHHHhccC-------CCccCHHH
Confidence            56789999999999999999999999999863             79999999999998875431       12467889


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      +|...   ++++.+++++.++++.|. ++.+.+||.++
T Consensus        62 ~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~   96 (112)
T cd04624          62 IMTRD---LVTVDPDEPVAEAAKLMRKNNIRHHLVVDK   96 (112)
T ss_pred             hccCC---CEEECCCCcHHHHHHHHHHcCccEEEEEcC
Confidence            98754   899999999999999999 68888888754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.18  E-value=3.9e-10  Score=112.61  Aligned_cols=164  Identities=14%  Similarity=0.185  Sum_probs=121.6

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      .|..++|+|+|.-..++++++.+++++++++.+.+++.+.+||++..            .++++|+|+..|++.++..+.
T Consensus        63 ~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~------------~d~iiGiv~~kDll~~~~~~~  130 (292)
T PRK15094         63 DIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED------------KDHIEGILMAKDLLPFMRSDA  130 (292)
T ss_pred             ccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC------------CCcEEEEEEHHHHHhHhhccC
Confidence            46778899999644489999999999999999999999999999853            268999999999997653211


Q ss_pred             CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939           84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS  162 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  162 (433)
                      .        ..++.++|.+    .+.+.+++++.++++.|. ++.|.++|+++.+                         
T Consensus       131 ~--------~~~l~~l~r~----~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G-------------------------  173 (292)
T PRK15094        131 E--------AFSMDKVLRQ----AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFG-------------------------  173 (292)
T ss_pred             C--------cCCHHHHcCC----CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCC-------------------------
Confidence            0        1347788864    458999999999999999 6788888876422                         


Q ss_pred             cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccC-CCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhcc
Q 013939          163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLG-ALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAP  240 (433)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~-~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~  240 (433)
                                           ..+||||.+||+..+.+.+. +........+..   ....-+.+...+++.+..+.+.
T Consensus       174 ---------------------~viGiVTleDIle~ivGei~de~d~~~~~~i~~---~~~~~~~v~G~~~l~dl~~~l~  228 (292)
T PRK15094        174 ---------------------GVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQ---LSRHTWTVRALASIEDFNEAFG  228 (292)
T ss_pred             ---------------------CEEEEeEHHHHHHHHhCCCccccccccccccEE---eCCCeEEEEeccCHHHHHHHhC
Confidence                                 35899999999999864321 211111111221   2344677888888887777764

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.18  E-value=2.2e-10  Score=96.85  Aligned_cols=118  Identities=19%  Similarity=0.139  Sum_probs=87.6

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.+++++.+|++.|.+ +...+||+|+   |  +++|+++..|++.+.....        ..++..          
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~---~--~~~G~v~~~~l~~~~~~~~--------~~~~~~----------   58 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG---G--KLVGIVTEKDIADALRSFR--------PLVRDR----------   58 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC---C--EEEEEEchHHHHHhhhhhh--------hcccch----------
Confidence            57789999999999999988 8899999994   7  9999999999986531000        000000          


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                              ++ +.....            .++                 +     ..+..++.+|.+++++.+++.+|.+
T Consensus        59 --------~~-~~~~~~------------~~~-----------------~-----~~~~~~~~~v~~~~~l~~~~~~~~~   95 (121)
T cd04633          59 --------HQ-ERRIRN------------LPV-----------------S-----DIMTRPVITIEPDTSVSDVASLMLE   95 (121)
T ss_pred             --------hh-hhhhhc------------cCH-----------------H-----HHccCCceEECCCCcHHHHHHHHHH
Confidence                    00 000000            000                 0     1245688999999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||+|+   |+++|+||..|+++
T Consensus        96 ~~~~~~~Vv~~---~~~~Gvi~~~dl~~  120 (121)
T cd04633          96 NNIGGLPVVDD---GKLVGIVTRTDILR  120 (121)
T ss_pred             cCCCcccEEEC---CEEEEEEEHHHhhc
Confidence            99999999997   79999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.18  E-value=3.3e-10  Score=94.46  Aligned_cols=94  Identities=16%  Similarity=0.267  Sum_probs=79.6

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      +++++++++++.+|++.|.+++++.+||+|..             ++++|+++..|+..+....       ...+.++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------~~~~G~v~~~dl~~~~~~~-------~~~~~~v~~   61 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-------------EKLKGVVTFTDILDLDLFE-------SFLEKKVFN   61 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-------------CCEEEEEehHHhHHHHhhc-------ccccCcHHH
Confidence            56889999999999999999999999999863             7999999999998764321       112467889


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      +|...   ++.+.+++++.+|++.|. ++.+++||.++
T Consensus        62 ~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   96 (111)
T cd04626          62 IVSQD---VFYVNEEDTIDEALDIMREKQIGRLPVVDD   96 (111)
T ss_pred             HhcCC---cEEEcCCCcHHHHHHHHHHcCCCeeeEeEC
Confidence            98754   889999999999999999 78999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.17  E-value=2.2e-10  Score=96.39  Aligned_cols=107  Identities=12%  Similarity=0.072  Sum_probs=83.0

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCC-CCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTS-EDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~-~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      +++++.+++++.+|++.|.+ ++..++|+|+.. +|  +++|+++..|++... .      ...++.             
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~--~~~G~v~~~dl~~~~-~------~~~~v~-------------   60 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG--KLLGIVTSRDIDFLT-D------SETPLS-------------   60 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC--EEEEEEEhHHhhhhh-c------cCCCHH-------------
Confidence            46789999999999999988 888999998510 36  999999999986431 0      000000             


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecC--CCCHHHHHHH
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKI--TSSLAAVMAQ  377 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p--~~sL~~v~~~  377 (433)
                                                                              ..+...+.++.+  ++++.++++.
T Consensus        61 --------------------------------------------------------~~~~~~~~~~~~~~~~~l~~~l~~   84 (114)
T cd04602          61 --------------------------------------------------------EVMTPREVLVVAPTGITLEEANEI   84 (114)
T ss_pred             --------------------------------------------------------HhcCCCceEEECCCCCCHHHHHHH
Confidence                                                                    112444555544  9999999999


Q ss_pred             HHHcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          378 MLSHRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       378 m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      |.+++.+++||||++  |+++|+||+.||++
T Consensus        85 ~~~~~~~~~pVv~~~--~~~~Gvit~~di~~  113 (114)
T cd04602          85 LRESKKGKLPIVNDD--GELVALVTRSDLKK  113 (114)
T ss_pred             HHhcCCCceeEECCC--CeEEEEEEHHHhhc
Confidence            999999999999987  89999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.17  E-value=2.1e-10  Score=95.49  Aligned_cols=108  Identities=18%  Similarity=0.226  Sum_probs=86.1

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      ++.++.++.++.+|.+.|.+ +++.+||+|+   |  +++|+++..|+......           .++            
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~---~--~~~G~v~~~~l~~~~~~-----------~~~------------   53 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD---G--RLVGIVTDRDLRNRVVA-----------EGL------------   53 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC---C--EEEEEEEhHHHHHHHhc-----------cCC------------
Confidence            57889999999999999988 8899999984   7  99999999999753200           000            


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                       .          ..               ..+      .                ..+..+++++.++++|.++++.|.+
T Consensus        54 -~----------~~---------------~~i------~----------------~~~~~~~~~v~~~~~l~~~~~~~~~   85 (111)
T cd04800          54 -D----------PD---------------TPV------S----------------EVMTAPPITIPPDATVFEALLLMLE   85 (111)
T ss_pred             -C----------cc---------------CCH------H----------------HHhCCCCeEECCCCcHHHHHHHHHH
Confidence             0          00               000      0                1245688899999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||+|+   |+++|+||..||++
T Consensus        86 ~~~~~~~Vv~~---~~~~Giit~~di~~  110 (111)
T cd04800          86 RGIHHLPVVDD---GRLVGVISATDLLR  110 (111)
T ss_pred             cCCCeeeEeEC---CEEEEEEEHHHhhc
Confidence            99999999997   79999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.17  E-value=2.7e-10  Score=98.95  Aligned_cols=101  Identities=20%  Similarity=0.302  Sum_probs=81.1

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC------------c
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC------------L   85 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~------------l   85 (433)
                      +++.++++++++.+|++.|.++++.++||+|..             ++++|+++..|+++++.....            .
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-------------~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~   68 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDD-------------GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGA   68 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-------------CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcch
Confidence            567899999999999999999999999999863             799999999999986543210            0


Q ss_pred             ch----HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeee
Q 013939           86 ED----QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPK  134 (433)
Q Consensus        86 ~~----~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~  134 (433)
                      .+    .......++.++|...   ++.+.+++++.+|++.|. ++.+++||.+
T Consensus        69 ~~~~~~~~~~~~~~v~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd  119 (135)
T cd04586          69 EELAAAFVRSHGRKVADVMTRP---VVTVGEDTPLAEVAELMEEHRIKRVPVVR  119 (135)
T ss_pred             HHHHHHHHHhcCCCHHHHhCCC---ceEeCCCCcHHHHHHHHHHcCCCccCEec
Confidence            00    0011236788999754   899999999999999999 7899999976

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.17  E-value=2.1e-10  Score=120.95  Aligned_cols=121  Identities=17%  Similarity=0.136  Sum_probs=99.8

Q ss_pred             CCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc------CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHh
Q 013939          208 LPLSSISSLGVINPNYSSIEASVPAIEATLKAPG------DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALA  281 (433)
Q Consensus       208 l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~------~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~  281 (433)
                      ....++++  +|+++++++.++.++.+|++.|.+      ++..++|+|+  ++  +++|+++.+|++... .       
T Consensus       128 ~~e~tvg~--iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~--~~--~l~GvV~l~dLl~a~-~-------  193 (449)
T TIGR00400       128 YSDDSAGR--IMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE--SK--HLKGVLSIRDLILAK-P-------  193 (449)
T ss_pred             CCcchHHH--hCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC--CC--eEEEEEEHHHHhcCC-C-------
Confidence            45567776  699999999999999999999973      3567899997  78  999999999986421 0       


Q ss_pred             hccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCC
Q 013939          282 NLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRST  361 (433)
Q Consensus       282 ~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (433)
                                       .             .                 .+                 +     ..|.++
T Consensus       194 -----------------~-------------~-----------------~v-----------------~-----~im~~~  204 (449)
T TIGR00400       194 -----------------E-------------E-----------------IL-----------------S-----SIMRSS  204 (449)
T ss_pred             -----------------C-------------C-----------------cH-----------------H-----HHhCCC
Confidence                             0             0                 00                 0     124667


Q ss_pred             CeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          362 PLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       362 ~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      ++++++++++.+|++.|.+++.+.+||||++  |+++|+||..|+++.+..+
T Consensus       205 ~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~--g~lvGiIt~~Dil~~l~~~  254 (449)
T TIGR00400       205 VFSIVGVNDQEEVARLIQKYDFLAVPVVDNE--GRLVGIVTVDDIIDVIQSE  254 (449)
T ss_pred             CeeECCCCCHHHHHHHHHHcCCCEEeEEcCC--CeEEEEEEHHHHHHHHHhh
Confidence            8899999999999999999999999999998  9999999999999999764

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.17  E-value=4.6e-10  Score=93.91  Aligned_cols=95  Identities=29%  Similarity=0.410  Sum_probs=82.4

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      ++++++.++.++.+|+.+|.++++.++||.+.              .+++|++|..|+++++.......       .++.
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~--------------~~l~Giit~~di~~~~~~~~~~~-------~~v~   65 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--------------GKLVGIITERDILRALAAGGKRL-------LPVK   65 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--------------CEEEEEEEHHHHHHHHhccCCcc-------ccHH
Confidence            77899999999999999999999999999984              48999999999999886531111       1799


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHHc--CCCeEEeeecC
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMKQ--GVRRLLVPKSV  136 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~~--gi~rl~V~~~~  136 (433)
                      ++|..+   ++++.+++++.++++.|.+  +++++||.+++
T Consensus        66 ~v~~~~---~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~  103 (117)
T COG0517          66 EVMTKP---VVTVDPDTPLEEALELMVERHKIRRLPVVDDD  103 (117)
T ss_pred             HhccCC---cEEECCCCCHHHHHHHHHHHcCcCeEEEEECC
Confidence            999864   9999999999999999995  79999998754

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.17  E-value=2.6e-10  Score=123.53  Aligned_cols=127  Identities=17%  Similarity=0.086  Sum_probs=104.6

Q ss_pred             cchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCc
Q 013939            6 IYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCL   85 (433)
Q Consensus         6 ~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l   85 (433)
                      ...+|+|+|.  ++.+++++++++.+|++.|.+++...+||+|++             ++++|+|+..|+.+.+...+. 
T Consensus       445 ~~~~V~dim~--~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-------------g~lvGiVt~~dL~~~l~~~~~-  508 (574)
T PRK01862        445 RTTQMRELIQ--PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-------------GRFRGAVALKDITSDLLDKRD-  508 (574)
T ss_pred             hhCcHHHHhc--CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-------------CeEEEEEEHHHHHHHhhcccc-
Confidence            3457888875  567899999999999999999999999999963             799999999999986643211 


Q ss_pred             chHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccc
Q 013939           86 EDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSS  164 (433)
Q Consensus        86 ~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~  164 (433)
                           .-+.++.++|..+   ++++++++++.+|++.|. ++.+++||+++++                           
T Consensus       509 -----~~~~~v~dim~~~---~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~---------------------------  553 (574)
T PRK01862        509 -----TTDKTAADYAHTP---FPLLTPDMPLGDALEHFMAFQGERLPVVESEA---------------------------  553 (574)
T ss_pred             -----cccchHHHhccCC---CeeECCCCCHHHHHHHHHhcCCCeeeeEeCCC---------------------------
Confidence                 1136789999865   899999999999999999 7899999987542                           


Q ss_pred             cccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          165 NNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                       +++.+|+||+.|+++.+.+
T Consensus       554 -----------------~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        554 -----------------SPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             -----------------CCeEEEEEEHHHHHHHHHh
Confidence                             1256899999999998854

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.17  E-value=4.4e-10  Score=93.51  Aligned_cols=95  Identities=23%  Similarity=0.325  Sum_probs=79.8

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      +++.+++++.++.+|++.|.++++..+||+|.              ++++|+++..|++.++..+. .     ..+.++.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--------------~~~~G~v~~~~l~~~~~~~~-~-----~~~~~i~   60 (111)
T cd04800           1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD--------------GRLVGIVTDRDLRNRVVAEG-L-----DPDTPVS   60 (111)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--------------CEEEEEEEhHHHHHHHhccC-C-----CccCCHH
Confidence            45788999999999999999999999999984              69999999999998665431 1     1135788


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      ++|..+   ++.++++++|.++++.|. ++.+++||.++
T Consensus        61 ~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   96 (111)
T cd04800          61 EVMTAP---PITIPPDATVFEALLLMLERGIHHLPVVDD   96 (111)
T ss_pred             HHhCCC---CeEECCCCcHHHHHHHHHHcCCCeeeEeEC
Confidence            888754   899999999999999999 78999998754

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.17  E-value=3.5e-10  Score=93.47  Aligned_cols=93  Identities=23%  Similarity=0.350  Sum_probs=75.2

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      +++++++++++.+|++.|.++++..+||++.              ++++|+++..|+.+.+.....      ..+.++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--------------~~~~G~v~~~dl~~~~~~~~~------~~~~~~~~   61 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--------------GRVVGSIDESDLLDALIEGKA------KFSLPVRE   61 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--------------CeeEEEEeHHHHHHHHhcccc------ccCcCHHH
Confidence            4688999999999999999999999999984              589999999999998654211      12467888


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHHcCCCeEEeeec
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKS  135 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~~~  135 (433)
                      +|...   ++++++++++.+++++|.+ .+.+||+++
T Consensus        62 ~~~~~---~~~v~~~~~l~~~~~~~~~-~~~~~vv~~   94 (110)
T cd04609          62 VMGEP---LPTVDPDAPIEELSELLDR-GNVAVVVDE   94 (110)
T ss_pred             HhcCC---CceeCCCCcHHHHHHHHHh-CCceeEEec
Confidence            98754   8899999999999999986 344566543

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.17  E-value=6.5e-10  Score=92.35  Aligned_cols=93  Identities=25%  Similarity=0.353  Sum_probs=78.8

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      ++++++++++++.+|++.|.++++.++||++.              ++++|+++..|++++......        ..++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~~l~~~~~~~~~--------~~~v~   58 (110)
T cd04588           1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD--------------GKLVGIVTLSDIAHAIARGLE--------LAKVK   58 (110)
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--------------CEEEEEEEHHHHHHHHhcccc--------ccCHH
Confidence            46788999999999999999999999999984              589999999999987543211        16788


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      ++|..   +++.+++++++.++++.|. .+.+.+||.++
T Consensus        59 ~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~   94 (110)
T cd04588          59 DVMTK---DVITIDEDEQLYDAIRLMNKHNVGRLIVTDD   94 (110)
T ss_pred             HHhcC---CceEECCCCCHHHHHHHHHhcCCCEEEEECC
Confidence            88874   4999999999999999999 78899998754

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.17  E-value=4.1e-10  Score=92.61  Aligned_cols=102  Identities=16%  Similarity=0.136  Sum_probs=84.7

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.+++++.++++.|.+ +...+||+|   +|  +++|+++..|+.+....        .++.              
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~~--~~~Giv~~~~l~~~~~~--------~~~~--------------   54 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE---DG--KLVGIITSRDVRRAHPN--------RLVA--------------   54 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE---CC--EEEEEEehHHhhccccc--------CCHH--------------
Confidence            56789999999999999988 788999997   47  99999999999753200        0000              


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                                                             ..+..++.++.+++++.+++++|.+
T Consensus        55 -------------------------------------------------------~~~~~~~~~v~~~~~l~~~~~~~~~   79 (105)
T cd04599          55 -------------------------------------------------------DAMTREVVTISPEASLLEAKRLMEE   79 (105)
T ss_pred             -------------------------------------------------------HHccCCCEEECCCCCHHHHHHHHHH
Confidence                                                                   1135578899999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++..++||+|+   |+++|+||..||+.
T Consensus        80 ~~~~~~~Vv~~---~~~~G~it~~~l~~  104 (105)
T cd04599          80 KKIERLPVLRE---RKLVGIITKGTIAL  104 (105)
T ss_pred             cCCCEeeEEEC---CEEEEEEEHHHhcc
Confidence            99999999997   79999999999973

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=4.9e-10  Score=93.97  Aligned_cols=94  Identities=21%  Similarity=0.320  Sum_probs=75.7

Q ss_pred             CeEEEcCCccHHHHHHHHHhcC-CCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           19 ELAEFYETETVEAAIKAIGEST-ECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~-I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      +.++++++.++.+|++.|.+++ ...+||.+.              ++++|+++..|++.++......      .+.++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~dl~~~~~~~~~~------~~~~i~   61 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK--------------GRLLGIFTERDIVRLTAIGKDL------SDLPIG   61 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC--------------CcEEEEEeHHHHHHHHhcCCCc------cccCHH
Confidence            4578999999999999999988 677787773              6899999999999876432111      136788


Q ss_pred             hccccCCCccEEeCCC--CcHHHHHHHHH-cCCCeEEeeec
Q 013939           98 QVIVPNNSLLKQVDPG--TRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~--~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      ++|...   ++++.++  +++.+|++.|. ++.+.+||.++
T Consensus        62 ~~~~~~---~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~   99 (115)
T cd04620          62 EVMTQP---VVTLQESEIQDIFTALSLFRQHQIRHLPVLDD   99 (115)
T ss_pred             HhcCCC---cEEEecccccCHHHHHHHHHHhCCceEEEEcC
Confidence            999754   8888887  79999999999 78899999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=2.9e-10  Score=94.73  Aligned_cols=109  Identities=21%  Similarity=0.248  Sum_probs=86.0

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.+++++.++++.|.+ +.+.+||+++   +  +++|+++..|++.....       .    ++    .   .   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~--~~~G~v~~~dl~~~~~~-------~----~~----~---~---   55 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN---E--KPVGIITERDLVKKVVS-------R----NL----K---P---   55 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC---C--EEEEEEEHHHHHHHHhh-------c----cC----C---c---
Confidence            57789999999999999998 8899999994   6  99999999999864200       0    00    0   0   


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                  ..  .             .+      .                ..+..++.+|.+++++.+++++|.+
T Consensus        56 ------------~~--~-------------~~------~----------------~~~~~~~~~v~~~~~l~~~~~~~~~   86 (112)
T cd04802          56 ------------RE--V-------------PV------G----------------EVMSTPLITIDPNASLNEAAKLMAK   86 (112)
T ss_pred             ------------cc--C-------------CH------H----------------HhcCCCcEEECCCCCHHHHHHHHHH
Confidence                        00  0             00      0                1145678899999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||||+   ++++|+||+.||++
T Consensus        87 ~~~~~~~Vv~~---~~~~Gvi~~~di~~  111 (112)
T cd04802          87 HGIKRLPVVDD---DELVGIVTTTDIVM  111 (112)
T ss_pred             cCCCeeEEeeC---CEEEEEEEhhhhhc
Confidence            99999999997   59999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.16  E-value=5e-10  Score=119.18  Aligned_cols=174  Identities=18%  Similarity=0.179  Sum_probs=125.2

Q ss_pred             HhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHH
Q 013939           10 VGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQD   89 (433)
Q Consensus        10 v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~   89 (433)
                      +.|++.  ++++++++++++.+|+++|.++++..+||+|..             ++++|+|+..|+....          
T Consensus        89 ~~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~-------------g~lvGiVt~~DL~~~~----------  143 (486)
T PRK05567         89 SESGVV--TDPVTVTPDTTLAEALALMARYGISGVPVVDEN-------------GKLVGIITNRDVRFET----------  143 (486)
T ss_pred             hhhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC-------------CEEEEEEEHHHhhhcc----------
Confidence            445543  678999999999999999999999999999963             7999999999996421          


Q ss_pred             hhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccc
Q 013939           90 KAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLI  168 (433)
Q Consensus        90 ~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~  168 (433)
                       ..+.++.++|..  .+++++.+++++.++++.|. ++++.+||.++.+                               
T Consensus       144 -~~~~~V~dim~~--~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g-------------------------------  189 (486)
T PRK05567        144 -DLSQPVSEVMTK--ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNG-------------------------------  189 (486)
T ss_pred             -cCCCcHHHHcCC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-------------------------------
Confidence             124689999972  24999999999999999999 7899999976532                               


Q ss_pred             cccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeE
Q 013939          169 ANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIA  247 (433)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavp  247 (433)
                                     ..+|+||..|+++++.. .....    ..-+.|  +-...+.+.++  ..++++.|.+ ++. +.
T Consensus       190 ---------------~lvGiIT~~DLl~~~~~-p~a~~----d~~g~l--~V~aai~~~~~--~~e~a~~L~~agvd-vi  244 (486)
T PRK05567        190 ---------------RLKGLITVKDIEKAEEF-PNACK----DEQGRL--RVGAAVGVGAD--NEERAEALVEAGVD-VL  244 (486)
T ss_pred             ---------------cEEEEEEhHHhhhhhhC-CCccc----ccCCCE--EEEeecccCcc--hHHHHHHHHHhCCC-EE
Confidence                           45899999999998631 11100    001111  11223333342  2788888888 766 55


Q ss_pred             EecCCCCCcceEEeecchhhhhh
Q 013939          248 VLEPTSEDQYKIIGEISASKLWK  270 (433)
Q Consensus       248 VVd~~~~g~~klvGiIS~~DL~~  270 (433)
                      ++|.+ +|  +..+.++.-+.++
T Consensus       245 vvD~a-~g--~~~~vl~~i~~i~  264 (486)
T PRK05567        245 VVDTA-HG--HSEGVLDRVREIK  264 (486)
T ss_pred             EEECC-CC--cchhHHHHHHHHH
Confidence            77752 46  7777777666554

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=5.2e-10  Score=93.21  Aligned_cols=95  Identities=16%  Similarity=0.246  Sum_probs=77.6

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      +++.++++++++.+|++.|.+++...+||.+.              ++++|+++..|+.+++... ..    .....++.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~dl~~~~~~~-~~----~~~~~~v~   61 (112)
T cd04625           1 DTIYTVAPETLLSEAVATMAEQDLGSLVVMER--------------GELVGLLTFREVLQAMAQH-GA----GVLDTTVR   61 (112)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeEEEeeC--------------CEEEEEEEHHHHHHHHHhc-CC----chhcCCHH
Confidence            35788999999999999999999888877753              7999999999999876531 00    01136799


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeee
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPK  134 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~  134 (433)
                      ++|...   +.++++++++.+|++.|. ++.+++||.+
T Consensus        62 ~~~~~~---~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~   96 (112)
T cd04625          62 AIMNPE---PIVASPDDSIDEVRRLMVERHLRYLPVLD   96 (112)
T ss_pred             HHhCCC---CeEECCCCCHHHHHHHHHHcCCCeeeEEE
Confidence            999754   889999999999999999 7899999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.16  E-value=2.5e-10  Score=119.00  Aligned_cols=125  Identities=16%  Similarity=0.146  Sum_probs=101.6

Q ss_pred             CCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhcc
Q 013939          208 LPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLS  284 (433)
Q Consensus       208 l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~  284 (433)
                      +..+++++  +|++  ++++++.++++.++++.|.+ +++++||.+++ .+  +++|+++.+|+..+. .       .  
T Consensus       188 l~~~~v~d--iMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~-~d--~ivGiv~~kDll~~~-~-------~--  252 (408)
T TIGR03520       188 FGNTDTKQ--VMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET-ID--NITGVLYIKDLLPHL-N-------K--  252 (408)
T ss_pred             cCCCEeee--eCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC-CC--ceEEEEEHHHHHhHh-c-------c--
Confidence            44566776  6996  79999999999999999999 99999999862 24  999999999997432 0       0  


Q ss_pred             chhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeE
Q 013939          285 AGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLT  364 (433)
Q Consensus       285 ~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it  364 (433)
                                                  ...               .+      .                . ..+++++
T Consensus       253 ----------------------------~~~---------------~l------~----------------~-~~~~~~~  266 (408)
T TIGR03520       253 ----------------------------KNF---------------DW------Q----------------S-LLREPYF  266 (408)
T ss_pred             ----------------------------CCC---------------CH------H----------------H-HcCCCeE
Confidence                                        000               00      0                0 1347899


Q ss_pred             ecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          365 CKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       365 ~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      +.+++++.+++.+|.+++.|..+|+|+.  |..+||||+.||+..+..+-.
T Consensus       267 Vpe~~~l~~ll~~m~~~~~~~aiVvDE~--G~~~GiVT~eDileeivgei~  315 (408)
T TIGR03520       267 VPENKKLDDLLRDFQEKKNHLAIVVDEY--GGTSGLVTLEDIIEEIVGDIS  315 (408)
T ss_pred             eCCCCcHHHHHHHHHhcCceEEEEEcCC--CCEEEEEEHHHHHHHHhCCCC
Confidence            9999999999999999999999999998  999999999999999986543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.15  E-value=2.4e-10  Score=98.88  Aligned_cols=128  Identities=15%  Similarity=0.204  Sum_probs=89.3

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHH-HHHhhccchhhhhccccCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAA-WALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~-~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      +++++.+++++.+|++.|.+ +++.+||+|+  +|  +++|+++..|+..+...... .....   .....+.+      
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~--~~--~~~G~i~~~~l~~~~~~~~~~~~~~~---~~~~~~~~------   68 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN--EG--RVVGIVSEGDLIRKIYKGKGLFYVTL---LYSVIFLD------   68 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECC--CC--CEEEEEeHHHHHHHHhccCCcccccc---cccccccc------
Confidence            57889999999999999988 8899999998  78  99999999999865311000 00000   00000000      


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML  379 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~  379 (433)
                         +         ..         .+++....+                 +     ..+..++.++.+++++.+++..|.
T Consensus        69 ---~---------~~---------~~~~~~~~v-----------------~-----~~~~~~~~~v~~~~~l~~~~~~~~  105 (132)
T cd04636          69 ---E---------SK---------IKKLLGKKV-----------------E-----EIMTKKVITVDEDTTIEDVARIMS  105 (132)
T ss_pred             ---h---------HH---------HHHHcCCCH-----------------H-----HhccCCceEECCCCcHHHHHHHHH
Confidence               0         00         000000000                 0     224667899999999999999999


Q ss_pred             HcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          380 SHRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      +++.+++||+|+   |+++|+||..|+++
T Consensus       106 ~~~~~~~~V~~~---~~~iGvit~~dl~~  131 (132)
T cd04636         106 KKNIKRLPVVDD---GKLVGIISRGDIIR  131 (132)
T ss_pred             HCCCCeeEEEEC---CEEEEEEEHHHhhc
Confidence            999999999997   79999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.15  E-value=5.5e-10  Score=115.31  Aligned_cols=191  Identities=20%  Similarity=0.184  Sum_probs=146.9

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      ++++.+.+..++-+|...|.++++.++||.|.+.            +.++.++|-.=|++|+-.....-.....+..++.
T Consensus       162 ~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~------------~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~  229 (381)
T KOG1764|consen  162 PPFVSISPESSLLDAVLLLIKSRIHRVPVIDPET------------GEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLS  229 (381)
T ss_pred             CCceeecCcHHHHHHHHHHHhCCccceeeecccc------------cceeeehhHHHHHHHHHHhhcccccHHHhhCCHH
Confidence            5569999999999999999999999999999542            6999999999999998643111112455666666


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCCCCC
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSS  176 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~  176 (433)
                      ++--.....+..+.+++++.+|++.|. +++..+||++..+                                       
T Consensus       230 dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g---------------------------------------  270 (381)
T KOG1764|consen  230 DLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENG---------------------------------------  270 (381)
T ss_pred             HhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCC---------------------------------------
Confidence            653322234888999999999999999 8899999987543                                       


Q ss_pred             CCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCccc----ccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecC
Q 013939          177 SSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISS----LGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEP  251 (433)
Q Consensus       177 ~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~----L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~  251 (433)
                             ..+|.++..|++.-..++  .+..+-...+++    ..+-...|+++.++.++.+++..|.. ++.++.|||+
T Consensus       271 -------~~v~~~s~~Dv~~l~~~~--~~~~~~~~~l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~  341 (381)
T KOG1764|consen  271 -------KKVGNYSRFDVIHLAREG--TYNNLDLSCLSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE  341 (381)
T ss_pred             -------ceecceehhhhhhhhhcC--ccCccchhHHHHHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcC
Confidence                   237889999998776542  222111110222    12233459999999999999999999 9999999998


Q ss_pred             CCCCcceEEeecchhhhhhcc
Q 013939          252 TSEDQYKIIGEISASKLWKCD  272 (433)
Q Consensus       252 ~~~g~~klvGiIS~~DL~~~~  272 (433)
                        +|  +++|+||-+|+..+.
T Consensus       342 --~~--~l~GvvSLsDil~~l  358 (381)
T KOG1764|consen  342 --DG--VLVGVISLSDILSYL  358 (381)
T ss_pred             --CC--cEEEEeeHHHHHHHH
Confidence              78  999999999998764

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.15  E-value=5.1e-10  Score=94.88  Aligned_cols=100  Identities=13%  Similarity=0.164  Sum_probs=79.9

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCc--chH--HhhcCC
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCL--EDQ--DKAMKT   94 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l--~~~--~~~l~~   94 (433)
                      +++++++++++.+|++.|.++++..+||+|.              ++++|+++..|+++.+......  ...  ......
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~   67 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--------------NELVGVISDRDYLKAISPFLGTAGETEKDLATLNR   67 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--------------CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHh
Confidence            5788999999999999999999999999984              6899999999999876431100  000  012346


Q ss_pred             cchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           95 PVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        95 pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      ++.++|..+   ++.+.+++++.++++.|. ++.+++||.++
T Consensus        68 ~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~  106 (122)
T cd04637          68 RAHQIMTRD---PITVSPDTPVDEASKLLLENSISCLPVVDE  106 (122)
T ss_pred             HHHHhhcCC---CeeeCCCCcHHHHHHHHHHcCCCeEeEECC
Confidence            788999754   999999999999999999 78888988754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=7.2e-10  Score=92.52  Aligned_cols=94  Identities=20%  Similarity=0.344  Sum_probs=78.5

Q ss_pred             eEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchhc
Q 013939           20 LAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQV   99 (433)
Q Consensus        20 lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~I   99 (433)
                      ..++.+++++.+|++.|.++++..+||+|..             ++++|+++..|+...+.+..      .....++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-------------~~~~G~v~~~dl~~~~~~~~------~~~~~~i~~~   63 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-------------KRLVGIITRYDVLSYALESE------ELKDAKVREV   63 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-------------CCEEEEEEHHHHHHhhhhhh------hhcCCcHHHh
Confidence            4788999999999999999999999999863             78999999999987544321      1123678899


Q ss_pred             cccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939          100 IVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus       100 m~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      |...   +.++.+++++.++++.|. ++.+++||.++
T Consensus        64 ~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~   97 (113)
T cd04615          64 MNSP---VITIDANDSIAKARWLMSNNNISRLPVLDD   97 (113)
T ss_pred             ccCC---ceEECCCCcHHHHHHHHHHcCCCeeeEECC
Confidence            9754   899999999999999998 77889999754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.14  E-value=3.7e-10  Score=93.65  Aligned_cols=99  Identities=15%  Similarity=0.116  Sum_probs=82.7

Q ss_pred             EEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCCC
Q 013939          224 SSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFP  302 (433)
Q Consensus       224 itv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~  302 (433)
                      +++.++.++.+|++.|.+ +++.+||+|+   |  +++|+++..|+++.. .        .++.                
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~--~~~G~v~~~~l~~~~-~--------~~~~----------------   53 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY---N--KFLGAVYLKDIENAT-Y--------GDVV----------------   53 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC---C--EEEEEEEHHHHhhhc-c--------cchh----------------
Confidence            478999999999999998 8999999994   6  999999999987532 0        0000                


Q ss_pred             CcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcC
Q 013939          303 DYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHR  382 (433)
Q Consensus       303 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~  382 (433)
                                                                           ..+..+++++.+++++.+++.+|.+++
T Consensus        54 -----------------------------------------------------~~~~~~~~~v~~~~~l~~a~~~~~~~~   80 (104)
T cd04594          54 -----------------------------------------------------DYIVRGIPYVRLTSTAEEAWEVMMKNK   80 (104)
T ss_pred             -----------------------------------------------------hhhhcCCcEEcCCCCHHHHHHHHHHcC
Confidence                                                                 113456789999999999999999999


Q ss_pred             CCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          383 ATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       383 vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      .+++||+|+   |+++|+||..||++
T Consensus        81 ~~~~~Vv~~---~~~iGvit~~dl~~  103 (104)
T cd04594          81 TRWCPVVDD---GKFKGIVTLDSILD  103 (104)
T ss_pred             cceEEEEEC---CEEEEEEEHHHhhc
Confidence            999999984   89999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.14  E-value=6.2e-10  Score=91.85  Aligned_cols=89  Identities=12%  Similarity=0.047  Sum_probs=75.3

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      ++++++++++++.+|++.|.+++...+||+|..             ++++|+++..|+++..             ..++.
T Consensus         1 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-------------g~~~Giv~~~dl~~~~-------------~~~~~   54 (106)
T cd04582           1 TEPITVRPDDPLSDALGLMDDSDLRALTVVDAD-------------GQPLGFVTRREAARAS-------------GGCCG   54 (106)
T ss_pred             CCCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-------------CCEEEEEeHHHHHHhc-------------ccchh
Confidence            356789999999999999999999999999853             7999999999998642             13477


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      ++|...   +..+.+++++.++++.|. ++++.+||.++
T Consensus        55 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~   90 (106)
T cd04582          55 DHAEPF---KVTVSVDDDLRIVLSRMFAHDMSWLPCVDE   90 (106)
T ss_pred             hhcccC---CEEECCCCCHHHHHHHHHHCCCCeeeEECC
Confidence            888653   778999999999999999 78999999754

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.13  E-value=3.6e-10  Score=94.71  Aligned_cols=101  Identities=20%  Similarity=0.228  Sum_probs=84.5

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCC-CCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTS-EDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~-~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      .+..+.+++++.++.+.|.+ +...+||++++. +|  +++|+++.+|+.+.. .       .                 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~--~~~G~v~~~dl~~~~-~-------~-----------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP--RLVGYILRSQLVVAL-K-------N-----------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC--EEEEEEeHHHHHHHH-H-------H-----------------
Confidence            47789999999999999988 789999998611 26  999999999986532 0       0                 


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML  379 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~  379 (433)
                                                                               .|..++.++.+++++.+++..|.
T Consensus        56 ---------------------------------------------------------~m~~~~~~v~~~~~l~~~~~~~~   78 (105)
T cd04591          56 ---------------------------------------------------------YIDPSPFTVSPRTSLEKVHQLFR   78 (105)
T ss_pred             ---------------------------------------------------------hccCCCceECCCCcHHHHHHHHH
Confidence                                                                     02446778999999999999999


Q ss_pred             HcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939          380 SHRATHVWVTEDESDDVLVGVVGYADILVA  409 (433)
Q Consensus       380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~  409 (433)
                      +++.+++||+++   |+++|+||+.||+++
T Consensus        79 ~~~~~~~pVv~~---~~~~Gvvt~~dl~~~  105 (105)
T cd04591          79 KLGLRHLLVVDE---GRLVGIITRKDLLKA  105 (105)
T ss_pred             HcCCCEEEEEEC---CeEEEEEEhhhhhcC
Confidence            999999999965   899999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.13  E-value=6.5e-10  Score=92.60  Aligned_cols=95  Identities=24%  Similarity=0.317  Sum_probs=79.5

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      ++.++++++++.++++.|.+.+++.+||+|.+             ++++|+++..|+.+.+.+....      -..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------~~~~G~v~~~~i~~~~~~~~~~------~~~~v~~   63 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-------------GRLVGIFTDGDLRRALEKGLDI------LTLPVAD   63 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-------------CCEEEEechHHHHHHHhccCcc------ccCCHHH
Confidence            45678999999999999999999999999863             7999999999999887543111      1257999


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      +|...   ..++.+++++.++++.|. ++.+++||.+.
T Consensus        64 ~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~   98 (114)
T cd04604          64 VMTRN---PKTIDPDALAAEALELMEENKITALPVVDD   98 (114)
T ss_pred             hhccC---CeEECCCCcHHHHHHHHHHcCCCEEEEECC
Confidence            99764   789999999999999999 78899999753

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.13  E-value=3.5e-10  Score=120.53  Aligned_cols=107  Identities=17%  Similarity=0.234  Sum_probs=85.8

Q ss_pred             hhHhhhhcCC-CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcc
Q 013939            8 HVVGDLTVGK-PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLE   86 (433)
Q Consensus         8 ~~v~DL~~~k-~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~   86 (433)
                      ++|.+++.+. ....++++++|+.+|++.|.+++++.+||+|....          +++++||||..||...  .     
T Consensus        94 ~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~----------~gkLvGIVT~~DLr~~--~-----  156 (502)
T PRK07107         94 RRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTA----------HGKLLGIVTSRDYRIS--R-----  156 (502)
T ss_pred             HHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCc----------CCEEEEEEEcHHhhcc--c-----
Confidence            3467776533 34479999999999999999999999999985210          2799999999999532  1     


Q ss_pred             hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           87 DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        87 ~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                         ...+.+|+++|+.. .+++++.+++++.+|+++|. ++++++||+++
T Consensus       157 ---~~~~~~V~dIMt~~-~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~  202 (502)
T PRK07107        157 ---MSLDTKVKDFMTPF-EKLVTANEGTTLKEANDIIWDHKLNTLPIVDK  202 (502)
T ss_pred             ---cCCCCCHHHHhCCC-CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence               12357899999852 24899999999999999999 89999999864

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.12  E-value=1.2e-09  Score=91.00  Aligned_cols=92  Identities=23%  Similarity=0.318  Sum_probs=79.4

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      +++++++.+.++.+|.+.|.+++...+||+|.              ++++|+++..|+...+...        ....++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~v~~~dl~~~~~~~--------~~~~~~~   59 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--------------GRVVGIISRRDVEKALRHG--------LGHAPVK   59 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--------------CEEEEEEEHHHHHHHHhcc--------cccCcHH
Confidence            57889999999999999999999999999985              5899999999998765321        1246899


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeee
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPK  134 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~  134 (433)
                      ++|...   ++++.+++++.++++.|. ++.+++||.+
T Consensus        60 ~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~V~~   94 (110)
T cd04595          60 DYMSTD---VVTVPPDTPLSEVQELMVEHDIGRVPVVE   94 (110)
T ss_pred             HHhcCC---CEEECCCCcHHHHHHHHHHcCCCeeEEEe
Confidence            999754   889999999999999999 7899999976

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.12  E-value=7.2e-10  Score=93.64  Aligned_cols=100  Identities=21%  Similarity=0.294  Sum_probs=79.7

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcc---hH-HhhcCC
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLE---DQ-DKAMKT   94 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~---~~-~~~l~~   94 (433)
                      +++++++++++.+|++.|.++++..+||+|.              ++++|+++..|++.++.......   .. ...-..
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~   67 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--------------GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNL   67 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--------------CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhcc
Confidence            5688999999999999999999999999984              69999999999998765321000   00 011235


Q ss_pred             cchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           95 PVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        95 pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      ++.++|..+   ++++.+++++.++++.|. .+.+++||.++
T Consensus        68 ~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~  106 (121)
T cd04633          68 PVSDIMTRP---VITIEPDTSVSDVASLMLENNIGGLPVVDD  106 (121)
T ss_pred             CHHHHccCC---ceEECCCCcHHHHHHHHHHcCCCcccEEEC
Confidence            788899754   899999999999999998 78999999765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.12  E-value=1e-09  Score=92.89  Aligned_cols=102  Identities=23%  Similarity=0.321  Sum_probs=80.1

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch--HH-hhcCC
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED--QD-KAMKT   94 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~--~~-~~l~~   94 (433)
                      ++++++++++++.+|++.|.+++..++||+|..             ++++|+++..|+++.........+  .. .....
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~   67 (122)
T cd04635           1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-------------GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASP   67 (122)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCC-------------CcEEEEEEcHHHHhhccccccccchhhhhhhccC
Confidence            357899999999999999999999999999863             799999999999875321100000  00 01246


Q ss_pred             cchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           95 PVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        95 pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      ++.++|...   ++.+++++++.++++.|. .+.+++||.++
T Consensus        68 ~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~  106 (122)
T cd04635          68 TVEKIMSTP---VYSVTPDDSIATAVELMLEHDIGRLPVVNE  106 (122)
T ss_pred             cHHHHhcCC---CeeECCCCCHHHHHHHHHHcCCCeeeEEcC
Confidence            788898754   899999999999999999 78999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.12  E-value=1.1e-09  Score=91.86  Aligned_cols=100  Identities=20%  Similarity=0.263  Sum_probs=79.4

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC-cc--hHHhh-cCC
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC-LE--DQDKA-MKT   94 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~-l~--~~~~~-l~~   94 (433)
                      ++.+++++.++.+|++.|.++++..+||+|.              ++++|+++..|++.+...... ..  +.... -+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~   67 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--------------GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKI   67 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--------------CeEEEEEeHHHHHHhhhcccccccchhhhhhhccc
Confidence            5688999999999999999999999999984              689999999999987643210 00  00001 135


Q ss_pred             cchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           95 PVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        95 pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      ++.++|.++   ++++.+++++.++++.|. ++.+++||.++
T Consensus        68 ~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~  106 (122)
T cd04585          68 KVSDIMTRD---PITVSPDASVEEAAELMLERKISGLPVVDD  106 (122)
T ss_pred             CHHHhccCC---CeEeCCCCcHHHHHHHHHHcCCCceeEECC
Confidence            788898765   899999999999999999 77888988754

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.11  E-value=5.2e-10  Score=93.23  Aligned_cols=108  Identities=21%  Similarity=0.226  Sum_probs=85.3

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.++.++.+|++.|.+ +...++|+|+   |  +++|+++..|++.+...                   +...+  
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~--~~~G~v~~~~l~~~~~~-------------------~~~~~--   55 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG---D--PRLGIVTRTDLLDAVLL-------------------DGLPS--   55 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC---C--eEEEEEEHHHHHHHHHc-------------------CCCCC--
Confidence            46789999999999999988 7888999994   6  89999999999754200                   00000  


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                   .               ..+      .                ..+..++.+|.+++++.+++..|.+
T Consensus        56 -------------~---------------~~i------~----------------~~~~~~~~~v~~~~~l~~~~~~~~~   85 (111)
T cd04589          56 -------------S---------------TPV------G----------------EIATFPLITVDPDDFLFNALLLMTR   85 (111)
T ss_pred             -------------C---------------CCH------H----------------HHhCCCcEEECCCCcHHHHHHHHHH
Confidence                         0               000      0                1245688899999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||+|+   ++++|+||..|+++
T Consensus        86 ~~~~~~~Vv~~---~~~~G~it~~dl~~  110 (111)
T cd04589          86 HRIHRVVVREG---GEVVGVLEQTDLLS  110 (111)
T ss_pred             hCccEEEEeeC---CEEEEEEEhHHhhc
Confidence            99999999986   79999999999986

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.11  E-value=8.5e-10  Score=91.80  Aligned_cols=89  Identities=26%  Similarity=0.321  Sum_probs=77.0

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      ++.++++++++.+|++.|.+++...+||+|.+             ++++|+++..|++...            .+.++++
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-------------~~~~G~v~~~~l~~~~------------~~~~v~~   57 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-------------NKVVGIVTSKDVAGKD------------PDTTIEK   57 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-------------CeEEEEecHHHHhccc------------ccccHHH
Confidence            56899999999999999999999999999863             7999999999997531            1357899


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      +|...   +.++++++++.++++.|. ++.+.+||.++
T Consensus        58 ~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   92 (108)
T cd04596          58 VMTKN---PITVNPKTSVASVAHMMIWEGIEMLPVVDD   92 (108)
T ss_pred             HhcCC---CeEECCCCCHHHHHHHHHHcCCCeeeEEcC
Confidence            99754   889999999999999999 78999999754

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.11  E-value=7.5e-10  Score=95.14  Aligned_cols=98  Identities=16%  Similarity=0.253  Sum_probs=75.3

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHH-----hhcCCCcchHHhhcC
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAF-----LAKSDCLEDQDKAMK   93 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~-----l~~~~~l~~~~~~l~   93 (433)
                      +++++++++++.+|++.|.++++..+||+|..             ++++|+++..|+...     +.+..     .....
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-------------~~~~Giv~~~dl~~~~~~~~~~~~~-----~~~~~   63 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-------------DNFIGVITAVDLLGEEPIKRIQEGG-----ISRSE   63 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-------------CcEEEEEEHHHHhhChhhHHHHHcC-----CCchh
Confidence            46889999999999999999999999999863             789999999999862     22110     01124


Q ss_pred             CcchhccccCCCccEEe----CCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           94 TPVSQVIVPNNSLLKQV----DPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        94 ~pV~~Im~~~~~~~~~v----~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      .+++++|.+. ...+.+    .+++++.++++.|. ++.+++||+++
T Consensus        64 ~~v~~im~~~-~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~  109 (126)
T cd04640          64 LTVADVMTPK-EDLKALDLEELENASVGDVVETLKASGRQHALVVDR  109 (126)
T ss_pred             eEHHHhcCch-hhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC
Confidence            6799999754 112233    37899999999999 78999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.10  E-value=5.7e-10  Score=94.09  Aligned_cols=119  Identities=16%  Similarity=0.155  Sum_probs=88.1

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      ++.++++++++.+|++.|.+ +.+.+||+|+  +|  +++|+++..|+.......     .  . .++..          
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~--~~--~~~G~v~~~~l~~~~~~~-----~--~-~~~~~----------   59 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDE--EG--RLVGIVTDRDLRDASPSP-----F--T-TLSEH----------   59 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECC--CC--cEEEEEEHHHHHHHhhhh-----c--c-cchhh----------
Confidence            46789999999999999988 8889999998  78  999999999997643100     0  0 00000          


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                             ..   .....            ..+  .                    ..+..+++++.+++++.+++..|.+
T Consensus        60 -------~~---~~~~~------------~~v--~--------------------~~~~~~~~~i~~~~~l~~~~~~~~~   95 (121)
T cd04584          60 -------EL---YLLLK------------MPV--K--------------------EIMTKDVITVHPLDTVEEAALLMRE   95 (121)
T ss_pred             -------hh---hhhcC------------cCH--H--------------------HHhhCCCeEECCCCcHHHHHHHHHH
Confidence                   00   00000            000  0                    1145678899999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILVA  409 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~~  409 (433)
                      ++.+++||+|+   ++++|+||..||+++
T Consensus        96 ~~~~~~~V~~~---~~~~Gvv~~~di~~~  121 (121)
T cd04584          96 HRIGCLPVVED---GRLVGIITETDLLRT  121 (121)
T ss_pred             cCCCeEEEeeC---CEEEEEEEHHHhhcC
Confidence            99999999987   799999999999863

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.10  E-value=1.7e-09  Score=89.57  Aligned_cols=94  Identities=26%  Similarity=0.311  Sum_probs=78.0

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      ++++++.+++++.+|++.|.++++..+||+|.              ++++|+++..|+....... ...      ..++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~dl~~~~~~~-~~~------~~~~~   59 (111)
T cd04612           1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD--------------GRLVGIVTLADIRRVPAEG-REA------TVLVG   59 (111)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--------------CeEEEEEEHHHHHHHHhcC-ccc------ccCHH
Confidence            46789999999999999999999999999984              5899999999998765321 100      13677


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      ++|..+   +..+.+++++.++++.|. .+.+++||.++
T Consensus        60 ~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~   95 (111)
T cd04612          60 DVMTRD---PVTASPDETLRDALKRMAERDIGRLPVVDD   95 (111)
T ss_pred             HhccCC---CeEECCCCCHHHHHHHHHhCCCCeeeEEcC
Confidence            888754   899999999999999999 68899999754

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.10  E-value=1.2e-09  Score=91.10  Aligned_cols=95  Identities=28%  Similarity=0.314  Sum_probs=78.5

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      +++++++++++.+|++.|.+++...+||++.              ++++|+++..|++..+... +.    ...+.++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--------------~~~~G~v~~~dl~~~~~~~-~~----~~~~~~v~~   62 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--------------NKLVGIFTSKDIALRVVAQ-GL----DPESTLVER   62 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--------------CEEEEEEEhHHHHHHHHhc-CC----CcCcCCHHH
Confidence            4678999999999999999999999999984              6899999999998765432 11    111368999


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      +|...   +.++.+++++.++++.|. ++.+++||.++
T Consensus        63 i~~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~   97 (113)
T cd04587          63 VMTPN---PVCATSDTPVLEALHLMVQGKFRHLPVVDK   97 (113)
T ss_pred             hcCCC---CeEEcCCCCHHHHHHHHHHcCCCcccEECC
Confidence            99754   889999999999999999 78889988764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.10  E-value=2e-09  Score=89.19  Aligned_cols=93  Identities=28%  Similarity=0.403  Sum_probs=79.0

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      ++.++++++++.+|++.|.+++...+||.+.              ++++|+++..|++++......       ...++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--------------~~~~G~v~~~~l~~~~~~~~~-------~~~~v~~   60 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--------------GRPLGIVTERDILRLLASGPD-------LQTPVGE   60 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--------------CEEEEEEeHHHHHHHHhcCCC-------CCcCHHH
Confidence            4678999999999999999999999999984              689999999999987654211       2477899


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      +|...   ++++.+++++.++++.|. .+.+.++|.++
T Consensus        61 ~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~   95 (111)
T cd04611          61 VMSSP---LLTVPADTSLYDARQLMREHGIRHLVVVDD   95 (111)
T ss_pred             hcCCC---ceEECCCCCHHHHHHHHHHcCCeEEEEECC
Confidence            98754   899999999999999999 78888988764

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.10  E-value=1.6e-09  Score=90.31  Aligned_cols=95  Identities=25%  Similarity=0.358  Sum_probs=77.5

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHH-hhcCCCcchHHhhcCCcc
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAF-LAKSDCLEDQDKAMKTPV   96 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~-l~~~~~l~~~~~~l~~pV   96 (433)
                      ++++++++++++.+|++.|.+++...+||+|.              ++++|+++..|++.. +......      ...++
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~i~~~~l~~~~~~~~~~~------~~~~~   60 (113)
T cd04622           1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN--------------DRLVGIVTDRDIVVRAVAEGRDP------DTTTV   60 (113)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--------------CEEEEEEEhHHHHHHHhhccCCc------ccCCH
Confidence            46789999999999999999999999999984              699999999999743 3221111      12358


Q ss_pred             hhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           97 SQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        97 ~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      .++|...   +.++.+++++.++++.|. .+.+++||.++
T Consensus        61 ~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~   97 (113)
T cd04622          61 GDVMTRG---VVTVTEDDDVDEAARLMREHQVRRLPVVDD   97 (113)
T ss_pred             HHhccCC---ccEECCCCCHHHHHHHHHHcCCCeeeEECC
Confidence            9999754   889999999999999999 78899998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.09  E-value=1.3e-09  Score=115.40  Aligned_cols=116  Identities=17%  Similarity=0.155  Sum_probs=96.7

Q ss_pred             hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch
Q 013939            8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED   87 (433)
Q Consensus         8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~   87 (433)
                      .++.+++.  ++++++.+++++.+|++.|.+++++.+||+|.              ++++|+||.+|+...   +     
T Consensus        88 VKv~eim~--~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--------------gklvGIVT~rDL~~~---~-----  143 (475)
T TIGR01303        88 VKSRDLVL--DTPITLAPHDTVSDAMALIHKRAHGAAVVILE--------------DRPVGLVTDSDLLGV---D-----  143 (475)
T ss_pred             cchhhccc--cCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--------------CEEEEEEEHHHhhcC---C-----
Confidence            34556654  56799999999999999999999999999883              689999999998321   1     


Q ss_pred             HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccc
Q 013939           88 QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNN  166 (433)
Q Consensus        88 ~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~  166 (433)
                          ...+|+++|..+   ++++++++++.+|+++|. ++++++||+++++                             
T Consensus       144 ----~~~~V~dIMt~~---litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g-----------------------------  187 (475)
T TIGR01303       144 ----RFTQVRDIMSTD---LVTAPADTEPRKAFDLLEHAPRDVAPLVDADG-----------------------------  187 (475)
T ss_pred             ----CCCCHHHHccCC---ceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCC-----------------------------
Confidence                136899999865   999999999999999999 7899999986432                             


Q ss_pred             cccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          167 LIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                       .++|+||+.||++....
T Consensus       188 -----------------~LvGIIT~~DLl~~~~~  204 (475)
T TIGR01303       188 -----------------TLAGILTRTGALRATIY  204 (475)
T ss_pred             -----------------eEEEEEEHHHHHHHHhC
Confidence                             45899999999998754

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.09  E-value=2.2e-09  Score=89.45  Aligned_cols=96  Identities=25%  Similarity=0.363  Sum_probs=79.5

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      ++++++++++++.+|++.|.+++...+||+|.              ++++|+++..|++.++.....     ...+.++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~dl~~~~~~~~~-----~~~~~~~~   61 (112)
T cd04802           1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN--------------EKPVGIITERDLVKKVVSRNL-----KPREVPVG   61 (112)
T ss_pred             CCcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--------------CEEEEEEEHHHHHHHHhhccC-----CcccCCHH
Confidence            35788999999999999999999999999984              599999999999987653211     01235788


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      ++|...   +..+.+++++.++++.|. .+.+.+||+++
T Consensus        62 ~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   97 (112)
T cd04802          62 EVMSTP---LITIDPNASLNEAAKLMAKHGIKRLPVVDD   97 (112)
T ss_pred             HhcCCC---cEEECCCCCHHHHHHHHHHcCCCeeEEeeC
Confidence            999754   889999999999999999 78888998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.09  E-value=1.4e-09  Score=91.44  Aligned_cols=93  Identities=24%  Similarity=0.336  Sum_probs=74.3

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      +++++++++++.+|++.|.++++..+||+|....          +++++|+++..|++..  ..         -+.++++
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~----------~~~~~G~v~~~dl~~~--~~---------~~~~v~~   61 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKS----------GGKLLGIVTSRDIDFL--TD---------SETPLSE   61 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCc----------CCEEEEEEEhHHhhhh--hc---------cCCCHHH
Confidence            4688999999999999999999999999985200          2799999999998642  11         1357889


Q ss_pred             ccccCCCccEEe--CCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           99 VIVPNNSLLKQV--DPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        99 Im~~~~~~~~~v--~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      +|...   ..++  ++++++.++++.|. ++.+++||+++
T Consensus        62 ~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~   98 (114)
T cd04602          62 VMTPR---EVLVVAPTGITLEEANEILRESKKGKLPIVND   98 (114)
T ss_pred             hcCCC---ceEEECCCCCCHHHHHHHHHhcCCCceeEECC
Confidence            99754   5555  44999999999999 78999999754

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.09  E-value=9e-10  Score=89.88  Aligned_cols=110  Identities=21%  Similarity=0.247  Sum_probs=88.3

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.+++++.++++.|.+ +...+||+++  ++  +++|+++.+|+......       .     ..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~--~~~G~v~~~~l~~~~~~-------~-----~~-----------   54 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD--DG--RLVGIVTERDLLRALAE-------G-----GL-----------   54 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECC--CC--CEEEEEeHHHHHHHHHh-------c-----cC-----------
Confidence            46789999999999999998 8899999997  77  99999999999764200       0     00           


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                  ....              .+  .                    ..+..+++++.+++++.++++.|.+
T Consensus        55 ------------~~~~--------------~~--~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~   86 (113)
T cd02205          55 ------------DPLV--------------TV--G--------------------DVMTRDVVTVSPDTSLEEAAELMLE   86 (113)
T ss_pred             ------------Cccc--------------cH--H--------------------HHhcCCceecCCCcCHHHHHHHHHH
Confidence                        0000              00  0                    1145678899999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||+|++  ++++|+++..|+++
T Consensus        87 ~~~~~~~V~~~~--~~~~G~i~~~dl~~  112 (113)
T cd02205          87 HGIRRLPVVDDE--GRLVGIVTRSDILR  112 (113)
T ss_pred             cCCCEEEEEcCC--CcEEEEEEHHHhhc
Confidence            999999999998  99999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.08  E-value=4.1e-10  Score=118.75  Aligned_cols=171  Identities=12%  Similarity=0.056  Sum_probs=132.8

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHh-----cCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHH
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGE-----STECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAF   78 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e-----~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~   78 (433)
                      .|...+++++|.  ++++++++++|+.+|++.|.+     +++..+||+|..             ++++|+++.+|++..
T Consensus       127 ~~~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~-------------~~l~GvV~l~dLl~a  191 (449)
T TIGR00400       127 SYSDDSAGRIMT--IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES-------------KHLKGVLSIRDLILA  191 (449)
T ss_pred             CCCcchHHHhCc--CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC-------------CeEEEEEEHHHHhcC
Confidence            466788999995  789999999999999999986     567889998863             799999999999742


Q ss_pred             hhcCCCcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccc
Q 013939           79 LAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNM  157 (433)
Q Consensus        79 l~~~~~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~  157 (433)
                        .          -+.+|+++|.+.   ++++.+++++.+|++.|. ++.+.+||+++.+                    
T Consensus       192 --~----------~~~~v~~im~~~---~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g--------------------  236 (449)
T TIGR00400       192 --K----------PEEILSSIMRSS---VFSIVGVNDQEEVARLIQKYDFLAVPVVDNEG--------------------  236 (449)
T ss_pred             --C----------CCCcHHHHhCCC---CeeECCCCCHHHHHHHHHHcCCCEEeEEcCCC--------------------
Confidence              1          135799999865   889999999999999999 6788999986532                    


Q ss_pred             cccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHH
Q 013939          158 DASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATL  237 (433)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~  237 (433)
                                                +.+|+||..|+++.+.+...          +  ++|+...++..+++.+.+++.
T Consensus       237 --------------------------~lvGiIt~~Dil~~l~~~~~----------e--d~~~~~gv~~~~~~~l~~~~~  278 (449)
T TIGR00400       237 --------------------------RLVGIVTVDDIIDVIQSEAT----------E--DFYMIAAVKPLDDSYFDTSIL  278 (449)
T ss_pred             --------------------------eEEEEEEHHHHHHHHHhhhH----------H--HHHHhcCCCCCcchhhhchHH
Confidence                                      46899999999999865211          1  245544555556777888888


Q ss_pred             hccc-CCCeeEEecCCCCCcceEEeecchhhhhhc
Q 013939          238 KAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKC  271 (433)
Q Consensus       238 ~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~  271 (433)
                      .|.+ ++.-++|.-        +.|++| ..+...
T Consensus       279 ~~~~~R~~wL~v~~--------~~~~~t-~~ii~~  304 (449)
T TIGR00400       279 VMAKNRIIWLLVLL--------VSSTFT-ATIISN  304 (449)
T ss_pred             HHHHhccchHHHHH--------HHHHHH-HHHHHH
Confidence            8888 777676654        357777 666654

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.07  E-value=1.8e-09  Score=88.73  Aligned_cols=88  Identities=20%  Similarity=0.346  Sum_probs=75.9

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      +++++++++++.+|++.|.++++..+||+|.              ++++|+++..|+....            .+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~Giv~~~~l~~~~------------~~~~~~~   55 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED--------------GKLVGIITSRDVRRAH------------PNRLVAD   55 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC--------------CEEEEEEehHHhhccc------------ccCCHHH
Confidence            5678999999999999999999999999983              6999999999997631            1256888


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      +|...   ++++++++++.++++.|. ++..++||.++
T Consensus        56 ~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   90 (105)
T cd04599          56 AMTRE---VVTISPEASLLEAKRLMEEKKIERLPVLRE   90 (105)
T ss_pred             HccCC---CEEECCCCCHHHHHHHHHHcCCCEeeEEEC
Confidence            88754   899999999999999999 78999999764

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.05  E-value=2e-09  Score=95.00  Aligned_cols=132  Identities=22%  Similarity=0.202  Sum_probs=88.8

Q ss_pred             CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHH---------HHhhccchhhhh
Q 013939          221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAW---------ALANLSAGQFVM  290 (433)
Q Consensus       221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~---------~~~~l~~~~f~~  290 (433)
                      ++++++.+++++.++++.|.+ +++++||+|+   |  +++|+++..|+++........         .....++.+|+.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~--~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (143)
T cd04634           1 KNPITCNADDTISDAARLLRENKISGAPVLDG---G--KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFIN   75 (143)
T ss_pred             CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC---C--eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheee
Confidence            357899999999999999998 8999999994   7  999999999997643100000         000000000100


Q ss_pred             ccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCC
Q 013939          291 GVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSS  370 (433)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~s  370 (433)
                      +-.            ......  .            .....+                      ...+..++.+|.++++
T Consensus        76 ~~~------------~~~~~~--~------------~~~~~v----------------------~~~~~~~~~~v~~~~~  107 (143)
T cd04634          76 WEE------------TKRALT--D------------AGKMKV----------------------RDIMTKKVITISPDAS  107 (143)
T ss_pred             hHH------------HHHHHH--H------------HhcCCH----------------------HHHcCCCCeEECCCCc
Confidence            000            000000  0            000000                      0224668999999999


Q ss_pred             HHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          371 LAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       371 L~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      +.+++..|.+++.+++||+|+   ++++|+||..|+++
T Consensus       108 l~~a~~~~~~~~~~~~~Vv~~---~~~~Gvvt~~dl~~  142 (143)
T cd04634         108 IEDAAELMVRHKIKRLPVVED---GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHHHHHcCCCEEEEEEC---CEEEEEEEHHHhhc
Confidence            999999999999999999997   79999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.05  E-value=1.7e-09  Score=113.69  Aligned_cols=97  Identities=23%  Similarity=0.304  Sum_probs=81.7

Q ss_pred             ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC
Q 013939            5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC   84 (433)
Q Consensus         5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~   84 (433)
                      +...+++|+|.  ++++++++++++.+|++.|.++++.++||+|.+             ++++|+|+..|+++++.....
T Consensus       332 l~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~-------------~~~~Givt~~dl~~~~~~~~~  396 (454)
T TIGR01137       332 LKNATVKDLHL--PAPVTVHPTETVGDAIEILREYGFDQLPVVTEA-------------GKVLGSVTLRELLSALFAGKA  396 (454)
T ss_pred             hccCCHHHhCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CeEEEEEEHHHHHHHHhccCC
Confidence            56678899885  678999999999999999999999999999863             799999999999987654211


Q ss_pred             cchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHHc
Q 013939           85 LEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQ  125 (433)
Q Consensus        85 l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~~  125 (433)
                            ..+.+|.++|...   ++++++++++.++++.|.+
T Consensus       397 ------~~~~~v~~im~~~---~~~v~~~~~l~~a~~~~~~  428 (454)
T TIGR01137       397 ------NPDDAVSKVMSKK---FIQIGEGEKLSDLSKFLEK  428 (454)
T ss_pred             ------CcCCCHHHhcCCC---CeEECCcCcHHHHHHHHHH
Confidence                  1235899999754   8899999999999999974

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.05  E-value=2.7e-09  Score=88.31  Aligned_cols=103  Identities=18%  Similarity=0.212  Sum_probs=85.3

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      ++.++.++.++.++++.|.+ +++.+||+++  ++  +++|+++..|+.... .                          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~--~~~g~v~~~~l~~~~-~--------------------------   50 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK--SG--ELVGIITRKDLLRNP-E--------------------------   50 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC--CC--cEEEEEEHHHHHhcc-c--------------------------
Confidence            47889999999999999988 8899999997  67  999999999986421 0                          


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                  ..                .+      .                ..+..++.++.+++++.+++.+|.+
T Consensus        51 ------------~~----------------~~------~----------------~~~~~~~~~v~~~~~l~~~~~~~~~   80 (106)
T cd04638          51 ------------EE----------------QL------A----------------LLMTRDPPTVSPDDDVKEAAKLMVE   80 (106)
T ss_pred             ------------cc----------------hH------H----------------HHhcCCCceECCCCCHHHHHHHHHH
Confidence                        00                00      0                1135578889999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      ++.+++||+|+   |+++|+||..|+++
T Consensus        81 ~~~~~~~Vvd~---~~~~G~it~~d~~~  105 (106)
T cd04638          81 NNIRRVPVVDD---GKLVGIVTVADIVR  105 (106)
T ss_pred             cCCCEEEEEEC---CEEEEEEEHHHhhc
Confidence            99999999996   79999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.05  E-value=1.7e-09  Score=115.49  Aligned_cols=114  Identities=16%  Similarity=0.104  Sum_probs=95.6

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      ++++++++++|+.+|+++|.+++++.+||+|....          +++++|+||..||... .          ..++||+
T Consensus       108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~----------~GklvGIVT~~DL~~v-~----------~~~~~V~  166 (505)
T PLN02274        108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTM----------GSKLLGYVTKRDWDFV-N----------DRETKLS  166 (505)
T ss_pred             CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCc----------CCeEEEEEEHHHHhhc-c----------ccCCcHH
Confidence            67899999999999999999999999999985310          2699999999999532 1          1257899


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCCCCC
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSS  176 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~  176 (433)
                      ++|... .+++++.+++++.+|++.|. ++++++||+++++                                       
T Consensus       167 eIMt~~-~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g---------------------------------------  206 (505)
T PLN02274        167 EVMTSD-DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDG---------------------------------------  206 (505)
T ss_pred             HHhccC-CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC---------------------------------------
Confidence            999753 34889999999999999999 7899999986432                                       


Q ss_pred             CCcCCCCCeEEEeeHHHHHHHHH
Q 013939          177 SSTTSVRDKFCCLSREDVIRFLI  199 (433)
Q Consensus       177 ~~~~~~~~~~~iiTq~Dvi~~l~  199 (433)
                             +++|+||+.|+++++.
T Consensus       207 -------~LvGvITr~DIlk~~~  222 (505)
T PLN02274        207 -------ELVDLVTRTDVKRVKG  222 (505)
T ss_pred             -------eEEEEEEHHHHHHHhh
Confidence                   4689999999999884

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.03  E-value=3.6e-09  Score=86.27  Aligned_cols=95  Identities=29%  Similarity=0.438  Sum_probs=77.4

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      +++++++++++.++++.|.+++...+||++..             ++++|+++..|++.++.......      ...+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------~~~~G~v~~~~l~~~~~~~~~~~------~~~~~~   62 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-------------GRLVGIVTERDLLRALAEGGLDP------LVTVGD   62 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCC-------------CCEEEEEeHHHHHHHHHhccCCc------cccHHH
Confidence            46889999999999999999999999999863             79999999999999875421100      112667


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      +|...   ++.+.+++++.+++..|. .+.+.++|.++
T Consensus        63 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~   97 (113)
T cd02205          63 VMTRD---VVTVSPDTSLEEAAELMLEHGIRRLPVVDD   97 (113)
T ss_pred             HhcCC---ceecCCCcCHHHHHHHHHHcCCCEEEEEcC
Confidence            77654   888999999999999999 67888988754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.02  E-value=2.1e-09  Score=88.87  Aligned_cols=91  Identities=26%  Similarity=0.393  Sum_probs=74.5

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      ++.+++++++++.+|++.|.+++..++||+|..             ++++|+++..|++...           ..+.++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------~~~~G~v~~~~l~~~~-----------~~~~~v~   57 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDD-------------GKLVGIVTNRDLRFET-----------DLDKPVS   57 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-------------CEEEEEEEhhHeeecc-----------cCCCCHH
Confidence            456889999999999999999999999999863             7999999999996421           1246788


Q ss_pred             hccccCCCccEEeCC-CCcHHHHHHHHH-cCCCeEEeeec
Q 013939           98 QVIVPNNSLLKQVDP-GTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~-~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      ++|...   +..+.+ ++++.++++.|. .+.+++||.++
T Consensus        58 ~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~   94 (110)
T cd04601          58 EVMTPE---NLLTTVEGTSLEEALELLHEHKIEKLPVVDD   94 (110)
T ss_pred             HhcccC---ceEEecCCCCHHHHHHHHHHhCCCeeeEEcC
Confidence            998643   565666 999999999999 78888988754

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.02  E-value=8.8e-10  Score=107.54  Aligned_cols=107  Identities=14%  Similarity=0.216  Sum_probs=87.4

Q ss_pred             CcCCC-eEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccC
Q 013939          218 VINPN-YSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDN  295 (433)
Q Consensus       218 im~~~-vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~  295 (433)
                      +|.++ ++++.+++++.+|++.|.+ ++..+||+|+  +|  +++|+++..|+++..        ..           +.
T Consensus       160 im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~--~g--~~~Givt~~dl~~~~--------~~-----------~~  216 (268)
T TIGR00393       160 LMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE--NN--QLVGVFTDGDLRRAL--------LG-----------GG  216 (268)
T ss_pred             HhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC--CC--CEEEEEEcHHHHHHH--------hc-----------CC
Confidence            68888 9999999999999999988 8999999998  78  999999999997642        00           00


Q ss_pred             CCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHH
Q 013939          296 VTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVM  375 (433)
Q Consensus       296 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~  375 (433)
                       .+               .               ..+      +                ..+..++.+|.+++++.+|+
T Consensus       217 -~~---------------~---------------~~v------~----------------~im~~~~~~v~~~~~l~~a~  243 (268)
T TIGR00393       217 -SL---------------K---------------SEV------R----------------DFMTLGPKTFKLDALLLEAL  243 (268)
T ss_pred             -cc---------------c---------------CcH------H----------------HhCCCCCeEECCCCcHHHHH
Confidence             00               0               000      0                22567889999999999999


Q ss_pred             HHHHHcCCCEEEEEeCCCCCeEEEEEe
Q 013939          376 AQMLSHRATHVWVTEDESDDVLVGVVG  402 (433)
Q Consensus       376 ~~m~~~~vhrl~VVD~~~~~~lvGIVs  402 (433)
                      .+|.+++++++||+|++  |+++|+|+
T Consensus       244 ~~m~~~~~~~lpVvd~~--g~l~GvI~  268 (268)
T TIGR00393       244 EFLERRKITSLVVVDDH--NKVLGVLH  268 (268)
T ss_pred             HHHHHcCCcEEEEECCC--CeEEEEEC
Confidence            99999999999999987  89999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.02  E-value=2.2e-09  Score=94.72  Aligned_cols=107  Identities=26%  Similarity=0.279  Sum_probs=81.1

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH--Hhhc---
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ--DKAM---   92 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~--~~~l---   92 (433)
                      ++++++++++++.+|++.|.++++.++||+|+.             ++++|++|..|+++++.........  ...+   
T Consensus         1 ~~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-------------g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~   67 (133)
T cd04592           1 TKYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-------------DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTN   67 (133)
T ss_pred             CCceEECCCCCHHHHHHHHHHcCCCEEEEECCC-------------CeEEEEEEHHHHHHHHhhccccccccchhhcccc
Confidence            357899999999999999999999999999964             7999999999999988643111100  0001   


Q ss_pred             CCcchhccccC------CCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCc
Q 013939           93 KTPVSQVIVPN------NSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVV  137 (433)
Q Consensus        93 ~~pV~~Im~~~------~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~  137 (433)
                      ...+.++|...      ..+++++.+++++.+|++.|. ++++++||.+++.
T Consensus        68 ~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~  119 (133)
T cd04592          68 TCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV  119 (133)
T ss_pred             cccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence            12344555310      134899999999999999999 7899999987654

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.01  E-value=6e-09  Score=87.79  Aligned_cols=101  Identities=20%  Similarity=0.289  Sum_probs=79.4

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHH---hhcCCc
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQD---KAMKTP   95 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~---~~l~~p   95 (433)
                      ++.++++++++.+|++.|.+++...+||+|.+             ++++|+++..|++.............   ..-..+
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~   68 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-------------GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMP   68 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-------------CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcC
Confidence            56889999999999999999999999999963             79999999999987653210000000   112367


Q ss_pred             chhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           96 VSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        96 V~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      +.++|...   ++++++++++.++++.|. .+.+.+||.++
T Consensus        69 v~~~~~~~---~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~  106 (121)
T cd04584          69 VKEIMTKD---VITVHPLDTVEEAALLMREHRIGCLPVVED  106 (121)
T ss_pred             HHHHhhCC---CeEECCCCcHHHHHHHHHHcCCCeEEEeeC
Confidence            88999754   899999999999999998 67888988754

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.01  E-value=1.3e-09  Score=109.21  Aligned_cols=112  Identities=15%  Similarity=0.212  Sum_probs=94.8

Q ss_pred             CcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhcccc
Q 013939          218 VIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVED  294 (433)
Q Consensus       218 im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~  294 (433)
                      +|+  .+...+..++++.+-.++-.+ ++++.||||.  ..  +++|++|.+|+......                    
T Consensus       193 i~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~--~~--kvvGvVt~rDv~~~~~~--------------------  248 (432)
T COG4109         193 IMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR--SM--KVVGVVTMRDVLDKKPS--------------------  248 (432)
T ss_pred             hccccccceeccccccHHHHHHHHHHcCCCccceecc--cc--eEEEEEEehhhhcCCCC--------------------
Confidence            566  357778888999988888888 9999999998  67  99999999998754300                    


Q ss_pred             CCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHH
Q 013939          295 NVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAV  374 (433)
Q Consensus       295 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v  374 (433)
                                        .                 ++      +                -.|++.|+|+++.+|+..+
T Consensus       249 ------------------t-----------------~i------e----------------KVMtknp~tv~~~tsVAsv  271 (432)
T COG4109         249 ------------------T-----------------TI------E----------------KVMTKNPITVRAKTSVASV  271 (432)
T ss_pred             ------------------c-----------------cH------H----------------HHhccCCeeecccchHHHH
Confidence                              0                 01      0                1279999999999999999


Q ss_pred             HHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          375 MAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       375 ~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      .++|+-.++.-+||||++  .+++||||+.|+|+++-.
T Consensus       272 aq~MiwE~iem~PVv~~n--~~llGiitR~dvlk~lq~  307 (432)
T COG4109         272 AQMMIWEGIEMLPVVDSN--NTLLGIITRQDVLKSLQM  307 (432)
T ss_pred             HHHHHhccceeeeEEcCC--ceEEEEEEHHHHHHHHHH
Confidence            999999999999999998  999999999999999865

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.01  E-value=1.2e-09  Score=114.71  Aligned_cols=121  Identities=12%  Similarity=0.141  Sum_probs=92.4

Q ss_pred             CCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccch
Q 013939          208 LPLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAG  286 (433)
Q Consensus       208 l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~  286 (433)
                      +...++++  +|.+++.++.+++++.+|++.|.+ +++.+||+|+  +|  +++|+||.+|+++....            
T Consensus       332 l~~~~v~~--im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~--~~--~~~Givt~~dl~~~~~~------------  393 (454)
T TIGR01137       332 LKNATVKD--LHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE--AG--KVLGSVTLRELLSALFA------------  393 (454)
T ss_pred             hccCCHHH--hCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC--CC--eEEEEEEHHHHHHHHhc------------
Confidence            33445555  688999999999999999999988 8899999997  78  99999999999764200            


Q ss_pred             hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939          287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK  366 (433)
Q Consensus       287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~  366 (433)
                             +.                 ...+             ..+      .                ..|..++.++.
T Consensus       394 -------~~-----------------~~~~-------------~~v------~----------------~im~~~~~~v~  414 (454)
T TIGR01137       394 -------GK-----------------ANPD-------------DAV------S----------------KVMSKKFIQIG  414 (454)
T ss_pred             -------cC-----------------CCcC-------------CCH------H----------------HhcCCCCeEEC
Confidence                   00                 0000             000      0                22466788999


Q ss_pred             CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHH
Q 013939          367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAV  410 (433)
Q Consensus       367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i  410 (433)
                      +++++.+++.+|.+++   .+||+++  ++++||||+.||+++|
T Consensus       415 ~~~~l~~a~~~~~~~~---~~vV~~~--g~liGvvt~~dll~~l  453 (454)
T TIGR01137       415 EGEKLSDLSKFLEKNS---SAIVTEE--GKPIGVVTKIDLLSFL  453 (454)
T ss_pred             CcCcHHHHHHHHHHCC---eeEEEEC--CEEEEEEEHHHHHHhh
Confidence            9999999999998764   4666666  8999999999999986

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.00  E-value=3.8e-09  Score=88.96  Aligned_cols=112  Identities=13%  Similarity=0.183  Sum_probs=84.8

Q ss_pred             CeEEEcCCCcHHHHHHhccc-C-CCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-D-PSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR  299 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~-isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~  299 (433)
                      ++.++.+++++.+|++.|.+ + +..+||+|+   |  +++|+++..|+..+...  .+.      .++..         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~---~--~~~G~v~~~~l~~~~~~--~~~------~~~~~---------   59 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD---G--RPVGLIMREALMELLST--PYG------RALYG---------   59 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC---C--eeEEEEEHHHHHHHHhc--hhh------HHHHc---------
Confidence            46788999999999999987 6 889999994   6  99999999999764310  000      00000         


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939          300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML  379 (433)
Q Consensus       300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~  379 (433)
                                   ..                .+                 +     ..+..++++|.+++++.+++..|.
T Consensus        60 -------------~~----------------~v-----------------~-----~~~~~~~~~v~~~~~~~~~~~~~~   88 (119)
T cd04598          60 -------------KK----------------PV-----------------S-----EVMDPDPLIVEADTPLEEVSRLAT   88 (119)
T ss_pred             -------------CC----------------cH-----------------H-----HhcCCCcEEecCCCCHHHHHHHHH
Confidence                         00                00                 0     225678999999999999999999


Q ss_pred             HcCCCEE---EEEeCCCCCeEEEEEeHHHHHH
Q 013939          380 SHRATHV---WVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       380 ~~~vhrl---~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      +++.+++   +||+++  |+++|+||..|+++
T Consensus        89 ~~~~~~~~~~~vv~~~--~~~~Gvvs~~di~~  118 (119)
T cd04598          89 GRDSQNLYDGFIVTEE--GRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcccccccEEEeeC--CeEEEEEEHHHHhc
Confidence            9987544   688887  99999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.99  E-value=2.9e-09  Score=88.70  Aligned_cols=85  Identities=19%  Similarity=0.226  Sum_probs=71.2

Q ss_pred             EcCCccHHHHHHHHHhcC-----CCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           23 FYETETVEAAIKAIGEST-----ECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        23 v~~~~tV~eAl~~L~e~~-----I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      +++++++.+|++.|.+++     +..+||+|.+             ++++|+|+..|++..   .         .+.++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-------------~~~~G~v~~~~l~~~---~---------~~~~v~   56 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-------------GRLLGVVSLRDLLLA---D---------PDTPVS   56 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCC-------------CCEEEEEEHHHHhcC---C---------CcchHH
Confidence            578999999999999888     5789999863             789999999999752   1         135788


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      ++|...   ++++.+++++.++++.|. ++.+.+||.++
T Consensus        57 ~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~   92 (109)
T cd04606          57 DIMDTD---VISVSADDDQEEVARLFEKYDLLALPVVDE   92 (109)
T ss_pred             HHhCCC---CeEEcCCCCHHHHHHHHHHcCCceeeeECC
Confidence            888754   899999999999999999 78888988754

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.99  E-value=5.9e-09  Score=85.93  Aligned_cols=89  Identities=25%  Similarity=0.387  Sum_probs=75.6

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      +++++++.+.++.+|++.|.+++...+||+|.              ++++|+++..|++..   .         .+.+++
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--------------~~~~g~v~~~~l~~~---~---------~~~~~~   55 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--------------GKVVGIVSARDLLGK---D---------PDETVE   55 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--------------CEEEEEEEHHHhhcc---C---------ccccHH
Confidence            56789999999999999999999999999984              689999999999752   1         135688


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      ++|...   ++.+.+++++.++++.|. ++.+++||.++
T Consensus        56 ~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   91 (107)
T cd04610          56 EIMSKD---LVVAVPEMDIMDAARVMFRTGISKLPVVDE   91 (107)
T ss_pred             HhCCCC---CeEECCCCCHHHHHHHHHHhCCCeEeEECC
Confidence            999754   888999999999999998 67889988754

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.99  E-value=4.1e-09  Score=87.01  Aligned_cols=107  Identities=20%  Similarity=0.255  Sum_probs=85.4

Q ss_pred             ccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCCCCCCCcCCCCC
Q 013939          106 LLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRD  184 (433)
Q Consensus       106 ~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (433)
                      +++++++++++.+|++.|. ++++++||.++ +                                              +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~----------------------------------------------~   34 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-G----------------------------------------------R   34 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-C----------------------------------------------e
Confidence            5788999999999999998 68889988764 2                                              3


Q ss_pred             eEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhcccCCCeeEEecCCCCCcceEEeecc
Q 013939          185 KFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPGDPSAIAVLEPTSEDQYKIIGEIS  264 (433)
Q Consensus       185 ~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~~isavpVVd~~~~g~~klvGiIS  264 (433)
                      .+|++|+.|+.+++.+....    ...++.+  +|.++++++.+++++.+++++|.+ ...+|||++  +|  +++|+||
T Consensus        35 ~~G~v~~~dl~~~~~~~~~~----~~~~~~~--~~~~~~~~v~~~~~l~~~~~~~~~-~~~~~vv~~--~~--~~~Gvvt  103 (110)
T cd04609          35 VVGSIDESDLLDALIEGKAK----FSLPVRE--VMGEPLPTVDPDAPIEELSELLDR-GNVAVVVDE--GG--KFVGIIT  103 (110)
T ss_pred             eEEEEeHHHHHHHHhccccc----cCcCHHH--HhcCCCceeCCCCcHHHHHHHHHh-CCceeEEec--CC--eEEEEEe
Confidence            57999999999987532111    1234444  577789999999999999999988 335899987  78  9999999


Q ss_pred             hhhhhh
Q 013939          265 ASKLWK  270 (433)
Q Consensus       265 ~~DL~~  270 (433)
                      .+|+..
T Consensus       104 ~~di~~  109 (110)
T cd04609         104 RADLLK  109 (110)
T ss_pred             HHHhhc
Confidence            999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.98  E-value=3.7e-09  Score=103.19  Aligned_cols=104  Identities=20%  Similarity=0.259  Sum_probs=88.3

Q ss_pred             hhHhhhhcCCCC-eEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcc
Q 013939            8 HVVGDLTVGKPE-LAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLE   86 (433)
Q Consensus         8 ~~v~DL~~~k~~-lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~   86 (433)
                      .+|+|+|.  ++ +.++++++++.+|++.|.++++..+||+|.+             ++++|+|+..|+.+.+...    
T Consensus       155 ~~v~~im~--~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-------------g~~~Givt~~dl~~~~~~~----  215 (268)
T TIGR00393       155 VKVKDLMQ--TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-------------NQLVGVFTDGDLRRALLGG----  215 (268)
T ss_pred             hhHHHHhC--CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-------------CCEEEEEEcHHHHHHHhcC----
Confidence            46889885  44 8899999999999999999999999999863             7999999999999865432    


Q ss_pred             hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939           87 DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV  136 (433)
Q Consensus        87 ~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~  136 (433)
                         ...+.||+++|...   ++++.+++++.+|++.|. .+++++||.+++
T Consensus       216 ---~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  260 (268)
T TIGR00393       216 ---GSLKSEVRDFMTLG---PKTFKLDALLLEALEFLERRKITSLVVVDDH  260 (268)
T ss_pred             ---CcccCcHHHhCCCC---CeEECCCCcHHHHHHHHHHcCCcEEEEECCC
Confidence               12357899999865   889999999999999999 789999998643

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.98  E-value=1.8e-09  Score=95.20  Aligned_cols=116  Identities=14%  Similarity=0.143  Sum_probs=77.1

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++++.+++++.+|++.|.+ +++.+||||+  +|  +++|++|..||++.....  + .......+..           
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~--~g--~l~Givt~~Dl~~~~~~~--~-~~~~~~~~~~-----------   63 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS--DD--FLEGILTLGDIQRFLFTN--K-TTRVQPEDET-----------   63 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECC--CC--eEEEEEEHHHHHHHHhhc--c-ccccccchhh-----------
Confidence            57899999999999999998 8899999998  78  999999999998753100  0 0000000000           


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                               +..+...       ..     .+                +-.+..++.|..+++++++++++.+|++.|.+
T Consensus        64 ---------~~~~~~~-------v~-----~i----------------~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~  106 (133)
T cd04592          64 ---------KQTNTCL-------VS-----SV----------------CTKGISYGGQECGLWTCTPDTDLTTAKKLMEA  106 (133)
T ss_pred             ---------ccccccc-------HH-----HH----------------hhhhhhhcccCCCCEEECCCCCHHHHHHHHHH
Confidence                     0000000       00     00                00000001135789999999999999999999


Q ss_pred             cCCCEEEEEeCC
Q 013939          381 HRATHVWVTEDE  392 (433)
Q Consensus       381 ~~vhrl~VVD~~  392 (433)
                      ++++++||+|+.
T Consensus       107 ~~~~~lPVvd~~  118 (133)
T cd04592         107 KGVKQLPVVKRG  118 (133)
T ss_pred             cCCCcCCEecCC
Confidence            999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.98  E-value=7.6e-09  Score=86.63  Aligned_cols=87  Identities=28%  Similarity=0.377  Sum_probs=73.2

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      +.+.++++++++.++.+.|.+++...+||+|...          ..++++|+++..|+.+....                
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~----------~~~~~~G~v~~~dl~~~~~~----------------   55 (105)
T cd04591           2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTE----------ESPRLVGYILRSQLVVALKN----------------   55 (105)
T ss_pred             CceEEecccccHHHHHHHHHhCCCCCcceEcCCC----------CCCEEEEEEeHHHHHHHHHH----------------
Confidence            4578899999999999999999999999998620          01689999999999876421                


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeee
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPK  134 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~  134 (433)
                       +|..+   +.++++++++.++++.|. ++.+.+||..
T Consensus        56 -~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~~pVv~   89 (105)
T cd04591          56 -YIDPS---PFTVSPRTSLEKVHQLFRKLGLRHLLVVD   89 (105)
T ss_pred             -hccCC---CceECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence             67644   889999999999999998 7899999974

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.97  E-value=3.8e-09  Score=111.51  Aligned_cols=96  Identities=23%  Similarity=0.323  Sum_probs=80.3

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      ++++++++++|+.+|+++|.+++++++||+|.+.+          .++++|+|+.+|++...  .         .+.+++
T Consensus        88 ~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~----------~~~lvGIVt~rDL~~~~--~---------~~~~V~  146 (450)
T TIGR01302        88 SDPVTISPETTVADVLELMERKGISGIPVVEDGDM----------TGKLVGIITKRDIRFVK--D---------KGKPVS  146 (450)
T ss_pred             cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCC----------CCeEEEEEEHHHHhhhh--c---------CCCCHH
Confidence            57899999999999999999999999999986310          15999999999996421  1         246899


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV  136 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~  136 (433)
                      ++|..  .+++++.+++++.++++.|. ++.+.+||+++.
T Consensus       147 dvm~~--~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~  184 (450)
T TIGR01302       147 EVMTR--EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKN  184 (450)
T ss_pred             HhhCC--CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCC
Confidence            99983  14999999999999999999 789999998653

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.96  E-value=1e-08  Score=90.54  Aligned_cols=101  Identities=25%  Similarity=0.376  Sum_probs=79.8

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC---Ccc--------
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD---CLE--------   86 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~---~l~--------   86 (433)
                      ++++++++++++.+|++.|.++++.++||+|.              ++++|+++..|+++++....   ...        
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--------------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~   66 (143)
T cd04634           1 KNPITCNADDTISDAARLLRENKISGAPVLDG--------------GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELI   66 (143)
T ss_pred             CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC--------------CeEEEEecHHHHHHHHHhccCccccccCCcceee
Confidence            45789999999999999999999999999984              58999999999998775321   000        


Q ss_pred             ---------------hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           87 ---------------DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        87 ---------------~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                                     ...+....++.++|...   +.++.+++++.+++..|. .+.+++||.++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~  128 (143)
T cd04634          67 ELPLREFINWEETKRALTDAGKMKVRDIMTKK---VITISPDASIEDAAELMVRHKIKRLPVVED  128 (143)
T ss_pred             eccchheeehHHHHHHHHHHhcCCHHHHcCCC---CeEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence                           00011245678888654   899999999999999998 67889999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.94  E-value=1.2e-08  Score=84.57  Aligned_cols=84  Identities=21%  Similarity=0.182  Sum_probs=72.6

Q ss_pred             EEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchhcc
Q 013939           21 AEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVI  100 (433)
Q Consensus        21 Vtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~Im  100 (433)
                      +++++++++.+|++.|.++++..+||+|.              ++++|+++..|+.+..             ..++.++|
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~v~~~~l~~~~-------------~~~~~~~~   56 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--------------NKFLGAVYLKDIENAT-------------YGDVVDYI   56 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC--------------CEEEEEEEHHHHhhhc-------------ccchhhhh
Confidence            67899999999999999999999999984              5899999999997631             13577788


Q ss_pred             ccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeee
Q 013939          101 VPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPK  134 (433)
Q Consensus       101 ~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~  134 (433)
                      ...   .++++++.++.++++.|. ++.+++||++
T Consensus        57 ~~~---~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~   88 (104)
T cd04594          57 VRG---IPYVRLTSTAEEAWEVMMKNKTRWCPVVD   88 (104)
T ss_pred             hcC---CcEEcCCCCHHHHHHHHHHcCcceEEEEE
Confidence            644   789999999999999999 7889999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.93  E-value=3.9e-09  Score=78.72  Aligned_cols=52  Identities=23%  Similarity=0.372  Sum_probs=49.7

Q ss_pred             CCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHH
Q 013939          358 GRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVT  411 (433)
Q Consensus       358 ~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~  411 (433)
                      |.++++++++++++.++++.|.+++++++||+|++  |+++|+||++||++++.
T Consensus         5 m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~--~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    5 MTPPPITVSPDDSLEEALEIMRKNGISRLPVVDED--GKLVGIISRSDLLKALL   56 (57)
T ss_dssp             SBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT--SBEEEEEEHHHHHHHHH
T ss_pred             CcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC--CEEEEEEEHHHHHhhhh
Confidence            57799999999999999999999999999999998  99999999999999875

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.91  E-value=7.3e-09  Score=110.48  Aligned_cols=97  Identities=21%  Similarity=0.201  Sum_probs=80.6

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      ++++++++++|+.+|+++|.+++++.+||+|.+..          +++++|+|+..|+...  .         ..+.+|+
T Consensus       104 ~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~----------~gkLvGIVt~~DL~~~--~---------~~~~~V~  162 (495)
T PTZ00314        104 MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKV----------GGKLLGIVTSRDIDFV--K---------DKSTPVS  162 (495)
T ss_pred             cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCcc----------CCeEEEEEEHHHHhhc--c---------cCCCCHH
Confidence            56799999999999999999999999999986310          2799999999999621  1         1247899


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV  136 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~  136 (433)
                      ++|... .+++++.+++++.||+++|. ++++.+||++++
T Consensus       163 diMt~~-~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~  201 (495)
T PTZ00314        163 EVMTPR-EKLVVGNTPISLEEANEVLRESRKGKLPIVNDN  201 (495)
T ss_pred             HhhCCc-CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC
Confidence            999851 24999999999999999999 789999998653

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.83  E-value=5e-08  Score=82.08  Aligned_cols=90  Identities=18%  Similarity=0.220  Sum_probs=71.8

Q ss_pred             CeEEEcCCccHHHHHHHHHhcC-CCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           19 ELAEFYETETVEAAIKAIGEST-ECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~-I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      ++.++++++++.+|++.|.+++ +..+||+|.              ++++|+++..|++.++.....   .....+.++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--------------~~~~G~v~~~~l~~~~~~~~~---~~~~~~~~v~   64 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--------------GRPVGLIMREALMELLSTPYG---RALYGKKPVS   64 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--------------CeeEEEEEHHHHHHHHhchhh---HHHHcCCcHH
Confidence            4567899999999999999887 899999995              589999999999876543100   0111246799


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCC
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVR  128 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~  128 (433)
                      ++|...   ++.+.+++++.+++..|. ++.+
T Consensus        65 ~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~   93 (119)
T cd04598          65 EVMDPD---PLIVEADTPLEEVSRLATGRDSQ   93 (119)
T ss_pred             HhcCCC---cEEecCCCCHHHHHHHHHcCCcc
Confidence            999764   999999999999999998 5654

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.82  E-value=1.5e-08  Score=75.57  Aligned_cols=56  Identities=23%  Similarity=0.440  Sum_probs=51.5

Q ss_pred             HhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhh
Q 013939           10 VGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLA   80 (433)
Q Consensus        10 v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~   80 (433)
                      |+|+|.  ++++++++++++.+|++.|.+++++++||+|++             ++++|++|..||++++.
T Consensus         1 v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-------------~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMT--PPPITVSPDDSLEEALEIMRKNGISRLPVVDED-------------GKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSB--SSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-------------SBEEEEEEHHHHHHHHH
T ss_pred             CeECCc--CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-------------CEEEEEEEHHHHHhhhh
Confidence            578886  589999999999999999999999999999864             89999999999999875

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK11573 hypothetical protein; Provisional

Probab=98.80  E-value=1.3e-07  Score=98.83  Aligned_cols=167  Identities=13%  Similarity=0.158  Sum_probs=117.4

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      .|...+|+|+|.-..++++++.+++++++++.+.+.+.+++||++..            .+.++|++...|++.++.+..
T Consensus       183 ~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~------------~D~IiGiv~~kDll~~~~~~~  250 (413)
T PRK11573        183 DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS------------LDDAISMLRVREAYRLMTEKK  250 (413)
T ss_pred             ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC------------CCceEEEEEHHHHHHHhhccC
Confidence            57788999999877899999999999999999999999999999854            378999999999998654321


Q ss_pred             CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHHcCCCeEEeeecCcccccccchhhhccccccccccccCcc
Q 013939           84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSS  163 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~  163 (433)
                      ...      ...+.++|.    ++..|+++.++.++++.|.++-.++.++.|.-                          
T Consensus       251 ~~~------~~~l~~~~r----~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEy--------------------------  294 (413)
T PRK11573        251 EFT------KENMLRAAD----EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY--------------------------  294 (413)
T ss_pred             cCC------HHHHHhhcc----CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecC--------------------------
Confidence            110      012334443    47889999999999999995444455443321                          


Q ss_pred             ccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccC-CCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhcc
Q 013939          164 SNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLG-ALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAP  240 (433)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~-~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~  240 (433)
                                         |...||||.+||+.-+.+.+. +........+..   .....+.++...++.|.-+.+.
T Consensus       295 -------------------G~~~GiVTleDilEeivGei~de~d~~~~~~i~~---~~~~~~~v~G~~~l~d~~~~l~  350 (413)
T PRK11573        295 -------------------GDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTP---QNDGSVIIDGTANVREINKAFN  350 (413)
T ss_pred             -------------------CCeEEEeeHHHHHHHHhCCCCcccCcccccceEE---ecCCEEEEEeeeEHHHHHHHhC
Confidence                               234799999999998864321 111100111211   1234667777788877777664

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.77  E-value=1.1e-07  Score=78.61  Aligned_cols=89  Identities=20%  Similarity=0.336  Sum_probs=74.7

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      +++++.+++++.+|++.|.+++++.+||++.+             ++++|+++..|++..  ..          +.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------~~~~g~v~~~~l~~~--~~----------~~~~~~   56 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-------------GELVGIITRKDLLRN--PE----------EEQLAL   56 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-------------CcEEEEEEHHHHHhc--cc----------cchHHH
Confidence            57899999999999999999999999999863             789999999999752  10          135677


Q ss_pred             ccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           99 VIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        99 Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      +|...   ..++.+++++.++++.|. ++.+.+||.++
T Consensus        57 ~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~   91 (106)
T cd04638          57 LMTRD---PPTVSPDDDVKEAAKLMVENNIRRVPVVDD   91 (106)
T ss_pred             HhcCC---CceECCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            77644   888999999999999999 78889999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11573 hypothetical protein; Provisional

Probab=98.69  E-value=1.3e-07  Score=98.88  Aligned_cols=129  Identities=11%  Similarity=0.125  Sum_probs=102.8

Q ss_pred             CCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhcc
Q 013939          208 LPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLS  284 (433)
Q Consensus       208 l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~  284 (433)
                      +..+++++  +|++  ++++++.++++.++++++.+ +++++||.+++ .+  .++|++..+|+......          
T Consensus       184 l~~~~v~e--iMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~-~D--~IiGiv~~kDll~~~~~----------  248 (413)
T PRK11573        184 LEKVTVDD--IMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS-LD--DAISMLRVREAYRLMTE----------  248 (413)
T ss_pred             cCCCChhh--cCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC-CC--ceEEEEEHHHHHHHhhc----------
Confidence            45667776  6885  79999999999999999999 99999999862 24  89999999999753200          


Q ss_pred             chhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeE
Q 013939          285 AGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLT  364 (433)
Q Consensus       285 ~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it  364 (433)
                                 +                +...       .     .++                       ....++++.
T Consensus       249 -----------~----------------~~~~-------~-----~~l-----------------------~~~~r~~~~  266 (413)
T PRK11573        249 -----------K----------------KEFT-------K-----ENM-----------------------LRAADEIYF  266 (413)
T ss_pred             -----------c----------------CcCC-------H-----HHH-----------------------HhhccCCeE
Confidence                       0                0000       0     000                       012458899


Q ss_pred             ecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          365 CKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       365 ~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      +.++.++.+++..|.+++.|-.-|||+-  |..+||||+.||+..+..+-.
T Consensus       267 Vpe~~~l~~lL~~~~~~~~~~AiVvDEy--G~~~GiVTleDilEeivGei~  315 (413)
T PRK11573        267 VPEGTPLSTQLVKFQRNKKKVGLVVDEY--GDIQGLVTVEDILEEIVGDFT  315 (413)
T ss_pred             eCCCCcHHHHHHHHHhcCCeEEEEEecC--CCeEEEeeHHHHHHHHhCCCC
Confidence            9999999999999999999999999998  999999999999999998654

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.57  E-value=4.3e-07  Score=91.32  Aligned_cols=118  Identities=23%  Similarity=0.307  Sum_probs=100.9

Q ss_pred             hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939            9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ   88 (433)
Q Consensus         9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~   88 (433)
                      +|.|++.--.+...+.++++|++=.++-.+.+.++-||+|..             .+++|+|+++|++..          
T Consensus       189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~-------------~kvvGvVt~rDv~~~----------  245 (432)
T COG4109         189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRS-------------MKVVGVVTMRDVLDK----------  245 (432)
T ss_pred             eHHHhccccccceeccccccHHHHHHHHHHcCCCccceeccc-------------ceEEEEEEehhhhcC----------
Confidence            356666533456889999999999999999999999999974             799999999999753          


Q ss_pred             HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccccc
Q 013939           89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNL  167 (433)
Q Consensus        89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  167 (433)
                        .-++++..+|+++   ++++.+.+|+..+...|. .|+.=+||++++.                              
T Consensus       246 --~~~t~ieKVMtkn---p~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~------------------------------  290 (432)
T COG4109         246 --KPSTTIEKVMTKN---PITVRAKTSVASVAQMMIWEGIEMLPVVDSNN------------------------------  290 (432)
T ss_pred             --CCCccHHHHhccC---CeeecccchHHHHHHHHHhccceeeeEEcCCc------------------------------
Confidence              1258899999987   999999999999999999 7999999987643                              


Q ss_pred             ccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          168 IANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                      .++||||+.|+++-+..
T Consensus       291 ----------------~llGiitR~dvlk~lq~  307 (432)
T COG4109         291 ----------------TLLGIITRQDVLKSLQM  307 (432)
T ss_pred             ----------------eEEEEEEHHHHHHHHHH
Confidence                            45899999999998854

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.57  E-value=3.8e-07  Score=96.02  Aligned_cols=121  Identities=13%  Similarity=0.183  Sum_probs=100.5

Q ss_pred             CCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc------CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHh
Q 013939          208 LPLSSISSLGVINPNYSSIEASVPAIEATLKAPG------DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALA  281 (433)
Q Consensus       208 l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~------~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~  281 (433)
                      .+..+.+.  +|+...+++.++.|+.+|+..+++      .+..+-|||.  ++  |++|.+|-++|..-....      
T Consensus       129 y~e~taG~--~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~--~~--~L~Gvvsl~~Ll~a~~~~------  196 (451)
T COG2239         129 YPEDTAGR--IMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE--KG--KLLGVVSLRDLLTAEPDE------  196 (451)
T ss_pred             CChhhhhc--cceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC--cc--ceEEEeeHHHHhcCCcHh------
Confidence            34455665  699999999999999999988883      5778999998  88  999999999997543100      


Q ss_pred             hccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCC
Q 013939          282 NLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRST  361 (433)
Q Consensus       282 ~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (433)
                                                     +-               .                         ..|...
T Consensus       197 -------------------------------~i---------------~-------------------------~im~~~  205 (451)
T COG2239         197 -------------------------------LL---------------K-------------------------DLMEDD  205 (451)
T ss_pred             -------------------------------HH---------------H-------------------------HHhccc
Confidence                                           00               0                         124667


Q ss_pred             CeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          362 PLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       362 ~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      ++++.++++.+++++.+-.++.-.+||||++  ++++|+||..||+..+..+
T Consensus       206 ~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~--~~LiG~itiDDiidvi~eE  255 (451)
T COG2239         206 VVSVLADDDQEEVARLFEKYDLLAVPVVDED--NRLIGIITIDDIIDVIEEE  255 (451)
T ss_pred             ceeecccCCHHHHHHHHHHhCCeecceECCC--CceeeeeeHHHHHHHHHHH
Confidence            9999999999999999999999999999998  9999999999999998763

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.53  E-value=2.3e-06  Score=89.96  Aligned_cols=168  Identities=18%  Similarity=0.140  Sum_probs=117.4

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      .|-.+.|.++|.-..++++++.+.+++++.+.+.+.+.+++||++..            .+.++|++...|++.++.+..
T Consensus       202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~------------~D~iiGiv~~Kdll~~~~~~~  269 (429)
T COG1253         202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD------------LDNIIGIVHVKDLLRALLDGQ  269 (429)
T ss_pred             ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC------------CCcEEEEEEHHHHHHHHhcCc
Confidence            46678899999877899999999999999999999999999999943            479999999999999876542


Q ss_pred             CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHHcCCCeEEeeecCcccccccchhhhccccccccccccCcc
Q 013939           84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSS  163 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~  163 (433)
                      ...        -....+.    +++.|++..++.++++.|.+.-.|+.++.|.-                          
T Consensus       270 ~~~--------~~~~~~~----~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy--------------------------  311 (429)
T COG1253         270 SDL--------DLRVLVR----PPLFVPETLSLSDLLEEFREERTHMAIVVDEY--------------------------  311 (429)
T ss_pred             ccc--------chhhccc----CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC--------------------------
Confidence            100        0111111    48999999999999999995444455544321                          


Q ss_pred             ccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccC-CCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhcccC
Q 013939          164 SNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLG-ALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPGD  242 (433)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~-~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~~  242 (433)
                                         |...|+||.+||+.-+.+... +........+-  ...... ..+...+++.|..+.+.-.
T Consensus       312 -------------------G~~~GlVTleDIiEeIvGei~de~d~~~~~~~~--~~~~~~-~~v~G~~~l~e~~~~l~~~  369 (429)
T COG1253         312 -------------------GGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDII--QRDDDG-WLVDGRVPLEELEELLGID  369 (429)
T ss_pred             -------------------CCeEEEeEHHHHHHHHhCCCcCcccccccccce--EecCCc-EEEeccccHHHHHHHhCCC
Confidence                               245899999999998864221 11110011111  112233 6677778887777776643


Q ss_pred             C
Q 013939          243 P  243 (433)
Q Consensus       243 i  243 (433)
                      .
T Consensus       370 ~  370 (429)
T COG1253         370 L  370 (429)
T ss_pred             C
Confidence            3

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.47  E-value=1.3e-06  Score=91.70  Aligned_cols=127  Identities=17%  Similarity=0.195  Sum_probs=102.9

Q ss_pred             CCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhcc
Q 013939          208 LPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLS  284 (433)
Q Consensus       208 l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~  284 (433)
                      +..+++++  +|++  +++++..+.++.++.+.+.+ ++|++||.+++ .+  .++|++..+||......          
T Consensus       203 l~~~~v~e--iMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~-~D--~iiGiv~~Kdll~~~~~----------  267 (429)
T COG1253         203 LDDRTVRE--IMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD-LD--NIIGIVHVKDLLRALLD----------  267 (429)
T ss_pred             cCCcEeee--EeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC-CC--cEEEEEEHHHHHHHHhc----------
Confidence            55677776  6885  79999999999999999988 99999999942 44  99999999999865310          


Q ss_pred             chhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeE
Q 013939          285 AGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLT  364 (433)
Q Consensus       285 ~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it  364 (433)
                               +                  +. ..             ..                       ...-.+++.
T Consensus       268 ---------~------------------~~-~~-------------~~-----------------------~~~~~~~~~  283 (429)
T COG1253         268 ---------G------------------QS-DL-------------DL-----------------------RVLVRPPLF  283 (429)
T ss_pred             ---------C------------------cc-cc-------------ch-----------------------hhcccCCeE
Confidence                     0                  00 00             00                       001228999


Q ss_pred             ecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          365 CKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       365 ~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      +.+..++.+++++|.+++.|---|+|+-  |...|+||+.||+..+...-+
T Consensus       284 Vpet~~~~~lL~~~r~~~~hmAiVvDEy--G~~~GlVTleDIiEeIvGei~  332 (429)
T COG1253         284 VPETLSLSDLLEEFREERTHMAIVVDEY--GGVEGLVTLEDIIEEIVGEIP  332 (429)
T ss_pred             ecCCCcHHHHHHHHHHhCCeEEEEEEcC--CCeEEEeEHHHHHHHHhCCCc
Confidence            9999999999999999999999999998  999999999999999998654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.37  E-value=3.2e-06  Score=87.14  Aligned_cols=113  Identities=14%  Similarity=0.153  Sum_probs=89.9

Q ss_pred             CCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCC
Q 013939          220 NPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTP  298 (433)
Q Consensus       220 ~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~  298 (433)
                      ....+...++.+..++++.|.. +...+.|+|+  ++  +++|.++..++..+. .                   .    
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~g~~~~~~~~~~~-~-------------------~----  300 (363)
T TIGR01186       249 NTGPITKTADKGPRSALQLMRDERVDSLYVVDR--QN--KLVGVVDVESIKQAR-K-------------------K----  300 (363)
T ss_pred             cccceeecCCCCHHHHHHHHHhcCCceEEEEcC--CC--CEEEEEeHHHHHHHh-h-------------------c----
Confidence            3445567788899999999998 8888999998  78  999999999886442 0                   0    


Q ss_pred             CCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHH
Q 013939          299 RSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQM  378 (433)
Q Consensus       299 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m  378 (433)
                                    .+                ++      +                +.+.....++.++++|.+++.+|
T Consensus       301 --------------~~----------------~~------~----------------~~~~~~~~~~~~~~~~~~~~~~~  328 (363)
T TIGR01186       301 --------------AQ----------------GL------Q----------------DVLIDDIYTVDAGTLLRETVRKV  328 (363)
T ss_pred             --------------CC----------------ch------h----------------hhhccCCceECCCCcHHHHHHHH
Confidence                          00                00      0                11244567899999999999999


Q ss_pred             HHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          379 LSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       379 ~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      .+++.. +||||++  |+++|+||..+|++++..+-+
T Consensus       329 ~~~~~~-~~v~~~~--~~~~g~i~~~~~~~~~~~~~~  362 (363)
T TIGR01186       329 LKAGIK-VPVVDED--QRLVGIVTRGSLVDALYDSRE  362 (363)
T ss_pred             HhCCCC-EEEECCC--CcEEEEEEHHHHHHHHHhhcc
Confidence            999999 9999998  999999999999999987543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.22  E-value=2.7e-06  Score=87.03  Aligned_cols=112  Identities=18%  Similarity=0.169  Sum_probs=90.2

Q ss_pred             CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCC
Q 013939          222 NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRS  300 (433)
Q Consensus       222 ~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  300 (433)
                      +++.+.|+.++.++++.-.. .++++||.+++--|. ||||+||.+|+-.+.                     +      
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~-KLvG~vtsrdi~f~~---------------------~------  168 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGS-KLVGIITSRDIQFLE---------------------D------  168 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccc-eeEEEEehhhhhhhh---------------------c------
Confidence            47788999999999988888 999999998521223 999999999985431                     0      


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHH
Q 013939          301 FPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLS  380 (433)
Q Consensus       301 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~  380 (433)
                                  .+.                + ++                    +.|+..+++...+.+|+++=+.|-+
T Consensus       169 ------------~~~----------------~-~~--------------------~vmt~~~~~~~~gi~l~~~neiL~~  199 (503)
T KOG2550|consen  169 ------------NSL----------------L-VS--------------------DVMTKNPVTGAQGITLKEANEILKK  199 (503)
T ss_pred             ------------ccc----------------h-hh--------------------hhcccccccccccccHHHHHHHHHh
Confidence                        010                0 00                    3367777999999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          381 HRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       381 ~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      ++-.++||||++  |.||.||+++|+.+.---
T Consensus       200 ~kkGkl~iv~~~--gelva~~~rtDl~k~~~y  229 (503)
T KOG2550|consen  200 IKKGKLPVVDDK--GELVAMLSRTDLMKNRDY  229 (503)
T ss_pred             hhcCCcceeccC--CceeeeeehhhhhhhcCC
Confidence            999999999998  999999999999887543

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.21  E-value=8.4e-06  Score=85.04  Aligned_cols=107  Identities=16%  Similarity=0.197  Sum_probs=85.6

Q ss_pred             EEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCCCC
Q 013939          225 SIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPD  303 (433)
Q Consensus       225 tv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~  303 (433)
                      ...++.+..+|++.|.. +...+.|+|+  ++  +++|.++..|+......                             
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~g~~~~~~~~~~~~~-----------------------------  335 (400)
T PRK10070        289 RKTPGFGPRSALKLLQDEDREYGYVIER--GN--KFVGAVSIDSLKTALTQ-----------------------------  335 (400)
T ss_pred             ccCCCCCHHHHHHHHHhcCCceEEEEcC--CC--cEEEEEeHHHHHhhhhc-----------------------------
Confidence            34577789999999999 8999999998  88  99999999998643200                             


Q ss_pred             cccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCC
Q 013939          304 YSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRA  383 (433)
Q Consensus       304 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~v  383 (433)
                               ..                .+  .                    ..+.....+++++++|.+++..|.++..
T Consensus       336 ---------~~----------------~~--~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (400)
T PRK10070        336 ---------QQ----------------GL--D--------------------AALIDAPLAVDAQTPLSELLSHVGQAPC  368 (400)
T ss_pred             ---------CC----------------ch--h--------------------hhhccCCceeCCCCCHHHHHHHHHhCCC
Confidence                     00                00  0                    0123456789999999999999999776


Q ss_pred             CEEEEEeCCCCCeEEEEEeHHHHHHHHHhCC
Q 013939          384 THVWVTEDESDDVLVGVVGYADILVAVTKQP  414 (433)
Q Consensus       384 hrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~  414 (433)
                      . +||||++  |+++|+||..++++++....
T Consensus       369 ~-~~v~~~~--~~~~g~~~~~~~~~~~~~~~  396 (400)
T PRK10070        369 A-VPVVDED--QQYVGIISKGMLLRALDREG  396 (400)
T ss_pred             c-EEEECCC--CcEEEEEEHHHHHHHHHhcC
Confidence            6 9999998  99999999999999997654

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.17  E-value=6.2e-06  Score=56.99  Aligned_cols=48  Identities=25%  Similarity=0.362  Sum_probs=44.1

Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHH
Q 013939          361 TPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAV  410 (433)
Q Consensus       361 ~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i  410 (433)
                      ++.++.+++++.+++..|.+++++++||++++  ++++|+++..|+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~g~i~~~~l~~~~   48 (49)
T smart00116        1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEE--GRLVGIVTRRDIIKAL   48 (49)
T ss_pred             CceEecCCCcHHHHHHHHHHhCCCcccEECCC--CeEEEEEEHHHHHHhh
Confidence            35788999999999999999999999999987  8999999999998765

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.02  E-value=1.3e-05  Score=82.06  Aligned_cols=96  Identities=29%  Similarity=0.279  Sum_probs=78.9

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      .+.+++.|+.|+.+++++-..+++..+||.+...          .+.|++||||.+|+= |+ ++         -.++++
T Consensus       116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~----------~~~KLvG~vtsrdi~-f~-~~---------~~~~~~  174 (503)
T KOG2550|consen  116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGK----------RGSKLVGIITSRDIQ-FL-ED---------NSLLVS  174 (503)
T ss_pred             cCCcccCCcccchhhhhhcccccccccccccCCc----------ccceeEEEEehhhhh-hh-hc---------ccchhh
Confidence            4668999999999999999999999999987432          258999999999984 44 22         137899


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCc
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVV  137 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~  137 (433)
                      ++|+..   .++...+.+|.++=+++. +.-+++||+++.+
T Consensus       175 ~vmt~~---~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~g  212 (503)
T KOG2550|consen  175 DVMTKN---PVTGAQGITLKEANEILKKIKKGKLPVVDDKG  212 (503)
T ss_pred             hhcccc---cccccccccHHHHHHHHHhhhcCCcceeccCC
Confidence            999976   488888999999999988 5677898887643

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=97.98  E-value=6.7e-05  Score=76.47  Aligned_cols=108  Identities=18%  Similarity=0.269  Sum_probs=85.8

Q ss_pred             cchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCc
Q 013939            6 IYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCL   85 (433)
Q Consensus         6 ~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l   85 (433)
                      ..-+|.|+|.-..++..++.+++.++.++.+....-+++|+|..+            -+.++|++-.+|+++++.+.+++
T Consensus       198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~------------~DnIiGvlh~r~llr~l~e~~~~  265 (423)
T COG4536         198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD------------LDNIIGVLHVRDLLRLLNEKNEF  265 (423)
T ss_pred             ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCC------------hhHhhhhhhHHHHHHHhhccCcc
Confidence            455799999877899999999999999999999999999999865            26799999999999999876433


Q ss_pred             chHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHHcCCCeEEeeec
Q 013939           86 EDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKS  135 (433)
Q Consensus        86 ~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~~~  135 (433)
                      .      +..+..+..    ++|-++.+++|.+-+..|.++-.|+.++.|
T Consensus       266 ~------k~d~~~~a~----epyFVPe~Tpl~~QL~~F~~~k~hialVVD  305 (423)
T COG4536         266 T------KEDILRAAD----EPYFVPEGTPLSDQLVAFQRNKKHIALVVD  305 (423)
T ss_pred             c------HhHHHHHhc----CCeecCCCCcHHHHHHHHHHhcceEEEEEe
Confidence            2      111222222    379999999999999999966566655433

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=97.93  E-value=5.7e-05  Score=79.75  Aligned_cols=118  Identities=14%  Similarity=0.196  Sum_probs=97.7

Q ss_pred             chhHhhhhcCCCCeEEEcCCccHHHHHHHHHh-----cCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhc
Q 013939            7 YHVVGDLTVGKPELAEFYETETVEAAIKAIGE-----STECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAK   81 (433)
Q Consensus         7 ~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e-----~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~   81 (433)
                      ..+++-+|.  .+.++++++.|+.+|+..+.+     ..+..+-|+|..             ++++|+++.++++..  +
T Consensus       131 e~taG~~Mt--~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-------------~~L~Gvvsl~~Ll~a--~  193 (451)
T COG2239         131 EDTAGRIMT--TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-------------GKLLGVVSLRDLLTA--E  193 (451)
T ss_pred             hhhhhccce--eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-------------cceEEEeeHHHHhcC--C
Confidence            345566653  789999999999999999994     346778888864             799999999999742  2


Q ss_pred             CCCcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhcccccccccccc
Q 013939           82 SDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDAS  160 (433)
Q Consensus        82 ~~~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~  160 (433)
                      +          +++++++|...   ++.+.+++...++..+|. .+.-.+||+++++                       
T Consensus       194 ~----------~~~i~~im~~~---~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~-----------------------  237 (451)
T COG2239         194 P----------DELLKDLMEDD---VVSVLADDDQEEVARLFEKYDLLAVPVVDEDN-----------------------  237 (451)
T ss_pred             c----------HhHHHHHhccc---ceeecccCCHHHHHHHHHHhCCeecceECCCC-----------------------
Confidence            2          47899999965   999999999999999999 7888899987643                       


Q ss_pred             CccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          161 NSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                             +++|+||+.|++.-+.+
T Consensus       238 -----------------------~LiG~itiDDiidvi~e  254 (451)
T COG2239         238 -----------------------RLIGIITIDDIIDVIEE  254 (451)
T ss_pred             -----------------------ceeeeeeHHHHHHHHHH
Confidence                                   56999999999998854

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.88  E-value=3.4e-05  Score=65.58  Aligned_cols=50  Identities=18%  Similarity=0.286  Sum_probs=46.1

Q ss_pred             CCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          357 RGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       357 ~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                      .|..++.++.+++++.++++.|.+++.+.+||+|++  |+++||||..||.+
T Consensus        63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~~l~Givt~~dl~~  112 (113)
T cd04597          63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDD--GTPAGIITLLDLAE  112 (113)
T ss_pred             hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCC--CeEEEEEEHHHhhc
Confidence            356789999999999999999999999999999987  89999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.80  E-value=0.00027  Score=72.99  Aligned_cols=106  Identities=15%  Similarity=0.236  Sum_probs=86.6

Q ss_pred             EEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchhcc
Q 013939           21 AEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVI  100 (433)
Q Consensus        21 Vtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~Im  100 (433)
                      +...++.+..++++.|..+++.++.|+|.+             +++.|.++..++..|+...           ..+.+.|
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~~~~~~~~~-----------~~~~~~~  308 (363)
T TIGR01186       253 ITKTADKGPRSALQLMRDERVDSLYVVDRQ-------------NKLVGVVDVESIKQARKKA-----------QGLQDVL  308 (363)
T ss_pred             eeecCCCCHHHHHHHHHhcCCceEEEEcCC-------------CCEEEEEeHHHHHHHhhcC-----------Cchhhhh
Confidence            456678899999999999999999999964             7999999999998876432           3466666


Q ss_pred             ccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCCCCCCCc
Q 013939          101 VPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSST  179 (433)
Q Consensus       101 ~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  179 (433)
                      ...   +.++.++++|.+++..|. .+.. +||+++++                                          
T Consensus       309 ~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~------------------------------------------  342 (363)
T TIGR01186       309 IDD---IYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQ------------------------------------------  342 (363)
T ss_pred             ccC---CceECCCCcHHHHHHHHHhCCCC-EEEECCCC------------------------------------------
Confidence            543   788999999999999999 5655 98876543                                          


Q ss_pred             CCCCCeEEEeeHHHHHHHHHH
Q 013939          180 TSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       180 ~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                          +.+|+||..++++.+..
T Consensus       343 ----~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       343 ----RLVGIVTRGSLVDALYD  359 (363)
T ss_pred             ----cEEEEEEHHHHHHHHHh
Confidence                46899999999998864

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.76  E-value=0.0003  Score=73.48  Aligned_cols=106  Identities=16%  Similarity=0.105  Sum_probs=85.3

Q ss_pred             EEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchhccc
Q 013939           22 EFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIV  101 (433)
Q Consensus        22 tv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~Im~  101 (433)
                      ...++.+..+|+..|.+++..++.|+|..             ++++|+++..|+..+...           +.++.+.+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~  344 (400)
T PRK10070        289 RKTPGFGPRSALKLLQDEDREYGYVIERG-------------NKFVGAVSIDSLKTALTQ-----------QQGLDAALI  344 (400)
T ss_pred             ccCCCCCHHHHHHHHHhcCCceEEEEcCC-------------CcEEEEEeHHHHHhhhhc-----------CCchhhhhc
Confidence            44577789999999999999999999974             799999999999876432           234666665


Q ss_pred             cCCCccEEeCCCCcHHHHHHHHHcCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCCCCCCCcCC
Q 013939          102 PNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTTS  181 (433)
Q Consensus       102 ~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (433)
                      ..   +.++.++++|.+++..|...-..+||+++++                                            
T Consensus       345 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------------------------------------------  377 (400)
T PRK10070        345 DA---PLAVDAQTPLSELLSHVGQAPCAVPVVDEDQ--------------------------------------------  377 (400)
T ss_pred             cC---CceeCCCCCHHHHHHHHHhCCCcEEEECCCC--------------------------------------------
Confidence            43   7899999999999999995444488876433                                            


Q ss_pred             CCCeEEEeeHHHHHHHHHH
Q 013939          182 VRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       182 ~~~~~~iiTq~Dvi~~l~~  200 (433)
                        +.+|+||..++++.+.+
T Consensus       378 --~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        378 --QYVGIISKGMLLRALDR  394 (400)
T ss_pred             --cEEEEEEHHHHHHHHHh
Confidence              56899999999999864

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.66  E-value=7.8e-05  Score=63.38  Aligned_cols=53  Identities=19%  Similarity=0.182  Sum_probs=47.4

Q ss_pred             CcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhh
Q 013939          212 SISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWK  270 (433)
Q Consensus       212 tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~  270 (433)
                      ++++  +|.+++.++.+++++.+|++.|.+ ++..+||+|+  +|  +++|+||.+||..
T Consensus        59 ~v~d--im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--~~--~l~Givt~~dl~~  112 (113)
T cd04597          59 RVRD--VINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD--DG--TPAGIITLLDLAE  112 (113)
T ss_pred             hHHH--hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC--CC--eEEEEEEHHHhhc
Confidence            4554  688889999999999999999998 8999999998  78  9999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.54  E-value=0.00032  Score=48.14  Aligned_cols=47  Identities=28%  Similarity=0.402  Sum_probs=42.5

Q ss_pred             eEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHh
Q 013939           20 LAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFL   79 (433)
Q Consensus        20 lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l   79 (433)
                      .+++++++++.++++.|.++++..+||++.+             ++++|+++..|+++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-------------GRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCC-------------CeEEEEEEHHHHHHhh
Confidence            5788999999999999999999999999863             6899999999998764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.53  E-value=0.00025  Score=76.26  Aligned_cols=159  Identities=13%  Similarity=0.085  Sum_probs=100.3

Q ss_pred             cCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCc-ceEEeecchhhhhhcchhHHHHHHhhccchhhhhcccc
Q 013939          217 GVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQ-YKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVED  294 (433)
Q Consensus       217 ~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~-~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~  294 (433)
                      ++|+++|+++..-+.+...++.+.. ++.+.||||+++.+. .++.|+|=-+-|..+. ++          +.|..--. 
T Consensus       586 ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL-~~----------~~f~~~~~-  653 (762)
T KOG0474|consen  586 EVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLL-KK----------RVFVEESR-  653 (762)
T ss_pred             hhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHH-Hh----------hhhhccCc-
Confidence            3799999999999999999999999 999999999853321 1788888777766554 11          11221000 


Q ss_pred             CCCCCCCCCcccccccccccccCCCCCCCCccccc-cCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHH
Q 013939          295 NVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCS-RSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAA  373 (433)
Q Consensus       295 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~  373 (433)
                        .+..+.   +++...-+.  -      ++++.+ .+++.+.++++  .-....       ..|...|+|+.++++|..
T Consensus       654 --~~~~~~---~~~~~~~~d--~------a~r~~~i~dv~lt~~e~~--~yvDl~-------p~~n~sPytV~~~mSl~k  711 (762)
T KOG0474|consen  654 --STFDLP---VRRKFTFRD--F------AKREPSIEDVHLTSEEME--MYVDLH-------PFMNPSPYTVPETMSLAK  711 (762)
T ss_pred             --cccCcc---hhhcCCHHH--h------hhcCCchhhhhcchHhHh--hccccc-------cccCCCCcccCcccchHH
Confidence              001100   000000000  0      000000 12222222111  000000       236889999999999999


Q ss_pred             HHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHH
Q 013939          374 VMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVT  411 (433)
Q Consensus       374 v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~  411 (433)
                      +..+..+-+.+|+.||+..  ++.+||+|+.|+.+.-.
T Consensus       712 ~~~lFR~lGLRhLlVv~~~--~~~~gilTR~D~~~~~~  747 (762)
T KOG0474|consen  712 AFILFRQLGLRHLLVVPKT--NRVVGILTRKDLARYRI  747 (762)
T ss_pred             HHHHHHHhcceeEEEecCC--CceeEEEehhhhhhHHH
Confidence            9999999999999999998  88899999999986653

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=97.44  E-value=0.00055  Score=69.93  Aligned_cols=129  Identities=16%  Similarity=0.207  Sum_probs=102.3

Q ss_pred             CCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhcc
Q 013939          208 LPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLS  284 (433)
Q Consensus       208 l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~  284 (433)
                      +...||+|  +|.+  ++..+..+.+..+.++.+.. .++++|+-.+  +- +.++|++-.+|+.++.++.         
T Consensus       197 Le~~tV~D--IMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~--~~-DnIiGvlh~r~llr~l~e~---------  262 (423)
T COG4536         197 LENLTVSD--IMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRD--DL-DNIIGVLHVRDLLRLLNEK---------  262 (423)
T ss_pred             cccceeee--eeccccceeeecCCCCHHHHHHHHhhCCCCceeeecC--Ch-hHhhhhhhHHHHHHHhhcc---------
Confidence            34556666  5764  69999999999999999999 8999999986  22 3899999999998764210         


Q ss_pred             chhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeE
Q 013939          285 AGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLT  364 (433)
Q Consensus       285 ~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it  364 (433)
                       .+|             .+                                   +++              ...-.+|..
T Consensus       263 -~~~-------------~k-----------------------------------~d~--------------~~~a~epyF  279 (423)
T COG4536         263 -NEF-------------TK-----------------------------------EDI--------------LRAADEPYF  279 (423)
T ss_pred             -Ccc-------------cH-----------------------------------hHH--------------HHHhcCCee
Confidence             000             00                                   000              112458999


Q ss_pred             ecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          365 CKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       365 ~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      +...++|..-+..+.+++-|-=-|||+=  |.+.|+||+.|||..+.....
T Consensus       280 VPe~Tpl~~QL~~F~~~k~hialVVDEY--G~i~GLVTLEDIlEEIVGdft  328 (423)
T COG4536         280 VPEGTPLSDQLVAFQRNKKHIALVVDEY--GDIQGLVTLEDILEEIVGDFT  328 (423)
T ss_pred             cCCCCcHHHHHHHHHHhcceEEEEEecc--CcEEeeeeHHHHHHHHhcccc
Confidence            9999999999999999999999999998  999999999999999998766

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=97.26  E-value=0.0014  Score=63.36  Aligned_cols=164  Identities=15%  Similarity=0.175  Sum_probs=114.4

Q ss_pred             hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch
Q 013939            8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED   87 (433)
Q Consensus         8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~   87 (433)
                      -+|+|+|+-....++++.+.++.+-+..+.+..-++-||...+            .+.+.||+-..|++.|+..+...- 
T Consensus        67 l~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed------------kD~v~GIL~AKDLL~~~~~~~~~F-  133 (293)
T COG4535          67 LRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED------------KDHVEGILLAKDLLPFMRSDAEPF-  133 (293)
T ss_pred             hhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCC------------chhhhhhhhHHHHHHHhcCCcccc-
Confidence            4689999877889999999999999999999999999999865            478999999999999987653322 


Q ss_pred             HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccc
Q 013939           88 QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNN  166 (433)
Q Consensus        88 ~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~  166 (433)
                             .+.++.-    |.+.|++.-.|.-.++-|. +..|=..|+++  +                            
T Consensus       134 -------~i~~lLR----Pav~VPESKrvd~lLkeFR~~RnHMAIViDE--f----------------------------  172 (293)
T COG4535         134 -------DIKELLR----PAVVVPESKRVDRLLKEFRSQRNHMAIVIDE--F----------------------------  172 (293)
T ss_pred             -------cHHHhcc----cceecccchhHHHHHHHHHhhcCceEEEEec--c----------------------------
Confidence                   2444443    4788888889999999998 55554444432  2                            


Q ss_pred             cccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHcc-CCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhcccCCC
Q 013939          167 LIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCL-GALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPGDPS  244 (433)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~-~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~~is  244 (433)
                                      |.+-|+||-+||+.-+.+-+ +++..-....|+.   ..+.-++|.+-+++.+-=+.+..+++
T Consensus       173 ----------------GgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~---ls~~~~~VrALT~IedFNe~F~t~Fs  232 (293)
T COG4535         173 ----------------GGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQ---LSRHTWRVRALTEIEDFNEAFGTHFS  232 (293)
T ss_pred             ----------------CCeeeeEEHHHHHHHHhcccccccchhhhhhhHh---hcCCceEEEecccHHHHHHHhcCCCC
Confidence                            23458999999999886432 2222111222332   34455667766666554444443554

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=97.11  E-value=0.00099  Score=64.35  Aligned_cols=117  Identities=15%  Similarity=0.142  Sum_probs=94.5

Q ss_pred             CcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhcccc
Q 013939          218 VIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVED  294 (433)
Q Consensus       218 im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~  294 (433)
                      +|-  ...+++..+.++.+++..|.+ .+|+.||+.+. ..  .+.||+-+.||++....                    
T Consensus        72 iMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed-kD--~v~GIL~AKDLL~~~~~--------------------  128 (293)
T COG4535          72 IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED-KD--HVEGILLAKDLLPFMRS--------------------  128 (293)
T ss_pred             hcccHHHheeccccCCHHHHHHHHHHhccccCCcccCC-ch--hhhhhhhHHHHHHHhcC--------------------
Confidence            455  479999999999999999999 99999999872 33  89999999999875300                    


Q ss_pred             CCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHH
Q 013939          295 NVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAV  374 (433)
Q Consensus       295 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v  374 (433)
                                         +         ...|+   +                       ...-+|.+.+...-.|...
T Consensus       129 -------------------~---------~~~F~---i-----------------------~~lLRPav~VPESKrvd~l  154 (293)
T COG4535         129 -------------------D---------AEPFD---I-----------------------KELLRPAVVVPESKRVDRL  154 (293)
T ss_pred             -------------------C---------ccccc---H-----------------------HHhcccceecccchhHHHH
Confidence                               0         00010   0                       1135688888888899999


Q ss_pred             HHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          375 MAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       375 ~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      +.....+|-|---|||+=  |-.-|.||..|||..+...
T Consensus       155 LkeFR~~RnHMAIViDEf--GgVsGLVTIEDiLEqIVGd  191 (293)
T COG4535         155 LKEFRSQRNHMAIVIDEF--GGVSGLVTIEDILEQIVGD  191 (293)
T ss_pred             HHHHHhhcCceEEEEecc--CCeeeeEEHHHHHHHHhcc
Confidence            999999999999999998  9999999999999999864

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.78  E-value=0.0047  Score=66.80  Aligned_cols=118  Identities=19%  Similarity=0.285  Sum_probs=84.1

Q ss_pred             ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcC--
Q 013939            5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKS--   82 (433)
Q Consensus         5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~--   82 (433)
                      |.+-+++|++.  ++|++++.-+.|...++.|...+=.+-||+|.....        -.+++.|+|=-..++..|-+.  
T Consensus       579 mr~L~a~ev~~--~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~--------~~~~l~GlILRshl~vlL~~~~f  648 (762)
T KOG0474|consen  579 MRNLTAGEVMS--KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSN--------EAGRLHGLILRSHLLVLLKKRVF  648 (762)
T ss_pred             hhhhhHhhhcc--CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCc--------cchhhhHHHHHHHHHHHHHhhhh
Confidence            44557888885  589999999999999999999999999999965310        015788888888887765421  


Q ss_pred             --C-----Ccc--------hHHhh---------------cCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEE
Q 013939           83 --D-----CLE--------DQDKA---------------MKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLL  131 (433)
Q Consensus        83 --~-----~l~--------~~~~~---------------l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~  131 (433)
                        +     ...        +..+.               +-.....+|..   ..++|.+++|+..+..+|. =|.||++
T Consensus       649 ~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~---sPytV~~~mSl~k~~~lFR~lGLRhLl  725 (762)
T KOG0474|consen  649 VEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP---SPYTVPETMSLAKAFILFRQLGLRHLL  725 (762)
T ss_pred             hccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC---CCcccCcccchHHHHHHHHHhcceeEE
Confidence              0     000        00000               01223334443   3899999999999999999 6999999


Q ss_pred             eeec
Q 013939          132 VPKS  135 (433)
Q Consensus       132 V~~~  135 (433)
                      |+..
T Consensus       726 Vv~~  729 (762)
T KOG0474|consen  726 VVPK  729 (762)
T ss_pred             EecC
Confidence            8754

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.49  E-value=0.016  Score=62.77  Aligned_cols=135  Identities=17%  Similarity=0.193  Sum_probs=88.3

Q ss_pred             CeEEEcCC-CcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccc--cCCC
Q 013939          222 NYSSIEAS-VPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVE--DNVT  297 (433)
Q Consensus       222 ~vitv~~~-~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~--~~~~  297 (433)
                      ...+++.+ +++.|...+|.+ ++++.|||=+++..  .++|.+..+|+.--. ..+      -+.-+|+.--.  .+++
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq--~lvGfv~rr~l~~~i-~~a------r~~q~~~~~~~~~f~~~  627 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQ--RLVGFVLRRNLFLAI-LNA------RKIQSFIVTTSIYFNDP  627 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEccccc--eeEEEEchHHHHHHH-hhh------ccccccceecccccCCC
Confidence            35666655 899999999999 99999999653344  999999999987432 100      01111111000  0000


Q ss_pred             CCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHH
Q 013939          298 PRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQ  377 (433)
Q Consensus       298 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~  377 (433)
                      ..++.          .+      .  .     ..++       +           +  ..+...|+|++..++.+.++++
T Consensus       628 ~~~~~----------~~------~--~-----~~~~-------l-----------k--~il~~tp~tv~d~tp~~~v~~~  664 (696)
T KOG0475|consen  628 SPSAV----------AG------I--P-----SRLD-------L-----------K--DILDMTPFTVTDLTPMETVVDL  664 (696)
T ss_pred             Ccccc----------CC------C--C-----CCcC-------c-----------e--eeccCCcccccccCcHHHHHHH
Confidence            00000          00      0  0     0000       0           1  2256789999999999999999


Q ss_pred             HHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHH
Q 013939          378 MLSHRATHVWVTEDESDDVLVGVVGYADILVAVT  411 (433)
Q Consensus       378 m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~  411 (433)
                      .-+-+++.+-|..+   |++.|+||..|+|+...
T Consensus       665 F~~lg~~~~~v~~~---G~l~Giitkkd~l~~~r  695 (696)
T KOG0475|consen  665 FRKLGLRQILVTKN---GILLGIITKKDCLRHTR  695 (696)
T ss_pred             HHhhCceEEEEccC---CeeEeeeehHHHHHhhc
Confidence            99999999998666   99999999999998753

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=95.74  E-value=0.1  Score=56.80  Aligned_cols=107  Identities=18%  Similarity=0.254  Sum_probs=76.8

Q ss_pred             hcCCCCeEEEcCC-ccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhc--C--CCc---
Q 013939           14 TVGKPELAEFYET-ETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAK--S--DCL---   85 (433)
Q Consensus        14 ~~~k~~lVtv~~~-~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~--~--~~l---   85 (433)
                      ++..+.|+.++.+ .|++|...+|.+...+..||+-++.           .++++|+++-+|+...+..  +  +..   
T Consensus       552 ~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~-----------sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~  620 (696)
T KOG0475|consen  552 CRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSED-----------SQRLVGFVLRRNLFLAILNARKIQSFIVTT  620 (696)
T ss_pred             hcCchhheeccccceeHHHHHHHHhhcccCCceEEEccc-----------cceeEEEEchHHHHHHHhhhccccccceec
Confidence            3444578888888 9999999999999999999986543           4799999999999886652  1  110   


Q ss_pred             --c--hH-Hhhc---CC--cchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeee
Q 013939           86 --E--DQ-DKAM---KT--PVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPK  134 (433)
Q Consensus        86 --~--~~-~~~l---~~--pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~  134 (433)
                        .  ++ +.+.   ..  ..+++|..+   ++++.-.++..-++.+|. =|++...|.+
T Consensus       621 ~~~f~~~~~~~~~~~~~~~~lk~il~~t---p~tv~d~tp~~~v~~~F~~lg~~~~~v~~  677 (696)
T KOG0475|consen  621 SIYFNDPSPSAVAGIPSRLDLKDILDMT---PFTVTDLTPMETVVDLFRKLGLRQILVTK  677 (696)
T ss_pred             ccccCCCCccccCCCCCCcCceeeccCC---cccccccCcHHHHHHHHHhhCceEEEEcc
Confidence              0  00 0010   11  245666655   788888999999999988 4888887754

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.56  E-value=0.12  Score=52.44  Aligned_cols=51  Identities=20%  Similarity=0.380  Sum_probs=40.6

Q ss_pred             CCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          360 STPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       360 ~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      .++.++.+++++.+.+..+... -..++|||++  ++++|+|++..++.+++..
T Consensus       335 ~~~~~v~~d~~~~~~~~~~~~~-~~p~aVvde~--~r~vG~i~~~~vl~aL~~~  385 (386)
T COG4175         335 DDVLTVDADTPLSEILARIRQA-PCPVAVVDED--GRYVGIISRGELLEALARI  385 (386)
T ss_pred             ccccccCccchHHHHHHHHhcC-CCceeEEcCC--CcEEEEecHHHHHHHHhcC
Confidence            3556777888888877655544 4568999998  9999999999999999764

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=93.67  E-value=0.13  Score=53.64  Aligned_cols=50  Identities=20%  Similarity=0.302  Sum_probs=43.0

Q ss_pred             CCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          359 RSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       359 ~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      .....+++++++|.+++..+.++. +-++|+|+   |+++|+|+..+||.++..
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~---~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       332 EAAPTVINPDTLMRDVLAARHRTG-GAILLVEN---GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             cccCcccCCCCcHHHHHHHHhcCC-CCeEEeeC---CeEEEEEeHHHHHHHHhc
Confidence            346779999999999999888766 45899986   899999999999999864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=91.13  E-value=1.3  Score=49.46  Aligned_cols=51  Identities=25%  Similarity=0.284  Sum_probs=46.6

Q ss_pred             CCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          359 RSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       359 ~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      ...|+-.-+.+||..+=.+.---++||.||++-   |||+|||++.++=+++..
T Consensus       809 DpaPfQLve~TSL~K~HtLFSLLgL~~AYVT~~---GrLvGVValkELRkAie~  859 (931)
T KOG0476|consen  809 DPAPFQLVEGTSLYKVHTLFSLLGLNHAYVTSC---GRLVGVVALKELRKAIEN  859 (931)
T ss_pred             CCCceeeeccchHHHHHHHHHHhccchhhhccc---CcEEEEEEHHHHHHHHHh
Confidence            356788889999999999998899999999998   999999999999999976

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=84.24  E-value=1.6  Score=43.37  Aligned_cols=38  Identities=18%  Similarity=0.249  Sum_probs=33.4

Q ss_pred             CHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHH
Q 013939          370 SLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVA  409 (433)
Q Consensus       370 sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~  409 (433)
                      ...+++..++..+..-+||||++  |+++|+||+.||+..
T Consensus       271 ~~~~~ls~~~~~~~~~~~Vvd~~--g~~~G~vt~~~l~~~  308 (309)
T COG1125         271 VDRDALSDFLARGRSVLPVVDED--GRPLGTVTRADLLDE  308 (309)
T ss_pred             hhHHHHHHHHhcCCceeEEECCC--CcEeeEEEHHHHhhh
Confidence            33448889999999999999998  999999999999864

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=80.32  E-value=2  Score=44.78  Aligned_cols=47  Identities=15%  Similarity=0.256  Sum_probs=40.7

Q ss_pred             CCCeEEEcCCCcHHHHHHhcccCCCeeEEecCCCCCcceEEeecchhhhhhc
Q 013939          220 NPNYSSIEASVPAIEATLKAPGDPSAIAVLEPTSEDQYKIIGEISASKLWKC  271 (433)
Q Consensus       220 ~~~vitv~~~~~v~ea~~~M~~~isavpVVd~~~~g~~klvGiIS~~DL~~~  271 (433)
                      ..++.++++++++.+++..+.+.-..+||+|   +|  +++|+|+..+++..
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~--~~~g~~~~~~~~~~  378 (382)
T TIGR03415       332 EAAPTVINPDTLMRDVLAARHRTGGAILLVE---NG--RIVGVIGDDNIYHA  378 (382)
T ss_pred             cccCcccCCCCcHHHHHHHHhcCCCCeEEee---CC--eEEEEEeHHHHHHH
Confidence            3468899999999999999998667799998   48  99999999999764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	433
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-07
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-05
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	3e-05
3ddj_A	296	CBS domain-containing protein; structural genomics	3e-05
3ddj_A	296	CBS domain-containing protein; structural genomics	4e-04
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	3e-05
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	4e-05
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	9e-05
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	1e-04
1pbj_A	125	Hypothetical protein; structural genomics, domain,	2e-04
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	5e-04
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-04

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 50.7 bits (121), Expect = 3e-07
 Identities = 36/202 (17%), Positives = 60/202 (29%), Gaps = 27/202 (13%)

Query: 8   HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFV 67
           H   DL     +L  F  +  V+ A  A+  +     P+W  K             Q FV
Sbjct: 35  HRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKK------------QSFV 82

Query: 68  GILNSFDIVAFLA---KSDCLEDQDKAMKTPVSQVIVPNNSLLKQ---VDPGTRLIDALE 121
           G+L   D +  L    KS  ++  +       +   V      K    + P   L DA+ 
Sbjct: 83  GMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVS 142

Query: 122 MM-KQGVRRLLVPKSVVWK--------GMSKRFSILYNGKWLKNMDASNSSSNNLIANAN 172
            + +  + RL V                + K   +           + +     +   AN
Sbjct: 143 SLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYAN 202

Query: 173 RPSSSSTTSVRDKFCCLSREDV 194
                +TT V        +  V
Sbjct: 203 IAMVRTTTPVYVALGIFVQHRV 224

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 362 PLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTP 419
            L C +  +L A++ +++      + V ++   DV+ G+V  +DIL A+        P
Sbjct: 275 VLKCYLHETLEAIINRLVEAEVHRLVVVDE--HDVVKGIVSLSDILQALVLTGGEKKP 330

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 74/394 (18%), Positives = 121/394 (30%), Gaps = 139/394 (35%)

Query: 57  ENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRL 116
           E GE  Q ++  IL+ F   AF+   DC + QD   K+ +S+  +  + ++   D     
Sbjct: 10  ETGEH-QYQYKDILSVF-EDAFVDNFDCKDVQD-MPKSILSKEEI--DHIIMSKDA---- 60

Query: 117 IDALEMMKQGVRRLLV-----PKSVVWKGMSKRF--SIL-YNGKWLKNMDASNSSSNNLI 168
                    G  RL        + +V     ++F   +L  N K+L  M          I
Sbjct: 61  -------VSGTLRLFWTLLSKQEEMV-----QKFVEEVLRINYKFL--MSP--------I 98

Query: 169 ANANRPSSSSTT---SVRDKFCC---------LSREDVIRFLIGCLGALAPLPLSSI--- 213
               R  S  T      RD+            +SR      L   L  L P     I   
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 214 -----SSLGVINPNYSSIEASVPAIEATLKAPGDPSAIAVLEPTSEDQYKIIGEISASKL 268
                + +                            A+ V        YK+  ++     
Sbjct: 159 LGSGKTWV----------------------------ALDVC-----LSYKVQCKMDFKIF 185

Query: 269 W----KCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRP 324
           W     C+  +    L  L   + +  ++ N T R   D+S+N  LR +       S + 
Sbjct: 186 WLNLKNCN--SPETVLEMLQ--KLLYQIDPNWTSR--SDHSSNIKLRIH-------SIQA 232

Query: 325 RKFCSRSIGFNPSSPCL-------AASRSPSFGTGRSMYRGRSTPLTCKI--TSSLAAVM 375
                R +   P   CL        A    +F             L+CKI  T+    V 
Sbjct: 233 EL--RRLLKSKPYENCLLVLLNVQNAKAWNAFN------------LSCKILLTTRFKQVT 278

Query: 376 AQMLSHRATHVWV-------TEDESDDVLVGVVG 402
             + +   TH+ +       T DE   +L+  + 
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 17/115 (14%)

Query: 10  VGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGI 69
           V DL +   ++A       +E A+  + +S    IPV        +         +  G+
Sbjct: 17  VKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPV--------LDPMY-----KLHGL 63

Query: 70  LNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK 124
           +++  I+  +   + + + ++  +  V QV+  +   +  +        ALEM  
Sbjct: 64  ISTAMILDGILGLERI-EFERLEEMKVEQVMKQD---IPVLKLEDSFAKALEMTI 114

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 17/109 (15%)

Query: 25  ETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC 84
           +   ++ A+K +       +PV        I ++      + VGI+   + +  LAK+  
Sbjct: 171 KEVRLDQAVKLMLRRGFRRLPV--------IDDDN-----KVVGIVTVVNAIKQLAKAVD 217

Query: 85  LEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALE-MMKQGVRRLLV 132
             D D      V  V+V N   L  +D    +  A   M+ + +  LL+
Sbjct: 218 KLDPDYFYGKVVKDVMVTN---LVTIDELASVNRAAAEMIVKRIGSLLI 263

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 25/110 (22%)

Query: 24  YETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83
           Y T     AI  +       +PV        +  N +      VGI+   + +      D
Sbjct: 107 YNTSDEFTAINIMVTRNFGSLPV--------VDINDKP-----VGIVTEREFLLLYKDLD 153

Query: 84  CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMM-KQGVRRLLV 132
            +      M T V           + +    RL  A+++M ++G RRL V
Sbjct: 154 EIFPVKVFMSTKV-----------QTIYKEVRLDQAVKLMLRRGFRRLPV 192

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 25/109 (22%)

Query: 25  ETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC 84
           +   +    K + E     + V         ++       + VGI+   DIV  + K   
Sbjct: 19  KDAKLNDIAKVMTEKNIGSVIV---------VDGN-----KPVGIITERDIVKAIGK--- 61

Query: 85  LEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMM-KQGVRRLLV 132
                K+++T   + +  +   L  +   + +  AL +M +  +R L V
Sbjct: 62  ----GKSLETKAEEFMTAS---LITIREDSPITGALALMRQFNIRHLPV 103

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 15/114 (13%), Positives = 45/114 (39%), Gaps = 17/114 (14%)

Query: 10  VGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGI 69
           VG   +   ++A       +E A+  + ++    IPV        +  +      R  G+
Sbjct: 16  VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPV--------LDPSY-----RLHGL 62

Query: 70  LNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMM 123
           + +  I+  +   + + + +K  +  V +V++ +   + ++     ++    M+
Sbjct: 63  IGTNMIMNSIFGLERI-EFEKLDQITVEEVMLTD---IPRLHINDPIMKGFGMV 112

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 12/114 (10%), Positives = 44/114 (38%), Gaps = 17/114 (14%)

Query: 10  VGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGI 69
           V    +   ++A       ++ A+  + ++    IPV        +  +      +  G+
Sbjct: 13  VKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPV--------LDTSY-----KLHGL 59

Query: 70  LNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMM 123
           ++   ++  +   + + + ++     V +V+  N   + ++     L+ A+ ++
Sbjct: 60  ISMTMMMDAILGLERI-EFERLETMKVEEVMNRN---IPRLRLDDSLMKAVGLI 109

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 27/204 (13%), Positives = 64/204 (31%), Gaps = 29/204 (14%)

Query: 8   HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFV 67
               D+      L     +  V+ ++  + +++    P+W  KT             RF 
Sbjct: 30  KTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTS------------RFA 77

Query: 68  GILNSFDIVAFLA-------KSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDAL 120
           G+L + D +  +        K + ++         + + +  +      + P   L +A 
Sbjct: 78  GLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEAC 137

Query: 121 EMM-KQGVRRLLV-------PKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANAN 172
             M +    R+ +        + +V   +++   + +     +          +L     
Sbjct: 138 LKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQ 197

Query: 173 RP--SSSSTTSVRDKFCCLSREDV 194
               S   TT V D    L++  V
Sbjct: 198 DNMKSCQMTTPVIDVIQMLTQGRV 221

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 24/109 (22%)

Query: 25  ETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC 84
            T ++E  ++   E+ +    V         ++ G       VGI+ ++D++  +A+ D 
Sbjct: 16  ITASLEDVLRNYVENAKGSSVV---------VKEGVR-----VGIVTTWDVLEAIAEGDD 61

Query: 85  LEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMM-KQGVRRLLV 132
           L +        V +V+  +   L  + P   + +A E M K  V RLLV
Sbjct: 62  LAE------VKVWEVMERD---LVTISPRATIKEAAEKMVKNVVWRLLV 101

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 20/131 (15%), Positives = 45/131 (34%), Gaps = 29/131 (22%)

Query: 10  VGDLTVGK-PELAEFYETETVEAAIKAIGE---STECGIPVWKKKTHVGIIENGEMRQQR 65
           +GDL +     +     T  V   I+ + +   S    +P+        I ENG      
Sbjct: 10  IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVS---SVPI--------IDENG-----Y 53

Query: 66  FVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQV---DPGTRLIDALEM 122
            + +  ++D++  +            +   V + ++  +   + V       +L   ++ 
Sbjct: 54  LINVYEAYDVLGLIK-----GGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDN 108

Query: 123 M-KQGVRRLLV 132
           + K  V R  V
Sbjct: 109 IRKARVHRFFV 119

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 25/131 (19%)

Query: 8   HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFV 67
            V+ D       +A     E ++   + +  +    +PV         +  G +     V
Sbjct: 148 EVIDDYITRDVIVA--TPGERLKDVARTMVRNGFRRLPV---------VSEGRL-----V 191

Query: 68  GILNSFDIVAFLAKSDCLEDQD-----KAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEM 122
           GI+ S D +  L               +     + +++  +   +     G +L    E+
Sbjct: 192 GIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMKRD---VITAKEGDKLKKIAEI 248

Query: 123 M-KQGVRRLLV 132
           M    +  L V
Sbjct: 249 MVTNDIGALPV 259

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	433
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	100.0
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	100.0
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	100.0
3ddj_A	296	CBS domain-containing protein; structural genomics	100.0
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	100.0
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	100.0
3ddj_A	296	CBS domain-containing protein; structural genomics	99.89
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.88
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.86
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.86
4esy_A	170	CBS domain containing membrane protein; structural	99.84
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.82
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.81
4esy_A	170	CBS domain containing membrane protein; structural	99.75
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.74
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.73
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.73
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.72
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.72
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.72
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.71
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.71
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.71
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.7
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.7
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.69
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.69
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.68
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.68
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.68
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.68
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.67
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.67
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.66
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.66
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.66
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.66
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.66
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.66
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.66
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.66
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.65
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.65
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.65
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.65
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.65
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.64
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.64
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.64
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.64
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.64
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.64
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.64
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.64
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.64
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.63
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.63
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.63
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.63
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.63
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.63
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.63
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.63
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.63
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.62
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.62
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.62
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.62
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.62
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.62
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.62
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.62
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.61
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.61
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.61
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.61
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.6
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.6
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.6
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.6
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.6
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.59
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.59
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.59
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.59
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.58
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.58
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.58
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.57
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.56
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.55
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.55
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.55
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.54
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.53
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.52
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.49
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.45
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.45
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.44
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.41
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.41
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.39
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.39
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.36
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.33
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.33
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.32
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.31
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.26
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.26
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.23
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.22
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.21
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.19
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.15
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.12
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.11
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.0
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.99
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.96
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.96
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.92
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.85
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.77
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.74
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.62
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.58

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=100.00  E-value=3e-36  Score=296.66  Aligned_cols=282  Identities=17%  Similarity=0.219  Sum_probs=218.3

Q ss_pred             ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhc---
Q 013939            5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAK---   81 (433)
Q Consensus         5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~---   81 (433)
                      |..++|+|+|..+.++++++.++|+.+|+++|.+++++++||||.+            .++++|++|..|++.++..   
T Consensus        27 l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~------------~~~lvGilt~~Dl~~~l~~~~~   94 (323)
T 3t4n_C           27 LNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSK------------TSRFAGLLTTTDFINVIQYYFS   94 (323)
T ss_dssp             HHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETT------------TTEEEEEECHHHHHHHHHHHHH
T ss_pred             HHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCC------------CCeEEEEEEHHHHHHHHHHHHc
Confidence            4789999999988899999999999999999999999999999965            3699999999999997642   


Q ss_pred             -CCCcchHHhhcCCcchhcc------ccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccc
Q 013939           82 -SDCLEDQDKAMKTPVSQVI------VPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKW  153 (433)
Q Consensus        82 -~~~l~~~~~~l~~pV~~Im------~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~  153 (433)
                       +............++.++|      +.   +++++.+++++.+|++.|. ++++++||.++++..              
T Consensus        95 ~~~~~~~l~~~~~~~v~~i~~~~~~~~~---~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~--------------  157 (323)
T 3t4n_C           95 NPDKFELVDKLQLDGLKDIERALGVDQL---DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEET--------------  157 (323)
T ss_dssp             CGGGGGGGGGCBHHHHHHHHHHTTC-------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTT--------------
T ss_pred             CcchhHHHHHHHHHHHHHHHHHhCCCCC---CceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCC--------------
Confidence             1111111111113344444      43   4899999999999999999 899999998764310              


Q ss_pred             cccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccC-cCCCeEEEcCCCcH
Q 013939          154 LKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGV-INPNYSSIEASVPA  232 (433)
Q Consensus       154 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~i-m~~~vitv~~~~~v  232 (433)
                                                 +...++|+||+.|+++++..+... ......+++++++ |+++++++.+++++
T Consensus       158 ---------------------------~~~~l~Givt~~di~~~l~~~~~~-~~~~~~~v~~~~~~m~~~~~~v~~~~~~  209 (323)
T 3t4n_C          158 ---------------------------HREIVVSVLTQYRILKFVALNCRE-THFLKIPIGDLNIITQDNMKSCQMTTPV  209 (323)
T ss_dssp             ---------------------------CCEEEEEEEEHHHHHHHHHHHCGG-GGGCCSBGGGTTCSBCTTCCCBCTTSBH
T ss_pred             ---------------------------CccceEEEecHHHHHHHHHhcCCc-hhhhhCcHHHcCCCCCCCcEEECCCCcH
Confidence                                       111379999999999999765433 3345567877543 56889999999999


Q ss_pred             HHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCCCCcccccccc
Q 013939          233 IEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLR  311 (433)
Q Consensus       233 ~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~  311 (433)
                      .+|+++|.+ +++++||||+  +|  +++|+||.+|+++... ...+.....++.+++..                    
T Consensus       210 ~~~~~~m~~~~~~~~pVvd~--~~--~~~Giit~~dl~~~~~-~~~~~~~~~~v~~~m~~--------------------  264 (323)
T 3t4n_C          210 IDVIQMLTQGRVSSVPIIDE--NG--YLINVYEAYDVLGLIK-GGIYNDLSLSVGEALMR--------------------  264 (323)
T ss_dssp             HHHHHHHHHHTCSEEEEECT--TC--BEEEEEETTHHHHHHH-TTHHHHTTSBHHHHGGG--------------------
T ss_pred             HHHHHHHHHcCCCEEEEECC--CC--eEEEEEeHHHHHHHHh-hchhhhccCCHHHHHhh--------------------
Confidence            999999999 9999999998  78  9999999999987641 11112223333333320                    


Q ss_pred             cccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeC
Q 013939          312 ENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTED  391 (433)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~  391 (433)
                        .                                         .....++++|+++++|.+|+++|.++++|++||||+
T Consensus       265 --~-----------------------------------------~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  301 (323)
T 3t4n_C          265 --R-----------------------------------------SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD  301 (323)
T ss_dssp             --S-----------------------------------------CTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECT
T ss_pred             --c-----------------------------------------cccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECC
Confidence              0                                         001348899999999999999999999999999998


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhC
Q 013939          392 ESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       392 ~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      +  |+++||||++||++++..+
T Consensus       302 ~--~~l~Giit~~Dil~~l~~~  321 (323)
T 3t4n_C          302 V--GRLVGVLTLSDILKYILLG  321 (323)
T ss_dssp             T--SBEEEEEEHHHHHHHHHHC
T ss_pred             C--CcEEEEEEHHHHHHHHHhc
Confidence            7  9999999999999999864

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=100.00  E-value=1.4e-34  Score=277.08  Aligned_cols=267  Identities=18%  Similarity=0.261  Sum_probs=208.7

Q ss_pred             hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC-----
Q 013939            9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD-----   83 (433)
Q Consensus         9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~-----   83 (433)
                      ++++++. +++++++++++|+.+|+++|.+++++++||+|++            .++++|++|..||+.++....     
T Consensus         4 ~v~~~i~-~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~------------~~~~~Givt~~di~~~~~~~~~~~~~   70 (280)
T 3kh5_A            4 RVMKIAQ-NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAG------------NNKVVGIITSMDIVDFMGGGSKYNLI   70 (280)
T ss_dssp             BGGGTSC-CSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTT------------TCBEEEEEEHHHHHHHTTTSGGGHHH
T ss_pred             hHHHHhc-CCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECC------------CCeEEEEEEHHHHHHHhcccchhhhh
Confidence            3566653 4689999999999999999999999999999963            279999999999999875321     


Q ss_pred             ---CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccc
Q 013939           84 ---CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDA  159 (433)
Q Consensus        84 ---~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~  159 (433)
                         ...+....++.+|+++|.++   ++++++++++.+|++.|. ++++++||.++++                      
T Consensus        71 ~~~~~~~~~~~~~~~v~~im~~~---~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~----------------------  125 (280)
T 3kh5_A           71 REKHERNFLAAINEPVREIMEEN---VITLKENADIDEAIETFLTKNVGGAPIVNDEN----------------------  125 (280)
T ss_dssp             HTTSTTCHHHHTTSBGGGTSBCS---CCCEETTCBHHHHHHHHHHTTCSEEEEECTTC----------------------
T ss_pred             hhccccchhHHhhhhHHHhcCCC---CEEECCCCCHHHHHHHHHhCCCCEEEEEcCCC----------------------
Confidence               11112344578999999965   899999999999999999 7899999986432                      


Q ss_pred             cCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhc
Q 013939          160 SNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKA  239 (433)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M  239 (433)
                                              +.+|++|+.|+++++.+...     ...++++  +|+++++++.+++++.+|++.|
T Consensus       126 ------------------------~~~Givt~~dl~~~~~~~~~-----~~~~v~~--~m~~~~~~v~~~~~l~~~~~~~  174 (280)
T 3kh5_A          126 ------------------------QLISLITERDVIRALLDKID-----ENEVIDD--YITRDVIVATPGERLKDVARTM  174 (280)
T ss_dssp             ------------------------BEEEEEEHHHHHHHHGGGSC-----TTCBSGG--GCBCSCCCBCTTCBHHHHHHHH
T ss_pred             ------------------------EEEEEEEHHHHHHHHhhcCC-----CCCCHHH--HhCCCCeEECCCCcHHHHHHHH
Confidence                                    46899999999999865322     1235665  6889999999999999999999


Q ss_pred             cc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCCCCcccccccccccccCC
Q 013939          240 PG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNG  318 (433)
Q Consensus       240 ~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  318 (433)
                      .+ +++.+||++   +|  +++|+||.+|++......  +.+..+..+++..                   .  ..    
T Consensus       175 ~~~~~~~~~Vv~---~~--~~~Givt~~dl~~~~~~~--~~~~~~~~~~~~~-------------------~--~~----  222 (280)
T 3kh5_A          175 VRNGFRRLPVVS---EG--RLVGIITSTDFIKLLGSD--WAFNHMQTGNVRE-------------------I--TN----  222 (280)
T ss_dssp             HHHTCSEEEEEE---TT--EEEEEEEHHHHHHHHTSH--HHHHHHHSCCTHH-------------------H--HH----
T ss_pred             HHcCCCEEEEEE---CC--EEEEEEEHHHHHHHHhhh--hhhhhhcccchhh-------------------h--hC----
Confidence            99 999999994   68  999999999998764211  1111100000000                   0  00    


Q ss_pred             CCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEE
Q 013939          319 VGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLV  398 (433)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lv  398 (433)
                                 ..+                 +     ..|+.++++|+++++|.+|+++|.++++|++||+|++  |+++
T Consensus       223 -----------~~v-----------------~-----~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~--g~~~  267 (280)
T 3kh5_A          223 -----------VRM-----------------E-----EIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDEN--LRIK  267 (280)
T ss_dssp             -----------CBH-----------------H-----HHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTT--CBEE
T ss_pred             -----------CcH-----------------H-----HHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC--CeEE
Confidence                       000                 0     2357899999999999999999999999999999997  8999


Q ss_pred             EEEeHHHHHHHHH
Q 013939          399 GVVGYADILVAVT  411 (433)
Q Consensus       399 GIVs~~DIL~~i~  411 (433)
                      ||||++||+++++
T Consensus       268 Givt~~dil~~la  280 (280)
T 3kh5_A          268 GIITEKDVLKYFA  280 (280)
T ss_dssp             EEEEHHHHGGGGC
T ss_pred             EEEeHHHHHHhhC
Confidence            9999999998763

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=100.00  E-value=3.4e-34  Score=283.18  Aligned_cols=300  Identities=15%  Similarity=0.175  Sum_probs=217.0

Q ss_pred             ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcC-C
Q 013939            5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKS-D   83 (433)
Q Consensus         5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~-~   83 (433)
                      |..++|+|+|...++++++++++|+.+|+++|.+++++++||+|.+            .++++|+|+..||+.++... .
T Consensus        19 l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~------------~~~~vGiv~~~Dl~~~~~~~~~   86 (334)
T 2qrd_G           19 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE------------ANKFAGLLTMADFVNVIKYYYQ   86 (334)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETT------------TTEEEEEECHHHHHHHHHHHHH
T ss_pred             HhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCC------------CCeEEEEEEHHHHHHHHHHHhh
Confidence            4559999999766789999999999999999999999999999964            27999999999999977421 0


Q ss_pred             ---CcchHHhhcCCcch-------hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhcccc
Q 013939           84 ---CLEDQDKAMKTPVS-------QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGK  152 (433)
Q Consensus        84 ---~l~~~~~~l~~pV~-------~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~  152 (433)
                         ........-+.+++       ++|..+ ..++++.+++++.+|++.|. ++++++||.++.+.             +
T Consensus        87 ~~~~~~~~~~~~~~~~~~i~~~l~~im~~~-~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~-------------~  152 (334)
T 2qrd_G           87 SSSFPEAIAEIDKFRLLGLREVERKIGAIP-PETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGE-------------T  152 (334)
T ss_dssp             HCSCGGGGGGGGSCBHHHHHHHHHHHTCSC-SSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETT-------------T
T ss_pred             ccCCccHHHHHhhhchhhHHHHHHhhccCC-CceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCC-------------c
Confidence               00000011133333       346543 12389999999999999999 79999999865320             0


Q ss_pred             ccccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCccccc-CcCCCeEEEcCCCc
Q 013939          153 WLKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLG-VINPNYSSIEASVP  231 (433)
Q Consensus       153 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~-im~~~vitv~~~~~  231 (433)
                                                  +.+..+||||+.|+++++..+.... .+...+++++. +|.++++++.++++
T Consensus       153 ----------------------------~~~~~~Givt~~dl~~~~~~~~~~~-~~~~~~v~~l~~~m~~~~~~v~~~~~  203 (334)
T 2qrd_G          153 ----------------------------GSEMIVSVLTQYRILKFISMNCKET-AMLRVPLNQMTIGTWSNLATASMETK  203 (334)
T ss_dssp             ----------------------------TEEEEEEEEEHHHHHHHHHHHCGGG-GGCCCBGGGSSCSBCSSCCCBCTTSB
T ss_pred             ----------------------------CccceEEEeeHHHHHHHHHhhccch-hhhhCcHHHhCCcccCCceEECCCCc
Confidence                                        0113689999999999997543221 22346677754 58899999999999


Q ss_pred             HHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCCCCccccccc
Q 013939          232 AIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTL  310 (433)
Q Consensus       232 v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~  310 (433)
                      +.+|+++|.+ +++.+||+|+  +|  +++|+||.+|++...... .......++.+++.                    
T Consensus       204 ~~~~~~~m~~~~~~~~~Vvd~--~~--~~~Giit~~dl~~~~~~~-~~~~~~~~v~~~m~--------------------  258 (334)
T 2qrd_G          204 VYDVIKMLAEKNISAVPIVNS--EG--TLLNVYESVDVMHLIQDG-DYSNLDLSVGEALL--------------------  258 (334)
T ss_dssp             HHHHHHHHHHHTCSEEEEECT--TC--BEEEEEETHHHHHHHTTS-CGGGGGSBHHHHHT--------------------
T ss_pred             HHHHHHHHHHcCCcEEEEEcC--CC--cEEEEEEHHHHHHHhhcc-ccccccCcHHHHHh--------------------
Confidence            9999999999 9999999997  78  999999999998653100 00000111111110                    


Q ss_pred             ccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEe
Q 013939          311 RENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTE  390 (433)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD  390 (433)
                                         ...                       . ...++++|+++++|.+|+.+|.+++++++||||
T Consensus       259 -------------------~~~-----------------------~-~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  295 (334)
T 2qrd_G          259 -------------------KRP-----------------------A-NFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD  295 (334)
T ss_dssp             -------------------TCC-----------------------T-TCCCCCEECTTCBHHHHHHHHHHSCCCEEEEEC
T ss_pred             -------------------ccc-----------------------c-cCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEC
Confidence                               000                       0 015889999999999999999999999999999


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHhCCCCcCCCCCCcccccc
Q 013939          391 DESDDVLVGVVGYADILVAVTKQPAALTPANRTYEGFAT  429 (433)
Q Consensus       391 ~~~~~~lvGIVs~~DIL~~i~~~~~~~~~~~~~~~~~~~  429 (433)
                      ++  |+++||||++||++++........+.......|.+
T Consensus       296 ~~--g~l~Giit~~dil~~~~~~~~~~~~~~~~~~~~~~  332 (334)
T 2qrd_G          296 EN--LKLEGILSLADILNYIIYDKTTTPGVPEQTDNFES  332 (334)
T ss_dssp             TT--CBEEEEEEHHHHHHHHHSCCC---------CCCCC
T ss_pred             CC--CeEEEEEeHHHHHHHHHhccccCCCCCccccchhh
Confidence            87  99999999999999999887765554455555543

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=100.00  E-value=8.3e-34  Score=275.87  Aligned_cols=265  Identities=15%  Similarity=0.180  Sum_probs=214.0

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      .+...+|+|+|.  ++++++++++|+.+|+++|.+++++++||+| +              +++|++|..||+.++....
T Consensus        16 ~~~~~~V~dim~--~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-~--------------~l~GivT~~Di~~~~~~~~   78 (296)
T 3ddj_A           16 YFQGMNIETLMI--KNPPILSKEDRLGSAFKKINEGGIGRIIVAN-E--------------KIEGLLTTRDLLSTVESYC   78 (296)
T ss_dssp             TTCCSSGGGTCE--ESCCEECTTSBHHHHHHHTTGGGCCEEEEES-S--------------SEEEEEEHHHHHGGGTTCC
T ss_pred             hhcccCHHHhcc--CCCcEECCCccHHHHHHHHHHCCCceEEEEC-C--------------eEEEEEeHHHHHHHhcccc
Confidence            345678999996  5789999999999999999999999999998 3              7999999999999886431


Q ss_pred             ----CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhcccccccccc
Q 013939           84 ----CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMD  158 (433)
Q Consensus        84 ----~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~  158 (433)
                          ...+..+..+.+|+++|.++   ++++.+++++.+|++.|. ++++++||.+++                      
T Consensus        79 ~~~~~~~~~~~~~~~~v~~im~~~---~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~----------------------  133 (296)
T 3ddj_A           79 KDSCSQGDLYHISTTPIIDYMTPN---PVTVYNTSDEFTAINIMVTRNFGSLPVVDIN----------------------  133 (296)
T ss_dssp             ---CCHHHHHHHHTSBGGGTSEES---CCCEETTSCHHHHHHHHHHHTCSEEEEECTT----------------------
T ss_pred             cccccchhhHHHhcccHHHhccCC---CEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC----------------------
Confidence                11122334578999999865   899999999999999999 899999998543                      


Q ss_pred             ccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHh
Q 013939          159 ASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLK  238 (433)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~  238 (433)
                                              ++++|+||..|+++++.+.      ....++++  +|+++++++.+++++.+|+++
T Consensus       134 ------------------------~~lvGivt~~dl~~~~~~~------~~~~~v~~--~m~~~~~~v~~~~~l~~~~~~  181 (296)
T 3ddj_A          134 ------------------------DKPVGIVTEREFLLLYKDL------DEIFPVKV--FMSTKVQTIYKEVRLDQAVKL  181 (296)
T ss_dssp             ------------------------SCEEEEEEHHHHGGGGGGS------CCCCBHHH--HSBCSCCCEETTSBHHHHHHH
T ss_pred             ------------------------CcEEEEEeHHHHHHhhhcc------cccccHHH--hhcCCCeEECCCCCHHHHHHH
Confidence                                    2468999999999877432      12346666  688999999999999999999


Q ss_pred             ccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCCCCcccccccccccccC
Q 013939          239 APG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVN  317 (433)
Q Consensus       239 M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  317 (433)
                      |.+ +++.+||+|+  +|  +++|+||.+|++....    ..+..+....+                        ..   
T Consensus       182 m~~~~~~~~~Vvd~--~~--~~~Givt~~dl~~~~~----~~~~~~~~~~~------------------------~~---  226 (296)
T 3ddj_A          182 MLRRGFRRLPVIDD--DN--KVVGIVTVVNAIKQLA----KAVDKLDPDYF------------------------YG---  226 (296)
T ss_dssp             HHHHTCSEEEEECT--TS--CEEEEEEHHHHHHHHH----HHHHHTCTHHH------------------------HT---
T ss_pred             HHHcCCCEEEEEcC--CC--EEEEEEEHHHHHHHHH----HHHhhcChhhh------------------------cC---
Confidence            999 9999999997  78  9999999999987641    11111000000                        00   


Q ss_pred             CCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeE
Q 013939          318 GVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVL  397 (433)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~l  397 (433)
                                  ..+                 +     ..|..++++|+++++|.+|+.+|.+++++++||||++  |++
T Consensus       227 ------------~~v-----------------~-----~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~--g~~  270 (296)
T 3ddj_A          227 ------------KVV-----------------K-----DVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKD--NTI  270 (296)
T ss_dssp             ------------CBH-----------------H-----HHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTT--SCE
T ss_pred             ------------cCH-----------------H-----HHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCC--CeE
Confidence                        000                 0     2257799999999999999999999999999999987  999


Q ss_pred             EEEEeHHHHHHHHHhC
Q 013939          398 VGVVGYADILVAVTKQ  413 (433)
Q Consensus       398 vGIVs~~DIL~~i~~~  413 (433)
                      +||||++||++++..+
T Consensus       271 ~Giit~~Dil~~l~~~  286 (296)
T 3ddj_A          271 RGIITERDLLIALHHI  286 (296)
T ss_dssp             EEEEEHHHHHHHHHHH
T ss_pred             EEEEcHHHHHHHHHHH
Confidence            9999999999999864

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=100.00  E-value=8e-34  Score=280.48  Aligned_cols=280  Identities=20%  Similarity=0.274  Sum_probs=217.5

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      +|...+|+|+|...++++++++++|+.+|+++|.+++++++||+|.+            .++++|+|+..|++.++....
T Consensus        31 ~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~------------~~~~vGivt~~Dll~~l~~~~   98 (330)
T 2v8q_E           31 FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK------------KQSFVGMLTITDFINILHRYY   98 (330)
T ss_dssp             HHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT------------TTEEEEEEEHHHHHHHHHHHH
T ss_pred             HHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCC------------CCeEEEEEEHHHHHHHHHHHH
Confidence            45667899999656889999999999999999999999999999964            268999999999998765310


Q ss_pred             --------Ccch-HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccc
Q 013939           84 --------CLED-QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKW  153 (433)
Q Consensus        84 --------~l~~-~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~  153 (433)
                              .+.. .-+.+..+++++|..+   ++++.+++++.+|++.|. ++++++||.+++.                
T Consensus        99 ~~~~~~~~~l~~~~~~~~~~~~~~im~~~---~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~----------------  159 (330)
T 2v8q_E           99 KSALVQIYELEEHKIETWREVYLQDSFKP---LVCISPNASLFDAVSSLIRNKIHRLPVIDPES----------------  159 (330)
T ss_dssp             HHHTTTCCCGGGCBHHHHHHHHSSSSCCC---CCCBCTTSBHHHHHHHHHHHTCSCEEEECTTT----------------
T ss_pred             hccccchhHHhhccHHHHHHHHhhcccCC---ceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCC----------------
Confidence                    0000 0011123455678754   999999999999999999 8999999986411                


Q ss_pred             cccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCC--CCCCCCCCcccccCcC-CCeEEEcCCC
Q 013939          154 LKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGA--LAPLPLSSISSLGVIN-PNYSSIEASV  230 (433)
Q Consensus       154 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~--l~~l~~~tV~~L~im~-~~vitv~~~~  230 (433)
                                                   ++.+|+||+.|+++++.++...  ...+..++++++.+|+ ++++++.+++
T Consensus       160 -----------------------------~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~v~~~~  210 (330)
T 2v8q_E          160 -----------------------------GNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTT  210 (330)
T ss_dssp             -----------------------------CCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCSSCCCEETTC
T ss_pred             -----------------------------CcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHhcccCcCCceEECCCC
Confidence                                         2468999999999999764332  2334456777777787 7899999999


Q ss_pred             cHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCCCCcccccc
Q 013939          231 PAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANST  309 (433)
Q Consensus       231 ~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~  309 (433)
                      ++.+|++.|.+ +++.+||+|+  +|  +++|+||.+|++....... +.....++.+++.                   
T Consensus       211 ~l~~~~~~m~~~~~~~~~Vvd~--~~--~l~Giit~~dl~~~~~~~~-~~~~~~~v~~~~~-------------------  266 (330)
T 2v8q_E          211 PVYVALGIFVQHRVSALPVVDE--KG--RVVDIYSKFDVINLAAEKT-YNNLDVSVTKALQ-------------------  266 (330)
T ss_dssp             BHHHHHHHHHHHCCSEEEEECT--TS--BEEEEEEGGGTGGGGGSSC-CCCCSSBHHHHGG-------------------
T ss_pred             CHHHHHHHHHHcCCCeEEEECC--CC--cEEEEEEHHHHHHHHhccc-cccccCcHHHHHh-------------------
Confidence            99999999999 9999999997  78  9999999999987541000 0000001111100                   


Q ss_pred             cccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEE
Q 013939          310 LRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVT  389 (433)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VV  389 (433)
                             .            +                         ..|+.++++|+++++|.+++.+|.+++++++|||
T Consensus       267 -------~------------~-------------------------~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv  302 (330)
T 2v8q_E          267 -------H------------R-------------------------SHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVV  302 (330)
T ss_dssp             -------G------------C-------------------------CSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             -------c------------c-------------------------ccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEE
Confidence                   0            0                         1146799999999999999999999999999999


Q ss_pred             eCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          390 EDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       390 D~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      |++  |+++||||+.||++++...
T Consensus       303 d~~--g~l~Giit~~Dil~~~~~~  324 (330)
T 2v8q_E          303 DEH--DVVKGIVSLSDILQALVLT  324 (330)
T ss_dssp             CTT--SBEEEEEEHHHHHHHHHSS
T ss_pred             cCC--CcEEEEEeHHHHHHHHHhh
Confidence            987  9999999999999999865

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=100.00  E-value=3.7e-33  Score=268.36  Aligned_cols=275  Identities=15%  Similarity=0.155  Sum_probs=185.1

Q ss_pred             hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939            9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ   88 (433)
Q Consensus         9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~   88 (433)
                      +|+|+|.  ++++++++++|+.+|+++|.++++.++||+|.+             ++++|+++..||+..+.        
T Consensus         2 ~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~-------------~~~~Giv~~~dl~~~~~--------   58 (282)
T 2yzq_A            2 RVKTIMT--QNPVTITLPATRNYALELFKKYKVRSFPVVNKE-------------GKLVGIISVKRILVNPD--------   58 (282)
T ss_dssp             BHHHHSE--ESCCCEESSCC------------CCEEEEECTT-------------CCEEEEEESSCC-------------
T ss_pred             chHHhcc--CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC-------------CcEEEEEEHHHHHhhhc--------
Confidence            5789886  678999999999999999999999999999863             79999999999986532        


Q ss_pred             HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccccc
Q 013939           89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNL  167 (433)
Q Consensus        89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  167 (433)
                          +.+|+++|...   ++++++++++.+|++.|. ++++++||.++++                              
T Consensus        59 ----~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~------------------------------  101 (282)
T 2yzq_A           59 ----EEQLAMLVKRD---VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKG------------------------------  101 (282)
T ss_dssp             ---------CCCBSC---CCEEETTSBHHHHHHHHHHHTCSEEEEECTTS------------------------------
T ss_pred             ----cCCHHHHcCCC---CcEECCCCcHHHHHHHHHHcCCCEEEEEcCCC------------------------------
Confidence                36899999864   889999999999999999 7999999986432                              


Q ss_pred             ccccCCCCCCCcCCCCCeEEEeeHHHHHH-HHHHccCCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCe
Q 013939          168 IANANRPSSSSTTSVRDKFCCLSREDVIR-FLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSA  245 (433)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~-~l~~~~~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isa  245 (433)
                                      +.+|+||+.|+++ ++.+. ..   ....++++  +|+++++++.+++++.+|++.|.+ ++++
T Consensus       102 ----------------~~~Giit~~di~~~~~~~~-~~---~~~~~v~~--~m~~~~~~v~~~~~l~~~~~~~~~~~~~~  159 (282)
T 2yzq_A          102 ----------------KPVGILTVGDIIRRYFAKS-EK---YKGVEIEP--YYQRYVSIVWEGTPLKAALKALLLSNSMA  159 (282)
T ss_dssp             ----------------CEEEEEEHHHHHHHTTTTC-SG---GGGCBSTT--TSBSCCCCEETTSBHHHHHHHHHTCSSSE
T ss_pred             ----------------EEEEEEEHHHHHHHHHhcc-CC---cccCcHHH--HhCCCCEEECCCCCHHHHHHHHHHcCCcE
Confidence                            4689999999999 77532 11   12345554  688899999999999999999999 8999


Q ss_pred             eEEecCCCCCcceEEeecchhhhhhcchhHHHHH--HhhccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCC
Q 013939          246 IAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWA--LANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTR  323 (433)
Q Consensus       246 vpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~--~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  323 (433)
                      +||+|+  +|  +++|+||.+|++..........  .+.+. ..+ .++. ...+..+..        ...         
T Consensus       160 l~Vvd~--~~--~~~Giit~~dl~~~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~~~~--------~~~---------  215 (282)
T 2yzq_A          160 LPVVDS--EG--NLVGIVDETDLLRDSEIVRIMKSTELAAS-SEE-EWIL-ESHPTLLFE--------KFE---------  215 (282)
T ss_dssp             EEEECT--TS--CEEEEEEGGGGGGCGGGCC-------------------------------------------------
T ss_pred             EEEEcC--CC--eEEEEEEHHHHhhhhhhhhhhccchhhhh-hhh-hhhc-ccchHHHHh--------Hhh---------
Confidence            999997  78  9999999999984321000000  00000 000 0000 000000000        000         


Q ss_pred             CccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeH
Q 013939          324 PRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGY  403 (433)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~  403 (433)
                       .......+                 +     ..|+.++++|+|++++.+|+++|.+++++++||||++  |+++||||+
T Consensus       216 -~~~~~~~v-----------------~-----~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~lvGiit~  270 (282)
T 2yzq_A          216 -LQLPNKPV-----------------A-----EIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGE--GDLIGLIRD  270 (282)
T ss_dssp             ----CCCBG-----------------G-----GTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETT--TEEEEEEEH
T ss_pred             -hhhccCCH-----------------H-----HhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCC--CCEEEEEeH
Confidence             00000001                 1     3468899999999999999999999999999999987  899999999


Q ss_pred             HHHHHHHHhCC
Q 013939          404 ADILVAVTKQP  414 (433)
Q Consensus       404 ~DIL~~i~~~~  414 (433)
                      +||++++.+.+
T Consensus       271 ~Dil~~~~~~~  281 (282)
T 2yzq_A          271 FDLLKVLVKSK  281 (282)
T ss_dssp             HHHGGGGCC--
T ss_pred             HHHHHHHHhhc
Confidence            99999887654

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.89  E-value=3.5e-23  Score=200.87  Aligned_cols=188  Identities=14%  Similarity=0.171  Sum_probs=153.5

Q ss_pred             cCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccc
Q 013939           92 MKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIAN  170 (433)
Q Consensus        92 l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~  170 (433)
                      ...+|+++|..+   ++++++++++.+|++.|. ++++++||.+ +                                  
T Consensus        18 ~~~~V~dim~~~---~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-~----------------------------------   59 (296)
T 3ddj_A           18 QGMNIETLMIKN---PPILSKEDRLGSAFKKINEGGIGRIIVAN-E----------------------------------   59 (296)
T ss_dssp             CCSSGGGTCEES---CCEECTTSBHHHHHHHTTGGGCCEEEEES-S----------------------------------
T ss_pred             cccCHHHhccCC---CcEECCCccHHHHHHHHHHCCCceEEEEC-C----------------------------------
Confidence            458899999965   999999999999999999 7899999976 2                                  


Q ss_pred             cCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccC------CCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CC
Q 013939          171 ANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLG------ALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DP  243 (433)
Q Consensus       171 ~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~------~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~i  243 (433)
                                   +++||+|+.|+++++.....      .+......++++  +|+++++++.+++++.+|+++|.+ ++
T Consensus        60 -------------~l~GivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~--im~~~~~~v~~~~~~~~a~~~m~~~~~  124 (296)
T 3ddj_A           60 -------------KIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIID--YMTPNPVTVYNTSDEFTAINIMVTRNF  124 (296)
T ss_dssp             -------------SEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGG--TSEESCCCEETTSCHHHHHHHHHHHTC
T ss_pred             -------------eEEEEEeHHHHHHHhcccccccccchhhHHHhcccHHH--hccCCCEEEcCCCCHHHHHHHHHHcCC
Confidence                         35899999999998743211      011122456776  699999999999999999999999 99


Q ss_pred             CeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCC
Q 013939          244 SAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTR  323 (433)
Q Consensus       244 savpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  323 (433)
                      +++||+|+  +|  +++|++|.+|++.....               .    .                 ..         
T Consensus       125 ~~lpVvd~--~~--~lvGivt~~dl~~~~~~---------------~----~-----------------~~---------  155 (296)
T 3ddj_A          125 GSLPVVDI--ND--KPVGIVTEREFLLLYKD---------------L----D-----------------EI---------  155 (296)
T ss_dssp             SEEEEECT--TS--CEEEEEEHHHHGGGGGG---------------S----C-----------------CC---------
T ss_pred             CEEEEEcC--CC--cEEEEEeHHHHHHhhhc---------------c----c-----------------cc---------
Confidence            99999997  78  99999999999865300               0    0                 00         


Q ss_pred             CccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeH
Q 013939          324 PRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGY  403 (433)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~  403 (433)
                            ..+                 +     ..|..++++|.+++++.+++.+|.+++++++||+|++  |+++|+||.
T Consensus       156 ------~~v-----------------~-----~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~--~~~~Givt~  205 (296)
T 3ddj_A          156 ------FPV-----------------K-----VFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD--NKVVGIVTV  205 (296)
T ss_dssp             ------CBH-----------------H-----HHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT--SCEEEEEEH
T ss_pred             ------ccH-----------------H-----HhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC--CEEEEEEEH
Confidence                  000                 0     2257789999999999999999999999999999987  999999999


Q ss_pred             HHHHHHHH
Q 013939          404 ADILVAVT  411 (433)
Q Consensus       404 ~DIL~~i~  411 (433)
                      .||++++.
T Consensus       206 ~dl~~~~~  213 (296)
T 3ddj_A          206 VNAIKQLA  213 (296)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999987

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.88  E-value=1.3e-22  Score=193.78  Aligned_cols=187  Identities=17%  Similarity=0.242  Sum_probs=155.9

Q ss_pred             chhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcc
Q 013939            7 YHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLE   86 (433)
Q Consensus         7 ~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~   86 (433)
                      ..+++|+|.  ++++++++++++.+|++.|.+++++++||+|..             ++++|++|..|+++++.....  
T Consensus        83 ~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-------------~~~~Givt~~dl~~~~~~~~~--  145 (280)
T 3kh5_A           83 NEPVREIME--ENVITLKENADIDEAIETFLTKNVGGAPIVNDE-------------NQLISLITERDVIRALLDKID--  145 (280)
T ss_dssp             TSBGGGTSB--CSCCCEETTCBHHHHHHHHHHTTCSEEEEECTT-------------CBEEEEEEHHHHHHHHGGGSC--
T ss_pred             hhhHHHhcC--CCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCC-------------CEEEEEEEHHHHHHHHhhcCC--
Confidence            457888886  578999999999999999999999999999863             799999999999998764311  


Q ss_pred             hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccc
Q 013939           87 DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSN  165 (433)
Q Consensus        87 ~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~  165 (433)
                           ...+|+++|..+   ++++++++++.+|++.|. ++++++||. +++                            
T Consensus       146 -----~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~----------------------------  188 (280)
T 3kh5_A          146 -----ENEVIDDYITRD---VIVATPGERLKDVARTMVRNGFRRLPVV-SEG----------------------------  188 (280)
T ss_dssp             -----TTCBSGGGCBCS---CCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETT----------------------------
T ss_pred             -----CCCCHHHHhCCC---CeEECCCCcHHHHHHHHHHcCCCEEEEE-ECC----------------------------
Confidence                 135899999865   899999999999999999 799999998 322                            


Q ss_pred             ccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHcc-------CCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHh
Q 013939          166 NLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCL-------GALAPLPLSSISSLGVINPNYSSIEASVPAIEATLK  238 (433)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~-------~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~  238 (433)
                                        +.+|+||..|+++++.+..       +........++++  +|+++++++.+++++.+|+++
T Consensus       189 ------------------~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~m~~~~~~v~~~~~l~~a~~~  248 (280)
T 3kh5_A          189 ------------------RLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEE--IMKRDVITAKEGDKLKKIAEI  248 (280)
T ss_dssp             ------------------EEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHHCBHHH--HSBSSCCCBCTTCBHHHHHHH
T ss_pred             ------------------EEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhCCcHHH--HhcCCCEEECCCCCHHHHHHH
Confidence                              4589999999999985321       1111113345655  688999999999999999999


Q ss_pred             ccc-CCCeeEEecCCCCCcceEEeecchhhhhhc
Q 013939          239 APG-DPSAIAVLEPTSEDQYKIIGEISASKLWKC  271 (433)
Q Consensus       239 M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~  271 (433)
                      |.+ ++..+||||+  +|  +++|+||.+|+++.
T Consensus       249 m~~~~~~~l~Vvd~--~g--~~~Givt~~dil~~  278 (280)
T 3kh5_A          249 MVTNDIGALPVVDE--NL--RIKGIITEKDVLKY  278 (280)
T ss_dssp             HHHHTCCEEEEECT--TC--BEEEEEEHHHHGGG
T ss_pred             HHHCCCCEEEEECC--CC--eEEEEEeHHHHHHh
Confidence            999 9999999998  78  99999999999865

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.86  E-value=1e-21  Score=188.44  Aligned_cols=190  Identities=22%  Similarity=0.218  Sum_probs=149.5

Q ss_pred             chhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHH-HhhcCCCc
Q 013939            7 YHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVA-FLAKSDCL   85 (433)
Q Consensus         7 ~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~-~l~~~~~l   85 (433)
                      ..+++|++.  ++++++++++++.+|++.|.++++..+||+|.+             ++++|++|..|+++ ++.++.  
T Consensus        59 ~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~-------------~~~~Giit~~di~~~~~~~~~--  121 (282)
T 2yzq_A           59 EEQLAMLVK--RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSK-------------GKPVGILTVGDIIRRYFAKSE--  121 (282)
T ss_dssp             -----CCCB--SCCCEEETTSBHHHHHHHHHHHTCSEEEEECTT-------------SCEEEEEEHHHHHHHTTTTCS--
T ss_pred             cCCHHHHcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CEEEEEEEHHHHHHHHHhccC--
Confidence            456778775  567999999999999999999999999999963             78999999999999 765421  


Q ss_pred             chHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccc
Q 013939           86 EDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSS  164 (433)
Q Consensus        86 ~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~  164 (433)
                          ...+.+|+++|..+   ++++++++++.+|++.|. ++++++||+++++                           
T Consensus       122 ----~~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~---------------------------  167 (282)
T 2yzq_A          122 ----KYKGVEIEPYYQRY---VSIVWEGTPLKAALKALLLSNSMALPVVDSEG---------------------------  167 (282)
T ss_dssp             ----GGGGCBSTTTSBSC---CCCEETTSBHHHHHHHHHTCSSSEEEEECTTS---------------------------
T ss_pred             ----CcccCcHHHHhCCC---CEEECCCCCHHHHHHHHHHcCCcEEEEEcCCC---------------------------
Confidence                11257899999754   899999999999999999 7899999986432                           


Q ss_pred             cccccccCCCCCCCcCCCCCeEEEeeHHHHH------HHHHHcc----C------------CC----CCCCCCCcccccC
Q 013939          165 NNLIANANRPSSSSTTSVRDKFCCLSREDVI------RFLIGCL----G------------AL----APLPLSSISSLGV  218 (433)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi------~~l~~~~----~------------~l----~~l~~~tV~~L~i  218 (433)
                                         +++|+||..|++      +++..+.    +            .+    ......++++  +
T Consensus       168 -------------------~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i  226 (282)
T 2yzq_A          168 -------------------NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAE--I  226 (282)
T ss_dssp             -------------------CEEEEEEGGGGGGCGGGCC--------------------------------CCCBGGG--T
T ss_pred             -------------------eEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHH--h
Confidence                               468999999999      6663100    0            00    1223556765  7


Q ss_pred             cCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcc
Q 013939          219 INPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCD  272 (433)
Q Consensus       219 m~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~  272 (433)
                      |+++++++.+++++.+|+++|.+ ++..+||||+  +|  +++|+||.+|+++..
T Consensus       227 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~--~lvGiit~~Dil~~~  277 (282)
T 2yzq_A          227 MTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG--EG--DLIGLIRDFDLLKVL  277 (282)
T ss_dssp             CBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET--TT--EEEEEEEHHHHGGGG
T ss_pred             cCCCCceeCCCCCHHHHHHHHHHcCcceeEEECC--CC--CEEEEEeHHHHHHHH
Confidence            99999999999999999999999 9999999997  78  999999999998753

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.86  E-value=2e-21  Score=190.77  Aligned_cols=196  Identities=15%  Similarity=0.160  Sum_probs=154.6

Q ss_pred             hhHhhhhc----CCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            8 HVVGDLTV----GKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         8 ~~v~DL~~----~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      ..+.+++.    ..++++++++++++.+|++.|.+++++++||+|.++..        ...+++|++|..|++.++....
T Consensus       108 ~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~--------~~~~l~Givt~~di~~~l~~~~  179 (323)
T 3t4n_C          108 DGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEET--------HREIVVSVLTQYRILKFVALNC  179 (323)
T ss_dssp             HHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTT--------CCEEEEEEEEHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCC--------CccceEEEecHHHHHHHHHhcC
Confidence            34555552    24788999999999999999999999999999964210        0014999999999999986431


Q ss_pred             CcchHHhhcCCcchhc---cccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccc
Q 013939           84 CLEDQDKAMKTPVSQV---IVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDA  159 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~I---m~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~  159 (433)
                      ..   ....+.+|+++   |..+   ++++.+++++.+|++.|. ++++++||+++++                      
T Consensus       180 ~~---~~~~~~~v~~~~~~m~~~---~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~----------------------  231 (323)
T 3t4n_C          180 RE---THFLKIPIGDLNIITQDN---MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG----------------------  231 (323)
T ss_dssp             GG---GGGCCSBGGGTTCSBCTT---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC----------------------
T ss_pred             Cc---hhhhhCcHHHcCCCCCCC---cEEECCCCcHHHHHHHHHHcCCCEEEEECCCC----------------------
Confidence            11   23456899999   7654   999999999999999999 8999999986432                      


Q ss_pred             cCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCC------CeEEEcCCCcHH
Q 013939          160 SNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINP------NYSSIEASVPAI  233 (433)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~------~vitv~~~~~v~  233 (433)
                                              +++|+||..|+++++.+...   .....++++  +|++      +++++.+++++.
T Consensus       232 ------------------------~~~Giit~~dl~~~~~~~~~---~~~~~~v~~--~m~~~~~~~~~~~~v~~~~~l~  282 (323)
T 3t4n_C          232 ------------------------YLINVYEAYDVLGLIKGGIY---NDLSLSVGE--ALMRRSDDFEGVYTCTKNDKLS  282 (323)
T ss_dssp             ------------------------BEEEEEETTHHHHHHHTTHH---HHTTSBHHH--HGGGSCTTCCCCEEECTTCBHH
T ss_pred             ------------------------eEEEEEeHHHHHHHHhhchh---hhccCCHHH--HHhhccccCCCCEEECCCCCHH
Confidence                                    46899999999999864221   012345665  5776      799999999999


Q ss_pred             HHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcc
Q 013939          234 EATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCD  272 (433)
Q Consensus       234 ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~  272 (433)
                      +|+++|.+ ++..+||||+  +|  +++|+||.+|+++..
T Consensus       283 ~~~~~m~~~~~~~l~Vvd~--~~--~l~Giit~~Dil~~l  318 (323)
T 3t4n_C          283 TIMDNIRKARVHRFFVVDD--VG--RLVGVLTLSDILKYI  318 (323)
T ss_dssp             HHHHHHHHSCCCEEEEECT--TS--BEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEECC--CC--cEEEEEEHHHHHHHH
Confidence            99999999 9999999997  78  999999999998754

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.84  E-value=5.1e-21  Score=172.08  Aligned_cols=151  Identities=15%  Similarity=0.201  Sum_probs=105.4

Q ss_pred             CCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhh
Q 013939          211 SSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFV  289 (433)
Q Consensus       211 ~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~  289 (433)
                      .+|++  +|+++++++.+++++.+|+++|.+ +++++||||+  +|  +++|+||.+|+++............     +.
T Consensus        18 ~~V~d--iM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~--~g--~lvGiit~~Dll~~~~~~~~~~~~~-----~~   86 (170)
T 4esy_A           18 VPIRD--ILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ--NG--HLVGIITESDFLRGSIPFWIYEASE-----IL   86 (170)
T ss_dssp             SBGGG--GCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECT--TS--CEEEEEEGGGGGGGTCCTTHHHHHH-----HH
T ss_pred             CCHHH--hcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC--Cc--cEEEEEEHHHHHHHHhhccccchhh-----hh
Confidence            35665  799999999999999999999999 9999999998  88  9999999999987642111110000     00


Q ss_pred             hccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCC
Q 013939          290 MGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITS  369 (433)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~  369 (433)
                      .   .. .+    . .....+.+..               ....               ++     ..|+++++||+|++
T Consensus        87 ~---~~-~~----~-~~~~~~~~~~---------------~~~~---------------v~-----~im~~~~~tv~~~~  122 (170)
T 4esy_A           87 S---RA-IP----A-PEVEHLFETG---------------RKLT---------------AS-----AVMTQPVVTAAPED  122 (170)
T ss_dssp             T---TT-SC----H-HHHHHHHHHH---------------TTCB---------------HH-----HHCBCCSCCBCTTS
T ss_pred             h---hc-cc----h-hhHHhhhccc---------------cccc---------------hh-----hhcccCcccCCcch
Confidence            0   00 00    0 0000000000               0000               00     34789999999999


Q ss_pred             CHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCCCcCC
Q 013939          370 SLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTP  419 (433)
Q Consensus       370 sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~~~~~  419 (433)
                      +|.+|+.+|.++++||+||+|+   |+++||||++||++++..+....-|
T Consensus       123 ~l~~a~~~m~~~~~~~lpVvd~---g~lvGivt~~Dil~~l~~~~~~~dp  169 (170)
T 4esy_A          123 SVGSIADQMRRHGIHRIPVVQD---GVPVGIVTRRDLLKLLLLEESPVDP  169 (170)
T ss_dssp             BHHHHHHHHHHTTCSEEEEEET---TEEEEEEEHHHHTTTSCCC------
T ss_pred             hHHHHHHHHHHcCCcEEEEEEC---CEEEEEEEHHHHHHHHHhccCCCCC
Confidence            9999999999999999999995   8999999999999999887654433

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.82  E-value=5.1e-20  Score=181.49  Aligned_cols=189  Identities=14%  Similarity=0.038  Sum_probs=148.8

Q ss_pred             CCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcc
Q 013939           17 KPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPV   96 (433)
Q Consensus        17 k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV   96 (433)
                      .++++++++++++.+|++.|.++++..+||+|.+            .++++|+||..||+.++............+..++
T Consensus       125 ~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~------------~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v  192 (330)
T 2v8q_E          125 FKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPE------------SGNTLYILTHKRILKFLKLFITEFPKPEFMSKSL  192 (330)
T ss_dssp             CCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTT------------TCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBH
T ss_pred             cCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCC------------CCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCH
Confidence            4778999999999999999999999999999962            1789999999999998864211000122345678


Q ss_pred             hhc--cccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCC
Q 013939           97 SQV--IVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANR  173 (433)
Q Consensus        97 ~~I--m~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~  173 (433)
                      +++  |..  .+++++.+++++.+|++.|. ++++++||+++++                                    
T Consensus       193 ~~~~v~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~------------------------------------  234 (330)
T 2v8q_E          193 EELQIGTY--ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG------------------------------------  234 (330)
T ss_dssp             HHHTCSBC--SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTS------------------------------------
T ss_pred             HHhcccCc--CCceEECCCCCHHHHHHHHHHcCCCeEEEECCCC------------------------------------
Confidence            776  541  24899999999999999999 7899999986432                                    


Q ss_pred             CCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccc----cCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEE
Q 013939          174 PSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSL----GVINPNYSSIEASVPAIEATLKAPG-DPSAIAV  248 (433)
Q Consensus       174 ~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L----~im~~~vitv~~~~~v~ea~~~M~~-~isavpV  248 (433)
                                +++|+||..|+++++.+..  +. ....+++++    ..|+++++++.+++++.+|+++|.+ ++..+||
T Consensus       235 ----------~l~Giit~~dl~~~~~~~~--~~-~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V  301 (330)
T 2v8q_E          235 ----------RVVDIYSKFDVINLAAEKT--YN-NLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVV  301 (330)
T ss_dssp             ----------BEEEEEEGGGTGGGGGSSC--CC-CCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEE
T ss_pred             ----------cEEEEEEHHHHHHHHhccc--cc-cccCcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEE
Confidence                      4689999999999775321  11 113455552    1235889999999999999999999 9999999


Q ss_pred             ecCCCCCcceEEeecchhhhhhcc
Q 013939          249 LEPTSEDQYKIIGEISASKLWKCD  272 (433)
Q Consensus       249 Vd~~~~g~~klvGiIS~~DL~~~~  272 (433)
                      ||+  +|  +++|+||.+|+.+..
T Consensus       302 vd~--~g--~l~Giit~~Dil~~~  321 (330)
T 2v8q_E          302 VDE--HD--VVKGIVSLSDILQAL  321 (330)
T ss_dssp             ECT--TS--BEEEEEEHHHHHHHH
T ss_pred             EcC--CC--cEEEEEeHHHHHHHH
Confidence            998  78  999999999998653

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.81  E-value=2.5e-19  Score=176.58  Aligned_cols=186  Identities=15%  Similarity=0.154  Sum_probs=149.4

Q ss_pred             hcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCe----EEEEEeHHHHHHHhhcCCCcchHH
Q 013939           14 TVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQR----FVGILNSFDIVAFLAKSDCLEDQD   89 (433)
Q Consensus        14 ~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~----~VGivt~~DIl~~l~~~~~l~~~~   89 (433)
                      |....+++++++++++.+|++.|.++++..+||+|..            +++    ++|++|..||+.++....  . ..
T Consensus       113 m~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~------------~~~~~~~~~Givt~~dl~~~~~~~~--~-~~  177 (334)
T 2qrd_G          113 GAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVD------------GETGSEMIVSVLTQYRILKFISMNC--K-ET  177 (334)
T ss_dssp             TCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEE------------TTTTEEEEEEEEEHHHHHHHHHHHC--G-GG
T ss_pred             ccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCC------------CCcCccceEEEeeHHHHHHHHHhhc--c-ch
Confidence            3333445999999999999999999999999999864            133    999999999999886421  1 01


Q ss_pred             hhcCCcchhc---cccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccc
Q 013939           90 KAMKTPVSQV---IVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSN  165 (433)
Q Consensus        90 ~~l~~pV~~I---m~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~  165 (433)
                      ...+.+|+++   |..+   ++++++++++.+|++.|. ++++++||+++++                            
T Consensus       178 ~~~~~~v~~l~~~m~~~---~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~----------------------------  226 (334)
T 2qrd_G          178 AMLRVPLNQMTIGTWSN---LATASMETKVYDVIKMLAEKNISAVPIVNSEG----------------------------  226 (334)
T ss_dssp             GGCCCBGGGSSCSBCSS---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC----------------------------
T ss_pred             hhhhCcHHHhCCcccCC---ceEECCCCcHHHHHHHHHHcCCcEEEEEcCCC----------------------------
Confidence            2346889995   7754   899999999999999999 7899999986432                            


Q ss_pred             ccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCC------CeEEEcCCCcHHHHHHhc
Q 013939          166 NLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINP------NYSSIEASVPAIEATLKA  239 (433)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~------~vitv~~~~~v~ea~~~M  239 (433)
                                        +++|+||..|+++++.+...   .....++++  +|++      +++++.+++++.+|+++|
T Consensus       227 ------------------~~~Giit~~dl~~~~~~~~~---~~~~~~v~~--~m~~~~~~~~~~~~v~~~~~l~~~~~~m  283 (334)
T 2qrd_G          227 ------------------TLLNVYESVDVMHLIQDGDY---SNLDLSVGE--ALLKRPANFDGVHTCRATDRLDGIFDAI  283 (334)
T ss_dssp             ------------------BEEEEEETHHHHHHHTTSCG---GGGGSBHHH--HHTTCCTTCCCCCEECTTCBHHHHHHHH
T ss_pred             ------------------cEEEEEEHHHHHHHhhcccc---ccccCcHHH--HHhcccccCCCCEEECCCCcHHHHHHHH
Confidence                              46899999999998854210   112345554  5773      899999999999999999


Q ss_pred             cc-CCCeeEEecCCCCCcceEEeecchhhhhhcc
Q 013939          240 PG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCD  272 (433)
Q Consensus       240 ~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~  272 (433)
                      .+ ++..+||||+  +|  +++|+||.+|+.+..
T Consensus       284 ~~~~~~~l~Vvd~--~g--~l~Giit~~dil~~~  313 (334)
T 2qrd_G          284 KHSRVHRLFVVDE--NL--KLEGILSLADILNYI  313 (334)
T ss_dssp             HHSCCCEEEEECT--TC--BEEEEEEHHHHHHHH
T ss_pred             HHcCCCEEEEECC--CC--eEEEEEeHHHHHHHH
Confidence            99 9999999997  78  999999999998653

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.75  E-value=4e-19  Score=159.66  Aligned_cols=131  Identities=18%  Similarity=0.218  Sum_probs=107.9

Q ss_pred             ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC-
Q 013939            5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD-   83 (433)
Q Consensus         5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~-   83 (433)
                      +..-+|+|+|.  ++++++++++|+.+|+++|.+++++++||+|.+             ++++|+||..||++++.... 
T Consensus        15 l~~~~V~diM~--~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-------------g~lvGiit~~Dll~~~~~~~~   79 (170)
T 4esy_A           15 IRQVPIRDILT--SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN-------------GHLVGIITESDFLRGSIPFWI   79 (170)
T ss_dssp             HHTSBGGGGCC--SCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT-------------SCEEEEEEGGGGGGGTCCTTH
T ss_pred             HcCCCHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC-------------ccEEEEEEHHHHHHHHhhccc
Confidence            44567899985  789999999999999999999999999999964             79999999999988654320 


Q ss_pred             ---------Ccc------hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhh
Q 013939           84 ---------CLE------DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSI  147 (433)
Q Consensus        84 ---------~l~------~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~  147 (433)
                               ...      ......+.+|+++|+++   +++++++++|.+|+++|. +|+|++||++++           
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g-----------  145 (170)
T 4esy_A           80 YEASEILSRAIPAPEVEHLFETGRKLTASAVMTQP---VVTAAPEDSVGSIADQMRRHGIHRIPVVQDG-----------  145 (170)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCC---SCCBCTTSBHHHHHHHHHHTTCSEEEEEETT-----------
T ss_pred             cchhhhhhhccchhhHHhhhccccccchhhhcccC---cccCCcchhHHHHHHHHHHcCCcEEEEEECC-----------
Confidence                     000      01223467999999975   999999999999999999 899999998642           


Q ss_pred             hccccccccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          148 LYNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       148 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                                          +++||||++||++++..
T Consensus       146 ------------------------------------~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A          146 ------------------------------------VPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             ------------------------------------EEEEEEEHHHHTTTSCC
T ss_pred             ------------------------------------EEEEEEEHHHHHHHHHh
Confidence                                                35899999999998854

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.74  E-value=9.5e-18  Score=143.78  Aligned_cols=122  Identities=20%  Similarity=0.224  Sum_probs=98.1

Q ss_pred             CCCCcccccCcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhcc
Q 013939          209 PLSSISSLGVIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLS  284 (433)
Q Consensus       209 ~~~tV~~L~im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~  284 (433)
                      ...++++  +|+  .+++++.+++++.+|+++|.+ +++++||+|+  + |  +++|+||.+||+......         
T Consensus         4 ~~~~v~~--iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~--~~~Givt~~dl~~~~~~~---------   68 (130)
T 3i8n_A            4 QDVPVTQ--VMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSE--QKD--NIIGFVHRLELFKMQQSG---------   68 (130)
T ss_dssp             ---CCTT--TSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESS--STT--CEEEECCHHHHHHHHHTT---------
T ss_pred             CcCCHhh--CCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC--cEEEEEEHHHHHHHHhcC---------
Confidence            3456666  688  458899999999999999999 9999999997  6 7  999999999998653100         


Q ss_pred             chhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeE
Q 013939          285 AGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLT  364 (433)
Q Consensus       285 ~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it  364 (433)
                                .  +    .         .                 .+      .                ..| +++++
T Consensus        69 ----------~--~----~---------~-----------------~v------~----------------~~m-~~~~~   83 (130)
T 3i8n_A           69 ----------S--G----Q---------K-----------------QL------G----------------AVM-RPIQV   83 (130)
T ss_dssp             ----------T--T----T---------S-----------------BH------H----------------HHS-EECCE
T ss_pred             ----------C--C----c---------C-----------------CH------H----------------HHh-cCCcC
Confidence                      0  0    0         0                 00      0                113 36889


Q ss_pred             ecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          365 CKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       365 ~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      |++++++.+++.+|.+++++++||+|++  |+++||||+.||++++..
T Consensus        84 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~--g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A           84 VLNNTALPKVFDQMMTHRLQLALVVDEY--GTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             EETTSCHHHHHHHHHHHTCCEEEEECTT--SCEEEEEEHHHHHHHHHT
T ss_pred             cCCCCcHHHHHHHHHHcCCeEEEEEcCC--CCEEEEEEHHHHHHHHcC
Confidence            9999999999999999999999999987  999999999999999874

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.73  E-value=1.3e-17  Score=145.89  Aligned_cols=123  Identities=14%  Similarity=0.136  Sum_probs=103.5

Q ss_pred             CCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhc
Q 013939          208 LPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANL  283 (433)
Q Consensus       208 l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l  283 (433)
                      +...++++  +|++  +++++.+++++.+|+++|.+ +++++||+|+  + |  +++|+||.+||+......        
T Consensus        20 l~~~~v~d--iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~--~lvGivt~~dl~~~~~~~--------   85 (148)
T 3lv9_A           20 FEEKKIRE--IMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK--NKD--DILGFVHIRDLYNQKINE--------   85 (148)
T ss_dssp             GGTCBGGG--TSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS--STT--SEEEEEEHHHHHHHHHHH--------
T ss_pred             cCCCCHHH--ccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC--cEEEEEEHHHHHHHHhcC--------
Confidence            44567776  6998  89999999999999999999 9999999997  6 7  999999999998653100        


Q ss_pred             cchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCe
Q 013939          284 SAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPL  363 (433)
Q Consensus       284 ~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  363 (433)
                                                   ..               ..+                 +     ..| .+++
T Consensus        86 -----------------------------~~---------------~~v-----------------~-----~~m-~~~~   98 (148)
T 3lv9_A           86 -----------------------------NK---------------IEL-----------------E-----EIL-RDII   98 (148)
T ss_dssp             -----------------------------SC---------------CCG-----------------G-----GTC-BCCE
T ss_pred             -----------------------------CC---------------ccH-----------------H-----Hhc-CCCe
Confidence                                         00               000                 0     225 7899


Q ss_pred             EecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          364 TCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       364 t~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      +|++++++.+|+.+|.+++++++||+|++  |+++||||+.||++++..+
T Consensus        99 ~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~--g~~~Giit~~dil~~l~~~  146 (148)
T 3lv9_A           99 YISENLTIDKALERIRKEKLQLAIVVDEY--GGTSGVVTIEDILEEIVGE  146 (148)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEECTT--SSEEEEEEHHHHHHHHHHT
T ss_pred             EECCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEEHHHHHHHHhCc
Confidence            99999999999999999999999999998  9999999999999999764

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.73  E-value=1.7e-17  Score=149.57  Aligned_cols=124  Identities=18%  Similarity=0.150  Sum_probs=101.7

Q ss_pred             CCCCCcccccCcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhc
Q 013939          208 LPLSSISSLGVIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANL  283 (433)
Q Consensus       208 l~~~tV~~L~im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l  283 (433)
                      +...++++  +|+  .+++++.+++++.+|+++|.+ +++++||+|+  + |  +++|+||.+||+.....         
T Consensus        39 l~~~~v~d--iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~--~lvGivt~~dl~~~~~~---------  103 (172)
T 3lhh_A           39 LDERTISS--LMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRN--NVD--DMVGIISAKQLLSESIA---------  103 (172)
T ss_dssp             ----CTTT--TSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESS--STT--SEEEEEEHHHHHHHHHT---------
T ss_pred             cCCCCHHH--hCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC--eEEEEEEHHHHHHHHhh---------
Confidence            34556665  688  689999999999999999999 9999999997  6 7  99999999999865300         


Q ss_pred             cchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCe
Q 013939          284 SAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPL  363 (433)
Q Consensus       284 ~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  363 (433)
                                +                  ..               ..+                 +     ..| .+++
T Consensus       104 ----------~------------------~~---------------~~v-----------------~-----~im-~~~~  117 (172)
T 3lhh_A          104 ----------G------------------ER---------------LEL-----------------V-----DLV-KNCN  117 (172)
T ss_dssp             ----------T------------------CC---------------CCG-----------------G-----GGC-BCCE
T ss_pred             ----------c------------------Cc---------------ccH-----------------H-----HHh-cCCe
Confidence                      0                  00               001                 0     225 7899


Q ss_pred             EecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCC
Q 013939          364 TCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQP  414 (433)
Q Consensus       364 t~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~  414 (433)
                      +|.+++++.+|+.+|.+++++++||||++  |+++||||+.||++++....
T Consensus       118 ~v~~~~~l~~a~~~m~~~~~~~~pVvd~~--g~lvGiit~~Dil~~l~~~~  166 (172)
T 3lhh_A          118 FVPNSLSGMELLEHFRTTGSQMVFVVDEY--GDLKGLVTLQDMMDALTGEF  166 (172)
T ss_dssp             EEETTCCHHHHHHHHHHHTCSEEEEECTT--SCEEEEEEHHHHHHHHHTTC
T ss_pred             EeCCCCCHHHHHHHHHHcCCeEEEEEeCC--CCEEEEeeHHHHHHHHhCCC
Confidence            99999999999999999999999999997  99999999999999998643

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.72  E-value=1.6e-17  Score=143.15  Aligned_cols=136  Identities=20%  Similarity=0.263  Sum_probs=101.1

Q ss_pred             CCCCccccc-CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccch
Q 013939          209 PLSSISSLG-VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAG  286 (433)
Q Consensus       209 ~~~tV~~L~-im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~  286 (433)
                      ..++++++. +|.++++++.+++++.+|+++|.+ +++.+||+|+  +|  +++|+||.+|++...... .......++.
T Consensus         6 ~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~--~~~Givt~~dl~~~~~~~-~~~~~~~~v~   80 (144)
T 2nyc_A            6 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE--NG--YLINVYEAYDVLGLIKGG-IYNDLSLSVG   80 (144)
T ss_dssp             GGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT--TC--BEEEEEEHHHHHHHHHTC-----CCSBHH
T ss_pred             hhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcC--CC--cEEEEEcHHHHHHHhccc-ccccCCccHH
Confidence            356677755 577889999999999999999999 9999999997  78  999999999998653100 0000011111


Q ss_pred             hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939          287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK  366 (433)
Q Consensus       287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~  366 (433)
                      +++.                      .                 .                        .....++++|.
T Consensus        81 ~~m~----------------------~-----------------~------------------------~~~~~~~~~v~   97 (144)
T 2nyc_A           81 EALM----------------------R-----------------R------------------------SDDFEGVYTCT   97 (144)
T ss_dssp             HHHH----------------------H-----------------C------------------------C------CEEC
T ss_pred             HHHh----------------------c-----------------C------------------------ccccCCCeEEC
Confidence            1110                      0                 0                        00013788999


Q ss_pred             CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCC
Q 013939          367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQP  414 (433)
Q Consensus       367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~  414 (433)
                      +++++.+++.+|.+++++++||+|++  |+++||||..||++++..++
T Consensus        98 ~~~~l~~~~~~m~~~~~~~l~Vvd~~--g~~~Giit~~dil~~l~~~~  143 (144)
T 2nyc_A           98 KNDKLSTIMDNIRKARVHRFFVVDDV--GRLVGVLTLSDILKYILLGS  143 (144)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTT--SBEEEEEEHHHHHHHHHHC-
T ss_pred             CCCcHHHHHHHHHHCCCCEEEEECCC--CCEEEEEEHHHHHHHHHhcc
Confidence            99999999999999999999999987  99999999999999998653

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.72  E-value=9e-18  Score=143.37  Aligned_cols=120  Identities=18%  Similarity=0.172  Sum_probs=96.5

Q ss_pred             CCcccccCcCCC--eEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhccch
Q 013939          211 SSISSLGVINPN--YSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLSAG  286 (433)
Q Consensus       211 ~tV~~L~im~~~--vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~  286 (433)
                      .++++  +|++.  ++++.+++++.+|+++|.+ +++++||+|+  + |  +++|+||.+||++....            
T Consensus         3 ~~v~d--iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~--~~vGivt~~dl~~~~~~------------   64 (127)
T 3nqr_A            3 QRVRD--IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD--HIEGILMAKDLLPFMRS------------   64 (127)
T ss_dssp             CBHHH--HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT--CEEEEEEGGGGGGGGST------------
T ss_pred             cCHHH--hcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC--cEEEEEEHHHHHHHHhc------------
Confidence            34555  68854  9999999999999999999 9999999997  6 7  99999999999865300            


Q ss_pred             hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939          287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK  366 (433)
Q Consensus       287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~  366 (433)
                             ..                 ..               ..+      .                ..|. ++++|+
T Consensus        65 -------~~-----------------~~---------------~~v------~----------------~~m~-~~~~v~   82 (127)
T 3nqr_A           65 -------DA-----------------EA---------------FSM------D----------------KVLR-TAVVVP   82 (127)
T ss_dssp             -------TC-----------------CC---------------CCH------H----------------HHCB-CCCEEE
T ss_pred             -------cC-----------------CC---------------CCH------H----------------HHcC-CCeEEC
Confidence                   00                 00               000      0                1133 478999


Q ss_pred             CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      +++++.+++.+|.+++++++||+|++  |+++||||+.||++++..
T Consensus        83 ~~~~l~~a~~~m~~~~~~~lpVvd~~--g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           83 ESKRVDRMLKEFRSQRYHMAIVIDEF--GGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             TTCBHHHHHHHHHHTTCCEEEEECTT--SCEEEEEEHHHHHHHC--
T ss_pred             CCCcHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEEHHHHHHHHhC
Confidence            99999999999999999999999987  999999999999998764

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.72  E-value=2.7e-17  Score=146.93  Aligned_cols=135  Identities=18%  Similarity=0.239  Sum_probs=110.0

Q ss_pred             ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC
Q 013939            5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC   84 (433)
Q Consensus         5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~   84 (433)
                      |.-.++.++|.-..+++++++++|+.+|+++|.+++++++||+|..             ++++|+||..|+++++.....
T Consensus        12 ~l~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~-------------~~lvGiit~~Di~~~~~~~~~   78 (156)
T 3k6e_A           12 FLLGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE-------------KQFVGTIGLRDIMAYQMEHDL   78 (156)
T ss_dssp             HHHTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC--------------CBEEEEEEHHHHHHHHHHHTC
T ss_pred             HhhccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCC-------------CcEEEEEEecchhhhhhhccc
Confidence            4456788888766799999999999999999999999999999863             799999999999998875321


Q ss_pred             cchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHHcCCCeEEeeecCcccccccchhhhccccccccccccCccc
Q 013939           85 LEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSS  164 (433)
Q Consensus        85 l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~  164 (433)
                      .  .....+.+|+++|.++   ++++++++++.+|+++|.+. +.+||+++.                            
T Consensus        79 ~--~~~~~~~~v~~im~~~---~~~v~~~~~l~~~~~~m~~~-~~lpVVd~~----------------------------  124 (156)
T 3k6e_A           79 S--QEIMADTDIVHMTKTD---VAVVSPDFTITEVLHKLVDE-SFLPVVDAE----------------------------  124 (156)
T ss_dssp             C--HHHHTTSBGGGTCBCS---CCCBCTTCCHHHHHHHTTTS-SEEEEECTT----------------------------
T ss_pred             c--cccccccCHHHhhcCC---ceecccccHHHHHHHHHHHc-CCeEEEecC----------------------------
Confidence            1  2344578999999965   99999999999999999832 348887543                            


Q ss_pred             cccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCC
Q 013939          165 NNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGA  204 (433)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~  204 (433)
                                        |+++||||++||++.+......
T Consensus       125 ------------------g~l~GiiT~~Dil~~~~~~~~~  146 (156)
T 3k6e_A          125 ------------------GIFQGIITRKSILKAVNALLHD  146 (156)
T ss_dssp             ------------------SBEEEEEEHHHHHHHHHHHSCC
T ss_pred             ------------------CEEEEEEEHHHHHHHHHHHhcc
Confidence                              2568999999999998654443

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.71  E-value=2.8e-17  Score=140.83  Aligned_cols=119  Identities=16%  Similarity=0.200  Sum_probs=98.0

Q ss_pred             CCcccccCcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhccch
Q 013939          211 SSISSLGVIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLSAG  286 (433)
Q Consensus       211 ~tV~~L~im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~  286 (433)
                      .++++  +|+  ++++++.+++++.+|+++|.+ +++++||+|+  + |  +++|+||.+||++....            
T Consensus         5 ~~v~d--iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~--~~~Givt~~dl~~~~~~------------   66 (129)
T 3jtf_A            5 RTVAD--IMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYED--DRD--NIIGILLAKDLLRYMLE------------   66 (129)
T ss_dssp             CBHHH--HCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESS--STT--CEEEEEEGGGGGGGGTC------------
T ss_pred             CCHHH--hCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcC--CCC--cEEEEEEHHHHHhHhcc------------
Confidence            45665  688  679999999999999999999 9999999997  5 7  99999999999865300            


Q ss_pred             hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939          287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK  366 (433)
Q Consensus       287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~  366 (433)
                                                ..  .             .+      .                ..| .+++++.
T Consensus        67 --------------------------~~--~-------------~v------~----------------~~m-~~~~~v~   82 (129)
T 3jtf_A           67 --------------------------PA--L-------------DI------R----------------SLV-RPAVFIP   82 (129)
T ss_dssp             --------------------------TT--S-------------CG------G----------------GGC-BCCCEEE
T ss_pred             --------------------------CC--c-------------CH------H----------------HHh-CCCeEeC
Confidence                                      00  0             00      0                113 3588999


Q ss_pred             CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      +++++.+++.+|.+++++++||+|++  |+++||||+.||++++..+
T Consensus        83 ~~~~l~~~~~~m~~~~~~~~pVvd~~--g~~~Giit~~Dil~~l~ge  127 (129)
T 3jtf_A           83 EVKRLNVLLREFRASRNHLAIVIDEH--GGISGLVTMEDVLEQIVGD  127 (129)
T ss_dssp             TTCBHHHHHHHHHTSSCCEEEEECC---CCEEEEEEHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEEHHHHHHHHhCC
Confidence            99999999999999999999999997  9999999999999998753

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.71  E-value=1.4e-17  Score=144.16  Aligned_cols=122  Identities=15%  Similarity=0.175  Sum_probs=97.4

Q ss_pred             CCcccccCcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhccch
Q 013939          211 SSISSLGVIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLSAG  286 (433)
Q Consensus       211 ~tV~~L~im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~  286 (433)
                      .++++  +|+  ++++++.+++++.+|+++|.+ +++++||+|+  + |  +++|+||.+||++.....           
T Consensus         3 ~~v~~--iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~--~~vGivt~~dl~~~~~~~-----------   65 (136)
T 3lfr_A            3 LQVRD--IMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGE--SHD--DVLGVLLAKDLLPLILKA-----------   65 (136)
T ss_dssp             CBHHH--HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT--CEEEEEEGGGGGGGGGSS-----------
T ss_pred             CChHh--ccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC--cEEEEEEHHHHHHHHHhc-----------
Confidence            34555  688  579999999999999999999 9999999997  6 7  999999999998753100           


Q ss_pred             hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939          287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK  366 (433)
Q Consensus       287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~  366 (433)
                              .                ...               ..+  .                    ..|. +++++.
T Consensus        66 --------~----------------~~~---------------~~v--~--------------------~~m~-~~~~v~   83 (136)
T 3lfr_A           66 --------D----------------GDS---------------DDV--K--------------------KLLR-PATFVP   83 (136)
T ss_dssp             --------S----------------GGG---------------CCG--G--------------------GTCB-CCCEEE
T ss_pred             --------c----------------CCC---------------cCH--H--------------------HHcC-CCeEEC
Confidence                    0                000               000  0                    1233 489999


Q ss_pred             CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      +++++.+|+.+|.+++++++||+|++  |+++||||+.||++++..+
T Consensus        84 ~~~~l~~~~~~m~~~~~~~~~Vvd~~--g~lvGiit~~Dil~~l~~~  128 (136)
T 3lfr_A           84 ESKRLNVLLREFRANHNHMAIVIDEY--GGVAGLVTIEDVLEQIVGD  128 (136)
T ss_dssp             TTCBHHHHHHHHHHHTCCEEEEECTT--SCEEEEEEHHHHHTTC---
T ss_pred             CCCcHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEEHHHHHHHHhCC
Confidence            99999999999999999999999987  9999999999999998763

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.71  E-value=2.4e-17  Score=147.34  Aligned_cols=126  Identities=16%  Similarity=0.192  Sum_probs=97.8

Q ss_pred             CcccccCcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhh
Q 013939          212 SISSLGVIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQF  288 (433)
Q Consensus       212 tV~~L~im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f  288 (433)
                      ++++  +|+  .+++++.+++|+.+|+++|.+ +++++||+|+  +|  +++|+||.+|+++......      +.   .
T Consensus        16 ~~~~--iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~--~~--~lvGiit~~Di~~~~~~~~------~~---~   80 (156)
T 3k6e_A           16 QEET--FLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD--EK--QFVGTIGLRDIMAYQMEHD------LS---Q   80 (156)
T ss_dssp             TGGG--GEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC---C--BEEEEEEHHHHHHHHHHHT------CC---H
T ss_pred             cHHH--hCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC--CC--cEEEEEEecchhhhhhhcc------cc---c
Confidence            3444  576  479999999999999999999 9999999997  78  9999999999987531100      00   0


Q ss_pred             hhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCC
Q 013939          289 VMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKIT  368 (433)
Q Consensus       289 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~  368 (433)
                                              .....            ..+                 +     ..|.+++++|+++
T Consensus        81 ------------------------~~~~~------------~~v-----------------~-----~im~~~~~~v~~~  102 (156)
T 3k6e_A           81 ------------------------EIMAD------------TDI-----------------V-----HMTKTDVAVVSPD  102 (156)
T ss_dssp             ------------------------HHHTT------------SBG-----------------G-----GTCBCSCCCBCTT
T ss_pred             ------------------------ccccc------------cCH-----------------H-----HhhcCCceecccc
Confidence                                    00000            001                 0     3368899999999


Q ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCC
Q 013939          369 SSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQP  414 (433)
Q Consensus       369 ~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~  414 (433)
                      +++.+|+.+|.+++  .+||||++  |+++||||++|||+++.+.-
T Consensus       103 ~~l~~~~~~m~~~~--~lpVVd~~--g~l~GiiT~~Dil~~~~~~~  144 (156)
T 3k6e_A          103 FTITEVLHKLVDES--FLPVVDAE--GIFQGIITRKSILKAVNALL  144 (156)
T ss_dssp             CCHHHHHHHTTTSS--EEEEECTT--SBEEEEEEHHHHHHHHHHHS
T ss_pred             cHHHHHHHHHHHcC--CeEEEecC--CEEEEEEEHHHHHHHHHHHh
Confidence            99999999998876  49999998  99999999999999997643

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.70  E-value=5.4e-17  Score=144.83  Aligned_cols=139  Identities=17%  Similarity=0.175  Sum_probs=107.3

Q ss_pred             HHHccCCCCCCCCCCcccccCcCC---CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcch
Q 013939          198 LIGCLGALAPLPLSSISSLGVINP---NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDY  273 (433)
Q Consensus       198 l~~~~~~l~~l~~~tV~~L~im~~---~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~  273 (433)
                      .+.....+..+...+|++  +|.+   +++++.+++++.+|+++|.+ +++.+||||+  +|  +++|+||.+|+++...
T Consensus        11 ~~~~~~~~~~l~~~~v~d--im~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~--~~--~~~Givt~~dl~~~~~   84 (165)
T 3fhm_A           11 SSGRENLYFQGMATFVKD--LLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA--DG--VVLGIFTERDLVKAVA   84 (165)
T ss_dssp             -----CCCCSSSSCBHHH--HHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECT--TS--CEEEEEEHHHHHHHHH
T ss_pred             ccccchhhHhhhhcCHHH--HhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC--CC--eEEEEEEHHHHHHHHH
Confidence            333344556677778887  5875   79999999999999999999 9999999998  78  9999999999986531


Q ss_pred             hHHHHHHhhccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCc
Q 013939          274 LAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGR  353 (433)
Q Consensus       274 ~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (433)
                      ...    ..     .                        ..               ..+                 +   
T Consensus        85 ~~~----~~-----~------------------------~~---------------~~v-----------------~---   96 (165)
T 3fhm_A           85 GQG----AA-----S------------------------LQ---------------QSV-----------------S---   96 (165)
T ss_dssp             HHG----GG-----G------------------------GT---------------SBG-----------------G---
T ss_pred             hcC----Cc-----c------------------------cc---------------CCH-----------------H---
Confidence            100    00     0                        00               001                 0   


Q ss_pred             cccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          354 SMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       354 ~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                        ..|..++++|++++++.+++.+|.+++++++||||+   |+++||||..||++++..+-.
T Consensus        97 --~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---g~~~Giit~~dil~~~~~~~~  153 (165)
T 3fhm_A           97 --VAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN---GRLAGIISIGDVVKARIGEIE  153 (165)
T ss_dssp             --GTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET---TEEEEEEEHHHHHHHTTCC--
T ss_pred             --HHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC---CEEEEEEEHHHHHHHHHHHHH
Confidence              225678999999999999999999999999999998   799999999999999976543

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.70  E-value=5.6e-17  Score=136.40  Aligned_cols=119  Identities=16%  Similarity=0.164  Sum_probs=99.4

Q ss_pred             CcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhh
Q 013939          212 SISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVM  290 (433)
Q Consensus       212 tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~  290 (433)
                      ++++  +|.++++++.+++++.+|++.|.+ +++.+||+|+  +|  +++|+||.+|++.....                
T Consensus         2 ~v~~--im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~--~~~G~vt~~dl~~~~~~----------------   59 (122)
T 3kpb_A            2 LVKD--ILSKPPITAHSNISIMEAAKILIKHNINHLPIVDE--HG--KLVGIITSWDIAKALAQ----------------   59 (122)
T ss_dssp             BHHH--HCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECT--TS--BEEEEECHHHHHHHHHT----------------
T ss_pred             chHH--hhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECC--CC--CEEEEEEHHHHHHHHHh----------------
Confidence            3444  688999999999999999999999 9999999997  78  99999999999865300                


Q ss_pred             ccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCC
Q 013939          291 GVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSS  370 (433)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~s  370 (433)
                                            .. .              .+                 +     ..|..++++|.++++
T Consensus        60 ----------------------~~-~--------------~v-----------------~-----~~~~~~~~~v~~~~~   80 (122)
T 3kpb_A           60 ----------------------NK-K--------------TI-----------------E-----EIMTRNVITAHEDEP   80 (122)
T ss_dssp             ----------------------TC-C--------------BG-----------------G-----GTSBSSCCCEETTSB
T ss_pred             ----------------------cc-c--------------CH-----------------H-----HHhcCCCeEECCCCC
Confidence                                  00 0              00                 0     224678899999999


Q ss_pred             HHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          371 LAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       371 L~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      +.+++.+|.+++++++||+|++  |+++|+||..||++++.++
T Consensus        81 l~~~~~~~~~~~~~~l~Vvd~~--g~~~Givt~~dl~~~l~~~  121 (122)
T 3kpb_A           81 VDHVAIKMSKYNISGVPVVDDY--RRVVGIVTSEDISRLFGGK  121 (122)
T ss_dssp             HHHHHHHHHHHTCSEEEEECTT--CBEEEEEEHHHHHHHHC--
T ss_pred             HHHHHHHHHHhCCCeEEEECCC--CCEEEEEeHHHHHHHhhcC
Confidence            9999999999999999999998  9999999999999998753

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.69  E-value=2.3e-16  Score=135.62  Aligned_cols=126  Identities=18%  Similarity=0.296  Sum_probs=102.6

Q ss_pred             CCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhh-cchhHHHHHHhhccch
Q 013939          209 PLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWK-CDYLAAAWALANLSAG  286 (433)
Q Consensus       209 ~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~-~~~~~~~~~~~~l~~~  286 (433)
                      ...++++  +|+++++++.+++++.+|+++|.+ +++++||+|+  +|  +++|+||.+||.+ +...            
T Consensus         5 ~~~~v~~--im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~--~~~Givt~~dl~~~~~~~------------   66 (138)
T 2yzi_A            5 MKAPIKV--YMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND--DG--NVVGFFTKSDIIRRVIVP------------   66 (138)
T ss_dssp             TTSBGGG--TCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT--TS--CEEEEEEHHHHHHHTTTT------------
T ss_pred             hhhhHHH--HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC--CC--cEEEEEeHHHHHHHHHhc------------
Confidence            3456665  688999999999999999999999 9999999997  78  9999999999963 3200            


Q ss_pred             hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939          287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK  366 (433)
Q Consensus       287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~  366 (433)
                               +.+              ..               ..+                 +     ..|..++++|+
T Consensus        67 ---------~~~--------------~~---------------~~v-----------------~-----~~m~~~~~~v~   86 (138)
T 2yzi_A           67 ---------GLP--------------YD---------------IPV-----------------E-----RIMTRNLITAN   86 (138)
T ss_dssp             ---------CCC--------------TT---------------SBG-----------------G-----GTCBCSCCEEE
T ss_pred             ---------CCc--------------cc---------------CCH-----------------H-----HHhhCCCeEEC
Confidence                     000              00               000                 0     22577899999


Q ss_pred             CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      +++++.+++.+|.+++++++ |||++  |+++||||..||++++...-.
T Consensus        87 ~~~~l~~~~~~m~~~~~~~l-Vvd~~--g~~~Giit~~dil~~~~~~~~  132 (138)
T 2yzi_A           87 VNTPLGEVLRKMAEHRIKHI-LIEEE--GKIVGIFTLSDLLEASRRRLE  132 (138)
T ss_dssp             TTSBHHHHHHHHHHHTCSEE-EEEET--TEEEEEEEHHHHHHHHHCCSC
T ss_pred             CCCcHHHHHHHHHhcCCCEE-EECCC--CCEEEEEEHHHHHHHHHHHHH
Confidence            99999999999999999999 99977  999999999999999987543

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.69  E-value=3.7e-17  Score=140.64  Aligned_cols=123  Identities=11%  Similarity=0.115  Sum_probs=97.2

Q ss_pred             CcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhh
Q 013939          212 SISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQF  288 (433)
Q Consensus       212 tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f  288 (433)
                      ++++  +|++  +++++.+++++.+|+++|.+ +++++||++++ +|  +++|+||.+||++.....             
T Consensus         3 ~v~~--iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~-~~--~lvGivt~~dl~~~~~~~-------------   64 (130)
T 3hf7_A            3 SVND--IMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDS-LD--DAISMLRVREAYRLMTEK-------------   64 (130)
T ss_dssp             BHHH--HSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSS-GG--GEEEEEEHHHHHHHHTSS-------------
T ss_pred             CHHH--hCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CC--cEEEEEEHHHHHHHHhcc-------------
Confidence            3444  5863  69999999999999999999 99999999751 46  999999999998653000             


Q ss_pred             hhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCC
Q 013939          289 VMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKIT  368 (433)
Q Consensus       289 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~  368 (433)
                            . .+   ..         .                 .+      .                ..| ++++++.++
T Consensus        65 ------~-~~---~~---------~-----------------~v------~----------------~~m-~~~~~v~~~   85 (130)
T 3hf7_A           65 ------K-EF---TK---------E-----------------IM------L----------------RAA-DEIYFVPEG   85 (130)
T ss_dssp             ------S-CC---CH---------H-----------------HH------H----------------HHS-BCCCEEETT
T ss_pred             ------C-cc---ch---------h-----------------hH------H----------------Hhc-cCCeEeCCC
Confidence                  0 00   00         0                 00      0                113 578999999


Q ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          369 SSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       369 ~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      +++.+++.+|.+++++++||+|++  |+++||||+.||++++..+
T Consensus        86 ~~l~~~~~~m~~~~~~~~~Vvd~~--g~lvGiit~~Dil~~l~g~  128 (130)
T 3hf7_A           86 TPLSTQLVKFQRNKKKVGLVVDEY--GDIQGLVTVEDILEEIVGD  128 (130)
T ss_dssp             CBHHHHHHHHHHHCCCEEEEECTT--SCEEEEEEHHHHHHHHHC-
T ss_pred             CcHHHHHHHHHhcCCeEEEEEcCC--CCEEEEeeHHHHHHHHhCC
Confidence            999999999999999999999987  9999999999999999754

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.68  E-value=9e-17  Score=139.47  Aligned_cols=138  Identities=15%  Similarity=0.238  Sum_probs=102.0

Q ss_pred             CCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchh
Q 013939          211 SSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQ  287 (433)
Q Consensus       211 ~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~  287 (433)
                      .++++  +|.+  +++++.+++++.+|+++|.+ +++++||+|+  +|  +++|+||.+|++........+..       
T Consensus         5 ~~v~~--im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~--~~~G~vt~~dl~~~~~~~~~~~~-------   71 (152)
T 4gqw_A            5 YTVGE--FMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE--DW--KLVGLVSDYDLLALDSGDSTWKT-------   71 (152)
T ss_dssp             SBGGG--TSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT--TC--BEEEEEEHHHHTTCC----CCHH-------
T ss_pred             EEhhh--ccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC--CC--eEEEEEEHHHHHHhhcccCcccc-------
Confidence            35565  6887  89999999999999999999 9999999998  78  99999999999876411100000       


Q ss_pred             hhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecC
Q 013939          288 FVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKI  367 (433)
Q Consensus       288 f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p  367 (433)
                      |.....       +        +. ....             ..+                 +     ..|..++++|.+
T Consensus        72 ~~~~~~-------~--------~~-~~~~-------------~~v-----------------~-----~~m~~~~~~v~~  100 (152)
T 4gqw_A           72 FNAVQK-------L--------LS-KTNG-------------KLV-----------------G-----DLMTPAPLVVEE  100 (152)
T ss_dssp             HHHHHT-------C--------------C-------------CBH-----------------H-----HHSEESCCCEES
T ss_pred             hHHHHH-------H--------HH-Hhcc-------------ccH-----------------H-----HhcCCCceEECC
Confidence            000000       0        00 0000             000                 0     235678899999


Q ss_pred             CCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCC
Q 013939          368 TSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQP  414 (433)
Q Consensus       368 ~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~  414 (433)
                      +++|.+++.+|.+++++++||||++  |+++||||..||++++.+..
T Consensus       101 ~~~l~~a~~~~~~~~~~~l~Vvd~~--g~~~Giit~~dil~~~~~~~  145 (152)
T 4gqw_A          101 KTNLEDAAKILLETKYRRLPVVDSD--GKLVGIITRGNVVRAALQIK  145 (152)
T ss_dssp             SSBHHHHHHHHHHSSCCEEEEECTT--SBEEEEEEHHHHHHHHHC--
T ss_pred             CCcHHHHHHHHHHCCCCEEEEECCC--CcEEEEEEHHHHHHHHHhcc
Confidence            9999999999999999999999987  99999999999999998743

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.68  E-value=1.6e-16  Score=136.73  Aligned_cols=124  Identities=15%  Similarity=0.203  Sum_probs=104.4

Q ss_pred             hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939            9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ   88 (433)
Q Consensus         9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~   88 (433)
                      +|+|+|...++++++++++|+.+|++.|.+++++++||++.+            .++++|+|+..||++++.+.....  
T Consensus         3 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~------------~~~lvGivt~~dl~~~~~~~~~~~--   68 (130)
T 3hf7_A            3 SVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDS------------LDDAISMLRVREAYRLMTEKKEFT--   68 (130)
T ss_dssp             BHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSS------------GGGEEEEEEHHHHHHHHTSSSCCC--
T ss_pred             CHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCC------------CCcEEEEEEHHHHHHHHhccCccc--
Confidence            689999655679999999999999999999999999999753            279999999999999886542221  


Q ss_pred             HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccccc
Q 013939           89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNL  167 (433)
Q Consensus        89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  167 (433)
                          ..+|+++|. +   ++++++++++.+|++.|. ++++++||.++++                              
T Consensus        69 ----~~~v~~~m~-~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g------------------------------  110 (130)
T 3hf7_A           69 ----KEIMLRAAD-E---IYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG------------------------------  110 (130)
T ss_dssp             ----HHHHHHHSB-C---CCEEETTCBHHHHHHHHHHHCCCEEEEECTTS------------------------------
T ss_pred             ----hhhHHHhcc-C---CeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCC------------------------------
Confidence                257899994 3   789999999999999999 7999999986432                              


Q ss_pred             ccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          168 IANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                      +++||||..|+++.+.+
T Consensus       111 ----------------~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A          111 ----------------DIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             ----------------CEEEEEEHHHHHHHHHC
T ss_pred             ----------------CEEEEeeHHHHHHHHhC
Confidence                            46899999999998863

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.68  E-value=7.7e-17  Score=142.09  Aligned_cols=121  Identities=17%  Similarity=0.169  Sum_probs=99.9

Q ss_pred             CCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEe-cCCCCCcceEEeecchhhhhhcchhHHHHHHhhccch
Q 013939          211 SSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVL-EPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAG  286 (433)
Q Consensus       211 ~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVV-d~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~  286 (433)
                      .++++  +|++  +++++.+++++.+|+++|.+ +++++||+ ++. +|  +++|+||.+||+......     ..    
T Consensus        20 ~~v~~--iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~-~~--~lvGivt~~dl~~~~~~~-----~~----   85 (153)
T 3oco_A           20 KVASD--VMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADND-KD--KIIGYAYNYDIVRQARID-----DK----   85 (153)
T ss_dssp             CBHHH--HSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTE-EE--EEEEEEEHHHHHHHHHHH-----TT----
T ss_pred             CEeee--EecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCC-CC--cEEEEEEHHHHHhHHhcC-----CC----
Confidence            45665  6886  89999999999999999999 99999999 641 36  999999999998653100     00    


Q ss_pred             hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939          287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK  366 (433)
Q Consensus       287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~  366 (433)
                                                .                 .+                 +     ..| +++++|.
T Consensus        86 --------------------------~-----------------~v-----------------~-----~~m-~~~~~v~   99 (153)
T 3oco_A           86 --------------------------A-----------------KI-----------------S-----TIM-RDIVSVP   99 (153)
T ss_dssp             --------------------------S-----------------BG-----------------G-----GTC-BCCEEEE
T ss_pred             --------------------------C-----------------cH-----------------H-----HHh-CCCeEEC
Confidence                                      0                 00                 0     225 6899999


Q ss_pred             CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      +++++.+|+.+|.+++++++||||++  |+++||||+.||++++..+
T Consensus       100 ~~~~l~~~~~~m~~~~~~~lpVvd~~--g~~vGivt~~dil~~l~~~  144 (153)
T 3oco_A          100 ENMKVPDVMEEMSAHRVPMAIVIDEY--GGTSGIITDKDVYEELFGN  144 (153)
T ss_dssp             TTSBHHHHHHHHHHTTCSCEEEECTT--SCEEEEECHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEEeCC--CCEEEEeeHHHHHHHHhcc
Confidence            99999999999999999999999997  9999999999999999864

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.68  E-value=4e-16  Score=136.32  Aligned_cols=126  Identities=15%  Similarity=0.298  Sum_probs=108.8

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      .|...+|+|+|....+++++++++|+.+|++.|.+++++++||+|.+            .++++|+||..|++.++..+.
T Consensus        19 ~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~------------~~~lvGivt~~dl~~~~~~~~   86 (148)
T 3lv9_A           19 EFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKN------------KDDILGFVHIRDLYNQKINEN   86 (148)
T ss_dssp             GGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSS------------TTSEEEEEEHHHHHHHHHHHS
T ss_pred             ccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCC------------CCcEEEEEEHHHHHHHHhcCC
Confidence            46677899999754589999999999999999999999999999863            169999999999999875421


Q ss_pred             CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939           84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS  162 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  162 (433)
                               +.+|+++| .+   ++++.+++++.+|++.|. ++++++||+++.+                         
T Consensus        87 ---------~~~v~~~m-~~---~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g-------------------------  128 (148)
T 3lv9_A           87 ---------KIELEEIL-RD---IIYISENLTIDKALERIRKEKLQLAIVVDEYG-------------------------  128 (148)
T ss_dssp             ---------CCCGGGTC-BC---CEEEETTSBHHHHHHHHHHHTCSEEEEECTTS-------------------------
T ss_pred             ---------CccHHHhc-CC---CeEECCCCCHHHHHHHHHhcCCeEEEEEeCCC-------------------------
Confidence                     57899999 54   899999999999999999 7999999986532                         


Q ss_pred             cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                           +++||||..|+++.+.+
T Consensus       129 ---------------------~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A          129 ---------------------GTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             ---------------------SEEEEEEHHHHHHHHHH
T ss_pred             ---------------------CEEEEEEHHHHHHHHhC
Confidence                                 46899999999999864

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.67  E-value=1.9e-16  Score=135.64  Aligned_cols=126  Identities=13%  Similarity=0.169  Sum_probs=105.1

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      .|...+|+|+|...++++++++++|+.+|++.|.+++++++||+|.+            .++++|+||..|++.++.+..
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~------------~~~~~Givt~~dl~~~~~~~~   69 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQ------------KDNIIGFVHRLELFKMQQSGS   69 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSS------------TTCEEEECCHHHHHHHHHTTT
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC------------CCcEEEEEEHHHHHHHHhcCC
Confidence            46678899999766788999999999999999999999999999863            279999999999999876431


Q ss_pred             CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939           84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS  162 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  162 (433)
                              .+.+|+++|.    +++++.+++++.+|++.|. ++++++||+++++                         
T Consensus        70 --------~~~~v~~~m~----~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g-------------------------  112 (130)
T 3i8n_A           70 --------GQKQLGAVMR----PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYG-------------------------  112 (130)
T ss_dssp             --------TTSBHHHHSE----ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTS-------------------------
T ss_pred             --------CcCCHHHHhc----CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCC-------------------------
Confidence                    1478999995    2789999999999999999 7999999986532                         


Q ss_pred             cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHH
Q 013939          163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLI  199 (433)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~  199 (433)
                                           +++||||..|+++++.
T Consensus       113 ---------------------~~vGivt~~dil~~l~  128 (130)
T 3i8n_A          113 ---------------------TVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             ---------------------CEEEEEEHHHHHHHHH
T ss_pred             ---------------------CEEEEEEHHHHHHHHc
Confidence                                 4689999999999885

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.67  E-value=3e-16  Score=137.00  Aligned_cols=134  Identities=18%  Similarity=0.197  Sum_probs=110.3

Q ss_pred             ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC
Q 013939            5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC   84 (433)
Q Consensus         5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~   84 (433)
                      |...+|+|+|..+.+++++++++|+.+|++.|.+++++++||+|.+             ++++|+||..||+.++.....
T Consensus        12 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~-------------~~~~Givt~~dl~~~~~~~~~   78 (150)
T 3lqn_A           12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM-------------YKLHGLISTAMILDGILGLER   78 (150)
T ss_dssp             HHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-------------CBEEEEEEHHHHHHHTBCSSS
T ss_pred             hhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCC-------------CCEEEEEEHHHHHHHHHhhcc
Confidence            5667899999755578999999999999999999999999999863             799999999999998865322


Q ss_pred             cchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcc
Q 013939           85 LEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSS  163 (433)
Q Consensus        85 l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~  163 (433)
                      .. .....+.+|+++|..+   ++++.+++++.+|++.|. +++  +||++++                           
T Consensus        79 ~~-~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~---------------------------  125 (150)
T 3lqn_A           79 IE-FERLEEMKVEQVMKQD---IPVLKLEDSFAKALEMTIDHPF--ICAVNED---------------------------  125 (150)
T ss_dssp             BC-GGGGGGCBGGGTCBSS---CCEEETTCBHHHHHHHHHHCSE--EEEECTT---------------------------
T ss_pred             cc-hhHHhcCCHHHHhcCC---CceeCCCCCHHHHHHHHHhCCE--EEEECCC---------------------------
Confidence            21 1233468999999865   899999999999999999 565  8887643                           


Q ss_pred             ccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccC
Q 013939          164 SNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLG  203 (433)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~  203 (433)
                                         |+.+|+||+.|+++++.+...
T Consensus       126 -------------------g~~~Giit~~dil~~l~~~~~  146 (150)
T 3lqn_A          126 -------------------GYFEGILTRRAILKLLNKKVR  146 (150)
T ss_dssp             -------------------CBEEEEEEHHHHHHHHHHHC-
T ss_pred             -------------------CcEEEEEEHHHHHHHHHHHhH
Confidence                               256899999999999976543

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.66  E-value=8.5e-16  Score=131.24  Aligned_cols=127  Identities=17%  Similarity=0.236  Sum_probs=107.3

Q ss_pred             cchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCc
Q 013939            6 IYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCL   85 (433)
Q Consensus         6 ~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l   85 (433)
                      ...+|+|+|.  ++++++++++++.+|++.|.+++++++||+| +             ++++|+|+..|++.++.++.. 
T Consensus         2 ~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-------------~~~~Givt~~dl~~~~~~~~~-   64 (133)
T 2ef7_A            2 EEEIVKEYMK--TQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G-------------NKPVGIITERDIVKAIGKGKS-   64 (133)
T ss_dssp             CCCBGGGTSB--CSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T-------------TEEEEEEEHHHHHHHHHTTCC-
T ss_pred             CcccHHHhcc--CCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-------------CEEEEEEcHHHHHHHHhcCCC-
Confidence            4567899986  5689999999999999999999999999999 4             799999999999988765311 


Q ss_pred             chHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccc
Q 013939           86 EDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSS  164 (433)
Q Consensus        86 ~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~  164 (433)
                            .+.+|+++|..+   ++++++++++.+|++.|. ++++++||++++                            
T Consensus        65 ------~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~----------------------------  107 (133)
T 2ef7_A           65 ------LETKAEEFMTAS---LITIREDSPITGALALMRQFNIRHLPVVDDK----------------------------  107 (133)
T ss_dssp             ------TTCBGGGTSEEC---CCCEETTSBHHHHHHHHHHHTCSEEEEECTT----------------------------
T ss_pred             ------cccCHHHHcCCC---CEEECCCCCHHHHHHHHHHcCCCEEEEECCC----------------------------
Confidence                  247899999864   899999999999999999 799999998643                            


Q ss_pred             cccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCC
Q 013939          165 NNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGA  204 (433)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~  204 (433)
                                        |+.+|+||..|+++++.+....
T Consensus       108 ------------------g~~~Giit~~dll~~~~~~~~~  129 (133)
T 2ef7_A          108 ------------------GNLKGIISIRDITRAIDDMFET  129 (133)
T ss_dssp             ------------------SCEEEEEEHHHHHHHHHHHC--
T ss_pred             ------------------CeEEEEEEHHHHHHHHHHHHHH
Confidence                              2468999999999999765443

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.66  E-value=4.7e-17  Score=142.62  Aligned_cols=137  Identities=20%  Similarity=0.189  Sum_probs=100.2

Q ss_pred             eHHHHHHHHHHccCCCCCCCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchh
Q 013939          190 SREDVIRFLIGCLGALAPLPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISAS  266 (433)
Q Consensus       190 Tq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~  266 (433)
                      ++.|..+|-.  .+.++.....++++  +|++  +++++.+++++.+|+++|.+ +++.+||+|+  +|  +++|+||.+
T Consensus         9 ~~~~~~~~~~--~~~l~~~l~~~v~d--im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~--~~--~~~Givt~~   80 (149)
T 3k2v_A            9 TAEDFALSHP--GGALGRKLLLRVND--IMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD--DM--NIIGIFTDG   80 (149)
T ss_dssp             -------------CHHHHHTTSBGGG--TSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT--TC--BEEEEEEHH
T ss_pred             CHHHhhhcCC--CchhchhcccCHHH--HhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC--CC--cEEEEecHH
Confidence            3455544321  12233334457776  6998  99999999999999999999 9999999998  78  999999999


Q ss_pred             hhhhcchhHHHHHHhhccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCC
Q 013939          267 KLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRS  346 (433)
Q Consensus       267 DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (433)
                      |+++....                   +. .+   ..                          ..+              
T Consensus        81 dl~~~~~~-------------------~~-~~---~~--------------------------~~v--------------   97 (149)
T 3k2v_A           81 DLRRVFDT-------------------GV-DM---RD--------------------------ASI--------------   97 (149)
T ss_dssp             HHHHHHCS-------------------SS-CC---TT--------------------------CBH--------------
T ss_pred             HHHHHHhc-------------------CC-Cc---cc--------------------------CcH--------------
Confidence            99864300                   00 00   00                          000              


Q ss_pred             CCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939          347 PSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILV  408 (433)
Q Consensus       347 ~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~  408 (433)
                         +     ..|..++++|++++++.+++.+|.+++++++||+|+   ++++||||..||++
T Consensus        98 ---~-----~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~~Giit~~dil~  148 (149)
T 3k2v_A           98 ---A-----DVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG---DHLLGVVHMHDLLR  148 (149)
T ss_dssp             ---H-----HHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET---TEEEEEEEHHHHTC
T ss_pred             ---H-----HHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC---CEEEEEEEHHHhhc
Confidence               0     225678899999999999999999999999999998   59999999999985

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.66  E-value=3.5e-16  Score=133.66  Aligned_cols=125  Identities=14%  Similarity=0.153  Sum_probs=101.4

Q ss_pred             CCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhh
Q 013939          210 LSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQF  288 (433)
Q Consensus       210 ~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f  288 (433)
                      ..++++  +|.++++++.+++++.+|+++|.+ +++.+||+|   +|  +++|+||.+|++.+...              
T Consensus         3 ~~~v~~--im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~--~~~Givt~~dl~~~~~~--------------   61 (133)
T 2ef7_A            3 EEIVKE--YMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD---GN--KPVGIITERDIVKAIGK--------------   61 (133)
T ss_dssp             CCBGGG--TSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE---TT--EEEEEEEHHHHHHHHHT--------------
T ss_pred             cccHHH--hccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE---CC--EEEEEEcHHHHHHHHhc--------------
Confidence            345665  688899999999999999999999 999999999   47  99999999999764300              


Q ss_pred             hhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCC
Q 013939          289 VMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKIT  368 (433)
Q Consensus       289 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~  368 (433)
                           +. .+               .               ..+                 +     ..|..++++|+++
T Consensus        62 -----~~-~~---------------~---------------~~v-----------------~-----~~~~~~~~~v~~~   83 (133)
T 2ef7_A           62 -----GK-SL---------------E---------------TKA-----------------E-----EFMTASLITIRED   83 (133)
T ss_dssp             -----TC-CT---------------T---------------CBG-----------------G-----GTSEECCCCEETT
T ss_pred             -----CC-Cc---------------c---------------cCH-----------------H-----HHcCCCCEEECCC
Confidence                 00 00               0               000                 0     2246689999999


Q ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          369 SSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       369 ~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      +++.+++.+|.+++++++||+|++  |+++|+||+.||++++.+.-.
T Consensus        84 ~~l~~~~~~~~~~~~~~l~Vvd~~--g~~~Giit~~dll~~~~~~~~  128 (133)
T 2ef7_A           84 SPITGALALMRQFNIRHLPVVDDK--GNLKGIISIRDITRAIDDMFE  128 (133)
T ss_dssp             SBHHHHHHHHHHHTCSEEEEECTT--SCEEEEEEHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHcCCCEEEEECCC--CeEEEEEEHHHHHHHHHHHHH
Confidence            999999999999999999999987  999999999999999987543

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.66  E-value=2.1e-16  Score=140.13  Aligned_cols=123  Identities=11%  Similarity=0.150  Sum_probs=99.1

Q ss_pred             CCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhh
Q 013939          210 LSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQF  288 (433)
Q Consensus       210 ~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f  288 (433)
                      ..++++  +|++ ++++.+++++.+|+++|.+ +++.+||+|+  +|  +++|+||.+|++.....              
T Consensus        16 ~~~v~~--im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~--~~--~~~Givt~~dl~~~~~~--------------   74 (159)
T 3fv6_A           16 KLQVKD--FQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDR--DA--VLVGVLSRKDLLRASIG--------------   74 (159)
T ss_dssp             TCBGGG--SCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECT--TS--CEEEEEEHHHHHHHHTS--------------
T ss_pred             hCCHHH--HcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcC--CC--cEEEEEeHHHHHHHhhc--------------
Confidence            345665  6877 4599999999999999999 9999999997  78  99999999999864200              


Q ss_pred             hhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCC--CCeEec
Q 013939          289 VMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRS--TPLTCK  366 (433)
Q Consensus       289 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~it~~  366 (433)
                           .. .+   ..         .                 .+                 +     ..|..  ++++|+
T Consensus        75 -----~~-~~---~~---------~-----------------~v-----------------~-----~~m~~~~~~~~v~   97 (159)
T 3fv6_A           75 -----QQ-EL---TS---------V-----------------PV-----------------H-----IIMTRMPNITVCR   97 (159)
T ss_dssp             -----CS-CT---TT---------C-----------------BG-----------------G-----GTSEETTSCCCBC
T ss_pred             -----cC-cc---cC---------c-----------------CH-----------------H-----HHHcCCCCcEEEC
Confidence                 00 00   00         0                 00                 0     22455  889999


Q ss_pred             CCCCHHHHHHHHHHcCCCEEEEEeCCCCC---eEEEEEeHHHHHHHHHh
Q 013939          367 ITSSLAAVMAQMLSHRATHVWVTEDESDD---VLVGVVGYADILVAVTK  412 (433)
Q Consensus       367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~---~lvGIVs~~DIL~~i~~  412 (433)
                      +++++.+|+.+|.+++++++||||++  |   +++||||..||++++.+
T Consensus        98 ~~~~l~~a~~~m~~~~~~~lpVvd~~--g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           98 REDYVMDIAKHLIEKQIDALPVIKDT--DKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEEEEC--SSSEEEEEEEEHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEEeCC--CcceeEEEEEEHHHHHHHHHH
Confidence            99999999999999999999999997  7   99999999999999987

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.66  E-value=9.9e-17  Score=143.58  Aligned_cols=149  Identities=13%  Similarity=0.244  Sum_probs=101.2

Q ss_pred             CcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhh
Q 013939          212 SISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQF  288 (433)
Q Consensus       212 tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f  288 (433)
                      ++++  +|.+  +++++.+++++.+|+++|.+ +++++||||+  +|  +++|+||.+||+++.......    .+...+
T Consensus         5 ~v~d--im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--~~--~~~Givt~~dl~~~~~~~~~~----~~~~~~   74 (180)
T 3sl7_A            5 TVGD--FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD--NW--TLVGVVSDYDLLALDSISGRS----QNDTNL   74 (180)
T ss_dssp             BHHH--HSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECT--TC--BEEEEEEHHHHTCC-----------------
T ss_pred             eHHH--hcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECC--CC--eEEEEEEHHHHHhhhhhcccc----CCcccc
Confidence            4454  5887  89999999999999999999 9999999998  78  999999999999753110000    000000


Q ss_pred             hhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCC
Q 013939          289 VMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKIT  368 (433)
Q Consensus       289 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~  368 (433)
                      ...  ....|..|..  ....+. ..             ....+                 +     ..|..++++|+++
T Consensus        75 ~~~--~~~~~~~~~~--~~~~~~-~~-------------~~~~v-----------------~-----~~m~~~~~~v~~~  114 (180)
T 3sl7_A           75 FPD--VDSTWKTFNE--LQKLIS-KT-------------YGKVV-----------------G-----DLMTPSPLVVRDS  114 (180)
T ss_dssp             --------CCCSHHH--HHHHHH-TT-------------TTCBH-----------------H-----HHSEESCCCEETT
T ss_pred             ccc--ccchhhhhHH--HHHHHh-cc-------------ccccH-----------------H-----HHhCCCceEeCCC
Confidence            000  0000110000  000000 00             00000                 0     3367789999999


Q ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          369 SSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       369 ~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      ++|.+|+.+|.+++++++||||++  |+++||||+.||++++..
T Consensus       115 ~~l~~a~~~m~~~~~~~lpVvd~~--g~~vGiit~~dil~~~~~  156 (180)
T 3sl7_A          115 TNLEDAARLLLETKFRRLPVVDAD--GKLIGILTRGNVVRAALQ  156 (180)
T ss_dssp             SBHHHHHHHHTTSTTCEEEEECTT--CBEEEEEEHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHcCCCEEEEECCC--CeEEEEEEHHHHHHHHHH
Confidence            999999999999999999999987  999999999999999976

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.66  E-value=3.4e-16  Score=134.05  Aligned_cols=123  Identities=16%  Similarity=0.262  Sum_probs=104.7

Q ss_pred             cchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCc
Q 013939            6 IYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCL   85 (433)
Q Consensus         6 ~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l   85 (433)
                      ...+|+|+|...++++++++++|+.+|++.|.+++++++||+|.+            .++++|+||..|+++++...   
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~------------~~~~~Givt~~dl~~~~~~~---   67 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDD------------RDNIIGILLAKDLLRYMLEP---   67 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSS------------TTCEEEEEEGGGGGGGGTCT---
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCC------------CCcEEEEEEHHHHHhHhccC---
Confidence            456799999755778999999999999999999999999999863            26999999999998876421   


Q ss_pred             chHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccc
Q 013939           86 EDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSS  164 (433)
Q Consensus        86 ~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~  164 (433)
                             +.+|+++|..    ++++.+++++.+|++.|. ++++++||+++.+                           
T Consensus        68 -------~~~v~~~m~~----~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g---------------------------  109 (129)
T 3jtf_A           68 -------ALDIRSLVRP----AVFIPEVKRLNVLLREFRASRNHLAIVIDEHG---------------------------  109 (129)
T ss_dssp             -------TSCGGGGCBC----CCEEETTCBHHHHHHHHHTSSCCEEEEECC-C---------------------------
T ss_pred             -------CcCHHHHhCC----CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCC---------------------------
Confidence                   4689999963    789999999999999999 7899999986532                           


Q ss_pred             cccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          165 NNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                         +++||||..|+++.+.+
T Consensus       110 -------------------~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A          110 -------------------GISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             -------------------CEEEEEEHHHHHHHHHH
T ss_pred             -------------------CEEEEEEHHHHHHHHhC
Confidence                               46899999999999864

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.66  E-value=7.3e-16  Score=129.49  Aligned_cols=118  Identities=18%  Similarity=0.243  Sum_probs=103.2

Q ss_pred             hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939            9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ   88 (433)
Q Consensus         9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~   88 (433)
                      +|+|+|.  ++++++++++++.+|++.|.++++.++||+|.+             ++++|+|+..|++.++...      
T Consensus         2 ~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-------------~~~~G~vt~~dl~~~~~~~------   60 (122)
T 3kpb_A            2 LVKDILS--KPPITAHSNISIMEAAKILIKHNINHLPIVDEH-------------GKLVGIITSWDIAKALAQN------   60 (122)
T ss_dssp             BHHHHCC--SCCCCEETTSBHHHHHHHHHHHTCSCEEEECTT-------------SBEEEEECHHHHHHHHHTT------
T ss_pred             chHHhhC--CCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCC-------------CCEEEEEEHHHHHHHHHhc------
Confidence            6889986  678999999999999999999999999999963             7999999999999987543      


Q ss_pred             HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccccc
Q 013939           89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNL  167 (433)
Q Consensus        89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  167 (433)
                          ..+|+++|.++   ++++++++++.+|++.|. ++++++||.++++                              
T Consensus        61 ----~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g------------------------------  103 (122)
T 3kpb_A           61 ----KKTIEEIMTRN---VITAHEDEPVDHVAIKMSKYNISGVPVVDDYR------------------------------  103 (122)
T ss_dssp             ----CCBGGGTSBSS---CCCEETTSBHHHHHHHHHHHTCSEEEEECTTC------------------------------
T ss_pred             ----ccCHHHHhcCC---CeEECCCCCHHHHHHHHHHhCCCeEEEECCCC------------------------------
Confidence                24899999865   899999999999999999 8999999986532                              


Q ss_pred             ccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          168 IANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                      +.+|+||..|+++++.+
T Consensus       104 ----------------~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A          104 ----------------RVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             ----------------BEEEEEEHHHHHHHHC-
T ss_pred             ----------------CEEEEEeHHHHHHHhhc
Confidence                            46899999999999854

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.66  E-value=2.4e-16  Score=135.30  Aligned_cols=125  Identities=18%  Similarity=0.241  Sum_probs=101.3

Q ss_pred             CCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhh-hhcchhHHHHHHhhccch
Q 013939          209 PLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKL-WKCDYLAAAWALANLSAG  286 (433)
Q Consensus       209 ~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL-~~~~~~~~~~~~~~l~~~  286 (433)
                      ...++++  +|+++++++.+++++.+|+++|.+ +++.+||+|+  +|  +++|+||.+|+ ......            
T Consensus         6 ~~~~v~~--im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~--~~~Givt~~dl~~~~~~~------------   67 (138)
T 2p9m_A            6 KNIKVKD--VMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD--EN--KVIGIVTTTDIGYNLIRD------------   67 (138)
T ss_dssp             TTCBGGG--TSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECT--TC--BEEEEEEHHHHHHHHTTT------------
T ss_pred             ccCCHHH--hhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECC--CC--eEEEEEEHHHHHHHHHhh------------
Confidence            3456665  688999999999999999999999 9999999997  78  99999999999 754300            


Q ss_pred             hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939          287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK  366 (433)
Q Consensus       287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~  366 (433)
                               +.+   ..         .                 .+                 +     ..|..++++|+
T Consensus        68 ---------~~~---~~---------~-----------------~v-----------------~-----~~m~~~~~~v~   87 (138)
T 2p9m_A           68 ---------KYT---LE---------T-----------------TI-----------------G-----DVMTKDVITIH   87 (138)
T ss_dssp             ---------CCC---SS---------C-----------------BH-----------------H-----HHSCSSCCCEE
T ss_pred             ---------ccc---CC---------c-----------------CH-----------------H-----HHhCCCcEEEC
Confidence                     000   00         0                 00                 0     22567899999


Q ss_pred             CCCCHHHHHHHHHHcC-----CCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          367 ITSSLAAVMAQMLSHR-----ATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       367 p~~sL~~v~~~m~~~~-----vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      +++++.+++.+|.+++     ++++||+|++  |+++|+||..||++++.++
T Consensus        88 ~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~--g~~~Giit~~dll~~~~~~  137 (138)
T 2p9m_A           88 EDASILEAIKKMDISGKKEEIINQLPVVDKN--NKLVGIISDGDIIRTISKI  137 (138)
T ss_dssp             TTSBHHHHHHHHTCC-----CCCEEEEECTT--SBEEEEEEHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHhcCCccccccEEEEECCC--CeEEEEEEHHHHHHHHHhh
Confidence            9999999999999999     9999999977  9999999999999998753

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.65  E-value=6.8e-16  Score=149.18  Aligned_cols=52  Identities=25%  Similarity=0.240  Sum_probs=49.6

Q ss_pred             CCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          358 GRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       358 ~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      |...|+|+.++++|.+|+.+|..++++|+||++.   |+|+||||+.||++++..
T Consensus       195 md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~---GrLVGIVTrkDl~kai~~  246 (250)
T 2d4z_A          195 IDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM---GKLVGVVALAEIQAAIEG  246 (250)
T ss_dssp             EECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET---TEEEEEEEHHHHHHHHHC
T ss_pred             ccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEEC---CEEEEEEEHHHHHHHHHH
Confidence            6889999999999999999999999999999986   899999999999999973

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.65  E-value=5.7e-16  Score=132.10  Aligned_cols=122  Identities=16%  Similarity=0.188  Sum_probs=100.8

Q ss_pred             CCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhh
Q 013939          211 SSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFV  289 (433)
Q Consensus       211 ~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~  289 (433)
                      .++++  +|.++++++.+++++.+|+++|.+ +++.+||+|+   |  +++|+||.+|+++....               
T Consensus         5 ~~v~~--~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~--~~~Givt~~dl~~~~~~---------------   62 (128)
T 3gby_A            5 VTFSY--LAETDYPVFTLGGSTADAARRLAASGCACAPVLDG---E--RYLGMVHLSRLLEGRKG---------------   62 (128)
T ss_dssp             CBGGG--GCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET---T--EEEEEEEHHHHHTTCSS---------------
T ss_pred             eEHHH--hhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC---C--EEEEEEEHHHHHHHHhh---------------
Confidence            45665  699999999999999999999999 9999999994   7  99999999999865300               


Q ss_pred             hccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCC
Q 013939          290 MGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITS  369 (433)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~  369 (433)
                                             .....            ..+                 +     ..|..+++++++++
T Consensus        63 -----------------------~~~~~------------~~v-----------------~-----~~m~~~~~~v~~~~   85 (128)
T 3gby_A           63 -----------------------WPTVK------------EKL-----------------G-----EELLETVRSYRPGE   85 (128)
T ss_dssp             -----------------------SCCTT------------CBC-----------------C-----GGGCBCCCCBCTTS
T ss_pred             -----------------------CCccc------------CcH-----------------H-----HHccCCCcEECCCC
Confidence                                   00000            000                 0     22577889999999


Q ss_pred             CHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          370 SLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       370 sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      ++.+++.+|.+++++++||+|++  |+++|+||..||++++.+.
T Consensus        86 ~l~~~~~~~~~~~~~~lpVvd~~--g~~~Giit~~dll~~l~~~  127 (128)
T 3gby_A           86 QLFDNLISVAAAKCSVVPLADED--GRYEGVVSRKRILGFLAER  127 (128)
T ss_dssp             BGGGSHHHHHHCSSSEEEEECTT--CBEEEEEEHHHHHHHHHTT
T ss_pred             CHHHHHHHHHhCCCcEEEEECCC--CCEEEEEEHHHHHHHHHhh
Confidence            99999999999999999999987  9999999999999998753

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.65  E-value=3.9e-16  Score=141.75  Aligned_cols=122  Identities=16%  Similarity=0.151  Sum_probs=101.7

Q ss_pred             CCCcccccCcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhccc
Q 013939          210 LSSISSLGVIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLSA  285 (433)
Q Consensus       210 ~~tV~~L~im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~  285 (433)
                      ..++++  +|+  ++++++.+++++.+|+++|.+ +++++||+|+  + |  +++|+||.+||+......          
T Consensus        35 ~~~v~d--iM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~--~~~--~lvGivt~~Dl~~~~~~~----------   98 (173)
T 3ocm_A           35 ERSIRS--IMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG--SLD--EVVGIGRAKDLVADLITE----------   98 (173)
T ss_dssp             TSCSTT--TSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESS--STT--SEEEEEEHHHHHHHHHHH----------
T ss_pred             CCCHHH--hCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC--CCC--CEEEEEEHHHHHHHHhcC----------
Confidence            455665  687  469999999999999999999 9999999997  5 7  999999999998653100          


Q ss_pred             hhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEe
Q 013939          286 GQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTC  365 (433)
Q Consensus       286 ~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~  365 (433)
                                                 ..               ..+                       . +..++++|
T Consensus        99 ---------------------------~~---------------~~v-----------------------~-~~~~~~~v  112 (173)
T 3ocm_A           99 ---------------------------GR---------------VRR-----------------------N-RLRDPIIV  112 (173)
T ss_dssp             ---------------------------SS---------------CCG-----------------------G-GSBCCCEE
T ss_pred             ---------------------------Cc---------------chh-----------------------H-hcCCCeEE
Confidence                                       00               000                       1 34678999


Q ss_pred             cCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          366 KITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       366 ~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      .+++++.+|+.+|.+++++++||+|++  |+++||||+.||++++..+-.
T Consensus       113 ~~~~~l~~al~~m~~~~~~~~~Vvde~--g~lvGiIT~~Dil~~l~~~i~  160 (173)
T 3ocm_A          113 HESIGILRLMDTLKRSRGQLVLVADEF--GAIEGLVTPIDVFEAIAGEFP  160 (173)
T ss_dssp             CGGGCHHHHHHHHHHSTTCCEEEECTT--CCEEEEECHHHHHHHHHCCCC
T ss_pred             CCCCcHHHHHHHHHHcCCeEEEEEeCC--CCEEEEEeHHHHHHHHhCcCC
Confidence            999999999999999999999999987  999999999999999997543

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.65  E-value=4.1e-16  Score=138.22  Aligned_cols=116  Identities=16%  Similarity=0.187  Sum_probs=95.4

Q ss_pred             CCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhcc
Q 013939          209 PLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLS  284 (433)
Q Consensus       209 ~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~  284 (433)
                      ...++++  +|++  +++++.+++++.+|+++|.+ +++++||+|+  + +  +++|+||.+|++......     ..  
T Consensus        36 ~~~~v~d--iM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~--~~~--~lvGivt~~dl~~~~~~~-----~~--  102 (156)
T 3oi8_A           36 SDLEVRD--AMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE--DKD--EVLGILHAKDLLKYMFNP-----EQ--  102 (156)
T ss_dssp             TTCBGGG--TCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT--CEEEEEEGGGGGGGSSCG-----GG--
T ss_pred             CCCCHhh--eeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC--cEEEEEEHHHHHHHHHcC-----Cc--
Confidence            3456776  6886  79999999999999999999 9999999997  5 5  999999999998753000     00  


Q ss_pred             chhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeE
Q 013939          285 AGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLT  364 (433)
Q Consensus       285 ~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it  364 (433)
                                                  .                 .+      .                ..|. ++++
T Consensus       103 ----------------------------~-----------------~v------~----------------~im~-~~~~  114 (156)
T 3oi8_A          103 ----------------------------F-----------------HL------K----------------SILR-PAVF  114 (156)
T ss_dssp             ----------------------------C-----------------CH------H----------------HHCB-CCCE
T ss_pred             ----------------------------c-----------------cH------H----------------HHcC-CCEE
Confidence                                        0                 00      0                1133 4889


Q ss_pred             ecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHH
Q 013939          365 CKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADIL  407 (433)
Q Consensus       365 ~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL  407 (433)
                      +++++++.+|+.+|.+++++++||+|++  |+++||||+.||+
T Consensus       115 v~~~~~l~~a~~~m~~~~~~~~~Vvd~~--g~~~Givt~~Dil  155 (156)
T 3oi8_A          115 VPEGKSLTALLKEFREQRNHMAIVIDEY--GGTSGLVTFEDII  155 (156)
T ss_dssp             EETTSBHHHHHHHHHHTTCCEEEEECTT--SSEEEEEEHHHHC
T ss_pred             ECCCCCHHHHHHHHHhcCCeEEEEECCC--CCEEEEEEHHHhc
Confidence            9999999999999999999999999987  9999999999986

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.64  E-value=6.8e-16  Score=137.17  Aligned_cols=130  Identities=12%  Similarity=0.152  Sum_probs=100.6

Q ss_pred             CCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhh
Q 013939          211 SSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFV  289 (433)
Q Consensus       211 ~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~  289 (433)
                      .++++  +|+++++++.+++++.+|+++|.+ +++++||||+  +|  +++|+||.+||+.....    .        +.
T Consensus         5 ~~v~d--im~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~--~~--~lvGivt~~dl~~~~~~----~--------~~   66 (160)
T 2o16_A            5 IKVED--MMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA--NK--KLLGIVSQRDLLAAQES----S--------LQ   66 (160)
T ss_dssp             CBGGG--TSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT--TC--BEEEEEEHHHHHHHHHH----H--------CC
T ss_pred             CcHHH--HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC--CC--cEEEEEeHHHHHHHHHH----h--------hc
Confidence            35565  688999999999999999999999 9999999997  78  99999999999865311    0        00


Q ss_pred             hccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCC
Q 013939          290 MGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITS  369 (433)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~  369 (433)
                      .+..+.   .             ....             ..+                 +     ..|..++++|++++
T Consensus        67 ~~~~~~---~-------------~~~~-------------~~v-----------------~-----~im~~~~~~v~~~~   95 (160)
T 2o16_A           67 RSAQGD---S-------------LAFE-------------TPL-----------------F-----EVMHTDVTSVAPQA   95 (160)
T ss_dssp             -------------------------CC-------------CBH-----------------H-----HHSCSCEEEBCTTS
T ss_pred             cccccc---c-------------hhcc-------------cCH-----------------H-----HHhcCCCeEECCCC
Confidence            000000   0             0000             000                 0     23577899999999


Q ss_pred             CHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          370 SLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       370 sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      +|.+|+.+|.+++++++||||+   |+++||||..||++++..
T Consensus        96 ~l~~a~~~m~~~~~~~lpVvd~---g~lvGiit~~dil~~~~~  135 (160)
T 2o16_A           96 GLKESAIYMQKHKIGCLPVVAK---DVLVGIITDSDFVTIAIN  135 (160)
T ss_dssp             BHHHHHHHHHHTTCSCEEEEET---TEEEEEECHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCEEEEEEC---CEEEEEEEHHHHHHHHHH
Confidence            9999999999999999999997   799999999999998765

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.64  E-value=2.6e-15  Score=142.44  Aligned_cols=52  Identities=12%  Similarity=0.154  Sum_probs=43.5

Q ss_pred             CC-CCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHH
Q 013939          358 GR-STPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVT  411 (433)
Q Consensus       358 ~~-~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~  411 (433)
                      |+ +++++|++++++.+++++|.+++++++||||++  |+++||||+.||+++..
T Consensus       191 m~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~--~~~~Giit~~dll~~~~  243 (245)
T 3l2b_A          191 MTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDEN--NKVVGSIARFHLISTHK  243 (245)
T ss_dssp             SBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTT--CBEEEEEECC-------
T ss_pred             ecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCC--CeEEEEEEHHHhhchhh
Confidence            67 899999999999999999999999999999987  99999999999998754

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.64  E-value=5.3e-16  Score=136.65  Aligned_cols=125  Identities=20%  Similarity=0.259  Sum_probs=107.1

Q ss_pred             ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceee-ccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVW-KKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVv-d~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      |...+|+|+|....+++++++++|+.+|++.|.+++++++||+ +.+            .++++|+||..||+.++... 
T Consensus        17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~------------~~~lvGivt~~dl~~~~~~~-   83 (153)
T 3oco_A           17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADND------------KDKIIGYAYNYDIVRQARID-   83 (153)
T ss_dssp             HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTE------------EEEEEEEEEHHHHHHHHHHH-
T ss_pred             cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCC------------CCcEEEEEEHHHHHhHHhcC-
Confidence            4567899999643478999999999999999999999999999 542            27999999999999987542 


Q ss_pred             CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939           84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS  162 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  162 (433)
                              .+.+|+++| .+   ++++.+++++.+|++.|. ++++++||+++.+                         
T Consensus        84 --------~~~~v~~~m-~~---~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g-------------------------  126 (153)
T 3oco_A           84 --------DKAKISTIM-RD---IVSVPENMKVPDVMEEMSAHRVPMAIVIDEYG-------------------------  126 (153)
T ss_dssp             --------TTSBGGGTC-BC---CEEEETTSBHHHHHHHHHHTTCSCEEEECTTS-------------------------
T ss_pred             --------CCCcHHHHh-CC---CeEECCCCCHHHHHHHHHHcCCcEEEEEeCCC-------------------------
Confidence                    157899999 54   899999999999999999 7899999986532                         


Q ss_pred             cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                           +++||||..|+++++.+
T Consensus       127 ---------------------~~vGivt~~dil~~l~~  143 (153)
T 3oco_A          127 ---------------------GTSGIITDKDVYEELFG  143 (153)
T ss_dssp             ---------------------CEEEEECHHHHHHHHHC
T ss_pred             ---------------------CEEEEeeHHHHHHHHhc
Confidence                                 46899999999999964

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.64  E-value=5.6e-16  Score=134.11  Aligned_cols=123  Identities=12%  Similarity=0.095  Sum_probs=98.3

Q ss_pred             CCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhh
Q 013939          211 SSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFV  289 (433)
Q Consensus       211 ~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~  289 (433)
                      .++++  +|+++++++.+++++.+|+++|.+ +++.+||+|+  +|.++++|+||.+||+.....               
T Consensus         5 ~~v~~--im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~~~~Givt~~dl~~~~~~---------------   65 (141)
T 2rih_A            5 IRTSE--LLKRPPVSLPETATIREVATELAKNRVGLAVLTAR--DNPKRPVAVVSERDILRAVAQ---------------   65 (141)
T ss_dssp             CBGGG--GCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEEEEHHHHHHHHHT---------------
T ss_pred             eEHHH--HhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC--CCcceeEEEEEHHHHHHHHhc---------------
Confidence            45665  688999999999999999999999 9999999996  321279999999999864200               


Q ss_pred             hccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCC
Q 013939          290 MGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITS  369 (433)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~  369 (433)
                          +. .+               .               ..+                 +     ..|..++++|+++ 
T Consensus        66 ----~~-~~---------------~---------------~~v-----------------~-----~~m~~~~~~v~~~-   87 (141)
T 2rih_A           66 ----RL-DL---------------D---------------GPA-----------------M-----PIANSPITVLDTD-   87 (141)
T ss_dssp             ----TC-CT---------------T---------------SBS-----------------G-----GGCBCCCEEETTS-
T ss_pred             ----CC-CC---------------C---------------CCH-----------------H-----HHcCCCCeEEcCC-
Confidence                00 00               0               001                 0     2257799999999 


Q ss_pred             CHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          370 SLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       370 sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      ++.+|+.+|.+++++++||+|++  |+++||||+.||++++..
T Consensus        88 ~l~~a~~~m~~~~~~~l~Vvd~~--g~~~Giit~~dll~~~~~  128 (141)
T 2rih_A           88 PVHVAAEKMRRHNIRHVVVVNKN--GELVGVLSIRDLCFERAI  128 (141)
T ss_dssp             BHHHHHHHHHHHTCSEEEEECTT--SCEEEEEEHHHHHSCHHH
T ss_pred             CHHHHHHHHHHcCCeEEEEEcCC--CcEEEEEEHHHHHHHHHH
Confidence            99999999999999999999987  999999999999876654

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.64  E-value=1.5e-16  Score=135.98  Aligned_cols=124  Identities=17%  Similarity=0.229  Sum_probs=98.5

Q ss_pred             CCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhh-cchhHHHHHHhhccch
Q 013939          209 PLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWK-CDYLAAAWALANLSAG  286 (433)
Q Consensus       209 ~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~-~~~~~~~~~~~~l~~~  286 (433)
                      ...++++  +|.++++++.+++++.+|+++|.+ +++++||+|+  +|  +++|+||.+|++. +....           
T Consensus         6 ~~~~v~~--im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~--~~~Givt~~dl~~~~~~~~-----------   68 (133)
T 1y5h_A            6 TMTTARD--IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD--DD--RLHGMLTDRDIVIKGLAAG-----------   68 (133)
T ss_dssp             --CCHHH--HSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG--GG--BEEEEEEHHHHHHTTGGGT-----------
T ss_pred             hhcCHHH--HhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECC--CC--eEEEEEeHHHHHHHHHhcC-----------
Confidence            3456665  688899999999999999999999 9999999987  78  9999999999973 32000           


Q ss_pred             hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939          287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK  366 (433)
Q Consensus       287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~  366 (433)
                              . .+   ..         .                 .+                 +     ..|..++++|+
T Consensus        69 --------~-~~---~~---------~-----------------~v-----------------~-----~~m~~~~~~v~   88 (133)
T 1y5h_A           69 --------L-DP---NT---------A-----------------TA-----------------G-----ELARDSIYYVD   88 (133)
T ss_dssp             --------C-CT---TT---------S-----------------BH-----------------H-----HHHTTCCCCEE
T ss_pred             --------C-Cc---cc---------c-----------------CH-----------------H-----HHhcCCCEEEC
Confidence                    0 00   00         0                 00                 0     22567899999


Q ss_pred             CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      +++++.+++.+|.+++++++||+|+   |+++|+||+.||++++..
T Consensus        89 ~~~~l~~~~~~m~~~~~~~l~Vvd~---g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           89 ANASIQEMLNVMEEHQVRRVPVISE---HRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             TTCCHHHHHHHHHHHTCSEEEEEET---TEEEEEEEHHHHHHTCC-
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEEEC---CEEEEEEEHHHHHHHHHh
Confidence            9999999999999999999999997   799999999999998754

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.64  E-value=8e-16  Score=137.20  Aligned_cols=129  Identities=18%  Similarity=0.179  Sum_probs=110.6

Q ss_pred             cccchhHhhhhcCC-CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcC
Q 013939            4 VFIYHVVGDLTVGK-PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKS   82 (433)
Q Consensus         4 ~~~~~~v~DL~~~k-~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~   82 (433)
                      ++..-+|+|+|..+ .+++++++++|+.+|++.|.++++.++||+|.+             ++++|+||..||++++...
T Consensus        20 ~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-------------~~~~Givt~~dl~~~~~~~   86 (165)
T 3fhm_A           20 QGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD-------------GVVLGIFTERDLVKAVAGQ   86 (165)
T ss_dssp             SSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-------------SCEEEEEEHHHHHHHHHHH
T ss_pred             hhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-------------CeEEEEEEHHHHHHHHHhc
Confidence            45677899999743 578999999999999999999999999999963             7999999999999987643


Q ss_pred             CCcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccC
Q 013939           83 DCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASN  161 (433)
Q Consensus        83 ~~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~  161 (433)
                      .     ......+|+++|..+   ++++++++++.+|++.|. ++++++||+++ +                        
T Consensus        87 ~-----~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g------------------------  133 (165)
T 3fhm_A           87 G-----AASLQQSVSVAMTKN---VVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-G------------------------  133 (165)
T ss_dssp             G-----GGGGTSBGGGTSBSS---CCCBCTTCBHHHHHHHHHHHTCSEEEEEET-T------------------------
T ss_pred             C-----CccccCCHHHHhcCC---CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-C------------------------
Confidence            1     123468999999865   899999999999999999 79999999876 3                        


Q ss_pred             ccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          162 SSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                            +++|+||..||++++.+
T Consensus       134 ----------------------~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A          134 ----------------------RLAGIISIGDVVKARIG  150 (165)
T ss_dssp             ----------------------EEEEEEEHHHHHHHTTC
T ss_pred             ----------------------EEEEEEEHHHHHHHHHH
Confidence                                  35899999999999864

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.64  E-value=1e-15  Score=137.99  Aligned_cols=126  Identities=15%  Similarity=0.233  Sum_probs=105.7

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      .|...+|+|+|...++++++++++|+.+|++.|.+++++++||+|.+            .++++|+||..||+.++.+. 
T Consensus        38 ~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~------------~~~lvGivt~~dl~~~~~~~-  104 (172)
T 3lhh_A           38 RLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNN------------VDDMVGIISAKQLLSESIAG-  104 (172)
T ss_dssp             -----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSS------------TTSEEEEEEHHHHHHHHHTT-
T ss_pred             ccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC------------CCeEEEEEEHHHHHHHHhhc-
Confidence            45667899999755678999999999999999999999999999853            16999999999999987543 


Q ss_pred             CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939           84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS  162 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  162 (433)
                              .+.+|+++| ++   ++++.+++++.+|++.|. ++++++||+++.+                         
T Consensus       105 --------~~~~v~~im-~~---~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g-------------------------  147 (172)
T 3lhh_A          105 --------ERLELVDLV-KN---CNFVPNSLSGMELLEHFRTTGSQMVFVVDEYG-------------------------  147 (172)
T ss_dssp             --------CCCCGGGGC-BC---CEEEETTCCHHHHHHHHHHHTCSEEEEECTTS-------------------------
T ss_pred             --------CcccHHHHh-cC---CeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCC-------------------------
Confidence                    147899999 54   899999999999999999 7999999986532                         


Q ss_pred             cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                           +++||||..|+++.+.+
T Consensus       148 ---------------------~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          148 ---------------------DLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             ---------------------CEEEEEEHHHHHHHHHT
T ss_pred             ---------------------CEEEEeeHHHHHHHHhC
Confidence                                 46899999999999864

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.64  E-value=1.3e-15  Score=142.47  Aligned_cols=115  Identities=17%  Similarity=0.224  Sum_probs=99.9

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV  296 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~  296 (433)
                      +|.++++++.+++++.+|+++|.+ +++++||+|+  +|  +++|+||.+|++....        .              
T Consensus        18 ~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~--~~--~l~Givt~~dl~~~~~--------~--------------   71 (213)
T 1vr9_A           18 WVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR--EG--HFRGVVNKEDLLDLDL--------D--------------   71 (213)
T ss_dssp             GCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT--TS--BEEEEEEGGGGTTSCT--------T--------------
T ss_pred             hhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcC--CC--EEEEEEEHHHHHhhcC--------C--------------
Confidence            688999999999999999999999 9999999997  78  9999999999976530        0              


Q ss_pred             CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939          297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA  376 (433)
Q Consensus       297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~  376 (433)
                                      .                 .+                 +     ..|..++++|++++++.+|+.
T Consensus        72 ----------------~-----------------~v-----------------~-----~im~~~~~~v~~~~~l~~a~~   96 (213)
T 1vr9_A           72 ----------------S-----------------SV-----------------F-----NKVSLPDFFVHEEDNITHALL   96 (213)
T ss_dssp             ----------------S-----------------BS-----------------G-----GGCBCTTCCEETTSBHHHHHH
T ss_pred             ----------------C-----------------cH-----------------H-----HHccCCCEEECCCCcHHHHHH
Confidence                            0                 00                 0     225778999999999999999


Q ss_pred             HHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          377 QMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       377 ~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      +|.+++++++||+|++  |+++||||..||++++.....
T Consensus        97 ~m~~~~~~~lpVvd~~--g~lvGiit~~Dil~~~~~~~~  133 (213)
T 1vr9_A           97 LFLEHQEPYLPVVDEE--MRLKGAVSLHDFLEALIEALA  133 (213)
T ss_dssp             HHHHCCCSEEEEECTT--CBEEEEEEHHHHHHHHHHSCC
T ss_pred             HHHHhCCCEEEEEcCC--CEEEEEEEHHHHHHHHHHHhc
Confidence            9999999999999987  899999999999999986543

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.64  E-value=7.4e-16  Score=129.78  Aligned_cols=117  Identities=15%  Similarity=0.183  Sum_probs=95.5

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV  296 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~  296 (433)
                      +|+++++++.+++++.+|+++|.+ +++.+||+|   +|  +++|+||.+|++......                   . 
T Consensus         6 ~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~--~~~G~it~~dl~~~~~~~-------------------~-   60 (125)
T 1pbj_A            6 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK---EG--VRVGIVTTWDVLEAIAEG-------------------D-   60 (125)
T ss_dssp             HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE---TT--EEEEEEEHHHHHHHHHHT-------------------C-
T ss_pred             hcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe---CC--eeEEEEeHHHHHHHHhcC-------------------C-
Confidence            688899999999999999999999 999999999   47  999999999998643100                   0 


Q ss_pred             CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939          297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA  376 (433)
Q Consensus       297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~  376 (433)
                         .+..         .                 .+                 +     ..|..++++|.+++++.+++.
T Consensus        61 ---~~~~---------~-----------------~v-----------------~-----~~m~~~~~~v~~~~~l~~~~~   89 (125)
T 1pbj_A           61 ---DLAE---------V-----------------KV-----------------W-----EVMERDLVTISPRATIKEAAE   89 (125)
T ss_dssp             ---CTTT---------S-----------------BH-----------------H-----HHCBCGGGEECTTSCHHHHHH
T ss_pred             ---cccc---------c-----------------CH-----------------H-----HHcCCCCeEECCCCCHHHHHH
Confidence               0000         0                 00                 0     225678999999999999999


Q ss_pred             HHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          377 QMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       377 ~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      +|.+++++++||+|+   |+++|+||..||++++.++
T Consensus        90 ~~~~~~~~~l~Vvd~---~~~~Gvit~~dl~~~l~~~  123 (125)
T 1pbj_A           90 KMVKNVVWRLLVEED---DEIIGVISATDILRAKMAK  123 (125)
T ss_dssp             HHHHHTCSEEEEEET---TEEEEEEEHHHHHHHHC--
T ss_pred             HHHhcCCcEEEEEEC---CEEEEEEEHHHHHHHHHhc
Confidence            999999999999997   7999999999999998765

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.63  E-value=6.6e-16  Score=132.49  Aligned_cols=122  Identities=15%  Similarity=0.277  Sum_probs=97.8

Q ss_pred             CcccccCcC---CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchh
Q 013939          212 SISSLGVIN---PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQ  287 (433)
Q Consensus       212 tV~~L~im~---~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~  287 (433)
                      ++++  +|+   ++++++.+++++.+|+++|.+ +++++||+|   +|  +++|+||.+|+++....       .     
T Consensus         7 ~v~~--im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~--~~~Givt~~dl~~~~~~-------~-----   67 (135)
T 2rc3_A            7 TVKH--LLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK---DE--KLVGILTERDFSRKSYL-------L-----   67 (135)
T ss_dssp             BHHH--HHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE---TT--EEEEEEEHHHHHHHGGG-------S-----
T ss_pred             eHHH--HHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE---CC--EEEEEEehHHHHHHHHH-------c-----
Confidence            4555  587   789999999999999999999 999999998   47  99999999999752200       0     


Q ss_pred             hhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecC
Q 013939          288 FVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKI  367 (433)
Q Consensus       288 f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p  367 (433)
                            +.    ..           ..               ..+                 +     ..|..++++|++
T Consensus        68 ------~~----~~-----------~~---------------~~v-----------------~-----~~m~~~~~~v~~   89 (135)
T 2rc3_A           68 ------DK----PV-----------KD---------------TQV-----------------K-----EIMTRQVAYVDL   89 (135)
T ss_dssp             ------SS----CG-----------GG---------------SBG-----------------G-----GTSBCSCCCBCT
T ss_pred             ------CC----Cc-----------cc---------------CCH-----------------H-----HhccCCCeEECC
Confidence                  00    00           00               001                 0     235778999999


Q ss_pred             CCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          368 TSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       368 ~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      ++++.+++.+|.+++++++||+| +  |+++||||..||++++..+
T Consensus        90 ~~~l~~~~~~m~~~~~~~lpVvd-~--g~~~Giit~~dll~~~~~~  132 (135)
T 2rc3_A           90 NNTNEDCMALITEMRVRHLPVLD-D--GKVIGLLSIGDLVKDAISQ  132 (135)
T ss_dssp             TCBHHHHHHHHHHHTCSEEEEEE-T--TEEEEEEEHHHHHHHHHC-
T ss_pred             CCcHHHHHHHHHHhCCCEEEEEe-C--CEEEEEEEHHHHHHHHHhc
Confidence            99999999999999999999999 5  8999999999999998764

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.63  E-value=6.1e-16  Score=140.56  Aligned_cols=124  Identities=15%  Similarity=0.177  Sum_probs=101.4

Q ss_pred             CCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhh
Q 013939          211 SSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFV  289 (433)
Q Consensus       211 ~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~  289 (433)
                      .++++  +|+++++++.+++++.+|+++|.+ +++.+||+|+  +|  +++|+||.+||+......              
T Consensus         9 ~~v~~--im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~--~g--~~vGivt~~dl~~~~~~~--------------   68 (184)
T 1pvm_A            9 MRVEK--IMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD--NG--NDVGLLSERSIIKRFIPR--------------   68 (184)
T ss_dssp             CBGGG--TSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT--TS--CEEEEEEHHHHHHHTGGG--------------
T ss_pred             cCHHH--hcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC--CC--cEEEEEeHHHHHHHHhhc--------------
Confidence            56665  688999999999999999999999 9999999997  78  999999999997643000              


Q ss_pred             hccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCC
Q 013939          290 MGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITS  369 (433)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~  369 (433)
                           ...              ...               ..+                 +     ..|..+++++++++
T Consensus        69 -----~~~--------------~~~---------------~~v-----------------~-----~im~~~~~~v~~~~   92 (184)
T 1pvm_A           69 -----NKK--------------PDE---------------VPI-----------------R-----LVMRKPIPKVKSDY   92 (184)
T ss_dssp             -----CCC--------------GGG---------------SBG-----------------G-----GTSBSSCCEEETTC
T ss_pred             -----ccC--------------ccc---------------CCH-----------------H-----HHhCCCCcEECCCC
Confidence                 000              000               000                 0     22577899999999


Q ss_pred             CHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          370 SLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       370 sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      ++.+|+.+|.+++++++||+|++  |+++||||..||++++..
T Consensus        93 ~l~~a~~~m~~~~~~~lpVvd~~--g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           93 DVKDVAAYLSENGLERCAVVDDP--GRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             BHHHHHHHHHHHTCSEEEEECTT--CCEEEEEEHHHHTTTSCH
T ss_pred             CHHHHHHHHHHcCCcEEEEEcCC--CeEEEEEEHHHHHHHHHh
Confidence            99999999999999999999997  999999999999988765

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.63  E-value=2.9e-15  Score=126.15  Aligned_cols=120  Identities=24%  Similarity=0.325  Sum_probs=103.4

Q ss_pred             hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939            9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ   88 (433)
Q Consensus         9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~   88 (433)
                      +|+|+|.  ++++++++++++.+|++.|.+++++++||+| +             ++++|+|+..|+++++.++..    
T Consensus         2 ~v~~~m~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-------------~~~~G~it~~dl~~~~~~~~~----   61 (125)
T 1pbj_A            2 RVEDVMV--TDVDTIDITASLEDVLRNYVENAKGSSVVVK-E-------------GVRVGIVTTWDVLEAIAEGDD----   61 (125)
T ss_dssp             CHHHHCB--CSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T-------------TEEEEEEEHHHHHHHHHHTCC----
T ss_pred             CHHHhcC--CCceEECCCCcHHHHHHHHHHcCCCEEEEEe-C-------------CeeEEEEeHHHHHHHHhcCCc----
Confidence            5789886  5789999999999999999999999999999 4             799999999999988765321    


Q ss_pred             HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccccc
Q 013939           89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNL  167 (433)
Q Consensus        89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  167 (433)
                        ..+.+|+++|.++   ++++++++++.+|++.|. ++++++||.++ +                              
T Consensus        62 --~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~------------------------------  105 (125)
T 1pbj_A           62 --LAEVKVWEVMERD---LVTISPRATIKEAAEKMVKNVVWRLLVEED-D------------------------------  105 (125)
T ss_dssp             --TTTSBHHHHCBCG---GGEECTTSCHHHHHHHHHHHTCSEEEEEET-T------------------------------
T ss_pred             --ccccCHHHHcCCC---CeEECCCCCHHHHHHHHHhcCCcEEEEEEC-C------------------------------
Confidence              1257899999864   999999999999999999 89999999865 2                              


Q ss_pred             ccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          168 IANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                      +.+|+||..|+++++.+
T Consensus       106 ----------------~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A          106 ----------------EIIGVISATDILRAKMA  122 (125)
T ss_dssp             ----------------EEEEEEEHHHHHHHHC-
T ss_pred             ----------------EEEEEEEHHHHHHHHHh
Confidence                            35899999999999854

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.63  E-value=5.6e-16  Score=132.17  Aligned_cols=122  Identities=18%  Similarity=0.296  Sum_probs=102.9

Q ss_pred             hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch
Q 013939            8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED   87 (433)
Q Consensus         8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~   87 (433)
                      .+|+|+|....+++++++++|+.+|++.|.+++++++||+|.+            .++++|+||..|+++++...     
T Consensus         3 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~------------~~~~vGivt~~dl~~~~~~~-----   65 (127)
T 3nqr_A            3 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED------------KDHIEGILMAKDLLPFMRSD-----   65 (127)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS------------TTCEEEEEEGGGGGGGGSTT-----
T ss_pred             cCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC------------CCcEEEEEEHHHHHHHHhcc-----
Confidence            4689999744568999999999999999999999999999863            26999999999999876532     


Q ss_pred             HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccc
Q 013939           88 QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNN  166 (433)
Q Consensus        88 ~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~  166 (433)
                         ..+.+|+++|..    ++++.+++++.+|++.|. ++++++||+++++                             
T Consensus        66 ---~~~~~v~~~m~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-----------------------------  109 (127)
T 3nqr_A           66 ---AEAFSMDKVLRT----AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFG-----------------------------  109 (127)
T ss_dssp             ---CCCCCHHHHCBC----CCEEETTCBHHHHHHHHHHTTCCEEEEECTTS-----------------------------
T ss_pred             ---CCCCCHHHHcCC----CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCC-----------------------------
Confidence               124789999953    678999999999999999 7899999986432                             


Q ss_pred             cccccCCCCCCCcCCCCCeEEEeeHHHHHHHHH
Q 013939          167 LIANANRPSSSSTTSVRDKFCCLSREDVIRFLI  199 (433)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~  199 (433)
                                       +++||||+.|+++.+.
T Consensus       110 -----------------~~~Giit~~dll~~l~  125 (127)
T 3nqr_A          110 -----------------GVSGLVTIEDILELIV  125 (127)
T ss_dssp             -----------------CEEEEEEHHHHHHHC-
T ss_pred             -----------------CEEEEEEHHHHHHHHh
Confidence                             4689999999999874

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.63  E-value=1.2e-15  Score=134.02  Aligned_cols=133  Identities=17%  Similarity=0.168  Sum_probs=102.7

Q ss_pred             CCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhcc
Q 013939          208 LPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLS  284 (433)
Q Consensus       208 l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~  284 (433)
                      +...++++  +|.+  +++++.+++++.+|+++|.+ +++++||+|+  +|  +++|+||.+|++......         
T Consensus         8 l~~~~v~~--im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~--~~~Givt~~dl~~~~~~~---------   72 (157)
T 2emq_A            8 FMQMTVKP--FLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT--SY--KLHGLISMTMMMDAILGL---------   72 (157)
T ss_dssp             --CCBSTT--TCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT--TC--CEEEEEEHHHHHHHSBCS---------
T ss_pred             HhhCcHHh--hccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC--CC--CEEEEeeHHHHHHHHhcc---------
Confidence            44556665  6886  89999999999999999999 9999999997  78  999999999998653100         


Q ss_pred             chhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeE
Q 013939          285 AGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLT  364 (433)
Q Consensus       285 ~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it  364 (433)
                       ..|    .         .         .....            ..+                 +     ..|..++++
T Consensus        73 -~~~----~---------~---------~~~~~------------~~v-----------------~-----~~m~~~~~~   95 (157)
T 2emq_A           73 -ERI----E---------F---------ERLET------------MKV-----------------E-----EVMNRNIPR   95 (157)
T ss_dssp             -SSB----C---------G---------GGGGT------------CBG-----------------G-----GTCBCCCCE
T ss_pred             -ccc----c---------h---------HHhcC------------CcH-----------------H-----HHhCCCCce
Confidence             000    0         0         00000            001                 0     235779999


Q ss_pred             ecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCCC
Q 013939          365 CKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAA  416 (433)
Q Consensus       365 ~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~~  416 (433)
                      |++++++.+|+.+|.++++  +||||++  |+++||||..||++++......
T Consensus        96 v~~~~~l~~a~~~m~~~~~--l~Vvd~~--g~~~Giit~~dil~~~~~~~~~  143 (157)
T 2emq_A           96 LRLDDSLMKAVGLIVNHPF--VCVENDD--GYFAGIFTRREVLKQLNKQLHR  143 (157)
T ss_dssp             EETTSBHHHHHHHHHHSSE--EEEECSS--SSEEEEEEHHHHHHHHHHTTCC
T ss_pred             ecCCCcHHHHHHHHhhCCE--EEEEcCC--CeEEEEEEHHHHHHHHHHHhhc
Confidence            9999999999999999988  9999987  9999999999999999887553

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.63  E-value=4.7e-16  Score=134.56  Aligned_cols=124  Identities=19%  Similarity=0.269  Sum_probs=104.3

Q ss_pred             hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch
Q 013939            8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED   87 (433)
Q Consensus         8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~   87 (433)
                      .+|+|+|...++++++++++|+.+|+++|.+++++++||+|.+            .++++|+||..||++++.+..    
T Consensus         3 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~------------~~~~vGivt~~dl~~~~~~~~----   66 (136)
T 3lfr_A            3 LQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGES------------HDDVLGVLLAKDLLPLILKAD----   66 (136)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS------------TTCEEEEEEGGGGGGGGGSSS----
T ss_pred             CChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC------------CCcEEEEEEHHHHHHHHHhcc----
Confidence            4789999755678999999999999999999999999999863            269999999999998875321    


Q ss_pred             HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccc
Q 013939           88 QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNN  166 (433)
Q Consensus        88 ~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~  166 (433)
                         ..+.+|+++|..    ++++.+++++.+|++.|. ++++++||+++++                             
T Consensus        67 ---~~~~~v~~~m~~----~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g-----------------------------  110 (136)
T 3lfr_A           67 ---GDSDDVKKLLRP----ATFVPESKRLNVLLREFRANHNHMAIVIDEYG-----------------------------  110 (136)
T ss_dssp             ---GGGCCGGGTCBC----CCEEETTCBHHHHHHHHHHHTCCEEEEECTTS-----------------------------
T ss_pred             ---CCCcCHHHHcCC----CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCC-----------------------------
Confidence               124789999962    789999999999999999 8999999986532                             


Q ss_pred             cccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          167 LIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                       +++||||..|+++.+.+
T Consensus       111 -----------------~lvGiit~~Dil~~l~~  127 (136)
T 3lfr_A          111 -----------------GVAGLVTIEDVLEQIVG  127 (136)
T ss_dssp             -----------------CEEEEEEHHHHHTTC--
T ss_pred             -----------------CEEEEEEHHHHHHHHhC
Confidence                             46899999999997753

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.63  E-value=8.2e-16  Score=133.39  Aligned_cols=131  Identities=24%  Similarity=0.338  Sum_probs=105.2

Q ss_pred             hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch
Q 013939            8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED   87 (433)
Q Consensus         8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~   87 (433)
                      .+|+|+|....+++++++++++.+|++.|.++++.++||+|.+             ++++|+||..||+.++..+.....
T Consensus         5 ~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-------------~~~~G~vt~~dl~~~~~~~~~~~~   71 (152)
T 4gqw_A            5 YTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDED-------------WKLVGLVSDYDLLALDSGDSTWKT   71 (152)
T ss_dssp             SBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT-------------CBEEEEEEHHHHTTCC----CCHH
T ss_pred             EEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC-------------CeEEEEEEHHHHHHhhcccCcccc
Confidence            5689999754589999999999999999999999999999963             799999999999876543211110


Q ss_pred             H-------HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccc
Q 013939           88 Q-------DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDA  159 (433)
Q Consensus        88 ~-------~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~  159 (433)
                      .       ....+.+|+++|..+   ++++++++++.+|++.|. ++++++||+++++                      
T Consensus        72 ~~~~~~~~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g----------------------  126 (152)
T 4gqw_A           72 FNAVQKLLSKTNGKLVGDLMTPA---PLVVEEKTNLEDAAKILLETKYRRLPVVDSDG----------------------  126 (152)
T ss_dssp             HHHHHTC-----CCBHHHHSEES---CCCEESSSBHHHHHHHHHHSSCCEEEEECTTS----------------------
T ss_pred             hHHHHHHHHHhccccHHHhcCCC---ceEECCCCcHHHHHHHHHHCCCCEEEEECCCC----------------------
Confidence            0       122357999999865   889999999999999999 7899999986432                      


Q ss_pred             cCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          160 SNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                              +++|+||..||++++.+
T Consensus       127 ------------------------~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A          127 ------------------------KLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             ------------------------BEEEEEEHHHHHHHHHC
T ss_pred             ------------------------cEEEEEEHHHHHHHHHh
Confidence                                    46899999999999975

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.62  E-value=2.3e-15  Score=133.35  Aligned_cols=132  Identities=14%  Similarity=0.088  Sum_probs=108.2

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      .|...+|+|+|.  + .+++++++++.+|+++|.+++++++||+|.+             ++++|+||..||+.++....
T Consensus        13 ~l~~~~v~~im~--~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-------------~~~~Givt~~dl~~~~~~~~   76 (159)
T 3fv6_A           13 KLKKLQVKDFQS--I-PVVIHENVSVYDAICTMFLEDVGTLFVVDRD-------------AVLVGVLSRKDLLRASIGQQ   76 (159)
T ss_dssp             HHTTCBGGGSCB--C-CCEEETTSBHHHHHHHHHHHTCSEEEEECTT-------------SCEEEEEEHHHHHHHHTSCS
T ss_pred             HHhhCCHHHHcC--C-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCC-------------CcEEEEEeHHHHHHHhhccC
Confidence            345568999986  3 3599999999999999999999999999963             79999999999999875431


Q ss_pred             CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939           84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS  162 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  162 (433)
                      .      ..+.+|+++|... .+++++++++++.+|++.|. ++++++||+++++.                        
T Consensus        77 ~------~~~~~v~~~m~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~------------------------  125 (159)
T 3fv6_A           77 E------LTSVPVHIIMTRM-PNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDK------------------------  125 (159)
T ss_dssp             C------TTTCBGGGTSEET-TSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSS------------------------
T ss_pred             c------ccCcCHHHHHcCC-CCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCc------------------------
Confidence            1      2357999999861 13899999999999999999 89999999875320                        


Q ss_pred             cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHc
Q 013939          163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGC  201 (433)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~  201 (433)
                                         ..+++|+||+.||++++.+-
T Consensus       126 -------------------~~~~vGiit~~dil~~l~~~  145 (159)
T 3fv6_A          126 -------------------GFEVIGRVTKTNMTKILVSL  145 (159)
T ss_dssp             -------------------SEEEEEEEEHHHHHHHHHHH
T ss_pred             -------------------ceeEEEEEEHHHHHHHHHHH
Confidence                               01468999999999999763

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.62  E-value=8e-16  Score=134.29  Aligned_cols=128  Identities=16%  Similarity=0.128  Sum_probs=100.1

Q ss_pred             CCcccccCcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchh
Q 013939          211 SSISSLGVIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQ  287 (433)
Q Consensus       211 ~tV~~L~im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~  287 (433)
                      .++++  +|+  .+++++.+++++.+|++.|.+ +++.+||+|+  +|  +++|+||.+||+.....             
T Consensus        15 ~~v~~--im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~--~~--~~~Givt~~dl~~~~~~-------------   75 (150)
T 3lqn_A           15 IFVKD--LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP--MY--KLHGLISTAMILDGILG-------------   75 (150)
T ss_dssp             CBHHH--HSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT--TC--BEEEEEEHHHHHHHTBC-------------
T ss_pred             CChhh--cccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC--CC--CEEEEEEHHHHHHHHHh-------------
Confidence            45665  588  469999999999999999999 9999999998  78  99999999999865310             


Q ss_pred             hhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecC
Q 013939          288 FVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKI  367 (433)
Q Consensus       288 f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p  367 (433)
                            ..+    +.         ......            ..+                 +     ..|..++++|++
T Consensus        76 ------~~~----~~---------~~~~~~------------~~v-----------------~-----~~m~~~~~~v~~  102 (150)
T 3lqn_A           76 ------LER----IE---------FERLEE------------MKV-----------------E-----QVMKQDIPVLKL  102 (150)
T ss_dssp             ------SSS----BC---------GGGGGG------------CBG-----------------G-----GTCBSSCCEEET
T ss_pred             ------hcc----cc---------hhHHhc------------CCH-----------------H-----HHhcCCCceeCC
Confidence                  000    00         000000            011                 0     335778999999


Q ss_pred             CCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCC
Q 013939          368 TSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQP  414 (433)
Q Consensus       368 ~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~  414 (433)
                      ++++.+|+.+|.++++  +||||++  |+++||||..||++++.+.-
T Consensus       103 ~~~l~~a~~~~~~~~~--l~Vvd~~--g~~~Giit~~dil~~l~~~~  145 (150)
T 3lqn_A          103 EDSFAKALEMTIDHPF--ICAVNED--GYFEGILTRRAILKLLNKKV  145 (150)
T ss_dssp             TCBHHHHHHHHHHCSE--EEEECTT--CBEEEEEEHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHhCCE--EEEECCC--CcEEEEEEHHHHHHHHHHHh
Confidence            9999999999999997  9999987  99999999999999998753

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.62  E-value=2.5e-15  Score=140.39  Aligned_cols=119  Identities=12%  Similarity=0.132  Sum_probs=101.4

Q ss_pred             CCCCcccccCcCCCeEEEcCCCcHHHHHHhccc----CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhcc
Q 013939          209 PLSSISSLGVINPNYSSIEASVPAIEATLKAPG----DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLS  284 (433)
Q Consensus       209 ~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~----~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~  284 (433)
                      ...++++  +|+++++++.+++++.+|++.|.+    +++.+||||+  +|  +++|+||.+||+...        ..  
T Consensus        52 ~~~~v~~--iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~--~~--~lvGivt~~dll~~~--------~~--  115 (205)
T 3kxr_A           52 SENEIGR--YTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE--AD--KYLGTVRRYDIFKHE--------PH--  115 (205)
T ss_dssp             CTTCGGG--GCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT--TC--BEEEEEEHHHHTTSC--------TT--
T ss_pred             CcchHHh--hccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC--CC--eEEEEEEHHHHHhCC--------Cc--
Confidence            4556776  699999999999999999999986    5788999998  78  999999999987532        00  


Q ss_pred             chhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeE
Q 013939          285 AGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLT  364 (433)
Q Consensus       285 ~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it  364 (433)
                                                  .                 .+                 +     ..|.+++++
T Consensus       116 ----------------------------~-----------------~v-----------------~-----~im~~~~~~  128 (205)
T 3kxr_A          116 ----------------------------E-----------------PL-----------------I-----SLLSEDSRA  128 (205)
T ss_dssp             ----------------------------S-----------------BG-----------------G-----GGCCSSCCC
T ss_pred             ----------------------------c-----------------hH-----------------H-----HHhcCCCeE
Confidence                                        0                 00                 0     225778999


Q ss_pred             ecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          365 CKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       365 ~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      |++++++.+|+.+|.+++++++||||++  |+++||||..||++.+..
T Consensus       129 v~~~~~l~~a~~~m~~~~~~~lpVVD~~--g~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          129 LTANTTLLDAAEAIEHSREIELPVIDDA--GELIGRVTLRAATALVRE  174 (205)
T ss_dssp             EETTSCHHHHHHHHHTSSCSEEEEECTT--SBEEEEEEHHHHHHHHHH
T ss_pred             ECCCCCHHHHHHHHHhcCCCEEEEEcCC--CeEEEEEEHHHHHHHHHH
Confidence            9999999999999999999999999998  999999999999999976

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.62  E-value=2.8e-15  Score=128.61  Aligned_cols=128  Identities=17%  Similarity=0.289  Sum_probs=106.6

Q ss_pred             cccccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHH-HHHhh
Q 013939            2 ASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDI-VAFLA   80 (433)
Q Consensus         2 ~~~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DI-l~~l~   80 (433)
                      --.|...+++|+|.  ++++++++++++.+|++.|.++++.++||+|.+             ++++|+|+..|+ +.++.
T Consensus         2 ~~~l~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-------------~~~~Givt~~dl~~~~~~   66 (138)
T 2p9m_A            2 IDTLKNIKVKDVMT--KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDE-------------NKVIGIVTTTDIGYNLIR   66 (138)
T ss_dssp             ---CTTCBGGGTSB--CSCCCEETTSBHHHHHHHHHHHTCCEEEEECTT-------------CBEEEEEEHHHHHHHHTT
T ss_pred             ccccccCCHHHhhc--CCceEECCCCcHHHHHHHHHHCCCcEEEEECCC-------------CeEEEEEEHHHHHHHHHh
Confidence            34567788999985  678999999999999999999999999999863             799999999999 88775


Q ss_pred             cCCCcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cC-----CCeEEeeecCcccccccchhhhcccccc
Q 013939           81 KSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QG-----VRRLLVPKSVVWKGMSKRFSILYNGKWL  154 (433)
Q Consensus        81 ~~~~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~g-----i~rl~V~~~~~~~~~~~~~~~~~~g~~l  154 (433)
                      ...       ..+.+|+++|..+   ++++++++++.+|++.|. ++     ++++||+++++                 
T Consensus        67 ~~~-------~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g-----------------  119 (138)
T 2p9m_A           67 DKY-------TLETTIGDVMTKD---VITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNN-----------------  119 (138)
T ss_dssp             TCC-------CSSCBHHHHSCSS---CCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTS-----------------
T ss_pred             hcc-------cCCcCHHHHhCCC---cEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCC-----------------
Confidence            421       1257899999864   899999999999999999 78     99999986432                 


Q ss_pred             ccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          155 KNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                                   +.+|+||..|+++++.+
T Consensus       120 -----------------------------~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A          120 -----------------------------KLVGIISDGDIIRTISK  136 (138)
T ss_dssp             -----------------------------BEEEEEEHHHHHHHHHH
T ss_pred             -----------------------------eEEEEEEHHHHHHHHHh
Confidence                                         46899999999999865

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.62  E-value=4.7e-15  Score=128.26  Aligned_cols=102  Identities=16%  Similarity=0.181  Sum_probs=89.4

Q ss_pred             hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCC--eEEEEEeHHHHHHHhhcCCCc
Q 013939            8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQ--RFVGILNSFDIVAFLAKSDCL   85 (433)
Q Consensus         8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~--~~VGivt~~DIl~~l~~~~~l   85 (433)
                      .+|+|+|.  ++++++++++|+.+|++.|.+++++++||+|.+             +  +++|+||..||+.++.+... 
T Consensus         5 ~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-------------~~~~~~Givt~~dl~~~~~~~~~-   68 (141)
T 2rih_A            5 IRTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTARD-------------NPKRPVAVVSERDILRAVAQRLD-   68 (141)
T ss_dssp             CBGGGGCC--SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETT-------------EEEEEEEEEEHHHHHHHHHTTCC-
T ss_pred             eEHHHHhc--CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CcceeEEEEEHHHHHHHHhcCCC-
Confidence            46899985  678999999999999999999999999999963             5  89999999999998765311 


Q ss_pred             chHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           86 EDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        86 ~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                            .+.+|+++|.++   +++++++ ++.+|++.|. ++++++||+++
T Consensus        69 ------~~~~v~~~m~~~---~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~  109 (141)
T 2rih_A           69 ------LDGPAMPIANSP---ITVLDTD-PVHVAAEKMRRHNIRHVVVVNK  109 (141)
T ss_dssp             ------TTSBSGGGCBCC---CEEETTS-BHHHHHHHHHHHTCSEEEEECT
T ss_pred             ------CCCCHHHHcCCC---CeEEcCC-CHHHHHHHHHHcCCeEEEEEcC
Confidence                  257899999865   9999999 9999999999 79999999864

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.62  E-value=2.4e-15  Score=132.77  Aligned_cols=137  Identities=15%  Similarity=0.203  Sum_probs=100.3

Q ss_pred             CCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCe-eEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhh
Q 013939          211 SSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSA-IAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQF  288 (433)
Q Consensus       211 ~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isa-vpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f  288 (433)
                      .++++  +|+++++++.+++++.+|+++|.+ ++++ +||+|+   +  +++|+||.+||+.....    .+        
T Consensus        16 ~~v~~--im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~---~--~~vGivt~~dl~~~~~~----~~--------   76 (157)
T 1o50_A           16 KDVCK--LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD---N--KLVGMIPVMHLLKVSGF----HF--------   76 (157)
T ss_dssp             HHHTT--SSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET---T--EEEEEEEHHHHHHHHHH----HH--------
T ss_pred             ccHhh--cccCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC---C--EEEEEEEHHHHHHHHhh----hH--------
Confidence            34554  799999999999999999999999 9999 999995   6  99999999999875310    00        


Q ss_pred             hhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCC
Q 013939          289 VMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKIT  368 (433)
Q Consensus       289 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~  368 (433)
                      ..++..   +..|..         .. ..         .....+                 +     ..|.. +++|+++
T Consensus        77 ~~~~~~---~~~~~~---------~~-~~---------~~~~~v-----------------~-----~im~~-~~~v~~~  111 (157)
T 1o50_A           77 FGFIPK---EELIRS---------SM-KR---------LIAKNA-----------------S-----EIMLD-PVYVHMD  111 (157)
T ss_dssp             HCCCC-------------------CC-CC---------CSSCBH-----------------H-----HHCBC-CCCBCTT
T ss_pred             Hhhhcc---HHHHHH---------HH-HH---------HcCCcH-----------------H-----HHcCC-CeEECCC
Confidence            001100   000000         00 00         000000                 0     23566 9999999


Q ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          369 SSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       369 ~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      ++|.+|+.+|.+++++++||||++  |+++||||+.||++++.+.
T Consensus       112 ~~l~~a~~~m~~~~~~~lpVvd~~--g~~vGiit~~dll~~l~~~  154 (157)
T 1o50_A          112 TPLEEALKLMIDNNIQEMPVVDEK--GEIVGDLNSLEILLALWKG  154 (157)
T ss_dssp             SBHHHHHHHHHHHTCSEEEEECTT--SCEEEEEEHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHCCCcEEEEEcCC--CEEEEEEEHHHHHHHHHHh
Confidence            999999999999999999999976  9999999999999998764

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.62  E-value=1.1e-15  Score=134.65  Aligned_cols=125  Identities=15%  Similarity=0.211  Sum_probs=99.3

Q ss_pred             CCcccccCcC------CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhc
Q 013939          211 SSISSLGVIN------PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANL  283 (433)
Q Consensus       211 ~tV~~L~im~------~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l  283 (433)
                      +++++  +|+      ++++++.+++++.+|+++|.+ +++.+||+|   +|  +++|+||.+|+++.....        
T Consensus         7 ~~v~d--im~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~---~~--~~~Givt~~dl~~~~~~~--------   71 (157)
T 4fry_A            7 TTVAQ--ILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD---GD--DIAGIVTERDYARKVVLQ--------   71 (157)
T ss_dssp             CBHHH--HHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES---SS--SEEEEEEHHHHHHHSGGG--------
T ss_pred             HHHHH--HHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee---CC--EEEEEEEHHHHHHHHHhc--------
Confidence            44555  465      557999999999999999999 999999966   57  999999999998653100        


Q ss_pred             cchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCe
Q 013939          284 SAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPL  363 (433)
Q Consensus       284 ~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  363 (433)
                                .. .+              ..               ..+                 +     ..|..+++
T Consensus        72 ----------~~-~~--------------~~---------------~~v-----------------~-----~~m~~~~~   89 (157)
T 4fry_A           72 ----------ER-SS--------------KA---------------TRV-----------------E-----EIMTAKVR   89 (157)
T ss_dssp             ----------TC-CS--------------SS---------------CBH-----------------H-----HHSBSSCC
T ss_pred             ----------cC-Cc--------------cc---------------cCH-----------------H-----HHcCCCCc
Confidence                      00 00              00               000                 0     22567899


Q ss_pred             EecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          364 TCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       364 t~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      +|++++++.+++.+|.+++++++||+| +  |+++||||+.||++++.....
T Consensus        90 ~v~~~~~l~~~~~~m~~~~~~~lpVvd-~--g~~~Giit~~dil~~l~~~~~  138 (157)
T 4fry_A           90 YVEPSQSTDECMALMTEHRMRHLPVLD-G--GKLIGLISIGDLVKSVIADQQ  138 (157)
T ss_dssp             CBCTTSBHHHHHHHHHHHTCSEEEEEE-T--TEEEEEEEHHHHHHHHHTTCC
T ss_pred             EECCCCcHHHHHHHHHHcCCCEEEEEE-C--CEEEEEEEHHHHHHHHHHHHH
Confidence            999999999999999999999999999 5  899999999999999998655

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.62  E-value=5.3e-15  Score=127.04  Aligned_cols=126  Identities=14%  Similarity=0.159  Sum_probs=105.9

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      .|...+|+|+|.  ++++++++++|+.+|++.|.+++++++||+|.+             ++++|+|+..|+++.+....
T Consensus         3 ~l~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-------------~~~~Givt~~dl~~~~~~~~   67 (138)
T 2yzi_A            3 MDMKAPIKVYMT--KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-------------GNVVGFFTKSDIIRRVIVPG   67 (138)
T ss_dssp             CCTTSBGGGTCB--CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-------------SCEEEEEEHHHHHHHTTTTC
T ss_pred             chhhhhHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CcEEEEEeHHHHHHHHHhcC
Confidence            466778999986  678999999999999999999999999999853             79999999999985433221


Q ss_pred             CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939           84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS  162 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  162 (433)
                      .      ..+.+|+++|..+   ++++++++++.+|++.|. ++++++ |+++++                         
T Consensus        68 ~------~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g-------------------------  112 (138)
T 2yzi_A           68 L------PYDIPVERIMTRN---LITANVNTPLGEVLRKMAEHRIKHI-LIEEEG-------------------------  112 (138)
T ss_dssp             C------CTTSBGGGTCBCS---CCEEETTSBHHHHHHHHHHHTCSEE-EEEETT-------------------------
T ss_pred             C------cccCCHHHHhhCC---CeEECCCCcHHHHHHHHHhcCCCEE-EECCCC-------------------------
Confidence            1      2357899999865   899999999999999999 799999 876432                         


Q ss_pred             cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                           +++|+||+.|+++++.+
T Consensus       113 ---------------------~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A          113 ---------------------KIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             ---------------------EEEEEEEHHHHHHHHHC
T ss_pred             ---------------------CEEEEEEHHHHHHHHHH
Confidence                                 46899999999999864

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.61  E-value=3.6e-15  Score=131.27  Aligned_cols=125  Identities=18%  Similarity=0.233  Sum_probs=106.9

Q ss_pred             hhHhhhhcCC----CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            8 HVVGDLTVGK----PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         8 ~~v~DL~~~k----~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      .+|+|+|..+    ++++++++++|+.+|++.|.+++++++||.+              +++++|+||..||++++....
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~--------------~~~~~Givt~~dl~~~~~~~~   72 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD--------------GDDIAGIVTERDYARKVVLQE   72 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES--------------SSSEEEEEEHHHHHHHSGGGT
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee--------------CCEEEEEEEHHHHHHHHHhcc
Confidence            4699999755    6789999999999999999999999999965              279999999999999876431


Q ss_pred             CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939           84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS  162 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  162 (433)
                      .     ...+.+|+++|.++   ++++++++++.+|++.|. ++++++||+++ +                         
T Consensus        73 ~-----~~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-g-------------------------  118 (157)
T 4fry_A           73 R-----SSKATRVEEIMTAK---VRYVEPSQSTDECMALMTEHRMRHLPVLDG-G-------------------------  118 (157)
T ss_dssp             C-----CSSSCBHHHHSBSS---CCCBCTTSBHHHHHHHHHHHTCSEEEEEET-T-------------------------
T ss_pred             C-----CccccCHHHHcCCC---CcEECCCCcHHHHHHHHHHcCCCEEEEEEC-C-------------------------
Confidence            1     12358999999865   899999999999999999 79999999873 2                         


Q ss_pred             cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHc
Q 013939          163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGC  201 (433)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~  201 (433)
                                           +++|+||+.|+++++.+.
T Consensus       119 ---------------------~~~Giit~~dil~~l~~~  136 (157)
T 4fry_A          119 ---------------------KLIGLISIGDLVKSVIAD  136 (157)
T ss_dssp             ---------------------EEEEEEEHHHHHHHHHTT
T ss_pred             ---------------------EEEEEEEHHHHHHHHHHH
Confidence                                 358999999999999753

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.61  E-value=4.3e-15  Score=127.88  Aligned_cols=133  Identities=13%  Similarity=0.304  Sum_probs=106.4

Q ss_pred             cccchhHhhhh-cCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcC
Q 013939            4 VFIYHVVGDLT-VGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKS   82 (433)
Q Consensus         4 ~~~~~~v~DL~-~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~   82 (433)
                      .|...+++|+. ...++++++++++++.+|++.|.+++++++||+|.+             ++++|+|+..|+++++...
T Consensus         4 ~~~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-------------~~~~Givt~~dl~~~~~~~   70 (144)
T 2nyc_A            4 HFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-------------GYLINVYEAYDVLGLIKGG   70 (144)
T ss_dssp             GGGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-------------CBEEEEEEHHHHHHHHHTC
T ss_pred             chhhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCC-------------CcEEEEEcHHHHHHHhccc
Confidence            45667888943 233788999999999999999999999999999863             7999999999999987642


Q ss_pred             CCcchHHhhcCCcchhccccCC---CccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhcccccccccc
Q 013939           83 DCLEDQDKAMKTPVSQVIVPNN---SLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMD  158 (433)
Q Consensus        83 ~~l~~~~~~l~~pV~~Im~~~~---~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~  158 (433)
                      .     ....+.+|+++|....   .+++++++++++.+|++.|. ++++++||+++++                     
T Consensus        71 ~-----~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g---------------------  124 (144)
T 2nyc_A           71 I-----YNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG---------------------  124 (144)
T ss_dssp             ---------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTS---------------------
T ss_pred             c-----cccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCC---------------------
Confidence            1     1123578999997521   14899999999999999999 7999999986432                     


Q ss_pred             ccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          159 ASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                               +++|+||..|+++++.+
T Consensus       125 -------------------------~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A          125 -------------------------RLVGVLTLSDILKYILL  141 (144)
T ss_dssp             -------------------------BEEEEEEHHHHHHHHHH
T ss_pred             -------------------------CEEEEEEHHHHHHHHHh
Confidence                                     46899999999999865

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.61  E-value=4.2e-15  Score=127.45  Aligned_cols=123  Identities=21%  Similarity=0.205  Sum_probs=103.8

Q ss_pred             hHhhhhcCC-CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch
Q 013939            9 VVGDLTVGK-PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED   87 (433)
Q Consensus         9 ~v~DL~~~k-~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~   87 (433)
                      +|+|+|..+ ++++++++++++.+|++.|.+++++++||+| +             ++++|+||..||++++.....   
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-------------~~~~Givt~~dl~~~~~~~~~---   69 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-D-------------EKLVGILTERDFSRKSYLLDK---   69 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T-------------TEEEEEEEHHHHHHHGGGSSS---
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-------------CEEEEEEehHHHHHHHHHcCC---
Confidence            589999522 5789999999999999999999999999998 3             799999999999976543211   


Q ss_pred             HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccc
Q 013939           88 QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNN  166 (433)
Q Consensus        88 ~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~  166 (433)
                        ...+.+|+++|.++   ++++++++++.+|++.|. ++++++||++ ++                             
T Consensus        70 --~~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g-----------------------------  114 (135)
T 2rc3_A           70 --PVKDTQVKEIMTRQ---VAYVDLNNTNEDCMALITEMRVRHLPVLD-DG-----------------------------  114 (135)
T ss_dssp             --CGGGSBGGGTSBCS---CCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TT-----------------------------
T ss_pred             --CcccCCHHHhccCC---CeEECCCCcHHHHHHHHHHhCCCEEEEEe-CC-----------------------------
Confidence              12357899999865   899999999999999999 8999999987 32                             


Q ss_pred             cccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          167 LIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                       +.+|+||..|+++++.+
T Consensus       115 -----------------~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A          115 -----------------KVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             -----------------EEEEEEEHHHHHHHHHC
T ss_pred             -----------------EEEEEEEHHHHHHHHHh
Confidence                             35899999999999864

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.61  E-value=2e-15  Score=143.17  Aligned_cols=200  Identities=14%  Similarity=0.125  Sum_probs=128.7

Q ss_pred             cchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCc
Q 013939            6 IYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCL   85 (433)
Q Consensus         6 ~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l   85 (433)
                      ...+|+|+|.  ++++++++++++.+|+++|.+++++++||+|.+             ++++|+||..|+++++......
T Consensus         5 ~~~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-------------~~l~Giit~~di~~~~~~~~~~   69 (245)
T 3l2b_A            5 VKLKVEDLEM--DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-------------NHLLGMLSTSNITATYMDIWDS   69 (245)
T ss_dssp             CCCBGGGSCC--BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-------------CBEEEEEEHHHHHHHHHCCCCT
T ss_pred             ccCcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CEEEEEEEHHHHHHHHHHhhhh
Confidence            3467999985  568999999999999999999999999999963             7999999999999987642110


Q ss_pred             ----------chHHhhcC------------------------CcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeE
Q 013939           86 ----------EDQDKAMK------------------------TPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRL  130 (433)
Q Consensus        86 ----------~~~~~~l~------------------------~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl  130 (433)
                                .+..+.++                        ..+.+.+..  +.++.+..   -.++.+.+. +|+..+
T Consensus        70 ~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~--~~ivIvgd---r~~~~~~~i~~~~~~l  144 (245)
T 3l2b_A           70 NILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISE--GDIAIAGD---RAEIQAELIELKVSLL  144 (245)
T ss_dssp             THHHHTTCCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCT--TCEEEECS---CHHHHHHHHHTTCSEE
T ss_pred             hhhhhccCCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCC--CCEEEECC---CHHHHHHHHHcCCCEE
Confidence                      00111111                        011111221  23444422   356666666 788877


Q ss_pred             EeeecCcccccccchhhhccccccccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCC
Q 013939          131 LVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPL  210 (433)
Q Consensus       131 ~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~  210 (433)
                      ++......   .....-+.                               .......|.|..|.......-.      ..
T Consensus       145 iit~~~~~---~~~v~~~a-------------------------------~~~~~~~i~t~~d~~~~~~~~~------~~  184 (245)
T 3l2b_A          145 IVTGGHTP---SKEIIELA-------------------------------KKNNITVITTPHDSFTASRLIV------QS  184 (245)
T ss_dssp             EECTTCCC---CHHHHHHH-------------------------------HHHTCEEEECSSCHHHHHHHGG------GG
T ss_pred             EECCCCCC---CHHHHHHH-------------------------------HHcCCeEEEeCCChHHHHHHHh------cC
Confidence            66432110   00000000                               0012234566666554332100      12


Q ss_pred             CCcccccCcC-CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhc
Q 013939          211 SSISSLGVIN-PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKC  271 (433)
Q Consensus       211 ~tV~~L~im~-~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~  271 (433)
                      .++++  +|+ ++++++.+++++.+|+++|.+ +++++||||+  +|  +++|+||.+|+++.
T Consensus       185 ~~v~~--im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~--~~--~~~Giit~~dll~~  241 (245)
T 3l2b_A          185 LPVDY--VMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE--NN--KVVGSIARFHLIST  241 (245)
T ss_dssp             SBHHH--HSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT--TC--BEEEEEECC-----
T ss_pred             Cceee--EecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC--CC--eEEEEEEHHHhhch
Confidence            34665  698 899999999999999999999 9999999998  78  99999999999865

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.60  E-value=2.4e-15  Score=128.17  Aligned_cols=122  Identities=15%  Similarity=0.197  Sum_probs=104.1

Q ss_pred             chhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcc
Q 013939            7 YHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLE   86 (433)
Q Consensus         7 ~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~   86 (433)
                      .-+|+|+|.  ++++++++++++.+|++.|.+++++++||+|.              ++++|+||..||++++.+...  
T Consensus         4 s~~v~~~m~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--------------~~~~Givt~~dl~~~~~~~~~--   65 (128)
T 3gby_A            4 SVTFSYLAE--TDYPVFTLGGSTADAARRLAASGCACAPVLDG--------------ERYLGMVHLSRLLEGRKGWPT--   65 (128)
T ss_dssp             TCBGGGGCB--CCSCCEETTSBHHHHHHHHHHHTCSEEEEEET--------------TEEEEEEEHHHHHTTCSSSCC--
T ss_pred             ceEHHHhhc--CCcceECCCCCHHHHHHHHHHCCCcEEEEEEC--------------CEEEEEEEHHHHHHHHhhCCc--
Confidence            457899986  56899999999999999999999999999994              699999999999987643211  


Q ss_pred             hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccc
Q 013939           87 DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSN  165 (433)
Q Consensus        87 ~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~  165 (433)
                           .+.+|+++|.++   ++++.+++++.+|++.|. ++++++||+++++                            
T Consensus        66 -----~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g----------------------------  109 (128)
T 3gby_A           66 -----VKEKLGEELLET---VRSYRPGEQLFDNLISVAAAKCSVVPLADEDG----------------------------  109 (128)
T ss_dssp             -----TTCBCCGGGCBC---CCCBCTTSBGGGSHHHHHHCSSSEEEEECTTC----------------------------
T ss_pred             -----ccCcHHHHccCC---CcEECCCCCHHHHHHHHHhCCCcEEEEECCCC----------------------------
Confidence                 136899999865   899999999999999999 7899999986432                            


Q ss_pred             ccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          166 NLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                        +.+|+||+.|+++++.+
T Consensus       110 ------------------~~~Giit~~dll~~l~~  126 (128)
T 3gby_A          110 ------------------RYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             ------------------BEEEEEEHHHHHHHHHT
T ss_pred             ------------------CEEEEEEHHHHHHHHHh
Confidence                              46899999999999864

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.60  E-value=5.2e-15  Score=129.86  Aligned_cols=136  Identities=14%  Similarity=0.197  Sum_probs=108.4

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      .|...+|+|+|....+++++++++|+.+|++.|.+++++++||+|.+             ++++|+||..|++.++....
T Consensus         7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-------------~~~~Givt~~dl~~~~~~~~   73 (157)
T 2emq_A            7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS-------------YKLHGLISMTMMMDAILGLE   73 (157)
T ss_dssp             ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTT-------------CCEEEEEEHHHHHHHSBCSS
T ss_pred             hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCC-------------CCEEEEeeHHHHHHHHhccc
Confidence            35567899998643478999999999999999999999999999963             79999999999999876532


Q ss_pred             CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939           84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS  162 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  162 (433)
                      ... .......+|+++|..+   ++++++++++.+|++.|. +++  +||++++                          
T Consensus        74 ~~~-~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~--------------------------  121 (157)
T 2emq_A           74 RIE-FERLETMKVEEVMNRN---IPRLRLDDSLMKAVGLIVNHPF--VCVENDD--------------------------  121 (157)
T ss_dssp             SBC-GGGGGTCBGGGTCBCC---CCEEETTSBHHHHHHHHHHSSE--EEEECSS--------------------------
T ss_pred             ccc-hHHhcCCcHHHHhCCC---CceecCCCcHHHHHHHHhhCCE--EEEEcCC--------------------------
Confidence            221 1223468999999865   899999999999999999 566  8887542                          


Q ss_pred             cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCC
Q 013939          163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGA  204 (433)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~  204 (433)
                                          |+++|+||..|+++++.+....
T Consensus       122 --------------------g~~~Giit~~dil~~~~~~~~~  143 (157)
T 2emq_A          122 --------------------GYFAGIFTRREVLKQLNKQLHR  143 (157)
T ss_dssp             --------------------SSEEEEEEHHHHHHHHHHTTCC
T ss_pred             --------------------CeEEEEEEHHHHHHHHHHHhhc
Confidence                                2568999999999999764443

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.60  E-value=2e-15  Score=135.79  Aligned_cols=150  Identities=13%  Similarity=0.143  Sum_probs=103.2

Q ss_pred             CCCcccccCcCCC----eEEE--cCCCcHHHHHHhccc-CCCeeEEe--cCCCCCcceEEeecchhhhhhcchhHHHHHH
Q 013939          210 LSSISSLGVINPN----YSSI--EASVPAIEATLKAPG-DPSAIAVL--EPTSEDQYKIIGEISASKLWKCDYLAAAWAL  280 (433)
Q Consensus       210 ~~tV~~L~im~~~----vitv--~~~~~v~ea~~~M~~-~isavpVV--d~~~~g~~klvGiIS~~DL~~~~~~~~~~~~  280 (433)
                      ..++++  +|++.    ++++  .+++++.+|+++|.+ +++++|||  |+  +|  +++|+||.+||+.......... 
T Consensus        10 ~~~v~d--im~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~--~~--~lvGiit~~dl~~~~~~~~~~~-   82 (185)
T 2j9l_A           10 KTLAMD--VMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE--SQ--RLVGFVLRRDLIISIENARKKQ-   82 (185)
T ss_dssp             CCBHHH--HSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT--TC--BEEEEEEHHHHHHHHHHHHTSC-
T ss_pred             cCcHHH--HhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECC--CC--eEEEEEEHHHHHHHHHhhcccC-
Confidence            456666  68876    8888  999999999999999 99999999  55  77  9999999999987541100000 


Q ss_pred             hhccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCC
Q 013939          281 ANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRS  360 (433)
Q Consensus       281 ~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (433)
                      ..+.-..+ .+.... .+.             ..         ........                 ++     ..|..
T Consensus        83 ~~~~~~~~-~~~~~~-~~~-------------~~---------~~~~~~~~-----------------v~-----~im~~  116 (185)
T 2j9l_A           83 DGVVSTSI-IYFTEH-SPP-------------LP---------PYTPPTLK-----------------LR-----NILDL  116 (185)
T ss_dssp             SCCCTTCE-EECSSS-CCC-------------CC---------TTCCCCEE-----------------CG-----GGEES
T ss_pred             CCccccce-eecccC-Ccc-------------cc---------cccccCcc-----------------HH-----HhhCc
Confidence            00000000 000000 000             00         00000000                 00     33577


Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          361 TPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       361 ~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      ++++|+++++|.+|+.+|.+++++++||+| +  |+++||||+.||++++.....
T Consensus       117 ~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~--g~~vGiit~~dll~~l~~~~~  168 (185)
T 2j9l_A          117 SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-N--GRLLGIITKKDVLKHIAQMAN  168 (185)
T ss_dssp             SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-T--TEEEEEEEHHHHHHHHHHHCC
T ss_pred             CCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-C--CEEEEEEEHHHHHHHHHHhhc
Confidence            899999999999999999999999999999 5  899999999999999987544

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.60  E-value=1.4e-15  Score=134.50  Aligned_cols=134  Identities=14%  Similarity=0.136  Sum_probs=102.5

Q ss_pred             CCCCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhh
Q 013939          206 APLPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALAN  282 (433)
Q Consensus       206 ~~l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~  282 (433)
                      ..+...++++  +|.+  +++++.+++++.+|+++|.+ +++++||||+  +|  +++|+||.+||+......       
T Consensus         9 ~~l~~~~v~~--im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--~~--~lvGivt~~dl~~~~~~~-------   75 (159)
T 1yav_A            9 DQLLEATVGQ--FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP--SY--RLHGLIGTNMIMNSIFGL-------   75 (159)
T ss_dssp             --CTTCBHHH--HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT--TC--BEEEEEEHHHHHHHHBCS-------
T ss_pred             HHHhHhhHHH--HhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC--CC--CEEEEeEHHHHHHHhhhh-------
Confidence            3445567776  6887  89999999999999999999 9999999998  78  999999999998643000       


Q ss_pred             ccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCC
Q 013939          283 LSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTP  362 (433)
Q Consensus       283 l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (433)
                         ..+ .+                     .....            ..+                 +     ..|..++
T Consensus        76 ---~~~-~~---------------------~~~~~------------~~v-----------------~-----~~m~~~~   96 (159)
T 1yav_A           76 ---ERI-EF---------------------EKLDQ------------ITV-----------------E-----EVMLTDI   96 (159)
T ss_dssp             ---SSB-CG---------------------GGTTT------------SBH-----------------H-----HHSBCSC
T ss_pred             ---ccc-ch---------------------hhhcc------------CCH-----------------H-----HhcCCCC
Confidence               000 00                     00000            000                 0     2357789


Q ss_pred             eEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          363 LTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       363 it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      ++|.+++++.+|+.+|.++++  +||||++  |+++||||+.||++++.+.-.
T Consensus        97 ~~v~~~~~l~~a~~~m~~~~~--lpVvd~~--g~~vGiit~~dil~~~~~~~~  145 (159)
T 1yav_A           97 PRLHINDPIMKGFGMVINNGF--VCVENDE--QVFEGIFTRRVVLKELNKHIR  145 (159)
T ss_dssp             CEEETTSBHHHHHHHTTTCSE--EEEECTT--CBEEEEEEHHHHHHHHHHHC-
T ss_pred             ceEcCCCCHHHHHHHHHhCCE--EEEEeCC--CeEEEEEEHHHHHHHHHHHHH
Confidence            999999999999999999987  9999987  999999999999999987544

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.60  E-value=1.7e-15  Score=135.45  Aligned_cols=134  Identities=23%  Similarity=0.336  Sum_probs=106.5

Q ss_pred             hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC----
Q 013939            8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD----   83 (433)
Q Consensus         8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~----   83 (433)
                      .+|+|+|..+.+++++++++|+.+|+++|.+++++++||+|.+             ++++|+||..||++++....    
T Consensus         4 ~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-------------~~~~Givt~~dl~~~~~~~~~~~~   70 (180)
T 3sl7_A            4 YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN-------------WTLVGVVSDYDLLALDSISGRSQN   70 (180)
T ss_dssp             CBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-------------CBEEEEEEHHHHTCC---------
T ss_pred             eeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCC-------------CeEEEEEEHHHHHhhhhhccccCC
Confidence            3689999744479999999999999999999999999999963             79999999999986432100    


Q ss_pred             -------------Ccch----HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccch
Q 013939           84 -------------CLED----QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRF  145 (433)
Q Consensus        84 -------------~l~~----~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~  145 (433)
                                   .+..    .....+.+|+++|...   ++++.+++++.+|++.|. ++++++||+++++        
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g--------  139 (180)
T 3sl7_A           71 DTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPS---PLVVRDSTNLEDAARLLLETKFRRLPVVDADG--------  139 (180)
T ss_dssp             ----------CCCSHHHHHHHHHTTTTCBHHHHSEES---CCCEETTSBHHHHHHHHTTSTTCEEEEECTTC--------
T ss_pred             cccccccccchhhhhHHHHHHHhccccccHHHHhCCC---ceEeCCCCcHHHHHHHHHHcCCCEEEEECCCC--------
Confidence                         0000    0122467999999865   889999999999999999 7899999986432        


Q ss_pred             hhhccccccccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccC
Q 013939          146 SILYNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLG  203 (433)
Q Consensus       146 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~  203 (433)
                                                            +++|+||+.||++++.+...
T Consensus       140 --------------------------------------~~vGiit~~dil~~~~~~~~  159 (180)
T 3sl7_A          140 --------------------------------------KLIGILTRGNVVRAALQIKR  159 (180)
T ss_dssp             --------------------------------------BEEEEEEHHHHHHHHHHHHH
T ss_pred             --------------------------------------eEEEEEEHHHHHHHHHHHhh
Confidence                                                  46899999999999976443

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.59  E-value=5e-15  Score=130.86  Aligned_cols=133  Identities=15%  Similarity=0.245  Sum_probs=108.7

Q ss_pred             ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC
Q 013939            5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC   84 (433)
Q Consensus         5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~   84 (433)
                      |...+|+|+|..+.+++++++++++.+|++.|.+++++++||+|.+             ++++|+||..||+.++.....
T Consensus        11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-------------~~lvGivt~~dl~~~~~~~~~   77 (159)
T 1yav_A           11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-------------YRLHGLIGTNMIMNSIFGLER   77 (159)
T ss_dssp             CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-------------CBEEEEEEHHHHHHHHBCSSS
T ss_pred             HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCC-------------CCEEEEeEHHHHHHHhhhhcc
Confidence            5567899998643378999999999999999999999999999863             799999999999998865322


Q ss_pred             cchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcc
Q 013939           85 LEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSS  163 (433)
Q Consensus        85 l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~  163 (433)
                      + ........+|+++|.++   ++++.+++++.+|++.|. +++  +||++++                           
T Consensus        78 ~-~~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~---------------------------  124 (159)
T 1yav_A           78 I-EFEKLDQITVEEVMLTD---IPRLHINDPIMKGFGMVINNGF--VCVENDE---------------------------  124 (159)
T ss_dssp             B-CGGGTTTSBHHHHSBCS---CCEEETTSBHHHHHHHTTTCSE--EEEECTT---------------------------
T ss_pred             c-chhhhccCCHHHhcCCC---CceEcCCCCHHHHHHHHHhCCE--EEEEeCC---------------------------
Confidence            2 11223468999999865   899999999999999998 555  8887642                           


Q ss_pred             ccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHcc
Q 013939          164 SNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCL  202 (433)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~  202 (433)
                                         ++++|+||+.|+++++.+..
T Consensus       125 -------------------g~~vGiit~~dil~~~~~~~  144 (159)
T 1yav_A          125 -------------------QVFEGIFTRRVVLKELNKHI  144 (159)
T ss_dssp             -------------------CBEEEEEEHHHHHHHHHHHC
T ss_pred             -------------------CeEEEEEEHHHHHHHHHHHH
Confidence                               24689999999999997643

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.59  E-value=2.9e-15  Score=140.13  Aligned_cols=156  Identities=13%  Similarity=0.061  Sum_probs=100.9

Q ss_pred             hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939            9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ   88 (433)
Q Consensus         9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~   88 (433)
                      ++++++.  ++++++++++|+.+|+++|.+++++++||+|.+             ++++|+||..|++.++.        
T Consensus        14 ~~~~~~~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-------------~~l~Givt~~dl~~~~~--------   70 (213)
T 1vr9_A           14 KVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDRE-------------GHFRGVVNKEDLLDLDL--------   70 (213)
T ss_dssp             BGGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-------------SBEEEEEEGGGGTTSCT--------
T ss_pred             CHHHhhc--CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC-------------CEEEEEEEHHHHHhhcC--------
Confidence            4667664  678999999999999999999999999999853             79999999999976431        


Q ss_pred             HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccccc
Q 013939           89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNL  167 (433)
Q Consensus        89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  167 (433)
                          +.+|+++|..+   ++++++++++.+|+++|. ++++++||+++++                              
T Consensus        71 ----~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g------------------------------  113 (213)
T 1vr9_A           71 ----DSSVFNKVSLP---DFFVHEEDNITHALLLFLEHQEPYLPVVDEEM------------------------------  113 (213)
T ss_dssp             ----TSBSGGGCBCT---TCCEETTSBHHHHHHHHHHCCCSEEEEECTTC------------------------------
T ss_pred             ----CCcHHHHccCC---CEEECCCCcHHHHHHHHHHhCCCEEEEEcCCC------------------------------
Confidence                46899999865   899999999999999999 7899999986532                              


Q ss_pred             ccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCCC-eEEEcCCCcHHHHHHhccc-CCCe
Q 013939          168 IANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPN-YSSIEASVPAIEATLKAPG-DPSA  245 (433)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~-vitv~~~~~v~ea~~~M~~-~isa  245 (433)
                                      +++|+||..|+++.+..... ...          .+..- +.+.....++.+|+++|.+ ++..
T Consensus       114 ----------------~lvGiit~~Dil~~~~~~~~-~~~----------~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~  166 (213)
T 1vr9_A          114 ----------------RLKGAVSLHDFLEALIEALA-MDV----------PGIRFSVLLEDKPGELRKVVDALALSNINI  166 (213)
T ss_dssp             ----------------BEEEEEEHHHHHHHHHHSCC--------------------------------------------
T ss_pred             ----------------EEEEEEEHHHHHHHHHHHhc-CCC----------CcEEEEEEeCCCCccHHHHHHHHHHCCCcE
Confidence                            46899999999998864221 110          11111 1122344458999999999 8999


Q ss_pred             eEEecC
Q 013939          246 IAVLEP  251 (433)
Q Consensus       246 vpVVd~  251 (433)
                      ++|+..
T Consensus       167 l~V~~~  172 (213)
T 1vr9_A          167 LSVITT  172 (213)
T ss_dssp             ------
T ss_pred             EEEEEE
Confidence            998875

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.59  E-value=7e-15  Score=130.59  Aligned_cols=129  Identities=18%  Similarity=0.229  Sum_probs=105.6

Q ss_pred             chhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC--
Q 013939            7 YHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC--   84 (433)
Q Consensus         7 ~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~--   84 (433)
                      ..+|+|+|.  ++++++++++|+.+|+++|.+++++++||+|.+             ++++|+||..||+.++.....  
T Consensus         4 ~~~v~dim~--~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-------------~~lvGivt~~dl~~~~~~~~~~~   68 (160)
T 2o16_A            4 MIKVEDMMT--RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-------------KKLLGIVSQRDLLAAQESSLQRS   68 (160)
T ss_dssp             CCBGGGTSE--ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-------------CBEEEEEEHHHHHHHHHHHCC--
T ss_pred             cCcHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CcEEEEEeHHHHHHHHHHhhccc
Confidence            457899986  578999999999999999999999999999863             799999999999998753100  


Q ss_pred             cchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcc
Q 013939           85 LEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSS  163 (433)
Q Consensus        85 l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~  163 (433)
                      ..........+|+++|..+   +++++++++|.+|++.|. ++++++||+++ +                          
T Consensus        69 ~~~~~~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g--------------------------  118 (160)
T 2o16_A           69 AQGDSLAFETPLFEVMHTD---VTSVAPQAGLKESAIYMQKHKIGCLPVVAK-D--------------------------  118 (160)
T ss_dssp             -------CCCBHHHHSCSC---EEEBCTTSBHHHHHHHHHHTTCSCEEEEET-T--------------------------
T ss_pred             ccccchhcccCHHHHhcCC---CeEECCCCCHHHHHHHHHHhCCCEEEEEEC-C--------------------------
Confidence            0000123468999999865   999999999999999999 78999999865 2                          


Q ss_pred             ccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          164 SNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                          +++|+||..||++++.+
T Consensus       119 --------------------~lvGiit~~dil~~~~~  135 (160)
T 2o16_A          119 --------------------VLVGIITDSDFVTIAIN  135 (160)
T ss_dssp             --------------------EEEEEECHHHHHHHHHH
T ss_pred             --------------------EEEEEEEHHHHHHHHHH
Confidence                                35899999999999875

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.59  E-value=2e-15  Score=128.90  Aligned_cols=107  Identities=23%  Similarity=0.285  Sum_probs=89.3

Q ss_pred             ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHH-HhhcCC
Q 013939            5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVA-FLAKSD   83 (433)
Q Consensus         5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~-~l~~~~   83 (433)
                      |.-.+|+|+|.  ++++++++++|+.+|++.|.+++++++||+|.+             ++++|+|+..|++. ++.++.
T Consensus         5 ~~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-------------~~~~Givt~~dl~~~~~~~~~   69 (133)
T 1y5h_A            5 FTMTTARDIMN--AGVTCVGEHETLTAAAQYMREHDIGALPICGDD-------------DRLHGMLTDRDIVIKGLAAGL   69 (133)
T ss_dssp             ---CCHHHHSE--ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-------------GBEEEEEEHHHHHHTTGGGTC
T ss_pred             hhhcCHHHHhc--CCceEeCCCCCHHHHHHHHHHhCCCeEEEECCC-------------CeEEEEEeHHHHHHHHHhcCC
Confidence            34467999996  568999999999999999999999999999853             79999999999994 554321


Q ss_pred             CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      .      ..+.+|+++|..+   ++++++++++.+|++.|. ++++++||.++
T Consensus        70 ~------~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  113 (133)
T 1y5h_A           70 D------PNTATAGELARDS---IYYVDANASIQEMLNVMEEHQVRRVPVISE  113 (133)
T ss_dssp             C------TTTSBHHHHHTTC---CCCEETTCCHHHHHHHHHHHTCSEEEEEET
T ss_pred             C------ccccCHHHHhcCC---CEEECCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            1      1247899999865   899999999999999999 89999999875

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.58  E-value=4.7e-15  Score=129.83  Aligned_cols=105  Identities=18%  Similarity=0.253  Sum_probs=91.4

Q ss_pred             hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939            9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ   88 (433)
Q Consensus         9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~   88 (433)
                      +|+|+|....+++++++++|+.+|++.|.++++.++||+|.+             ++++|+||..||++++.+...    
T Consensus        29 ~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-------------~~~~Givt~~dl~~~~~~~~~----   91 (149)
T 3k2v_A           29 RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDD-------------MNIIGIFTDGDLRRVFDTGVD----   91 (149)
T ss_dssp             BGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT-------------CBEEEEEEHHHHHHHHCSSSC----
T ss_pred             CHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC-------------CcEEEEecHHHHHHHHhcCCC----
Confidence            789998632378999999999999999999999999999963             799999999999998865322    


Q ss_pred             HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                        ..+.+|+++|..+   ++++.+++++.+|++.|. ++++++||+++
T Consensus        92 --~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  134 (149)
T 3k2v_A           92 --MRDASIADVMTRG---GIRIRPGTLAVDALNLMQSRHITCVLVADG  134 (149)
T ss_dssp             --CTTCBHHHHSEES---CCEECTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             --cccCcHHHHcCCC---CeEECCCCCHHHHHHHHHHcCCCEEEEecC
Confidence              2358999999865   899999999999999999 79999999865

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.58  E-value=4.5e-15  Score=130.75  Aligned_cols=133  Identities=14%  Similarity=0.176  Sum_probs=98.8

Q ss_pred             CCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHh---hccc
Q 013939          210 LSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALA---NLSA  285 (433)
Q Consensus       210 ~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~---~l~~  285 (433)
                      ..++++  +|+++++++.+++++.+|+++|.+ +++++||||+.++|  +++|+||.+||+....... ....   ..++
T Consensus        12 ~~~v~d--im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~--~~~Givt~~dl~~~~~~~~-~~~~~~~~~~v   86 (164)
T 2pfi_A           12 HVRVEH--FMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQ--ILVGIVQRAQLVQALQAEP-PSRAPGHQQCL   86 (164)
T ss_dssp             SCBHHH--HCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTC--BEEEEEEHHHHHHHHHC--------CCCCBH
T ss_pred             CCCHHH--HcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCC--EEEEEEEHHHHHHHHHhhc-cccCCcccchh
Confidence            455665  699999999999999999999999 99999999941147  9999999999986531100 0000   0000


Q ss_pred             hhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEe
Q 013939          286 GQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTC  365 (433)
Q Consensus       286 ~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~  365 (433)
                      .+++.                                       ...                       . ....+++|
T Consensus        87 ~~~m~---------------------------------------~~~-----------------------~-~~~~~~~v  103 (164)
T 2pfi_A           87 QDILA---------------------------------------RGC-----------------------P-TEPVTLTL  103 (164)
T ss_dssp             HHHHH---------------------------------------TTC-----------------------C-CBCCCCCE
T ss_pred             hhhhc---------------------------------------ccc-----------------------c-ccCCceEE
Confidence            00000                                       000                       0 01227899


Q ss_pred             cCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          366 KITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       366 ~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      ++++++.+|+.+|.+++++++||+| +  |+++||||..||++++...
T Consensus       104 ~~~~~l~~~~~~m~~~~~~~lpVvd-~--g~l~Giit~~dil~~~~~~  148 (164)
T 2pfi_A          104 FSETTLHQAQNLFKLLNLQSLFVTS-R--GRAVGCVSWVEMKKAISNL  148 (164)
T ss_dssp             ETTCBHHHHHHHHHHTTCSEEEEEE-T--TEEEEEEEHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHhCCCEEEEEE-C--CEEEEEEEHHHHHHHHHhh
Confidence            9999999999999999999999999 5  8999999999999999874

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.57  E-value=9e-15  Score=132.69  Aligned_cols=125  Identities=13%  Similarity=0.123  Sum_probs=105.3

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      .|...+|+|+|...++++++++++|+.+|++.|.+++++++||+|.+            .++++|+|+..||+.++..+ 
T Consensus        32 ~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~------------~~~lvGivt~~Dl~~~~~~~-   98 (173)
T 3ocm_A           32 TLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGS------------LDEVVGIGRAKDLVADLITE-   98 (173)
T ss_dssp             HHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSS------------TTSEEEEEEHHHHHHHHHHH-
T ss_pred             ccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCC------------CCCEEEEEEHHHHHHHHhcC-
Confidence            35667899999755679999999999999999999999999999853            26999999999999987532 


Q ss_pred             CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939           84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS  162 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  162 (433)
                              .+.+|+ +| .   +++++.+++++.+|++.|. ++++++||+++.+                         
T Consensus        99 --------~~~~v~-~~-~---~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g-------------------------  140 (173)
T 3ocm_A           99 --------GRVRRN-RL-R---DPIIVHESIGILRLMDTLKRSRGQLVLVADEFG-------------------------  140 (173)
T ss_dssp             --------SSCCGG-GS-B---CCCEECGGGCHHHHHHHHHHSTTCCEEEECTTC-------------------------
T ss_pred             --------CcchhH-hc-C---CCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCC-------------------------
Confidence                    146788 55 3   3789999999999999999 7899999986432                         


Q ss_pred             cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                           +++||||..||++.+.+
T Consensus       141 ---------------------~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          141 ---------------------AIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             ---------------------CEEEEECHHHHHHHHHC
T ss_pred             ---------------------CEEEEEeHHHHHHHHhC
Confidence                                 46899999999999974

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.56  E-value=4.3e-14  Score=124.70  Aligned_cols=130  Identities=15%  Similarity=0.176  Sum_probs=105.0

Q ss_pred             ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCc-ceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhc--
Q 013939            5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECG-IPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAK--   81 (433)
Q Consensus         5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s-~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~--   81 (433)
                      |...+|+|+|.  ++++++++++|+.+|++.|.++++++ +||+|.             + +++|+||..||++++..  
T Consensus        13 ~~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~-------------~-~~vGivt~~dl~~~~~~~~   76 (157)
T 1o50_A           13 MKVKDVCKLIS--LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-------------N-KLVGMIPVMHLLKVSGFHF   76 (157)
T ss_dssp             CBHHHHTTSSC--CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-------------T-EEEEEEEHHHHHHHHHHHH
T ss_pred             hccccHhhccc--CCCceECCCCCHHHHHHHHHhCCCCccEEEEEC-------------C-EEEEEEEHHHHHHHHhhhH
Confidence            44567899885  67899999999999999999999999 999985             3 99999999999997641  


Q ss_pred             ------CCCcch-HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccc
Q 013939           82 ------SDCLED-QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKW  153 (433)
Q Consensus        82 ------~~~l~~-~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~  153 (433)
                            ...+.. .......+|+++|..    ++++++++++.+|++.|. ++++++||+++++                
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~v~~im~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g----------------  136 (157)
T 1o50_A           77 FGFIPKEELIRSSMKRLIAKNASEIMLD----PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKG----------------  136 (157)
T ss_dssp             HCCCC-------CCCCCSSCBHHHHCBC----CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTS----------------
T ss_pred             HhhhccHHHHHHHHHHHcCCcHHHHcCC----CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCC----------------
Confidence                  000000 011235789999983    789999999999999999 8999999986432                


Q ss_pred             cccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          154 LKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       154 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                                    +++|+||+.|+++++.+
T Consensus       137 ------------------------------~~vGiit~~dll~~l~~  153 (157)
T 1o50_A          137 ------------------------------EIVGDLNSLEILLALWK  153 (157)
T ss_dssp             ------------------------------CEEEEEEHHHHHHHHHH
T ss_pred             ------------------------------EEEEEEEHHHHHHHHHH
Confidence                                          46899999999999875

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.55  E-value=3.5e-15  Score=132.17  Aligned_cols=108  Identities=17%  Similarity=0.273  Sum_probs=91.9

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      .|...+|+|+|...++++++++++|+.+|++.|.+++++++||+|.+            +++++|+||..|++.++.++ 
T Consensus        34 ~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~------------~~~lvGivt~~dl~~~~~~~-  100 (156)
T 3oi8_A           34 DFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGED------------KDEVLGILHAKDLLKYMFNP-  100 (156)
T ss_dssp             HHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS------------TTCEEEEEEGGGGGGGSSCG-
T ss_pred             ccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCC------------CCcEEEEEEHHHHHHHHHcC-
Confidence            35567899999644579999999999999999999999999999864            25999999999998875432 


Q ss_pred             CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939           84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV  136 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~  136 (433)
                              .+.+|+++|..    ++++.+++++.+|++.|. ++++++||+++.
T Consensus       101 --------~~~~v~~im~~----~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~  142 (156)
T 3oi8_A          101 --------EQFHLKSILRP----AVFVPEGKSLTALLKEFREQRNHMAIVIDEY  142 (156)
T ss_dssp             --------GGCCHHHHCBC----CCEEETTSBHHHHHHHHHHTTCCEEEEECTT
T ss_pred             --------CcccHHHHcCC----CEEECCCCCHHHHHHHHHhcCCeEEEEECCC
Confidence                    35789999963    789999999999999999 789999998653

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.55  E-value=2.1e-14  Score=130.30  Aligned_cols=106  Identities=19%  Similarity=0.245  Sum_probs=91.1

Q ss_pred             chhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcc
Q 013939            7 YHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLE   86 (433)
Q Consensus         7 ~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~   86 (433)
                      ..+|+|+|.  ++++++++++|+.+|+++|.+++++++||+|.+             ++++|+|+..||+.++.....  
T Consensus         8 ~~~v~~im~--~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~-------------g~~vGivt~~dl~~~~~~~~~--   70 (184)
T 1pvm_A            8 FMRVEKIMN--SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-------------GNDVGLLSERSIIKRFIPRNK--   70 (184)
T ss_dssp             CCBGGGTSB--TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-------------SCEEEEEEHHHHHHHTGGGCC--
T ss_pred             ccCHHHhcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CcEEEEEeHHHHHHHHhhccc--
Confidence            367999986  678999999999999999999999999999853             799999999999998764211  


Q ss_pred             hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           87 DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        87 ~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                         .....+|+++|..+   ++++.+++++.+|++.|. ++++++||+++
T Consensus        71 ---~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  114 (184)
T 1pvm_A           71 ---KPDEVPIRLVMRKP---IPKVKSDYDVKDVAAYLSENGLERCAVVDD  114 (184)
T ss_dssp             ---CGGGSBGGGTSBSS---CCEEETTCBHHHHHHHHHHHTCSEEEEECT
T ss_pred             ---CcccCCHHHHhCCC---CcEECCCCCHHHHHHHHHHcCCcEEEEEcC
Confidence               12247899999864   899999999999999999 79999999864

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.55  E-value=3.5e-14  Score=127.66  Aligned_cols=135  Identities=18%  Similarity=0.235  Sum_probs=106.6

Q ss_pred             cccchhHhhhhcCCC--CeEEE--cCCccHHHHHHHHHhcCCCcceee--ccCCCccccccCcCCCCeEEEEEeHHHHHH
Q 013939            4 VFIYHVVGDLTVGKP--ELAEF--YETETVEAAIKAIGESTECGIPVW--KKKTHVGIIENGEMRQQRFVGILNSFDIVA   77 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~--~lVtv--~~~~tV~eAl~~L~e~~I~s~PVv--d~~~~~~~~~~~~~~~~~~VGivt~~DIl~   77 (433)
                      .+...+|+|+|....  +++++  ++++++.+|+++|.+++++++||+  |.             +++++|+||..|++.
T Consensus         7 ~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~-------------~~~lvGiit~~dl~~   73 (185)
T 2j9l_A            7 FAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE-------------SQRLVGFVLRRDLII   73 (185)
T ss_dssp             --CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT-------------TCBEEEEEEHHHHHH
T ss_pred             hhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECC-------------CCeEEEEEEHHHHHH
Confidence            355678999997442  27888  999999999999999999999999  44             379999999999999


Q ss_pred             HhhcCC----Ccch--------------HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcc
Q 013939           78 FLAKSD----CLED--------------QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVW  138 (433)
Q Consensus        78 ~l~~~~----~l~~--------------~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~  138 (433)
                      ++....    .+..              .......+|+++|...   ++++.++++|.+|++.|. ++++++||+++ + 
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-g-  148 (185)
T 2j9l_A           74 SIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS---PFTVTDLTPMEIVVDIFRKLGLRQCLVTHN-G-  148 (185)
T ss_dssp             HHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCCEECGGGEESS---CCEEETTSBHHHHHHHHHHHTCSEEEEEET-T-
T ss_pred             HHHhhcccCCCccccceeecccCCcccccccccCccHHHhhCcC---CeEeCCCCCHHHHHHHHHhCCCcEEEEEEC-C-
Confidence            875310    0000              0012346899999865   899999999999999999 89999999862 2 


Q ss_pred             cccccchhhhccccccccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHc
Q 013939          139 KGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGC  201 (433)
Q Consensus       139 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~  201 (433)
                                                                   +++|+||..||++++.+.
T Consensus       149 ---------------------------------------------~~vGiit~~dll~~l~~~  166 (185)
T 2j9l_A          149 ---------------------------------------------RLLGIITKKDVLKHIAQM  166 (185)
T ss_dssp             ---------------------------------------------EEEEEEEHHHHHHHHHHH
T ss_pred             ---------------------------------------------EEEEEEEHHHHHHHHHHh
Confidence                                                         458999999999999764

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.54  E-value=4.4e-14  Score=124.38  Aligned_cols=136  Identities=13%  Similarity=0.152  Sum_probs=107.2

Q ss_pred             ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC
Q 013939            5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC   84 (433)
Q Consensus         5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~   84 (433)
                      +...+|+|+|.  ++++++++++|+.+|+++|.+++++++||+|.+.           +++++|+||..||+.++.....
T Consensus        10 ~~~~~v~dim~--~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~-----------~~~~~Givt~~dl~~~~~~~~~   76 (164)
T 2pfi_A           10 SHHVRVEHFMN--HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTE-----------SQILVGIVQRAQLVQALQAEPP   76 (164)
T ss_dssp             CCSCBHHHHCB--CCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTT-----------TCBEEEEEEHHHHHHHHHC---
T ss_pred             ccCCCHHHHcC--CCCeEECCCCcHHHHHHHHHhCCCCceeEEecCC-----------CCEEEEEEEHHHHHHHHHhhcc
Confidence            34568999986  5789999999999999999999999999998511           2799999999999998754311


Q ss_pred             cchHHhhcCCcchhccccCC--Cc-cEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhcccccccccccc
Q 013939           85 LEDQDKAMKTPVSQVIVPNN--SL-LKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDAS  160 (433)
Q Consensus        85 l~~~~~~l~~pV~~Im~~~~--~~-~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~  160 (433)
                      ..  ......++.++|....  .+ ++++++++++.+|++.|. ++++++||+++ +                       
T Consensus        77 ~~--~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-g-----------------------  130 (164)
T 2pfi_A           77 SR--APGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSR-G-----------------------  130 (164)
T ss_dssp             ------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEET-T-----------------------
T ss_pred             cc--CCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEEC-C-----------------------
Confidence            00  0113468999997531  12 688999999999999999 78999999873 2                       


Q ss_pred             CccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHcc
Q 013939          161 NSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCL  202 (433)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~  202 (433)
                                             +++|+||+.|+++++.+..
T Consensus       131 -----------------------~l~Giit~~dil~~~~~~~  149 (164)
T 2pfi_A          131 -----------------------RAVGCVSWVEMKKAISNLT  149 (164)
T ss_dssp             -----------------------EEEEEEEHHHHHHHHHHHH
T ss_pred             -----------------------EEEEEEEHHHHHHHHHhhh
Confidence                                   3589999999999997643

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.53  E-value=3.2e-14  Score=139.26  Aligned_cols=121  Identities=17%  Similarity=0.184  Sum_probs=101.7

Q ss_pred             CCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc------CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHH
Q 013939          207 PLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG------DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWAL  280 (433)
Q Consensus       207 ~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~------~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~  280 (433)
                      .....++++  +|+++++++.+++++.+|++.|.+      +++.+||||+  +|  +++|+||.+|++...        
T Consensus       133 ~~~~~~v~~--iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~--~~--~lvGivt~~dll~~~--------  198 (286)
T 2oux_A          133 HYEDETAGA--IMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ--EN--HLVGVISLRDLIVND--------  198 (286)
T ss_dssp             TSCTTBHHH--HCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT--TC--BEEEEEEHHHHTTSC--------
T ss_pred             cCChHHHHH--hCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC--CC--eEEEEEEHHHHHcCC--------
Confidence            345567776  699999999999999999999987      4667999998  78  999999999997542        


Q ss_pred             hhccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCC
Q 013939          281 ANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRS  360 (433)
Q Consensus       281 ~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (433)
                      ...++.                                                                     ..|.+
T Consensus       199 ~~~~v~---------------------------------------------------------------------~im~~  209 (286)
T 2oux_A          199 DDTLIA---------------------------------------------------------------------DILNE  209 (286)
T ss_dssp             TTSBHH---------------------------------------------------------------------HHSBS
T ss_pred             CCCcHH---------------------------------------------------------------------HHcCC
Confidence            000000                                                                     22567


Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          361 TPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       361 ~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      ++++|++++++.+|+.+|.+++++++||||++  |+++||||..||++.+..
T Consensus       210 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~--g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          210 RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYD--DHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEECTT--CBEEEEEEHHHHHHHHHH
T ss_pred             CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCC--CeEEEEEEHHHHHHHHHH
Confidence            89999999999999999999999999999987  999999999999999875

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.52  E-value=5e-14  Score=136.88  Aligned_cols=119  Identities=17%  Similarity=0.201  Sum_probs=98.9

Q ss_pred             CCCcccccCcCCCeEEEcCCCcHHHHHHhccc------CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhc
Q 013939          210 LSSISSLGVINPNYSSIEASVPAIEATLKAPG------DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANL  283 (433)
Q Consensus       210 ~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~------~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l  283 (433)
                      ..++++  +|+++++++.+++++.+|++.|.+      +++.+||||+  +|  +++|+||.+|++...        .. 
T Consensus       134 ~~~v~~--iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~--~~--~lvGivt~~dll~~~--------~~-  198 (278)
T 2yvy_A          134 EDEAGG--LMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE--KG--RLKGVLSLRDLIVAD--------PR-  198 (278)
T ss_dssp             TTBGGG--TCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT--TC--BEEEEEEHHHHHHSC--------TT-
T ss_pred             cchHHh--hcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECC--CC--CEEEEEEHHHHhcCC--------CC-
Confidence            455665  799999999999999999999987      4789999998  78  999999999987431        00 


Q ss_pred             cchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCe
Q 013939          284 SAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPL  363 (433)
Q Consensus       284 ~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  363 (433)
                                                   .                 .+  .                    ..|.++++
T Consensus       199 -----------------------------~-----------------~v--~--------------------~im~~~~~  210 (278)
T 2yvy_A          199 -----------------------------T-----------------RV--A--------------------EIMNPKVV  210 (278)
T ss_dssp             -----------------------------C-----------------BS--T--------------------TTSBSSCC
T ss_pred             -----------------------------C-----------------cH--H--------------------HHhCCCCe
Confidence                                         0                 00  0                    22577899


Q ss_pred             EecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          364 TCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       364 t~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      +|++++++.+|+.+|.+++++++||||++  |+++||||..||++.+...
T Consensus       211 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGivT~~Dil~~i~~e  258 (278)
T 2yvy_A          211 YVRTDTDQEEVARLMADYDFTVLPVVDEE--GRLVGIVTVDDVLDVLEAE  258 (278)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTT--SBEEEEEEHHHHHHHC---
T ss_pred             EEeCCCCHHHHHHHHHhcCCCEEEEEeCC--CeEEEEEEHHHHHHHHHHH
Confidence            99999999999999999999999999987  9999999999999998764

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.49  E-value=1.4e-13  Score=128.38  Aligned_cols=122  Identities=13%  Similarity=0.204  Sum_probs=105.3

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhc---CCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhh
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGES---TECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLA   80 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~---~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~   80 (433)
                      .|...+++++|.  ++++++++++|+.+|++.|.++   ++..+||+|..             ++++|+|+..|++..  
T Consensus        50 ~~~~~~v~~iM~--~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~-------------~~lvGivt~~dll~~--  112 (205)
T 3kxr_A           50 QYSENEIGRYTD--HQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEA-------------DKYLGTVRRYDIFKH--  112 (205)
T ss_dssp             HSCTTCGGGGCB--CCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTT-------------CBEEEEEEHHHHTTS--
T ss_pred             CCCcchHHhhcc--CceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCC-------------CeEEEEEEHHHHHhC--
Confidence            355678999995  6899999999999999999998   89999999963             799999999999642  


Q ss_pred             cCCCcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccc
Q 013939           81 KSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDA  159 (433)
Q Consensus        81 ~~~~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~  159 (433)
                                ..+.+|+++|..+   ++++.+++++.+|++.|. ++++++||+++.+                      
T Consensus       113 ----------~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g----------------------  157 (205)
T 3kxr_A          113 ----------EPHEPLISLLSED---SRALTANTTLLDAAEAIEHSREIELPVIDDAG----------------------  157 (205)
T ss_dssp             ----------CTTSBGGGGCCSS---CCCEETTSCHHHHHHHHHTSSCSEEEEECTTS----------------------
T ss_pred             ----------CCcchHHHHhcCC---CeEECCCCCHHHHHHHHHhcCCCEEEEEcCCC----------------------
Confidence                      1247899999865   899999999999999999 7899999987532                      


Q ss_pred             cCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHc
Q 013939          160 SNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGC  201 (433)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~  201 (433)
                                              +++||||..|+++.+.+.
T Consensus       158 ------------------------~lvGiIT~~Dil~~i~~e  175 (205)
T 3kxr_A          158 ------------------------ELIGRVTLRAATALVREH  175 (205)
T ss_dssp             ------------------------BEEEEEEHHHHHHHHHHH
T ss_pred             ------------------------eEEEEEEHHHHHHHHHHH
Confidence                                    468999999999999753

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.45  E-value=2.4e-13  Score=131.33  Aligned_cols=63  Identities=14%  Similarity=0.225  Sum_probs=54.9

Q ss_pred             ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhh
Q 013939            5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLA   80 (433)
Q Consensus         5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~   80 (433)
                      +..-+|+|+|.  ++++++.+++++.+|.++|.+++++++||+|..+           .++++|||+..||+.++.
T Consensus        10 ~~~~~v~diMt--~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~-----------~~~LvGiIt~~dl~~~l~   72 (250)
T 2d4z_A           10 KYNIQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPD-----------TNTLLGSIDRTEVEGLLQ   72 (250)
T ss_dssp             CSSCBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTT-----------TCBEEEEEEHHHHHHHHH
T ss_pred             cCCCChHHhcC--CCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCC-----------CCeEEEEEEHHHHHHHHH
Confidence            44567899985  6899999999999999999999999999999642           268999999999998764

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.45  E-value=1.1e-13  Score=146.60  Aligned_cols=138  Identities=13%  Similarity=0.061  Sum_probs=102.0

Q ss_pred             CCCCcccccCcCCCeEEEcCC-CcHHHHHHhccc-CCCeeEEec-CCCCCcceEEeecchhhhhhcchhHHHHHHhhccc
Q 013939          209 PLSSISSLGVINPNYSSIEAS-VPAIEATLKAPG-DPSAIAVLE-PTSEDQYKIIGEISASKLWKCDYLAAAWALANLSA  285 (433)
Q Consensus       209 ~~~tV~~L~im~~~vitv~~~-~~v~ea~~~M~~-~isavpVVd-~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~  285 (433)
                      ...+|++  +|+++++++.++ +++.+|+++|.+ +++.+|||| +  +|  +++|+||.+||++.....          
T Consensus       382 ~~~~V~d--iM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~--~g--~lvGiVt~~Dll~~l~~~----------  445 (527)
T 3pc3_A          382 WSLAIAE--LELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQD--DG--SVLGVVGQETLITQIVSM----------  445 (527)
T ss_dssp             TTSBGGG--GCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTT--TC--CEEEEEEHHHHHHHHHHH----------
T ss_pred             cCCcHHH--hCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECC--CC--EEEEEEEHHHHHHHHHhc----------
Confidence            3566776  699999999999 999999999999 999999999 6  67  999999999998653100          


Q ss_pred             hhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEe
Q 013939          286 GQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTC  365 (433)
Q Consensus       286 ~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~  365 (433)
                               ...               ..               ..+                 +     ..|++++++|
T Consensus       446 ---------~~~---------------~~---------------~~V-----------------~-----~im~~~~~~v  464 (527)
T 3pc3_A          446 ---------NRQ---------------QS---------------DPA-----------------I-----KALNKRVIRL  464 (527)
T ss_dssp             ---------CCC---------------TT---------------SBG-----------------G-----GGEETTCCEE
T ss_pred             ---------cCc---------------CC---------------CcH-----------------H-----HHhcCCCeEE
Confidence                     000               00               001                 0     2367899999


Q ss_pred             cCCCCHHHHHHHHHHcCCCEEEEEeCCC--CCeEEEEEeHHHHHHHHHhCCCCcCCCCCCccc
Q 013939          366 KITSSLAAVMAQMLSHRATHVWVTEDES--DDVLVGVVGYADILVAVTKQPAALTPANRTYEG  426 (433)
Q Consensus       366 ~p~~sL~~v~~~m~~~~vhrl~VVD~~~--~~~lvGIVs~~DIL~~i~~~~~~~~~~~~~~~~  426 (433)
                      +++++|.+++.+|.++++  +||||+++  .|+++||||+.|||+++.++... ...|.++.|
T Consensus       465 ~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~~~-~~~ng~t~~  524 (527)
T 3pc3_A          465 NESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGKQK-PKANGTTNG  524 (527)
T ss_dssp             ETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCCCC----------
T ss_pred             CCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcccc-cccCCCCCC
Confidence            999999999999977665  79999820  17999999999999999987652 334444433

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.44  E-value=3.5e-14  Score=153.63  Aligned_cols=172  Identities=12%  Similarity=0.129  Sum_probs=102.1

Q ss_pred             CCCCcccccCcC--CCeEEEcCCCcHHHHHHhcc-c-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhcc
Q 013939          209 PLSSISSLGVIN--PNYSSIEASVPAIEATLKAP-G-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLS  284 (433)
Q Consensus       209 ~~~tV~~L~im~--~~vitv~~~~~v~ea~~~M~-~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~  284 (433)
                      ...++++  +|+  ++++++++++++.|+.+.|. + +++++||||+  +|  +++|+||.+||++.........-..+.
T Consensus       451 ~~~~V~d--iM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~--~~--~lvGiVt~~DL~~~l~~~~~~~~~~~~  524 (632)
T 3org_A          451 PEMTARE--IMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA--NG--YLLGAISRKEIVDRLQHVLEDVPEPIA  524 (632)
T ss_dssp             TTSBHHH--HCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT--TC--BBCCEESHHHHTTTTTTC---------
T ss_pred             ccCcHHH--HhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEec--CC--eEEEEEEHHHHHHHHHHHhhhcccccc
Confidence            3456665  699  89999999999999999999 8 8999999998  78  999999999999764211000000000


Q ss_pred             chhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccC-CCCCCCCcccccCCCCCCCCCccccCCCCCCe
Q 013939          285 AGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRS-IGFNPSSPCLAASRSPSFGTGRSMYRGRSTPL  363 (433)
Q Consensus       285 ~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  363 (433)
                      -.+.....+    ...+.+ .++....+.. ..     .......++ .-.++.        . .+.     +.|+++++
T Consensus       525 ~~~~~~~~~----~~~l~~-~~~~~~~~~~-~~-----~~~~~~e~~~~~~~~~--------~-~v~-----~iMt~~pi  579 (632)
T 3org_A          525 GHRTLVLLD----AADLSE-NIEGLVDETP-SG-----EHSSKGKRTATVLEPT--------S-SLV-----VPCDVSPI  579 (632)
T ss_dssp             ------------------------------------------------------------------C-----CSCCCCCC
T ss_pred             cccceeccC----HHHHHh-hcccCCCCCc-cc-----chhhhcccceEeeccc--------c-ccc-----hhhcCCCc
Confidence            000000000    000000 0000000000 00     000000000 000000        0 011     45799999


Q ss_pred             EecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCC
Q 013939          364 TCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQP  414 (433)
Q Consensus       364 t~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~  414 (433)
                      ||++++++.+++++|.++++|++||+| +  |+++||||++||++++.++.
T Consensus       580 tV~~~~~l~ea~~~M~~~~i~~lpVve-~--G~lvGIVT~~Dll~~~~~~~  627 (632)
T 3org_A          580 VVTSYSLVRQLHFLFVMLMPSMIYVTE-R--GKLVGIVEREDVAYGYSNSL  627 (632)
T ss_dssp             EEETTCBHHHHHHHHHHTCCSEEEEEE-T--TEEEEEEEGGGTEECCCC--
T ss_pred             eecCCCcHHHHHHHHHhcCCCEEEEEE-C--CEEEEEEehhhHHHHHhhhH
Confidence            999999999999999999999999994 4  89999999999998876543

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.41  E-value=8e-13  Score=138.42  Aligned_cols=118  Identities=17%  Similarity=0.200  Sum_probs=100.1

Q ss_pred             CCCcccccCcCCCeEEEcCCCcHHHHHHhccc-C-----CCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhc
Q 013939          210 LSSISSLGVINPNYSSIEASVPAIEATLKAPG-D-----PSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANL  283 (433)
Q Consensus       210 ~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~-----isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l  283 (433)
                      ..++++  +|+++++++.+++++.+|++.|.+ .     ++.+||||+  ++  +++|+||.+|++...        .. 
T Consensus       154 ~~~v~~--iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~--~~--~lvGiVt~~Dll~~~--------~~-  218 (473)
T 2zy9_A          154 EDEAGG--LMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE--KG--RLKGVLSLRDLIVAD--------PR-  218 (473)
T ss_dssp             TTBSTT--TCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECT--TS--BEEEEEEHHHHHHSC--------TT-
T ss_pred             CCCHHH--hCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECC--CC--cEEEEEEHHHHhcCC--------CC-
Confidence            455665  799999999999999999999987 3     789999998  78  999999999997531        00 


Q ss_pred             cchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCe
Q 013939          284 SAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPL  363 (433)
Q Consensus       284 ~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  363 (433)
                                                   .                 .+                 +     ..|+++++
T Consensus       219 -----------------------------~-----------------~v-----------------~-----dim~~~~~  230 (473)
T 2zy9_A          219 -----------------------------T-----------------RV-----------------A-----EIMNPKVV  230 (473)
T ss_dssp             -----------------------------S-----------------BG-----------------G-----GTSBSSCC
T ss_pred             -----------------------------C-----------------cH-----------------H-----HHhCCCCe
Confidence                                         0                 00                 0     22577899


Q ss_pred             EecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          364 TCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       364 t~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      ++++++++.+++++|.+++++++||||++  |+++||||..||++.+..
T Consensus       231 ~v~~~~~l~ea~~~m~~~~~~~lpVVDe~--g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          231 YVRTDTDQEEVARLMADYDFTVLPVVDEE--GRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             CEESSSBHHHHHHHHHHHTCSEEEEECTT--SBEEEEEEHHHHHHHHHH
T ss_pred             EEeCCCcHHHHHHHHHhcCCcEEEEEcCC--CEEEEEEehHhhHHHHHH
Confidence            99999999999999999999999999998  999999999999998865

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.41  E-value=3.4e-13  Score=142.74  Aligned_cols=130  Identities=12%  Similarity=0.193  Sum_probs=105.7

Q ss_pred             ccchhHhhhhcCCCCeEEEcCC-ccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            5 FIYHVVGDLTVGKPELAEFYET-ETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         5 ~~~~~v~DL~~~k~~lVtv~~~-~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      |...+|+|+|.  +++++++++ +|+.+|+++|.+++++++||+|.+            +++++|+||..||++++....
T Consensus       381 l~~~~V~diM~--~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~------------~g~lvGiVt~~Dll~~l~~~~  446 (527)
T 3pc3_A          381 WWSLAIAELEL--PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQD------------DGSVLGVVGQETLITQIVSMN  446 (527)
T ss_dssp             TTTSBGGGGCC--CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTT------------TCCEEEEEEHHHHHHHHHHHC
T ss_pred             ccCCcHHHhCc--CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECC------------CCEEEEEEEHHHHHHHHHhcc
Confidence            44578999985  678999999 999999999999999999999922            379999999999999876431


Q ss_pred             CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939           84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS  162 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  162 (433)
                            ...+.+|+++|.++   +++++++++|.+|+++|. +++  +||++++..                        
T Consensus       447 ------~~~~~~V~~im~~~---~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~------------------------  491 (527)
T 3pc3_A          447 ------RQQSDPAIKALNKR---VIRLNESEILGKLARVLEVDPS--VLILGKNPA------------------------  491 (527)
T ss_dssp             ------CCTTSBGGGGEETT---CCEEETTSBHHHHHHHHTTCSE--EEEEEECSS------------------------
T ss_pred             ------CcCCCcHHHHhcCC---CeEECCCCcHHHHHHHHhhCCE--EEEEeCCcc------------------------
Confidence                  12357999999865   999999999999999997 343  577765310                        


Q ss_pred             cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHc
Q 013939          163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGC  201 (433)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~  201 (433)
                                        +.++++||||+.||++++.++
T Consensus       492 ------------------~~g~lvGIVT~~Dll~~l~~~  512 (527)
T 3pc3_A          492 ------------------GKVELKALATKLDVTTFIAAG  512 (527)
T ss_dssp             ------------------SCEEEEEEEEHHHHHHHHHTC
T ss_pred             ------------------cCCeEEEEEEHHHHHHHHHhc
Confidence                              113579999999999999764

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.39  E-value=1.1e-12  Score=128.42  Aligned_cols=120  Identities=14%  Similarity=0.199  Sum_probs=104.1

Q ss_pred             ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhc-----CCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHh
Q 013939            5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGES-----TECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFL   79 (433)
Q Consensus         5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~-----~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l   79 (433)
                      +...+|+++|.  ++++++++++|+.+|++.|.++     ++.++||+|..             ++++|+||..|++...
T Consensus       134 ~~~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~-------------~~lvGivt~~dll~~~  198 (286)
T 2oux_A          134 YEDETAGAIMT--TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-------------NHLVGVISLRDLIVND  198 (286)
T ss_dssp             SCTTBHHHHCB--SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-------------CBEEEEEEHHHHTTSC
T ss_pred             CChHHHHHhCC--CCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC-------------CeEEEEEEHHHHHcCC
Confidence            45678999986  6789999999999999999998     88889999963             7999999999997531


Q ss_pred             hcCCCcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhcccccccccc
Q 013939           80 AKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMD  158 (433)
Q Consensus        80 ~~~~~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~  158 (433)
                                  .+.+|+++|..+   ++++.+++++.+|++.|. ++++++||+++.+                     
T Consensus       199 ------------~~~~v~~im~~~---~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g---------------------  242 (286)
T 2oux_A          199 ------------DDTLIADILNER---VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDD---------------------  242 (286)
T ss_dssp             ------------TTSBHHHHSBSC---CCCEETTSBHHHHHHHHHHHTCSEEEEECTTC---------------------
T ss_pred             ------------CCCcHHHHcCCC---CeeecCCCCHHHHHHHHHHcCCcEEEEEcCCC---------------------
Confidence                        247899999865   899999999999999999 7999999986432                     


Q ss_pred             ccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          159 ASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                               +++|+||..||++++.+
T Consensus       243 -------------------------~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          243 -------------------------HLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             -------------------------BEEEEEEHHHHHHHHHH
T ss_pred             -------------------------eEEEEEEHHHHHHHHHH
Confidence                                     46899999999999865

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.39  E-value=1.5e-12  Score=137.72  Aligned_cols=119  Identities=13%  Similarity=0.115  Sum_probs=98.7

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV  296 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~  296 (433)
                      .|..+++++.+++++.+|+++|.+ +++++||+|++.++  +++|+||.+||+... .      ..              
T Consensus       118 ~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~--~lvGiVt~rDl~~~~-~------~~--------------  174 (511)
T 3usb_A          118 GVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDER--KLVGIITNRDMRFIQ-D------YS--------------  174 (511)
T ss_dssp             CSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTC--BEEEEEEHHHHTTCC-C------SS--------------
T ss_pred             ccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCC--EEEEEEEehHhhhhc-c------CC--------------
Confidence            577889999999999999999999 99999999952135  999999999997421 0      00              


Q ss_pred             CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCC-CCeEecCCCCHHHHH
Q 013939          297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRS-TPLTCKITSSLAAVM  375 (433)
Q Consensus       297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~it~~p~~sL~~v~  375 (433)
                                      .                 .+      .                +.|++ +++++++++++.+++
T Consensus       175 ----------------~-----------------~V------~----------------~vM~~~~~vtv~~~~~l~eal  199 (511)
T 3usb_A          175 ----------------I-----------------KI------S----------------DVMTKEQLITAPVGTTLSEAE  199 (511)
T ss_dssp             ----------------S-----------------BH------H----------------HHCCCCCCCCEETTCCHHHHH
T ss_pred             ----------------C-----------------cH------H----------------HhcccCCCEEECCCCCHHHHH
Confidence                            0                 00      0                22455 899999999999999


Q ss_pred             HHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCCC
Q 013939          376 AQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAA  416 (433)
Q Consensus       376 ~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~~  416 (433)
                      ++|.+++++++||||++  |+++|+||+.||++.+..+.+.
T Consensus       200 ~~m~~~~i~~lpVVDe~--g~l~GiIT~~Dil~~~~~p~a~  238 (511)
T 3usb_A          200 KILQKYKIEKLPLVDNN--GVLQGLITIKDIEKVIEFPNSA  238 (511)
T ss_dssp             HHHHHHTCSEEEEECTT--SBEEEEEEHHHHHHHHHCTTCC
T ss_pred             HHHHHcCCCEEEEEeCC--CCEeeeccHHHHHHhhhcccch
Confidence            99999999999999998  9999999999999999875543

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.36  E-value=2e-12  Score=125.51  Aligned_cols=121  Identities=22%  Similarity=0.253  Sum_probs=103.2

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhc-----CCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHH
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGES-----TECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAF   78 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~-----~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~   78 (433)
                      .|...+++++|.  ++++++++++|+.+|++.|.++     ++.++||+|..             ++++|+||..|++..
T Consensus       131 ~~~~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~-------------~~lvGivt~~dll~~  195 (278)
T 2yvy_A          131 RYEEDEAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-------------GRLKGVLSLRDLIVA  195 (278)
T ss_dssp             HSCTTBGGGTCB--SCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT-------------CBEEEEEEHHHHHHS
T ss_pred             CCCcchHHhhcC--CCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC-------------CCEEEEEEHHHHhcC
Confidence            355678899985  6899999999999999999998     89999999963             799999999999863


Q ss_pred             hhcCCCcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccc
Q 013939           79 LAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNM  157 (433)
Q Consensus        79 l~~~~~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~  157 (433)
                        .          .+.+|+++|..+   ++++.+++++.+|++.|. ++++++||+++.+                    
T Consensus       196 --~----------~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g--------------------  240 (278)
T 2yvy_A          196 --D----------PRTRVAEIMNPK---VVYVRTDTDQEEVARLMADYDFTVLPVVDEEG--------------------  240 (278)
T ss_dssp             --C----------TTCBSTTTSBSS---CCCEETTSBHHHHHHHHHHHTCSEEEEECTTS--------------------
T ss_pred             --C----------CCCcHHHHhCCC---CeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCC--------------------
Confidence              1          247899999865   899999999999999999 7999999986432                    


Q ss_pred             cccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          158 DASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                                +++||||..||++.+.+
T Consensus       241 --------------------------~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          241 --------------------------RLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             --------------------------BEEEEEEHHHHHHHC--
T ss_pred             --------------------------eEEEEEEHHHHHHHHHH
Confidence                                      46899999999998854

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.33  E-value=1.5e-13  Score=144.93  Aligned_cols=116  Identities=9%  Similarity=0.013  Sum_probs=1.5

Q ss_pred             cCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC---CcceEEeecchhhhhhcchhHHHHHHhhccchhhhhcccc
Q 013939          219 INPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE---DQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVED  294 (433)
Q Consensus       219 m~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~---g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~  294 (433)
                      |+++++++.+++++.+|+++|.+ +++++||+|+  +   +  +++|+||.+||+... .     ....           
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~--~~~~g--~lvGiVt~~Dl~~~~-~-----~~~~-----------  161 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDD--GTPHG--VLLGLVTQRDYPIDL-T-----QTET-----------  161 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEEC--CCcCC--eEEEEEEHHHHHhhh-c-----cccC-----------
Confidence            88899999999999999999999 9999999997  6   7  999999999997520 0     0000           


Q ss_pred             CCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCC--CeEecCCCCHH
Q 013939          295 NVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRST--PLTCKITSSLA  372 (433)
Q Consensus       295 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~it~~p~~sL~  372 (433)
                                                          .+  .                    ..|+.+  +++|++++++.
T Consensus       162 ------------------------------------~V--~--------------------diM~~~~~~~tv~~~~sl~  183 (503)
T 1me8_A          162 ------------------------------------KV--S--------------------DMMTPFSKLVTAHQDTKLS  183 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------------------------------------cH--H--------------------HHhCCCCCCEEEcCCCcHH
Confidence                                                00  0                    124555  99999999999


Q ss_pred             HHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          373 AVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       373 ~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      +++++|.+++++++||||++  |+++||||+.||++.+.....
T Consensus       184 ea~~~m~~~~i~~lpVVDe~--g~lvGiIT~~Dil~~~~~~~~  224 (503)
T 1me8_A          184 EANKIIWEKKLNALPIIDDD--QHLRYIVFRKDYDRSQVCHNE  224 (503)
T ss_dssp             ----------------------------------------CCC
T ss_pred             HHHHHHHHcCCCEEEEEcCC--CeEEEEEEecHHHHhhhcccc
Confidence            99999999999999999998  999999999999999986554

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.33  E-value=1.6e-13  Score=144.01  Aligned_cols=121  Identities=12%  Similarity=0.115  Sum_probs=4.9

Q ss_pred             cCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCC-CCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939          219 INPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTS-EDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV  296 (433)
Q Consensus       219 m~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~-~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~  296 (433)
                      |..+++|+.|+.++.||+++|.+ +++++||+|++. ++  ||+||||.+|++..+.        .              
T Consensus       144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~--kLvGIvT~RD~rf~d~--------~--------------  199 (556)
T 4af0_A          144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDS--KLLGIVTGRDVQFQDA--------E--------------  199 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCC--EEEEEEeccccccccc--------c--------------
Confidence            55679999999999999999999 999999999621 35  9999999999875320        0              


Q ss_pred             CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939          297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA  376 (433)
Q Consensus       297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~  376 (433)
                                      .                 .+  +                    +.|+.+++|+..+.++.+|.+
T Consensus       200 ----------------~-----------------~V--~--------------------evMT~~lvt~~~~~~leeA~~  224 (556)
T 4af0_A          200 ----------------T-----------------PI--K--------------------SVMTTEVVTGSSPITLEKANS  224 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------e-----------------Eh--h--------------------hhcccceEEecCCCCHHHHHH
Confidence                            0                 00  0                    236789999999999999999


Q ss_pred             HHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCCCcCCC
Q 013939          377 QMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTPA  420 (433)
Q Consensus       377 ~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~~~~~~  420 (433)
                      +|.+|++.+|||||++  ++|+|+||+.||++.-..+.+....+
T Consensus       225 iL~~~kieklpVVd~~--g~LvGlIT~kDi~k~~~~p~A~k~d~  266 (556)
T 4af0_A          225 LLRETKKGKLPIVDSN--GHLVSLVARSDLLKNQNYPYASKVPE  266 (556)
T ss_dssp             -----------------------------------CTTCCBCTT
T ss_pred             HHHHccccceeEEccC--CcEEEEEEechhhhhhhCCcchhcch
Confidence            9999999999999998  99999999999999887766655443

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.32  E-value=4.6e-12  Score=132.77  Aligned_cols=113  Identities=16%  Similarity=0.148  Sum_probs=97.5

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEec--CCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhcccc
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLE--PTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVED  294 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd--~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~  294 (433)
                      +|+++++++.+++++.+|+++|.+ +++++||+|  +  ++  +++|+||.+||+... .                    
T Consensus        95 im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~--~~--~lvGivt~~Dl~~~~-~--------------------  149 (491)
T 1zfj_A           95 GVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLA--NR--KLVGIITNRDMRFIS-D--------------------  149 (491)
T ss_dssp             TTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT--TC--BEEEEEEHHHHHHCS-C--------------------
T ss_pred             cCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCC--CC--EEEEEEEHHHHhhhc-c--------------------
Confidence            788899999999999999999999 999999999  6  77  999999999997431 0                    


Q ss_pred             CCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCC-CCeEecCCCCHHH
Q 013939          295 NVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRS-TPLTCKITSSLAA  373 (433)
Q Consensus       295 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~it~~p~~sL~~  373 (433)
                                        ..               ..+  .                    ..|++ +++++++++++.+
T Consensus       150 ------------------~~---------------~~v--~--------------------~im~~~~~~~v~~~~~l~~  174 (491)
T 1zfj_A          150 ------------------YN---------------API--S--------------------EHMTSEHLVTAAVGTDLET  174 (491)
T ss_dssp             ------------------SS---------------SBT--T--------------------TSCCCSCCCCEETTCCHHH
T ss_pred             ------------------CC---------------CcH--H--------------------HHcCCCCCEEECCCCCHHH
Confidence                              00               000  0                    22566 8999999999999


Q ss_pred             HHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          374 VMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       374 v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      ++++|.+++++++||||++  |+++|+||+.||++.+..
T Consensus       175 a~~~m~~~~~~~lpVVd~~--g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          175 AERILHEHRIEKLPLVDNS--GRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             HHHHHHHTTCSEEEEECTT--SBEEEEEEHHHHHHHHHC
T ss_pred             HHHHHHHcCCCEEEEEcCC--CcEEEEEEHHHHHHHHhc
Confidence            9999999999999999998  999999999999999985

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.31  E-value=4.8e-13  Score=141.00  Aligned_cols=116  Identities=16%  Similarity=0.122  Sum_probs=84.6

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV  296 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~  296 (433)
                      +|..+++++.+++++.+|+++|.+ +++++||+|+  ++  +++|+||.+||+... .                      
T Consensus        94 ~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~--~~--~lvGiVt~rDL~~~~-~----------------------  146 (496)
T 4fxs_A           94 GVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTE--NN--ELVGIITGRDVRFVT-D----------------------  146 (496)
T ss_dssp             --CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS--SS--BEEEEEEHHHHTTCC-C----------------------
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEcc--CC--EEEEEEEHHHHhhcc-c----------------------
Confidence            578889999999999999999999 9999999998  78  999999999997321 0                      


Q ss_pred             CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCC-C-CCeEecCCCCHHHH
Q 013939          297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGR-S-TPLTCKITSSLAAV  374 (433)
Q Consensus       297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~it~~p~~sL~~v  374 (433)
                                      ..               ..+  .                    +.|+ . +++++++++++.++
T Consensus       147 ----------------~~---------------~~v--~--------------------diM~p~~~~vtv~~~~~l~ea  173 (496)
T 4fxs_A          147 ----------------LT---------------KSV--A--------------------AVMTPKERLATVKEGATGAEV  173 (496)
T ss_dssp             ----------------TT---------------SBG--G--------------------GTSEEGGGCCEEECC----CG
T ss_pred             ----------------CC---------------CcH--H--------------------HHhcCCCCCEEECCCCCHHHH
Confidence                            00               000  0                    1245 3 69999999999999


Q ss_pred             HHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          375 MAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       375 ~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      +++|.+|+++++||||++  |+++|+||+.||++....+.+
T Consensus       174 ~~~m~~~~i~~lpVVDe~--G~l~GiIT~~DIl~~~~~p~a  212 (496)
T 4fxs_A          174 QEKMHKARVEKILVVNDE--FQLKGMITAKDFHKAESKPNA  212 (496)
T ss_dssp             GGTCC---CCCEEEECTT--SBCCEEECCC-----CCCTTC
T ss_pred             HHHHHHcCCCEEEEEcCC--CCEEEeehHhHHHHhhcccch
Confidence            999999999999999998  999999999999998765544

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.26  E-value=4.6e-13  Score=140.61  Aligned_cols=114  Identities=14%  Similarity=0.168  Sum_probs=6.5

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV  296 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~  296 (433)
                      +|.++++++.+++++.+|+++|.+ +++.+||||+  ++  +++|+||.+||+... .      ..              
T Consensus       100 iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~--~~--~lvGivt~~Dl~~~~-~------~~--------------  154 (494)
T 1vrd_A          100 GIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDE--EG--RLVGLLTNRDVRFEK-N------LS--------------  154 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcC--CC--EEEEEEEHHHHHhhc-C------CC--------------
Confidence            688899999999999999999999 9999999997  78  999999999997521 0      00              


Q ss_pred             CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCC--CCeEecCCCCHHHH
Q 013939          297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRS--TPLTCKITSSLAAV  374 (433)
Q Consensus       297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~it~~p~~sL~~v  374 (433)
                                      .                 .+  .                    ..|++  +++++++++++.++
T Consensus       155 ----------------~-----------------~v--~--------------------~im~~~~~~~~v~~~~~l~ea  179 (494)
T 1vrd_A          155 ----------------K-----------------KI--K--------------------DLMTPREKLIVAPPDISLEKA  179 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------C-----------------cH--H--------------------HHhCCCCCCeEECCCCCHHHH
Confidence                            0                 00  0                    12455  89999999999999


Q ss_pred             HHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          375 MAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       375 ~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      +.+|.+++++++||||++  |+++||||+.||++.+..+
T Consensus       180 ~~~m~~~~~~~lpVVd~~--g~lvGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          180 KEILHQHRIEKLPLVSKD--NKLVGLITIKDIMSVIEHP  216 (494)
T ss_dssp             -------------------------------CHHHHTCT
T ss_pred             HHHHHHcCCcEEEEEcCC--CeEEEEEEHHHHHhhhccc
Confidence            999999999999999998  9999999999999998754

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.26  E-value=7.4e-13  Score=139.31  Aligned_cols=116  Identities=21%  Similarity=0.228  Sum_probs=2.8

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV  296 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~  296 (433)
                      +|..+++++.+++++.+|+++|.+ +++++||+|   ++  +++|+||.+||+... .      ..              
T Consensus        93 ~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd---~g--~lvGIVt~rDl~~~~-~------~~--------------  146 (490)
T 4avf_A           93 AIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE---QG--ELVGIVTGRDLRVKP-N------AG--------------  146 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE---CC--EEEEEEEhHHhhhcc-c------cC--------------
Confidence            577889999999999999999999 999999999   47  999999999996321 0      00              


Q ss_pred             CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCC-C-CCeEecCCCCHHHH
Q 013939          297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGR-S-TPLTCKITSSLAAV  374 (433)
Q Consensus       297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~it~~p~~sL~~v  374 (433)
                                      .                 .+  .                    +.|+ . +++++++++++.++
T Consensus       147 ----------------~-----------------~V--~--------------------~vMtp~~~~vtv~~~~~l~ea  171 (490)
T 4avf_A          147 ----------------D-----------------TV--A--------------------AIMTPKDKLVTAREGTPLEEM  171 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------C-----------------cH--H--------------------HHhccCCCCEEECCCCcHHHH
Confidence                            0                 00  0                    2245 3 79999999999999


Q ss_pred             HHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCCC
Q 013939          375 MAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAA  416 (433)
Q Consensus       375 ~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~~  416 (433)
                      +++|.+++++++||||++  |+++|+||+.||+++...+.+.
T Consensus       172 ~~~m~~~~i~~lpVVDe~--g~lvGiIT~~Dil~~~~~p~a~  211 (490)
T 4avf_A          172 KAKLYENRIEKMLVVDEN--FYLRGLVTFRDIEKAKTYPLAS  211 (490)
T ss_dssp             -------------------------------------CTTCC
T ss_pred             HHHHHHcCCCEEEEEcCC--CcEEEEEehHHhhhhccCcchh
Confidence            999999999999999998  9999999999999998766554

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.23  E-value=1.2e-11  Score=96.53  Aligned_cols=66  Identities=14%  Similarity=0.240  Sum_probs=55.9

Q ss_pred             CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939           19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ   98 (433)
Q Consensus        19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~   98 (433)
                      +++++++++|+.+|+++|.+++++++||+|.              ++++||||++||++.+....     ....+.||++
T Consensus         1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~--------------~~lvGIvT~~Di~~~~~~~~-----~~~~~~~V~~   61 (70)
T 3ghd_A            1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG--------------DEILGVVTERDILDKVVAKG-----KNPKEVKVEE   61 (70)
T ss_dssp             CEEEECTTCBHHHHHHHHHHTTCSEEEEEET--------------TEEEEEEEHHHHHHHTTTTT-----CCGGGCBGGG
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC--------------CEEEEEEEHHHHHHHHHhcC-----CCcccCCHHH
Confidence            4799999999999999999999999999983              79999999999998765421     1223589999


Q ss_pred             ccccC
Q 013939           99 VIVPN  103 (433)
Q Consensus        99 Im~~~  103 (433)
                      +|+++
T Consensus        62 iMt~~   66 (70)
T 3ghd_A           62 IMTKN   66 (70)
T ss_dssp             TCEEC
T ss_pred             hcCCC
Confidence            99975

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.22  E-value=3.5e-11  Score=125.99  Aligned_cols=121  Identities=22%  Similarity=0.253  Sum_probs=104.0

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhc-----CCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHH
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGES-----TECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAF   78 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~-----~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~   78 (433)
                      .|...+++++|.  ++++++++++|+++|++.|.++     ++.++||+|.+             ++++|+|+.+|++..
T Consensus       151 ~~~~~~v~~iM~--~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~-------------~~lvGiVt~~Dll~~  215 (473)
T 2zy9_A          151 RYEEDEAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-------------GRLKGVLSLRDLIVA  215 (473)
T ss_dssp             TSCTTBSTTTCB--SCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT-------------SBEEEEEEHHHHHHS
T ss_pred             cCCCCCHHHhCC--CCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC-------------CcEEEEEEHHHHhcC
Confidence            355667888885  6899999999999999999997     58999999963             799999999999863


Q ss_pred             hhcCCCcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccc
Q 013939           79 LAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNM  157 (433)
Q Consensus        79 l~~~~~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~  157 (433)
                        .          .+.+|+++|.++   ++++++++++.+|++.|. ++++++||+++.+                    
T Consensus       216 --~----------~~~~v~dim~~~---~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g--------------------  260 (473)
T 2zy9_A          216 --D----------PRTRVAEIMNPK---VVYVRTDTDQEEVARLMADYDFTVLPVVDEEG--------------------  260 (473)
T ss_dssp             --C----------TTSBGGGTSBSS---CCCEESSSBHHHHHHHHHHHTCSEEEEECTTS--------------------
T ss_pred             --C----------CCCcHHHHhCCC---CeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCC--------------------
Confidence              1          247999999865   999999999999999999 7999999987532                    


Q ss_pred             cccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          158 DASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                                +.+|+||..|+++.+.+
T Consensus       261 --------------------------~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          261 --------------------------RLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             --------------------------BEEEEEEHHHHHHHHHH
T ss_pred             --------------------------EEEEEEehHhhHHHHHH
Confidence                                      46899999999999864

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.21  E-value=4.4e-12  Score=137.20  Aligned_cols=113  Identities=7%  Similarity=-0.023  Sum_probs=88.0

Q ss_pred             cchhHhhhhcCCCCeEEEcCCccHHHHHHHHH-hcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC-
Q 013939            6 IYHVVGDLTVGKPELAEFYETETVEAAIKAIG-ESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD-   83 (433)
Q Consensus         6 ~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~-e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~-   83 (433)
                      ...+|+|+|.-.++++++++++|++|+++.|. +++++++||+|++             ++++|+|+..|+++.+.+.. 
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~-------------~~lvGiVt~~DL~~~l~~~~~  517 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDAN-------------GYLLGAISRKEIVDRLQHVLE  517 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTT-------------CBBCCEESHHHHTTTTTTC--
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecC-------------CeEEEEEEHHHHHHHHHHHhh
Confidence            45679999975578999999999999999999 8999999999963             79999999999998765320 


Q ss_pred             Ccch-------------------HHhhc---------------------CCcchhccccCCCccEEeCCCCcHHHHHHHH
Q 013939           84 CLED-------------------QDKAM---------------------KTPVSQVIVPNNSLLKQVDPGTRLIDALEMM  123 (433)
Q Consensus        84 ~l~~-------------------~~~~l---------------------~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m  123 (433)
                      ....                   .....                     ..+|+++|+++   ++++++++++.||+++|
T Consensus       518 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~---pitV~~~~~l~ea~~~M  594 (632)
T 3org_A          518 DVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVS---PIVVTSYSLVRQLHFLF  594 (632)
T ss_dssp             -----------------------------------------------------CCSCCCC---CCEEETTCBHHHHHHHH
T ss_pred             hcccccccccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCC---CceecCCCcHHHHHHHH
Confidence            0000                   00000                     11488899976   88999999999999999


Q ss_pred             H-cCCCeEEeee
Q 013939          124 K-QGVRRLLVPK  134 (433)
Q Consensus       124 ~-~gi~rl~V~~  134 (433)
                      . +++|++||++
T Consensus       595 ~~~~i~~lpVve  606 (632)
T 3org_A          595 VMLMPSMIYVTE  606 (632)
T ss_dssp             HHTCCSEEEEEE
T ss_pred             HhcCCCEEEEEE
Confidence            9 7899999983

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.19  E-value=1.2e-10  Score=123.16  Aligned_cols=161  Identities=14%  Similarity=0.124  Sum_probs=117.9

Q ss_pred             hHhhhhcC----CCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC
Q 013939            9 VVGDLTVG----KPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC   84 (433)
Q Consensus         9 ~v~DL~~~----k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~   84 (433)
                      .|.+++..    .++++++++++|+.+|+++|.+++++++||+|...           +++++|+||.+|+..   .   
T Consensus       108 ~V~~V~~~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~-----------~~~lvGiVt~rDl~~---~---  170 (511)
T 3usb_A          108 QVDKVKRSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLD-----------ERKLVGIITNRDMRF---I---  170 (511)
T ss_dssp             HHHHHHTSSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTT-----------TCBEEEEEEHHHHTT---C---
T ss_pred             HHHHhhccccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCC-----------CCEEEEEEEehHhhh---h---
Confidence            46677654    36789999999999999999999999999999621           279999999999953   1   


Q ss_pred             cchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcc
Q 013939           85 LEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSS  163 (433)
Q Consensus        85 l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~  163 (433)
                           ...+.+|+++|.+  .+++++++++++.+|+++|. ++++++||+++++                          
T Consensus       171 -----~~~~~~V~~vM~~--~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g--------------------------  217 (511)
T 3usb_A          171 -----QDYSIKISDVMTK--EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNG--------------------------  217 (511)
T ss_dssp             -----CCSSSBHHHHCCC--CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTS--------------------------
T ss_pred             -----ccCCCcHHHhccc--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCC--------------------------
Confidence                 1135789999996  24999999999999999999 8999999987543                          


Q ss_pred             ccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCCC--eEEEcCCCcHHHHHHhccc
Q 013939          164 SNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPN--YSSIEASVPAIEATLKAPG  241 (433)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~--vitv~~~~~v~ea~~~M~~  241 (433)
                                          .++|+||..|+++.+.. .....          +.+.+.  -..+.......+.++.+.+
T Consensus       218 --------------------~l~GiIT~~Dil~~~~~-p~a~~----------D~~~rl~V~aavg~~~d~~era~aLve  266 (511)
T 3usb_A          218 --------------------VLQGLITIKDIEKVIEF-PNSAK----------DKQGRLLVGAAVGVTADAMTRIDALVK  266 (511)
T ss_dssp             --------------------BEEEEEEHHHHHHHHHC-TTCCB----------CTTSCBCCEEEECSSTTHHHHHHHHHH
T ss_pred             --------------------CEeeeccHHHHHHhhhc-ccchh----------hhccceeeeeeeeeccchHHHHHHHHh
Confidence                                46899999999998853 11110          012221  2344444455666666666


Q ss_pred             -CCCeeEEec
Q 013939          242 -DPSAIAVLE  250 (433)
Q Consensus       242 -~isavpVVd  250 (433)
                       +...+.|-.
T Consensus       267 aGvd~I~Id~  276 (511)
T 3usb_A          267 ASVDAIVLDT  276 (511)
T ss_dssp             TTCSEEEEEC
T ss_pred             hccceEEecc
Confidence             555554443

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.15  E-value=1.7e-12  Score=137.14  Aligned_cols=135  Identities=10%  Similarity=0.020  Sum_probs=79.7

Q ss_pred             eHHHHHHHHHHccCCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCC-CCcceEEeecchhh
Q 013939          190 SREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTS-EDQYKIIGEISASK  267 (433)
Q Consensus       190 Tq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~-~g~~klvGiIS~~D  267 (433)
                      |.+++.+++..         .+++.+  +|.++++++.+++++.+|+++|.+ +++++||||++. ++  +++|+||.+|
T Consensus        96 t~e~~~~~v~~---------v~~~~~--im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~--~lvGiVt~~D  162 (514)
T 1jcn_A           96 TPEFQANEVRK---------VKNFEQ--GFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGS--KLVGIVTSRD  162 (514)
T ss_dssp             CHHHHHHHHHH---------HHTCCT--TSCSSCCCCCC-----------------CEESCC----------CCEECTTT
T ss_pred             CHHHHHHHHHh---------hhhhhh--ccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCC--EEEEEEEHHH
Confidence            77888877642         123333  688889999999999999999999 999999999610 16  9999999999


Q ss_pred             hhhcchhHHHHHHhhccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCC
Q 013939          268 LWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSP  347 (433)
Q Consensus       268 L~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (433)
                      ++... .    ....                              .                 .+  .            
T Consensus       163 l~~~~-~----~~~~------------------------------~-----------------~v--~------------  176 (514)
T 1jcn_A          163 IDFLA-E----KDHT------------------------------T-----------------LL--S------------  176 (514)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             HHhhh-h----ccCC------------------------------C-----------------CH--H------------
Confidence            97531 0    0000                              0                 00  0            


Q ss_pred             CCCCCccccCCCC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          348 SFGTGRSMYRGRS--TPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       348 ~~~~~~~~~~~~~--~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                              ..|+.  ++++++++++|.+++.+|.+++++++||||++  |+++|+||+.||++.+...
T Consensus       177 --------~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~--g~lvGiIt~~Dll~~~~~~  234 (514)
T 1jcn_A          177 --------EVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDC--DELVAIIARTDLKKNRDYP  234 (514)
T ss_dssp             ------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSS--SCCC----CCCCSSCCCCT
T ss_pred             --------HHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCC--CeEEEEEEHHHHHHHhhCc
Confidence                    22466  89999999999999999999999999999988  9999999999999987654

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.12  E-value=1.4e-11  Score=129.99  Aligned_cols=155  Identities=14%  Similarity=0.078  Sum_probs=18.1

Q ss_pred             CCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcc
Q 013939           17 KPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPV   96 (433)
Q Consensus        17 k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV   96 (433)
                      .++++++++++|+.+|+++|.+++++++||+|.+..          .++++||||.+||+..  .        ...+.+|
T Consensus       104 ~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~----------~g~lvGiVt~~Dl~~~--~--------~~~~~~V  163 (503)
T 1me8_A          104 VVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTP----------HGVLLGLVTQRDYPID--L--------TQTETKV  163 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCc----------CCeEEEEEEHHHHHhh--h--------ccccCcH
Confidence            368899999999999999999999999999985200          1699999999999864  1        1235789


Q ss_pred             hhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCCCC
Q 013939           97 SQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPS  175 (433)
Q Consensus        97 ~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~  175 (433)
                      +++|.+. +.++++++++++.+|+++|. ++++++||+++++                                      
T Consensus       164 ~diM~~~-~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g--------------------------------------  204 (503)
T 1me8_A          164 SDMMTPF-SKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQ--------------------------------------  204 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhCCC-CCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCC--------------------------------------
Confidence            9999842 34899999999999999999 7899999987532                                      


Q ss_pred             CCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEE
Q 013939          176 SSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAV  248 (433)
Q Consensus       176 ~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpV  248 (433)
                              +++||||..||++.+......     ....+.  ++.  -..+.. ....+.++.|.+ ++..+.|
T Consensus       205 --------~lvGiIT~~Dil~~~~~~~~~-----~d~~~~--l~v--~a~v~~-~~~~e~~~~l~e~gv~~l~V  260 (503)
T 1me8_A          205 --------HLRYIVFRKDYDRSQVCHNEL-----VDSQKR--YLV--GAGINT-RDFRERVPALVEAGADVLCI  260 (503)
T ss_dssp             -------------------------CCCC-----BCTTSC--BCC--EEEECS-SSHHHHHHHHHHHTCSEEEE
T ss_pred             --------eEEEEEEecHHHHhhhcccch-----hccccc--ccc--ccccCc-hhHHHHHHHHHhhhccceEE
Confidence                    458999999999987532111     001111  111  124445 677788888888 7765544

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.11  E-value=6.8e-10  Score=116.24  Aligned_cols=118  Identities=14%  Similarity=0.209  Sum_probs=98.9

Q ss_pred             HhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHH
Q 013939           10 VGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQD   89 (433)
Q Consensus        10 v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~   89 (433)
                      +.|+|.  ++++++++++|+.+|++.|.+++++++||+|.+.           +++++|+|+..|++..  .        
T Consensus        92 ~~~im~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-----------~~~lvGivt~~Dl~~~--~--------  148 (491)
T 1zfj_A           92 SENGVI--IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLA-----------NRKLVGIITNRDMRFI--S--------  148 (491)
T ss_dssp             HTTTTS--SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT-----------TCBEEEEEEHHHHHHC--S--------
T ss_pred             HHhcCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCC-----------CCEEEEEEEHHHHhhh--c--------
Confidence            456554  6889999999999999999999999999998210           3799999999999853  1        


Q ss_pred             hhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccc
Q 013939           90 KAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLI  168 (433)
Q Consensus        90 ~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~  168 (433)
                       ..+.+|+++|..  .+++++++++++.++++.|. ++++++||+++.+                               
T Consensus       149 -~~~~~v~~im~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g-------------------------------  194 (491)
T 1zfj_A          149 -DYNAPISEHMTS--EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG-------------------------------  194 (491)
T ss_dssp             -CSSSBTTTSCCC--SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTS-------------------------------
T ss_pred             -cCCCcHHHHcCC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-------------------------------
Confidence             125789999985  13899999999999999999 7899999986532                               


Q ss_pred             cccCCCCCCCcCCCCCeEEEeeHHHHHHHHH
Q 013939          169 ANANRPSSSSTTSVRDKFCCLSREDVIRFLI  199 (433)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~  199 (433)
                                     +++|+||..||++.+.
T Consensus       195 ---------------~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          195 ---------------RLSGLITIKDIEKVIE  210 (491)
T ss_dssp             ---------------BEEEEEEHHHHHHHHH
T ss_pred             ---------------cEEEEEEHHHHHHHHh
Confidence                           4689999999999986

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.00  E-value=9.9e-11  Score=122.85  Aligned_cols=117  Identities=19%  Similarity=0.273  Sum_probs=5.4

Q ss_pred             HhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHH
Q 013939           10 VGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQD   89 (433)
Q Consensus        10 v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~   89 (433)
                      +.|+|.  ++++++++++|+.+|+++|.+++++.+||+|.+             ++++|+||..|+...  .        
T Consensus        97 ~~~iM~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-------------~~lvGivt~~Dl~~~--~--------  151 (494)
T 1vrd_A           97 TENGII--YDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEE-------------GRLVGLLTNRDVRFE--K--------  151 (494)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             HhhcCc--cCCeEECCCCCHHHHHHHHHHcCceEEEEEcCC-------------CEEEEEEEHHHHHhh--c--------
Confidence            345553  578999999999999999999999999999963             799999999999752  1        


Q ss_pred             hhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccc
Q 013939           90 KAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLI  168 (433)
Q Consensus        90 ~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~  168 (433)
                       ..+.+|+++|... .+++++++++++.+|+++|. ++++++||+++++                               
T Consensus       152 -~~~~~v~~im~~~-~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g-------------------------------  198 (494)
T 1vrd_A          152 -NLSKKIKDLMTPR-EKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDN-------------------------------  198 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -CCCCcHHHHhCCC-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCC-------------------------------
Confidence             1357899999851 13899999999999999999 7899999986532                               


Q ss_pred             cccCCCCCCCcCCCCCeEEEeeHHHHHHHHH
Q 013939          169 ANANRPSSSSTTSVRDKFCCLSREDVIRFLI  199 (433)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~  199 (433)
                                     +++|+||..|+++.+.
T Consensus       199 ---------------~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          199 ---------------KLVGLITIKDIMSVIE  214 (494)
T ss_dssp             -------------------------CHHHHT
T ss_pred             ---------------eEEEEEEHHHHHhhhc
Confidence                           4589999999999874

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.99  E-value=4.2e-11  Score=125.65  Aligned_cols=110  Identities=15%  Similarity=0.189  Sum_probs=1.0

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV  296 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~  296 (433)
                      .|..+++++.+++++.+++++|.+ +++.+||+|+   +  +++|+||.+||+. .        ...+            
T Consensus        98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~---~--~lvGivt~~Dl~~-~--------~~~~------------  151 (486)
T 2cu0_A           98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED---E--KVVGIITKKDIAA-R--------EGKL------------  151 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC---C--EEEEEEEHHHhcc-C--------CCCC------------
Confidence            577889999999999999999999 8999999994   6  9999999999864 1        0000            


Q ss_pred             CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939          297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA  376 (433)
Q Consensus       297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~  376 (433)
                                                         +      +                ..|+++++++++++++.++++
T Consensus       152 -----------------------------------v------~----------------~im~~~~~~v~~~~~l~eal~  174 (486)
T 2cu0_A          152 -----------------------------------V------K----------------ELMTKEVITVPESIEVEEALK  174 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------------------------------H------H----------------HHccCCCeEECCcCcHHHHHH
Confidence                                               0      0                124668999999999999999


Q ss_pred             HHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          377 QMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       377 ~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      +|.+++++++||||++  |+++|+||+.||++.+..
T Consensus       175 ~m~~~~~~~lpVVde~--g~lvGiiT~~Dil~~~~~  208 (486)
T 2cu0_A          175 IMIENRIDRLPVVDER--GKLVGLITMSDLVARKKY  208 (486)
T ss_dssp             ----------------------------------CC
T ss_pred             HHHHcCCCEEEEEecC--CeEEEEEEHHHHHHhhhc
Confidence            9999999999999987  999999999999999753

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.96  E-value=6.4e-11  Score=124.33  Aligned_cols=94  Identities=17%  Similarity=0.291  Sum_probs=0.0

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      .+++++.|+.||.||+++|.+++|+.+||++....          +++++||||.+|+- |  .         ..+++|+
T Consensus       146 ~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~----------~~kLvGIvT~RD~r-f--~---------d~~~~V~  203 (556)
T 4af0_A          146 TDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEP----------DSKLLGIVTGRDVQ-F--Q---------DAETPIK  203 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCeEcCCCCCHHHHHHHHHHhCCCccccccccCc----------CCEEEEEEeccccc-c--c---------ccceEhh
Confidence            46799999999999999999999999999986421          47999999999973 3  1         1248999


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV  136 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~  136 (433)
                      ++|+.+   ++++.++.++.+|.++|. +++.++||++++
T Consensus       204 evMT~~---lvt~~~~~~leeA~~iL~~~kieklpVVd~~  240 (556)
T 4af0_A          204 SVMTTE---VVTGSSPITLEKANSLLRETKKGKLPIVDSN  240 (556)
T ss_dssp             ----------------------------------------
T ss_pred             hhcccc---eEEecCCCCHHHHHHHHHHccccceeEEccC
Confidence            999965   999999999999999999 789999998764

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.96  E-value=1.5e-09  Score=84.60  Aligned_cols=51  Identities=24%  Similarity=0.284  Sum_probs=46.7

Q ss_pred             CeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          362 PLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       362 ~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      ++||+|++|+.+|+.+|.+++++++||+|+   |+|+||||.+||++.+..+..
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~---~~lvGIvT~~Di~~~~~~~~~   52 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG---DEILGVVTERDILDKVVAKGK   52 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET---TEEEEEEEHHHHHHHTTTTTC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC---CEEEEEEEHHHHHHHHHhcCC
Confidence            689999999999999999999999999986   799999999999988765543

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.92  E-value=9.7e-11  Score=123.19  Aligned_cols=99  Identities=17%  Similarity=0.232  Sum_probs=1.2

Q ss_pred             HhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHH
Q 013939           10 VGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQD   89 (433)
Q Consensus        10 v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~   89 (433)
                      +.++|.  ++++++++++|+.+|+++|.+++++.+||+| +             ++++||||.+||...           
T Consensus        90 ~~~~m~--~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~-------------g~lvGIVt~rDl~~~-----------  142 (490)
T 4avf_A           90 HETAIV--RDPVTVTPSTKIIELLQMAREYGFSGFPVVE-Q-------------GELVGIVTGRDLRVK-----------  142 (490)
T ss_dssp             CCC-----------------------------------------------------------------------------
T ss_pred             cccCcc--cCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-C-------------CEEEEEEEhHHhhhc-----------
Confidence            344444  6789999999999999999999999999999 3             799999999999521           


Q ss_pred             hhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939           90 KAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV  136 (433)
Q Consensus        90 ~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~  136 (433)
                      ...+.+|+++|.+. ++++++++++++.+|+++|. ++++.+||++++
T Consensus       143 ~~~~~~V~~vMtp~-~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~  189 (490)
T 4avf_A          143 PNAGDTVAAIMTPK-DKLVTAREGTPLEEMKAKLYENRIEKMLVVDEN  189 (490)
T ss_dssp             ------------------------------------------------
T ss_pred             cccCCcHHHHhccC-CCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCC
Confidence            12357899999821 24899999999999999999 789999998754

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.85  E-value=2.3e-09  Score=112.87  Aligned_cols=113  Identities=18%  Similarity=0.218  Sum_probs=83.5

Q ss_pred             cchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCC
Q 013939           95 PVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANR  173 (433)
Q Consensus        95 pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~  173 (433)
                      .++++|..+   ++++++++++.+|+++|. +++.++||.+++                                     
T Consensus        90 ~~~~~m~~d---~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~-------------------------------------  129 (496)
T 4fxs_A           90 IFEAGVVTH---PVTVRPEQTIADVMELTHYHGFAGFPVVTEN-------------------------------------  129 (496)
T ss_dssp             HCCC--CBC---CCCBCSSSBHHHHHHHHTSSCCCEEEEECSS-------------------------------------
T ss_pred             ccccccccC---ceEECCCCCHHHHHHHHHHcCCcEEEEEccC-------------------------------------
Confidence            456778754   899999999999999999 789999998653                                     


Q ss_pred             CCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcC-C-CeEEEcCCCcHHHHHHhccc-CCCeeEEec
Q 013939          174 PSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVIN-P-NYSSIEASVPAIEATLKAPG-DPSAIAVLE  250 (433)
Q Consensus       174 ~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~-~-~vitv~~~~~v~ea~~~M~~-~isavpVVd  250 (433)
                               ++++||||..|+..         ..-...+|++  +|+ + +++++++++++.+|+++|.+ ++..+||||
T Consensus       130 ---------~~lvGiVt~rDL~~---------~~~~~~~v~d--iM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD  189 (496)
T 4fxs_A          130 ---------NELVGIITGRDVRF---------VTDLTKSVAA--VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVN  189 (496)
T ss_dssp             ---------SBEEEEEEHHHHTT---------CCCTTSBGGG--TSEEGGGCCEEECC----CGGGTCC---CCCEEEEC
T ss_pred             ---------CEEEEEEEHHHHhh---------cccCCCcHHH--HhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence                     25689999999851         1223456666  688 4 59999999999999999999 999999999


Q ss_pred             CCCCCcceEEeecchhhhhhc
Q 013939          251 PTSEDQYKIIGEISASKLWKC  271 (433)
Q Consensus       251 ~~~~g~~klvGiIS~~DL~~~  271 (433)
                      +  +|  +++|+||..|+.+.
T Consensus       190 e--~G--~l~GiIT~~DIl~~  206 (496)
T 4fxs_A          190 D--EF--QLKGMITAKDFHKA  206 (496)
T ss_dssp             T--TS--BCCEEECCC-----
T ss_pred             C--CC--CEEEeehHhHHHHh
Confidence            8  88  99999999999874

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.62  E-value=4.1e-09  Score=110.55  Aligned_cols=88  Identities=24%  Similarity=0.348  Sum_probs=0.0

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      .+++++++++++.+|+++|.+++++.+||+|.              ++++|+|+..|++.   .          .+.+|+
T Consensus       101 ~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~--------------~~lvGivt~~Dl~~---~----------~~~~v~  153 (486)
T 2cu0_A          101 EDVITIAPDETVDFALFLMEKHGIDGLPVVED--------------EKVVGIITKKDIAA---R----------EGKLVK  153 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCceEECCCCCHHHHHHHHHHcCCcEEEEEEC--------------CEEEEEEEHHHhcc---C----------CCCCHH
Confidence            68899999999999999999999999999984              58999999999974   1          146899


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                      ++|..+   ++++.+++++.++++.|. ++++++||+++
T Consensus       154 ~im~~~---~~~v~~~~~l~eal~~m~~~~~~~lpVVde  189 (486)
T 2cu0_A          154 ELMTKE---VITVPESIEVEEALKIMIENRIDRLPVVDE  189 (486)
T ss_dssp             ---------------------------------------
T ss_pred             HHccCC---CeEECCcCcHHHHHHHHHHcCCCEEEEEec
Confidence            999854   899999999999999999 78999999864

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.58  E-value=2.2e-09  Score=113.27  Aligned_cols=119  Identities=15%  Similarity=0.156  Sum_probs=67.3

Q ss_pred             cchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCC
Q 013939           95 PVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANR  173 (433)
Q Consensus        95 pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~  173 (433)
                      .+.++|..+   ++++.+++++.+|+++|. ++++++||++++..                                   
T Consensus       109 ~~~~im~~~---~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~-----------------------------------  150 (514)
T 1jcn_A          109 NFEQGFITD---PVVLSPSHTVGDVLEAKMRHGFSGIPITETGTM-----------------------------------  150 (514)
T ss_dssp             TCCTTSCSS---CCCCCC-----------------CEESCC---------------------------------------
T ss_pred             hhhhccccC---CEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCc-----------------------------------
Confidence            467888754   889999999999999999 78999999865310                                   


Q ss_pred             CCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEec
Q 013939          174 PSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLE  250 (433)
Q Consensus       174 ~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd  250 (433)
                              +++++||||..|+.+.. .      .....++++  +|++  +++++.+++++.+|+++|.+ ++..+||||
T Consensus       151 --------~~~lvGiVt~~Dl~~~~-~------~~~~~~v~~--vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd  213 (514)
T 1jcn_A          151 --------GSKLVGIVTSRDIDFLA-E------KDHTTLLSE--VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVN  213 (514)
T ss_dssp             ------------CCEECTTTTC-------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEES
T ss_pred             --------CCEEEEEEEHHHHHhhh-h------ccCCCCHHH--HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEEC
Confidence                    12458999999987531 0      112345665  6888  89999999999999999999 999999999


Q ss_pred             CCCCCcceEEeecchhhhhhcc
Q 013939          251 PTSEDQYKIIGEISASKLWKCD  272 (433)
Q Consensus       251 ~~~~g~~klvGiIS~~DL~~~~  272 (433)
                      +  +|  +++|+||.+|+.+..
T Consensus       214 ~--~g--~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          214 D--CD--ELVAIIARTDLKKNR  231 (514)
T ss_dssp             S--SS--CCC----CCCCSSCC
T ss_pred             C--CC--eEEEEEEHHHHHHHh
Confidence            8  88  999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	433
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.83
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.82
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.82
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.82
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.8
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.8
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.8
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.79
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.78
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.77
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.77
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.77
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.76
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.76
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.75
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.75
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.75
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.75
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.75
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.74
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.74
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.74
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.74
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.74
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.74
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.74
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.73
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.73
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.72
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.71
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.71
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.71
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.71
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.71
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.71
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.7
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.7
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.69
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.69
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.69
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.69
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.66
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.63
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.63
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.62
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.62
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.62
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.61
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.6
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.59
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.56
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.55

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=5.3e-21  Score=168.23  Aligned_cols=141  Identities=21%  Similarity=0.288  Sum_probs=113.5

Q ss_pred             cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcC-
Q 013939            4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKS-   82 (433)
Q Consensus         4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~-   82 (433)
                      +|..++++|||..+.++|+++.++|+.+|+++|.+++++++||++.+            .++++|+++..|++.++... 
T Consensus         9 ~l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~------------~~~~vG~is~~Dl~~~~~~~~   76 (159)
T d2v8qe2           9 FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK------------KQSFVGMLTITDFINILHRYY   76 (159)
T ss_dssp             HHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT------------TTEEEEEEEHHHHHHHHHHHH
T ss_pred             HhcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECC------------CCcEEEEEEHHHHHHHHHhcc
Confidence            57889999999888899999999999999999999999999999865            37999999999999987642 


Q ss_pred             ----CCcch----HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccc
Q 013939           83 ----DCLED----QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKW  153 (433)
Q Consensus        83 ----~~l~~----~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~  153 (433)
                          .....    ........+.++|..   ++++++|+++|.+|++.|. +|+||+||.+.+.                
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~----------------  137 (159)
T d2v8qe2          77 KSALVQIYELEEHKIETWREVYLQDSFK---PLVCISPNASLFDAVSSLIRNKIHRLPVIDPES----------------  137 (159)
T ss_dssp             HHHTTTCCCGGGCBHHHHHHHHSSSSCC---CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTT----------------
T ss_pred             ccccchhhhhhhhhcccccceeeeeecc---ceEEECCCCcHHHHHHHHHHhCCeEEEEEECCC----------------
Confidence                00000    011112344566664   4999999999999999999 7999999975422                


Q ss_pred             cccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCC
Q 013939          154 LKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGA  204 (433)
Q Consensus       154 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~  204 (433)
                                                   |+++|||||+||+||++.++++
T Consensus       138 -----------------------------g~~~GivT~~dilk~l~~~~~~  159 (159)
T d2v8qe2         138 -----------------------------GNTLYILTHKRILKFLKLFITE  159 (159)
T ss_dssp             -----------------------------CCEEEEECHHHHHHHHHHHSCS
T ss_pred             -----------------------------CeEEEEEeHHHHHHHHHHHcCC
Confidence                                         3568999999999999887653

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.82  E-value=8.4e-21  Score=170.11  Aligned_cols=147  Identities=17%  Similarity=0.166  Sum_probs=115.7

Q ss_pred             ccccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcC
Q 013939            3 SVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKS   82 (433)
Q Consensus         3 ~~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~   82 (433)
                      .|+..++++|+|....++++++++++|.+|+++|.+++++++||||++            .++++|++|..||+.++...
T Consensus        15 ~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~------------~~~~vGiis~~Di~~~l~~~   82 (179)
T d2ooxe1          15 AFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE------------ANKFAGLLTMADFVNVIKYY   82 (179)
T ss_dssp             HHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETT------------TTEEEEEECHHHHHHHHHHH
T ss_pred             HHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCC------------CCeeEEEEeechHHHHHHhc
Confidence            356889999999877789999999999999999999999999999965            37999999999999987531


Q ss_pred             ---CCcch-HH-------hh--cCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhh
Q 013939           83 ---DCLED-QD-------KA--MKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSIL  148 (433)
Q Consensus        83 ---~~l~~-~~-------~~--l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~  148 (433)
                         ..... ..       ..  ...++..+|..   ++++++++++|.+|++.|. +++||+||+++.+.          
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~----------  149 (179)
T d2ooxe1          83 YQSSSFPEAIAEIDKFRLLGLREVERKIGAIPP---ETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGE----------  149 (179)
T ss_dssp             HHHCSCGGGGGGGGGSBHHHHHHHHHHTTCSCS---SCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTT----------
T ss_pred             cccccchhhhhhhhccchhhhcccceeeeeccc---CceEECCCCcHHHHHHHhhhcCceEEEEEecCCC----------
Confidence               11000 00       00  01234456664   4999999999999999999 79999999986541          


Q ss_pred             ccccccccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCC
Q 013939          149 YNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGAL  205 (433)
Q Consensus       149 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l  205 (433)
                                                     ++++.++|||||+||+|||+.|..+.
T Consensus       150 -------------------------------~~~~~vvgiiT~~dIlk~l~~~~~~~  175 (179)
T d2ooxe1         150 -------------------------------TGSEMIVSVLTQYRILKFISMNCKET  175 (179)
T ss_dssp             -------------------------------TCCEEEEEEEEHHHHHHHHHTTCGGG
T ss_pred             -------------------------------cCCCcEEEEEeHHHHHHHHHHhhhHh
Confidence                                           12346799999999999998876654

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.82  E-value=5.9e-20  Score=161.35  Aligned_cols=147  Identities=14%  Similarity=0.244  Sum_probs=111.4

Q ss_pred             CcccccCcC-CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhh
Q 013939          212 SISSLGVIN-PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFV  289 (433)
Q Consensus       212 tV~~L~im~-~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~  289 (433)
                      +++++.+.+ ++++++.+++|+.+|+++|.+ +++++||+|+  +|  +++|+||.+|+++...... ......++.+++
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~--~~--~~vG~it~~Dl~~~~~~~~-~~~~~~~v~~~~   76 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNS--EG--TLLNVYESVDVMHLIQDGD-YSNLDLSVGEAL   76 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG--GG--BEEEEEEHHHHHHHHGGGC-GGGGGSBHHHHH
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc--cc--eEEEEEEeeeeeehhcccc-ccccccchhhhe
Confidence            356665554 579999999999999999999 9999999998  78  9999999999987541100 000111111111


Q ss_pred             hccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCC
Q 013939          290 MGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITS  369 (433)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~  369 (433)
                      .                          .            +                         ..+..++++|++++
T Consensus        77 ~--------------------------~------------~-------------------------~~~~~~~~~v~~~~   93 (153)
T d2ooxe2          77 L--------------------------K------------R-------------------------PANFDGVHTCRATD   93 (153)
T ss_dssp             H--------------------------T------------S-------------------------CCCSSCCCEECTTC
T ss_pred             e--------------------------e------------e-------------------------ecccCCCeEECCCC
Confidence            1                          0            0                         11467889999999


Q ss_pred             CHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCCCcCCCCCCccccc
Q 013939          370 SLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTPANRTYEGFA  428 (433)
Q Consensus       370 sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~~~~~~~~~~~~~~  428 (433)
                      +|.++++.|.++++|++||||++  |+++||||++||++++..++........-.+-|.
T Consensus        94 ~l~~~~~~m~~~~~~~l~Vvd~~--~~lvGivT~~Dil~~~~~~~~~~~~~~~~~~~~e  150 (153)
T d2ooxe2          94 RLDGIFDAIKHSRVHRLFVVDEN--LKLEGILSLADILNYIIYDKTTTPGVPEQTDNFE  150 (153)
T ss_dssp             BHHHHHHHHHHSCCSEEEEECTT--CBEEEEEEHHHHHHHHHSCTTCCSSCSCSSCSSS
T ss_pred             cHHHHHHhhhhceeeEEEEEcCC--CEEEEEEEHHHHHHHHHcCccccCCcchhhhhHH
Confidence            99999999999999999999987  9999999999999999987775544444444443

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=1.6e-20  Score=164.58  Aligned_cols=150  Identities=15%  Similarity=0.145  Sum_probs=101.8

Q ss_pred             CcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhh
Q 013939          212 SISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVM  290 (433)
Q Consensus       212 tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~  290 (433)
                      +|++  +|+++|+++.+++|+.+|+++|.+ +++++||||+  +|  +++|+||.+|+..+...........     ...
T Consensus         5 ~v~~--~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~--~~--~lvG~it~~Dl~~~~~~~~~~~~~~-----~~~   73 (156)
T d2yzqa1           5 EIEP--YYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDS--EG--NLVGIVDETDLLRDSEIVRIMKSTE-----LAA   73 (156)
T ss_dssp             BSTT--TSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT--TS--CEEEEEEGGGGGGCGGGCC--------------
T ss_pred             CHHH--HhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeC--CC--CceeEEeeeechhhhcccccccccc-----ccc
Confidence            4554  799999999999999999999999 9999999998  88  9999999999987652111100000     000


Q ss_pred             ccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCC
Q 013939          291 GVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSS  370 (433)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~s  370 (433)
                      .............          .        ..+... .... .           ..++     +.|+++++||+++++
T Consensus        74 ~~~~~~~~~~~~~----------~--------~~~~~~-~~~~-~-----------~~v~-----~~m~~~~~tv~~~~~  117 (156)
T d2yzqa1          74 SSEEEWILESHPT----------L--------LFEKFE-LQLP-N-----------KPVA-----EIMTRDVIVATPHMT  117 (156)
T ss_dssp             ------------------------------------------C-C-----------CBGG-----GTCBSSCCCBCTTSB
T ss_pred             chhhhhhhhhhhh----------h--------hHHHhh-hccc-C-----------CEee-----hhcccCceEECcccc
Confidence            0000000000000          0        000000 0000 0           0011     447889999999999


Q ss_pred             HHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHH
Q 013939          371 LAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAV  410 (433)
Q Consensus       371 L~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i  410 (433)
                      |.+++..|.++++||+||||++  |+++||||++||+++|
T Consensus       118 l~~~~~~m~~~~~~~lpVvd~~--g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1         118 VHEVALKMAKYSIEQLPVIRGE--GDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             HHHHHHHHHHHTCSEEEEEETT--TEEEEEEEHHHHGGGG
T ss_pred             cHHHHHHHHHcCeeEEEEEeCC--CEEEEEEEHHHHHHHh
Confidence            9999999999999999999998  9999999999999986

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=5.7e-20  Score=158.98  Aligned_cols=135  Identities=19%  Similarity=0.236  Sum_probs=101.5

Q ss_pred             CCCCCcccccC-cCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccc
Q 013939          208 LPLSSISSLGV-INPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSA  285 (433)
Q Consensus       208 l~~~tV~~L~i-m~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~  285 (433)
                      +..+++++|++ +.++++++.+++|+.+|+++|.+ +++++||+|+  +|  +++|+||.+|++++.....         
T Consensus         3 ~~~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~--~~--~~vG~it~~Di~~~~~~~~---------   69 (140)
T d2nyca1           3 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE--NG--YLINVYEAYDVLGLIKGGI---------   69 (140)
T ss_dssp             GGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT--TC--BEEEEEEHHHHHHHHHTC----------
T ss_pred             cccCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec--CC--eEcceehhhHHHHHHhhcc---------
Confidence            45678899875 45689999999999999999999 9999999998  88  9999999999987641100         


Q ss_pred             hhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEe
Q 013939          286 GQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTC  365 (433)
Q Consensus       286 ~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~  365 (433)
                         ..       .  +.. .    .. ..            +. ..                        ..+..++++|
T Consensus        70 ---~~-------~--~~~-~----~~-~~------------~~-~~------------------------~~~~~~~~~v   94 (140)
T d2nyca1          70 ---YN-------D--LSL-S----VG-EA------------LM-RR------------------------SDDFEGVYTC   94 (140)
T ss_dssp             ---------------CCS-B----HH-HH------------HH-HC------------------------C------CEE
T ss_pred             ---cc-------c--ccc-c----hh-hh------------hh-hh------------------------hhcccccEEE
Confidence               00       0  000 0    00 00            00 00                        1135688999


Q ss_pred             cCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          366 KITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       366 ~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      +++++|.+++++|.++++|++||||++  |+++||||++||++++..
T Consensus        95 ~~~~~l~~~~~~~~~~~~~~l~VVd~~--~~l~GiIt~~Dii~~l~~  139 (140)
T d2nyca1          95 TKNDKLSTIMDNIRKARVHRFFVVDDV--GRLVGVLTLSDILKYILL  139 (140)
T ss_dssp             CTTSBHHHHHHHHHHHTCSEEEEECTT--SBEEEEEEHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHhcCeeEEEEEeCC--CeEEEEEEHHHHHHHHhc
Confidence            999999999999999999999999998  999999999999999863

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.80  E-value=1.9e-19  Score=153.32  Aligned_cols=118  Identities=15%  Similarity=0.152  Sum_probs=97.7

Q ss_pred             cCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCC
Q 013939          219 INPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVT  297 (433)
Q Consensus       219 m~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~  297 (433)
                      |..+++++++++++.+|+++|.+ +++++||||+..+|  +++|+||.+|++....                        
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~--~lvGivt~~Di~~~~~------------------------   56 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANR--KLVGIITNRDMRFISD------------------------   56 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTC--BEEEEEEHHHHHHCSC------------------------
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCC--eEEEEeEHHHHHHhhc------------------------
Confidence            45678899999999999999999 99999999963245  9999999999875420                        


Q ss_pred             CCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHH
Q 013939          298 PRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQ  377 (433)
Q Consensus       298 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~  377 (433)
                                     .+  .             ..  ..                   ..+..++++|++++++.+|+++
T Consensus        57 ---------------~~--~-------------~~--~~-------------------~~~~~~~~~~~~~~~l~~a~~~   85 (126)
T d1zfja4          57 ---------------YN--A-------------PI--SE-------------------HMTSEHLVTAAVGTDLETAERI   85 (126)
T ss_dssp             ---------------SS--S-------------BT--TT-------------------SCCCSCCCCEETTCCHHHHHHH
T ss_pred             ---------------cC--C-------------ce--ee-------------------eeeccceeecCCCCCHHHHHHH
Confidence                           00  0             00  00                   1247789999999999999999


Q ss_pred             HHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          378 MLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       378 m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      |.+++++++||||++  |+++||||++||++++..+.+
T Consensus        86 m~~~~~~~lpVVd~~--g~lvGiiT~~Dil~~~~~p~a  121 (126)
T d1zfja4          86 LHEHRIEKLPLVDNS--GRLSGLITIKDIEKVIEFPHA  121 (126)
T ss_dssp             HHHTTCSEEEEECTT--SBEEEEEEHHHHHHHHHCTTC
T ss_pred             HHhcCCcEEEEEcCC--CeEEEEEEHHHHHHHhhCccc
Confidence            999999999999998  999999999999999876554

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=6.6e-20  Score=159.13  Aligned_cols=136  Identities=17%  Similarity=0.212  Sum_probs=106.9

Q ss_pred             CCCCcccccCcC-CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccch
Q 013939          209 PLSSISSLGVIN-PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAG  286 (433)
Q Consensus       209 ~~~tV~~L~im~-~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~  286 (433)
                      ..++++++.+.+ ++++++.+++|+.+|+++|.+ +++++||+|+  +|  +++|+||.+|+++.....           
T Consensus         7 ~~~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~--~~--~~~Gvit~~di~~~l~~~-----------   71 (145)
T d2v8qe1           7 MSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE--KG--RVVDIYSKFDVINLAAEK-----------   71 (145)
T ss_dssp             GGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT--TS--BEEEEEEGGGTGGGGGSS-----------
T ss_pred             hhCCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCccccccc--CC--ceEEEEEcchhhhhhhcc-----------
Confidence            456788887765 579999999999999999999 9999999998  88  999999999998754100           


Q ss_pred             hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939          287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK  366 (433)
Q Consensus       287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~  366 (433)
                          .      ...+.. .+.     +.            .   .                      ....+..++++|.
T Consensus        72 ----~------~~~~~~-~v~-----~~------------~---~----------------------~~~~~~~~~~~v~   98 (145)
T d2v8qe1          72 ----T------YNNLDV-SVT-----KA------------L---Q----------------------HRSHYFEGVLKCY   98 (145)
T ss_dssp             ----C------CCCCSS-BHH-----HH------------G---G----------------------GCCSCCCSCCEEC
T ss_pred             ----c------ccchhh-hhh-----hc------------c---c----------------------hhhhccCCCeEEC
Confidence                0      000000 000     00            0   0                      0022577899999


Q ss_pred             CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCC
Q 013939          367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQP  414 (433)
Q Consensus       367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~  414 (433)
                      +++++.+++++|.++++|++||||++  |+++||||++||+++|...|
T Consensus        99 ~~~~l~~~~~~m~~~~~~~l~Vvd~~--g~l~GiVt~~dii~~lv~~~  144 (145)
T d2v8qe1          99 LHETLEAIINRLVEAEVHRLVVVDEH--DVVKGIVSLSDILQALVLTG  144 (145)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTT--SBEEEEEEHHHHHHHHHSSC
T ss_pred             CCCcHHHHHHHHHHcCceEEEEEccC--CEEEEEEEHHHHHHHHHhcC
Confidence            99999999999999999999999987  99999999999999998765

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.79  E-value=2.9e-20  Score=157.76  Aligned_cols=120  Identities=18%  Similarity=0.239  Sum_probs=97.9

Q ss_pred             CcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhh
Q 013939          212 SISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVM  290 (433)
Q Consensus       212 tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~  290 (433)
                      |+++  +|+++++++.+++++.+|+++|.+ +++++||+|+  +|  +++|+||++|++.....               .
T Consensus         2 t~~d--iM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~--~~--~~~Giit~~Di~~~~~~---------------~   60 (123)
T d1y5ha3           2 TARD--IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD--DD--RLHGMLTDRDIVIKGLA---------------A   60 (123)
T ss_dssp             CHHH--HSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG--GG--BEEEEEEHHHHHHTTGG---------------G
T ss_pred             CHHH--hcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEec--cc--hhhhhhhhhhHhhhhhh---------------c
Confidence            4555  699999999999999999999999 9999999998  78  99999999999754300               0


Q ss_pred             ccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCC
Q 013939          291 GVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSS  370 (433)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~s  370 (433)
                         +.. +              ..               ..+                 +     ..|+.++++|+++++
T Consensus        61 ---~~~-~--------------~~---------------~~v-----------------~-----~im~~~~~~v~~~~~   85 (123)
T d1y5ha3          61 ---GLD-P--------------NT---------------ATA-----------------G-----ELARDSIYYVDANAS   85 (123)
T ss_dssp             ---TCC-T--------------TT---------------SBH-----------------H-----HHHTTCCCCEETTCC
T ss_pred             ---CCC-c--------------cc---------------ceE-----------------E-----EEeeccceeeeecch
Confidence               000 0              00               000                 0     225789999999999


Q ss_pred             HHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHH
Q 013939          371 LAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAV  410 (433)
Q Consensus       371 L~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i  410 (433)
                      +.+|+++|.+++++++||+|+   |+++||||++||++++
T Consensus        86 ~~~~~~~m~~~~~~~lpVvd~---~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          86 IQEMLNVMEEHQVRRVPVISE---HRLVGIVTEADIARHL  122 (123)
T ss_dssp             HHHHHHHHHHHTCSEEEEEET---TEEEEEEEHHHHHHTC
T ss_pred             HHHHHHHHHHcCceEEEEEEC---CEEEEEEEHHHHHhhC
Confidence            999999999999999999996   7999999999999864

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.78  E-value=3.5e-19  Score=154.09  Aligned_cols=129  Identities=13%  Similarity=0.168  Sum_probs=101.1

Q ss_pred             CcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhh
Q 013939          212 SISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVM  290 (433)
Q Consensus       212 tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~  290 (433)
                      ++++  +|+++++++.+++++.+|+++|.+ +++++||+|+  +|  +++|+||.+|++.+... .   +..        
T Consensus         3 ~v~d--iM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~--~~--~~~Giit~~dl~~~~~~-~---~~~--------   64 (139)
T d2o16a3           3 KVED--MMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA--NK--KLLGIVSQRDLLAAQES-S---LQR--------   64 (139)
T ss_dssp             BGGG--TSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT--TC--BEEEEEEHHHHHHHHHH-H---CC---------
T ss_pred             EHHH--hCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecc--cc--cccccccHHHHHHHHHh-h---hhh--------
Confidence            3554  799999999999999999999999 9999999998  88  99999999999875411 0   000        


Q ss_pred             ccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCC
Q 013939          291 GVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSS  370 (433)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~s  370 (433)
                          .....              ..           +....+                 +     ..|.+++++|+++++
T Consensus        65 ----~~~~~--------------~~-----------~~~~~v-----------------~-----~im~~~~~~v~~~~~   93 (139)
T d2o16a3          65 ----SAQGD--------------SL-----------AFETPL-----------------F-----EVMHTDVTSVAPQAG   93 (139)
T ss_dssp             -------------------------------------CCCBH-----------------H-----HHSCSCEEEBCTTSB
T ss_pred             ----hhccc--------------cc-----------ccccch-----------------h-----Hhhccccccccccch
Confidence                00000              00           000000                 0     336889999999999


Q ss_pred             HHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          371 LAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       371 L~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      +.+|+.+|.+++++++||+|+   |+++||||++||++++.+
T Consensus        94 l~~a~~~m~~~~~~~lpVvd~---~~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3          94 LKESAIYMQKHKIGCLPVVAK---DVLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             HHHHHHHHHHTTCSCEEEEET---TEEEEEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCceEEEEEEC---CEEEEEEEHHHHHHHHHH
Confidence            999999999999999999996   799999999999999875

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=3.8e-19  Score=153.87  Aligned_cols=134  Identities=14%  Similarity=0.232  Sum_probs=100.4

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV  296 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~  296 (433)
                      +|+++++++.+++|+.+|+++|.+ +++++||+|+  +|  +++|+||.+||.++...   .....+....+..      
T Consensus         9 ~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~--~~--~~vGiis~~Dl~~~~~~---~~~~~~~~~~~~~------   75 (145)
T d1o50a3           9 LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR--DN--KLVGMIPVMHLLKVSGF---HFFGFIPKEELIR------   75 (145)
T ss_dssp             SSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE--TT--EEEEEEEHHHHHHHHHH---HHHCCCC------------
T ss_pred             hCCCCCEEECCcCcHHHHHHHHHHcCCceEEEecc--Cc--ceeeeeccchhhhhhhc---ccccccchhHHHH------
Confidence            699999999999999999999999 9999999998  78  99999999999887511   1110000000000      


Q ss_pred             CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939          297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA  376 (433)
Q Consensus       297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~  376 (433)
                                      ..         ...+....                 +      .....++++|++++++.+|+.
T Consensus        76 ----------------~~---------~~~~~~~~-----------------~------~~~~~~~~~i~~~~~l~~a~~  107 (145)
T d1o50a3          76 ----------------SS---------MKRLIAKN-----------------A------SEIMLDPVYVHMDTPLEEALK  107 (145)
T ss_dssp             -----------------C---------CCCCSSCB-----------------H------HHHCBCCCCBCTTSBHHHHHH
T ss_pred             ----------------hh---------hhhccccC-----------------H------HHHcCCCEEEcCCCCHHHHHH
Confidence                            00         00000000                 0      112356789999999999999


Q ss_pred             HHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCC
Q 013939          377 QMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQP  414 (433)
Q Consensus       377 ~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~  414 (433)
                      +|.++++|++||||++  |+++|+||.+||++++.++-
T Consensus       108 ~m~~~~i~~lpVVd~~--g~i~Gvit~~dil~~l~~~~  143 (145)
T d1o50a3         108 LMIDNNIQEMPVVDEK--GEIVGDLNSLEILLALWKGR  143 (145)
T ss_dssp             HHHHHTCSEEEEECTT--SCEEEEEEHHHHHHHHHHSC
T ss_pred             HHHHcCceEEEEEeCC--CeEEEEEEHHHHHHHHHhcC
Confidence            9999999999999987  99999999999999998753

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.77  E-value=3.7e-19  Score=151.79  Aligned_cols=121  Identities=15%  Similarity=0.277  Sum_probs=97.0

Q ss_pred             CCcccccCcC---CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccch
Q 013939          211 SSISSLGVIN---PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAG  286 (433)
Q Consensus       211 ~tV~~L~im~---~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~  286 (433)
                      +||++  +|+   .+++++.+++|+.+|+++|.+ +++++||+|   +|  +++|+||.+|+++....            
T Consensus         2 ~tV~d--im~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~---~~--~~vGiit~~Di~~~~~~------------   62 (127)
T d2rc3a1           2 KTVKH--LLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK---DE--KLVGILTERDFSRKSYL------------   62 (127)
T ss_dssp             CBHHH--HHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE---TT--EEEEEEEHHHHHHHGGG------------
T ss_pred             ccHHH--HHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE---CC--eEEEEEEccchhhhhhh------------
Confidence            45665  344   479999999999999999999 999999998   47  99999999999754200            


Q ss_pred             hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939          287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK  366 (433)
Q Consensus       287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~  366 (433)
                            .+. ++.              .               ..+                 +     ..|+.++++|+
T Consensus        63 ------~~~-~~~--------------~---------------~~v-----------------~-----~im~~~~~~v~   84 (127)
T d2rc3a1          63 ------LDK-PVK--------------D---------------TQV-----------------K-----EIMTRQVAYVD   84 (127)
T ss_dssp             ------SSS-CGG--------------G---------------SBG-----------------G-----GTSBCSCCCBC
T ss_pred             ------hcc-ccc--------------c---------------eeE-----------------e-----eeccceeEEec
Confidence                  000 000              0               000                 0     33688999999


Q ss_pred             CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHH
Q 013939          367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVT  411 (433)
Q Consensus       367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~  411 (433)
                      +++++.+|+.+|.+++++++||+|+   |+++||||.+||++++.
T Consensus        85 ~~~~l~~a~~~m~~~~~~~lpVvd~---~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          85 LNNTNEDCMALITEMRVRHLPVLDD---GKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             TTCBHHHHHHHHHHHTCSEEEEEET---TEEEEEEEHHHHHHHHH
T ss_pred             cCccHHHHHHHHHHCCCcEEEEEEC---CEEEEEEEHHHHHHHHh
Confidence            9999999999999999999999985   89999999999999875

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.77  E-value=4.8e-19  Score=154.01  Aligned_cols=123  Identities=15%  Similarity=0.180  Sum_probs=101.4

Q ss_pred             CcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhh
Q 013939          212 SISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVM  290 (433)
Q Consensus       212 tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~  290 (433)
                      +|++  +|+++++++++++++.+|++.|.+ +++.+||+|+  +|  +++|+||.+|+.+....                
T Consensus         4 ~v~d--im~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~--~~--~~~Giit~~di~~~~~~----------------   61 (142)
T d1pvma4           4 RVEK--IMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD--NG--NDVGLLSERSIIKRFIP----------------   61 (142)
T ss_dssp             BGGG--TSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT--TS--CEEEEEEHHHHHHHTGG----------------
T ss_pred             EHHH--hCCCCCcEECCcCcHHHHHHHHHHCCCceEeeecc--CC--cccceEEeechhhhhhh----------------
Confidence            4565  799999999999999999999999 9999999998  78  99999999999754200                


Q ss_pred             ccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCC
Q 013939          291 GVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSS  370 (433)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~s  370 (433)
                         ..                 .....            ..+                 +     ..|.+++++|+++++
T Consensus        62 ---~~-----------------~~~~~------------~~v-----------------~-----~im~~~~~~v~~~~~   87 (142)
T d1pvma4          62 ---RN-----------------KKPDE------------VPI-----------------R-----LVMRKPIPKVKSDYD   87 (142)
T ss_dssp             ---GC-----------------CCGGG------------SBG-----------------G-----GTSBSSCCEEETTCB
T ss_pred             ---hc-----------------ccccc------------ccc-----------------c-----cccccccccccchhh
Confidence               00                 00000            001                 0     236789999999999


Q ss_pred             HHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          371 LAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       371 L~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      |.+|+++|.+++++++||||++  |+++|+||..||++++.+
T Consensus        88 l~~~~~~m~~~~~~~lpVvd~~--g~l~Giit~~Dil~~l~~  127 (142)
T d1pvma4          88 VKDVAAYLSENGLERCAVVDDP--GRVVGIVTLTDLSRYLSR  127 (142)
T ss_dssp             HHHHHHHHHHHTCSEEEEECTT--CCEEEEEEHHHHTTTSCH
T ss_pred             HHHHHHHHHHcCCcEEEEEecC--CEEEEEEEHHHHHHHHhh
Confidence            9999999999999999999998  999999999999998754

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.76  E-value=1.5e-18  Score=148.56  Aligned_cols=130  Identities=15%  Similarity=0.213  Sum_probs=109.5

Q ss_pred             hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch
Q 013939            8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED   87 (433)
Q Consensus         8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~   87 (433)
                      ++|+++|+.+.+++++++++|+++|+++|.+++++++||+|..             ++++|+++..||+.++.+..... 
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~-------------~~~vGiit~~di~~~~~~~~~~~-   67 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-------------YRLHGLIGTNMIMNSIFGLERIE-   67 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-------------CBEEEEEEHHHHHHHHBCSSSBC-
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecc-------------cccccEEEcchhHHHhhcccccc-
Confidence            5799999878899999999999999999999999999999863             79999999999999987643322 


Q ss_pred             HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHHcCCCeEEeeecCcccccccchhhhccccccccccccCcccccc
Q 013939           88 QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNL  167 (433)
Q Consensus        88 ~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  167 (433)
                      .......+|+++|..+   ++++++++++.+|+++|.+. +.+||++++                               
T Consensus        68 ~~~~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~-~~l~Vvd~~-------------------------------  112 (132)
T d1yava3          68 FEKLDQITVEEVMLTD---IPRLHINDPIMKGFGMVINN-GFVCVENDE-------------------------------  112 (132)
T ss_dssp             GGGTTTSBHHHHSBCS---CCEEETTSBHHHHHHHTTTC-SEEEEECTT-------------------------------
T ss_pred             cccccccccccccccc---ccccccchhHHHHHHHHHhC-CEEEEEccC-------------------------------
Confidence            2334568999999865   99999999999999999743 458887543                               


Q ss_pred             ccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHc
Q 013939          168 IANANRPSSSSTTSVRDKFCCLSREDVIRFLIGC  201 (433)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~  201 (433)
                                     +..+||||++|+++++..+
T Consensus       113 ---------------~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3         113 ---------------QVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             ---------------CBEEEEEEHHHHHHHHHHH
T ss_pred             ---------------CEEEEEEEHHHHHHHHHhh
Confidence                           2468999999999999753

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.76  E-value=1.4e-18  Score=148.07  Aligned_cols=122  Identities=15%  Similarity=0.164  Sum_probs=101.5

Q ss_pred             CCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhh
Q 013939          210 LSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQF  288 (433)
Q Consensus       210 ~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f  288 (433)
                      ...|++  +|+++++++.+++++.+|+++|.+ +++++||+|   +|  +++|+||.+|++++...              
T Consensus         3 ~~~V~d--~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d---~~--~~~Givt~~dl~~~~~~--------------   61 (127)
T d2ef7a1           3 EEIVKE--YMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD---GN--KPVGIITERDIVKAIGK--------------   61 (127)
T ss_dssp             CCBGGG--TSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE---TT--EEEEEEEHHHHHHHHHT--------------
T ss_pred             ccCHHH--hCCCCCeEECCcCcHHHHHHHHHHcCCceEEeec---cc--chhhhcchhHHHHHHHh--------------
Confidence            456676  799999999999999999999999 999999998   47  99999999999875310              


Q ss_pred             hhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCC
Q 013939          289 VMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKIT  368 (433)
Q Consensus       289 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~  368 (433)
                            .                 ....             ..+                 +     ..+..++++|+++
T Consensus        62 ------~-----------------~~~~-------------~~v-----------------~-----~~~~~~~~~v~~~   83 (127)
T d2ef7a1          62 ------G-----------------KSLE-------------TKA-----------------E-----EFMTASLITIRED   83 (127)
T ss_dssp             ------T-----------------CCTT-------------CBG-----------------G-----GTSEECCCCEETT
T ss_pred             ------h-----------------cccc-------------chh-----------------h-----hhhhhhccccccc
Confidence                  0                 0000             000                 0     2257799999999


Q ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          369 SSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       369 ~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      +++.+|++.|.+++++++||||++  |+++|+||+.||++++..
T Consensus        84 ~~l~~~~~~m~~~~~~~l~Vvd~~--~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          84 SPITGALALMRQFNIRHLPVVDDK--GNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             SBHHHHHHHHHHHTCSEEEEECTT--SCEEEEEEHHHHHHHHHH
T ss_pred             cchhHHHHHHHHcCceEEEEEeCC--CeEEEEEEHHHHHHHHHh
Confidence            999999999999999999999998  999999999999999864

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=2e-18  Score=150.61  Aligned_cols=112  Identities=18%  Similarity=0.199  Sum_probs=97.7

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-C-----CCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhc
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-D-----PSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMG  291 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~-----isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~  291 (433)
                      +|+++++++.+++|+.+|+++|.+ +     ++.+||||+  +|  +++|+|+.+|++.....                 
T Consensus         6 iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~--~~--~l~G~v~~~dl~~~~~~-----------------   64 (144)
T d2yvxa2           6 LMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE--KG--RLKGVLSLRDLIVADPR-----------------   64 (144)
T ss_dssp             GCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCT--TC--BBCCBCBHHHHTTSCTT-----------------
T ss_pred             ccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecC--CC--CEecccchhhhhhcccc-----------------
Confidence            799999999999999999999976 3     788999998  88  99999999999764300                 


Q ss_pred             cccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCH
Q 013939          292 VEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSL  371 (433)
Q Consensus       292 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL  371 (433)
                                           .                 .+                 .     ..|++++++++|++++
T Consensus        65 ---------------------~-----------------~v-----------------~-----~im~~~~~~v~~~~~~   84 (144)
T d2yvxa2          65 ---------------------T-----------------RV-----------------A-----EIMNPKVVYVRTDTDQ   84 (144)
T ss_dssp             ---------------------C-----------------BS-----------------T-----TTSBSSCCCEESSCCH
T ss_pred             ---------------------c-----------------ch-----------------H-----HhcccCCccCCCCChH
Confidence                                 0                 00                 0     2368899999999999


Q ss_pred             HHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          372 AAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       372 ~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      .+|++.|.+++++++||||++  |+|+||||..||++++..
T Consensus        85 ~~a~~~m~~~~~~~lPVVd~~--g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          85 EEVARLMADYDFTVLPVVDEE--GRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             HHHHHHHHHSCCSEEEEECSS--CBEEEEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEEeEC--CEEEEEEEHHHHHHHHHH
Confidence            999999999999999999998  999999999999998865

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=4.5e-18  Score=143.71  Aligned_cols=118  Identities=17%  Similarity=0.215  Sum_probs=102.4

Q ss_pred             cccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhc
Q 013939          213 ISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMG  291 (433)
Q Consensus       213 V~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~  291 (433)
                      |++  +|+++++++.+++|+.+|+++|.+ +++++||+|+  +|  +++|+||.+|+++....                 
T Consensus         3 v~~--~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~--~~--~~~Gii~~~dl~~~~~~-----------------   59 (121)
T d1vr9a3           3 VKK--WVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR--EG--HFRGVVNKEDLLDLDLD-----------------   59 (121)
T ss_dssp             GGG--GCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT--TS--BEEEEEEGGGGTTSCTT-----------------
T ss_pred             chh--hhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeC--Cc--eeEEEeehhhhhhhhcc-----------------
Confidence            444  699999999999999999999999 9999999998  78  99999999999764300                 


Q ss_pred             cccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCH
Q 013939          292 VEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSL  371 (433)
Q Consensus       292 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL  371 (433)
                                            .                .+      .                ..+..++++|++++++
T Consensus        60 ----------------------~----------------~v------~----------------~~~~~~~~~v~~~~~l   79 (121)
T d1vr9a3          60 ----------------------S----------------SV------F----------------NKVSLPDFFVHEEDNI   79 (121)
T ss_dssp             ----------------------S----------------BS------G----------------GGCBCTTCCEETTSBH
T ss_pred             ----------------------c----------------cc------c----------------ccccCccEEECCCCCH
Confidence                                  0                00      0                2256788999999999


Q ss_pred             HHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939          372 AAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA  415 (433)
Q Consensus       372 ~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~  415 (433)
                      .+++.+|.+++++++||||++  |+++|+||+.||++++..+.+
T Consensus        80 ~~~~~~~~~~~~~~lpVvde~--g~~~Gvit~~dil~~l~~~la  121 (121)
T d1vr9a3          80 THALLLFLEHQEPYLPVVDEE--MRLKGAVSLHDFLEALIEALA  121 (121)
T ss_dssp             HHHHHHHHHCCCSEEEEECTT--CBEEEEEEHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhcCceeeeeECCC--CeEEEEEEHHHHHHHHHHhcC
Confidence            999999999999999999998  999999999999999998764

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=9.1e-19  Score=148.36  Aligned_cols=105  Identities=21%  Similarity=0.261  Sum_probs=89.8

Q ss_pred             hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch
Q 013939            8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED   87 (433)
Q Consensus         8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~   87 (433)
                      ++++|+|.  ++++++.+++|+.+|+++|.+++++++||+|++             ++++|+||.+||+.++.....   
T Consensus         1 tt~~diM~--~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-------------~~~~Giit~~Di~~~~~~~~~---   62 (123)
T d1y5ha3           1 TTARDIMN--AGVTCVGEHETLTAAAQYMREHDIGALPICGDD-------------DRLHGMLTDRDIVIKGLAAGL---   62 (123)
T ss_dssp             CCHHHHSE--ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-------------GBEEEEEEHHHHHHTTGGGTC---
T ss_pred             CCHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCCceEEEecc-------------chhhhhhhhhhHhhhhhhcCC---
Confidence            47899995  678999999999999999999999999999863             799999999999986543211   


Q ss_pred             HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           88 QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        88 ~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                        .....+++++|.++   ++++++++++.+|+++|. ++++++||.++
T Consensus        63 --~~~~~~v~~im~~~---~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~  106 (123)
T d1y5ha3          63 --DPNTATAGELARDS---IYYVDANASIQEMLNVMEEHQVRRVPVISE  106 (123)
T ss_dssp             --CTTTSBHHHHHTTC---CCCEETTCCHHHHHHHHHHHTCSEEEEEET
T ss_pred             --CcccceEEEEeecc---ceeeeecchHHHHHHHHHHcCceEEEEEEC
Confidence              11246789999865   999999999999999999 89999999864

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=9.9e-19  Score=148.22  Aligned_cols=113  Identities=17%  Similarity=0.162  Sum_probs=85.5

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV  296 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~  296 (433)
                      +|+++++++++++++.+|+++|.+ +++++||+|+  +|  +++|+||.+|++....                       
T Consensus         6 iM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~--~~--~~~G~it~~dl~~~~~-----------------------   58 (122)
T d2yzqa2           6 IMTQNPVTITLPATRNYALELFKKYKVRSFPVVNK--EG--KLVGIISVKRILVNPD-----------------------   58 (122)
T ss_dssp             HSEESCCCEESSCC------------CCEEEEECT--TC--CEEEEEESSCC----------------------------
T ss_pred             ccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEec--cc--cchhhhhcchhhhhhc-----------------------
Confidence            689999999999999999999999 9999999998  88  9999999999874320                       


Q ss_pred             CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939          297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA  376 (433)
Q Consensus       297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~  376 (433)
                                      +.                .+                 +     ..+..++++|++++++.+++.
T Consensus        59 ----------------~~----------------~~-----------------~-----~~~~~~~~~v~~~~~l~~~~~   84 (122)
T d2yzqa2          59 ----------------EE----------------QL-----------------A-----MLVKRDVPVVKENDTLKKAAK   84 (122)
T ss_dssp             -----------------------------------------------------------CCCBSCCCEEETTSBHHHHHH
T ss_pred             ----------------cc----------------ch-----------------h-----hccccceeecchhhHHHHHHH
Confidence                            00                00                 0     225778999999999999999


Q ss_pred             HHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          377 QMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       377 ~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      +|.+++++++||||++  |+++|+||++||++++..+
T Consensus        85 ~~~~~~~~~lpVvd~~--~~liGiit~~dil~~~~~~  119 (122)
T d2yzqa2          85 LMLEYDYRRVVVVDSK--GKPVGILTVGDIIRRYFAK  119 (122)
T ss_dssp             HHHHHTCSEEEEECTT--SCEEEEEEHHHHHHHTTTT
T ss_pred             HHHHcCcEEEEEEeCC--CEEEEEEEHHHHHHHHHhH
Confidence            9999999999999998  9999999999999988754

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=8.1e-18  Score=144.23  Aligned_cols=124  Identities=18%  Similarity=0.311  Sum_probs=102.3

Q ss_pred             CCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhh
Q 013939          210 LSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQF  288 (433)
Q Consensus       210 ~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f  288 (433)
                      ..+|++  +|+++++++.+++++.+|+++|.+ +++++||||+  +|  +++|+||.+|++.....              
T Consensus         4 ~~pV~~--im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~--~~--~~~Giit~~di~~~~~~--------------   63 (132)
T d2yzia1           4 KAPIKV--YMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND--DG--NVVGFFTKSDIIRRVIV--------------   63 (132)
T ss_dssp             TSBGGG--TCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT--TS--CEEEEEEHHHHHHHTTT--------------
T ss_pred             CCcHHH--HcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecc--cc--eeeeeeeHHHHHHHHhh--------------
Confidence            346776  699999999999999999999999 9999999998  88  99999999999865300              


Q ss_pred             hhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCC
Q 013939          289 VMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKIT  368 (433)
Q Consensus       289 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~  368 (433)
                            .+.+.              .               ..+                 +     ..|.+++++|+++
T Consensus        64 ------~~~~~--------------~---------------~~v-----------------~-----~im~~~~~~v~~~   86 (132)
T d2yzia1          64 ------PGLPY--------------D---------------IPV-----------------E-----RIMTRNLITANVN   86 (132)
T ss_dssp             ------TCCCT--------------T---------------SBG-----------------G-----GTCBCSCCEEETT
T ss_pred             ------ccCcc--------------c---------------eeE-----------------e-----ecccccccccCcc
Confidence                  00000              0               001                 0     2367899999999


Q ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          369 SSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       369 ~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      +++.+++.+|.+++++++||+|+   |+++|+||.+||++++.++
T Consensus        87 ~~~~~~~~~m~~~~~~~l~V~~~---~~~vGivt~~Dil~a~~~~  128 (132)
T d2yzia1          87 TPLGEVLRKMAEHRIKHILIEEE---GKIVGIFTLSDLLEASRRR  128 (132)
T ss_dssp             SBHHHHHHHHHHHTCSEEEEEET---TEEEEEEEHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHcCCCEEEEEEC---CEEEEEEEHHHHHHHHHHH
Confidence            99999999999999999998765   8999999999999998764

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.74  E-value=4.6e-18  Score=144.87  Aligned_cols=106  Identities=21%  Similarity=0.228  Sum_probs=91.8

Q ss_pred             hhHhhhhcCC-CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcc
Q 013939            8 HVVGDLTVGK-PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLE   86 (433)
Q Consensus         8 ~~v~DL~~~k-~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~   86 (433)
                      .+|+|+|..| ++++++++++|+.+|+++|.+++++++||++.              ++++|++|..||++.+.....  
T Consensus         2 ~tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~--------------~~~vGiit~~Di~~~~~~~~~--   65 (127)
T d2rc3a1           2 KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD--------------EKLVGILTERDFSRKSYLLDK--   65 (127)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEET--------------TEEEEEEEHHHHHHHGGGSSS--
T ss_pred             ccHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEEC--------------CeEEEEEEccchhhhhhhhcc--
Confidence            3799999765 68999999999999999999999999999983              799999999999987653211  


Q ss_pred             hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           87 DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        87 ~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                         ...+.+|+++|.++   ++++++++++.+|+++|. ++++++||.++
T Consensus        66 ---~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  109 (127)
T d2rc3a1          66 ---PVKDTQVKEIMTRQ---VAYVDLNNTNEDCMALITEMRVRHLPVLDD  109 (127)
T ss_dssp             ---CGGGSBGGGTSBCS---CCCBCTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             ---cccceeEeeeccce---eEEeccCccHHHHHHHHHHCCCcEEEEEEC
Confidence               12357899999975   999999999999999999 79999999864

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.74  E-value=3.2e-18  Score=147.25  Aligned_cols=129  Identities=13%  Similarity=0.139  Sum_probs=103.2

Q ss_pred             CcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhh
Q 013939          212 SISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVM  290 (433)
Q Consensus       212 tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~  290 (433)
                      +|++  +|+++++++.+++|+.+|+++|.+ +++++||+|+  ++  +++|++|.+|++++.....    ..   .+...
T Consensus         3 ~V~~--iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~--~~--~~~g~i~~~di~~~~~~~~----~~---~~~~~   69 (141)
T d3ddja1           3 PVKV--FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD--DN--KVVGIVTVVNAIKQLAKAV----DK---LDPDY   69 (141)
T ss_dssp             BHHH--HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT--TS--CEEEEEEHHHHHHHHHHHH----HH---TCTHH
T ss_pred             eeHH--hCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccc--cC--ccccccccccchhhhhccc----cc---ccccc
Confidence            4555  699999999999999999999999 9999999998  78  9999999999987641100    00   00000


Q ss_pred             ccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCC
Q 013939          291 GVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSS  370 (433)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~s  370 (433)
                      +                     .+               ..+                 +     ..|+++++++.++++
T Consensus        70 ~---------------------~~---------------~~v-----------------~-----~im~~~~~~v~~~~~   91 (141)
T d3ddja1          70 F---------------------YG---------------KVV-----------------K-----DVMVTNLVTIDELAS   91 (141)
T ss_dssp             H---------------------HT---------------CBH-----------------H-----HHSBCCCCBCCTTSB
T ss_pred             c---------------------cC---------------CCH-----------------H-----HHhCcccccccccch
Confidence            0                     00               000                 0     236789999999999


Q ss_pred             HHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          371 LAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       371 L~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      +.+++.+|.+++++++||||++  |+++|+||.+||++++.+.
T Consensus        92 ~~~~~~~m~~~~~~~l~Vvd~~--~~~iGiIt~~Dil~~l~~~  132 (141)
T d3ddja1          92 VNRAAAEMIVKRIGSLLILNKD--NTIRGIITERDLLIALHHI  132 (141)
T ss_dssp             HHHHHHHHHHHTCSEEEEECTT--SCEEEEEEHHHHHHHHHHH
T ss_pred             hhHHHHHHHHcCCCEEEEEccC--CEEEEEEEHHHHHHHHHHH
Confidence            9999999999999999999998  9999999999999999763

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.74  E-value=1.5e-18  Score=155.20  Aligned_cols=147  Identities=8%  Similarity=0.021  Sum_probs=102.0

Q ss_pred             CCCcccccCcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccch
Q 013939          210 LSSISSLGVIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAG  286 (433)
Q Consensus       210 ~~tV~~L~im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~  286 (433)
                      .+++.+  +|.  .+++++.++.|+.+|++.|.+ +++++||+|++ .+  +++|+||.+|++++...  .......+..
T Consensus        19 ~~~~~d--vm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~-~~--~~vGiis~~Di~~~l~~--~~~~~~~~~~   91 (179)
T d2ooxe1          19 SRTSYD--VLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE-AN--KFAGLLTMADFVNVIKY--YYQSSSFPEA   91 (179)
T ss_dssp             HSBHHH--HSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETT-TT--EEEEEECHHHHHHHHHH--HHHHCSCGGG
T ss_pred             CCEeee--eCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCC-CC--eeEEEEeechHHHHHHh--ccccccchhh
Confidence            345665  464  579999999999999999999 99999999961 46  99999999999876411  0000000000


Q ss_pred             hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939          287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK  366 (433)
Q Consensus       287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~  366 (433)
                      ....           ..     ........          .  ...                      ...+..++++|.
T Consensus        92 ~~~~-----------~~-----~~~~~~~~----------~--~~~----------------------~~~~~~~~i~v~  121 (179)
T d2ooxe1          92 IAEI-----------DK-----FRLLGLRE----------V--ERK----------------------IGAIPPETIYVH  121 (179)
T ss_dssp             GGGG-----------GG-----SBHHHHHH----------H--HHH----------------------TTCSCSSCCCBC
T ss_pred             hhhh-----------hc-----cchhhhcc----------c--cee----------------------eeecccCceEEC
Confidence            0000           00     00000000          0  000                      023678999999


Q ss_pred             CCCCHHHHHHHHHHcCCCEEEEEeCCC---CCeEEEEEeHHHHHHHHHhC
Q 013939          367 ITSSLAAVMAQMLSHRATHVWVTEDES---DDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       367 p~~sL~~v~~~m~~~~vhrl~VVD~~~---~~~lvGIVs~~DIL~~i~~~  413 (433)
                      ++++|.+|+.+|.++++||+||+|+++   .++++||||++|||+.+...
T Consensus       122 ~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~  171 (179)
T d2ooxe1         122 PMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMN  171 (179)
T ss_dssp             TTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHh
Confidence            999999999999999999999999752   13799999999999999764

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.74  E-value=9.5e-20  Score=154.43  Aligned_cols=116  Identities=9%  Similarity=0.072  Sum_probs=62.2

Q ss_pred             cCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCC-CCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939          219 INPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPT-SEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV  296 (433)
Q Consensus       219 m~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~-~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~  296 (433)
                      |.++++|+.+++++.+|+++|.+ +++++||||++ .+|  +++|+||.+|++.....                      
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~--~lvGivT~~Di~~~~~~----------------------   57 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGS--RLVGIISSRDIDFLKEE----------------------   57 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTT--CCC------------------------------------
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCC--eEeeeeeeeeeeehhcc----------------------
Confidence            45667899999999999999999 99999999852 145  99999999998643200                      


Q ss_pred             CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939          297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA  376 (433)
Q Consensus       297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~  376 (433)
                                       +.+.             ..  .   +         .      +.+..++++|++++++.+|++
T Consensus        58 -----------------~~~~-------------~~--~---~---------~------~~~~~~~~~v~~~~~~~~a~~   87 (120)
T d1jr1a4          58 -----------------EHDR-------------FL--E---E---------I------MTKREDLVVAPAGITLKEANE   87 (120)
T ss_dssp             ----------------------------------------------------C------CSBTTTSCCEETTCCHHHHHH
T ss_pred             -----------------ccCc-------------ee--E---E---------E------EeeccCceEECCCCCHHHHHH
Confidence                             0000             00  0   0         0      224668999999999999999


Q ss_pred             HHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHH
Q 013939          377 QMLSHRATHVWVTEDESDDVLVGVVGYADILVAV  410 (433)
Q Consensus       377 ~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i  410 (433)
                      +|.+++++++||||++  |+++||||++||+++.
T Consensus        88 ~m~~~~i~~lpVVd~~--~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          88 ILQRSKKGKLPIVNEN--DELVAIIARTDLKKNR  119 (120)
T ss_dssp             HTCSCC---CEEEETT--TEEEEEECHHHHHHHH
T ss_pred             HHHHcCccEEEEEcCC--CEEEEEEEHHHhhhcc
Confidence            9999999999999998  9999999999999874

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.74  E-value=6.4e-18  Score=147.37  Aligned_cols=148  Identities=13%  Similarity=0.093  Sum_probs=102.8

Q ss_pred             CCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhh
Q 013939          211 SSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFV  289 (433)
Q Consensus       211 ~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~  289 (433)
                      -+|++  +|+++++++++++++.+|+++|.+ +++++||||+++++  .++|++|..|+++...... . ...       
T Consensus        11 ~~V~d--iM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~--~lvg~is~~dl~~~l~~~~-~-~~~-------   77 (160)
T d2d4za3          11 IQVGD--IMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTN--TLLGSIDRTEVEGLLQRRI-S-AYR-------   77 (160)
T ss_dssp             CBTTS--SSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTC--BEEEEEEHHHHHHHHHHHH-H-TTS-------
T ss_pred             eEHHH--hcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccc--cccccchHHHHHHHHhhcc-c-ccc-------
Confidence            35555  799999999999999999999999 99999999974356  9999999999987641100 0 000       


Q ss_pred             hccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCC
Q 013939          290 MGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITS  369 (433)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~  369 (433)
                           .........  ... ........            ......            .+     ...|..+++||+|++
T Consensus        78 -----~~~~~~~~~--~~~-~~~~~~~~------------~~~~~~------------~~-----~~~~~~~~~tv~~~~  120 (160)
T d2d4za3          78 -----RQPFEEMLT--LEE-IYRWEQRE------------KNVVVN------------FE-----TCRIDQSPFQLVEGT  120 (160)
T ss_dssp             -----SSCCCSCCB--HHH-HHHHHHHH------------TTCBCC------------TT-----SSCEECCSCCBCTTC
T ss_pred             -----ccchhhccc--cch-hhhhhhhh------------cccccc------------ee-----eecccCCCEEEcCCC
Confidence                 000000000  000 00000000            000000            01     134788999999999


Q ss_pred             CHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHH
Q 013939          370 SLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVT  411 (433)
Q Consensus       370 sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~  411 (433)
                      +|.+|+..|.++++||+||+|+   |+++||||++||++++.
T Consensus       121 ~l~~~~~~m~~~~v~~l~V~d~---g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3         121 SLQKTHTLFSLLGLDRAYVTSM---GKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             BHHHHHHHHHHHTCSEEEEEET---TEEEEEEEHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCeEEEEEEC---CEEEEEEEHHHHHHHhC
Confidence            9999999999999999999985   89999999999999985

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.74  E-value=2.9e-18  Score=146.57  Aligned_cols=113  Identities=19%  Similarity=0.223  Sum_probs=96.9

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-C-----CCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhc
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-D-----PSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMG  291 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~-----isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~  291 (433)
                      +|+++++++++++++.+|++.|.+ +     +..+||||+  +|  +++|+++.+|+.....        .         
T Consensus         6 iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~--~~--~l~G~v~~~~l~~~~~--------~---------   64 (127)
T d2ouxa2           6 IMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ--EN--HLVGVISLRDLIVNDD--------D---------   64 (127)
T ss_dssp             HCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT--TC--BEEEEEEHHHHTTSCT--------T---------
T ss_pred             hCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEec--CC--eEEEEEEeeccccccc--------c---------
Confidence            799999999999999999999966 3     688999998  88  9999999999864320        0         


Q ss_pred             cccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCH
Q 013939          292 VEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSL  371 (433)
Q Consensus       292 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL  371 (433)
                                           .                 .+                 +     ..|++++++|+|++++
T Consensus        65 ---------------------~-----------------~v-----------------~-----~im~~~~~~v~~~~~l   84 (127)
T d2ouxa2          65 ---------------------T-----------------LI-----------------A-----DILNERVISVHVGDDQ   84 (127)
T ss_dssp             ---------------------S-----------------BH-----------------H-----HHSBSCCCCEETTSBH
T ss_pred             ---------------------E-----------------Eh-----------------h-----hhccCCCccCCCCCCH
Confidence                                 0                 00                 0     2368899999999999


Q ss_pred             HHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939          372 AAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ  413 (433)
Q Consensus       372 ~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~  413 (433)
                      .+|+.+|.+++++++||||++  |+|+||||..||++++..+
T Consensus        85 ~~a~~~m~~~~~~~lPVVD~~--g~lvGiIt~~Dil~~i~ee  124 (127)
T d2ouxa2          85 EDVAQTIRDYDFLAVPVTDYD--DHLLGIVTVDDIIDVIDDE  124 (127)
T ss_dssp             HHHHHHHHHHTCSEEEEECTT--CBEEEEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCEEEEEEeCC--CEEEEEEEHHHHHHHHHHH
Confidence            999999999999999999988  9999999999999988654

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.74  E-value=5.5e-18  Score=144.90  Aligned_cols=130  Identities=17%  Similarity=0.069  Sum_probs=99.9

Q ss_pred             CcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhh
Q 013939          212 SISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVM  290 (433)
Q Consensus       212 tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~  290 (433)
                      +|++  +|.++++++.+++++.+|+++|.+ +++++||+|+      +++|++|..|+++.......             
T Consensus         2 ~V~~--lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~------~lvg~~~~~~~~~~~~~~~~-------------   60 (135)
T d3ddja2           2 NIET--LMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE------KIEGLLTTRDLLSTVESYCK-------------   60 (135)
T ss_dssp             SGGG--TCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS------SEEEEEEHHHHHGGGTTCC--------------
T ss_pred             EeeE--EeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec------ceeceeeccchhhhhccccc-------------
Confidence            3555  689999999999999999999999 9999999985      78999999999876410000             


Q ss_pred             ccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCC
Q 013939          291 GVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSS  370 (433)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~s  370 (433)
                             ..  ..     ......            +....+                 +     ..|+.++++|+++++
T Consensus        61 -------~~--~~-----~~~~~~------------~~~~~v-----------------~-----~im~~~~~~v~~~~~   92 (135)
T d3ddja2          61 -------DS--CS-----QGDLYH------------ISTTPI-----------------I-----DYMTPNPVTVYNTSD   92 (135)
T ss_dssp             -----------CC-----HHHHHH------------HHTSBG-----------------G-----GTSEESCCCEETTSC
T ss_pred             -------cc--hh-----hhhccc------------cccCCH-----------------H-----HHhCCccceEEeccc
Confidence                   00  00     000000            000011                 0     336889999999999


Q ss_pred             HHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          371 LAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       371 L~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      +.+|+.+|.+++++++||+|++  |+++||||.+||++++..
T Consensus        93 l~~a~~~m~~~~i~~lpVvd~~--g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          93 EFTAINIMVTRNFGSLPVVDIN--DKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             HHHHHHHHHHHTCSEEEEECTT--SCEEEEEEHHHHGGGGGG
T ss_pred             cchhhhhhhhcceeEEEEEeCC--CEEEEEEEHHHHHHHHHH
Confidence            9999999999999999999998  999999999999998865

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.73  E-value=8.6e-18  Score=145.17  Aligned_cols=127  Identities=18%  Similarity=0.239  Sum_probs=105.8

Q ss_pred             hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC--cc
Q 013939            9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC--LE   86 (433)
Q Consensus         9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~--l~   86 (433)
                      +|+|+|.  ++++++++++|+.+|+++|.+++++++||+|.+             ++++|+||..|++.++.....  ..
T Consensus         3 ~v~diM~--~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~-------------~~~~Giit~~dl~~~~~~~~~~~~~   67 (139)
T d2o16a3           3 KVEDMMT--RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-------------KKLLGIVSQRDLLAAQESSLQRSAQ   67 (139)
T ss_dssp             BGGGTSE--ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-------------CBEEEEEEHHHHHHHHHHHCC----
T ss_pred             EHHHhCc--CCCeEECCcCCHHHHHHHHHHcCCCeeeeeccc-------------ccccccccHHHHHHHHHhhhhhhhc
Confidence            5889986  678999999999999999999999999999864             799999999999998764211  11


Q ss_pred             hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccc
Q 013939           87 DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSN  165 (433)
Q Consensus        87 ~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~  165 (433)
                      ......+.||+++|.++   ++++++++++.+|+++|. ++++++||.+++                             
T Consensus        68 ~~~~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------------------------  115 (139)
T d2o16a3          68 GDSLAFETPLFEVMHTD---VTSVAPQAGLKESAIYMQKHKIGCLPVVAKD-----------------------------  115 (139)
T ss_dssp             -----CCCBHHHHSCSC---EEEBCTTSBHHHHHHHHHHTTCSCEEEEETT-----------------------------
T ss_pred             ccccccccchhHhhccc---cccccccchHHHHHHHHHHcCceEEEEEECC-----------------------------
Confidence            11223568999999865   999999999999999999 889999998642                             


Q ss_pred             ccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          166 NLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                        +++|+||.+||++++.+
T Consensus       116 ------------------~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3         116 ------------------VLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             ------------------EEEEEECHHHHHHHHHH
T ss_pred             ------------------EEEEEEEHHHHHHHHHH
Confidence                              35899999999999975

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=4e-18  Score=149.55  Aligned_cols=141  Identities=9%  Similarity=0.045  Sum_probs=101.9

Q ss_pred             CCCcccccCcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccch
Q 013939          210 LSSISSLGVIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAG  286 (433)
Q Consensus       210 ~~tV~~L~im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~  286 (433)
                      .++++|+  |.  .+++++.+++++.+|+++|.+ +++++|||++. ++  +++|+||.+|+..........  ......
T Consensus        12 ~~t~~Dl--m~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~-~~--~~vG~is~~Dl~~~~~~~~~~--~~~~~~   84 (159)
T d2v8qe2          12 SHRCYDL--IPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK-KQ--SFVGMLTITDFINILHRYYKS--ALVQIY   84 (159)
T ss_dssp             HSBGGGG--SCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT-TT--EEEEEEEHHHHHHHHHHHHHH--HTTTCC
T ss_pred             CCEEEeE--CCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECC-CC--cEEEEEEHHHHHHHHHhcccc--ccchhh
Confidence            3567764  64  469999999999999999999 99999999862 46  999999999998765221111  100000


Q ss_pred             hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939          287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK  366 (433)
Q Consensus       287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~  366 (433)
                      .+.             .    ......                 ...                    ....+..++++|+
T Consensus        85 ~~~-------------~----~~~~~~-----------------~~~--------------------~~~~~~~~~~~v~  110 (159)
T d2v8qe2          85 ELE-------------E----HKIETW-----------------REV--------------------YLQDSFKPLVCIS  110 (159)
T ss_dssp             CGG-------------G----CBHHHH-----------------HHH--------------------HSSSSCCCCCCBC
T ss_pred             hhh-------------h----hhcccc-----------------cce--------------------eeeeeccceEEEC
Confidence            000             0    000000                 000                    0023678999999


Q ss_pred             CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      |+++|.+|+.+|.++++||+||+|++ +|+++||||.+|||+++..
T Consensus       111 ~~~~l~~v~~~m~~~~~~~v~Vvd~~-~g~~~GivT~~dilk~l~~  155 (159)
T d2v8qe2         111 PNASLFDAVSSLIRNKIHRLPVIDPE-SGNTLYILTHKRILKFLKL  155 (159)
T ss_dssp             TTSBHHHHHHHHHHHTCSCEEEECTT-TCCEEEEECHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhCCeEEEEEECC-CCeEEEEEeHHHHHHHHHH
Confidence            99999999999999999999999864 3899999999999999864

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.72  E-value=2.6e-18  Score=150.26  Aligned_cols=114  Identities=17%  Similarity=0.224  Sum_probs=91.8

Q ss_pred             ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC-
Q 013939            5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD-   83 (433)
Q Consensus         5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~-   83 (433)
                      |...++.++|.  ++++++++++++.+|+++|.+++++++||+|+.             ++++|+||..|++.++.... 
T Consensus         1 ~~~~~v~~~m~--r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~-------------~~lvG~it~~Dl~~~~~~~~~   65 (156)
T d2yzqa1           1 YKGVEIEPYYQ--RYVSIVWEGTPLKAALKALLLSNSMALPVVDSE-------------GNLVGIVDETDLLRDSEIVRI   65 (156)
T ss_dssp             GGGCBSTTTSB--SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTT-------------SCEEEEEEGGGGGGCGGGCC-
T ss_pred             CCCCCHHHHhc--CCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCC-------------CCceeEEeeeechhhhccccc
Confidence            45677888885  789999999999999999999999999999864             79999999999987553210 


Q ss_pred             --C-----------c-ch---------HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939           84 --C-----------L-ED---------QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV  136 (433)
Q Consensus        84 --~-----------l-~~---------~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~  136 (433)
                        .           . ..         .....+.+|.++|+.+   ++++.++++|.+|++.|. +|++++||++++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~---~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~  139 (156)
T d2yzqa1          66 MKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRD---VIVATPHMTVHEVALKMAKYSIEQLPVIRGE  139 (156)
T ss_dssp             -------------------------------CCCBGGGTCBSS---CCCBCTTSBHHHHHHHHHHHTCSEEEEEETT
T ss_pred             ccccccccchhhhhhhhhhhhhhHHHhhhcccCCEeehhcccC---ceEECcccccHHHHHHHHHcCeeEEEEEeCC
Confidence              0           0 00         0112357899999865   999999999999999999 899999998754

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.71  E-value=1.7e-17  Score=142.59  Aligned_cols=128  Identities=20%  Similarity=0.205  Sum_probs=108.3

Q ss_pred             hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939            9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ   88 (433)
Q Consensus         9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~   88 (433)
                      .|+++|.  ++++++++++|+.+|+++|.+++++++||+|.+             ++++|+++..|+++++.........
T Consensus         3 ~V~~iMt--~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~-------------~~~~g~i~~~di~~~~~~~~~~~~~   67 (141)
T d3ddja1           3 PVKVFMS--TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-------------NKVVGIVTVVNAIKQLAKAVDKLDP   67 (141)
T ss_dssp             BHHHHSB--CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-------------SCEEEEEEHHHHHHHHHHHHHHTCT
T ss_pred             eeHHhCc--CCCeEEcCcCcHHHHHHHHHHcCCCeeeccccc-------------Cccccccccccchhhhhcccccccc
Confidence            4889985  679999999999999999999999999999974             7899999999999987642111112


Q ss_pred             HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccccc
Q 013939           89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNL  167 (433)
Q Consensus        89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  167 (433)
                      ....+.+|+++|..+   ++++++++++.+|+++|. ++++++||+++++                              
T Consensus        68 ~~~~~~~v~~im~~~---~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~------------------------------  114 (141)
T d3ddja1          68 DYFYGKVVKDVMVTN---LVTIDELASVNRAAAEMIVKRIGSLLILNKDN------------------------------  114 (141)
T ss_dssp             HHHHTCBHHHHSBCC---CCBCCTTSBHHHHHHHHHHHTCSEEEEECTTS------------------------------
T ss_pred             ccccCCCHHHHhCcc---cccccccchhhHHHHHHHHcCCCEEEEEccCC------------------------------
Confidence            334578999999965   999999999999999999 8999999986532                              


Q ss_pred             ccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          168 IANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                      +++|+||.+||++.+.+
T Consensus       115 ----------------~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1         115 ----------------TIRGIITERDLLIALHH  131 (141)
T ss_dssp             ----------------CEEEEEEHHHHHHHHHH
T ss_pred             ----------------EEEEEEEHHHHHHHHHH
Confidence                            56899999999999865

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.71  E-value=3.9e-17  Score=143.04  Aligned_cols=127  Identities=19%  Similarity=0.324  Sum_probs=106.0

Q ss_pred             HhhhhcCC-CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939           10 VGDLTVGK-PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ   88 (433)
Q Consensus        10 v~DL~~~k-~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~   88 (433)
                      ++++..++ ++++++++++|+.+|+++|.+++++++||+|.+             ++++|++|..||++++....     
T Consensus         3 l~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-------------~~~vG~it~~Dl~~~~~~~~-----   64 (153)
T d2ooxe2           3 LNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE-------------GTLLNVYESVDVMHLIQDGD-----   64 (153)
T ss_dssp             GGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGG-------------GBEEEEEEHHHHHHHHGGGC-----
T ss_pred             HHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeeccc-------------ceEEEEEEeeeeeehhcccc-----
Confidence            56777654 689999999999999999999999999999964             79999999999999886531     


Q ss_pred             HhhcCCcchhccccCC---CccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccc
Q 013939           89 DKAMKTPVSQVIVPNN---SLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSS  164 (433)
Q Consensus        89 ~~~l~~pV~~Im~~~~---~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~  164 (433)
                      ......++.++|....   .+++++.++++|.+|++.|. ++++++||+++++                           
T Consensus        65 ~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~---------------------------  117 (153)
T d2ooxe2          65 YSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENL---------------------------  117 (153)
T ss_dssp             GGGGGSBHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTC---------------------------
T ss_pred             ccccccchhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCC---------------------------
Confidence            1223567888875432   46889999999999999999 8999999986532                           


Q ss_pred             cccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          165 NNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                         +++|+||++|+++|+..
T Consensus       118 -------------------~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2         118 -------------------KLEGILSLADILNYIIY  134 (153)
T ss_dssp             -------------------BEEEEEEHHHHHHHHHS
T ss_pred             -------------------EEEEEEEHHHHHHHHHc
Confidence                               56899999999999964

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.71  E-value=4.2e-17  Score=138.64  Aligned_cols=123  Identities=18%  Similarity=0.242  Sum_probs=106.8

Q ss_pred             cchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCc
Q 013939            6 IYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCL   85 (433)
Q Consensus         6 ~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l   85 (433)
                      ....|+|+|.  ++++++++++|+.+|+++|.+++++++||+|.              ++++|++|..|+++++.+... 
T Consensus         2 ~~~~V~d~m~--~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~--------------~~~~Givt~~dl~~~~~~~~~-   64 (127)
T d2ef7a1           2 EEEIVKEYMK--TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG--------------NKPVGIITERDIVKAIGKGKS-   64 (127)
T ss_dssp             CCCBGGGTSB--CSCCEEETTCBHHHHHHHHHHHTCSEEEEEET--------------TEEEEEEEHHHHHHHHHTTCC-
T ss_pred             CccCHHHhCC--CCCeEECCcCcHHHHHHHHHHcCCceEEeecc--------------cchhhhcchhHHHHHHHhhcc-
Confidence            3457899985  68999999999999999999999999999984              689999999999998875422 


Q ss_pred             chHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccc
Q 013939           86 EDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSS  164 (433)
Q Consensus        86 ~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~  164 (433)
                            .+++++++|.++   ++++++++++.+|+++|. ++++++||+++.                            
T Consensus        65 ------~~~~v~~~~~~~---~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~----------------------------  107 (127)
T d2ef7a1          65 ------LETKAEEFMTAS---LITIREDSPITGALALMRQFNIRHLPVVDDK----------------------------  107 (127)
T ss_dssp             ------TTCBGGGTSEEC---CCCEETTSBHHHHHHHHHHHTCSEEEEECTT----------------------------
T ss_pred             ------ccchhhhhhhhh---ccccccccchhHHHHHHHHcCceEEEEEeCC----------------------------
Confidence                  347899999865   899999999999999999 789999998643                            


Q ss_pred             cccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          165 NNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                        ++++|+||..|+++.+.+
T Consensus       108 ------------------~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1         108 ------------------GNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             ------------------SCEEEEEEHHHHHHHHHH
T ss_pred             ------------------CeEEEEEEHHHHHHHHHh
Confidence                              256899999999999864

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.71  E-value=1.6e-17  Score=140.14  Aligned_cols=114  Identities=15%  Similarity=0.173  Sum_probs=94.6

Q ss_pred             CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939          218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV  296 (433)
Q Consensus       218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~  296 (433)
                      +|+++++++.+++|+.+|++.|.+ +++.+||++   +|  +++|+||.+||++....       .            . 
T Consensus         5 iM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~---~~--~~~Gvit~~Di~~~l~~-------~------------~-   59 (120)
T d1pbja3           5 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK---EG--VRVGIVTTWDVLEAIAE-------G------------D-   59 (120)
T ss_dssp             HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE---TT--EEEEEEEHHHHHHHHHH-------T------------C-
T ss_pred             hCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEe---CC--cEEEEEEeeeccccccc-------c------------c-
Confidence            699999999999999999999999 999999887   58  99999999999875310       0            0 


Q ss_pred             CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939          297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA  376 (433)
Q Consensus       297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~  376 (433)
                      .+   .+                          ..+                 +     ..|..++.++++++++.+|+.
T Consensus        60 ~~---~~--------------------------~~v-----------------~-----~~m~~~~~~v~~~~~l~~a~~   88 (120)
T d1pbja3          60 DL---AE--------------------------VKV-----------------W-----EVMERDLVTISPRATIKEAAE   88 (120)
T ss_dssp             CT---TT--------------------------SBH-----------------H-----HHCBCGGGEECTTSCHHHHHH
T ss_pred             cc---cc--------------------------eeE-----------------e-----eecccccccccchhHHHHHHH
Confidence            00   00                          000                 0     235789999999999999999


Q ss_pred             HHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHH
Q 013939          377 QMLSHRATHVWVTEDESDDVLVGVVGYADILVAV  410 (433)
Q Consensus       377 ~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i  410 (433)
                      +|.+++++++||+|+   |+++|+||++||+++.
T Consensus        89 ~m~~~~~~~l~V~~~---~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          89 KMVKNVVWRLLVEED---DEIIGVISATDILRAK  119 (120)
T ss_dssp             HHHHHTCSEEEEEET---TEEEEEEEHHHHHHHH
T ss_pred             HHHHcCCeEEEEEEC---CEEEEEEEHHHHHhcC
Confidence            999999999999875   7999999999999985

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=3.1e-17  Score=141.47  Aligned_cols=131  Identities=13%  Similarity=0.318  Sum_probs=101.5

Q ss_pred             ccchhHhhh-hcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            5 FIYHVVGDL-TVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         5 ~~~~~v~DL-~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      |...+++|| +....+++++.+++|+.+|+++|.+++++++||+|..             ++++|+||..|+++++....
T Consensus         3 ~~~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~-------------~~~vG~it~~Di~~~~~~~~   69 (140)
T d2nyca1           3 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-------------GYLINVYEAYDVLGLIKGGI   69 (140)
T ss_dssp             GGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-------------CBEEEEEEHHHHHHHHHTC-
T ss_pred             cccCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-------------CeEcceehhhHHHHHHhhcc
Confidence            455678888 4456889999999999999999999999999999964             78999999999999987531


Q ss_pred             CcchHHhhcCCcchhccccC---CCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccc
Q 013939           84 CLEDQDKAMKTPVSQVIVPN---NSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDA  159 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~---~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~  159 (433)
                      .     ......+...|...   ..+++++.+++++.+|++.|. +++|++||+++.+                      
T Consensus        70 ~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~----------------------  122 (140)
T d2nyca1          70 Y-----NDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG----------------------  122 (140)
T ss_dssp             --------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTS----------------------
T ss_pred             c-----cccccchhhhhhhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCC----------------------
Confidence            1     11222333333211   145889999999999999999 7999999986532                      


Q ss_pred             cCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHH
Q 013939          160 SNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLI  199 (433)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~  199 (433)
                                              +++|+||+.||++|+.
T Consensus       123 ------------------------~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1         123 ------------------------RLVGVLTLSDILKYIL  138 (140)
T ss_dssp             ------------------------BEEEEEEHHHHHHHHH
T ss_pred             ------------------------eEEEEEEHHHHHHHHh
Confidence                                    5689999999999985

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.71  E-value=1.8e-17  Score=141.06  Aligned_cols=121  Identities=14%  Similarity=0.143  Sum_probs=98.0

Q ss_pred             cccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhc
Q 013939          213 ISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMG  291 (433)
Q Consensus       213 V~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~  291 (433)
                      |++  +|+++++++++++++.+|+++|.+ +++++||++.++++  +++|++|..|+++....                 
T Consensus         3 V~d--im~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~--~~iGi~~~~dl~~~~~~-----------------   61 (131)
T d2riha1           3 TSE--LLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPK--RPVAVVSERDILRAVAQ-----------------   61 (131)
T ss_dssp             GGG--GCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEE--EEEEEEEHHHHHHHHHT-----------------
T ss_pred             HHH--hccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCC--EEEEEEeeecccccccc-----------------
Confidence            454  799999999999999999999999 99999999541146  99999999999865300                 


Q ss_pred             cccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCH
Q 013939          292 VEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSL  371 (433)
Q Consensus       292 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL  371 (433)
                         .                 ....              ..               .       ..+..++++|.+++++
T Consensus        62 ---~-----------------~~~~--------------~~---------------~-------~~~~~~~~~v~~~~~~   85 (131)
T d2riha1          62 ---R-----------------LDLD--------------GP---------------A-------MPIANSPITVLDTDPV   85 (131)
T ss_dssp             ---T-----------------CCTT--------------SB---------------S-------GGGCBCCCEEETTSBH
T ss_pred             ---c-----------------cccc--------------cc---------------c-------ccccccceeEeeecch
Confidence               0                 0000              00               0       1245678899999999


Q ss_pred             HHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          372 AAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       372 ~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      .+++++|.+++++++||||++  |+++||||..||++++..
T Consensus        86 ~~a~~~m~~~~i~~lpVvd~~--g~l~Giit~~Dll~~~~~  124 (131)
T d2riha1          86 HVAAEKMRRHNIRHVVVVNKN--GELVGVLSIRDLCFERAI  124 (131)
T ss_dssp             HHHHHHHHHHTCSEEEEECTT--SCEEEEEEHHHHHSCHHH
T ss_pred             HHHHHHHHHCCeEEEEEEcCC--CeEEEEEEHHHHHHHHHH
Confidence            999999999999999999998  999999999999987653

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.70  E-value=4.5e-17  Score=139.49  Aligned_cols=122  Identities=16%  Similarity=0.196  Sum_probs=105.7

Q ss_pred             hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch
Q 013939            8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED   87 (433)
Q Consensus         8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~   87 (433)
                      .+|+|+|.  ++++++++++|+.+|+++|.+++++++||+|.+             ++++|+||..||++++...+.   
T Consensus         5 ~pV~~im~--~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~-------------~~~~Giit~~di~~~~~~~~~---   66 (132)
T d2yzia1           5 APIKVYMT--KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-------------GNVVGFFTKSDIIRRVIVPGL---   66 (132)
T ss_dssp             SBGGGTCB--CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-------------SCEEEEEEHHHHHHHTTTTCC---
T ss_pred             CcHHHHcC--CCCeEECCcCcHHHHHHHHHHcCCcEEEEeccc-------------ceeeeeeeHHHHHHHHhhccC---
Confidence            36899985  679999999999999999999999999999974             799999999999998765422   


Q ss_pred             HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccc
Q 013939           88 QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNN  166 (433)
Q Consensus        88 ~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~  166 (433)
                         ..+.||+++|.++   ++++++++++.+|++.|. ++++++||.+++                              
T Consensus        67 ---~~~~~v~~im~~~---~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~~------------------------------  110 (132)
T d2yzia1          67 ---PYDIPVERIMTRN---LITANVNTPLGEVLRKMAEHRIKHILIEEEG------------------------------  110 (132)
T ss_dssp             ---CTTSBGGGTCBCS---CCEEETTSBHHHHHHHHHHHTCSEEEEEETT------------------------------
T ss_pred             ---ccceeEeeccccc---ccccCcchHHHHHHHHHHHcCCCEEEEEECC------------------------------
Confidence               2358999999865   999999999999999999 899999986432                              


Q ss_pred             cccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          167 LIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                       +++|+||+.|+++.+.+
T Consensus       111 -----------------~~vGivt~~Dil~a~~~  127 (132)
T d2yzia1         111 -----------------KIVGIFTLSDLLEASRR  127 (132)
T ss_dssp             -----------------EEEEEEEHHHHHHHHHC
T ss_pred             -----------------EEEEEEEHHHHHHHHHH
Confidence                             45899999999998864

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=2.1e-17  Score=143.04  Aligned_cols=133  Identities=19%  Similarity=0.242  Sum_probs=107.6

Q ss_pred             cccchhHhhhhcCC-CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcC
Q 013939            4 VFIYHVVGDLTVGK-PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKS   82 (433)
Q Consensus         4 ~~~~~~v~DL~~~k-~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~   82 (433)
                      .|...+++|+..+. ++++++++++|+.+|+++|.+++++++||+|.+             ++++|+||..|++.++...
T Consensus         5 ~f~~~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~-------------~~~~Gvit~~di~~~l~~~   71 (145)
T d2v8qe1           5 EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-------------GRVVDIYSKFDVINLAAEK   71 (145)
T ss_dssp             GGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-------------SBEEEEEEGGGTGGGGGSS
T ss_pred             HHhhCCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccC-------------CceEEEEEcchhhhhhhcc
Confidence            46778999998754 689999999999999999999999999999963             7999999999999888653


Q ss_pred             CCcchHHhhcCCcchhccccC---CCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhcccccccccc
Q 013939           83 DCLEDQDKAMKTPVSQVIVPN---NSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMD  158 (433)
Q Consensus        83 ~~l~~~~~~l~~pV~~Im~~~---~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~  158 (433)
                      ..     ...+.++.+.+...   ..+++++.+++++.+|++.|. +++|++||+++++                     
T Consensus        72 ~~-----~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g---------------------  125 (145)
T d2v8qe1          72 TY-----NNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHD---------------------  125 (145)
T ss_dssp             CC-----CCCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTS---------------------
T ss_pred             cc-----cchhhhhhhccchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCC---------------------
Confidence            11     11234444443321   135889999999999999999 8999999986432                     


Q ss_pred             ccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          159 ASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                               +++|+||++||++|+..
T Consensus       126 -------------------------~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1         126 -------------------------VVKGIVSLSDILQALVL  142 (145)
T ss_dssp             -------------------------BEEEEEEHHHHHHHHHS
T ss_pred             -------------------------EEEEEEEHHHHHHHHHh
Confidence                                     56899999999999964

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.69  E-value=2.6e-17  Score=142.84  Aligned_cols=123  Identities=19%  Similarity=0.219  Sum_probs=105.2

Q ss_pred             hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939            9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ   88 (433)
Q Consensus         9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~   88 (433)
                      +|+|+|.  ++++++++++|+.+|++.|.+++++++||+|.+             ++++|+||..|+++.+.....    
T Consensus         4 ~v~dim~--~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~-------------~~~~Giit~~di~~~~~~~~~----   64 (142)
T d1pvma4           4 RVEKIMN--SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-------------GNDVGLLSERSIIKRFIPRNK----   64 (142)
T ss_dssp             BGGGTSB--TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-------------SCEEEEEEHHHHHHHTGGGCC----
T ss_pred             EHHHhCC--CCCcEECCcCcHHHHHHHHHHCCCceEeeeccC-------------CcccceEEeechhhhhhhhcc----
Confidence            4889985  678999999999999999999999999999863             799999999999987654211    


Q ss_pred             HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccccc
Q 013939           89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNL  167 (433)
Q Consensus        89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  167 (433)
                       .....+|+++|.++   +++++++++|.+|+++|. ++++++||+++++                              
T Consensus        65 -~~~~~~v~~im~~~---~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g------------------------------  110 (142)
T d1pvma4          65 -KPDEVPIRLVMRKP---IPKVKSDYDVKDVAAYLSENGLERCAVVDDPG------------------------------  110 (142)
T ss_dssp             -CGGGSBGGGTSBSS---CCEEETTCBHHHHHHHHHHHTCSEEEEECTTC------------------------------
T ss_pred             -cccccccccccccc---cccccchhhHHHHHHHHHHcCCcEEEEEecCC------------------------------
Confidence             12347899999865   999999999999999999 8999999986532                              


Q ss_pred             ccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          168 IANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                      +++|+||..||++++.+
T Consensus       111 ----------------~l~Giit~~Dil~~l~~  127 (142)
T d1pvma4         111 ----------------RVVGIVTLTDLSRYLSR  127 (142)
T ss_dssp             ----------------CEEEEEEHHHHTTTSCH
T ss_pred             ----------------EEEEEEEHHHHHHHHhh
Confidence                            56899999999998754

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.69  E-value=9e-17  Score=135.39  Aligned_cols=102  Identities=26%  Similarity=0.351  Sum_probs=90.0

Q ss_pred             hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939            9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ   88 (433)
Q Consensus         9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~   88 (433)
                      +|+|+|.  ++++++++++|+.+|++.|.+++++.+||.+.              ++++|+||..||++++..+...   
T Consensus         1 kV~diM~--~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~--------------~~~~Gvit~~Di~~~l~~~~~~---   61 (120)
T d1pbja3           1 RVEDVMV--TDVDTIDITASLEDVLRNYVENAKGSSVVVKE--------------GVRVGIVTTWDVLEAIAEGDDL---   61 (120)
T ss_dssp             CHHHHCB--CSCCEEETTCBHHHHHHHHHHHCCCEEEEEET--------------TEEEEEEEHHHHHHHHHHTCCT---
T ss_pred             ChHHhCC--CCCeEECCcCcHHHHHHHHHHcCceEEEEEeC--------------CcEEEEEEeeeccccccccccc---
Confidence            4889986  68899999999999999999999999999873              7999999999999998765332   


Q ss_pred             HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                         .+.+|.++|.++   ++++++++++.+|++.|. ++++++||.++
T Consensus        62 ---~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~  103 (120)
T d1pbja3          62 ---AEVKVWEVMERD---LVTISPRATIKEAAEKMVKNVVWRLLVEED  103 (120)
T ss_dssp             ---TTSBHHHHCBCG---GGEECTTSCHHHHHHHHHHHTCSEEEEEET
T ss_pred             ---cceeEeeecccc---cccccchhHHHHHHHHHHHcCCeEEEEEEC
Confidence               247899999865   999999999999999999 79999999653

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=9.2e-17  Score=138.60  Aligned_cols=129  Identities=14%  Similarity=0.158  Sum_probs=103.0

Q ss_pred             hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcC--CCc
Q 013939            8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKS--DCL   85 (433)
Q Consensus         8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~--~~l   85 (433)
                      +.+.+++.  ++++++++++++.+|++.|.+++++++||+|.+             ++++|+||..||+.++...  ...
T Consensus         4 ~~v~~~m~--~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~-------------~~~vGiis~~Dl~~~~~~~~~~~~   68 (145)
T d1o50a3           4 KDVCKLIS--LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-------------NKLVGMIPVMHLLKVSGFHFFGFI   68 (145)
T ss_dssp             HHHTTSSC--CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-------------TEEEEEEEHHHHHHHHHHHHHCCC
T ss_pred             eEhHHhCC--CCCEEECCcCcHHHHHHHHHHcCCceEEEeccC-------------cceeeeeccchhhhhhhccccccc
Confidence            44566664  667999999999999999999999999999964             7999999999999987532  000


Q ss_pred             c-------hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccc
Q 013939           86 E-------DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNM  157 (433)
Q Consensus        86 ~-------~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~  157 (433)
                      .       ........+++++|..    ++++.+++++.+|+++|. ++++++||++++                     
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~---------------------  123 (145)
T d1o50a3          69 PKEELIRSSMKRLIAKNASEIMLD----PVYVHMDTPLEEALKLMIDNNIQEMPVVDEK---------------------  123 (145)
T ss_dssp             C-------CCCCCSSCBHHHHCBC----CCCBCTTSBHHHHHHHHHHHTCSEEEEECTT---------------------
T ss_pred             chhHHHHhhhhhccccCHHHHcCC----CEEEcCCCCHHHHHHHHHHcCceEEEEEeCC---------------------
Confidence            0       0111234677888864    688999999999999999 899999998643                     


Q ss_pred             cccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHc
Q 013939          158 DASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGC  201 (433)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~  201 (433)
                                               |+++|+||++||++++++.
T Consensus       124 -------------------------g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3         124 -------------------------GEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             -------------------------SCEEEEEEHHHHHHHHHHS
T ss_pred             -------------------------CeEEEEEEHHHHHHHHHhc
Confidence                                     2568999999999999863

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=1.5e-17  Score=142.27  Aligned_cols=128  Identities=14%  Similarity=0.144  Sum_probs=98.3

Q ss_pred             CCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhh
Q 013939          211 SSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFV  289 (433)
Q Consensus       211 ~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~  289 (433)
                      .+|+++=+...+|+++.+++++.+|+++|.+ +++++||+|+  +|  +++|+||.+|++++....            +.
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~--~~--~~vGiit~~di~~~~~~~------------~~   65 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP--SY--RLHGLIGTNMIMNSIFGL------------ER   65 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT--TC--BEEEEEEHHHHHHHHBCS------------SS
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeec--cc--ccccEEEcchhHHHhhcc------------cc
Confidence            4566642225679999999999999999999 9999999998  78  999999999998763100            00


Q ss_pred             hccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCC
Q 013939          290 MGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITS  369 (433)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~  369 (433)
                      .      ..+             ....             ..+                 +     +.|..++.+|++++
T Consensus        66 ~------~~~-------------~~~~-------------~~v-----------------~-----~~m~~~~~~v~~~~   91 (132)
T d1yava3          66 I------EFE-------------KLDQ-------------ITV-----------------E-----EVMLTDIPRLHIND   91 (132)
T ss_dssp             B------CGG-------------GTTT-------------SBH-----------------H-----HHSBCSCCEEETTS
T ss_pred             c------ccc-------------cccc-------------ccc-----------------c-----ccccccccccccch
Confidence            0      000             0000             000                 0     23577999999999


Q ss_pred             CHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          370 SLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       370 sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      ++.+++..|.++  +.+||||++  |+++||||++||++++.+
T Consensus        92 ~l~~~~~~~~~~--~~l~Vvd~~--~~~~Givt~~dil~~l~~  130 (132)
T d1yava3          92 PIMKGFGMVINN--GFVCVENDE--QVFEGIFTRRVVLKELNK  130 (132)
T ss_dssp             BHHHHHHHTTTC--SEEEEECTT--CBEEEEEEHHHHHHHHHH
T ss_pred             hHHHHHHHHHhC--CEEEEEccC--CEEEEEEEHHHHHHHHHh
Confidence            999999999876  469999998  999999999999999876

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.66  E-value=8.9e-17  Score=137.22  Aligned_cols=126  Identities=16%  Similarity=0.166  Sum_probs=105.6

Q ss_pred             hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCc---
Q 013939            9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCL---   85 (433)
Q Consensus         9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l---   85 (433)
                      +|.|+|.  ++++++++++|+.+|+++|.+++++++||+|               ++++|+++..|++.++......   
T Consensus         2 ~V~~lM~--~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d---------------~~lvg~~~~~~~~~~~~~~~~~~~~   64 (135)
T d3ddja2           2 NIETLMI--KNPPILSKEDRLGSAFKKINEGGIGRIIVAN---------------EKIEGLLTTRDLLSTVESYCKDSCS   64 (135)
T ss_dssp             SGGGTCE--ESCCEECTTSBHHHHHHHTTGGGCCEEEEES---------------SSEEEEEEHHHHHGGGTTCC---CC
T ss_pred             EeeEEee--CCCeEECCCCcHHHHHHHHHHhCCeEEEEEe---------------cceeceeeccchhhhhccccccchh
Confidence            4789996  4678999999999999999999999999987               4799999999999988643211   


Q ss_pred             -chHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcc
Q 013939           86 -EDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSS  163 (433)
Q Consensus        86 -~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~  163 (433)
                       .......+.+|+++|..+   ++++.+++++.+|+++|. ++++++||+++++                          
T Consensus        65 ~~~~~~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g--------------------------  115 (135)
T d3ddja2          65 QGDLYHISTTPIIDYMTPN---PVTVYNTSDEFTAINIMVTRNFGSLPVVDIND--------------------------  115 (135)
T ss_dssp             HHHHHHHHTSBGGGTSEES---CCCEETTSCHHHHHHHHHHHTCSEEEEECTTS--------------------------
T ss_pred             hhhccccccCCHHHHhCCc---cceEEeccccchhhhhhhhcceeEEEEEeCCC--------------------------
Confidence             112334578999999976   999999999999999999 8999999986532                          


Q ss_pred             ccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          164 SNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                          +++|+||++||++++.+
T Consensus       116 --------------------~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2         116 --------------------KPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             --------------------CEEEEEEHHHHGGGGGG
T ss_pred             --------------------EEEEEEEHHHHHHHHHH
Confidence                                56999999999998753

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=9.3e-16  Score=136.14  Aligned_cols=138  Identities=14%  Similarity=0.126  Sum_probs=93.1

Q ss_pred             eEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCC
Q 013939          223 YSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSF  301 (433)
Q Consensus       223 vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~  301 (433)
                      ++++.+++|+.+|.++|.+ +++++|||++.+++  +++|+||.+||+.+....     ..         ....-.....
T Consensus        19 ~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~--~lvG~is~~dl~~~l~~~-----~~---------~~~~~~~~~~   82 (169)
T d2j9la1          19 TVLTQDSMTVEDVETIISETTYSGFPVVVSRESQ--RLVGFVLRRDLIISIENA-----RK---------KQDGVVSTSI   82 (169)
T ss_dssp             CCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTC--BEEEEEEHHHHHHHHHHH-----HT---------SCSCCCTTCE
T ss_pred             EEECCCcCCHHHHHHHHHHcCCCceeeeecCCCC--eEEEEEEhHHHHHHHhcc-----cc---------cccccccchh
Confidence            4567788999999999999 99999999643266  999999999999764110     00         0000000000


Q ss_pred             CCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHc
Q 013939          302 PDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSH  381 (433)
Q Consensus       302 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~  381 (433)
                      .      .+.......     .........                 ++     ..|.+++++|.|+++|.+++.+|.++
T Consensus        83 ~------~~~~~~~~~-----~~~~~~~~~-----------------v~-----~im~~~~~tv~~~~~l~~v~~~~~~~  129 (169)
T d2j9la1          83 I------YFTEHSPPL-----PPYTPPTLK-----------------LR-----NILDLSPFTVTDLTPMEIVVDIFRKL  129 (169)
T ss_dssp             E------ECSSSCCCC-----CTTCCCCEE-----------------CG-----GGEESSCCEEETTSBHHHHHHHHHHH
T ss_pred             h------hhcccchhh-----hhccccccc-----------------hh-----hhccCCCEEECCCCcHHHHHHHHHhc
Confidence            0      000000000     000000000                 11     33678999999999999999999999


Q ss_pred             CCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939          382 RATHVWVTEDESDDVLVGVVGYADILVAVTK  412 (433)
Q Consensus       382 ~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~  412 (433)
                      +++++||+|+   |+++||||++||++++.+
T Consensus       130 ~~~~l~V~d~---g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1         130 GLRQCLVTHN---GRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             TCSEEEEEET---TEEEEEEEHHHHHHHHHH
T ss_pred             CceEEEEEEC---CEEEEEEEHHHHHHHHHH
Confidence            9999999875   899999999999999976

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.5e-15  Score=134.72  Aligned_cols=135  Identities=19%  Similarity=0.236  Sum_probs=104.5

Q ss_pred             cchhHhhhhcCC---CC-eEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhc
Q 013939            6 IYHVVGDLTVGK---PE-LAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAK   81 (433)
Q Consensus         6 ~~~~v~DL~~~k---~~-lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~   81 (433)
                      |...++|+|.-.   +. .+.+.++.|+++|+++|.+++++++||++++.           +++++|+||..||+.++..
T Consensus         1 ~~~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~-----------~~~lvG~is~~dl~~~l~~   69 (169)
T d2j9la1           1 HKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE-----------SQRLVGFVLRRDLIISIEN   69 (169)
T ss_dssp             CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT-----------TCBEEEEEEHHHHHHHHHH
T ss_pred             CccchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCC-----------CCeEEEEEEhHHHHHHHhc
Confidence            345688999522   23 36677899999999999999999999996542           3789999999999998852


Q ss_pred             C----CCcc--------------hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccc
Q 013939           82 S----DCLE--------------DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMS  142 (433)
Q Consensus        82 ~----~~l~--------------~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~  142 (433)
                      .    ....              ........+|+++|.++   ++++.++++|.+|+++|. +|++++||.+++      
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~g------  140 (169)
T d2j9la1          70 ARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS---PFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG------  140 (169)
T ss_dssp             HHTSCSCCCTTCEEECSSSCCCCCTTCCCCEECGGGEESS---CCEEETTSBHHHHHHHHHHHTCSEEEEEETT------
T ss_pred             ccccccccccchhhhhcccchhhhhccccccchhhhccCC---CEEECCCCcHHHHHHHHHhcCceEEEEEECC------
Confidence            1    0000              01112345689999976   899999999999999998 789999886532      


Q ss_pred             cchhhhccccccccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHc
Q 013939          143 KRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGC  201 (433)
Q Consensus       143 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~  201 (433)
                                                               +++||||++||++|+.+.
T Consensus       141 -----------------------------------------~lvGiIt~~Dil~~l~~~  158 (169)
T d2j9la1         141 -----------------------------------------RLLGIITKKDVLKHIAQM  158 (169)
T ss_dssp             -----------------------------------------EEEEEEEHHHHHHHHHHH
T ss_pred             -----------------------------------------EEEEEEEHHHHHHHHHHH
Confidence                                                     458999999999999763

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.62  E-value=1e-15  Score=130.38  Aligned_cols=116  Identities=15%  Similarity=0.216  Sum_probs=100.7

Q ss_pred             hHhhhhcCCCCeEEEcCCccHHHHHHHHHhc-----CCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            9 VVGDLTVGKPELAEFYETETVEAAIKAIGES-----TECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~-----~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      ++|.+|.  ++++++++++||++|++.|.++     ++..+||+|.+             ++++|+++..|++..     
T Consensus         2 taG~iM~--~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-------------~~l~G~v~~~~l~~~-----   61 (127)
T d2ouxa2           2 TAGAIMT--TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-------------NHLVGVISLRDLIVN-----   61 (127)
T ss_dssp             BHHHHCB--SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-------------CBEEEEEEHHHHTTS-----
T ss_pred             ChhHhCC--CCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecC-------------CeEEEEEEeeccccc-----
Confidence            5788885  7899999999999999999888     47899999974             799999999998632     


Q ss_pred             CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939           84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS  162 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  162 (433)
                             ..+.+|+++|.++   ++++.+++++.+|+++|. ++++++||+++++                         
T Consensus        62 -------~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g-------------------------  106 (127)
T d2ouxa2          62 -------DDDTLIADILNER---VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDD-------------------------  106 (127)
T ss_dssp             -------CTTSBHHHHSBSC---CCCEETTSBHHHHHHHHHHHTCSEEEEECTTC-------------------------
T ss_pred             -------cccEEhhhhccCC---CccCCCCCCHHHHHHHHHHhCCEEEEEEeCCC-------------------------
Confidence                   1247899999975   899999999999999999 7999999986532                         


Q ss_pred             cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                           +++|+||..||++++.+
T Consensus       107 ---------------------~lvGiIt~~Dil~~i~e  123 (127)
T d2ouxa2         107 ---------------------HLLGIVTVDDIIDVIDD  123 (127)
T ss_dssp             ---------------------BEEEEEEHHHHHHHHHH
T ss_pred             ---------------------EEEEEEEHHHHHHHHHH
Confidence                                 56999999999999854

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.62  E-value=6e-16  Score=134.62  Aligned_cols=112  Identities=15%  Similarity=0.204  Sum_probs=89.7

Q ss_pred             hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcC-----
Q 013939            8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKS-----   82 (433)
Q Consensus         8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~-----   82 (433)
                      -+|+|+|.  ++++++++++|+.+|+++|.+++++++||+|...           .+.++|+++..|++.++...     
T Consensus        11 ~~V~diM~--~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~-----------~~~lvg~is~~dl~~~l~~~~~~~~   77 (160)
T d2d4za3          11 IQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPD-----------TNTLLGSIDRTEVEGLLQRRISAYR   77 (160)
T ss_dssp             CBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTT-----------TCBEEEEEEHHHHHHHHHHHHHTTS
T ss_pred             eEHHHhcC--CCCeEECCCCcHHHHHHHHHhcCCCccccccccc-----------cccccccchHHHHHHHHhhcccccc
Confidence            47899996  7899999999999999999999999999999643           37899999999999987631     


Q ss_pred             ----CCcc---hH-------HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939           83 ----DCLE---DQ-------DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS  135 (433)
Q Consensus        83 ----~~l~---~~-------~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~  135 (433)
                          +...   ..       .......+.++|...   +++++|+++|.+|+++|. +|++++||.++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~  142 (160)
T d2d4za3          78 RQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQS---PFQLVEGTSLQKTHTLFSLLGLDRAYVTSM  142 (160)
T ss_dssp             SSCCCSCCBHHHHHHHHHHHTTCBCCTTSSCEECC---SCCBCTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             ccchhhccccchhhhhhhhhcccccceeeecccCC---CEEEcCCCCHHHHHHHHHHcCCeEEEEEEC
Confidence                0000   00       011234567788865   899999999999999999 79999999753

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.62  E-value=1e-15  Score=129.87  Aligned_cols=112  Identities=15%  Similarity=0.210  Sum_probs=91.4

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      .+++++++++|+.+|+++|.+++++++||+|...           +++++|+||..||+.....           +.++.
T Consensus         5 ~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~-----------~~~lvGivt~~Di~~~~~~-----------~~~~~   62 (126)
T d1zfja4           5 IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLA-----------NRKLVGIITNRDMRFISDY-----------NAPIS   62 (126)
T ss_dssp             SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT-----------TCBEEEEEEHHHHHHCSCS-----------SSBTT
T ss_pred             eCceEECCCCCHHHHHHHHHHhCCCcEEEEeecc-----------CCeEEEEeEHHHHHHhhcc-----------CCcee
Confidence            3568999999999999999999999999999632           3799999999999765322           23444


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCCCCC
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSS  176 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~  176 (433)
                      ..|..  .+++++.+++++.+|+++|. ++++++||+++++                                       
T Consensus        63 ~~~~~--~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g---------------------------------------  101 (126)
T d1zfja4          63 EHMTS--EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG---------------------------------------  101 (126)
T ss_dssp             TSCCC--SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTS---------------------------------------
T ss_pred             eeeec--cceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCC---------------------------------------
Confidence            44432  25889999999999999999 8999999986532                                       


Q ss_pred             CCcCCCCCeEEEeeHHHHHHHHH
Q 013939          177 SSTTSVRDKFCCLSREDVIRFLI  199 (433)
Q Consensus       177 ~~~~~~~~~~~iiTq~Dvi~~l~  199 (433)
                             +++||||..|+++.+.
T Consensus       102 -------~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4         102 -------RLSGLITIKDIEKVIE  117 (126)
T ss_dssp             -------BEEEEEEHHHHHHHHH
T ss_pred             -------eEEEEEEHHHHHHHhh
Confidence                   5689999999999874

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.61  E-value=1.7e-15  Score=128.66  Aligned_cols=121  Identities=17%  Similarity=0.105  Sum_probs=98.3

Q ss_pred             hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939            9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ   88 (433)
Q Consensus         9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~   88 (433)
                      +|+|+|.  ++++++++++|+.+|++.|.+++++++||++.+.           +++++|+++..|+++++......   
T Consensus         2 ~V~dim~--~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~-----------~~~~iGi~~~~dl~~~~~~~~~~---   65 (131)
T d2riha1           2 RTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTARDN-----------PKRPVAVVSERDILRAVAQRLDL---   65 (131)
T ss_dssp             BGGGGCC--SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTE-----------EEEEEEEEEHHHHHHHHHTTCCT---
T ss_pred             CHHHhcc--CCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcC-----------CCEEEEEEeeecccccccccccc---
Confidence            5899985  6779999999999999999999999999996432           37899999999999988654221   


Q ss_pred             HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccccc
Q 013939           89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNL  167 (433)
Q Consensus        89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  167 (433)
                          ...+ ..|..   +++++.+++++.+|++.|. ++++++||+++++                              
T Consensus        66 ----~~~~-~~~~~---~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g------------------------------  107 (131)
T d2riha1          66 ----DGPA-MPIAN---SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNG------------------------------  107 (131)
T ss_dssp             ----TSBS-GGGCB---CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTS------------------------------
T ss_pred             ----cccc-ccccc---cceeEeeecchHHHHHHHHHCCeEEEEEEcCCC------------------------------
Confidence                1223 33332   3788999999999999999 7999999986532                              


Q ss_pred             ccccCCCCCCCcCCCCCeEEEeeHHHHHHHHH
Q 013939          168 IANANRPSSSSTTSVRDKFCCLSREDVIRFLI  199 (433)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~  199 (433)
                                      +++|+||+.|+++++.
T Consensus       108 ----------------~l~Giit~~Dll~~~~  123 (131)
T d2riha1         108 ----------------ELVGVLSIRDLCFERA  123 (131)
T ss_dssp             ----------------CEEEEEEHHHHHSCHH
T ss_pred             ----------------eEEEEEEHHHHHHHHH
Confidence                            5689999999998764

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.60  E-value=2.7e-16  Score=132.95  Aligned_cols=98  Identities=18%  Similarity=0.204  Sum_probs=68.6

Q ss_pred             hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939            9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ   88 (433)
Q Consensus         9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~   88 (433)
                      +|+|+|.  ++++++++++|+.+|+++|.+++++++||+|..             ++++|+||..|++...         
T Consensus         2 ~v~diM~--~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-------------~~~~G~it~~dl~~~~---------   57 (122)
T d2yzqa2           2 RVKTIMT--QNPVTITLPATRNYALELFKKYKVRSFPVVNKE-------------GKLVGIISVKRILVNP---------   57 (122)
T ss_dssp             BHHHHSE--ESCCCEESSCC------------CCEEEEECTT-------------CCEEEEEESSCC-------------
T ss_pred             CcccccC--CCCEEECCcCcHHHHHHHHHHcCCcEEEEEecc-------------ccchhhhhcchhhhhh---------
Confidence            5789986  578999999999999999999999999999864             7999999999998642         


Q ss_pred             HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939           89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV  136 (433)
Q Consensus        89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~  136 (433)
                         .+.++.++|.++   ++++++++++.+|+++|. ++++++||++++
T Consensus        58 ---~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~  100 (122)
T d2yzqa2          58 ---DEEQLAMLVKRD---VPVVKENDTLKKAAKLMLEYDYRRVVVVDSK  100 (122)
T ss_dssp             ---------CCCBSC---CCEEETTSBHHHHHHHHHHHTCSEEEEECTT
T ss_pred             ---cccchhhccccc---eeecchhhHHHHHHHHHHHcCcEEEEEEeCC
Confidence               135788999876   899999999999999999 899999998653

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=6.4e-16  Score=134.48  Aligned_cols=116  Identities=23%  Similarity=0.267  Sum_probs=100.9

Q ss_pred             hHhhhhcCCCCeEEEcCCccHHHHHHHHHhc-----CCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939            9 VVGDLTVGKPELAEFYETETVEAAIKAIGES-----TECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD   83 (433)
Q Consensus         9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~-----~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~   83 (433)
                      +++.+|.  ++++++++++||.+|++.|.++     ++.++||+|..             ++++|+++..||+..     
T Consensus         2 taG~iM~--~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-------------~~l~G~v~~~dl~~~-----   61 (144)
T d2yvxa2           2 EAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-------------GRLKGVLSLRDLIVA-----   61 (144)
T ss_dssp             SSGGGCB--SCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTT-------------CBBCCBCBHHHHTTS-----
T ss_pred             CcccccC--CCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCC-------------CCEecccchhhhhhc-----
Confidence            4688885  7899999999999999999887     48999999974             899999999998643     


Q ss_pred             CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939           84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS  162 (433)
Q Consensus        84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  162 (433)
                             ..+.++.++|.++   ++++.|++++.+|+++|. ++++++||+++++                         
T Consensus        62 -------~~~~~v~~im~~~---~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g-------------------------  106 (144)
T d2yvxa2          62 -------DPRTRVAEIMNPK---VVYVRTDTDQEEVARLMADYDFTVLPVVDEEG-------------------------  106 (144)
T ss_dssp             -------CTTCBSTTTSBSS---CCCEESSCCHHHHHHHHHHSCCSEEEEECSSC-------------------------
T ss_pred             -------ccccchHHhcccC---CccCCCCChHHHHHHHHHHcCCCEEEEEeECC-------------------------
Confidence                   1247899999976   999999999999999999 7899999987532                         


Q ss_pred             cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                           +++|+||..||++++.+
T Consensus       107 ---------------------~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2         107 ---------------------RLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             ---------------------BEEEEEEHHHHHHHHHH
T ss_pred             ---------------------EEEEEEEHHHHHHHHHH
Confidence                                 56999999999999975

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.56  E-value=1.3e-16  Score=134.79  Aligned_cols=99  Identities=19%  Similarity=0.268  Sum_probs=43.5

Q ss_pred             CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939           18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS   97 (433)
Q Consensus        18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~   97 (433)
                      ++++++++++|+.+|+++|.+++++++||+|.+..          .++++||||.+|+.....         ..++.++.
T Consensus         4 ~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~----------~~~lvGivT~~Di~~~~~---------~~~~~~~~   64 (120)
T d1jr1a4           4 TDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRM----------GSRLVGIISSRDIDFLKE---------EEHDRFLE   64 (120)
T ss_dssp             CTTCC----CCCC--CCBC---------------C----------TTCCC------------------------------
T ss_pred             cCCEEECCcCCHHHHHHHHHHhCCCeEEEeecccc----------CCeEeeeeeeeeeeehhc---------cccCceeE
Confidence            44589999999999999999999999999986321          379999999999864321         12245666


Q ss_pred             hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939           98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV  136 (433)
Q Consensus        98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~  136 (433)
                      ++|... .+++++.+++++.+|+++|. ++++++||++++
T Consensus        65 ~~~~~~-~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~  103 (120)
T d1jr1a4          65 EIMTKR-EDLVVAPAGITLKEANEILQRSKKGKLPIVNEN  103 (120)
T ss_dssp             -CCSBT-TTSCCEETTCCHHHHHHHTCSCC---CEEEETT
T ss_pred             EEEeec-cCceEECCCCCHHHHHHHHHHcCccEEEEEcCC
Confidence            666532 35899999999999999999 789999998754

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=6.8e-15  Score=123.82  Aligned_cols=116  Identities=16%  Similarity=0.145  Sum_probs=100.9

Q ss_pred             hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939            9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ   88 (433)
Q Consensus         9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~   88 (433)
                      +|+++|.  +++.++++++|+.+|++.|.+++.+++||+|.+             ++++|+++..|++++.         
T Consensus         2 ~v~~~m~--~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~-------------~~~~Gii~~~dl~~~~---------   57 (121)
T d1vr9a3           2 KVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDRE-------------GHFRGVVNKEDLLDLD---------   57 (121)
T ss_dssp             BGGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-------------SBEEEEEEGGGGTTSC---------
T ss_pred             Cchhhhc--CCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCC-------------ceeEEEeehhhhhhhh---------
Confidence            4678775  678999999999999999999999999999863             7999999999997531         


Q ss_pred             HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccccc
Q 013939           89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNL  167 (433)
Q Consensus        89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  167 (433)
                         .+.++.++|..+   ++++++++++.+|++.|. ++++++||+++++                              
T Consensus        58 ---~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g------------------------------  101 (121)
T d1vr9a3          58 ---LDSSVFNKVSLP---DFFVHEEDNITHALLLFLEHQEPYLPVVDEEM------------------------------  101 (121)
T ss_dssp             ---TTSBSGGGCBCT---TCCEETTSBHHHHHHHHHHCCCSEEEEECTTC------------------------------
T ss_pred             ---ccccccccccCc---cEEECCCCCHHHHHHHHHhcCceeeeeECCCC------------------------------
Confidence               246899999865   889999999999999999 7899999987643                              


Q ss_pred             ccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939          168 IANANRPSSSSTTSVRDKFCCLSREDVIRFLIG  200 (433)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~  200 (433)
                                      +++|+||..|+++++.+
T Consensus       102 ----------------~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3         102 ----------------RLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             ----------------BEEEEEEHHHHHHHHHH
T ss_pred             ----------------eEEEEEEHHHHHHHHHH
Confidence                            46899999999999875