Citrus Sinensis ID: 013954

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
Protein Sequence
MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEPEASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDKDVARAAVEKAKEYKKNKDTVSFQNGTNSGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQRGSINF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccEccccccccccEEEEcccccccccccEEEccEEEEEccHHHccccccccccccccccccccccccEEEEEEccccHcccccccccccccccccccccccEcEccccccccccHHHcccccEEccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MASLQTSWLSSVSTIknkndssakqkpklsslKLSFFLnatsnndeaseqpisenspepeasldpVKLAFEKAKAYRKLKesnsdskyeqnpdKDVARAAVEKAKEykknkdtvsfqngtnsgegrgnlpkevggkkeglkISSIDfmglnfadkkegkglpaglvpvtdpfaegdtpeveiivgdtskfgestvlrpgpkqeenlefykpkvstwgvfprpgnisktfgggrtirpgdvLETAEARAAKEERTRQLLAAYKKSvglnvdpklKSECEKALKdgdslmdsgklkeaLPFYEKVMNKMVFKSELHGLAALQWSIcqdslhrpKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRsssdkntdyRNFFEAFVEdktnyplqeagseegalTQALPYMIFLASPIFVILLIAVQRGSINF
Flexible Loop (DISEMBL)
maslqtswlssvstiknkndssakqkpklssLKLSFFLNATSnndeaseqpisenspepeasldPVKLAFEKAKAYRklkesnsdskyeqnpdkDVARAAVEKAkeykknkdtvsfqngtnsgegrgnlpkevggkkEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVgdtskfgestvlrpgpkqeenlefykpkvstwgvfprpgnisktfgggrtirpgDVLETAEARAAKEERTRQLLAAykksvglnvdpklKSECEKAlkdgdslmdsgkLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQRGSINF
Low Complexity Region (SEG)
MASLQTSWLSSVSTIKNKNDssakqkpklsslklsfflNATSNNDEASEQPISENSPEPEASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDKDVARAAVEKAKEYKKNKDTVSFQNGTNSGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLetaearaakeertrQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQRGSINF
Disordered region (IsUnstruct)
*********************************************************************************************************************************************ISSIDFMGLNFAD*****GLPAGLVPVTDPFAEG*TPEVEIIVGD*******************LEFYKPKVSTWGVFPRPGNISKTFGGGRTI***********************AAY*********************************EALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL******LV***ARQFMFSFQ****************YRNFFEAFVEDKTNYPL******EGALTQALPYMIFLASPIFVILLIAVQR*****
Disordered Region (DISOPRED)
********************************************************************AFE**********************************************************************ISSIDFMG***************************TPEVEIIVGDT************************KVSTWGVFPRPGNISKTFGGGR*I*****************************************CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ***********RQFMFSFQA******************FFEAF**********************LPYMIFLASPIFVILLIAVQRG****
Disordered Region (DISEMBL)
MASLQTSWLSSVS**************KLSSLKLSFFLNATSN*******************LDPVKLAFEKAKAY*******************VARAAVEKAKEYKKNKDTVSFQNGTNSGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMM********NTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQRGSINF
Disordered Region (DISPRO)
*********SS**TIKNKNDSSAKQKPKLSSLKLSFFLNA*********************SLDPVKLAFEKAKAYRKLKE************KDVARAA*E********KDTVSFQN***SGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFG**************LEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPG*VLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQRGS***
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEPEASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDKDVARAAVEKAKEYKKNKDTVSFQNGTNSGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQRGSINF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
255544061	452	conserved hypothetical protein [Ricinus	0.928	0.889	0.617	1e-140
356538737	442	PREDICTED: uncharacterized protein LOC10	0.981	0.961	0.561	1e-133
225449870	457	PREDICTED: uncharacterized protein LOC10	0.942	0.892	0.555	1e-129
296081287	454	unnamed protein product [Vitis vinifera]	0.942	0.898	0.552	1e-129
449452134	475	PREDICTED: uncharacterized protein LOC10	0.859	0.783	0.581	1e-125
224053314	315	predicted protein [Populus trichocarpa]	0.685	0.942	0.725	1e-124
79570570	465	uncharacterized protein [Arabidopsis tha	0.963	0.896	0.563	1e-121
357473415	442	hypothetical protein MTR_4g071010 [Medic	0.914	0.895	0.576	1e-121
20197392	435	hypothetical protein [Arabidopsis thalia	0.963	0.958	0.563	1e-121
297823763	458	binding protein [Arabidopsis lyrata subs	0.953	0.901	0.545	1e-120

>gi|255544061|ref|XP_002513093.1| conserved hypothetical protein [Ricinus communis] gi|223548104|gb|EEF49596.1| conserved hypothetical protein [Ricinus communis]

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 274/444 (61%), Positives = 330/444 (74%), Gaps = 42/444 (9%)

Query: 25  QKPKLSSL--------KLSFFLNATSNNDEASEQPISENSPEPEASLDPVKLAFEKAKAY 76
           QKP  +SL        K+SF LN +  N E+S+ P  E++PEP+   DPVKLAFEKAKAY
Sbjct: 15  QKPTTTSLLPSKTSFFKVSFSLNPS--NAESSQNP-PESTPEPDP--DPVKLAFEKAKAY 69

Query: 77  RKLKESNSDSKYEQNP----------DKDV---ARAAVEKAKEYKKNKDTVSFQNGTNS- 122
           +K  E    +K EQNP          DK+V    + A+EKA+EYKKN+  V  +  T S 
Sbjct: 70  KKTIEETKKAKLEQNPVEGSAGNNGKDKEVPVSVKVAMEKAREYKKNQ-VVGTKGATESE 128

Query: 123 ------GEGRGNLPK----EVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPF 172
                     GNL +    +   KK+ L ISSIDFMGLNFADKK G+GLPAGL PV DPF
Sbjct: 129 MSSGLKARSEGNLQRGSIEKTATKKDKLSISSIDFMGLNFADKKTGRGLPAGLAPVIDPF 188

Query: 173 AEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGG 232
            EG+ PEVEIIVGDT  F + T   P P Q+E+ + YKPKVSTWGVFPRPGNISKTFGGG
Sbjct: 189 PEGNLPEVEIIVGDTDNFDDPTTSMPKPSQDESSDVYKPKVSTWGVFPRPGNISKTFGGG 248

Query: 233 RTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGK 292
           RTIRPGDVLETAE RAAK++RT+QLLAAY+K +GL++DPK+K ECEKALKDGDSLMDSGK
Sbjct: 249 RTIRPGDVLETAEERAAKDDRTKQLLAAYRKKMGLSIDPKIKFECEKALKDGDSLMDSGK 308

Query: 293 LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKR 352
           LKEA+P+Y+KV++K+ F+SELHGLAALQWSICQDSL R  EA+ MYEKLQSHPNA VSK+
Sbjct: 309 LKEAVPYYQKVIDKLPFQSELHGLAALQWSICQDSLSRQNEAQAMYEKLQSHPNAKVSKK 368

Query: 353 ARQFMFSFQAMEMMKVRSSS--DKNTDYRNFFEAFVEDKTNYP--LQEAGSEEGALTQAL 408
           ARQFMFSFQAMEM+KV  SS   ++T Y+N+FEAFVEDKT Y     E+  E G L+QAL
Sbjct: 369 ARQFMFSFQAMEMLKVTGSSFLPESTGYQNYFEAFVEDKTKYSPGEGESEEEGGGLSQAL 428

Query: 409 PYMIFLASPIFVILLIAVQRGSIN 432
           PY++FL SP+F++LL+AVQ GSI+
Sbjct: 429 PYVLFLVSPVFIVLLMAVQGGSIH 452

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538737|ref|XP_003537857.1| PREDICTED: uncharacterized protein LOC100784194 [Glycine max]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 250/445 (56%), Positives = 317/445 (71%), Gaps = 20/445 (4%)

Query: 1   MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEPE 60
           MA LQ  W SS+  + +    +A   P  +         A   ++  S +P S ++PEP 
Sbjct: 1   MACLQPPWFSSLRVV-SPAKLAAGPPPSTTYKPAKLLFWAVGPDNAESSEPASPDAPEPA 59

Query: 61  ASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDK-------DVARAAVEKAKEYKKNKDT 113
           A +DPV+LAF KA AY+    ++ +S  E+N          D  + A+EKAK+YK+NK  
Sbjct: 60  APVDPVELAFSKANAYKADYNNDENSAEERNVGDETPKDLPDSVKIAIEKAKKYKQNKAV 119

Query: 114 VSFQNGTNSGEG---RGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTD 170
            +    T    G   R +   +VG K E L +S +DF GL+FADKK  +GLP GLVP+++
Sbjct: 120 AAVTETTQGSLGVSERSSGKNKVGKKGE-LSVSRMDFAGLDFADKKMTRGLPPGLVPISE 178

Query: 171 PFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQ---EENLEFYKPKVSTWGVFPRPGNISK 227
           P+ +GD PEVE+I+GDTSKF ++T   P P+Q   E+  E YKPKVSTWGVFPRPGNISK
Sbjct: 179 PYFDGDLPEVELIIGDTSKFDDATT--PEPEQTNKEDEAELYKPKVSTWGVFPRPGNISK 236

Query: 228 TFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSL 287
           TFGGGR IRPG+VLET E +A KE RT+QLLAAYKK  GLNVDPKLKSECE+ALKDGD L
Sbjct: 237 TFGGGRVIRPGEVLETKEEKAVKEARTKQLLAAYKKKTGLNVDPKLKSECEEALKDGDLL 296

Query: 288 MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNA 347
           M+ GKLKEALP+YEKVM+K+ F+SELHGLAALQWSICQDSL R  EAR MYEKL+SHPN 
Sbjct: 297 MNVGKLKEALPYYEKVMDKLTFQSELHGLAALQWSICQDSLSRSNEARGMYEKLKSHPNP 356

Query: 348 LVSKRARQFMFSFQAMEMMKVRSSSD---KNTDYRNFFEAFVEDKTNYPLQEAGSEEGAL 404
            VSK+ARQFM+SFQAMEMMK+ + S    KN+DY+N+F+AFVE+K+NYP  +   +E A+
Sbjct: 357 KVSKKARQFMYSFQAMEMMKMTTGSQFYLKNSDYQNYFDAFVENKSNYPGGDGPVQESAM 416

Query: 405 TQALPYMIFLASPIFVILLIAVQRG 429
            Q LPY++FL SPIFV+LLIAV++G
Sbjct: 417 NQVLPYILFLVSPIFVVLLIAVRKG 441

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449870|ref|XP_002265393.1| PREDICTED: uncharacterized protein LOC100248180 [Vitis vinifera]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/463 (55%), Positives = 315/463 (68%), Gaps = 55/463 (11%)

Query: 1   MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEP- 59
           ++S + S  +S + I N         P++  LK+SF  + + +N E+S      +   P 
Sbjct: 17  ISSTKPSLFTSTTPILN---------PQIRPLKVSF--SQSQSNAESSPSNSPNSGEGPL 65

Query: 60  ---EASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDKDV----------------ARAA 100
                S DP KL+F +AK Y+K  +   D     NP                     + A
Sbjct: 66  EVKPGSSDPDKLSFARAKEYKKTTKQEMDG----NPGLGSEGNGNGGGEAQEMPVSVKIA 121

Query: 101 VEKAKEYKKNKDTVSFQNGTNSGEGRGNLPK-----------EVGG-KKEGLKISSIDFM 148
           +EKAKEY KNK  V    G +  E    L             E G  KKE L ISSIDF+
Sbjct: 122 LEKAKEYTKNKGVV----GDSRSEALSELTGGNAGNLGNGIVEKGDDKKEQLAISSIDFV 177

Query: 149 GLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEF 208
           GLNF+DKK G+GLPAGLVPV+DPF EGD P VE+IVGDTSKF ++T   P P Q++N + 
Sbjct: 178 GLNFSDKKTGRGLPAGLVPVSDPFPEGDLPGVELIVGDTSKFEDATSSNPKPTQDDNSDL 237

Query: 209 YKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLN 268
           YKPKVSTWGVFPRP NISKTFGGGR IRPG+VLETA+ +AAKE RTRQLLAAYK  +GLN
Sbjct: 238 YKPKVSTWGVFPRPNNISKTFGGGRVIRPGEVLETADDKAAKEARTRQLLAAYKTKIGLN 297

Query: 269 VDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 328
           +DPKLKSEC++ALK+GDSLM+ GKLKEALP+YEKVM+K+ F+SELHGLAALQWSIC DSL
Sbjct: 298 IDPKLKSECDQALKNGDSLMNIGKLKEALPYYEKVMDKLTFQSELHGLAALQWSICLDSL 357

Query: 329 HRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSSD-KNTDYRNFFEAFVE 387
            RP EAR+MYE+LQ+HPNALVSK+ARQ +F FQAMEMMKV S    KNT Y+NFFEAF+E
Sbjct: 358 SRPDEARVMYERLQTHPNALVSKKARQLIFGFQAMEMMKVTSQLPLKNTGYQNFFEAFIE 417

Query: 388 DKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQRGS 430
           DK NY L++    E  L QALPY+IFL SPIF++ LIA+Q+G+
Sbjct: 418 DKANYSLKD---NEVELGQALPYIIFLVSPIFIVFLIALQKGT 457

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081287|emb|CBI17731.3| unnamed protein product [Vitis vinifera]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/460 (55%), Positives = 315/460 (68%), Gaps = 52/460 (11%)

Query: 1   MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEP- 59
           ++S + S  +S + I N         P++  LK+SF  + + +N E+S      +   P 
Sbjct: 17  ISSTKPSLFTSTTPILN---------PQIRPLKVSF--SQSQSNAESSPSNSPNSGEGPL 65

Query: 60  ---EASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDKDV----------------ARAA 100
                S DP KL+F +AK Y+K  +   D     NP                     + A
Sbjct: 66  EVKPGSSDPDKLSFARAKEYKKTTKQEMDG----NPGLGSEGNGNGGGEAQEMPVSVKIA 121

Query: 101 VEKAKEYKKNKDTVSFQNGTNSGEGRGN---------LPKEVGGKKEGLKISSIDFMGLN 151
           +EKAKEY KNK  V    G +  E             + ++   KKE L ISSIDF+GLN
Sbjct: 122 LEKAKEYTKNKGVV----GDSRSEALSGGNAGNLGNGIVEKGDDKKEQLAISSIDFVGLN 177

Query: 152 FADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKP 211
           F+DKK G+GLPAGLVPV+DPF EGD P VE+IVGDTSKF ++T   P P Q++N + YKP
Sbjct: 178 FSDKKTGRGLPAGLVPVSDPFPEGDLPGVELIVGDTSKFEDATSSNPKPTQDDNSDLYKP 237

Query: 212 KVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDP 271
           KVSTWGVFPRP NISKTFGGGR IRPG+VLETA+ +AAKE RTRQLLAAYK  +GLN+DP
Sbjct: 238 KVSTWGVFPRPNNISKTFGGGRVIRPGEVLETADDKAAKEARTRQLLAAYKTKIGLNIDP 297

Query: 272 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 331
           KLKSEC++ALK+GDSLM+ GKLKEALP+YEKVM+K+ F+SELHGLAALQWSIC DSL RP
Sbjct: 298 KLKSECDQALKNGDSLMNIGKLKEALPYYEKVMDKLTFQSELHGLAALQWSICLDSLSRP 357

Query: 332 KEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSSD-KNTDYRNFFEAFVEDKT 390
            EAR+MYE+LQ+HPNALVSK+ARQ +F FQAMEMMKV S    KNT Y+NFFEAF+EDK 
Sbjct: 358 DEARVMYERLQTHPNALVSKKARQLIFGFQAMEMMKVTSQLPLKNTGYQNFFEAFIEDKA 417

Query: 391 NYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQRGS 430
           NY L++    E  L QALPY+IFL SPIF++ LIA+Q+G+
Sbjct: 418 NYSLKD---NEVELGQALPYIIFLVSPIFIVFLIALQKGT 454

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452134|ref|XP_004143815.1| PREDICTED: uncharacterized protein LOC101215292 [Cucumis sativus]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/418 (58%), Positives = 293/418 (70%), Gaps = 46/418 (11%)

Query: 52  ISENSPEPEASLDPVKLAFEKAKAYRKLKESNS--------------------------- 84
           +S+ +P P   LDPVKLAFE+AKAY+KL +S S                           
Sbjct: 61  VSDAAPPP---LDPVKLAFERAKAYKKLSKSGSNLNVELKPGVGSEGNSVQTGKSGVLSF 117

Query: 85  DSKYEQNPDKDVARAAVEKAKEYKKNKDTVSFQNGT-----NSGEGR-----GNLP-KEV 133
           D   EQ   +   R AVE A E K     V+  +GT     N+ EG      GNL  K+ 
Sbjct: 118 DGADEQRKMQGGVRVAVESANEVKGEAKVVT--DGTKGGVINTNEGLNDRDGGNLGNKQK 175

Query: 134 GGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGES 193
           G KK  L ISSIDF+GL FADKK+ +GLPAGLVP++DPF+  D PEVEIIVGD+SKF ++
Sbjct: 176 GDKKGELSISSIDFIGLGFADKKKSRGLPAGLVPISDPFSVEDLPEVEIIVGDSSKFDDA 235

Query: 194 TVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEER 253
           TV    P QE++ +FYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLET E +A KE R
Sbjct: 236 TVSEIKPTQEDDSDFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETDEEKAVKEAR 295

Query: 254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL 313
           T++L+AAYKK  GL +D KLKSECE AL++GDSLM+ GKLKEALP+YE +M K+ F+SEL
Sbjct: 296 TKELIAAYKKKFGLTIDAKLKSECEMALEEGDSLMNDGKLKEALPYYETIMEKVNFQSEL 355

Query: 314 HGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRS--- 370
           HGLAALQWSICQDSL RP  AR MYEKL+SHPN  VSK+ARQFMFSFQAMEMMKV +   
Sbjct: 356 HGLAALQWSICQDSLSRPDVAREMYEKLKSHPNPRVSKKARQFMFSFQAMEMMKVTTSSS 415

Query: 371 SSDKNTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQR 428
               ++ YRN+FEAF+++K NY   E+G  EG L Q+LPY+IFL SPI ++L  AVQ+
Sbjct: 416 FLSNDSSYRNYFEAFLDNKLNYSADESGIGEGVLNQSLPYVIFLLSPILLVLFAAVQK 473

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053314|ref|XP_002297759.1| predicted protein [Populus trichocarpa] gi|222845017|gb|EEE82564.1| predicted protein [Populus trichocarpa]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/299 (72%), Positives = 252/299 (84%), Gaps = 2/299 (0%)

Query: 136 KKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTV 195
           K++ L ISSIDF+GL FADKK+G+GLPAGLVP+TDPF+EG+ P+VEIIVGDTSKF + + 
Sbjct: 17  KEQKLSISSIDFVGLEFADKKKGRGLPAGLVPITDPFSEGNLPDVEIIVGDTSKFEDPST 76

Query: 196 LRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTR 255
           L   P QE+N + YKPKVSTWGVFPRPGNISKTFGGG+TIRPGD LETAEARAAK+ERT+
Sbjct: 77  LTSKPTQEDNPDLYKPKVSTWGVFPRPGNISKTFGGGKTIRPGDELETAEARAAKDERTK 136

Query: 256 QLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG 315
           QL+AAY+KS+GLNVDP +K ECEKALKDGDSLMDSGKL +ALP+Y+ VM+K+ FKSELHG
Sbjct: 137 QLIAAYRKSIGLNVDPNVKLECEKALKDGDSLMDSGKLNDALPYYQMVMDKLPFKSELHG 196

Query: 316 LAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSS--SD 373
           LAALQWSICQDSL RP EAR MYEKLQSHPN  VSK ARQFMFSFQAME +K   S  S 
Sbjct: 197 LAALQWSICQDSLSRPNEARAMYEKLQSHPNVKVSKIARQFMFSFQAMEKLKFTGSNFSP 256

Query: 374 KNTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQRGSIN 432
            +T Y+ +FE FVEDKT+YP  EAG E G L QALPYMIFL SPIF++L  A++ G+ N
Sbjct: 257 TSTGYQYYFEKFVEDKTSYPQGEAGIEIGVLNQALPYMIFLVSPIFMVLFAALRGGNTN 315

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79570570|ref|NP_181412.2| uncharacterized protein [Arabidopsis thaliana] gi|330254489|gb|AEC09583.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/444 (56%), Positives = 310/444 (69%), Gaps = 27/444 (6%)

Query: 1   MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEPE 60
           MAS   SWLSS  T       S  Q PK  SLKLS F   ++++             E E
Sbjct: 31  MASFNHSWLSSPLTETPAFFFSPSQHPK--SLKLSLFRTRSNSSSPDRSS-------EVE 81

Query: 61  ASLDPVKLAFEKAKAYRKLKESNSDSKYEQNP-DKDV---ARAAVEKAKEYKKNK----D 112
             +DPVKLA +KA+AY+K K  +   K E+N  D+++    +AA++KA +YKK K    D
Sbjct: 82  LDVDPVKLALKKAEAYKKSK--SEQKKPEKNAGDEELPLSVKAAMQKANDYKKRKGLGTD 139

Query: 113 TVSFQNGTNSGEGRGNLPKEV----GGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPV 168
            V+    +N+ +    L  +V      KK+ LK+SSIDFMGL FADKK  +GLPAGLVPV
Sbjct: 140 AVAKAKPSNTDQSFVRLANKVVEDNDVKKKELKVSSIDFMGLGFADKKSTRGLPAGLVPV 199

Query: 169 TDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKT 228
            D   EGD PEVE IVGD ++F E  V     + + N + YKPKVSTWGVFPRP NISKT
Sbjct: 200 VDYLPEGDLPEVEFIVGDKTRFAEK-VKEVEQEGDGNSDVYKPKVSTWGVFPRPSNISKT 258

Query: 229 FGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLM 288
           FGGGRT+RPGD +ETAE R  +EE+T++LL AYK+S+GLN+DPKLK ECEKA+ +G+SLM
Sbjct: 259 FGGGRTLRPGDSVETAEERIVREEKTKKLLIAYKESLGLNIDPKLKLECEKAIDEGNSLM 318

Query: 289 DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNAL 348
           DSGKLKEALP+YEKVM K+VFKSELHGLAALQWSICQDSL +  +AR MYEKL SHPN  
Sbjct: 319 DSGKLKEALPYYEKVMEKIVFKSELHGLAALQWSICQDSLRKTDKARRMYEKLISHPNPG 378

Query: 349 VSKRARQFMFSFQAMEMMKVRSSS--DKNTDYRNFFEAFVEDKTNYPLQEAG-SEEGALT 405
           VSK+ARQFMFSFQAMEM+KV+ SS  + NT Y+++FEAFVEDKTNY  QE    EE  + 
Sbjct: 379 VSKKARQFMFSFQAMEMLKVKGSSFAEGNTGYQDYFEAFVEDKTNYKAQEEKEGEEMGIN 438

Query: 406 QALPYMIFLASPIFVILLIAVQRG 429
           + L Y+I LASPI ++ ++A QRG
Sbjct: 439 ETLLYVILLASPILMVFIVAAQRG 462

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473415|ref|XP_003606992.1| hypothetical protein MTR_4g071010 [Medicago truncatula] gi|355508047|gb|AES89189.1| hypothetical protein MTR_4g071010 [Medicago truncatula]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/418 (57%), Positives = 307/418 (73%), Gaps = 22/418 (5%)

Query: 29  LSSLKLSFFLNATSNNDEASEQPISENSPEPEASLDPVKLAFEKAKAYRKLKESNSDSKY 88
           L + KL   +N   NN E+SE  ++    E  AS+DP+KLAF KAKAY++  +SN+D   
Sbjct: 27  LKTTKLCCVMN-KENNKESSE--VNSIEAEKTASVDPIKLAFNKAKAYKESIKSNTDLGI 83

Query: 89  EQNP----DKDVA---RAAVEKAKEYKKNKDTV------SFQNGTNSGEGRGNLPKEVGG 135
           EQN      KDV+   + A+EKAK+YK+NK           Q G+ S  G  N+      
Sbjct: 84  EQNSADGGKKDVSVSVKIAMEKAKKYKQNKGVAVSETDQGLQGGSESTWGE-NVNDNSVS 142

Query: 136 KKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTV 195
           KK  L +S IDF+GL FAD K+ +GLP GLVP +DPF++ D PEVE+IVGDT+ F  +T 
Sbjct: 143 KKGELSVSKIDFVGLGFADNKKTRGLPPGLVPFSDPFSDDDLPEVELIVGDTNNFNATTT 202

Query: 196 LRPGPKQ--EENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEER 253
             P P+Q  ++  E YKPKVSTWGVFPRP NISKT+GGGRTIRPG+VLE  E +AAKE R
Sbjct: 203 TAPQPEQTKDDESELYKPKVSTWGVFPRPNNISKTYGGGRTIRPGEVLENEEEKAAKEAR 262

Query: 254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL 313
           T+Q+LAAYKK  GL++DPKLK ECE+ALKDGD LMD+GKLK+ALP+YEKV++K+ FKSEL
Sbjct: 263 TKQMLAAYKKKYGLSIDPKLKIECEEALKDGDFLMDAGKLKDALPYYEKVIDKLPFKSEL 322

Query: 314 HGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSS- 372
           HGLAALQWSICQDSL R  EAR MYEKLQSHP+  V K+AR FM+SFQAMEMMKVR+ S 
Sbjct: 323 HGLAALQWSICQDSLSRHNEARSMYEKLQSHPSVKVGKKARHFMYSFQAMEMMKVRTRSS 382

Query: 373 --DKNTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQR 428
              KNT Y+++F+AF+E+K+NYP+++  ++E  L Q L Y++FL SPIFV+LL+AVQ+
Sbjct: 383 RYSKNTFYQSYFDAFIENKSNYPVKDEVAQESDLNQVLLYIVFLISPIFVVLLLAVQK 440

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20197392|gb|AAM15057.1| hypothetical protein [Arabidopsis thaliana] gi|51968582|dbj|BAD42983.1| hypothetical protein [Arabidopsis thaliana] gi|109134175|gb|ABG25085.1| At2g38780 [Arabidopsis thaliana]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/444 (56%), Positives = 310/444 (69%), Gaps = 27/444 (6%)

Query: 1   MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEPE 60
           MAS   SWLSS  T       S  Q PK  SLKLS F   ++++             E E
Sbjct: 1   MASFNHSWLSSPLTETPAFFFSPSQHPK--SLKLSLFRTRSNSSSPDRSS-------EVE 51

Query: 61  ASLDPVKLAFEKAKAYRKLKESNSDSKYEQNP-DKDV---ARAAVEKAKEYKKNK----D 112
             +DPVKLA +KA+AY+K K  +   K E+N  D+++    +AA++KA +YKK K    D
Sbjct: 52  LDVDPVKLALKKAEAYKKSK--SEQKKPEKNAGDEELPLSVKAAMQKANDYKKRKGLGTD 109

Query: 113 TVSFQNGTNSGEGRGNLPKEV----GGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPV 168
            V+    +N+ +    L  +V      KK+ LK+SSIDFMGL FADKK  +GLPAGLVPV
Sbjct: 110 AVAKAKPSNTDQSFVRLANKVVEDNDVKKKELKVSSIDFMGLGFADKKSTRGLPAGLVPV 169

Query: 169 TDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKT 228
            D   EGD PEVE IVGD ++F E  V     + + N + YKPKVSTWGVFPRP NISKT
Sbjct: 170 VDYLPEGDLPEVEFIVGDKTRFAEK-VKEVEQEGDGNSDVYKPKVSTWGVFPRPSNISKT 228

Query: 229 FGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLM 288
           FGGGRT+RPGD +ETAE R  +EE+T++LL AYK+S+GLN+DPKLK ECEKA+ +G+SLM
Sbjct: 229 FGGGRTLRPGDSVETAEERIVREEKTKKLLIAYKESLGLNIDPKLKLECEKAIDEGNSLM 288

Query: 289 DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNAL 348
           DSGKLKEALP+YEKVM K+VFKSELHGLAALQWSICQDSL +  +AR MYEKL SHPN  
Sbjct: 289 DSGKLKEALPYYEKVMEKIVFKSELHGLAALQWSICQDSLRKTDKARRMYEKLISHPNPG 348

Query: 349 VSKRARQFMFSFQAMEMMKVRSSS--DKNTDYRNFFEAFVEDKTNYPLQEAG-SEEGALT 405
           VSK+ARQFMFSFQAMEM+KV+ SS  + NT Y+++FEAFVEDKTNY  QE    EE  + 
Sbjct: 349 VSKKARQFMFSFQAMEMLKVKGSSFAEGNTGYQDYFEAFVEDKTNYKAQEEKEGEEMGIN 408

Query: 406 QALPYMIFLASPIFVILLIAVQRG 429
           + L Y+I LASPI ++ ++A QRG
Sbjct: 409 ETLLYVILLASPILMVFIVAAQRG 432

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823763|ref|XP_002879764.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297325603|gb|EFH56023.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 247/453 (54%), Positives = 316/453 (69%), Gaps = 40/453 (8%)

Query: 1   MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEPE 60
           MAS   SWLSS  T          Q+PK  SLKLS F   ++++ + S         E E
Sbjct: 25  MASFNHSWLSSPLTETPTCFLYPSQQPK--SLKLSLFRTRSNSSSDRSS--------EVE 74

Query: 61  ASLDPVKLAFEKAKAYRKLKESNSDSKYEQNP-DKDV---ARAAVEKAKEYKKNK----D 112
            ++DPVKLA +KA+AY+K K    +   EQN  D+++    +AA++KA +YKK K    D
Sbjct: 75  LAVDPVKLALKKAEAYKKSKSEGKER--EQNAGDEELPLSVKAAMQKANDYKKRKGLGTD 132

Query: 113 TV----------SFQNGTNSGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLP 162
            V          SF   +N       + ++   KK+ LK+SSIDFMGL FADKK  +GLP
Sbjct: 133 AVEEAKPSSTEQSFVRSSN------KVVEDNDVKKKELKVSSIDFMGLGFADKKSTRGLP 186

Query: 163 AGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRP 222
           AGLVP+ D   EGD PEVE IVGD ++F E  V     + + N + YKPKVSTWGVFPRP
Sbjct: 187 AGLVPIVDYLPEGDLPEVEFIVGDKTRFAEK-VKEVEQEGDGNSDVYKPKVSTWGVFPRP 245

Query: 223 GNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALK 282
            NISKTFGGGRT+RPGD +ETAE R  +EE+T++LL AYK+S+GLN+DPKLK ECEKA++
Sbjct: 246 SNISKTFGGGRTLRPGDSVETAEERIVREEQTKKLLIAYKESIGLNIDPKLKLECEKAIE 305

Query: 283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342
           +G+SLMDSGKLKEALP+YEKVM K+VFKSELHGLAALQWSICQDSL +  +AR MYEKL 
Sbjct: 306 EGNSLMDSGKLKEALPYYEKVMEKIVFKSELHGLAALQWSICQDSLRKTDKARRMYEKLI 365

Query: 343 SHPNALVSKRARQFMFSFQAMEMMKVRSSS--DKNTDYRNFFEAFVEDKTNYPLQEAGSE 400
           SHPN+ VSK+ARQFMFSFQAMEM+KV+ SS  D+NT Y+++FEAFV+DKT+Y  QE    
Sbjct: 366 SHPNSGVSKKARQFMFSFQAMEMLKVKGSSFIDENTGYQDYFEAFVKDKTDYQAQEEKEG 425

Query: 401 EG-ALTQALPYMIFLASPIFVILLIAVQRGSIN 432
           E   + + L Y+I LASPI ++ ++A QRG+++
Sbjct: 426 EAMGINETLLYVILLASPILMVFIVAAQRGNMH 458

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
TAIR|locus:2040369	465	AT2G38780 "AT2G38780" [Arabido	0.963	0.896	0.533	1.7e-107

TAIR|locus:2040369 AT2G38780 "AT2G38780" [Arabidopsis thaliana (taxid:3702)]

 Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
 Identities = 237/444 (53%), Positives = 292/444 (65%)

Query:     1 MASLQTSWLSSVSTIKNKNDXXXXXXXXXXXXXXXXXXNATSNNDEASEQPISENSPEPE 60
             MAS   SWLSS  T   +                       SN    S  P  + S E E
Sbjct:    31 MASFNHSWLSSPLT---ETPAFFFSPSQHPKSLKLSLFRTRSN----SSSP--DRSSEVE 81

Query:    61 ASLDPVKLAFEKAKAYRKLKESNSDSKYEQNP-DKDV---ARAAVEKAKEYKKNK----D 112
               +DPVKLA +KA+AY+K K  +   K E+N  D+++    +AA++KA +YKK K    D
Sbjct:    82 LDVDPVKLALKKAEAYKKSK--SEQKKPEKNAGDEELPLSVKAAMQKANDYKKRKGLGTD 139

Query:   113 TVSFQNGTNSGEGRGNLPKEV----GGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPV 168
              V+    +N+ +    L  +V      KK+ LK+SSIDFMGL FADKK  +GLPAGLVPV
Sbjct:   140 AVAKAKPSNTDQSFVRLANKVVEDNDVKKKELKVSSIDFMGLGFADKKSTRGLPAGLVPV 199

Query:   169 TDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKT 228
              D   EGD PEVE IVGD ++F E  V     + + N + YKPKVSTWGVFPRP NISKT
Sbjct:   200 VDYLPEGDLPEVEFIVGDKTRFAEK-VKEVEQEGDGNSDVYKPKVSTWGVFPRPSNISKT 258

Query:   229 FGGGRTIRPGDVLXXXXXXXXXXXXXXQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLM 288
             FGGGRT+RPGD +              +LL AYK+S+GLN+DPKLK ECEKA+ +G+SLM
Sbjct:   259 FGGGRTLRPGDSVETAEERIVREEKTKKLLIAYKESLGLNIDPKLKLECEKAIDEGNSLM 318

Query:   289 DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNAL 348
             DSGKLKEALP+YEKVM K+VFKSELHGLAALQWSICQDSL +  +AR MYEKL SHPN  
Sbjct:   319 DSGKLKEALPYYEKVMEKIVFKSELHGLAALQWSICQDSLRKTDKARRMYEKLISHPNPG 378

Query:   349 VSKRARQFMFSFQAMEMMKVRSSS--DKNTDYRNFFEAFVEDKTNYPLQEAGS-EEGALT 405
             VSK+ARQFMFSFQAMEM+KV+ SS  + NT Y+++FEAFVEDKTNY  QE    EE  + 
Sbjct:   379 VSKKARQFMFSFQAMEMLKVKGSSFAEGNTGYQDYFEAFVEDKTNYKAQEEKEGEEMGIN 438

Query:   406 QALPYMIFLASPIFVILLIAVQRG 429
             + L Y+I LASPI ++ ++A QRG
Sbjct:   439 ETLLYVILLASPILMVFIVAAQRG 462


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.130   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      433       401   0.00098  117 3  11 23  0.48    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  236 KB (2128 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  40.86u 0.16s 41.02t   Elapsed:  00:00:02
  Total cpu time:  40.86u 0.16s 41.02t   Elapsed:  00:00:02
  Start:  Tue May 21 01:30:05 2013   End:  Tue May 21 01:30:07 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	433
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.16
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.01
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.88
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.82
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.79
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.65
PRK10803	263	tol-pal system protein YbgF; Provisional	97.64
PF13512	142	TPR_18: Tetratricopeptide repeat	97.46
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.44
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.32
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.32
PF12688	120	TPR_5: Tetratrico peptide repeat	97.26
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.18
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.18
PF13371	73	TPR_9: Tetratricopeptide repeat	97.12
PRK15359	144	type III secretion system chaperone protein SscB;	97.06
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.03
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.02
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.9
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.77
PF12688	120	TPR_5: Tetratrico peptide repeat	96.63
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.62
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.6
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.57
PRK15359	144	type III secretion system chaperone protein SscB;	96.56
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.52
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.47
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.39
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.35
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.31
KOG0553	304	consensus TPR repeat-containing protein [General f	96.23
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.19
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.15
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.14
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.11
PRK10803	263	tol-pal system protein YbgF; Provisional	96.1
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.09
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.08
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	95.99
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	95.93
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	95.87
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	95.59
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	95.57
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.57
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	95.5
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	95.46
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.37
PRK11788	389	tetratricopeptide repeat protein; Provisional	95.23
PRK11189	296	lipoprotein NlpI; Provisional	95.02
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	94.97
PRK12370	553	invasion protein regulator; Provisional	94.96
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	94.8
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.78
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	94.77
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	94.76
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	94.44
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	94.43
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	94.42
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	94.41
PRK12370	553	invasion protein regulator; Provisional	94.38
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	94.33
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	93.92
PF13428	44	TPR_14: Tetratricopeptide repeat	93.9
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	93.86
PRK11788	389	tetratricopeptide repeat protein; Provisional	93.83
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	93.67
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	93.54
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	93.42
PRK15331	165	chaperone protein SicA; Provisional	93.33
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	93.32
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	92.72
KOG0547	606	consensus Translocase of outer mitochondrial membr	92.57
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	92.46
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	92.43
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	92.22
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.04
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	91.96
KOG4234	271	consensus TPR repeat-containing protein [General f	91.85
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	91.79
PRK11189	296	lipoprotein NlpI; Provisional	91.73
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	91.69
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	91.58
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	91.43
COG4105	254	ComL DNA uptake lipoprotein [General function pred	91.41
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	91.02
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	90.93
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	90.69
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	90.61
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	90.15
PRK14574	822	hmsH outer membrane protein; Provisional	90.14
KOG4648	536	consensus Uncharacterized conserved protein, conta	89.57
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	89.23
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	88.88
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	88.7
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	87.96
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	87.96
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	87.64
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	87.28
PF03745	62	DUF309: Domain of unknown function (DUF309); Inter	86.77
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	86.62
COG4700	251	Uncharacterized protein conserved in bacteria cont	86.51
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	86.32
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	86.04
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	85.96
PF03704	146	BTAD: Bacterial transcriptional activator domain;	85.74
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	85.09
KOG2076	895	consensus RNA polymerase III transcription factor	84.79
PRK14574	822	hmsH outer membrane protein; Provisional	84.78
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	84.67
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	84.3
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	84.16
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	83.88
PF13428	44	TPR_14: Tetratricopeptide repeat	81.93
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	81.85
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	81.46
PRK14720	906	transcript cleavage factor/unknown domain fusion p	81.28
COG0457	291	NrfG FOG: TPR repeat [General function prediction	81.02
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	80.49
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	80.18

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.16  E-value=8.4e-06  Score=60.41  Aligned_cols=62  Identities=19%  Similarity=0.161  Sum_probs=55.3

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          281 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       281 ~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      |..|..+++.|+|.+|+..|+.++..-+.    ..++.++|+.||...|+.++|+.+|+++. ..|+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPD----NPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTT----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            67899999999999999999999988854    78999999999999999999999999984 5664

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.01  E-value=2.1e-05  Score=58.22  Aligned_cols=60  Identities=23%  Similarity=0.299  Sum_probs=52.1

Q ss_pred             HHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC-HHHH
Q 013954          287 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN-ALVS  350 (433)
Q Consensus       287 amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~-~eVr  350 (433)
                      ||+.|+|.+|+.+|+++++.-|.    ..++.+.|+.||-..|+.++|+.+++++. .+|+ +.+.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~   62 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPD----NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ   62 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTT----SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            68999999999999999999876    45788899999999999999999999996 7888 4443

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.88  E-value=0.00012  Score=57.53  Aligned_cols=77  Identities=17%  Similarity=0.163  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR  354 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk  354 (433)
                      .+..+..|..++..|+|.+|+.+|+.++..-+... .-..+.+.++.||...|+.++|+.+|+++. .+|+.....+|.
T Consensus        39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  116 (119)
T TIGR02795        39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP-KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ  116 (119)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC-cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence            34466778888888888888888888776654332 224556677777788888888888888774 577777766663

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.82  E-value=0.00011  Score=66.94  Aligned_cols=77  Identities=21%  Similarity=0.254  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHH
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRA  353 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQA  353 (433)
                      ..+..|+.|..+|+.|+|.+|+..|+++.+.-| .|.+...+++|++.||-..|+.++|+..|+++. .||+..-...|
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A   81 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA   81 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence            356799999999999999999999999998865 488999999999999999999999999999974 79987643333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.79  E-value=0.00018  Score=56.49  Aligned_cols=70  Identities=13%  Similarity=0.110  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      .+..|..|..++..|+|.+|+.+|++++..-+ .+...-.+.++++.||...|+.++|+.+|+++. .+|+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYP-KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS   72 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence            35679999999999999999999999987754 334456889999999999999999999999986 46763

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.65  E-value=0.00016  Score=53.79  Aligned_cols=62  Identities=21%  Similarity=0.206  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC-ChHHHHHHHHHHh
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH-RPKEARIMYEKLQ  342 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G-R~~EAiaLYkkL~  342 (433)
                      ++..+..|..++..|+|.+|+.+|++|++.-+.    ...+..+++.||...| +.++|+..|++..
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~----~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN----NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            456788999999999999999999999998754    4568899999999999 7999999999864

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.64  E-value=0.00041  Score=67.28  Aligned_cols=102  Identities=17%  Similarity=0.216  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChH
Q 013954          253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK  332 (433)
Q Consensus       253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~  332 (433)
                      +..+.+.+|++=+  ...|.-.......|..|..++..|+|.+|+.+|+++++.-+ .+..-.++-+.++.||...|+.+
T Consensus       158 ~y~~Ai~af~~fl--~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~klg~~~~~~g~~~  234 (263)
T PRK10803        158 RQDDAIVAFQNFV--KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFKVGVIMQDKGDTA  234 (263)
T ss_pred             CHHHHHHHHHHHH--HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHHHHHHHHHcCCHH
Confidence            3444444443222  22355444445679999999999999999999999998875 56777889999999999999999


Q ss_pred             HHHHHHHHHh-cCCCHHHHHHHHHHh
Q 013954          333 EARIMYEKLQ-SHPNALVSKRARQFM  357 (433)
Q Consensus       333 EAiaLYkkL~-sHP~~eVrKQAkrLl  357 (433)
                      +|+.+|+++. .||+..-.++|++.|
T Consensus       235 ~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        235 KAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             HHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            9999999996 799999999998776

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.46  E-value=0.00051  Score=62.36  Aligned_cols=71  Identities=18%  Similarity=0.256  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  348 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  348 (433)
                      .++.|+.|+.+|+.|+|.+|+..||.+.+.-|+ ++..-.++|||+-||=..++.++|++-|++.. -||.-.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp   81 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP   81 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence            356899999999999999999999999998877 47788999999999999999999999999996 476544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.44  E-value=0.00062  Score=51.96  Aligned_cols=65  Identities=22%  Similarity=0.208  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh---HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      +......|..++..|+|.+|+.+|++|++....-..-+   +.+-..++.||...|+.++|+.+|++.
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34456789999999999999999999998742211122   566667999999999999999999985

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.32  E-value=0.0044  Score=53.20  Aligned_cols=75  Identities=20%  Similarity=0.160  Sum_probs=62.3

Q ss_pred             cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 013954          271 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPN  346 (433)
Q Consensus       271 p~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~  346 (433)
                      |...-.....|..++.+|+.|+|.+|+..|+++++.. ....+.-.+.+.||.||-..|+.++|+.+++++..++.
T Consensus        42 ~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~  116 (145)
T PF09976_consen   42 PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF  116 (145)
T ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch
Confidence            3444455668888999999999999999999999977 55588889999999999999999999999988654443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.32  E-value=0.00095  Score=63.52  Aligned_cols=72  Identities=11%  Similarity=0.068  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  348 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  348 (433)
                      ..++.|..|..+|+.|+|.+|+..||++.+.-+ .|.+.-.+.+|++.||=..++.++|+..|++.. .||+-.
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~  103 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP  103 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence            455689999999999999999999999998666 558888899999999999999999999999995 677664

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.26  E-value=0.0015  Score=57.02  Aligned_cols=74  Identities=19%  Similarity=0.209  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR  354 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk  354 (433)
                      .|+.+..+...|+..+|+++|++|+.. .......-.+.|+|+.+|..+||.++|+++-++.. .||..+.....+
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~   78 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR   78 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence            567777777888888888888888774 23333444677788888888888888888888875 578766655444

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.18  E-value=0.0029  Score=51.93  Aligned_cols=76  Identities=14%  Similarity=-0.006  Sum_probs=57.7

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH----HHHHH
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV----SKRAR  354 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV----rKQAk  354 (433)
                      .+..|..++..|++.+|+..|+.+++.-+.    ...+...+++||...|+.++|+..|++.. .+|+...    .+++.
T Consensus        54 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  129 (135)
T TIGR02552        54 WLGLAACCQMLKEYEEAIDAYALAAALDPD----DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAE  129 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            456688888889999999999988776543    35666888899999999999999998885 5666544    55566


Q ss_pred             HHhhH
Q 013954          355 QFMFS  359 (433)
Q Consensus       355 rLlyi  359 (433)
                      .+++.
T Consensus       130 ~~~~~  134 (135)
T TIGR02552       130 AMLES  134 (135)
T ss_pred             HHHhc
Confidence            66554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.18  E-value=0.0014  Score=58.94  Aligned_cols=77  Identities=21%  Similarity=0.248  Sum_probs=64.3

Q ss_pred             cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013954          271 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  348 (433)
Q Consensus       271 p~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  348 (433)
                      |.-....+..|..|..++..|+|.+|+..|++++..-+ .+...-.+.+.++.||.+.|+.++|+..|+++. .||+..
T Consensus        27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~  104 (235)
T TIGR03302        27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP  104 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            33445666789999999999999999999999988765 344566788999999999999999999999995 677544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.12  E-value=0.0027  Score=47.58  Aligned_cols=70  Identities=20%  Similarity=0.162  Sum_probs=58.9

Q ss_pred             HHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHh
Q 013954          284 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFM  357 (433)
Q Consensus       284 Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLl  357 (433)
                      ...++.+++|.+|+..++.++..-|...    ...+.+++||-..|+.++|+..+++.. .+|+.....+++++|
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDP----ELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccc----hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            3568999999999999999999976633    344558999999999999999999985 799888888877765

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.06  E-value=0.0056  Score=53.28  Aligned_cols=99  Identities=13%  Similarity=0.138  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954          250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  329 (433)
Q Consensus       250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  329 (433)
                      ...+..+.+..|+.-  +.++|..-   +..+..|..++..|+|.+|+..|+.|+.+-+.    ...+...|+.||...|
T Consensus        36 ~~g~~~~A~~~~~~a--l~~~P~~~---~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~----~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         36 QEGDYSRAVIDFSWL--VMAQPWSW---RAHIALAGTWMMLKEYTTAINFYGHALMLDAS----HPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HcCCHHHHHHHHHHH--HHcCCCcH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHcC
Confidence            344455566666654  35556543   33577899999999999999999999986543    4677888999999999


Q ss_pred             ChHHHHHHHHHHh-cCCCH----HHHHHHHHHh
Q 013954          330 RPKEARIMYEKLQ-SHPNA----LVSKRARQFM  357 (433)
Q Consensus       330 R~~EAiaLYkkL~-sHP~~----eVrKQAkrLl  357 (433)
                      |.++|+..|++.. ..|+-    .++.++++++
T Consensus       107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            9999999999975 45544    5666666554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.03  E-value=0.0023  Score=44.71  Aligned_cols=64  Identities=27%  Similarity=0.258  Sum_probs=50.4

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      .+..|..++..|++.+|+..|+.++...+...    .+.++++.||-..++.++|+.+|+++. .+|..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   67 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN   67 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            46678888889999999999999887765443    677888888988899999999998874 44443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.02  E-value=0.0072  Score=54.43  Aligned_cols=65  Identities=15%  Similarity=0.024  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  345 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  345 (433)
                      .+..|..++.+|+|.+|+..|+.+++..+. +...-++.+.++.+|..+|+.++|+.++++|. +||
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            357789999999999999999999988765 34556888999999999999999999999996 677

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.90  E-value=0.011  Score=41.37  Aligned_cols=84  Identities=25%  Similarity=0.268  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChH
Q 013954          253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK  332 (433)
Q Consensus       253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~  332 (433)
                      +..+.+..+++-.  .+.|...   ...+..|..++..|++.+|+.+|+.++...+...    .+...++.+|...|+.+
T Consensus        15 ~~~~A~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   85 (100)
T cd00189          15 DYDEALEYYEKAL--ELDPDNA---DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA----KAYYNLGLAYYKLGKYE   85 (100)
T ss_pred             cHHHHHHHHHHHH--hcCCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch----hHHHHHHHHHHHHHhHH
Confidence            3444444454433  2333332   4467789999999999999999999998765544    77788999999999999


Q ss_pred             HHHHHHHHHh-cCC
Q 013954          333 EARIMYEKLQ-SHP  345 (433)
Q Consensus       333 EAiaLYkkL~-sHP  345 (433)
                      +|+..++++. .+|
T Consensus        86 ~a~~~~~~~~~~~~   99 (100)
T cd00189          86 EALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHccCC
Confidence            9999999985 455

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.77  E-value=0.0029  Score=49.45  Aligned_cols=50  Identities=20%  Similarity=0.293  Sum_probs=26.9

Q ss_pred             CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          290 SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       290 rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      .|+|+.|+.+||++.+.-+.++  -..+.+++|.||=..|+.++|+.+++++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~~   51 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQKL   51 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHCH
T ss_pred             CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            4556666666666555555432  3334444466666666666666666553

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.63  E-value=0.016  Score=50.72  Aligned_cols=85  Identities=18%  Similarity=0.271  Sum_probs=68.0

Q ss_pred             HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHH
Q 013954          255 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA  334 (433)
Q Consensus       255 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA  334 (433)
                      .+.+.-|++-.-..++..  ...+..+..|..+..-|+|.+|+..|++++...+. ..+.+.++..+|+|+-+.||++||
T Consensus        18 ~~Ai~~Y~~Al~~gL~~~--~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~-~~~~~~l~~f~Al~L~~~gr~~eA   94 (120)
T PF12688_consen   18 EEAIPLYRRALAAGLSGA--DRRRALIQLASTLRNLGRYDEALALLEEALEEFPD-DELNAALRVFLALALYNLGRPKEA   94 (120)
T ss_pred             HHHHHHHHHHHHcCCCch--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHHCCCHHHH
Confidence            455667776655555544  33457889999999999999999999999886643 457888999999999999999999


Q ss_pred             HHHHHHHh
Q 013954          335 RIMYEKLQ  342 (433)
Q Consensus       335 iaLYkkL~  342 (433)
                      +.+.-.+.
T Consensus        95 l~~~l~~l  102 (120)
T PF12688_consen   95 LEWLLEAL  102 (120)
T ss_pred             HHHHHHHH
Confidence            99987653

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.62  E-value=0.0067  Score=65.96  Aligned_cols=82  Identities=20%  Similarity=0.190  Sum_probs=64.4

Q ss_pred             CCCCcchH-HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh-----------HHHHHHHHHHHHhcCChHHH
Q 013954          267 LNVDPKLK-SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-----------GLAALQWSICQDSLHRPKEA  334 (433)
Q Consensus       267 l~Vdp~~k-~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG-----------GeaqLwLAiAydA~GR~~EA  334 (433)
                      +..-|++- ..-+..|..+-.+.++|+|.+|++.||+|+..|-..-..+           --+.+|||-+|+-+|+++||
T Consensus       164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea  243 (652)
T KOG2376|consen  164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA  243 (652)
T ss_pred             HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            34445533 3667899999999999999999999999977664443333           25678999999999999999


Q ss_pred             HHHHHHHhcCCCHH
Q 013954          335 RIMYEKLQSHPNAL  348 (433)
Q Consensus       335 iaLYkkL~sHP~~e  348 (433)
                      .++|..+.+|-..+
T Consensus       244 ~~iy~~~i~~~~~D  257 (652)
T KOG2376|consen  244 SSIYVDIIKRNPAD  257 (652)
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999998654444

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.60  E-value=0.014  Score=58.19  Aligned_cols=105  Identities=16%  Similarity=0.159  Sum_probs=81.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHH
Q 013954          243 TAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWS  322 (433)
Q Consensus       243 teEEkaaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLA  322 (433)
                      .+-..+-+..+..+.+..|++-+  .++|.   .....+..|..++..|+|.+|+..|++|+.+-+.    ...+.+.++
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al--~~~P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~----~~~a~~~lg   77 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAI--DLDPN---NAELYADRAQANIKLGNFTEAVADANKAIELDPS----LAKAYLRKG   77 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH--HhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----CHHHHHHHH
Confidence            44455777888889999998665  45554   2566788899999999999999999999998653    467889999


Q ss_pred             HHHHhcCChHHHHHHHHHHh-cCCC-HHHHHHHHHH
Q 013954          323 ICQDSLHRPKEARIMYEKLQ-SHPN-ALVSKRARQF  356 (433)
Q Consensus       323 iAydA~GR~~EAiaLYkkL~-sHP~-~eVrKQAkrL  356 (433)
                      .||..+|+.++|+..|+++. .+|+ ..+...-+++
T Consensus        78 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         78 TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999985 5665 4444443333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.57  E-value=0.011  Score=58.92  Aligned_cols=64  Identities=11%  Similarity=0.010  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  345 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  345 (433)
                      .+.+..|..+|..|+|.+|+++|++|+.+-+...    .+.+.++.||..+|+.++|+..|+++. ..|
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~----~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P   67 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA----ELYADRAQANIKLGNFTEAVADANKAIELDP   67 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            4577889999999999999999999999877653    567889999999999999999999996 455

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=96.56  E-value=0.0059  Score=53.14  Aligned_cols=63  Identities=11%  Similarity=0.016  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      .+..|..++..|+|.+|+.+|..++..=+..    ..+.+.++.|+...||.++|+..|++.. -.|.
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS----WRAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            4567999999999999999999998876554    4667889999999999999999999985 4553

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.52  E-value=0.052  Score=46.09  Aligned_cols=106  Identities=17%  Similarity=0.221  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCc-----chHHHHHHHH-----HHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHH
Q 013954          248 AAKEERTRQLLAAYKKSVGLNVDP-----KLKSECEKAL-----KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLA  317 (433)
Q Consensus       248 aaRe~rtke~LaaYrk~~Gl~Vdp-----~~k~e~eea~-----~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGea  317 (433)
                      ..+....++.|+-|+...=-+++.     .....+++.+     +.+..+.+.|++.+|+..++.++..=|.+-    .+
T Consensus        23 ~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E----~~   98 (146)
T PF03704_consen   23 EEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDE----EA   98 (146)
T ss_dssp             HHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H----HH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH----HH
Confidence            445566778888888776555444     1223333322     336678889999999999999999987654    55


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHh--------cCCCHHHHHHHHHHh
Q 013954          318 ALQWSICQDSLHRPKEARIMYEKLQ--------SHPNALVSKRARQFM  357 (433)
Q Consensus       318 qLwLAiAydA~GR~~EAiaLYkkL~--------sHP~~eVrKQAkrLl  357 (433)
                      ..+|..||-+.||+.+|+..|++++        ..|+++++.-.++||
T Consensus        99 ~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~il  146 (146)
T PF03704_consen   99 YRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYREIL  146 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHhC
Confidence            6678899999999999999999884        358888888777664

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.47  E-value=0.006  Score=47.69  Aligned_cols=60  Identities=20%  Similarity=0.149  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK  340 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk  340 (433)
                      ...-.|..|..+|..|+|.+|++.|++  ..+..   -.-.+.+.+|.||-.+|+.+|||..+++
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~--~~~~~---~~~~~~~l~a~~~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK--LKLDP---SNPDIHYLLARCLLKLGKYEEAIKALEK   83 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC--HTHHH---CHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH--hCCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            334567789999999999999999988  22222   2256777789999999999999999976

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.39  E-value=0.024  Score=49.48  Aligned_cols=74  Identities=19%  Similarity=0.109  Sum_probs=60.1

Q ss_pred             hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          273 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       273 ~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      ...++...+..|..++..|+|.+|+.+|++|+...+. +..-..+...+++||...|++++|+..|++.. .+|..
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~  105 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL  105 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence            3456777889999999999999999999999987542 32234577789999999999999999999975 45654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.35  E-value=0.055  Score=57.37  Aligned_cols=67  Identities=22%  Similarity=0.230  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSH  344 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sH  344 (433)
                      ++..+..|..++..|+|.+|+..|++|+++-+-.-. .-.+..+++.||-.+|+.+||++.|++-...
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344788899999999999999999999999764311 1134789999999999999999999998654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.31  E-value=0.041  Score=52.03  Aligned_cols=65  Identities=17%  Similarity=0.109  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .-....|..+++.|++.+|+.+|++++...+....+.....+.++.+|-..|+.++|+.+|+++.
T Consensus       149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~  213 (355)
T cd05804         149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI  213 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            34566799999999999999999999998876556666667779999999999999999999974

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.23  E-value=0.04  Score=55.82  Aligned_cols=81  Identities=20%  Similarity=0.178  Sum_probs=61.1

Q ss_pred             chHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh------------------------------HHHHHHH
Q 013954          272 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------------------------GLAALQW  321 (433)
Q Consensus       272 ~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG------------------------------GeaqLwL  321 (433)
                      +.++.+++.=.+|..+|+.++|++||..|.+|+.+.|.+-.+.                              -++-.-|
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            4778888888889999999999999999999999987764443                              1333346


Q ss_pred             HHHHHhcCChHHHHHHHHHH-hcCCCHHHHHH
Q 013954          322 SICQDSLHRPKEARIMYEKL-QSHPNALVSKR  352 (433)
Q Consensus       322 AiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQ  352 (433)
                      -+||=+.|++++|+.-|+|- .--|+-++=|.
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~  187 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDNESYKS  187 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCcHHHHH
Confidence            67777788888888777774 46777765554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.19  E-value=0.0061  Score=39.38  Aligned_cols=31  Identities=23%  Similarity=0.251  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          316 LAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       316 eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      ++.++++.||...|+.++|+..|++|. .||+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            478899999999999999999999996 7886

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.15  E-value=0.063  Score=47.27  Aligned_cols=72  Identities=21%  Similarity=0.158  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      ..+...+..|..++..|+|.+|+.+|++|++.-+... -.+.+...++.||...|+.++|+..|++.. .||+-
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  105 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ  105 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            5556678999999999999999999999987643321 135688889999999999999999999985 57754

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.14  E-value=0.048  Score=44.78  Aligned_cols=73  Identities=21%  Similarity=0.258  Sum_probs=59.8

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013954          267 LNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  345 (433)
Q Consensus       267 l~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  345 (433)
                      +.++|+..   ...+..|..++..|+|.+|+..|+++.+.-+..    ..+...++.||-..|++++|+.+|+++. .+|
T Consensus        10 l~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552        10 LGLDSEQL---EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN----SRYWLGLAACCQMLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             HcCChhhH---HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            34556543   447889999999999999999999998876543    4677789999999999999999999995 566


Q ss_pred             C
Q 013954          346 N  346 (433)
Q Consensus       346 ~  346 (433)
                      .
T Consensus        83 ~   83 (135)
T TIGR02552        83 D   83 (135)
T ss_pred             C
Confidence            4

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.11  E-value=0.017  Score=63.47  Aligned_cols=70  Identities=17%  Similarity=0.202  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh------------------------------HHHHHHHHHHHH
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------------------------GLAALQWSICQD  326 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG------------------------------GeaqLwLAiAyd  326 (433)
                      .+..+-.|..++.+|.|.+|..+|+.++++.|-.....                              ..+++.+|+|++
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~  165 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD  165 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            34456667777888888888888888777776655332                              578889999999


Q ss_pred             hcCChHHHHHHHHHHh-cCCC
Q 013954          327 SLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       327 A~GR~~EAiaLYkkL~-sHP~  346 (433)
                      .+|+++||+++|+++. .||+
T Consensus       166 ~~g~~~~A~~~y~~~~~~~p~  186 (694)
T PRK15179        166 EIGQSEQADACFERLSRQHPE  186 (694)
T ss_pred             HhcchHHHHHHHHHHHhcCCC
Confidence            9999999999999997 6776

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.10  E-value=0.031  Score=54.45  Aligned_cols=71  Identities=11%  Similarity=0.143  Sum_probs=61.1

Q ss_pred             HHHHHHHHHH-HhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013954          278 EKALKDGDSL-MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV  349 (433)
Q Consensus       278 eea~~~Gk~a-merGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV  349 (433)
                      +..|..+..+ +..|+|.+|+..|++.++.-| +|.+-..+.+||+.+|-..|+.++|+..|+++. .||.-.-
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP-~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~  215 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYP-DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK  215 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence            4467788776 778999999999999998886 466778999999999999999999999999996 6886543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.09  E-value=0.067  Score=49.34  Aligned_cols=79  Identities=13%  Similarity=0.094  Sum_probs=45.2

Q ss_pred             HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHH-HhcCC--
Q 013954          254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQ-DSLHR--  330 (433)
Q Consensus       254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAy-dA~GR--  330 (433)
                      ..+.+..++...  ..+|..-+   .-+..|..++..|+|.+|+..|++|+.+-+.+.    .+.+.+|+|+ ...|+  
T Consensus        55 ~~~~i~~l~~~L--~~~P~~~~---~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~----~~~~~lA~aL~~~~g~~~  125 (198)
T PRK10370         55 PEAQLQALQDKI--RANPQNSE---QWALLGEYYLWRNDYDNALLAYRQALQLRGENA----ELYAALATVLYYQAGQHM  125 (198)
T ss_pred             HHHHHHHHHHHH--HHCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCCCC
Confidence            345555665444  33344332   345567777788888888888888777766543    3334445542 44555  


Q ss_pred             hHHHHHHHHHH
Q 013954          331 PKEARIMYEKL  341 (433)
Q Consensus       331 ~~EAiaLYkkL  341 (433)
                      .++|+.++++.
T Consensus       126 ~~~A~~~l~~a  136 (198)
T PRK10370        126 TPQTREMIDKA  136 (198)
T ss_pred             cHHHHHHHHHH
Confidence            35555555555

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.08  E-value=0.02  Score=59.97  Aligned_cols=59  Identities=8%  Similarity=-0.100  Sum_probs=34.8

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      -+..|..++..|+|.+|++.+++|+++-+..    -.+...++.||..+|+.++|+.-|.++.
T Consensus       163 ~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~----~~a~~~~a~a~~~lg~~~eA~~~~~~~~  221 (615)
T TIGR00990       163 YSNRAACHNALGDWEKVVEDTTAALELDPDY----SKALNRRANAYDGLGKYADALLDLTASC  221 (615)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445566666666666666666666654332    2445556666666666666666665553

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=95.99  E-value=0.044  Score=46.11  Aligned_cols=85  Identities=13%  Similarity=0.097  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954          252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  331 (433)
Q Consensus       252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  331 (433)
                      .+..+.+..+.+-.  ..+|.   .....+..|..++..|++.+|+.+|+++++.-+.    .+.+...++.+|-..|+.
T Consensus        45 ~~~~~A~~~~~~~l--~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~g~~  115 (234)
T TIGR02521        45 GDLEVAKENLDKAL--EHDPD---DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN----NGDVLNNYGTFLCQQGKY  115 (234)
T ss_pred             CCHHHHHHHHHHHH--HhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcccH
Confidence            34455555555443  23332   2344556688888999999999999998887543    345777888899999999


Q ss_pred             HHHHHHHHHHhcCC
Q 013954          332 KEARIMYEKLQSHP  345 (433)
Q Consensus       332 ~EAiaLYkkL~sHP  345 (433)
                      ++|+.+|++...++
T Consensus       116 ~~A~~~~~~~~~~~  129 (234)
T TIGR02521       116 EQAMQQFEQAIEDP  129 (234)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999987543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=95.93  E-value=0.046  Score=60.12  Aligned_cols=102  Identities=11%  Similarity=0.038  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh
Q 013954          248 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  327 (433)
Q Consensus       248 aaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  327 (433)
                      ..|..+..+.|..++.-.  ..+|..   ....+..|..+.+-|+|.+|++.|++++..-+    ---.+.++|+.+|.-
T Consensus       130 L~~~~~~eeA~~~~~~~l--~~~p~~---~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p----~~~~~~~~~a~~l~~  200 (694)
T PRK15179        130 VKRQQGIEAGRAEIELYF--SGGSSS---AREILLEAKSWDEIGQSEQADACFERLSRQHP----EFENGYVGWAQSLTR  200 (694)
T ss_pred             HHHhccHHHHHHHHHHHh--hcCCCC---HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHH
Confidence            345666677777776444  444443   33477889999999999999999999998322    224788999999999


Q ss_pred             cCChHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 013954          328 LHRPKEARIMYEKLQSHPNALVSKRARQFMF  358 (433)
Q Consensus       328 ~GR~~EAiaLYkkL~sHP~~eVrKQAkrLly  358 (433)
                      .|+.++|.+.|++..-+-...++|-++.+.-
T Consensus       201 ~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  231 (694)
T PRK15179        201 RGALWRARDVLQAGLDAIGDGARKLTRRLVD  231 (694)
T ss_pred             cCCHHHHHHHHHHHHHhhCcchHHHHHHHHH
Confidence            9999999999999987666677776766543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=95.87  E-value=0.11  Score=44.72  Aligned_cols=80  Identities=20%  Similarity=0.162  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHH
Q 013954          274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKR  352 (433)
Q Consensus       274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQ  352 (433)
                      ..++...|+....++..|.+..+-..++..... ..+|.....+.|.+|.++-..|+.++|+..|+++. .+|++.++..
T Consensus         8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~   86 (145)
T PF09976_consen    8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKD-YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL   86 (145)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence            456778899999999999999998888887775 56677999999999999999999999999999996 5688888877


Q ss_pred             HH
Q 013954          353 AR  354 (433)
Q Consensus       353 Ak  354 (433)
                      |+
T Consensus        87 a~   88 (145)
T PF09976_consen   87 AR   88 (145)
T ss_pred             HH
Confidence            74

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=95.59  E-value=0.11  Score=52.83  Aligned_cols=87  Identities=16%  Similarity=0.151  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954          252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  331 (433)
Q Consensus       252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  331 (433)
                      .+..+.+..|++-..+.-++      ...+..+..+...|++.+|+..|+++++..+..    -.+...++.+|...|+.
T Consensus       717 g~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~  786 (899)
T TIGR02917       717 KDYPAAIQAYRKALKRAPSS------QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND----AVLRTALAELYLAQKDY  786 (899)
T ss_pred             CCHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCcCH
Confidence            34445555555544333222      234556777788888888888888887776543    36777888888888888


Q ss_pred             HHHHHHHHHHh-cCCCHH
Q 013954          332 KEARIMYEKLQ-SHPNAL  348 (433)
Q Consensus       332 ~EAiaLYkkL~-sHP~~e  348 (433)
                      ++|+.+|+++. .+|+..
T Consensus       787 ~~A~~~~~~~~~~~p~~~  804 (899)
T TIGR02917       787 DKAIKHYRTVVKKAPDNA  804 (899)
T ss_pred             HHHHHHHHHHHHhCCCCH
Confidence            88888888884 677643

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=95.57  E-value=0.12  Score=43.45  Aligned_cols=62  Identities=15%  Similarity=0.131  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS  343 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  343 (433)
                      ...+..|..++..|++.+|+.+|++++...+..    ..+.+.++.+|...|+.++|+.++++...
T Consensus       136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~  197 (234)
T TIGR02521       136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQR----PESLLELAELYYLRGQYKDARAYLERYQQ  197 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345667889999999999999999998876543    45677889999999999999999998864

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.57  E-value=0.041  Score=50.95  Aligned_cols=65  Identities=11%  Similarity=0.107  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .+..+..|.-|-.+|+.|+|.+|...|+..+..=+-+.+    --+-|++|+++.|+.++||..|.+..
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~----y~~gLG~~~Q~~g~~~~AI~aY~~A~   96 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD----YWFRLGECCQAQKHWGEAIYAYGRAA   96 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            455667999999999999999999999998776655443    35679999999999999999999874

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=95.50  E-value=0.3  Score=46.68  Aligned_cols=142  Identities=13%  Similarity=0.079  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC-
Q 013954          252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR-  330 (433)
Q Consensus       252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR-  330 (433)
                      .+..+.+..|++=.  +..|......+..|..|..+|..|+|.+|+.+|+..+..-|..... ..|...+++|+..+++ 
T Consensus        46 g~y~~Ai~~f~~l~--~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~~~~~  122 (243)
T PRK10866         46 GNWKQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMALDDS  122 (243)
T ss_pred             CCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhhcchh
Confidence            34445555555433  3456666666668999999999999999999999999988777655 7888899999766652 


Q ss_pred             -----------------hHHHHHHHHHHh-cCCCHHHHHHHHHHhhHHH---HHHhhhhcccCCCCcchHHHHHHhhccc
Q 013954          331 -----------------PKEARIMYEKLQ-SHPNALVSKRARQFMFSFQ---AMEMMKVRSSSDKNTDYRNFFEAFVEDK  389 (433)
Q Consensus       331 -----------------~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiLE---Ap~llKv~~~~~~~t~Yd~Yf~af~~~k  389 (433)
                                       ..+|+..+++|. .||+-+-...|++.|--+.   |-.=+-|...|.+...|..=...|..==
T Consensus       123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~  202 (243)
T PRK10866        123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQML  202 (243)
T ss_pred             hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence                             368999999996 8999999999987665554   2222345555666556643222222223


Q ss_pred             ccccCcc
Q 013954          390 TNYPLQE  396 (433)
Q Consensus       390 ~~y~~~e  396 (433)
                      .+||.+.
T Consensus       203 ~~Yp~t~  209 (243)
T PRK10866        203 RDYPDTQ  209 (243)
T ss_pred             HHCCCCc
Confidence            4566554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=95.46  E-value=0.062  Score=56.39  Aligned_cols=63  Identities=11%  Similarity=0.071  Sum_probs=41.7

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      .+..|..++..|+|.+|+..|++|+++-+.+    ..+.++|+.+|...|+.++|+.+|++.. .+|+
T Consensus       402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~  465 (615)
T TIGR00990       402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF----IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE  465 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCccC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            4455677777777777777777777665433    2445567777777777777777777653 4554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.37  E-value=0.056  Score=51.78  Aligned_cols=82  Identities=17%  Similarity=0.223  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHhC-CchhhhhhHHHHHHhhccc--ccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc--CCCHHHHH
Q 013954          277 CEKALKDGDSLMDS-GKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKLQS--HPNALVSK  351 (433)
Q Consensus       277 ~eea~~~Gk~amer-GkYreAV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s--HP~~eVrK  351 (433)
                      ++...+.|..+.+. |+|.+|+++|++|++....  .+.....+.+++|.+|-.+|+.++|+.+|+++..  .-+...+=
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~  193 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY  193 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence            33444557777788 8999999999999988543  4456678888999999999999999999999963  23333455


Q ss_pred             HHHHHhh
Q 013954          352 RARQFMF  358 (433)
Q Consensus       352 QAkrLly  358 (433)
                      .++++.+
T Consensus       194 ~~~~~~l  200 (282)
T PF14938_consen  194 SAKEYFL  200 (282)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            6666443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=95.23  E-value=0.32  Score=46.58  Aligned_cols=59  Identities=12%  Similarity=-0.007  Sum_probs=39.3

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .+..|..+++.|++.+|+.+|++++...+.    ...+.+.++.+|...|+.++|+.+|+++.
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~  241 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAADPQ----CVRASILLGDLALAQGDYAAAIEALERVE  241 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHCcC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            345566667777777777777777665432    23566667777777777777777777765

>PRK11189 lipoprotein NlpI; Provisional

Probab=95.02  E-value=0.17  Score=48.82  Aligned_cols=84  Identities=15%  Similarity=0.108  Sum_probs=64.2

Q ss_pred             HHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHH
Q 013954          256 QLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEAR  335 (433)
Q Consensus       256 e~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAi  335 (433)
                      +.+..|.+-.  .++|..-   ..-+..|..++..|+|.+|++.|++|+++-|..    ..+.+.+++||-..||.++|+
T Consensus        82 ~A~~~~~~Al--~l~P~~~---~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~g~~~eA~  152 (296)
T PRK11189         82 LARNDFSQAL--ALRPDMA---DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAYLNRGIALYYGGRYELAQ  152 (296)
T ss_pred             HHHHHHHHHH--HcCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHH
Confidence            3344554443  3455442   345778999999999999999999999876543    457888999999999999999


Q ss_pred             HHHHHHh-cCCCHH
Q 013954          336 IMYEKLQ-SHPNAL  348 (433)
Q Consensus       336 aLYkkL~-sHP~~e  348 (433)
                      ..|++.. .+|+.-
T Consensus       153 ~~~~~al~~~P~~~  166 (296)
T PRK11189        153 DDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHHHHHhCCCCH
Confidence            9999974 688654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=94.97  E-value=0.14  Score=55.25  Aligned_cols=65  Identities=11%  Similarity=0.115  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      ..+..|..++..|++.+|+.+|++|++.-+.    ...+..+|+.+|...|+.++|++.|+++. .||+.
T Consensus       286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~----~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~  351 (656)
T PRK15174        286 IVTLYADALIRTGQNEKAIPLLQQSLATHPD----LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT  351 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            3556699999999999999999999987544    35677889999999999999999999986 67864

>PRK12370 invasion protein regulator; Provisional

Probab=94.96  E-value=0.14  Score=53.74  Aligned_cols=62  Identities=6%  Similarity=-0.131  Sum_probs=50.4

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          281 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       281 ~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      +..|..++..|++.+|+.+|++|+++-|....    +..+++.+|-..||.++|+..|++.. -+|.
T Consensus       342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~----a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~  404 (553)
T PRK12370        342 GLLGLINTIHSEYIVGSLLFKQANLLSPISAD----IKYYYGWNLFMAGQLEEALQTINECLKLDPT  404 (553)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            34578888999999999999999988766543    55778889999999999999999974 5665

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=94.80  E-value=0.11  Score=52.80  Aligned_cols=61  Identities=16%  Similarity=0.065  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      ...+..|+.++..|+|.+|+..|++++..-+.    ..++...++.+|...|+.++|+..|+++.
T Consensus        23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~   83 (899)
T TIGR02917        23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN----DAEARFLLGKIYLALGDYAAAEKELRKAL   83 (899)
T ss_pred             HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34566677777777777777777777654332    44566667777777777777777777764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.78  E-value=0.12  Score=52.43  Aligned_cols=63  Identities=21%  Similarity=0.283  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      ..++.+.+++.+++.|++.+|.+.|-.|++..+.+    +++.+-||.||-+.|+.++|.+++.+|-
T Consensus       133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~----~~~~~~la~~~l~~g~~e~A~~iL~~lP  195 (304)
T COG3118         133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN----SEAKLLLAECLLAAGDVEAAQAILAALP  195 (304)
T ss_pred             HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc----chHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence            66779999999999999999999999999999877    7899999999999999999999999984

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=94.77  E-value=0.09  Score=52.78  Aligned_cols=58  Identities=22%  Similarity=0.184  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      -.+..|+.++..|++.+|..+||++++.-|.     -.+.++|+.+|++.|++++|..+|++=
T Consensus       330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-----~~~~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPD-----AYDYAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4677899999999999999999999987543     345689999999999999999999964

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=94.76  E-value=0.085  Score=49.34  Aligned_cols=99  Identities=20%  Similarity=0.156  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954          249 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  328 (433)
Q Consensus       249 aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  328 (433)
                      .+.-+..+.+..|++-  +.++|.....   ....+..+.+.|++.++.+.++......+.+..+.    ..++.||..+
T Consensus       157 ~~~G~~~~A~~~~~~a--l~~~P~~~~~---~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~----~~la~~~~~l  227 (280)
T PF13429_consen  157 EQLGDPDKALRDYRKA--LELDPDDPDA---RNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLW----DALAAAYLQL  227 (280)
T ss_dssp             HHCCHHHHHHHHHHHH--HHH-TT-HHH---HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHC----HHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHH--HHcCCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHH----HHHHHHhccc
Confidence            3444566777777754  4666765443   33457788999999998888888777776666654    4569999999


Q ss_pred             CChHHHHHHHHHHh-cCC-CHHHHHHHHHH
Q 013954          329 HRPKEARIMYEKLQ-SHP-NALVSKRARQF  356 (433)
Q Consensus       329 GR~~EAiaLYkkL~-sHP-~~eVrKQAkrL  356 (433)
                      |+.++|+.+|+++. .|| ++.+...=..+
T Consensus       228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~  257 (280)
T PF13429_consen  228 GRYEEALEYLEKALKLNPDDPLWLLAYADA  257 (280)
T ss_dssp             T-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            99999999999996 477 56655443333

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=94.44  E-value=0.34  Score=51.61  Aligned_cols=70  Identities=16%  Similarity=0.097  Sum_probs=58.9

Q ss_pred             HHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHhh
Q 013954          284 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMF  358 (433)
Q Consensus       284 Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLly  358 (433)
                      |-.+.-+|++.+|..+|++|+++-+  +   -++-+.++.+|+..||.++|++.|++- .-.|...+.-..++|.|
T Consensus       427 a~~~~~~g~~~~A~~~l~rAl~L~p--s---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f  497 (517)
T PRK10153        427 AVQALVKGKTDEAYQAINKAIDLEM--S---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIENLVF  497 (517)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHhccc
Confidence            5556678999999999999999885  3   357888999999999999999999876 46888777777777765

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=94.43  E-value=0.088  Score=39.39  Aligned_cols=41  Identities=15%  Similarity=0.152  Sum_probs=38.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 013954          318 ALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMF  358 (433)
Q Consensus       318 qLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLly  358 (433)
                      .|.||-+|-.+|+.+.|+.+-+.+..+.+...+.+|+.||=
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL~   42 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEEGDEAQRQEARALLA   42 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999999973

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=94.42  E-value=0.29  Score=45.78  Aligned_cols=102  Identities=12%  Similarity=0.035  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954          249 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  328 (433)
Q Consensus       249 aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  328 (433)
                      ....++.+.|.......      .......--+..|..+...|+..+|+..|++|+.+-|.++.+    ...|+.++-..
T Consensus       124 ~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~----~~~l~~~li~~  193 (280)
T PF13429_consen  124 GDYDEAEELLEKLEELP------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDA----RNALAWLLIDM  193 (280)
T ss_dssp             T-HHHHHHHHHHHHH-T---------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHH----HHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHHhcc------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH----HHHHHHHHHHC
Confidence            34455555666654222      122334446677899999999999999999999999887653    45566677788


Q ss_pred             CChHHHHHHHHHHhc-C-CCHHHHHHHHHHhhHH
Q 013954          329 HRPKEARIMYEKLQS-H-PNALVSKRARQFMFSF  360 (433)
Q Consensus       329 GR~~EAiaLYkkL~s-H-P~~eVrKQAkrLlyiL  360 (433)
                      |+.++|+.+++.+.. . .++.+...=....+.+
T Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l  227 (280)
T PF13429_consen  194 GDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL  227 (280)
T ss_dssp             CHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence            999998888888852 2 3444544333333333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=94.41  E-value=0.34  Score=44.46  Aligned_cols=125  Identities=17%  Similarity=0.162  Sum_probs=84.4

Q ss_pred             cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC-----------ChHHHHHHHH
Q 013954          271 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH-----------RPKEARIMYE  339 (433)
Q Consensus       271 p~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G-----------R~~EAiaLYk  339 (433)
                      |...-.-+..|..|...+..|+|.+|+..|+..++.-|... .-..+..++++|+-...           ...+|+..++
T Consensus        36 P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~  114 (203)
T PF13525_consen   36 PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFE  114 (203)
T ss_dssp             TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHH
Confidence            44444455678999999999999999999999998776654 55789999999875443           3458999999


Q ss_pred             HHh-cCCCHHHHHHHHHHhhHHH---HHHhhhhcccCCCCcchHHHHHHhhcccccccCcc
Q 013954          340 KLQ-SHPNALVSKRARQFMFSFQ---AMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYPLQE  396 (433)
Q Consensus       340 kL~-sHP~~eVrKQAkrLlyiLE---Ap~llKv~~~~~~~t~Yd~Yf~af~~~k~~y~~~e  396 (433)
                      .|. ++|+-.-...|++.|--+.   |-.-+.|...|.+...|..=-.-+..=-.+||.+.
T Consensus       115 ~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~  175 (203)
T PF13525_consen  115 ELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP  175 (203)
T ss_dssp             HHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred             HHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence            995 8999999999988766655   34444455556666666542222222233455444

>PRK12370 invasion protein regulator; Provisional

Probab=94.38  E-value=0.55  Score=49.32  Aligned_cols=84  Identities=14%  Similarity=0.044  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954          250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  329 (433)
Q Consensus       250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  329 (433)
                      ...+..+.++.|++-.  .++|..-.   ..+..|..++..|++.+|+.+|++|+.+-|....    +.++++.++-..|
T Consensus       350 ~~g~~~~A~~~~~~Al--~l~P~~~~---a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~----~~~~~~~~~~~~g  420 (553)
T PRK12370        350 IHSEYIVGSLLFKQAN--LLSPISAD---IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA----AGITKLWITYYHT  420 (553)
T ss_pred             HccCHHHHHHHHHHHH--HhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh----hHHHHHHHHHhcc
Confidence            4456778888887655  45565433   2466789999999999999999999888776432    2233333344467


Q ss_pred             ChHHHHHHHHHHh
Q 013954          330 RPKEARIMYEKLQ  342 (433)
Q Consensus       330 R~~EAiaLYkkL~  342 (433)
                      +.++|++.|+++.
T Consensus       421 ~~eeA~~~~~~~l  433 (553)
T PRK12370        421 GIDDAIRLGDELR  433 (553)
T ss_pred             CHHHHHHHHHHHH
Confidence            7777777777763

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=94.33  E-value=0.31  Score=42.58  Aligned_cols=82  Identities=16%  Similarity=0.209  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHH-----
Q 013954          252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQD-----  326 (433)
Q Consensus       252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAyd-----  326 (433)
                      .+..+.+..|++-..+.-++.  ......+..|..++..|++.+|+.+|++|+..-+..    +.....++.+|-     
T Consensus        49 g~~~~A~~~~~~al~l~~~~~--~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~----~~~~~~la~i~~~~~~~  122 (168)
T CHL00033         49 GEYAEALQNYYEAMRLEIDPY--DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL----PQALNNMAVICHYRGEQ  122 (168)
T ss_pred             CCHHHHHHHHHHHHhccccch--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHhhHH
Confidence            345567777877766654443  233356778999999999999999999999874433    455667777777     


Q ss_pred             --hcCChHHHHHHHH
Q 013954          327 --SLHRPKEARIMYE  339 (433)
Q Consensus       327 --A~GR~~EAiaLYk  339 (433)
                        ..|+.++|+..|+
T Consensus       123 ~~~~g~~~~A~~~~~  137 (168)
T CHL00033        123 AIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHcccHHHHHHHHH
Confidence              7778775555554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=93.92  E-value=0.42  Score=54.55  Aligned_cols=65  Identities=17%  Similarity=0.194  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      ..+..|..++..|+|.+|+.+|++|++.-+...    .+.+.|+.+|...|+.++|+..|+++. .+|+-
T Consensus       353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~----~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~  418 (1157)
T PRK11447        353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDS----YAVLGLGDVAMARKDYAAAERYYQQALRMDPGN  418 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            345679999999999999999999999876443    577789999999999999999999975 56664

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.90  E-value=0.1  Score=37.07  Aligned_cols=32  Identities=22%  Similarity=0.260  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          316 LAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       316 eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      ++.+.||.+|...|+.++|+.+|+++. .||+-
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~   34 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD   34 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            467889999999999999999999995 68864

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=93.86  E-value=0.45  Score=41.93  Aligned_cols=74  Identities=15%  Similarity=0.182  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChH
Q 013954          253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK  332 (433)
Q Consensus       253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~  332 (433)
                      +..+.+.-|++-..+.-++.  ......+..|..++..|+|.+|+.+|++|+..-+..    ......++.||...|+..
T Consensus        50 ~~~~A~~~~~~al~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~  123 (172)
T PRK02603         50 EYAEALENYEEALKLEEDPN--DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ----PSALNNIAVIYHKRGEKA  123 (172)
T ss_pred             CHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCChH
Confidence            33444555554443332322  223456788999999999999999999999986554    344556788888877743

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=93.83  E-value=0.95  Score=43.41  Aligned_cols=63  Identities=14%  Similarity=0.117  Sum_probs=32.0

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .+..|..++..|+|.+|+.+|++++..-......-..+...|+.+|...|+.++|+.+|+++.
T Consensus        72 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l  134 (389)
T PRK11788         72 HLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLV  134 (389)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344455556666666666666655543211111122344455555555566666666555554

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.67  E-value=0.53  Score=46.94  Aligned_cols=81  Identities=17%  Similarity=0.159  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR  354 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk  354 (433)
                      .....|=.|+..|.+|+|.+|-..|..+....+-. .--=++-|-|++|+..+|++++|.+.|++|. +.|.-.--++|+
T Consensus       177 ~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s-~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak  255 (262)
T COG1729         177 TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS-PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK  255 (262)
T ss_pred             cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            33445566999999999999999999998866544 4445778899999999999999999999995 799999888888


Q ss_pred             HHh
Q 013954          355 QFM  357 (433)
Q Consensus       355 rLl  357 (433)
                      .-+
T Consensus       256 ~~~  258 (262)
T COG1729         256 VAL  258 (262)
T ss_pred             HHH
Confidence            654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=93.54  E-value=0.34  Score=55.30  Aligned_cols=64  Identities=13%  Similarity=0.131  Sum_probs=54.8

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013954          281 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  348 (433)
Q Consensus       281 ~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  348 (433)
                      ...|..++..|++.+|+..|++|+..-|...    .+.+.|+.+|...|+.++|+++|+++. .+|+-.
T Consensus       465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~----~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~  529 (1157)
T PRK11447        465 AQQAEALENQGKWAQAAELQRQRLALDPGSV----WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP  529 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            4568889999999999999999998876543    467899999999999999999999985 588543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=93.42  E-value=0.24  Score=51.98  Aligned_cols=76  Identities=21%  Similarity=0.271  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh-----------HHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-----------GLAALQWSICQDSLHRPKEARIMYEKLQS  343 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG-----------GeaqLwLAiAydA~GR~~EAiaLYkkL~s  343 (433)
                      +.+...=..|..+|.+|+|..|...||+|+..+....-.-           =-+-+.||+||--+++..+||..|.+.-.
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE  285 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            3344444569999999999999999999988887332221           23557899999999999999999999876


Q ss_pred             CCCHHHH
Q 013954          344 HPNALVS  350 (433)
Q Consensus       344 HP~~eVr  350 (433)
                      |-..+++
T Consensus       286 ~~~~N~K  292 (397)
T KOG0543|consen  286 LDPNNVK  292 (397)
T ss_pred             cCCCchh
Confidence            6555554

>PRK15331 chaperone protein SicA; Provisional

Probab=93.33  E-value=0.22  Score=46.60  Aligned_cols=65  Identities=11%  Similarity=0.151  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          273 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       273 ~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      ..+.-+..|..|-.+|..|+|.+|..+|.-.+-.=.-+.+.    .|-|+.|++..+++++|+.+|---
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y----~~GLaa~~Q~~k~y~~Ai~~Y~~A   97 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY----TMGLAAVCQLKKQFQKACDLYAVA   97 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677789999999999999999999998765544444443    566777888888888888777654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.32  E-value=0.18  Score=32.71  Aligned_cols=31  Identities=23%  Similarity=0.340  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMV  308 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~  308 (433)
                      +--+..|..+|..|+|.+|+.+|++|+.+-+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            3456778888888888888888888887654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=92.72  E-value=0.71  Score=52.96  Aligned_cols=59  Identities=15%  Similarity=0.132  Sum_probs=30.7

Q ss_pred             HHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          284 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       284 Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      |..+.+.|++.+|+.+|++|++.-|..    .++...+++||...|+.++|++.|++.. -.|+
T Consensus       650 G~aL~~~G~~eeAi~~l~~AL~l~P~~----~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~  709 (987)
T PRK09782        650 GYALWDSGDIAQSREMLERAHKGLPDD----PALIRQLAYVNQRLDDMAATQHYARLVIDDIDN  709 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            444444455555555555554443322    3455556666666666666666666653 3443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.57  E-value=0.25  Score=53.58  Aligned_cols=106  Identities=20%  Similarity=0.266  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCC-----------
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHP-----------  345 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP-----------  345 (433)
                      .+.=..|...|..|+|.+|+.+|..|+++++--..+    --..|-||+++|..++-+.+|.+- .-.|           
T Consensus       116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF----YsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~  191 (606)
T KOG0547|consen  116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF----YSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS  191 (606)
T ss_pred             HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh----hhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            334456999999999999999999999999874211    112567777777777777776553 2232           


Q ss_pred             -------------------------CHHHHHHHHHHhhHHHHHHhhh--hcc---c-CCCCcchHHHHHHhhcc
Q 013954          346 -------------------------NALVSKRARQFMFSFQAMEMMK--VRS---S-SDKNTDYRNFFEAFVED  388 (433)
Q Consensus       346 -------------------------~~eVrKQAkrLlyiLEAp~llK--v~~---~-~~~~t~Yd~Yf~af~~~  388 (433)
                                               |.++--.+.|+| =.+||++.+  .+.   . +|..+.-.+||+.|..+
T Consensus       192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~L-kk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~  264 (606)
T KOG0547|consen  192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVL-KKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD  264 (606)
T ss_pred             HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHH-HHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence                                     222222333332 234554443  332   2 77899999999999986

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=92.46  E-value=0.57  Score=51.26  Aligned_cols=66  Identities=11%  Similarity=-0.009  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      +-.+-.+..++..|++.+|+..|++++...|.+.    .+.+.+|++|...|+.++|+.+|++.. -+|+-
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~----~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~  426 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ----GLRIDYASVLQARGWPRAAENELKKAEVLEPRN  426 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence            3446678888899999999999999988887774    578888999999999999999999885 57763

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=92.43  E-value=0.3  Score=46.83  Aligned_cols=89  Identities=18%  Similarity=0.130  Sum_probs=65.2

Q ss_pred             HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc--chhHHHHHHHHHHHHhc-CC
Q 013954          254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSL-HR  330 (433)
Q Consensus       254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~-GR  330 (433)
                      ..+....|.+-.-+.........+-..|..+-..+..+++.+|+.+|++|.+..-...  ...+.+...+|..|+.. |+
T Consensus        51 ~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d  130 (282)
T PF14938_consen   51 WEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGD  130 (282)
T ss_dssp             CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--
T ss_pred             cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCC
Confidence            3455566665554444444556666788888888889999999999999988764443  44467888899999999 99


Q ss_pred             hHHHHHHHHHHh
Q 013954          331 PKEARIMYEKLQ  342 (433)
Q Consensus       331 ~~EAiaLYkkL~  342 (433)
                      .++|+..|++-.
T Consensus       131 ~e~Ai~~Y~~A~  142 (282)
T PF14938_consen  131 YEKAIEYYQKAA  142 (282)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998863

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=92.22  E-value=0.46  Score=45.07  Aligned_cols=61  Identities=13%  Similarity=-0.030  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS  343 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  343 (433)
                      -....|..++..|+|.+|+..|+++++.-+..    ..+...++.+|...||.++|+.+|++...
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~  176 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWRD  176 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence            34567889999999999999999999988776    34556678899999999999999998753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.04  E-value=0.84  Score=41.98  Aligned_cols=91  Identities=18%  Similarity=0.115  Sum_probs=66.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHH-HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHH
Q 013954          243 TAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEK-ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQW  321 (433)
Q Consensus       243 teEEkaaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~ee-a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwL  321 (433)
                      +.++.+++-+++...|..|+++.       .+++++. ..+.|.-+...|++..|++.|+.+.+.+   +..|=.+.|++
T Consensus         8 ~~~~~~~~~~~Le~elk~~~~n~-------~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l   77 (177)
T PF10602_consen    8 TKAKNAEELEKLEAELKDAKSNL-------GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCL   77 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc-------chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHH
Confidence            44555777888888999998777       4555554 5567999999999999999999999987   66777777776


Q ss_pred             HHHHHh--cCChHHHHHHHHHHhc
Q 013954          322 SICQDS--LHRPKEARIMYEKLQS  343 (433)
Q Consensus       322 AiAydA--~GR~~EAiaLYkkL~s  343 (433)
                      .++-=+  .|..........+..+
T Consensus        78 ~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   78 NVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHH
Confidence            654433  3455555555555543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=91.96  E-value=1  Score=49.38  Aligned_cols=91  Identities=14%  Similarity=0.116  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954          249 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  328 (433)
Q Consensus       249 aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  328 (433)
                      .+..+..+.+..|++-.  .++|..-.   ..+..|..+.+.|++.+|+.+|+++++.-+.+..     .+.++.+|...
T Consensus        60 ~~~g~~~~A~~~~~~al--~~~P~~~~---a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-----~~~la~~l~~~  129 (765)
T PRK10049         60 RNLKQWQNSLTLWQKAL--SLEPQNDD---YQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-----LLALAYVYKRA  129 (765)
T ss_pred             HHcCCHHHHHHHHHHHH--HhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHC
Confidence            34445556666676433  44555422   2356788889999999999999999988655433     66689999999


Q ss_pred             CChHHHHHHHHHHh-cCCCHHH
Q 013954          329 HRPKEARIMYEKLQ-SHPNALV  349 (433)
Q Consensus       329 GR~~EAiaLYkkL~-sHP~~eV  349 (433)
                      |+.++|+..|+++. .+|+...
T Consensus       130 g~~~~Al~~l~~al~~~P~~~~  151 (765)
T PRK10049        130 GRHWDELRAMTQALPRAPQTQQ  151 (765)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999885 6886543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.85  E-value=0.74  Score=45.75  Aligned_cols=82  Identities=18%  Similarity=0.260  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh--------------------------HHHHHHH-------
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--------------------------GLAALQW-------  321 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG--------------------------GeaqLwL-------  321 (433)
                      +++..+=.+|..+|..|.|.+|...|..|++.|+.-+.--                          --++||-       
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~  172 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE  172 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence            5556677789999999999999999999999998765311                          1233443       


Q ss_pred             --HHHHHhcCChHHHHHHHHHHh-cCCCHH-HHHHHHHH
Q 013954          322 --SICQDSLHRPKEARIMYEKLQ-SHPNAL-VSKRARQF  356 (433)
Q Consensus       322 --AiAydA~GR~~EAiaLYkkL~-sHP~~e-VrKQAkrL  356 (433)
                        |-+|+.+...++|+.=|++|. +.|... .|+.-.||
T Consensus       173 RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  173 RRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence              788999999999999999996 777654 33333333

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=91.79  E-value=0.81  Score=49.24  Aligned_cols=60  Identities=15%  Similarity=0.035  Sum_probs=49.4

Q ss_pred             HHHHHHHhCCchhhhhhHHHHHHhhcc----cccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          282 KDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       282 ~~Gk~amerGkYreAV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      ..|..++..|+|.+|+..|++|++..-    ....-=+.+-..||.+|-..|+++||...|+.-
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A  309 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA  309 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            479999999999999999999987653    333333788899999999999999987777653

>PRK11189 lipoprotein NlpI; Provisional

Probab=91.73  E-value=1.7  Score=42.08  Aligned_cols=70  Identities=10%  Similarity=-0.072  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  348 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  348 (433)
                      ..++--+..|..+...|++.+|+..|++|+++-|..    ..+...++.+|...|+.++|+..|++.. ..|+-.
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~  132 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  132 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            335568889999999999999999999999987654    5778899999999999999999999985 467643

>TIGR00540 hemY_coli hemY protein

Probab=91.69  E-value=0.58  Score=47.07  Aligned_cols=59  Identities=19%  Similarity=0.161  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHH--HHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEK--VMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK  340 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEk--A~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk  340 (433)
                      |.-.+..|..++..|+|.+|.++||+  +++.-+     ..++...|+.+|+..|++++|..+|++
T Consensus       335 ~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-----~~~~~~~La~ll~~~g~~~~A~~~~~~  395 (409)
T TIGR00540       335 CCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-----DANDLAMAADAFDQAGDKAEAAAMRQD  395 (409)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            66677889999999999999999995  444432     345566889999999999999999996

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=91.58  E-value=1  Score=44.97  Aligned_cols=72  Identities=21%  Similarity=0.127  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC-HHH
Q 013954          274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN-ALV  349 (433)
Q Consensus       274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~-~eV  349 (433)
                      .+..+..++.|..+|++|++..|...||+|++.=+- +.   .+.+-+|..|+..|..+-|...|++-. .||+ .+|
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~---~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV  105 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YY---LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV  105 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cH---HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccch
Confidence            356678899999999999999999999999986543 32   356667889999999999999999974 5664 444

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=91.43  E-value=1  Score=48.61  Aligned_cols=87  Identities=9%  Similarity=0.043  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhh----hhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954          253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKE----ALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  328 (433)
Q Consensus       253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYre----AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  328 (433)
                      +..+.++.|++-..  .+|..   ....+..|..++..|+|.+    |+.+|++|++.-|..    ..+.+.|+.+|...
T Consensus       227 ~~~eA~~~~~~al~--~~p~~---~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~  297 (656)
T PRK15174        227 KYQEAIQTGESALA--RGLDG---AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN----VRIVTLYADALIRT  297 (656)
T ss_pred             CHHHHHHHHHHHHh--cCCCC---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHC
Confidence            34445555554442  33432   3345668999999999986    899999999887643    47788899999999


Q ss_pred             CChHHHHHHHHHHh-cCCCHH
Q 013954          329 HRPKEARIMYEKLQ-SHPNAL  348 (433)
Q Consensus       329 GR~~EAiaLYkkL~-sHP~~e  348 (433)
                      |+.++|+..|++.. .+|+..
T Consensus       298 g~~~eA~~~l~~al~l~P~~~  318 (656)
T PRK15174        298 GQNEKAIPLLQQSLATHPDLP  318 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999985 677743

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=91.41  E-value=0.91  Score=45.26  Aligned_cols=72  Identities=18%  Similarity=0.219  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh----cCCCHH
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ----SHPNAL  348 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~----sHP~~e  348 (433)
                      -+.+.|++|...++.|.|.+|+.+||++...- +.|++.=.++|-|+-|+=-.+..++|++.-+.-.    .|||.+
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d  108 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD  108 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence            46789999999999999999999999987554 4567779999999999999999999999887764    455544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.02  E-value=0.45  Score=31.32  Aligned_cols=31  Identities=23%  Similarity=0.432  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMV  308 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~  308 (433)
                      +.-+..|..++..|+|.+|+..|++|+++-+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            3456788889999999999999999887654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=90.93  E-value=0.53  Score=47.01  Aligned_cols=56  Identities=23%  Similarity=0.200  Sum_probs=50.5

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       283 ~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .|+.++..|+|.+|+..|-+|..+-+...    ++-+-|++|||-+||+++|..-|.|..
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~----~~~~~lgaaldq~Gr~~~Ar~ay~qAl  161 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAARLAPTDW----EAWNLLGAALDQLGRFDEARRAYRQAL  161 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhccCCCCh----hhhhHHHHHHHHccChhHHHHHHHHHH
Confidence            89999999999999999999998877664    556778999999999999999999974

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=90.69  E-value=1.4  Score=47.42  Aligned_cols=67  Identities=18%  Similarity=0.137  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc-ccchhHHHHHH---HHHHHHhcCChHHHHHHHHHH
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF-KSELHGLAALQ---WSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~-~S~LGGeaqLw---LAiAydA~GR~~EAiaLYkkL  341 (433)
                      ..+......+..+..+|+|++|.++++.||..... -...|+++...   ++..+++.++.++|+.+|++.
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a  351 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA  351 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            44555666799999999999999999999988765 22566777665   688899999999999999865

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=90.61  E-value=1.2  Score=51.23  Aligned_cols=28  Identities=14%  Similarity=0.096  Sum_probs=14.3

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013954          281 LKDGDSLMDSGKLKEALPFYEKVMNKMV  308 (433)
Q Consensus       281 ~~~Gk~amerGkYreAV~~lEkA~~~v~  308 (433)
                      +..++.++..|++.+|+.++++|+.+=+
T Consensus        82 ~~LA~~yl~~g~~~~A~~~~~kAv~ldP  109 (987)
T PRK09782         82 LYLAEAYRHFGHDDRARLLLEDQLKRHP  109 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            4445555555555555555555554433

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=90.15  E-value=2.1  Score=40.85  Aligned_cols=87  Identities=15%  Similarity=0.071  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc--ccchhHHHHHHHHHHHHhcC
Q 013954          252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLH  329 (433)
Q Consensus       252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~G  329 (433)
                      .-+...+..|++.-.      .+-.-.-.++.|..+|..|+|..|+.+|+.+......  =..|-..+-..|.-|+-.+|
T Consensus       159 ~lL~~A~~~f~~~~~------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  159 ELLEKAYEQFKKYGQ------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             HHHHHHHHHHHHhcc------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            344455556654332      4444455788999999999999999999999322211  14677888888999999999


Q ss_pred             ChHHHHHHHHHHhcC
Q 013954          330 RPKEARIMYEKLQSH  344 (433)
Q Consensus       330 R~~EAiaLYkkL~sH  344 (433)
                      +.++.+..|=+|-+|
T Consensus       233 ~~~~~l~~~leLls~  247 (247)
T PF11817_consen  233 DVEDYLTTSLELLSR  247 (247)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999888765

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=90.14  E-value=1.7  Score=49.11  Aligned_cols=106  Identities=12%  Similarity=0.140  Sum_probs=75.7

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHhhHH-
Q 013954          283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFMFSF-  360 (433)
Q Consensus       283 ~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiL-  360 (433)
                      .|+.+...|+|.+|++.|+++++.-|.+..+-    +-|+++|-..++.++|+..++++. ..|.  .+-. ..+.|+. 
T Consensus       108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l----~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~-l~layL~~  180 (822)
T PRK14574        108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLI----SGMIMTQADAGRGGVVLKQATELAERDPT--VQNY-MTLSYLNR  180 (822)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----HHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHH-HHHHHHHH
Confidence            37788899999999999999999998886443    466888888999999999999997 5665  3333 5667777 


Q ss_pred             ------HHHHhhh-hcccCCC-CcchHHHHHHhhcccccccCc
Q 013954          361 ------QAMEMMK-VRSSSDK-NTDYRNFFEAFVEDKTNYPLQ  395 (433)
Q Consensus       361 ------EAp~llK-v~~~~~~-~t~Yd~Yf~af~~~k~~y~~~  395 (433)
                            +|.+..+ +-...|. .+.|..|..+.+..+...++.
T Consensus       181 ~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~  223 (822)
T PRK14574        181 ATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL  223 (822)
T ss_pred             hcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence                  2222221 1111554 446688888888877665543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=89.57  E-value=1.7  Score=46.23  Aligned_cols=106  Identities=20%  Similarity=0.204  Sum_probs=76.9

Q ss_pred             hcCCCCCcchHHHHH---HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh---------------HHHHHHHHHHH
Q 013954          264 SVGLNVDPKLKSECE---KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---------------GLAALQWSICQ  325 (433)
Q Consensus       264 ~~Gl~Vdp~~k~e~e---ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG---------------GeaqLwLAiAy  325 (433)
                      ++-|.||+=..+...   +.-+.|..+|.+|+|.+|+..|-++|+.-+-+--++               .|.-..+|+++
T Consensus        81 ~~dL~vd~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL  160 (536)
T KOG4648|consen   81 KQDLPVDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL  160 (536)
T ss_pred             hccCCccHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence            367788876554333   234569999999999999999999999988776666               34444455544


Q ss_pred             ---------------HhcCChHHHHHHHHHHh-cCC-CHHHHHHHHHHhhHHHHHHhhhhc
Q 013954          326 ---------------DSLHRPKEARIMYEKLQ-SHP-NALVSKRARQFMFSFQAMEMMKVR  369 (433)
Q Consensus       326 ---------------dA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkrLlyiLEAp~llKv~  369 (433)
                                     .++|...||..=|+..- -.| +.+++|+..+|.=-+|+-=..|.+
T Consensus       161 d~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT  221 (536)
T KOG4648|consen  161 DKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKST  221 (536)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcC
Confidence                           47888999999998764 344 678999999888777765444444

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=89.23  E-value=0.71  Score=30.18  Aligned_cols=31  Identities=26%  Similarity=0.350  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMV  308 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~  308 (433)
                      +.-+..|+.++..|++.+|+.+|++|++.-+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4456778888888888888888888876543

...

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=88.88  E-value=0.61  Score=29.89  Aligned_cols=30  Identities=10%  Similarity=0.356  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMV  308 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~  308 (433)
                      ..|..|..++..|++.+|+..|+.+++.-|
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            578999999999999999999999988765

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=88.70  E-value=0.96  Score=48.38  Aligned_cols=130  Identities=19%  Similarity=0.274  Sum_probs=90.4

Q ss_pred             hcCCCCCcchH---------HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccc---------------cchh-----
Q 013954          264 SVGLNVDPKLK---------SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK---------------SELH-----  314 (433)
Q Consensus       264 ~~Gl~Vdp~~k---------~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~---------------S~LG-----  314 (433)
                      .++|++||.-.         ..|+..=..|..+|..|.|+.|.+.|-.|+..-|-+               ++||     
T Consensus       227 ~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~ea  306 (486)
T KOG0550|consen  227 QQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREA  306 (486)
T ss_pred             hhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhh
Confidence            46788888744         334455567999999999999999999987765543               3343     


Q ss_pred             --------------HHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHhhHHHHHH------hhhhccc--
Q 013954          315 --------------GLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMFSFQAME------MMKVRSS--  371 (433)
Q Consensus       315 --------------GeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLlyiLEAp~------llKv~~~--  371 (433)
                                    =++-|.-|.||.+++..++|..=|++. ++.-..++|+--++.-..|+=.+      .+.++..  
T Consensus       307 isdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as  386 (486)
T KOG0550|consen  307 ISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNAS  386 (486)
T ss_pred             hhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcc
Confidence                          134556677888888888888888877 45556788887777777777221      2223333  


Q ss_pred             -CCCCcchHHHHHHhhccccccc
Q 013954          372 -SDKNTDYRNFFEAFVEDKTNYP  393 (433)
Q Consensus       372 -~~~~t~Yd~Yf~af~~~k~~y~  393 (433)
                       .+++-.|+.-.-.|.-+++.-.
T Consensus       387 ~~eikkayrk~AL~~Hpd~~ags  409 (486)
T KOG0550|consen  387 DDEIKKAYRKLALVHHPDKNAGS  409 (486)
T ss_pred             cchhhhHHHHHHHHhCCCcCcch
Confidence             3477788888888877776655

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=87.96  E-value=1.3  Score=44.62  Aligned_cols=58  Identities=3%  Similarity=-0.212  Sum_probs=41.3

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 013954          283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSH  344 (433)
Q Consensus       283 ~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sH  344 (433)
                      .++.++..|+|.+|+..++++.+.-|.+.    .+...++.+|-..|+.++|+.++.+|.++
T Consensus       159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~----~al~ll~~~~~~~gdw~~a~~~l~~l~k~  216 (398)
T PRK10747        159 RVRIQLARNENHAARHGVDKLLEVAPRHP----EVLRLAEQAYIRTGAWSSLLDILPSMAKA  216 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence            36677777777777777777766665544    45566677777778888888888888644

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=87.96  E-value=2.5  Score=46.08  Aligned_cols=73  Identities=21%  Similarity=0.260  Sum_probs=58.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          268 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       268 ~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      .++|++   +++.-..|..+|..|+|+.||.+|.+|+..-|-.-++    --+.|-||-.+|...+|++=|+++. -||+
T Consensus       352 ~~~pe~---A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l----YsNRAac~~kL~~~~~aL~Da~~~ieL~p~  424 (539)
T KOG0548|consen  352 YINPEK---AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL----YSNRAACYLKLGEYPEALKDAKKCIELDPN  424 (539)
T ss_pred             hhChhH---HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH----HHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence            456666   3445555999999999999999999998887554443    4467899999999999999999986 5877


Q ss_pred             H
Q 013954          347 A  347 (433)
Q Consensus       347 ~  347 (433)
                      .
T Consensus       425 ~  425 (539)
T KOG0548|consen  425 F  425 (539)
T ss_pred             H
Confidence            4

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.64  E-value=2  Score=43.03  Aligned_cols=66  Identities=15%  Similarity=0.135  Sum_probs=59.7

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      .|+.+-.++..|+|..|...|..=++.-| +|.+-..+..||.-||=+.|+.++|...|..+. .||.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP-~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~  210 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYP-NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK  210 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC
Confidence            89999999999999999999999888875 456778999999999999999999999999995 5665

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=87.28  E-value=1.3  Score=46.71  Aligned_cols=56  Identities=18%  Similarity=0.035  Sum_probs=38.4

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       283 ~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .+.-...-..|++|+.+-++|++.=+.|.    .+-..-..||-++|..+.|+..+++.+
T Consensus       263 lA~c~lKl~~~~~Ai~~c~kvLe~~~~N~----KALyRrG~A~l~~~e~~~A~~df~ka~  318 (397)
T KOG0543|consen  263 LAACYLKLKEYKEAIESCNKVLELDPNNV----KALYRRGQALLALGEYDLARDDFQKAL  318 (397)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            34555566777777777777777666554    345556677777777777777777764

>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function

Probab=86.77  E-value=1.8  Score=34.27  Aligned_cols=60  Identities=25%  Similarity=0.345  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcc--cccchhHHHHHHHHHHHHhcCChHHHHHHH
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMV--FKSELHGLAALQWSICQDSLHRPKEARIMY  338 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~--~~S~LGGeaqLwLAiAydA~GR~~EAiaLY  338 (433)
                      +++..|..+|+.|+|=+|=+.||.+-...+  .+.-+-|.+|+--|..+-..|+.+-|..|+
T Consensus         1 ~~~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~   62 (62)
T PF03745_consen    1 EALEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL   62 (62)
T ss_dssp             -HHHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence            478899999999999999999999865544  566788999999999888899988888775

The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=86.62  E-value=1.6  Score=45.66  Aligned_cols=59  Identities=17%  Similarity=0.251  Sum_probs=48.6

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      -+-.|+.++..|.|..||+.||.|.+.   +-.+=|||.--|..||..+|+.++.+.--+..
T Consensus       217 si~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~  275 (389)
T COG2956         217 SIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA  275 (389)
T ss_pred             hhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            455699999999999999999998764   45788999999999999999977766544433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=86.51  E-value=1.8  Score=42.74  Aligned_cols=66  Identities=20%  Similarity=0.346  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHH--HHHHHHHhcCChHHHHHHHHHH-hcCCC
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAAL--QWSICQDSLHRPKEARIMYEKL-QSHPN  346 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqL--wLAiAydA~GR~~EAiaLYkkL-~sHP~  346 (433)
                      ..+..|..|..+-+-|+|.+|+++|++++.-+     +.|+.+|  -+|.|+=++++..+|+..-++| ..||.
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~-----fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa  156 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALSGI-----FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA  156 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-----cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence            45678889999999999999999999987543     3444443  4566777889999999888888 45654

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=86.32  E-value=2.5  Score=34.64  Aligned_cols=57  Identities=18%  Similarity=0.133  Sum_probs=47.8

Q ss_pred             HHHhCCchhhhhhHHHHHHhhcccccchh-----HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          286 SLMDSGKLKEALPFYEKVMNKMVFKSELH-----GLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       286 ~amerGkYreAV~~lEkA~~~v~~~S~LG-----GeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .+..+|.|.+|++.|....+.........     ..+.+.+|.++-..|+.++|+..++...
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi   68 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI   68 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            46789999999999999988876655433     5778899999999999999999998764

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=86.04  E-value=1  Score=30.93  Aligned_cols=24  Identities=21%  Similarity=0.494  Sum_probs=16.1

Q ss_pred             HHHHHHHhCCchhhhhhHHHHHHh
Q 013954          282 KDGDSLMDSGKLKEALPFYEKVMN  305 (433)
Q Consensus       282 ~~Gk~amerGkYreAV~~lEkA~~  305 (433)
                      ..|..++..|+|.+|+++||+++.
T Consensus         4 ~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    4 NLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456777777777777777777553

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=85.96  E-value=2.2  Score=31.54  Aligned_cols=55  Identities=20%  Similarity=0.311  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCC-chhhhhhHHHHHHhhc
Q 013954          248 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSG-KLKEALPFYEKVMNKM  307 (433)
Q Consensus       248 aaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerG-kYreAV~~lEkA~~~v  307 (433)
                      ..+..+..+.+..|.+-+  .+||..   ..-.+..|..++..| +|.+|+..|++|+++-
T Consensus        13 ~~~~~~~~~A~~~~~~ai--~~~p~~---~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen   13 YFQQGDYEEAIEYFEKAI--ELDPNN---AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             HHHTTHHHHHHHHHHHHH--HHSTTH---HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHcCCHHHHHHHHHHHH--HcCCCC---HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            455677888888998665  566664   345888999999999 8999999999998764

...

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=85.74  E-value=7.6  Score=32.96  Aligned_cols=75  Identities=12%  Similarity=0.009  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh------------------HHHHHHHHHHHHhcCChHHHHH
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------------GLAALQWSICQDSLHRPKEARI  336 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG------------------GeaqLwLAiAydA~GR~~EAia  336 (433)
                      .+++..+..|..+...|.-.++++.|++|+++....---+                  -.+...++.++...|+.++|+.
T Consensus         4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~   83 (146)
T PF03704_consen    4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALR   83 (146)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            4677788888889999999999999999988774331111                  1445567778889999999999


Q ss_pred             HHHHHh-cCCCHHH
Q 013954          337 MYEKLQ-SHPNALV  349 (433)
Q Consensus       337 LYkkL~-sHP~~eV  349 (433)
                      +|+++. .+|.-+-
T Consensus        84 ~~~~~l~~dP~~E~   97 (146)
T PF03704_consen   84 LLQRALALDPYDEE   97 (146)
T ss_dssp             HHHHHHHHSTT-HH
T ss_pred             HHHHHHhcCCCCHH
Confidence            999996 7999773

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=85.09  E-value=3.9  Score=38.10  Aligned_cols=76  Identities=12%  Similarity=0.090  Sum_probs=60.9

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cC----CCHHHHHHHHH
Q 013954          281 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SH----PNALVSKRARQ  355 (433)
Q Consensus       281 ~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sH----P~~eVrKQAkr  355 (433)
                      |-.|--.=..|+|.+|+..|+.|..+-+    =.-+.-..++.||=++|+.++|+.-.+.-. .+    -+.+|+++|+.
T Consensus        73 ~gLG~~~Q~~g~~~~AI~aY~~A~~L~~----ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~  148 (157)
T PRK15363         73 FRLGECCQAQKHWGEAIYAYGRAAQIKI----DAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEK  148 (157)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence            4446666778999999999999987764    345677889999999999999998888664 33    47789999999


Q ss_pred             HhhHH
Q 013954          356 FMFSF  360 (433)
Q Consensus       356 LlyiL  360 (433)
                      +|-.|
T Consensus       149 ~L~~l  153 (157)
T PRK15363        149 MLQQL  153 (157)
T ss_pred             HHHHh
Confidence            88655

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=84.79  E-value=2.5  Score=48.45  Aligned_cols=65  Identities=26%  Similarity=0.374  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      .+.+.--++..+.+|+.|+|++|+++|-.++..-.-+.   +-+-.-+|-||-.+|+.++||.-|++.
T Consensus       411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~---~~vw~~~a~c~~~l~e~e~A~e~y~kv  475 (895)
T KOG2076|consen  411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN---AFVWYKLARCYMELGEYEEAIEFYEKV  475 (895)
T ss_pred             hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc---hhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34445556667777777777777777766554443333   223333566777777777777666665

>PRK14574 hmsH outer membrane protein; Provisional

Probab=84.78  E-value=3.7  Score=46.46  Aligned_cols=91  Identities=12%  Similarity=0.097  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh
Q 013954          248 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  327 (433)
Q Consensus       248 aaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  327 (433)
                      ..|.-++.+.+..+++-.  ..+|..-..   .++....+...|++.+|+.++|++++    ...+.-...+-+|.+|-.
T Consensus        44 ~~r~Gd~~~Al~~L~qaL--~~~P~~~~a---v~dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~  114 (822)
T PRK14574         44 RARAGDTAPVLDYLQEES--KAGPLQSGQ---VDDWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRN  114 (822)
T ss_pred             HHhCCCHHHHHHHHHHHH--hhCccchhh---HHHHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHH
Confidence            344445556666665443  444443211   11555666777999999999999882    223333455566889999


Q ss_pred             cCChHHHHHHHHHHh-cCCCH
Q 013954          328 LHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       328 ~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      .|+.++|+.+|+++. .+|+-
T Consensus       115 ~gdyd~Aiely~kaL~~dP~n  135 (822)
T PRK14574        115 EKRWDQALALWQSSLKKDPTN  135 (822)
T ss_pred             cCCHHHHHHHHHHHHhhCCCC
Confidence            999999999999995 56654

>TIGR00540 hemY_coli hemY protein

Probab=84.67  E-value=7.4  Score=39.29  Aligned_cols=73  Identities=18%  Similarity=0.105  Sum_probs=38.1

Q ss_pred             HHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHHHHHHHh
Q 013954          282 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSKRARQFM  357 (433)
Q Consensus       282 ~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkrLl  357 (433)
                      -.|+.+..+|++.+|..+|+++.+..+.. .+  .+.+.++..+-..|+.++|++..+.+. .+| |+.+.+...++.
T Consensus       123 laA~aa~~~g~~~~A~~~l~~a~~~~p~~-~l--~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~  197 (409)
T TIGR00540       123 KAAEAAQQRGDEARANQHLEEAAELAGND-NI--LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAY  197 (409)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCcC-ch--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            33566666666666666666665433221 11  123334555555666666666666663 455 344444333333

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=84.30  E-value=4.9  Score=29.55  Aligned_cols=55  Identities=24%  Similarity=0.384  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc
Q 013954          250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF  309 (433)
Q Consensus       250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~  309 (433)
                      +..+..+.++.|+.=.  ..+|.   ..+..+..|..++.+|+|.+|+.+|+++++.-|.
T Consensus         9 ~~g~~~~A~~~~~~~l--~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    9 QQGDYDEAIAAFEQAL--KQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HCTHHHHHHHHHHHHH--CCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HcCCHHHHHHHHHHHH--HHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            3445666677776544  33355   4455888999999999999999999999887653

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=84.16  E-value=2  Score=28.49  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=14.1

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHh
Q 013954          281 LKDGDSLMDSGKLKEALPFYEKVMN  305 (433)
Q Consensus       281 ~~~Gk~amerGkYreAV~~lEkA~~  305 (433)
                      ...|..++.+|+|.+|+.++++|++
T Consensus         6 ~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    6 NNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhcchhhHHHHHHHH
Confidence            3445566666666666666666544

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=83.88  E-value=5  Score=37.20  Aligned_cols=95  Identities=18%  Similarity=0.295  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCC--CCCcch-------HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh
Q 013954          244 AEARAAKEERTRQLLAAYKKSVGL--NVDPKL-------KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH  314 (433)
Q Consensus       244 eEEkaaRe~rtke~LaaYrk~~Gl--~Vdp~~-------k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG  314 (433)
                      +-||.-.+.-..+.-+.||+-+-+  +|-++.       .+-|-..|  ...+-.-|+|.+++..-+.|+-..+++-+|+
T Consensus        15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~L--s~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~   92 (144)
T PF12968_consen   15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGL--SGALAGLGRYDECLQSADRALRYFNRRGELH   92 (144)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHH--HHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHH--HHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence            335555555566667777766532  222221       12233322  3456788999999999999999999999998


Q ss_pred             H-H------HHHHHHHHHHhcCChHHHHHHHHH
Q 013954          315 G-L------AALQWSICQDSLHRPKEARIMYEK  340 (433)
Q Consensus       315 G-e------aqLwLAiAydA~GR~~EAiaLYkk  340 (433)
                      - +      +-+.-+.|++.+||.+||+.-|+.
T Consensus        93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~  125 (144)
T PF12968_consen   93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM  125 (144)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            2 2      333457899999999999988775

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=81.93  E-value=2.2  Score=30.20  Aligned_cols=33  Identities=15%  Similarity=0.029  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccc
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE  312 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~  312 (433)
                      .+..|..++..|++.+|+..|+++++..|.+..
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~   36 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDDPE   36 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            567799999999999999999999999887754

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=81.85  E-value=3.1  Score=31.57  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954          274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM  307 (433)
Q Consensus       274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v  307 (433)
                      ...+...+..|......|+|.+|+++|++|++..
T Consensus        43 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen   43 PDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            3457788899999999999999999999998763

...

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=81.46  E-value=2.4  Score=29.13  Aligned_cols=22  Identities=14%  Similarity=-0.026  Sum_probs=19.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHH
Q 013954          319 LQWSICQDSLHRPKEARIMYEK  340 (433)
Q Consensus       319 LwLAiAydA~GR~~EAiaLYkk  340 (433)
                      ..|+.+|...|+.++|+.+|++
T Consensus         3 ~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    3 NNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Confidence            4689999999999999999998

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=81.28  E-value=3.7  Score=47.26  Aligned_cols=85  Identities=21%  Similarity=0.305  Sum_probs=60.6

Q ss_pred             HHHHHHHHHhhcCCCCCcchHHHHHHHHH-----------HHHHHHhCCchhhhhhHHHHHHhhcccccch---------
Q 013954          254 TRQLLAAYKKSVGLNVDPKLKSECEKALK-----------DGDSLMDSGKLKEALPFYEKVMNKMVFKSEL---------  313 (433)
Q Consensus       254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~-----------~Gk~amerGkYreAV~~lEkA~~~v~~~S~L---------  313 (433)
                      ..+++..|+..-   --.+..+.|+++++           .|-.++.+|+|.+|.-.  .+.+..+.++..         
T Consensus        34 ~~~Li~~~~~~~---~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~  108 (906)
T PRK14720         34 LDDLIDAYKSEN---LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDK  108 (906)
T ss_pred             HHHHHHHHHhcC---CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHH
Confidence            345566663211   12334455655544           48889999999998877  888888888721         


Q ss_pred             -h--H---HHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954          314 -H--G---LAALQWSICQDSLHRPKEARIMYEKLQS  343 (433)
Q Consensus       314 -G--G---eaqLwLAiAydA~GR~~EAiaLYkkL~s  343 (433)
                       |  |   .+-.-||+|||.+|+.++|+++|+++..
T Consensus       109 i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~  144 (906)
T PRK14720        109 ILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK  144 (906)
T ss_pred             HHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence             1  1   4677899999999999999999999963

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=81.02  E-value=15  Score=28.37  Aligned_cols=55  Identities=33%  Similarity=0.388  Sum_probs=30.3

Q ss_pred             HHHhCCchhhhhhHHHHHHhhcccc-cchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          286 SLMDSGKLKEALPFYEKVMNKMVFK-SELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       286 ~amerGkYreAV~~lEkA~~~v~~~-S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .++..|++..|+..|+++.. +... .... ...+.+.-.+...++.++|+..+.+..
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~  194 (291)
T COG0457         139 ALYELGDYEEALELYEKALE-LDPELNELA-EALLALGALLEALGRYEEALELLEKAL  194 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHh-cCCCccchH-HHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence            66777777777777777755 3332 1221 112222222566677777777776665

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=80.49  E-value=3.2  Score=27.51  Aligned_cols=25  Identities=20%  Similarity=0.048  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          317 AALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       317 aqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      +...|+++|-..|+.++|+.+|++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHH
Confidence            4567999999999999999998876

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=80.18  E-value=6.5  Score=33.43  Aligned_cols=62  Identities=11%  Similarity=0.130  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHH
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIM  337 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaL  337 (433)
                      .++.+.++.|..+|+.-+.++||.-+++|+..+..... ==.+-=+|+.||.-.|+..+.++-
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~-rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRED-RFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677889999999999999999999999999966331 113444788999999999998763

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	433
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 44/300 (14%), Positives = 91/300 (30%), Gaps = 68/300 (22%)

Query: 179 EVEIIVGDTSKFGES----TVLRPGPKQ------EENLEF-YKPKVSTWGVFPR-PGNI- 225
           E++ I+        +      L    ++      EE L   YK  +S      R P  + 
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 226 -------SKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKL---KS 275
                   + +   +     +V     +R     + RQ L   + +  + +D  L   K+
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNV-----SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 276 ECEKALKDGDSLMDSGKLKEALP---FYEKVMNKMVFKSELHGLAALQWSICQDSLHRP- 331
                +   D  +   K++  +    F+  + N    ++ L  L  L + I  +   R  
Sbjct: 165 ----WVA-LDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 332 ------------KEARIMYEKLQSHPNALV------SKRARQFMFSFQAMEMMKVRSSSD 373
                       +       K + + N L+      + +A    F+     ++  R    
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-AFNLSCKILLTTRFKQ- 276

Query: 374 KNTDYRNFFEA--FVEDKTNYPLQEAGSEE------GALTQALPYMIFLASPIFVILLIA 425
             TD+ +         D  +  L     +           Q LP  +   +P   + +IA
Sbjct: 277 -VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-RRLSIIA 334

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 61/451 (13%), Positives = 112/451 (24%), Gaps = 153/451 (33%)

Query: 8   WLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEPEASLDPVK 67
           WL     +KN N      +  L  L      N TS +D       S N      S+    
Sbjct: 186 WL----NLKNCNSPETVLEM-LQKLLYQIDPNWTSRSD------HSSNIKLRIHSIQAEL 234

Query: 68  LAFEKAKAYRK----LKESNSDSKYEQNPDKDVARAAVEKAKEYK-------KNKDTVSF 116
               K+K Y      L               +V  A    A           + K    F
Sbjct: 235 RRLLKSKPYENCLLVL-------------L-NVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 117 QNGTNSGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGD 176
            +   +     +         E   +    ++     D      LP   V  T+P     
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQD------LPR-EVLTTNPRR--- 329

Query: 177 TPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYK-PKVST-------------------- 215
              + II        ES  +R G    +N +     K++T                    
Sbjct: 330 ---LSII-------AES--IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 216 WGVFPRPGNI-SKTF----GGGRTIRPGDVLETAEARAAKEERT---------------- 254
             VFP   +I +                 V+      +  E++                 
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 255 ---------RQLLAAYKKSVGLNVDPKLK---------------SECEKALKDG---DSL 287
                    R ++  Y      + D  +                   E   +        
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497

Query: 288 MD----SGKLKEA----------------LPFYEKVM--NKMVFKSELHGLAALQWSI-C 324
           +D      K++                  L FY+  +  N   ++  ++ +  L +    
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI--LDFLPKI 555

Query: 325 QDSLHRPKEARIMYEKLQSHPNALVSKRARQ 355
           +++L   K   ++   L +   A+  +  +Q
Sbjct: 556 EENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	433
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.42
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.36
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.21
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.98
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.96
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.96
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.9
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.87
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.83
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.81
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.81
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.8
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.8
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.79
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.78
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.77
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.76
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.73
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.7
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.65
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.63
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.63
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.61
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.6
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.6
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.53
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.51
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.49
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.49
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.48
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.48
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.48
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.47
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.46
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.45
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.44
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.43
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.42
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.4
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.39
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.37
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.35
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.35
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.34
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.33
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.32
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.29
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.27
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.24
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.22
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.2
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.19
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.16
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.15
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.14
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.12
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.11
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.1
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.09
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.09
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.02
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.02
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.02
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.01
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.0
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	96.98
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	96.95
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.92
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.89
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	96.89
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	96.87
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	96.86
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.86
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	96.86
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	96.85
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	96.83
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	96.81
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	96.81
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	96.8
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.78
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	96.78
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.78
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.77
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.76
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	96.76
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.76
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.74
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	96.74
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.73
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	96.72
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	96.7
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.7
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.69
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	96.67
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	96.64
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.61
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	96.6
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	96.59
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	96.58
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.57
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.56
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.54
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	96.46
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.43
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	96.41
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.39
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	96.38
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.36
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.36
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.34
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.34
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.34
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	96.34
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	96.34
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.34
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	96.3
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	96.29
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	96.26
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	96.23
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.21
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.19
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.16
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	96.15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	96.14
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.13
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	96.11
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.08
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.07
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	96.04
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.04
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.02
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	96.01
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	95.99
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	95.96
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	95.88
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	95.87
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	95.85
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.83
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	95.82
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	95.76
2gw1_A	514	Mitochondrial precursor proteins import receptor;	95.76
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	95.74
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	95.73
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	95.71
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	95.71
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	95.66
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	95.63
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	95.63
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	95.6
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.6
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	95.58
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	95.57
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	95.55
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	95.53
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	95.51
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	95.5
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	95.42
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	95.3
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.25
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	94.96
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	94.93
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	94.93
4g1t_A	472	Interferon-induced protein with tetratricopeptide	94.82
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	94.67
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	94.6
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	94.57
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	94.5
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	94.43
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	93.94
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	93.81
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	93.55
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	93.41
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	93.16
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	93.16
1klx_A	138	Cysteine rich protein B; structural genomics, heli	93.07
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.78
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	92.19
2kat_A	115	Uncharacterized protein; NESG, structure, structur	92.16
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	92.13
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	92.11
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	91.98
4g1t_A	472	Interferon-induced protein with tetratricopeptide	91.77
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	90.46
1klx_A	138	Cysteine rich protein B; structural genomics, heli	89.78
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	89.45
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	88.84
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	87.13
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	87.05
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	86.14
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	84.67
1pc2_A	152	Mitochondria fission protein; unknown function; NM	84.42
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	83.86
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	83.66
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	83.62
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	82.12
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	81.81
2cwy_A	94	Hypothetical protein TTHA0068; structural genomics	80.71

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.42  E-value=1.7e-06  Score=73.35  Aligned_cols=102  Identities=12%  Similarity=0.086  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC
Q 013954          251 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  330 (433)
Q Consensus       251 e~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  330 (433)
                      ..+..+.+..|++-.  .++|..-.   --+..|..++..|+|.+|+..|++|+.+-|...    .+.+.++.||..+|+
T Consensus        49 ~g~~~eA~~~~~~al--~~~P~~~~---~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~----~~~~~lg~~~~~lg~  119 (151)
T 3gyz_A           49 KGRIEEAEVFFRFLC--IYDFYNVD---YIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY----TPVFHTGQCQLRLKA  119 (151)
T ss_dssp             TTCHHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC----HHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHH--HhCCCCHH---HHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc----HHHHHHHHHHHHcCC
Confidence            345566777776544  45555433   356679999999999999999999999887654    577899999999999


Q ss_pred             hHHHHHHHHHHh-cCCCHHHHHHHHHHhhHHH
Q 013954          331 PKEARIMYEKLQ-SHPNALVSKRARQFMFSFQ  361 (433)
Q Consensus       331 ~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiLE  361 (433)
                      .++|+..|++.. ..|+..++++|+.+|-.++
T Consensus       120 ~~eA~~~~~~al~l~~~~~~~~~A~~ll~~l~  151 (151)
T 3gyz_A          120 PLKAKECFELVIQHSNDEKLKIKAQSYLDAIQ  151 (151)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence            999999999985 6999999999999997764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.36  E-value=2.2e-06  Score=68.70  Aligned_cols=102  Identities=13%  Similarity=0.114  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccch---hHHHHHHHHHHHH
Q 013954          250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL---HGLAALQWSICQD  326 (433)
Q Consensus       250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~L---GGeaqLwLAiAyd  326 (433)
                      +..+..+.+..|.+-.  +++|..-   .--+..|..++..|+|.+|+..|++|+++-+.....   -+.+-..++.||.
T Consensus        20 ~~~~~~~A~~~y~~Al--~~~p~~~---~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~   94 (127)
T 4gcn_A           20 KQKDFEKAHVHYDKAI--ELDPSNI---TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ   94 (127)
T ss_dssp             HTTCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHH--HhCCCCH---HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence            3456678888888654  6677653   346678999999999999999999999887655432   2667788999999


Q ss_pred             hcCChHHHHHHHHHH-hcCCCHHHHHHHHHH
Q 013954          327 SLHRPKEARIMYEKL-QSHPNALVSKRARQF  356 (433)
Q Consensus       327 A~GR~~EAiaLYkkL-~sHP~~eVrKQAkrL  356 (433)
                      +.|+.++|+..|++- ..||++++.++-+++
T Consensus        95 ~~~~~~~A~~~~~kal~~~~~~~~~~~l~~l  125 (127)
T 4gcn_A           95 KQNDLSLAVQWFHRSLSEFRDPELVKKVKEL  125 (127)
T ss_dssp             HTTCHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCcCHHHHHHHHHh
Confidence            999999999999985 579999988765543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.21  E-value=1.2e-05  Score=61.08  Aligned_cols=105  Identities=10%  Similarity=0.089  Sum_probs=78.6

Q ss_pred             HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHH
Q 013954          254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE  333 (433)
Q Consensus       254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E  333 (433)
                      ..+.+..|++-.  ..+|......+..+..|..++..|+|.+|+.+|+++++.-+. +..-..+.++++.||...|+.++
T Consensus        18 ~~~A~~~~~~~~--~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~~~~   94 (129)
T 2xev_A           18 YDDASQLFLSFL--ELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGKNTE   94 (129)
T ss_dssp             HHHHHHHHHHHH--HHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHH--HHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCCHHH
Confidence            334444444332  223443333456788899999999999999999999987654 33457889999999999999999


Q ss_pred             HHHHHHHHh-cCCCHHHHHHHHHHhhHHH
Q 013954          334 ARIMYEKLQ-SHPNALVSKRARQFMFSFQ  361 (433)
Q Consensus       334 AiaLYkkL~-sHP~~eVrKQAkrLlyiLE  361 (433)
                      |+..|+++. .+|+......|+..+-.++
T Consensus        95 A~~~~~~~~~~~p~~~~~~~a~~~l~~l~  123 (129)
T 2xev_A           95 AQQTLQQVATQYPGSDAARVAQERLQSIR  123 (129)
T ss_dssp             HHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence            999999985 7898888777777665544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.98  E-value=4e-05  Score=58.69  Aligned_cols=76  Identities=9%  Similarity=-0.006  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh----cCCCHHHHHHH
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ----SHPNALVSKRA  353 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~----sHP~~eVrKQA  353 (433)
                      ...+..|..++..|+|.+|+.+|++|++.-+...    .+.+.++.||...|+.++|+..|++..    .+++....++.
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l   83 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETDPDYV----GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL   83 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence            3467889999999999999999999999876644    478889999999999999999999875    35555555555


Q ss_pred             HHHh
Q 013954          354 RQFM  357 (433)
Q Consensus       354 krLl  357 (433)
                      .+++
T Consensus        84 ~~~l   87 (100)
T 3ma5_A           84 QDAK   87 (100)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.96  E-value=3.1e-05  Score=66.93  Aligned_cols=81  Identities=15%  Similarity=0.119  Sum_probs=69.7

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc----------CChHHHHHHHHHHh-cCCCHH
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL----------HRPKEARIMYEKLQ-SHPNAL  348 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~----------GR~~EAiaLYkkL~-sHP~~e  348 (433)
                      .+..|..++..|+|.+|+..|+++++.-+ .+....++.++++.||..+          |+.++|+..|+++. .||+-.
T Consensus       151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  229 (261)
T 3qky_A          151 QYEAARLYERRELYEAAAVTYEAVFDAYP-DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP  229 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCC-CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence            38889999999999999999999998754 5667788999999999988          99999999999996 799888


Q ss_pred             HHHHHHHHhhHHH
Q 013954          349 VSKRARQFMFSFQ  361 (433)
Q Consensus       349 VrKQAkrLlyiLE  361 (433)
                      .-++|..++--+.
T Consensus       230 ~~~~a~~~l~~~~  242 (261)
T 3qky_A          230 LLRTAEELYTRAR  242 (261)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7788877665443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.96  E-value=8.6e-05  Score=54.77  Aligned_cols=67  Identities=19%  Similarity=0.212  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      ++..+..|..++..|+|.+|+.+|++|+..-+..    ..+...++.||...|+.++|+..|++.. .+|+-
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            4567889999999999999999999999987654    4677889999999999999999999975 56764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.90  E-value=9e-05  Score=57.34  Aligned_cols=86  Identities=14%  Similarity=0.156  Sum_probs=66.7

Q ss_pred             HHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHH
Q 013954          256 QLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEAR  335 (433)
Q Consensus       256 e~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAi  335 (433)
                      +.+..|++-.-+..+  ........+..|..++..|+|.+|+.+|++|++.-+..    ..+.+.+++||...|+.++|+
T Consensus         8 ~A~~~~~~al~~~~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            8 QAVPYYEKAIASGLQ--GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH----QALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             CCHHHHHHHHSSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHcCCC--CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHcCCHHHHH
Confidence            345555555433322  22345567888999999999999999999999987665    678899999999999999999


Q ss_pred             HHHHHHh-cCCCH
Q 013954          336 IMYEKLQ-SHPNA  347 (433)
Q Consensus       336 aLYkkL~-sHP~~  347 (433)
                      ..|++.. .+|+.
T Consensus        82 ~~~~~al~~~p~~   94 (117)
T 3k9i_A           82 ELLLKIIAETSDD   94 (117)
T ss_dssp             HHHHHHHHHHCCC
T ss_pred             HHHHHHHHhCCCc
Confidence            9999975 45543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.87  E-value=9.8e-05  Score=58.09  Aligned_cols=72  Identities=11%  Similarity=0.002  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc---chhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS---ELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV  349 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S---~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV  349 (433)
                      +.-|..|+.+|+.|+|..|+.+|+.|++......   .--..+-.+|+.||...|+.++|+.+|+++. -.|+-..
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~   81 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR   81 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence            4568999999999999999999999999875543   2345788899999999999999999999985 6776543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.83  E-value=3.9e-05  Score=62.05  Aligned_cols=68  Identities=16%  Similarity=0.151  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccc--------------cchhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK--------------SELHGLAALQWSICQDSLHRPKEARIMYEK  340 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~--------------S~LGGeaqLwLAiAydA~GR~~EAiaLYkk  340 (433)
                      ..++.....|..+|..|+|.+|+.+|++|+..++..              ......+.+.++.||-.+|+.++|+..|++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            455566666777777777777777777776664221              122334555666667667777777766666


Q ss_pred             Hh
Q 013954          341 LQ  342 (433)
Q Consensus       341 L~  342 (433)
                      ..
T Consensus        89 al   90 (162)
T 3rkv_A           89 VL   90 (162)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.81  E-value=0.0001  Score=58.91  Aligned_cols=100  Identities=12%  Similarity=0.034  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954          252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  331 (433)
Q Consensus       252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  331 (433)
                      .+..+.+..|++-+  ..+|...   .-.+..|..++..|+|.+|+..|++|+.+-+...    .+.+.++.||...|+.
T Consensus        32 g~~~~A~~~~~~al--~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~  102 (142)
T 2xcb_A           32 GKWDDAQKIFQALC--MLDHYDA---RYFLGLGACRQSLGLYEQALQSYSYGALMDINEP----RFPFHAAECHLQLGDL  102 (142)
T ss_dssp             TCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----HHHHHHHHHHHHTTCH
T ss_pred             ccHHHHHHHHHHHH--HhCCccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCCH
Confidence            34455555565443  3344432   2356678999999999999999999998876554    4568899999999999


Q ss_pred             HHHHHHHHHHh-cCC----CHHHHHHHHHHhhHH
Q 013954          332 KEARIMYEKLQ-SHP----NALVSKRARQFMFSF  360 (433)
Q Consensus       332 ~EAiaLYkkL~-sHP----~~eVrKQAkrLlyiL  360 (433)
                      ++|+..|++.. .+|    ...+++++..++-.+
T Consensus       103 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  136 (142)
T 2xcb_A          103 DGAESGFYSARALAAAQPAHEALAARAGAMLEAV  136 (142)
T ss_dssp             HHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence            99999999874 344    456666666665444

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.81  E-value=9.4e-05  Score=59.42  Aligned_cols=72  Identities=13%  Similarity=0.226  Sum_probs=57.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          268 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       268 ~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      .|||+.   ++.....|..+|..|+|.+|+.+|++|++.-+..    ..+-..++.||..+|+.++|+..|++.. .+|+
T Consensus         7 ~inP~~---a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   79 (126)
T 4gco_A            7 YINPEL---AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK   79 (126)
T ss_dssp             CCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence            366653   4456678999999999999999999999887655    3566778999999999999999999874 4554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.80  E-value=0.0002  Score=53.01  Aligned_cols=82  Identities=16%  Similarity=0.045  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh---HHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHH
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRA  353 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQA  353 (433)
                      ...+..|..++..|+|.+|+.+|+++++..+......   ..+.+.++.+|...|+.++|+..|++.. .+|+..+....
T Consensus        39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l  118 (131)
T 1elr_A           39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC  118 (131)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            3457789999999999999999999999876442222   6778889999999999999999999985 67887777665


Q ss_pred             HHHhhH
Q 013954          354 RQFMFS  359 (433)
Q Consensus       354 krLlyi  359 (433)
                      .++.-.
T Consensus       119 ~~~~~~  124 (131)
T 1elr_A          119 QQAEKI  124 (131)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.80  E-value=0.0001  Score=56.81  Aligned_cols=66  Identities=17%  Similarity=0.156  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      ++..+..|..++..|+|.+|+.+|++|+..-+..    ..+...++.||-..|+.++|+..|++.. .+|+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~   70 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN   70 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            4556667777777777777777777777766543    3556667777777777777777777764 3554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.79  E-value=6.8e-05  Score=64.39  Aligned_cols=71  Identities=10%  Similarity=0.072  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  348 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  348 (433)
                      ++..|..|..+|..|+|.+|+..|+++++.-+ .+...-++.++++.||...|+.++|+..|+++. .||.-.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~   75 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP   75 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            35688999999999999999999999998654 456677899999999999999999999999985 688643

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.78  E-value=0.00014  Score=59.83  Aligned_cols=102  Identities=13%  Similarity=0.003  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC
Q 013954          251 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  330 (433)
Q Consensus       251 e~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  330 (433)
                      ..+..+.+..|++-+  .++|....   ..+..|..++..|+|.+|+..|++|+.+-+...    .+.+.++.||...|+
T Consensus        34 ~g~~~~A~~~~~~al--~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~~lg~~~~~~g~  104 (148)
T 2vgx_A           34 SGXYEDAHXVFQALC--VLDHYDSR---FFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP----RFPFHAAECLLQXGE  104 (148)
T ss_dssp             TTCHHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTC
T ss_pred             cCChHHHHHHHHHHH--HcCcccHH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHcCC
Confidence            344556666666544  34454332   246779999999999999999999998876544    566889999999999


Q ss_pred             hHHHHHHHHHHh-cCCC----HHHHHHHHHHhhHHH
Q 013954          331 PKEARIMYEKLQ-SHPN----ALVSKRARQFMFSFQ  361 (433)
Q Consensus       331 ~~EAiaLYkkL~-sHP~----~eVrKQAkrLlyiLE  361 (433)
                      .++|+..|++.. ..|.    ..++.++..++-.++
T Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~  140 (148)
T 2vgx_A          105 LAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIK  140 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHH
Confidence            999999999875 4454    566777777766554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.77  E-value=0.00011  Score=55.85  Aligned_cols=68  Identities=12%  Similarity=0.064  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      ..|..|..++..|+|.+|+.+|++++..-+ .+.....+.++++.||-..|+.++|+..|+++. .+|+.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH   72 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence            367889999999999999999999998765 445566899999999999999999999999985 57764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.76  E-value=0.00057  Score=52.23  Aligned_cols=90  Identities=17%  Similarity=0.105  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC
Q 013954          251 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  330 (433)
Q Consensus       251 e~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  330 (433)
                      ..+..+.+..|++-..  ++|.........+..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.||...|+
T Consensus        41 ~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~  114 (148)
T 2dba_A           41 CGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD----VKALYRRSQALEKLGR  114 (148)
T ss_dssp             TTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC----HHHHHHHHHHHHHHTC
T ss_pred             hCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC----HHHHHHHHHHHHHcCC
Confidence            3455667777776654  455544456667888999999999999999999999875543    5677889999999999


Q ss_pred             hHHHHHHHHHHh-cCCC
Q 013954          331 PKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       331 ~~EAiaLYkkL~-sHP~  346 (433)
                      .++|+..|++.. .+|+
T Consensus       115 ~~~A~~~~~~al~~~p~  131 (148)
T 2dba_A          115 LDQAVLDLQRCVSLEPK  131 (148)
T ss_dssp             HHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            999999999985 4664

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.73  E-value=0.00015  Score=57.90  Aligned_cols=64  Identities=11%  Similarity=-0.038  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      +.+......|..+|..|+|.+|+.+|++|+++-|..    ..+-..++.||-..|+.++|+..|++..
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~----~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            344445567999999999999999999999987654    4566779999999999999999999874

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.70  E-value=0.0003  Score=57.54  Aligned_cols=85  Identities=11%  Similarity=0.031  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChH
Q 013954          253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK  332 (433)
Q Consensus       253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~  332 (433)
                      .+.+.++.|.+..  ..+|   +.....|..|..++..|+|.+|+++|++|++.-|..    .++...++.||...|+.+
T Consensus        12 ~~e~ai~~~~~a~--~~~p---~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A           12 DVERYIASVQGST--PSPR---QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD----PKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             HHHHHHHHHHHHS--CSHH---HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHhc--ccCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCchH
Confidence            4455677776555  2233   444557889999999999999999999999987654    567888999999999999


Q ss_pred             HHHHHHHHHh-cCCC
Q 013954          333 EARIMYEKLQ-SHPN  346 (433)
Q Consensus       333 EAiaLYkkL~-sHP~  346 (433)
                      +|+..|++.. .+|+
T Consensus        83 ~A~~~~~~al~~~p~   97 (150)
T 4ga2_A           83 KAVECYRRSVELNPT   97 (150)
T ss_dssp             HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCC
Confidence            9999999975 5775

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.65  E-value=0.00026  Score=51.21  Aligned_cols=66  Identities=20%  Similarity=0.169  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc-CChHHHHHHHHHHh-cCCC
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-HRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-GR~~EAiaLYkkL~-sHP~  346 (433)
                      ..+..|..++..|+|.+|+.+|++++...+.  .....+...++.||... |+.++|+..++++. .||+
T Consensus        42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           42 YWLMKGKALYNLERYEEAVDCYNYVINVIED--EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC--TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence            3567889999999999999999999887655  23456788899999999 99999999999986 5664

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.63  E-value=0.00013  Score=53.95  Aligned_cols=64  Identities=19%  Similarity=0.169  Sum_probs=55.4

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHH-HHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGL-AALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGe-aqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      .|..|..++..|+|.+|+..|+++++.-+..    .. +.++++.||...|+.++|+..|++.. .+|+-
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   68 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS   68 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            4788999999999999999999999986554    34 78889999999999999999999985 56653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.63  E-value=0.00024  Score=57.52  Aligned_cols=82  Identities=15%  Similarity=0.043  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954          252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  331 (433)
Q Consensus       252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  331 (433)
                      .+..+.+..|++-+  .++|..   ..-.+..|..++..|+|.+|+.+|++|+..-+..    ..+.+.++.||...|+.
T Consensus        25 g~~~~A~~~~~~al--~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~   95 (164)
T 3sz7_A           25 KEYSKAIDLYTQAL--SIAPAN---PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY----SKAWSRLGLARFDMADY   95 (164)
T ss_dssp             TCHHHHHHHHHHHH--HHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHH--HhCCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCH
Confidence            34455555555443  333332   2234555666666666666666666666665432    45556666666666777


Q ss_pred             HHHHHHHHHHh
Q 013954          332 KEARIMYEKLQ  342 (433)
Q Consensus       332 ~EAiaLYkkL~  342 (433)
                      ++|+..|++..
T Consensus        96 ~~A~~~~~~al  106 (164)
T 3sz7_A           96 KGAKEAYEKGI  106 (164)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77766666653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.61  E-value=0.001  Score=47.39  Aligned_cols=67  Identities=21%  Similarity=0.200  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      ....+..|..++..|+|.+|+.+|+++++.-+..    ..+...++.||...|+.++|+..|++.. .+|+.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            3456778999999999999999999999886543    4677889999999999999999999985 56653

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.60  E-value=0.00029  Score=60.84  Aligned_cols=69  Identities=14%  Similarity=0.107  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      ++..|..|..+|..|+|.+|+..|+++++.-+ .+....++.++++.||-..|+.++|+..|+++. .+|.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~   84 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI   84 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC
Confidence            45689999999999999999999999998765 445668999999999999999999999999996 5774

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.60  E-value=0.00087  Score=51.09  Aligned_cols=76  Identities=11%  Similarity=0.007  Sum_probs=60.6

Q ss_pred             HHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHH
Q 013954          258 LAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIM  337 (433)
Q Consensus       258 LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaL  337 (433)
                      +..|++-+  .++|..   ....+..|..++..|+|.+|+.+|++|+..-+..    ..+.+.|+.||...|+.++|+..
T Consensus         5 ~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~   75 (115)
T 2kat_A            5 TERLEAML--AQGTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY----SVAWKWLGKTLQGQGDRAGARQA   75 (115)
T ss_dssp             HHHHHHHH--TTTCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHH--HhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHcCCHHHHHHH
Confidence            44454443  344543   2357788999999999999999999999886543    56778999999999999999999


Q ss_pred             HHHHh
Q 013954          338 YEKLQ  342 (433)
Q Consensus       338 YkkL~  342 (433)
                      |++..
T Consensus        76 ~~~al   80 (115)
T 2kat_A           76 WESGL   80 (115)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99985

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.53  E-value=0.00038  Score=50.61  Aligned_cols=66  Identities=14%  Similarity=0.114  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      ++..+..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.||-..|+.++|+..|++.. .+|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   70 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD   70 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            4455666777777777777777777776665432    3455666777777777777777777664 3443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.51  E-value=0.00031  Score=59.42  Aligned_cols=67  Identities=10%  Similarity=0.059  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      ..+..+..|..++..|+|.+|+.+|++|+++-|.+    ..+-+.|+.||...||.++|+..|++.. -.|+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN----VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            45568999999999999999999999999987654    3466779999999999999999999985 4665

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.49  E-value=0.0011  Score=56.94  Aligned_cols=65  Identities=8%  Similarity=0.006  Sum_probs=57.1

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          281 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       281 ~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      +..|..++.+|+|.+|+..|+++++.-|. +....++...++.||..+|+.++|+..+++|. .+|.
T Consensus       151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          151 YSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence            67899999999999999999999988765 44566899999999999999999999999996 4443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.49  E-value=0.00045  Score=51.68  Aligned_cols=63  Identities=13%  Similarity=0.105  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .....+..|..++..|+|.+|+.+|++++..-+..    ..+...++.||...|+.++|+.+|++..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~   77 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCEECI   77 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34445556666666666666666666666554332    4455556666666666666666666653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.48  E-value=0.0006  Score=54.41  Aligned_cols=73  Identities=16%  Similarity=0.129  Sum_probs=60.5

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013954          267 LNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  345 (433)
Q Consensus       267 l~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  345 (433)
                      +.++|..   .+..+..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.||...|+.++|+..|++.. ..|
T Consensus        11 l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   83 (142)
T 2xcb_A           11 RGLSEDT---LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD----ARYFLGLGACRQSLGLYEQALQSYSYGALMDI   83 (142)
T ss_dssp             TTCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HcCCHHH---HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            4556553   4557899999999999999999999999887654    4567789999999999999999999985 455


Q ss_pred             C
Q 013954          346 N  346 (433)
Q Consensus       346 ~  346 (433)
                      +
T Consensus        84 ~   84 (142)
T 2xcb_A           84 N   84 (142)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.48  E-value=0.001  Score=50.81  Aligned_cols=70  Identities=17%  Similarity=0.206  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      .++..+..|..++..|+|.+|+++|+++++..+.. ..-..+.++++.||-..|+.++|+..|++.. .+|.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   97 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP-QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG   97 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence            35567889999999999999999999999876532 2236788889999999999999999999975 5664

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.48  E-value=0.00057  Score=50.56  Aligned_cols=63  Identities=14%  Similarity=0.032  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .++..+..|..++..|+|.+|+.+|+++++..+..    ..+.+.++.||-..|+.++|+..|++..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~   65 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAI   65 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            45667889999999999999999999999987543    4677889999999999999999999985

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.47  E-value=0.00058  Score=52.33  Aligned_cols=66  Identities=14%  Similarity=0.238  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      ++..+..|..++..|+|.+|+.+|++++..-+..    ..+...++.||-..|+.++|+..|++.. .+|+
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~   75 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQ   75 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence            3456777888888888888888888888776543    4567778888888888888888888775 4555

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.46  E-value=0.00077  Score=52.50  Aligned_cols=57  Identities=11%  Similarity=-0.083  Sum_probs=27.1

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          281 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       281 ~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      +..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.||...|+.++|+..|++.
T Consensus        51 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a  107 (166)
T 1a17_A           51 GNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAALRDYETV  107 (166)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            334444555555555555555554443221    233444555555555555555555444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.45  E-value=0.00057  Score=56.11  Aligned_cols=72  Identities=13%  Similarity=0.098  Sum_probs=59.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          268 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       268 ~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      .++|.   .....+..|..++..|+|.+|+.+|++++..-+.+.    .+...++.||...|+.++|+..|++.. ..|+
T Consensus        15 ~~~p~---~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A           15 EISSD---TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS----RFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             TCCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             cCCHh---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            44554   345578899999999999999999999998876653    556789999999999999999999985 4554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.001  Score=51.15  Aligned_cols=86  Identities=13%  Similarity=0.045  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954          250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  329 (433)
Q Consensus       250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  329 (433)
                      +..+..+.+..|.+-.  .++|..   ..-.+..|..++..|+|.+|+..|++|++.-+..    ..+.+.++.||...|
T Consensus        16 ~~~~~~~A~~~~~~al--~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~   86 (126)
T 3upv_A           16 TKSDWPNAVKAYTEMI--KRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----VRAYIRKATAQIAVK   86 (126)
T ss_dssp             HTTCHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred             HhcCHHHHHHHHHHHH--HhCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHh
Confidence            3445566777776554  445543   2446778999999999999999999999987654    567889999999999


Q ss_pred             ChHHHHHHHHHHh-cC
Q 013954          330 RPKEARIMYEKLQ-SH  344 (433)
Q Consensus       330 R~~EAiaLYkkL~-sH  344 (433)
                      +.++|+..|++.. .+
T Consensus        87 ~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           87 EYASALETLDAARTKD  102 (126)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999999885 45

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.43  E-value=0.00024  Score=56.42  Aligned_cols=88  Identities=13%  Similarity=0.007  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954          250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  329 (433)
Q Consensus       250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  329 (433)
                      +..+..+.+..|++-+  .++|..   .+..+..|..++..|++.+|+..|++|+++-|..    ..+.+.|+.||...|
T Consensus        29 ~~g~~~~A~~~~~~al--~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           29 KLANLAEAALAFEAVC--QKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNEH   99 (121)
T ss_dssp             HTTCHHHHHHHHHHHH--HHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHH--HHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC
Confidence            3344555566665443  344443   2335677888888888888888888888776654    346677888888888


Q ss_pred             ChHHHHHHHHHHh-cCCC
Q 013954          330 RPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       330 R~~EAiaLYkkL~-sHP~  346 (433)
                      +.++|+..|+++. .+|.
T Consensus       100 ~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A          100 NANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHC----
T ss_pred             CHHHHHHHHHHHHHhCcC
Confidence            8888888888764 4553

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.42  E-value=0.0012  Score=52.93  Aligned_cols=89  Identities=15%  Similarity=0.119  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954          250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  329 (433)
Q Consensus       250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  329 (433)
                      +..+..+.+..|.+-.  .++|..-   ..-+..|..++..|+|.+|+..|++|+++-+..    ..+-+.++.||...|
T Consensus        25 ~~g~~~~A~~~~~~al--~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~   95 (126)
T 4gco_A           25 KKGDYPTAMRHYNEAV--KRDPENA---ILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF----IKGYIRKAACLVAMR   95 (126)
T ss_dssp             HTTCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHH--HhCCCCH---HHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHCC
Confidence            3456778888887654  5666643   346778999999999999999999999886554    467889999999999


Q ss_pred             ChHHHHHHHHHHh-cCCCH
Q 013954          330 RPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       330 R~~EAiaLYkkL~-sHP~~  347 (433)
                      +.++|+..|++.. -+|+-
T Consensus        96 ~~~~A~~~~~~al~l~P~~  114 (126)
T 4gco_A           96 EWSKAQRAYEDALQVDPSN  114 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHHCcCC
Confidence            9999999999985 57753

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.40  E-value=0.0031  Score=47.04  Aligned_cols=87  Identities=11%  Similarity=0.054  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954          252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  331 (433)
Q Consensus       252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  331 (433)
                      .+..+.+..|.+-.  .++|..   ....+..|..++..|+|.+|+.+|++++..-+.    ...+.+.++.||...|+.
T Consensus        30 ~~~~~A~~~~~~al--~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~  100 (133)
T 2lni_A           30 GDYPQAMKHYTEAI--KRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT----FIKGYTRKAAALEAMKDY  100 (133)
T ss_dssp             TCSHHHHHHHHHHH--TTCTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHH--HcCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHHhhH
Confidence            34455666666544  344443   345678899999999999999999999987654    356788899999999999


Q ss_pred             HHHHHHHHHHh-cCCCH
Q 013954          332 KEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       332 ~EAiaLYkkL~-sHP~~  347 (433)
                      ++|+..|++.. .+|+.
T Consensus       101 ~~A~~~~~~~~~~~p~~  117 (133)
T 2lni_A          101 TKAMDVYQKALDLDSSC  117 (133)
T ss_dssp             HHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHhCCCc
Confidence            99999999985 56653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.39  E-value=0.0014  Score=48.18  Aligned_cols=68  Identities=18%  Similarity=0.195  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      ......+..|..++..|+|.+|+.+|++++..-+..    ..+...++.||-..|+.++|+..|++.. .+|+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   78 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA   78 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence            445566777888888888888888888887765433    4566777888888888888888888774 4554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.37  E-value=0.00044  Score=61.57  Aligned_cols=69  Identities=16%  Similarity=0.067  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccc-------c-chhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK-------S-ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~-------S-~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .+++...+..|..+|..|+|.+|+..|++|+++.+..       . ...-.+-..++.||..+||.+||+..|++..
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL   84 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   84 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3678889999999999999999999999999998872       1 1123367779999999999999999999875

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.35  E-value=0.0014  Score=47.30  Aligned_cols=63  Identities=19%  Similarity=0.133  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      .+..|..++..|+|.+|+.+|+++++.-+..    ..+.+.++.+|...|+.++|+..|++.. .+|.
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            3567899999999999999999999987553    4577889999999999999999999985 5665

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.35  E-value=0.00088  Score=55.80  Aligned_cols=58  Identities=14%  Similarity=0.003  Sum_probs=31.1

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      .+..|..++..|+|.+|+.+|++|++.-+    -...+.+.++.||...|+.++|+..|++.
T Consensus        91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  148 (198)
T 2fbn_A           91 NLNLATCYNKNKDYPKAIDHASKVLKIDK----NNVKALYKLGVANMYFGFLEEAKENLYKA  148 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            33445555555555555555555555421    23445555555555555555555555554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.34  E-value=0.00054  Score=58.44  Aligned_cols=67  Identities=12%  Similarity=0.259  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHH----------------HHHHHHhcCChHHHHHHHHH
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ----------------WSICQDSLHRPKEARIMYEK  340 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLw----------------LAiAydA~GR~~EAiaLYkk  340 (433)
                      ++..+..|..++..|+|.+|+.+|++++..-|.+    .++.+|                ++.||...|+.++|+..|++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~   79 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR----TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE   79 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH----HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4568899999999999999999999999887654    345667                99999999999999999999


Q ss_pred             Hh-cCCCH
Q 013954          341 LQ-SHPNA  347 (433)
Q Consensus       341 L~-sHP~~  347 (433)
                      .. .+|+-
T Consensus        80 al~~~p~~   87 (208)
T 3urz_A           80 LLQKAPNN   87 (208)
T ss_dssp             HHHHCTTC
T ss_pred             HHHHCCCC
Confidence            85 67753

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.33  E-value=0.0032  Score=50.83  Aligned_cols=70  Identities=13%  Similarity=0.152  Sum_probs=61.4

Q ss_pred             hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          273 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       273 ~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      ....++..+..|..++..|+|.+|+.+|++|+++-+..    ..+.+.++.||-..|+.++|+..|++.. .+|+
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~   77 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK   77 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            34567778999999999999999999999999987654    5678889999999999999999999985 5666

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.32  E-value=0.00076  Score=53.54  Aligned_cols=65  Identities=22%  Similarity=0.208  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      ...+..|..++..|++.+|+..|++|+..-+..    .++.+.++.||...|+.++|+..|++.. ..|+
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~   83 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   83 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            346889999999999999999999999987654    5677889999999999999999999985 5664

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.29  E-value=0.0019  Score=54.29  Aligned_cols=64  Identities=17%  Similarity=0.303  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcc-cccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMV-FKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~-~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      ..+..|..++..|+|.+|+.+|+++++.-+ ...    .+..+++.||...|+.++|+..|++.. .+|+
T Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   74 (228)
T 4i17_A            9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN   74 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc
Confidence            345556666666666666666666655554 222    344555566666666666666655553 3444

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.27  E-value=0.00059  Score=67.48  Aligned_cols=125  Identities=18%  Similarity=0.116  Sum_probs=84.8

Q ss_pred             ccccccCCC--------CCCccccCCC-------cccCCCCccC-----cHHHHHHHHHHHHHHHHHHH-----------
Q 013954          214 STWGVFPRP--------GNISKTFGGG-------RTIRPGDVLE-----TAEARAAKEERTRQLLAAYK-----------  262 (433)
Q Consensus       214 sTWGvFPRP--------~NISkayGGG-------R~IrpGe~lE-----teEEkaaRe~rtke~LaaYr-----------  262 (433)
                      ..+|+||..        .|....|.|+       |.|++|+++.     ...-..+|.+.+   ...|.           
T Consensus       194 ~g~~l~~~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~GeEl~isY~~~~~~~~~R~~~L---~~~~~F~C~C~~C~~~  270 (429)
T 3qwp_A          194 VGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQL---RDQYCFECDCFRCQTQ  270 (429)
T ss_dssp             EEEEECTTGGGCEECSSCSEEEEEETTEEEEEECSCBCTTCEEEECCSCSSCCHHHHHHHH---HHHHCCCCCSHHHHHT
T ss_pred             ceEEEchhhHhhCcCCCCCeEEEEeCCEEEEEEeeeECCCCEEEEEecCCCCCHHHHHHHH---hccCCeEeeCCCCCCC
Confidence            358888864        3777778877       7899999862     111122333332   22221           


Q ss_pred             --hhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc----ccccchhHHHHHHHHHHHHhcCChHHHHH
Q 013954          263 --KSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM----VFKSELHGLAALQWSICQDSLHRPKEARI  336 (433)
Q Consensus       263 --k~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v----~~~S~LGGeaqLwLAiAydA~GR~~EAia  336 (433)
                        ...=+..++.....+++++..-..+...|+|.+|+++|+++++..    ......-..+--.|+.+|...|+.++|+.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~  350 (429)
T 3qwp_A          271 DKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALF  350 (429)
T ss_dssp             TTHHHHTCSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cccccccccchhhhHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHH
Confidence              000023334445667888888899999999999999999998653    23333336677789999999999999999


Q ss_pred             HHHHH
Q 013954          337 MYEKL  341 (433)
Q Consensus       337 LYkkL  341 (433)
                      +|++.
T Consensus       351 ~~~~~  355 (429)
T 3qwp_A          351 YGTRT  355 (429)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99876

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.24  E-value=0.0016  Score=52.64  Aligned_cols=64  Identities=17%  Similarity=0.160  Sum_probs=54.8

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      -+..|..++.+|+|.+|+.+|++|++.-|..    .++...++.||...|+.++|+..|+++. .+|+.
T Consensus         8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~   72 (184)
T 3vtx_A            8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNN----VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS   72 (184)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh
Confidence            4678999999999999999999999886654    4678889999999999999999999985 45554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.22  E-value=0.0036  Score=45.38  Aligned_cols=66  Identities=17%  Similarity=0.059  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      ...+..|..++..|+|.+|+.+|+++++.-+.    ...+...++.||...|+.++|+..|++.. .+|+.
T Consensus        39 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  105 (118)
T 1elw_A           39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD----WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN  105 (118)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence            34677899999999999999999999998654    35778889999999999999999999985 56643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.20  E-value=0.002  Score=55.19  Aligned_cols=87  Identities=20%  Similarity=0.117  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954          252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  331 (433)
Q Consensus       252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  331 (433)
                      .+..+.+..|++-.  .++|..-   ...+..|..++..|++.+|+..|++|++.- .    ..++.+.++.||...|+.
T Consensus        98 g~~~~A~~~~~~al--~~~P~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~----~~~~~~~la~~~~~~g~~  167 (217)
T 2pl2_A           98 GYLEQALSVLKDAE--RVNPRYA---PLHLQRGLVYALLGERDKAEASLKQALALE-D----TPEIRSALAELYLSMGRL  167 (217)
T ss_dssp             HHHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHHHTCH
T ss_pred             cCHHHHHHHHHHHH--HhCcccH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c----chHHHHHHHHHHHHcCCH
Confidence            56777777887655  4556533   335778999999999999999999999876 2    356778999999999999


Q ss_pred             HHHHHHHHHHh-cCCCHH
Q 013954          332 KEARIMYEKLQ-SHPNAL  348 (433)
Q Consensus       332 ~EAiaLYkkL~-sHP~~e  348 (433)
                      ++|+..|+++. .+|+-.
T Consensus       168 ~~A~~~~~~al~~~P~~~  185 (217)
T 2pl2_A          168 DEALAQYAKALEQAPKDL  185 (217)
T ss_dssp             HHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHhCCCCh
Confidence            99999999985 677643

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.19  E-value=0.0055  Score=45.04  Aligned_cols=66  Identities=17%  Similarity=0.087  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      ...+..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.+|...|+.++|+..|++.. .+|+.
T Consensus        47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  113 (131)
T 2vyi_A           47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN  113 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence            346778999999999999999999999876543    5678889999999999999999999985 56643

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.16  E-value=0.0083  Score=46.62  Aligned_cols=71  Identities=8%  Similarity=-0.020  Sum_probs=61.4

Q ss_pred             chHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          272 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       272 ~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      .....++..+..|..++..|+|.+|+.+|+++++.-+..    ..+.+.++.||-..|+.++|+..|++.. .+|.
T Consensus         8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   79 (166)
T 1a17_A            8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKK   79 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            344677888999999999999999999999999986554    6778889999999999999999999985 5664

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.15  E-value=0.0014  Score=55.44  Aligned_cols=64  Identities=11%  Similarity=-0.046  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhccccc--chhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      -.+..|..++..|+|.+|+.+|+++++......  ..-..+...++.+|...|+.++|+..|++..
T Consensus        45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  110 (338)
T 3ro2_A           45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL  110 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            344445555555555555555555544432221  1223344445555555555555555555554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.14  E-value=0.0017  Score=52.50  Aligned_cols=64  Identities=17%  Similarity=0.056  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCC
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPN  346 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~  346 (433)
                      ..+..|..++..|+|.+|+..|+++++.-+..    ..+...++.||...|+.++|+..|++. +.+|+
T Consensus       109 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          109 AYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF----IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHHhcchh----hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence            35667999999999999999999999886654    467788999999999999999999986 45663

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.12  E-value=0.0022  Score=49.01  Aligned_cols=88  Identities=11%  Similarity=0.062  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954          250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  329 (433)
Q Consensus       250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  329 (433)
                      +..+..+.+..|++-+  .++|..   ..-.+..|..++..|+|.+|+.+|++|+..-+.    ...+.+.++.||...|
T Consensus        21 ~~~~~~~A~~~~~~al--~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~   91 (137)
T 3q49_B           21 VGRKYPEAAACYGRAI--TRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDGQ----SVKAHFFLGQCQLEME   91 (137)
T ss_dssp             HTTCHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTT
T ss_pred             HhCcHHHHHHHHHHHH--hhCcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHHh
Confidence            3344556666666544  344443   344677899999999999999999999998655    4568889999999999


Q ss_pred             ChHHHHHHHHHHh-cCCC
Q 013954          330 RPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       330 R~~EAiaLYkkL~-sHP~  346 (433)
                      +.++|+..|++.. .+|+
T Consensus        92 ~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           92 SYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHChh
Confidence            9999999999985 3443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.12  E-value=0.0032  Score=50.73  Aligned_cols=67  Identities=18%  Similarity=0.139  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      +.-.+..|..++..|+|.+|+.+|++|+.+-+..    ..+-+.++.||..+|+.++|+..|++.. .+|+-
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  130 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETN----EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA  130 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence            3456778999999999999999999999986543    4678899999999999999999999975 57763

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.11  E-value=0.0033  Score=54.17  Aligned_cols=68  Identities=21%  Similarity=0.302  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      ..+..|..++..|+|.+|+..|+++++..+....+...+.+.++.||...|+.++|+.+|++.. .+|+
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  304 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD  304 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            3456688999999999999999999998888777777777889999999999999999999986 4664

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.10  E-value=0.0073  Score=44.01  Aligned_cols=65  Identities=20%  Similarity=0.186  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      ..+..|..++..|+|.+|+.+|++++...+..    ..+...++.+|...|+.++|+..|+++. .+|+.
T Consensus        45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  110 (125)
T 1na0_A           45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN  110 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            35566888888888888888888887765433    3456677888888888888888888774 45543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.09  E-value=0.0015  Score=58.81  Aligned_cols=66  Identities=12%  Similarity=0.040  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccc--cchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK--SELHGLAALQWSICQDSLHRPKEARIMYEKLQS  343 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~--S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  343 (433)
                      ...+..|..++..|+|.+|+.+|++|++.....  ...-..+...++.+|...|+.++|+..|++...
T Consensus        87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  154 (411)
T 4a1s_A           87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT  154 (411)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            344455555666666666666666655544322  122344455556666666666666666666553

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.09  E-value=0.0075  Score=50.13  Aligned_cols=57  Identities=14%  Similarity=0.195  Sum_probs=44.5

Q ss_pred             CCchhhhhhHHHHHHhhccccc------------chhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          290 SGKLKEALPFYEKVMNKMVFKS------------ELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       290 rGkYreAV~~lEkA~~~v~~~S------------~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      .|+|.+|+.+|++|+...+...            .+-..+..+++.||-..|+.++|+..|++.. .+|.
T Consensus        51 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  120 (198)
T 2fbn_A           51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN  120 (198)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence            3678888888888887665544            2334677889999999999999999999985 5664

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.09  E-value=0.0047  Score=52.59  Aligned_cols=65  Identities=18%  Similarity=0.142  Sum_probs=56.7

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013954          281 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV  349 (433)
Q Consensus       281 ~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV  349 (433)
                      +..|..++..|+|.+|+..|++|+++-|..    ..+.+.++.||...|+.++|+..|+++. .+|+-..
T Consensus        58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~  123 (208)
T 3urz_A           58 TELALAYKKNRNYDKAYLFYKELLQKAPNN----VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA  123 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            338999999999999999999999987654    4778899999999999999999999985 6886543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.02  E-value=0.0031  Score=47.66  Aligned_cols=68  Identities=13%  Similarity=-0.025  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc--chhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      ..+...+..|..++..|+|.+|+.+|+++++......  ..-+.+..+++.+|-..|+.++|+..|++..
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   76 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL   76 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555677888999999999999999999988775432  2224577788999999999999999998864

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.02  E-value=0.0086  Score=58.21  Aligned_cols=78  Identities=12%  Similarity=-0.061  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHhCCch-hhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHH
Q 013954          278 EKALKDGDSLMDSGKL-KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQ  355 (433)
Q Consensus       278 eea~~~Gk~amerGkY-reAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkr  355 (433)
                      +..+..|..++..|+| .+|+.+|++|+++-+..    ..+...|+.||-..|+.++|+..|++.. ..|+..+...-..
T Consensus       103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~  178 (474)
T 4abn_A          103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSM  178 (474)
T ss_dssp             HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            3456679999999999 99999999999986543    5688899999999999999999999985 6888554444444


Q ss_pred             HhhH
Q 013954          356 FMFS  359 (433)
Q Consensus       356 Llyi  359 (433)
                      +++-
T Consensus       179 ~~~~  182 (474)
T 4abn_A          179 VLRQ  182 (474)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            4333

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.02  E-value=0.0024  Score=52.78  Aligned_cols=63  Identities=13%  Similarity=0.076  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .+++..+..|..++..|+|.+|+.+|+++++.- .    ...+...++.||...|+.++|+..|+++.
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~   65 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K----DITYLNNRAAAEYEKGEYETAISTLNDAV   65 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C----CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c----cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            567788999999999999999999999999886 2    25788899999999999999999999985

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.01  E-value=0.0045  Score=45.11  Aligned_cols=66  Identities=21%  Similarity=0.205  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      ....+..|..++..|+|.+|+.+|++++..-+..    ..+...++.||...|+.++|+.+|++.. .+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~   75 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN   75 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence            3446778999999999999999999999876533    4577889999999999999999999985 4553

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.00  E-value=0.0058  Score=50.20  Aligned_cols=90  Identities=11%  Similarity=0.038  Sum_probs=62.8

Q ss_pred             HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc------------chhHHHHHHH
Q 013954          254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS------------ELHGLAALQW  321 (433)
Q Consensus       254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S------------~LGGeaqLwL  321 (433)
                      ..+.+..|++-.  .++|..   ....+..|..++..|+|.+|+.+|++|++..+.+.            .-...+...+
T Consensus        53 ~~~A~~~~~~al--~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (213)
T 1hh8_A           53 MTEAEKAFTRSI--NRDKHL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI  127 (213)
T ss_dssp             HHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHH--HhCccc---hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH
Confidence            344444554433  223332   23456778888899999999999999888776543            2235778888


Q ss_pred             HHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013954          322 SICQDSLHRPKEARIMYEKLQ-SHPNAL  348 (433)
Q Consensus       322 AiAydA~GR~~EAiaLYkkL~-sHP~~e  348 (433)
                      +.||...|+.++|+..|++.. .+|...
T Consensus       128 ~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          128 AFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            999999999999999998875 567653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=96.98  E-value=0.0075  Score=49.76  Aligned_cols=98  Identities=12%  Similarity=0.076  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccch---hHHHHHHHHHHHHhcC
Q 013954          253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL---HGLAALQWSICQDSLH  329 (433)
Q Consensus       253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~L---GGeaqLwLAiAydA~G  329 (433)
                      +..+.+..|++-..++ +.     ....+..|..++..|+|.+|+.+|+++++..+....-   -..+...++.||...|
T Consensus        20 ~~~~A~~~~~~a~~~~-~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   93 (258)
T 3uq3_A           20 QFDEAIEHYNKAWELH-KD-----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG   93 (258)
T ss_dssp             CHHHHHHHHHHHHHHS-CC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHhh-cc-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc
Confidence            3445555555544333 11     2346778999999999999999999999987654211   2688889999999999


Q ss_pred             ChHHHHHHHHHHh-cCCCHHHHHHHHHH
Q 013954          330 RPKEARIMYEKLQ-SHPNALVSKRARQF  356 (433)
Q Consensus       330 R~~EAiaLYkkL~-sHP~~eVrKQAkrL  356 (433)
                      +.++|+..|++.. .+|...+-.+..++
T Consensus        94 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~  121 (258)
T 3uq3_A           94 DLKKTIEYYQKSLTEHRTADILTKLRNA  121 (258)
T ss_dssp             CHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCchhHHHHHHhHH
Confidence            9999999999986 68887665554444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.97  E-value=0.0022  Score=56.63  Aligned_cols=89  Identities=11%  Similarity=-0.010  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCcchH-HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc--chhHHHHHHHHHHHHhc
Q 013954          252 ERTRQLLAAYKKSVGLNVDPKLK-SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSL  328 (433)
Q Consensus       252 ~rtke~LaaYrk~~Gl~Vdp~~k-~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~  328 (433)
                      .+..+.+..|++-..  ++|... ..+...+..|..++..|+|.+|+.+|++|++......  ..-..+...++.+|...
T Consensus        23 g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  100 (406)
T 3sf4_A           23 GDCRAGVSFFEAAVQ--VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL  100 (406)
T ss_dssp             TCHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence            344555666655443  334322 2344555666666667777777777776666553322  22345555666667777


Q ss_pred             CChHHHHHHHHHHh
Q 013954          329 HRPKEARIMYEKLQ  342 (433)
Q Consensus       329 GR~~EAiaLYkkL~  342 (433)
                      |+.++|+..|++..
T Consensus       101 g~~~~A~~~~~~al  114 (406)
T 3sf4_A          101 GNFDEAIVCCQRHL  114 (406)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            77777777776666

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.0028  Score=58.13  Aligned_cols=81  Identities=11%  Similarity=0.077  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954          252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  331 (433)
Q Consensus       252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  331 (433)
                      .+..+.+..|++-.-  ++|.    ....+..|..++..|+|.+|+..|+++++.-+..    ..+.+.++.||...|+.
T Consensus        20 g~~~~A~~~~~~al~--~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~   89 (514)
T 2gw1_A           20 KKYDDAIKYYNWALE--LKED----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY----SKVLLRRASANEGLGKF   89 (514)
T ss_dssp             SCHHHHHHHHHHHHH--HCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCH
T ss_pred             ccHHHHHHHHHHHHh--cCcc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH----HHHHHHHHHHHHHHhhH
Confidence            344555555654442  2332    3345556667777777777777777766654432    24556667777777777


Q ss_pred             HHHHHHHHHHh
Q 013954          332 KEARIMYEKLQ  342 (433)
Q Consensus       332 ~EAiaLYkkL~  342 (433)
                      ++|+..|+++.
T Consensus        90 ~~A~~~~~~~~  100 (514)
T 2gw1_A           90 ADAMFDLSVLS  100 (514)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777777664

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.92  E-value=0.0023  Score=61.09  Aligned_cols=64  Identities=16%  Similarity=0.096  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhccc------------ccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVF------------KSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~------------~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      +..+..|..++..|+|.+|+.+|++|+..++.            .......+.+.++.||-..|+.++|+..|++.
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  299 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            33444455555555555555555555543322            11222344444555555555555555555554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.89  E-value=0.0047  Score=55.64  Aligned_cols=71  Identities=17%  Similarity=0.204  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHH
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVS  350 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVr  350 (433)
                      ..+..+..|..++..|++.+|+..|+++++.-|.+    ..+.+.|+.+|-..||.++|+.+|+++. .+|+....
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~  187 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN----GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ  187 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH
Confidence            34567899999999999999999999999988765    4678899999999999999999999995 68876544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=96.89  E-value=0.0053  Score=58.87  Aligned_cols=95  Identities=16%  Similarity=0.091  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh
Q 013954          248 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  327 (433)
Q Consensus       248 aaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  327 (433)
                      ..+.+|..+.+..+++..... |+.  ....-.|-.|..+-..|++.+|+.+|++|...- ..-..--++++++++||..
T Consensus       145 ~~~~~r~~dA~~~l~~a~~~~-d~~--~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~  220 (282)
T 4f3v_A          145 YGAAERWTDVIDQVKSAGKWP-DKF--LAGAAGVAHGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRS  220 (282)
T ss_dssp             HHHTTCHHHHHHHHTTGGGCS-CHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHhhccC-Ccc--cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHH
Confidence            455667777777776443222 333  233456888999999999999999999997321 0011256899999999999


Q ss_pred             cCChHHHHHHHHHHh-cCCC
Q 013954          328 LHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       328 ~GR~~EAiaLYkkL~-sHP~  346 (433)
                      .||.+||+++|+++. .+|.
T Consensus       221 lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          221 QGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HTCHHHHHHHHHHHHHHSCC
T ss_pred             cCCHHHHHHHHHHHHhcCCc
Confidence            999999999999996 7998

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=96.87  E-value=0.0038  Score=56.24  Aligned_cols=87  Identities=11%  Similarity=0.046  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954          250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  329 (433)
Q Consensus       250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  329 (433)
                      +..+..+.+..|++-+  .++|.   .....+..|..++..|+|.+|+..|++|++.-+..    ..+...++.+|...|
T Consensus        16 ~~g~~~~A~~~~~~al--~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g   86 (281)
T 2c2l_A           16 VGRKYPEAAACYGRAI--TRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEME   86 (281)
T ss_dssp             HTTCHHHHHHHHHHHH--HHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHH--HhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC
Confidence            3344556666666444  23332   24455667888888888888888888888765433    356677888888888


Q ss_pred             ChHHHHHHHHHHh-cCC
Q 013954          330 RPKEARIMYEKLQ-SHP  345 (433)
Q Consensus       330 R~~EAiaLYkkL~-sHP  345 (433)
                      +.++|+..|++.. .+|
T Consensus        87 ~~~~A~~~~~~al~l~p  103 (281)
T 2c2l_A           87 SYDEAIANLQRAYSLAK  103 (281)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCc
Confidence            8888888887753 344

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=96.86  E-value=0.00071  Score=58.04  Aligned_cols=85  Identities=18%  Similarity=0.155  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954          252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  331 (433)
Q Consensus       252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  331 (433)
                      .+..+.+..|++-.-++ +     ..+-.+..|..++..|+|.+|+..|+++++.-|...    .+.+.++.+|...|+.
T Consensus       132 g~~~~A~~~~~~al~~~-~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~  201 (217)
T 2pl2_A          132 GERDKAEASLKQALALE-D-----TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL----DLRVRYASALLLKGKA  201 (217)
T ss_dssp             TCHHHHHHHHHHHHHHC-C-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHTC----
T ss_pred             CChHHHHHHHHHHHhcc-c-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHccCH
Confidence            34556666676655444 2     123457889999999999999999999999876543    6778899999999999


Q ss_pred             HHHHHHHHHHhcCCC
Q 013954          332 KEARIMYEKLQSHPN  346 (433)
Q Consensus       332 ~EAiaLYkkL~sHP~  346 (433)
                      ++|+..|++.-.|-+
T Consensus       202 ~~A~~~~~~~~~~~~  216 (217)
T 2pl2_A          202 EEAARAAALEHHHHH  216 (217)
T ss_dssp             ---------------
T ss_pred             HHHHHHHHHHhhccC
Confidence            999999999987643

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.86  E-value=0.003  Score=53.31  Aligned_cols=61  Identities=10%  Similarity=-0.074  Sum_probs=33.2

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      .+..|..++..|+|.+|+.+|+++++ .+.+..+-+.+-+.++.||...|+.++|+..|++.
T Consensus        40 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  100 (272)
T 3u4t_A           40 YNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAA  100 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            34445555555555555555555555 33444444555555555555555555555555555

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=96.86  E-value=0.009  Score=49.63  Aligned_cols=69  Identities=12%  Similarity=0.037  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc----cccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS  343 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  343 (433)
                      ..+...+..|..++..|+|.+|+.+|++|++...    ........+...++.||...|+.++|+.+|++...
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  155 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE  155 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4556677889999999999999999999988752    22345578888999999999999999999999854

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=96.85  E-value=0.013  Score=49.06  Aligned_cols=88  Identities=6%  Similarity=0.018  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh---HHHHHHHHHHHHhcCC
Q 013954          254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHR  330 (433)
Q Consensus       254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR  330 (433)
                      ..+.+..|++-.  .++|.   .....+..|..++..|+|.+|+..|+++++.-+.+..+.   +.+-+.++.||...|+
T Consensus        58 ~~~A~~~~~~al--~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~  132 (228)
T 4i17_A           58 YKEAADYFDIAI--KKNYN---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN  132 (228)
T ss_dssp             HHHHHHHHHHHH--HTTCS---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHH--HhCcc---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc
Confidence            334444454433  33444   233356678888888888888888888887776655332   3456667788888888


Q ss_pred             hHHHHHHHHHHh-cCCC
Q 013954          331 PKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       331 ~~EAiaLYkkL~-sHP~  346 (433)
                      .++|+..|++.. .+|+
T Consensus       133 ~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A          133 IEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHHHHHHHHHHTTSSCH
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            888888888875 4665

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=96.83  E-value=0.013  Score=49.20  Aligned_cols=62  Identities=8%  Similarity=-0.111  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      ....+..|..++..|+|.+|+.+|+++++.-+..    ..+...++.+|-..|+.++|+.+|++..
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al  104 (275)
T 1xnf_A           43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVL  104 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3444555666666666666666666666554332    2344455555555555555555555553

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=96.81  E-value=0.0046  Score=53.26  Aligned_cols=86  Identities=23%  Similarity=0.220  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC
Q 013954          251 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  330 (433)
Q Consensus       251 e~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  330 (433)
                      ..+..+.+..|++-..  .+|.   .....+..|..++..|+|.+|+.+|+++++.-+..    ..+...++.||...|+
T Consensus        16 ~g~~~~A~~~~~~~l~--~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~   86 (359)
T 3ieg_A           16 AGQLADALSQFHAAVD--GDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF----TAARLQRGHLLLKQGK   86 (359)
T ss_dssp             TTCHHHHHHHHHHHHH--HCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHHHh--hCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----chHHHHHHHHHHHcCC
Confidence            3445566666665442  2332   25566677888888888888888888888775433    3667788888888888


Q ss_pred             hHHHHHHHHHHh-cCC
Q 013954          331 PKEARIMYEKLQ-SHP  345 (433)
Q Consensus       331 ~~EAiaLYkkL~-sHP  345 (433)
                      .++|+..|+++. .+|
T Consensus        87 ~~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           87 LDEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHHHHHHHHHHHTSCC
T ss_pred             hHHHHHHHHHHHhcCC
Confidence            888888888885 466

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=96.81  E-value=0.0036  Score=56.88  Aligned_cols=65  Identities=22%  Similarity=0.309  Sum_probs=40.6

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCC
Q 013954          281 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHP  345 (433)
Q Consensus       281 ~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP  345 (433)
                      +..|..++..|+|.+|+.+|+++++..+....+-..+...++.||...|+.++|+.+|++. ..+|
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  326 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP  326 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            4446667777777777777777766655544444455556666666666666666666664 3455

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=96.80  E-value=0.0097  Score=49.43  Aligned_cols=86  Identities=14%  Similarity=0.042  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc----cccchhHHHHHHHHHHHHhcC
Q 013954          254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLH  329 (433)
Q Consensus       254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~G  329 (433)
                      .++.|.-+++..+.+    ....+...+..|..++..|+|.+|+.+|++|++...    .....-..+...++.||-..|
T Consensus        24 ~~~al~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g   99 (283)
T 3edt_B           24 CKQALEDLEKTSGHD----HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG   99 (283)
T ss_dssp             HHHHHHHHHHHHCSS----SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc
Confidence            344555554444321    234566678899999999999999999999988752    223455778889999999999


Q ss_pred             ChHHHHHHHHHHhc
Q 013954          330 RPKEARIMYEKLQS  343 (433)
Q Consensus       330 R~~EAiaLYkkL~s  343 (433)
                      +.++|+.+|++...
T Consensus       100 ~~~~A~~~~~~al~  113 (283)
T 3edt_B          100 KYKEAEPLCKRALE  113 (283)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            99999999999853

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.78  E-value=0.0035  Score=60.99  Aligned_cols=63  Identities=13%  Similarity=0.071  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  345 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  345 (433)
                      ..+..|..++..|+|.+|+.+|++|+++-+.+    -.+.+.++.||-.+|+.++|+..|++.. .+|
T Consensus       319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P  382 (457)
T 1kt0_A          319 AFLNLAMCYLKLREYTKAVECCDKALGLDSAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP  382 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            34455666666666666666666666655443    3455666666666666666666666653 344

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=96.78  E-value=0.0036  Score=58.14  Aligned_cols=127  Identities=16%  Similarity=0.103  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcc----------hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHH
Q 013954          251 EERTRQLLAAYKKSVGLNVDPK----------LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ  320 (433)
Q Consensus       251 e~rtke~LaaYrk~~Gl~Vdp~----------~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLw  320 (433)
                      ..+..+.+..|++-..++-+..          ....+...+..|..++..|+|.+|+.+|++|+++-+.+    ..+.+.
T Consensus       160 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~  235 (336)
T 1p5q_A          160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN----EKGLSR  235 (336)
T ss_dssp             HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHH
Confidence            3455677777876664443321          01124556677889999999999999999999887654    467788


Q ss_pred             HHHHHHhcCChHHHHHHHHHHh-cCCCH-HHHHHHHHHhhHHHHHHhhhhcccCCCCcchHHHHHHhhcc
Q 013954          321 WSICQDSLHRPKEARIMYEKLQ-SHPNA-LVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAFVED  388 (433)
Q Consensus       321 LAiAydA~GR~~EAiaLYkkL~-sHP~~-eVrKQAkrLlyiLEAp~llKv~~~~~~~t~Yd~Yf~af~~~  388 (433)
                      ++.||..+|+.++|+..|++.. .+|+- .+...-..+..-+.-.+.       -....|.++|..+.+.
T Consensus       236 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~-------a~~~~~~~~~~~~~~~  298 (336)
T 1p5q_A          236 RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA-------REKKLYANMFERLAEE  298 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhc
Confidence            8999999999999999998874 56653 333222222222111110       0134677777777653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.78  E-value=0.0058  Score=46.12  Aligned_cols=69  Identities=13%  Similarity=0.032  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc--chhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      ...+...+..|..++..|+|.+|+.+|+++++......  ..-+.+...++.+|...|+.++|+..|++..
T Consensus        46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  116 (164)
T 3ro3_A           46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  116 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34455677889999999999999999999998875432  2235677889999999999999999999874

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.77  E-value=0.006  Score=51.82  Aligned_cols=71  Identities=7%  Similarity=0.052  Sum_probs=60.6

Q ss_pred             chHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc----ccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          272 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF----KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       272 ~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~----~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .....++..+..|..++..|+|.+|+.+|+++++....    ....-..+...++.+|-..|+.++|+.+|++..
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al   96 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL   96 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34456677889999999999999999999999987543    345567888999999999999999999999875

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.76  E-value=0.0089  Score=53.08  Aligned_cols=67  Identities=12%  Similarity=0.085  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhh---cccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNK---MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~---v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .+...+..|..++..|+|.+|+.+|++|++.   .+....+...+...++.||...|+.++|+..|++..
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            4555667788888999999999999998843   433333444677788889999999999998888764

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=96.76  E-value=0.0037  Score=58.02  Aligned_cols=68  Identities=13%  Similarity=0.148  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      ..++..+..|..++..|+|.+|+.+|++++..-+..    ..+...++.||-..|+.++|+..|+++. .+|+
T Consensus        23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~   91 (537)
T 3fp2_A           23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE----PVFYSNISACYISTGDLEKVIEFTTKALEIKPD   91 (537)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            345555666666666666666666666666655433    2455556666666666666666666653 3444

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.76  E-value=0.0021  Score=52.88  Aligned_cols=68  Identities=16%  Similarity=0.202  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV  349 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV  349 (433)
                      +..+..|..++..|+|.+|+..|+++++.-|.+    ..+.+.++.+|...|+.++|+..|+++. .+|++.+
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~   75 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR----GDVKLAKADCLLETKQFELAQELLATIPLEYQDNSY   75 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS----HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHH
Confidence            457888999999999999999999999876654    4678889999999999999999999985 5665544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.74  E-value=0.0047  Score=54.94  Aligned_cols=93  Identities=16%  Similarity=0.147  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcc-------hHH--HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh---H
Q 013954          248 AAKEERTRQLLAAYKKSVGLNVDPK-------LKS--ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---G  315 (433)
Q Consensus       248 aaRe~rtke~LaaYrk~~Gl~Vdp~-------~k~--e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG---G  315 (433)
                      ..+..+..+.+..|++-..  ++|.       ...  ....-+..|..+..-|+|.+|+..|++|+++.+...++.   +
T Consensus        21 l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~   98 (159)
T 2hr2_A           21 QLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG   98 (159)
T ss_dssp             HHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred             HHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchH
Confidence            3445677888999987764  4444       111  223566779999999999999999999999833333332   4


Q ss_pred             HHH----HHHHHHHHhcCChHHHHHHHHHHh
Q 013954          316 LAA----LQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       316 eaq----LwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .+-    ..++.||..+||.+||+.-|++..
T Consensus        99 ~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           99 KLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            455    778999999999999999999974

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=96.74  E-value=0.0055  Score=55.29  Aligned_cols=87  Identities=15%  Similarity=-0.039  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh--HHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHH
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKR  352 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQ  352 (433)
                      ..+...+..|..++..|+|.+|+.+|++|++..+......  +.+.+.++.||-..|+.++|+..|++...+|.-.-...
T Consensus       153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e  232 (307)
T 2ifu_A          153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSED  232 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHH
Confidence            3455667889999999999999999999999876544333  34566788899999999999999999775554333334


Q ss_pred             HHHHhhHHH
Q 013954          353 ARQFMFSFQ  361 (433)
Q Consensus       353 AkrLlyiLE  361 (433)
                      ++.+.-.++
T Consensus       233 ~~~l~~l~~  241 (307)
T 2ifu_A          233 CAALEDLLQ  241 (307)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            443333333

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.73  E-value=0.0085  Score=57.17  Aligned_cols=80  Identities=11%  Similarity=0.011  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHHHHH
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSKRAR  354 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrKQAk  354 (433)
                      ....+..|..++..|+|.+|+.+|++|+++-+.+    ..+.+.++.||..+|+.++|+..|++.. ..| +..+...-.
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~  348 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN----TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  348 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3455677999999999999999999999976543    5778899999999999999999999975 566 455555544


Q ss_pred             HHhhHH
Q 013954          355 QFMFSF  360 (433)
Q Consensus       355 rLlyiL  360 (433)
                      +++..+
T Consensus       349 ~~~~~~  354 (370)
T 1ihg_A          349 KVKQKI  354 (370)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=96.72  E-value=0.012  Score=54.59  Aligned_cols=55  Identities=25%  Similarity=0.316  Sum_probs=34.2

Q ss_pred             CchhhhhhHHHHHHhhccccc-----------chhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013954          291 GKLKEALPFYEKVMNKMVFKS-----------ELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  345 (433)
Q Consensus       291 GkYreAV~~lEkA~~~v~~~S-----------~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  345 (433)
                      |+|.+|+.+|++|+.+.+...           .+-..+.+.++.||-..|+.++|+..|++.. .+|
T Consensus       161 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  227 (336)
T 1p5q_A          161 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS  227 (336)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            566666666666666666552           3334555666777777777777777776664 344

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=96.70  E-value=0.0079  Score=49.40  Aligned_cols=84  Identities=13%  Similarity=0.069  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC
Q 013954          251 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  330 (433)
Q Consensus       251 e~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  330 (433)
                      ..+..+.+..|++-.    ++    .....+..|..++..|+|.+|+.+|++|+..-+..    ..+.+.++.||-..|+
T Consensus        19 ~~~~~~A~~~~~~a~----~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~   86 (213)
T 1hh8_A           19 KKDWKGALDAFSAVQ----DP----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYFQRGMLYYQTEK   86 (213)
T ss_dssp             TTCHHHHHHHHHTSS----SC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred             hCCHHHHHHHHHHHc----CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHccc
Confidence            345566777777542    33    23467888999999999999999999999886543    4677889999999999


Q ss_pred             hHHHHHHHHHHh-cCCC
Q 013954          331 PKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       331 ~~EAiaLYkkL~-sHP~  346 (433)
                      .++|+..|++.. .+|.
T Consensus        87 ~~~A~~~~~~al~~~~~  103 (213)
T 1hh8_A           87 YDLAIKDLKEALIQLRG  103 (213)
T ss_dssp             HHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            999999999985 3443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.70  E-value=0.0035  Score=52.92  Aligned_cols=63  Identities=17%  Similarity=0.169  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP  345 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP  345 (433)
                      ..+..|..++..|+|.+|+.+|+++++.-+...    .+.+.++.||-..|+.++|+..|+++...|
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   67 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP----YIYNRRAVCYYELAKYDLAQKDIETYFSKV   67 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS----TTHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence            467889999999999999999999998876543    467788999999999999999999997644

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.69  E-value=0.0029  Score=58.94  Aligned_cols=72  Identities=26%  Similarity=0.276  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccc--hhH-----------HHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE--LHG-----------LAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~--LGG-----------eaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      ..++..+..|..++..|+|.+|+.+|++|+...+....  .-|           .+.+.++.||-..|+.++|+..|++.
T Consensus       177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45666788999999999999999999999988765431  112           27788999999999999999999987


Q ss_pred             h-cCCC
Q 013954          342 Q-SHPN  346 (433)
Q Consensus       342 ~-sHP~  346 (433)
                      . .+|+
T Consensus       257 l~~~p~  262 (338)
T 2if4_A          257 LTEEEK  262 (338)
T ss_dssp             HHHCTT
T ss_pred             HHhCCC
Confidence            4 5664

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=96.67  E-value=0.0084  Score=46.57  Aligned_cols=62  Identities=21%  Similarity=0.154  Sum_probs=42.0

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  345 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  345 (433)
                      .+..|..++..|++.+|+.+|++++...+..    ..+.+.++.+|...|+.++|+.+|+++. .+|
T Consensus        79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  141 (186)
T 3as5_A           79 ATVLGLTYVQVQKYDLAVPLLIKVAEANPIN----FNVRFRLGVALDNLGRFDEAIDSFKIALGLRP  141 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence            4556777777777777777777777665432    3556667777777777777777777764 344

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=96.64  E-value=0.01  Score=47.89  Aligned_cols=63  Identities=10%  Similarity=-0.018  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc-CChHHHHHHHHHHhc
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-HRPKEARIMYEKLQS  343 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-GR~~EAiaLYkkL~s  343 (433)
                      ....+..|..++..|++.+|+.+|+++++..+..    ..+...++.+|-.. |+.++|+.+|+++..
T Consensus        42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~  105 (225)
T 2vq2_A           42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS----AEINNNYGWFLCGRLNRPAESMAYFDKALA  105 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence            3445556777888888888888888887765443    44667778888888 888888888888765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.61  E-value=0.0091  Score=53.44  Aligned_cols=77  Identities=19%  Similarity=0.130  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh-H--HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHH
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-G--LAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKR  352 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG-G--eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQ  352 (433)
                      ....+..|..++..|+|.+|+.+|++|++..+...... +  .+.+.++.||...|+.++|+..|++.. -+|.-.-...
T Consensus       158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  237 (292)
T 1qqe_A          158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE  237 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence            44466779999999999999999999999877665432 2  356778999999999999999999986 4665443333


Q ss_pred             H
Q 013954          353 A  353 (433)
Q Consensus       353 A  353 (433)
                      +
T Consensus       238 ~  238 (292)
T 1qqe_A          238 S  238 (292)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=96.60  E-value=0.013  Score=42.69  Aligned_cols=63  Identities=19%  Similarity=0.172  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      .+..|..++..|++.+|+.+|++++..-+..    ..+.+.++.+|-..|+.++|+.+|+++. .+|.
T Consensus        38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  101 (136)
T 2fo7_A           38 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  101 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            4556888888888888888888888765432    3456677888888888888888888874 4553

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=96.59  E-value=0.01  Score=47.96  Aligned_cols=58  Identities=12%  Similarity=0.071  Sum_probs=34.9

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      .+..|..++..|++.+|+.+|+++++..+..    ..+...++.+|...|+.++|+..|++.
T Consensus       116 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~  173 (225)
T 2vq2_A          116 NLNKGICSAKQGQFGLAEAYLKRSLAAQPQF----PPAFKELARTKMLAGQLGDADYYFKKY  173 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4555666666666666666666666554332    345555666666666666666666665

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=96.58  E-value=0.018  Score=44.65  Aligned_cols=87  Identities=14%  Similarity=0.113  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC
Q 013954          251 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  330 (433)
Q Consensus       251 e~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  330 (433)
                      ..+..+.+..|++-.  ..+|..   ....+..|..++..|++.+|+.+|+++++..+..    ..+.+.++.+|...|+
T Consensus        21 ~~~~~~A~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~   91 (186)
T 3as5_A           21 AGRYSQAVMLLEQVY--DADAFD---VDVALHLGIAYVKTGAVDRGTELLERSLADAPDN----VKVATVLGLTYVQVQK   91 (186)
T ss_dssp             HTCHHHHHHHHTTTC--CTTSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTC
T ss_pred             hcCHHHHHHHHHHHH--HhCccC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcC
Confidence            344556666676443  444543   3446778999999999999999999999885443    4677888999999999


Q ss_pred             hHHHHHHHHHHh-cCCC
Q 013954          331 PKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       331 ~~EAiaLYkkL~-sHP~  346 (433)
                      .++|+.+|+++. .+|.
T Consensus        92 ~~~A~~~~~~~~~~~~~  108 (186)
T 3as5_A           92 YDLAVPLLIKVAEANPI  108 (186)
T ss_dssp             HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhcCcH
Confidence            999999999985 4664

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.57  E-value=0.03  Score=46.77  Aligned_cols=86  Identities=13%  Similarity=0.028  Sum_probs=62.9

Q ss_pred             HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHH
Q 013954          254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE  333 (433)
Q Consensus       254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E  333 (433)
                      ..+.+..|++-.....+|.   .....+..|..++..|++.+|+.+|+++++.-+..    ..+.+.++.+|...|+.++
T Consensus       121 ~~~A~~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          121 YEEAYQRLLEASQDTLYPE---RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ----PSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHHHHHHHHHTTCTTCTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhCccCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHH
Confidence            3444455554433112332   33456778999999999999999999999876543    5677889999999999999


Q ss_pred             HHHHHHHHh-cCCC
Q 013954          334 ARIMYEKLQ-SHPN  346 (433)
Q Consensus       334 AiaLYkkL~-sHP~  346 (433)
                      |+..|+++. .+|.
T Consensus       194 A~~~~~~~~~~~~~  207 (252)
T 2ho1_A          194 ARQYYDLFAQGGGQ  207 (252)
T ss_dssp             HHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHhCcC
Confidence            999999985 4553

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.56  E-value=0.018  Score=48.94  Aligned_cols=69  Identities=13%  Similarity=0.148  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccc----cchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK----SELHGLAALQWSICQDSLHRPKEARIMYEKLQS  343 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~----S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  343 (433)
                      ..+...+..|..++..|+|.+|+.+|+++++.....    ...-..+...++.||...|+.++|+.+|++...
T Consensus       151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455667788999999999999999999999875332    445567888899999999999999999999853

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.54  E-value=0.013  Score=49.05  Aligned_cols=60  Identities=12%  Similarity=-0.115  Sum_probs=41.0

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS  343 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  343 (433)
                      .+..|..++..|++.+|+.+|+++++.-+..    ..+.+.++.+|...|+.++|+.+|+++..
T Consensus        74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~  133 (252)
T 2ho1_A           74 HAALAVVFQTEMEPKLADEEYRKALASDSRN----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ  133 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            3445677777777777777777777665432    45666677777777777777777777754

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=96.46  E-value=0.012  Score=52.36  Aligned_cols=58  Identities=17%  Similarity=0.150  Sum_probs=28.1

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      .+..|..++..|+|.+|+.+|+++++.-+..    ..+...++.||...|+.++|+..|++.
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a  125 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGD----AEAWQFLGITQAENENEQAAIVALQRC  125 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4444555555555555555555554443322    334444455555555555555555544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.43  E-value=0.017  Score=47.08  Aligned_cols=86  Identities=9%  Similarity=-0.047  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChH
Q 013954          253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK  332 (433)
Q Consensus       253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~  332 (433)
                      +..+.+..|++-.  .++|..-   +.-+..|..++..|++.+|+.+|++|+++-|..    -++.+.++.+|...|+.+
T Consensus        46 ~~~~A~~~~~~al--~~~p~~~---~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~  116 (150)
T 4ga2_A           46 EYDLAKKYICTYI--NVQERDP---KAHRFLGLLYELEENTDKAVECYRRSVELNPTQ----KDLVLKIAELLCKNDVTD  116 (150)
T ss_dssp             CHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHCSSS
T ss_pred             CHHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChH
Confidence            3444555555443  4555542   346678999999999999999999999987654    457788999999999998


Q ss_pred             HHHHHH-HH-HhcCCCH
Q 013954          333 EARIMY-EK-LQSHPNA  347 (433)
Q Consensus       333 EAiaLY-kk-L~sHP~~  347 (433)
                      +|+..| ++ |+-+|+-
T Consensus       117 ~aa~~~~~~al~l~P~~  133 (150)
T 4ga2_A          117 GRAKYWVERAAKLFPGS  133 (150)
T ss_dssp             SHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHhCcCC
Confidence            877654 65 4567753

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=96.41  E-value=0.023  Score=47.65  Aligned_cols=66  Identities=20%  Similarity=0.066  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  348 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  348 (433)
                      ..+..|..++..|+|.+|+.+|++|++.-+..    ..+.+.++.||-..|+.++|+..|++.. .+|+..
T Consensus        79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A           79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            35667999999999999999999999987654    4678889999999999999999999985 566654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.39  E-value=0.013  Score=47.25  Aligned_cols=68  Identities=15%  Similarity=0.005  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc---chhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS---ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S---~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      ..+...+..|..++..|+|.+|+.+|+++++......   ..-+.+...++.+|-..|+.++|+..|++..
T Consensus        64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A           64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3455566778889999999999999999888754322   2446677788889999999999998888764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=96.38  E-value=0.015  Score=42.36  Aligned_cols=63  Identities=19%  Similarity=0.172  Sum_probs=52.7

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      .+..|..++..|++.+|+.+|+++++.-+..    ..+...++.+|-..|+.++|+.+|+++. .+|.
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   67 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR   67 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            4667899999999999999999998875432    4566778999999999999999999985 4554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.36  E-value=0.00076  Score=49.61  Aligned_cols=85  Identities=9%  Similarity=0.158  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc--chhHHHHHHHHHHHHhcCC
Q 013954          253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHR  330 (433)
Q Consensus       253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR  330 (433)
                      +..+.+..|++-.  .++|..   ....+..|..++..|+|.+|+..|++|++.-+...  ..-+.+.+.++.||.++|+
T Consensus        19 ~~~~A~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~   93 (111)
T 2l6j_A           19 LYREAVHCYDQLI--TAQPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGS   93 (111)
T ss_dssp             CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHH--hcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence            4455666666544  345543   33467889999999999999999999999876652  2237788899999999999


Q ss_pred             hHHHHHHHHHHh
Q 013954          331 PKEARIMYEKLQ  342 (433)
Q Consensus       331 ~~EAiaLYkkL~  342 (433)
                      .++|+..++++.
T Consensus        94 ~~~a~~~~~~~~  105 (111)
T 2l6j_A           94 VQIPVVEVDELP  105 (111)
T ss_dssp             CCCCSSSSSSCS
T ss_pred             HhhhHhHHHHhH
Confidence            999988877663

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.36  E-value=0.029  Score=45.29  Aligned_cols=64  Identities=6%  Similarity=-0.076  Sum_probs=46.7

Q ss_pred             HHHHHHH-HHhCCch--hhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          280 ALKDGDS-LMDSGKL--KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       280 a~~~Gk~-amerGkY--reAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      .+..|.. ++..|+|  .+|+.+|++++..-+..    ..+.+.++.+|...|+.++|+..|+++. .+|..
T Consensus        81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A           81 YAALATVLYYQASQHMTAQTRAMIDKALALDSNE----ITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            4556777 6678887  88888888888776543    3566677888888888888888888864 56654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.34  E-value=0.015  Score=46.97  Aligned_cols=66  Identities=12%  Similarity=0.039  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHH-HHhcCCh--HHHHHHHHHHh-cCCCH
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSIC-QDSLHRP--KEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiA-ydA~GR~--~EAiaLYkkL~-sHP~~  347 (433)
                      ...+..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.| |...|+.  ++|+.+|+++. .+|+-
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~  114 (177)
T 2e2e_A           45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN----AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE  114 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence            346788999999999999999999999987654    4677889999 8899998  99999999985 57763

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.34  E-value=0.013  Score=48.20  Aligned_cols=67  Identities=19%  Similarity=0.180  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV  349 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV  349 (433)
                      ..+..|..++..|+|.+|+.+|++++...+..    ..+.+.++.||...|+.++|+..|+++. .+|+-..
T Consensus       161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~  228 (243)
T 2q7f_A          161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGH----ADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML  228 (243)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence            35666777888888888888888887765432    4466777888888888888888888774 5665443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.34  E-value=0.012  Score=47.35  Aligned_cols=68  Identities=15%  Similarity=0.039  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh--HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      ..+...+..|..++..|+|.+|+.+|+++++.........  ..+...++.+|...|+.++|+..|++..
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            4555677889999999999999999999998765444333  4455889999999999999999998763

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=96.34  E-value=0.0098  Score=62.80  Aligned_cols=86  Identities=16%  Similarity=0.247  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954          252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  331 (433)
Q Consensus       252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  331 (433)
                      .+..+.+..|++-.  .++|..   .+..+..|..+++.|+|.+|+++|++|+++-+..    .++...|+.+|...|+.
T Consensus        57 g~~~eA~~~~~~Al--~l~P~~---~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~----~~a~~~Lg~~~~~~g~~  127 (723)
T 4gyw_A           57 GKLQEALMHYKEAI--RISPTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF----ADAHSNLASIHKDSGNI  127 (723)
T ss_dssp             TCHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHH--HhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCH
Confidence            34455566665543  344443   2335666888888888888888888887765433    45677788888888888


Q ss_pred             HHHHHHHHHH-hcCCC
Q 013954          332 KEARIMYEKL-QSHPN  346 (433)
Q Consensus       332 ~EAiaLYkkL-~sHP~  346 (433)
                      ++|+..|++. +-+|+
T Consensus       128 ~eAi~~~~~Al~l~P~  143 (723)
T 4gyw_A          128 PEAIASYRTALKLKPD  143 (723)
T ss_dssp             HHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            8888888876 35665

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=96.34  E-value=0.04  Score=53.69  Aligned_cols=88  Identities=14%  Similarity=0.073  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954          250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  329 (433)
Q Consensus       250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  329 (433)
                      +..+..+.+..|++-.  .++|..   .+..+..|..++..|+|.+|+.+|++|++.-+..    ..+...++.||...|
T Consensus        35 ~~g~~~~A~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g  105 (568)
T 2vsy_A           35 GMGDTTAGEMAVQRGL--ALHPGH---PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH----PGIALWLGHALEDAG  105 (568)
T ss_dssp             HHTCHHHHHHHHHHHH--TTSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHH--HhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcC
Confidence            3445667777777655  445543   3446778999999999999999999999986554    567788999999999


Q ss_pred             ChHHHHHHHHHHh-cCCC
Q 013954          330 RPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       330 R~~EAiaLYkkL~-sHP~  346 (433)
                      +.++|+..|++.. .+|+
T Consensus       106 ~~~~A~~~~~~al~~~p~  123 (568)
T 2vsy_A          106 QAEAAAAAYTRAHQLLPE  123 (568)
T ss_dssp             CHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHhCCC
Confidence            9999999999974 5665

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.34  E-value=0.013  Score=52.15  Aligned_cols=101  Identities=12%  Similarity=0.094  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCch----------hhhhhHHHHHHhhcccccchhHH
Q 013954          247 RAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKL----------KEALPFYEKVMNKMVFKSELHGL  316 (433)
Q Consensus       247 kaaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkY----------reAV~~lEkA~~~v~~~S~LGGe  316 (433)
                      ..+|..+..+.+..|++-+  .++|..-   +.-+..|..+++.|++          .+|+..|++|+++-|...    .
T Consensus        11 ~~~r~~~feeA~~~~~~Ai--~l~P~~a---ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~----~   81 (158)
T 1zu2_A           11 EFDRILLFEQIRQDAENTY--KSNPLDA---DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD----E   81 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH----H
T ss_pred             HHHHHhHHHHHHHHHHHHH--HHCCCCH---HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH----H
Confidence            4567777778888887665  4555533   3355678888888775          499999999999987644    5


Q ss_pred             HHHHHHHHHHhcC-----------ChHHHHHHHHHHh-cCCCHHHHHHHHHH
Q 013954          317 AALQWSICQDSLH-----------RPKEARIMYEKLQ-SHPNALVSKRARQF  356 (433)
Q Consensus       317 aqLwLAiAydA~G-----------R~~EAiaLYkkL~-sHP~~eVrKQAkrL  356 (433)
                      +...|.+||.+.|           +.++|+..|++-. -.|+-..-++|.++
T Consensus        82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~  133 (158)
T 1zu2_A           82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            6678899998875           8999999999975 68877766666543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=96.30  E-value=0.039  Score=48.49  Aligned_cols=90  Identities=13%  Similarity=0.109  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954          250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  329 (433)
Q Consensus       250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  329 (433)
                      +..+..+.+..|++-.  .++|... .+...+..|..++..|+|.+|+.+|++++..-+..    ..+...++.||...|
T Consensus       193 ~~~~~~~A~~~~~~a~--~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~g  265 (368)
T 1fch_A          193 SDSLFLEVKELFLAAV--RLDPTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND----YLLWNKLGATLANGN  265 (368)
T ss_dssp             HHHHHHHHHHHHHHHH--HHSTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred             hcccHHHHHHHHHHHH--HhCcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHcC
Confidence            4455556666665543  3334311 23446778999999999999999999999886543    567888999999999


Q ss_pred             ChHHHHHHHHHHh-cCCC
Q 013954          330 RPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       330 R~~EAiaLYkkL~-sHP~  346 (433)
                      +.++|+..|++.. .+|+
T Consensus       266 ~~~~A~~~~~~al~~~~~  283 (368)
T 1fch_A          266 QSEEAVAAYRRALELQPG  283 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHhCCC
Confidence            9999999999974 5665

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=96.29  E-value=0.017  Score=51.46  Aligned_cols=90  Identities=11%  Similarity=0.048  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh
Q 013954          248 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  327 (433)
Q Consensus       248 aaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  327 (433)
                      ..+..+..+.+..|++-.  .++|..   ....+..|..++..|+|.+|+.+|++|++.-+..    ..+...++.||..
T Consensus        75 ~~~~g~~~~A~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~  145 (365)
T 4eqf_A           75 RLKEGDLPVTILFMEAAI--LQDPGD---AEAWQFLGITQAENENEQAAIVALQRCLELQPNN----LKALMALAVSYTN  145 (365)
T ss_dssp             HHHHTCHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHH--HhCcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHc
Confidence            344555666777776554  344543   3446788999999999999999999999986543    5678889999999


Q ss_pred             cCChHHHHHHHHHHh-cCCC
Q 013954          328 LHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       328 ~GR~~EAiaLYkkL~-sHP~  346 (433)
                      .|+.++|+.+|++.. .+|.
T Consensus       146 ~g~~~~A~~~~~~al~~~p~  165 (365)
T 4eqf_A          146 TSHQQDACEALKNWIKQNPK  165 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHCHH
T ss_pred             cccHHHHHHHHHHHHHhCcc
Confidence            999999999999985 4554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=96.26  E-value=0.011  Score=62.29  Aligned_cols=88  Identities=18%  Similarity=0.203  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC
Q 013954          251 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  330 (433)
Q Consensus       251 e~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  330 (433)
                      ..+..+.++.|++-.  .++|..-   +..+..|..++..|+|.+|+.+|++|+++-+..    .++...|+.||...|+
T Consensus        22 ~G~~~eAi~~~~kAl--~l~P~~~---~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~----~~a~~nLg~~l~~~g~   92 (723)
T 4gyw_A           22 QGNIEEAVRLYRKAL--EVFPEFA---AAHSNLASVLQQQGKLQEALMHYKEAIRISPTF----ADAYSNMGNTLKEMQD   92 (723)
T ss_dssp             TTCHHHHHHHHHHHH--HHCSCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCC
Confidence            345677788887654  5566643   346778999999999999999999999886543    5678899999999999


Q ss_pred             hHHHHHHHHHHh-cCCCH
Q 013954          331 PKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       331 ~~EAiaLYkkL~-sHP~~  347 (433)
                      .++|+..|++.. -+|+-
T Consensus        93 ~~~A~~~~~kAl~l~P~~  110 (723)
T 4gyw_A           93 VQGALQCYTRAIQINPAF  110 (723)
T ss_dssp             HHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            999999999974 57753

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=96.23  E-value=0.032  Score=50.69  Aligned_cols=87  Identities=23%  Similarity=0.210  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChH
Q 013954          253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK  332 (433)
Q Consensus       253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~  332 (433)
                      +..+.+..|++-.  ..+|..   ....+..|..++..|+|.+|+.+|+++++.-+..    ..+...++.||...|+.+
T Consensus        41 ~~~~A~~~~~~~l--~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~  111 (450)
T 2y4t_A           41 QLADALSQFHAAV--DGDPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF----TAARLQRGHLLLKQGKLD  111 (450)
T ss_dssp             CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHH--HhCCcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHH
Confidence            4445555554433  222221   4455666888888888888888888888775443    466777888888888888


Q ss_pred             HHHHHHHHHh-cCCCHH
Q 013954          333 EARIMYEKLQ-SHPNAL  348 (433)
Q Consensus       333 EAiaLYkkL~-sHP~~e  348 (433)
                      +|+..|+++. ..|+..
T Consensus       112 ~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A          112 EAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             HHHHHHHHHHTSCCCHH
T ss_pred             HHHHHHHHHHhcCCCCh
Confidence            8888888875 566544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.21  E-value=0.022  Score=55.42  Aligned_cols=56  Identities=20%  Similarity=0.195  Sum_probs=44.1

Q ss_pred             CchhhhhhHHHHHHhhccccc-----------chhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          291 GKLKEALPFYEKVMNKMVFKS-----------ELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       291 GkYreAV~~lEkA~~~v~~~S-----------~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      |+|.+|+.+|++|+++.+...           .+--.+.++++.||-.+|+.++|+..|++.. .+|+
T Consensus       282 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  349 (457)
T 1kt0_A          282 GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA  349 (457)
T ss_dssp             TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence            778888888888888877763           3445677888999999999999999998874 4554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.19  E-value=0.037  Score=49.10  Aligned_cols=91  Identities=7%  Similarity=0.016  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhhcCCCC-CcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHH--HHHHHHHHHHhc
Q 013954          252 ERTRQLLAAYKKSVGLNV-DPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGL--AALQWSICQDSL  328 (433)
Q Consensus       252 ~rtke~LaaYrk~~Gl~V-dp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGe--aqLwLAiAydA~  328 (433)
                      .+..+.+.-|.+-.-..- ++..+....-.+..|...+..|+|.+|+.+|++|++........-++  +...++.||...
T Consensus        89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  168 (293)
T 3u3w_A           89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAEN  168 (293)
T ss_dssp             TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc
Confidence            334455555554433222 22222222223347889999999999999999999965444444344  557799999999


Q ss_pred             CChHHHHHHHHHHh
Q 013954          329 HRPKEARIMYEKLQ  342 (433)
Q Consensus       329 GR~~EAiaLYkkL~  342 (433)
                      |+.++|+..|++..
T Consensus       169 g~~~~A~~~~~~al  182 (293)
T 3u3w_A          169 GYLKKGIDLFEQIL  182 (293)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999999975

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.16  E-value=0.013  Score=48.18  Aligned_cols=59  Identities=14%  Similarity=0.093  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK  340 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk  340 (433)
                      .+..|..++..|+|.+|+..|++++..-|...  ...+...|+.+|...|+.++|+..|++
T Consensus       111 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~a~~~l~~~~~~~g~~~~A~~~y~~  169 (176)
T 2r5s_A          111 ACELAVQYNQVGRDEEALELLWNILKVNLGAQ--DGEVKKTFMDILSALGQGNAIASKYRR  169 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT--TTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCcccC--hHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            34445555555555555555555554433211  123444455555555555555555554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.16  E-value=0.024  Score=46.66  Aligned_cols=64  Identities=19%  Similarity=0.139  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      ..+..|..++..|++.+|+.+|+++++..+..    ..+.+.++.+|...|+.++|+.+|++.. .+|.
T Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  157 (243)
T 2q7f_A           93 AYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN----GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN  157 (243)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            34566778888888888888888888766443    4567778888888888888888888864 4553

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=96.15  E-value=0.048  Score=53.00  Aligned_cols=103  Identities=13%  Similarity=0.014  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhC--------CchhhhhhHHHHHHhhcccccchhHHHHHHH
Q 013954          250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDS--------GKLKEALPFYEKVMNKMVFKSELHGLAALQW  321 (433)
Q Consensus       250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amer--------GkYreAV~~lEkA~~~v~~~S~LGGeaqLwL  321 (433)
                      +..+..+.+..|++-+  .++|..-   ...+..|..++..        |+|.+|+.+|++|+.+-+. ..-...+.+.+
T Consensus       191 ~~g~~~~A~~~~~~al--~~~p~~~---~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~l  264 (474)
T 4abn_A          191 HSRHVMDSVRQAKLAV--QMDVLDG---RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-ASSNPDLHLNR  264 (474)
T ss_dssp             HHHHHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-GGGCHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-cccCHHHHHHH
Confidence            4456667777777655  4455532   3456778888888        9999999999999998542 22456788899


Q ss_pred             HHHHHhcCChHHHHHHHHHHh-cCCCH-HHHHHHHHHhh
Q 013954          322 SICQDSLHRPKEARIMYEKLQ-SHPNA-LVSKRARQFMF  358 (433)
Q Consensus       322 AiAydA~GR~~EAiaLYkkL~-sHP~~-eVrKQAkrLly  358 (433)
                      +.||...|+.++|+..|++.. .+|+- .......+++.
T Consensus       265 g~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~  303 (474)
T 4abn_A          265 ATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLE  303 (474)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999999999984 56653 33333333333

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=96.14  E-value=0.016  Score=49.59  Aligned_cols=89  Identities=12%  Similarity=-0.003  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954          249 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  328 (433)
Q Consensus       249 aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  328 (433)
                      .+..+..+.+..|++-..  .+|   ......+..|..++..|+|.+|+.+|+++++.-+..    ..+...++.||...
T Consensus        32 ~~~~~~~~A~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~  102 (327)
T 3cv0_A           32 LKLANLAEAALAFEAVCQ--AAP---EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNE  102 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHH--HCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHT
T ss_pred             HHhccHHHHHHHHHHHHH--hCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHHHHHc
Confidence            344455666666654432  222   134455566888888888888888888887765432    45677788888888


Q ss_pred             CChHHHHHHHHHHh-cCCC
Q 013954          329 HRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       329 GR~~EAiaLYkkL~-sHP~  346 (433)
                      |+.++|+..|+++. .+|.
T Consensus       103 ~~~~~A~~~~~~~~~~~~~  121 (327)
T 3cv0_A          103 HNANAALASLRAWLLSQPQ  121 (327)
T ss_dssp             TCHHHHHHHHHHHHHTSTT
T ss_pred             CCHHHHHHHHHHHHHhCCc
Confidence            88888888888874 4444

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.13  E-value=0.016  Score=52.73  Aligned_cols=77  Identities=13%  Similarity=0.209  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc---ccc----chhH--------------HHHHHHHHHHHhcCChH
Q 013954          274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV---FKS----ELHG--------------LAALQWSICQDSLHRPK  332 (433)
Q Consensus       274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~---~~S----~LGG--------------eaqLwLAiAydA~GR~~  332 (433)
                      ..+++..+--|+.+|..|.|++|..+|.+|++...   .++    .+|.              |+..+.|.||-.+++.+
T Consensus        60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~  139 (167)
T 3ffl_A           60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK  139 (167)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence            34555677789999999999999999999965443   222    1221              68899999999999999


Q ss_pred             HHHHHHHHHh-cCCCHHHH
Q 013954          333 EARIMYEKLQ-SHPNALVS  350 (433)
Q Consensus       333 EAiaLYkkL~-sHP~~eVr  350 (433)
                      +||++-+.+- +.-.+.|-
T Consensus       140 ~Ai~~Le~Ip~k~Rt~kvn  158 (167)
T 3ffl_A          140 DAIAILDGIPSRQRTPKIN  158 (167)
T ss_dssp             HHHHHHHTSCGGGCCHHHH
T ss_pred             HHHHHHhcCCchhcCHHHH
Confidence            9999988873 45555543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.11  E-value=0.017  Score=52.58  Aligned_cols=58  Identities=14%  Similarity=0.117  Sum_probs=47.5

Q ss_pred             HHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCC
Q 013954          285 DSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPN  346 (433)
Q Consensus       285 k~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~  346 (433)
                      ..+++.|+|.+|+..|+++++..+..    ..+...+++||...||.++|+..|++. ..+|+
T Consensus       174 ~l~~~~~~~~eA~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~  232 (291)
T 3mkr_A          174 SLAAGGEKLQDAYYIFQEMADKCSPT----LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG  232 (291)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHhCchHHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            44557799999999999999986543    456667899999999999999999995 56774

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.08  E-value=0.0078  Score=46.34  Aligned_cols=58  Identities=19%  Similarity=0.206  Sum_probs=43.7

Q ss_pred             hCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          289 DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       289 erGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      ..|+|.+|+.+|++|++.- ....-...+.+.|+.||-..|+.++|+..|++.. .+|+-
T Consensus         2 ~~g~~~~A~~~~~~al~~~-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   60 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG-LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH   60 (117)
T ss_dssp             -----CCCHHHHHHHHSSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCcHHHHHHHHHHHHHcC-CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            3689999999999999863 1123346788999999999999999999999985 57764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.07  E-value=0.028  Score=49.82  Aligned_cols=68  Identities=12%  Similarity=0.096  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc---ccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF---KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~---~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .++.-....|..++..|+|.+|+.+|++|++....   ....-..+-..++.||-..|+.++|+..|++..
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al  223 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            44555677899999999999999999999975542   333445577889999999999999999998763

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.04  E-value=0.02  Score=51.16  Aligned_cols=68  Identities=10%  Similarity=0.072  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhH--HHHHHHHHHHHhc-CChHHHHHHHHHHh
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG--LAALQWSICQDSL-HRPKEARIMYEKLQ  342 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGG--eaqLwLAiAydA~-GR~~EAiaLYkkL~  342 (433)
                      ..+......|..+...|+|.+|+.+|++|++..+......+  .+...++.+|... |+.++|+..|++..
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al  145 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG  145 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            34556667899999999999999999999998765444443  4556689999995 99999999999874

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=96.04  E-value=0.037  Score=47.38  Aligned_cols=87  Identities=11%  Similarity=0.060  Sum_probs=60.0

Q ss_pred             HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc-----chhHHHHHHHHHHHHhcC
Q 013954          255 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS-----ELHGLAALQWSICQDSLH  329 (433)
Q Consensus       255 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S-----~LGGeaqLwLAiAydA~G  329 (433)
                      .+.+..|++-.  .++|..   ....+..|..++..|+|.+|+.+|+++++..+...     .-...+...++.||...|
T Consensus       176 ~~A~~~~~~al--~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  250 (330)
T 3hym_B          176 KLAERFFSQAL--SIAPED---PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK  250 (330)
T ss_dssp             HHHHHHHHHHH--TTCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHH--HhCCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence            34444454433  333433   23456778889999999999999999988764322     122457778899999999


Q ss_pred             ChHHHHHHHHHHh-cCCC
Q 013954          330 RPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       330 R~~EAiaLYkkL~-sHP~  346 (433)
                      +.++|+..|++.. .+|+
T Consensus       251 ~~~~A~~~~~~a~~~~~~  268 (330)
T 3hym_B          251 KYAEALDYHRQALVLIPQ  268 (330)
T ss_dssp             CHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhhCcc
Confidence            9999999999875 4554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.04  E-value=0.028  Score=55.53  Aligned_cols=68  Identities=15%  Similarity=0.016  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh----cccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      -..+...-..|..++..|+|.+|+++++++++.    ++.....=|..-..|+..|...|+.+||+.+|++-
T Consensus       326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            355555666789999999999999999998754    55666666888889999999999999999999875

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.02  E-value=0.017  Score=56.82  Aligned_cols=85  Identities=11%  Similarity=0.029  Sum_probs=64.8

Q ss_pred             HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHH
Q 013954          254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE  333 (433)
Q Consensus       254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E  333 (433)
                      ..+.+..|++-.  .++|..   ....+..|..++..|+|.+|+.+|++|++.-+..    ..+...++.||...|+.++
T Consensus        22 ~~~A~~~~~~Al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           22 YENAIKFYSQAI--ELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             HHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHH--HhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHH
Confidence            334444554333  234443   4456788999999999999999999999885533    5677889999999999999


Q ss_pred             HHHHHHHHh-cCCCH
Q 013954          334 ARIMYEKLQ-SHPNA  347 (433)
Q Consensus       334 AiaLYkkL~-sHP~~  347 (433)
                      |+..|++.. .+|+-
T Consensus        93 A~~~~~~al~~~p~~  107 (477)
T 1wao_1           93 ALRDYETVVKVKPHD  107 (477)
T ss_dssp             HHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999999974 57754

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=96.01  E-value=0.019  Score=50.55  Aligned_cols=89  Identities=12%  Similarity=0.100  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954          249 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  328 (433)
Q Consensus       249 aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  328 (433)
                      .+..+..+.+..|++-.  .++|.   .....+..|..++..|+|.+|+.+|+++++.-+.    ...+...++.||...
T Consensus        75 ~~~g~~~~A~~~~~~al--~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~  145 (368)
T 1fch_A           75 LQEGDLPNAVLLFEAAV--QQDPK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPD----NQTALMALAVSFTNE  145 (368)
T ss_dssp             HHTTCHHHHHHHHHHHH--HSCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHH--HhCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHc
Confidence            33444555556665444  22232   2344555667777777777777777777665433    234566667777777


Q ss_pred             CChHHHHHHHHHHh-cCCC
Q 013954          329 HRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       329 GR~~EAiaLYkkL~-sHP~  346 (433)
                      |+.++|+.+|+++. .+|.
T Consensus       146 g~~~~A~~~~~~~~~~~~~  164 (368)
T 1fch_A          146 SLQRQACEILRDWLRYTPA  164 (368)
T ss_dssp             TCHHHHHHHHHHHHHTSTT
T ss_pred             CCHHHHHHHHHHHHHhCcC
Confidence            77777777777664 3444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=95.99  E-value=0.015  Score=52.28  Aligned_cols=90  Identities=12%  Similarity=-0.010  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954          249 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  328 (433)
Q Consensus       249 aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  328 (433)
                      .+..+..+.++.|++-.  ..+|..   ....+..+..++.+|++.+|+..|+++++.-|..    -++.+.|+.+|...
T Consensus       162 ~~~g~~~~A~~~l~~~~--~~~p~~---~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~----~~~~~~la~~l~~~  232 (287)
T 3qou_A          162 IALNRSEDAEAVLXTIP--LQDQDT---RYQGLVAQIELLXQAADTPEIQQLQQQVAENPED----AALATQLALQLHQV  232 (287)
T ss_dssp             HHTTCHHHHHHHHTTSC--GGGCSH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHhCc--hhhcch---HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc----HHHHHHHHHHHHHc
Confidence            45556677777776443  445532   2346667777888888888999999988887654    45778889999999


Q ss_pred             CChHHHHHHHHHHh-cCCCH
Q 013954          329 HRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       329 GR~~EAiaLYkkL~-sHP~~  347 (433)
                      ||.++|+..|+++. .+|+.
T Consensus       233 g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          233 GRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             TCHHHHHHHHHHHHHHCTTG
T ss_pred             ccHHHHHHHHHHHHhccccc
Confidence            99999999998885 57764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=95.96  E-value=0.018  Score=51.86  Aligned_cols=67  Identities=13%  Similarity=0.240  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      ++..+..|..++..|+|.+|+.+|++|+..-+..    ..+...++.||...|+.++|+..|++.. .+|+-
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~   71 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS   71 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            3557889999999999999999999999987654    4677889999999999999999999975 57753

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=95.88  E-value=0.083  Score=47.49  Aligned_cols=68  Identities=10%  Similarity=0.016  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh--HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      ..+...+..|..++..|+|.+|+.+|+++++..+......  ..+...++.+|-..|+.++|+..|++..
T Consensus       221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  290 (411)
T 4a1s_A          221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL  290 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            4555677889999999999999999999998876533322  3477789999999999999999998874

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=95.87  E-value=0.02  Score=48.36  Aligned_cols=67  Identities=13%  Similarity=0.069  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc--ccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      ..+...+..|..++..|++.+|+.+|+++++..+.  ....-..+...++.+|...|+.++|+..|++.
T Consensus       221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  289 (338)
T 3ro2_A          221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  289 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            44555666677777777777777777777655432  35566666667777777777777777777665

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=95.85  E-value=0.039  Score=47.15  Aligned_cols=66  Identities=20%  Similarity=0.176  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      .+..+..|..++..|+|.+|+.+|+++++.-+.    ...+.+.++.||...|+.++|+..|++.. .+|.
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~   87 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   87 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Confidence            345788999999999999999999999987654    45677889999999999999999999985 5664

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.83  E-value=0.05  Score=54.22  Aligned_cols=67  Identities=10%  Similarity=-0.047  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh----cccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      ..+...-..|..+...|+|.+|+++|++|++.    ++....-=|..-..|+..|...|+.+||+.||++-
T Consensus       338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            34444455688999999999999999999765    34444444777788999999999999999999874

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=95.82  E-value=0.019  Score=49.10  Aligned_cols=64  Identities=9%  Similarity=-0.022  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      ..+..|..++..|+|.+|+.+|+++++.-+.    ...+...++.||...|+.++|+..|++.. .+|+
T Consensus       238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (330)
T 3hym_B          238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQ----NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD  302 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc----chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence            4567799999999999999999999988654    45678889999999999999999999985 4664

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=95.76  E-value=0.024  Score=50.35  Aligned_cols=64  Identities=17%  Similarity=0.161  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc--chhHHHHHHHHHHHHhcCChHHH-HHHHHHH
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEA-RIMYEKL  341 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EA-iaLYkkL  341 (433)
                      ...+..|..++..|+|.+|+.+|++|++......  .+-+.+-..++.||...|+.++| +..|++-
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            5677889999999999999999999998764321  22377888899999999999999 6667663

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=95.76  E-value=0.072  Score=48.80  Aligned_cols=79  Identities=14%  Similarity=0.011  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHh---CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 013954          279 KALKDGDSLMD---SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR  354 (433)
Q Consensus       279 ea~~~Gk~ame---rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk  354 (433)
                      ..+..|..++.   .|++.+|+.+|+++++.-+..    ..+.+.++.||...|+.++|+..|++.. .+|.-.-..++.
T Consensus       414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  489 (514)
T 2gw1_A          414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS----EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI  489 (514)
T ss_dssp             HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence            45677889999   999999999999999876543    4677889999999999999999999985 688766555555


Q ss_pred             HHhhHHH
Q 013954          355 QFMFSFQ  361 (433)
Q Consensus       355 rLlyiLE  361 (433)
                      .++...+
T Consensus       490 ~~~~~~~  496 (514)
T 2gw1_A          490 TFAEAAK  496 (514)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.74  E-value=0.071  Score=45.86  Aligned_cols=64  Identities=19%  Similarity=0.079  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHh----CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHH
Q 013954          279 KALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNAL  348 (433)
Q Consensus       279 ea~~~Gk~ame----rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~e  348 (433)
                      ..+..|..++.    .|++.+|+.+|++|++.-      ...+...|+.+|..    .++.++|+..|++....-+..
T Consensus        40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~  111 (273)
T 1ouv_A           40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE  111 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCcc
Confidence            44556777777    888888888888887651      45677778888888    888888888888876554444

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=95.73  E-value=0.051  Score=49.50  Aligned_cols=90  Identities=9%  Similarity=-0.048  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHhhcCCCCC-cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccc---hhHHHHHHHHHHHHhc
Q 013954          253 RTRQLLAAYKKSVGLNVD-PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE---LHGLAALQWSICQDSL  328 (433)
Q Consensus       253 rtke~LaaYrk~~Gl~Vd-p~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~---LGGeaqLwLAiAydA~  328 (433)
                      +..+.+..|++-..+--. +.....+...+..|..++..|+|.+|+.+|++|++.......   .-+.+...++.||...
T Consensus       118 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~  197 (383)
T 3ulq_A          118 EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL  197 (383)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHh
Confidence            344555556655433111 223346667788899999999999999999999988765432   2346777899999999


Q ss_pred             CChHHHHHHHHHHh
Q 013954          329 HRPKEARIMYEKLQ  342 (433)
Q Consensus       329 GR~~EAiaLYkkL~  342 (433)
                      |+.++|+..|++..
T Consensus       198 g~~~~A~~~~~~al  211 (383)
T 3ulq_A          198 KQYEDAISHFQKAY  211 (383)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence            99999999998864

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=95.71  E-value=0.048  Score=49.12  Aligned_cols=55  Identities=16%  Similarity=0.142  Sum_probs=25.4

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       283 ~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      .|..++..|++.+|+.+|+++++..+..    ..+...++.+|...|+.++|+.+|++.
T Consensus       277 l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a  331 (388)
T 1w3b_A          277 LANALKEKGSVAEAEDCYNTALRLCPTH----ADSLNNLANIKREQGNIEEAVRLYRKA  331 (388)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444444455555555555544443321    233334444455555555555555444

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=95.71  E-value=0.038  Score=51.31  Aligned_cols=78  Identities=13%  Similarity=0.059  Sum_probs=59.0

Q ss_pred             HHHHHHHHhC----------CchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013954          281 LKDGDSLMDS----------GKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV  349 (433)
Q Consensus       281 ~~~Gk~amer----------GkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV  349 (433)
                      +..|..++..          |+|.+|+.+|+++++.-+..    ..+.+.++.||...|+.++|+..|++.. .+|...-
T Consensus       422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  497 (537)
T 3fp2_A          422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS----EQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE  497 (537)
T ss_dssp             HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred             HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence            3345666666          99999999999999986543    3778999999999999999999999985 5777766


Q ss_pred             HHHHHHHhhHHHH
Q 013954          350 SKRARQFMFSFQA  362 (433)
Q Consensus       350 rKQAkrLlyiLEA  362 (433)
                      ..++..+.-...+
T Consensus       498 ~~~~~~~~~~~~~  510 (537)
T 3fp2_A          498 KLQATTFAEAAKI  510 (537)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHH
Confidence            6665555444433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=95.66  E-value=0.0067  Score=59.70  Aligned_cols=68  Identities=9%  Similarity=-0.011  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      .++..+..|..++..|+|.+|+++|++|++.-+..    ..+...++.||...|+.++|+..|++.. .||.-
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   73 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   73 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            34455677899999999999999999999986544    6778889999999999999999999985 67753

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=95.63  E-value=0.033  Score=56.37  Aligned_cols=66  Identities=14%  Similarity=0.007  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc----cccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      .++..++....+..+|+|.+|+++|+++++...    .....=..+.-.|+.+|...|+.++|+.+|++.
T Consensus       308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a  377 (490)
T 3n71_A          308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM  377 (490)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            455667777888899999999999999987642    122222566777999999999999999988874

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=95.63  E-value=0.062  Score=48.82  Aligned_cols=60  Identities=17%  Similarity=-0.033  Sum_probs=49.4

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  348 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  348 (433)
                      .+..|..++..|+|.+|+..|++     +    -.-++.+.++.+|...||.++|+..|+++. .+|+.-
T Consensus       104 ~~~la~~~~~~g~~~~Al~~l~~-----~----~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~  164 (291)
T 3mkr_A          104 LLMAASIYFYDQNPDAALRTLHQ-----G----DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT  164 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTT-----C----CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHhC-----C----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH
Confidence            67778999999999999999987     1    233577778899999999999999999985 577653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=95.60  E-value=0.025  Score=52.68  Aligned_cols=64  Identities=19%  Similarity=0.164  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      ..+..|..++..|+|.+|+.+|++|+++-+.+    ..+.+.++.||...|+.++|+..|++.. .+|+
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~  296 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN----PKALFRRGKAKAELGQMDSARDDFRKAQKYAPD  296 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            34667999999999999999999999886543    4678899999999999999999999985 4554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.60  E-value=0.036  Score=50.45  Aligned_cols=63  Identities=14%  Similarity=0.154  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh-------------HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-------------GLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG-------------GeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .+++|+.++..|+|.+|++.|.++++..+..+...             -.+-.+|+.+|...|+.++|+..|+++.
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~   82 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST   82 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45667777777777777777777776655544322             1345567777777777777777777663

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=95.58  E-value=0.03  Score=49.41  Aligned_cols=67  Identities=15%  Similarity=0.047  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc--chhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .+...+..|..++..|+|.+|+.+|++|++......  ..-..+...++.||...|+.++|+..|++..
T Consensus       266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  334 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            355566778888899999999999999887765432  2225667778999999999999999988863

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=95.57  E-value=0.033  Score=50.14  Aligned_cols=65  Identities=12%  Similarity=0.002  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccc--hhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE--LHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~--LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      +......|..+.. |+|.+|+.+|++|++..+....  .-..+...++.+|...|+.++|+..|++..
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  182 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK  182 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444566777777 9999999999999988765332  235677778999999999999999999875

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=95.55  E-value=0.034  Score=50.87  Aligned_cols=68  Identities=13%  Similarity=0.107  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc--ccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      ..+...+..|..++..|+|.+|+++|++|++....  ....-+.+...++.||...|+.++|+..|++..
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  249 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA  249 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45566678899999999999999999999987643  333456778889999999999999999999874

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=95.53  E-value=0.24  Score=50.18  Aligned_cols=116  Identities=11%  Similarity=0.091  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh----cccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-------c
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-------S  343 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-------s  343 (433)
                      ..+...-..|..+...|+|.+|+++|++|++.    ++....-=+..-..||..|...|+.+||+.||++-.       .
T Consensus       349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG  428 (490)
T 3n71_A          349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG  428 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            45555566688999999999999999999765    344444447788889999999999999999998752       3


Q ss_pred             CCCHHHHHHHHHHhhHHH-HHHhhhhcccCCCCcchHHHHHHhhcccccccCcc
Q 013954          344 HPNALVSKRARQFMFSFQ-AMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYPLQE  396 (433)
Q Consensus       344 HP~~eVrKQAkrLlyiLE-Ap~llKv~~~~~~~t~Yd~Yf~af~~~k~~y~~~e  396 (433)
                      .-|+.|.+.- .+|-..+ .+++.  .+.   -.-|+.==++..+++.++.-.|
T Consensus       429 ~~Hp~~~~~~-~~l~~~~~e~~~~--~~a---e~~~~~~~~~~~~~~~~~~~~~  476 (490)
T 3n71_A          429 PSHPITKDLE-AMRMQTEMELRMF--RQN---EFMYHKMREAALNNQPMQVMAE  476 (490)
T ss_dssp             TTSHHHHHHH-HHHHHHHHHHHHH--HHH---HHHHHHHHHHHHTC--------
T ss_pred             CCChHHHHHH-HHHHHHHHHHHHH--HHH---HHHHHHHHHHHhcCCCCccccC
Confidence            4455665533 3333333 22222  111   0123333455667777776555

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=95.51  E-value=0.034  Score=50.66  Aligned_cols=69  Identities=12%  Similarity=0.203  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc--chhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQS  343 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  343 (433)
                      ..+...+..|..++..|+|.+|+.+|++|++......  ..-+.+...++.||...|+.++|+..|++...
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4455677789999999999999999999998765432  33456777899999999999999999998754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=95.50  E-value=0.033  Score=54.29  Aligned_cols=84  Identities=12%  Similarity=0.062  Sum_probs=58.4

Q ss_pred             HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHH
Q 013954          255 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA  334 (433)
Q Consensus       255 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA  334 (433)
                      .+.+..|++-  +..+|..   .+..+..|..++..|+|.+|+.+|++|++.-+..    ..+.+.++.||...|+.++|
T Consensus         6 ~~A~~~~~~a--l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A   76 (568)
T 2vsy_A            6 PRELLQLRAA--VRHRPQD---FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH----PEAVARLGRVRWTQQRHAEA   76 (568)
T ss_dssp             -----------------CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC----HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHH--HHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHH
Confidence            3444555433  3444543   2446778999999999999999999999986544    56788899999999999999


Q ss_pred             HHHHHHHh-cCCCH
Q 013954          335 RIMYEKLQ-SHPNA  347 (433)
Q Consensus       335 iaLYkkL~-sHP~~  347 (433)
                      +..|++.. .+|+-
T Consensus        77 ~~~~~~al~~~p~~   90 (568)
T 2vsy_A           77 AVLLQQASDAAPEH   90 (568)
T ss_dssp             HHHHHHHHHHCTTC
T ss_pred             HHHHHHHHhcCCCC
Confidence            99999985 57753

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=95.42  E-value=0.046  Score=49.25  Aligned_cols=63  Identities=16%  Similarity=0.180  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      .+..|..+...|++.+|+.+|+++++..+..    ..+...++.+|...|+.++|+.+|++.. .+|+
T Consensus       308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~  371 (388)
T 1w3b_A          308 LNNLANIKREQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4556888999999999999999999876543    5677889999999999999999999985 5775

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=95.30  E-value=0.093  Score=47.97  Aligned_cols=90  Identities=7%  Similarity=-0.082  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHhhcCCCCC-cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccc---hhHHHHHHHHHHHHhc
Q 013954          253 RTRQLLAAYKKSVGLNVD-PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE---LHGLAALQWSICQDSL  328 (433)
Q Consensus       253 rtke~LaaYrk~~Gl~Vd-p~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~---LGGeaqLwLAiAydA~  328 (433)
                      +..+.+..|++-..+--. +.....++-.+..|..++..|+|..|+.+|++|++.......   .-+.+...++.||...
T Consensus       116 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~  195 (378)
T 3q15_A          116 EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF  195 (378)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh
Confidence            344555556554433211 223456667788899999999999999999999988765432   2356677899999999


Q ss_pred             CChHHHHHHHHHHh
Q 013954          329 HRPKEARIMYEKLQ  342 (433)
Q Consensus       329 GR~~EAiaLYkkL~  342 (433)
                      |+.++|+..|++..
T Consensus       196 ~~~~~A~~~~~~al  209 (378)
T 3q15_A          196 KHYDKALPHLEAAL  209 (378)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999998864

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.25  E-value=0.052  Score=54.12  Aligned_cols=63  Identities=13%  Similarity=-0.112  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhc----ccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKM----VFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v----~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      ..++.++.+-..|+|.+|+++|+++++..    ......=..+--.|+.+|...|+.++|+.||++.
T Consensus       300 ~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a  366 (433)
T 3qww_A          300 NVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI  366 (433)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            45566777778899999999999998754    2222222566677999999999999999999875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=94.96  E-value=0.064  Score=54.94  Aligned_cols=64  Identities=11%  Similarity=0.146  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      ..+..|..++..|+|.+|+..|++|++.-+..    .++...++.||...|+.++|+..|++.. ..|+
T Consensus       435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  499 (681)
T 2pzi_A          435 LPLMEVRALLDLGDVAKATRKLDDLAERVGWR----WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG  499 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhccCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            46677888888888888888888888776544    4566777888888888888888888864 4553

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=94.93  E-value=0.18  Score=43.29  Aligned_cols=64  Identities=14%  Similarity=0.046  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHh----CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHH
Q 013954          279 KALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNAL  348 (433)
Q Consensus       279 ea~~~Gk~ame----rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~e  348 (433)
                      ..+..|..++.    .|++.+|+.+|++|++.-      ...+...|+.+|..    .++.++|+..|++....-+..
T Consensus        76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  147 (273)
T 1ouv_A           76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGD  147 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHH
Confidence            34455788888    999999999999998761      56788999999999    999999999999987554443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=94.93  E-value=0.11  Score=49.27  Aligned_cols=64  Identities=9%  Similarity=-0.068  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      .+..|..++..|++.+|+.+|+++++.-+..    ..+...++.+|...|+.++|+.+|+++. .+|+-
T Consensus       519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~  583 (597)
T 2xpi_A          519 WANLGHAYRKLKMYDAAIDALNQGLLLSTND----ANVHTAIALVYLHKKIPGLAITHLHESLAISPNE  583 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence            4556888899999999999999999886543    4677889999999999999999999985 57754

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=94.82  E-value=0.053  Score=49.93  Aligned_cols=61  Identities=11%  Similarity=-0.001  Sum_probs=47.4

Q ss_pred             HHHHHHHhCCchhhhhhHHHHHHhhcccccch--h---HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          282 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL--H---GLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       282 ~~Gk~amerGkYreAV~~lEkA~~~v~~~S~L--G---GeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      ..|...+..|+|++|+++|++|+++.......  +   -.+-..++.+|...|+.++|+..|++..
T Consensus        56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~  121 (472)
T 4g1t_A           56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK  121 (472)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            36899999999999999999999876422111  1   1233468999999999999999998863

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=94.67  E-value=0.14  Score=46.05  Aligned_cols=67  Identities=16%  Similarity=0.003  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhH--HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG--LAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGG--eaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .+...+..|..++..|+|.+|+.+|++|++..+......+  .+...++.+|-..|+.++|+..|++..
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al  120 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF  120 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4445667789999999999999999999988765444443  345679999999999999999999874

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=94.60  E-value=0.055  Score=52.30  Aligned_cols=85  Identities=8%  Similarity=-0.049  Sum_probs=58.2

Q ss_pred             HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHH
Q 013954          254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE  333 (433)
Q Consensus       254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E  333 (433)
                      ..+.+..|++-.  .++|+.-.   .-+..|..++..|+|.+|+..|++|+++-+.+.    .+-..++.||...|+.++
T Consensus       148 ~~eAl~~~~~al--~l~P~~~~---a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~----~a~~~lg~~~~~~g~~~e  218 (382)
T 2h6f_A          148 LHEEMNYITAII--EEQPKNYQ---VWHHRRVLVEWLRDPSQELEFIADILNQDAKNY----HAWQHRQWVIQEFKLWDN  218 (382)
T ss_dssp             HHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHHHH--HHCCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH----HHHHHHHHHHHHcCChHH
Confidence            444455554333  34444322   245567788888888888888888888766553    455678888999999999


Q ss_pred             HHHHHHHHh-cCCCH
Q 013954          334 ARIMYEKLQ-SHPNA  347 (433)
Q Consensus       334 AiaLYkkL~-sHP~~  347 (433)
                      |+..|+++. .+|+-
T Consensus       219 Al~~~~~al~l~P~~  233 (382)
T 2h6f_A          219 ELQYVDQLLKEDVRN  233 (382)
T ss_dssp             HHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999998875 56653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=94.57  E-value=0.11  Score=46.76  Aligned_cols=68  Identities=15%  Similarity=0.033  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc----chhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS----ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S----~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      ..+...+..|..++..|+|.+|+.+|+++++......    .....+...++.+|-..|+.++|+.+|++..
T Consensus        91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  162 (373)
T 1hz4_A           91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI  162 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3444566789999999999999999999998775322    3345667789999999999999999999864

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=94.50  E-value=0.15  Score=43.56  Aligned_cols=64  Identities=17%  Similarity=0.074  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC----ChHHHHHHHHHHhcCCCHH
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH----RPKEARIMYEKLQSHPNAL  348 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G----R~~EAiaLYkkL~sHP~~e  348 (433)
                      +..+..|..++..|++.+|+.+|++|.+.      =...+...|+++|.. +    +.++|+..|++....-++.
T Consensus        19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~   86 (212)
T 3rjv_A           19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQ------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKS   86 (212)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHH
Confidence            44667788888888888888888888664      135777788888887 6    7888888888875444433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=94.43  E-value=0.068  Score=54.74  Aligned_cols=82  Identities=7%  Similarity=0.007  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954          249 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  328 (433)
Q Consensus       249 aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  328 (433)
                      .+..+..+.++.|++-.  .++|..   .+..+..|..++..|+|.+|+..|++|+++-+...    .+.+.++.||...
T Consensus       444 ~~~g~~~~A~~~~~~al--~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~lg~~~~~~  514 (681)
T 2pzi_A          444 LDLGDVAKATRKLDDLA--ERVGWR---WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL----APKLALAATAELA  514 (681)
T ss_dssp             HHHTCHHHHHHHHHHHH--HHHCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS----HHHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHh--ccCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHc
Confidence            34456677777777655  344443   33456677788888888888888888877766543    2233344444444


Q ss_pred             CChHHHHHHHHH
Q 013954          329 HRPKEARIMYEK  340 (433)
Q Consensus       329 GR~~EAiaLYkk  340 (433)
                      |+.++ +..|++
T Consensus       515 g~~~~-~~~~~~  525 (681)
T 2pzi_A          515 GNTDE-HKFYQT  525 (681)
T ss_dssp             TCCCT-TCHHHH
T ss_pred             CChHH-HHHHHH
Confidence            44444 444444

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=93.94  E-value=0.07  Score=51.16  Aligned_cols=65  Identities=12%  Similarity=0.053  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP  345 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP  345 (433)
                      ..|-.|..++..|+|.+|+.+|+++....  ...+...+.++|.+||..+|+.++|+..|++...-|
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence            56888999999999999999999765433  122457899999999999999999999999996433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=93.81  E-value=0.35  Score=43.23  Aligned_cols=82  Identities=12%  Similarity=0.156  Sum_probs=58.2

Q ss_pred             HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHH
Q 013954          255 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA  334 (433)
Q Consensus       255 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA  334 (433)
                      .+.+..|++-+-. ++|....   --+..|..+...|++.+|...|++|++.-+....   .+-+.++.++...|+.++|
T Consensus        81 ~~A~~~~~rAl~~-~~p~~~~---~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~A  153 (308)
T 2ond_A           81 DEAANIYERAIST-LLKKNML---LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKSG  153 (308)
T ss_dssp             HHHHHHHHHHHTT-TTTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHH-hCcccHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHhcCHHHH
Confidence            4555666554420 3454332   2455677888899999999999999986543322   2677788888999999999


Q ss_pred             HHHHHHHhc
Q 013954          335 RIMYEKLQS  343 (433)
Q Consensus       335 iaLYkkL~s  343 (433)
                      +.+|++...
T Consensus       154 ~~~~~~a~~  162 (308)
T 2ond_A          154 RMIFKKARE  162 (308)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999999864

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=93.55  E-value=0.2  Score=48.34  Aligned_cols=65  Identities=9%  Similarity=0.020  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHhCCc-hhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          279 KALKDGDSLMDSGK-LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       279 ea~~~Gk~amerGk-YreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      .-+..|..++..|+ |.+|+.+|++|+.+-+..    -.+-..++.||..+|+.++|+..|++.. ..|.-
T Consensus       133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~----~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~  199 (382)
T 2h6f_A          133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN----YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN  199 (382)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence            34556899999997 999999999999887654    3456678999999999999999999985 45543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=93.41  E-value=1.2  Score=39.87  Aligned_cols=81  Identities=16%  Similarity=0.153  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHh---CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954          252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMD---SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  328 (433)
Q Consensus       252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~ame---rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  328 (433)
                      .+..+.+..|++-..  ++|.....   -+  +...++   .|++.+|+..|++|++..+..    ..+-+.++..+...
T Consensus       148 ~~~~~A~~~~~~a~~--~~p~~~~~---~~--~~a~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~  216 (308)
T 2ond_A          148 EGIKSGRMIFKKARE--DARTRHHV---YV--TAALMEYYCSKDKSVAFKIFELGLKKYGDI----PEYVLAYIDYLSHL  216 (308)
T ss_dssp             HCHHHHHHHHHHHHT--STTCCTHH---HH--HHHHHHHHTSCCHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHh--cCCCCHHH---HH--HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHC
Confidence            344455566665543  33432111   22  333343   699999999999999987753    45567788889999


Q ss_pred             CChHHHHHHHHHHhc
Q 013954          329 HRPKEARIMYEKLQS  343 (433)
Q Consensus       329 GR~~EAiaLYkkL~s  343 (433)
                      |+.++|+++|++...
T Consensus       217 g~~~~A~~~~~~al~  231 (308)
T 2ond_A          217 NEDNNTRVLFERVLT  231 (308)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999999976

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.16  E-value=0.23  Score=45.08  Aligned_cols=98  Identities=10%  Similarity=0.095  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCC------------cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccch
Q 013954          246 ARAAKEERTRQLLAAYKKSVGLNVD------------PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL  313 (433)
Q Consensus       246 EkaaRe~rtke~LaaYrk~~Gl~Vd------------p~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~L  313 (433)
                      ++..+..+..+.+..|.+-.-++-+            .......+..+..|..+++.|+|.+|+++|+.++.....-..-
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            3456667788888888764322211            1223334446678999999999999999999887655432211


Q ss_pred             ----------h--------------------------------HHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954          314 ----------H--------------------------------GLAALQWSICQDSLHRPKEARIMYEKLQS  343 (433)
Q Consensus       314 ----------G--------------------------------GeaqLwLAiAydA~GR~~EAiaLYkkL~s  343 (433)
                                |                                ..+.+.|+.+|...|+.++|+.+++++..
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence                      1                                12344577778888888888888888873

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=93.16  E-value=0.25  Score=46.82  Aligned_cols=58  Identities=7%  Similarity=0.011  Sum_probs=29.4

Q ss_pred             HHHHHhCCchhhhhhHHHHHHhhccc---ccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          284 GDSLMDSGKLKEALPFYEKVMNKMVF---KSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       284 Gk~amerGkYreAV~~lEkA~~~v~~---~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      |..++..|++.+|+.+|+++++..+.   .......+...++.+|-..|+.++|+.+|+++
T Consensus       482 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (597)
T 2xpi_A          482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG  542 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            44555555555555555555554321   11111344445555555566666666666554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=93.07  E-value=0.48  Score=38.43  Aligned_cols=64  Identities=19%  Similarity=0.131  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHh----CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCH
Q 013954          278 EKALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNA  347 (433)
Q Consensus       278 eea~~~Gk~ame----rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~  347 (433)
                      ...+..|..++.    .+++.+|+.+|++|.+.      =...++.+|+++|..    ..+.++|+..|++-..+-+.
T Consensus        58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~  129 (138)
T 1klx_A           58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  129 (138)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence            345566666666    67788888888887654      135677778888877    77788888888777654443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.78  E-value=0.78  Score=44.53  Aligned_cols=72  Identities=11%  Similarity=0.182  Sum_probs=59.7

Q ss_pred             HHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc--------CCCHHHHHHH
Q 013954          282 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS--------HPNALVSKRA  353 (433)
Q Consensus       282 ~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s--------HP~~eVrKQA  353 (433)
                      +....++..|++.+|+..++.++..-|..-++    ..+|..||-..||+.+|+..|+++..        -|.++++.--
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~----~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEHPYREPL----WTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH----HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            34677889999999999999998888766554    45678899999999999999999864        5888888877


Q ss_pred             HHHh
Q 013954          354 RQFM  357 (433)
Q Consensus       354 krLl  357 (433)
                      ++|+
T Consensus       252 ~~il  255 (388)
T 2ff4_A          252 ERIL  255 (388)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7765

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=92.19  E-value=0.46  Score=33.39  Aligned_cols=68  Identities=18%  Similarity=0.286  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954          253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  329 (433)
Q Consensus       253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  329 (433)
                      +..+.+..|++-.  .++|..   ....+..|..++..|+|.+|+.+|+++++.-+..    ..+...++.+|...|
T Consensus        24 ~~~~A~~~~~~a~--~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           24 DYDEAIEYYQKAL--ELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHH--hcCCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcC
Confidence            4445555565444  233433   2346778999999999999999999999986543    456677777776554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=92.16  E-value=0.27  Score=37.06  Aligned_cols=50  Identities=8%  Similarity=-0.084  Sum_probs=41.7

Q ss_pred             hhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          294 KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       294 reAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      .+|+.+|++++..-+..    ..+.+.++.+|...|+.++|+..|++.. .+|..
T Consensus         2 ~~a~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   52 (115)
T 2kat_A            2 QAITERLEAMLAQGTDN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY   52 (115)
T ss_dssp             CCHHHHHHHHHTTTCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence            57899999999876644    4678889999999999999999999985 56653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=92.13  E-value=2  Score=36.55  Aligned_cols=68  Identities=7%  Similarity=-0.099  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHh----CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHhcCCC
Q 013954          277 CEKALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-H-----RPKEARIMYEKLQSHPN  346 (433)
Q Consensus       277 ~eea~~~Gk~ame----rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-G-----R~~EAiaLYkkL~sHP~  346 (433)
                      ....+..|..++.    .+++.+|+.+|++|.++ +.    ...++.+|+.+|..- |     +.++|+..|++-..+-+
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~----~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SR----TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SC----TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CC----CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            4556778888888    88999999999999877 22    234789999999754 3     89999999999875555


Q ss_pred             HHH
Q 013954          347 ALV  349 (433)
Q Consensus       347 ~eV  349 (433)
                      .+-
T Consensus       200 ~~A  202 (212)
T 3rjv_A          200 DTG  202 (212)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.11  E-value=0.71  Score=36.27  Aligned_cols=64  Identities=16%  Similarity=-0.005  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhCCc---hhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          279 KALKDGDSLMDSGK---LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       279 ea~~~Gk~amerGk---YreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      -.+..|..+|-.+.   ..+|..+|++|+..=+.+    ..+.+.|+..+-..|+.++||..|+++. ..|.
T Consensus         8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~----~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN----EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            35566777764444   899999999999977544    5678888999999999999999999985 5666

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=91.98  E-value=0.16  Score=37.01  Aligned_cols=77  Identities=17%  Similarity=0.177  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954          250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  329 (433)
Q Consensus       250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  329 (433)
                      +..+..+.+..|++-+  .++|....  ...+..|..++..|+|.+|+.+|++|+.+-+......    .+        +
T Consensus        12 ~~~~~~~A~~~~~~al--~~~p~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----~~--------~   75 (99)
T 2kc7_A           12 NQGDIENALQALEEFL--QTEPVGKD--EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ----AR--------K   75 (99)
T ss_dssp             HHTCHHHHHHHHHHHH--HHCSSTHH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH----HH--------H
T ss_pred             HcCCHHHHHHHHHHHH--HHCCCcHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH----HH--------H
Confidence            3445566666666544  34454322  1467889999999999999999999999887665443    11        5


Q ss_pred             ChHHHHHHHHHHh
Q 013954          330 RPKEARIMYEKLQ  342 (433)
Q Consensus       330 R~~EAiaLYkkL~  342 (433)
                      +..+|+..|+++.
T Consensus        76 ~~~~a~~~~~~~~   88 (99)
T 2kc7_A           76 MVMDILNFYNKDM   88 (99)
T ss_dssp             HHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHHh
Confidence            6677777777653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=91.77  E-value=0.55  Score=43.17  Aligned_cols=71  Identities=11%  Similarity=-0.030  Sum_probs=45.5

Q ss_pred             HHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHhhH
Q 013954          285 DSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFMFS  359 (433)
Q Consensus       285 k~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLlyi  359 (433)
                      ......|++.+|+.+|++|+..-+..    ..+...++.+|...|+.++|+..|++.. .||+-..--...-++|.
T Consensus       221 ~~~~~~~~~~~a~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~  292 (472)
T 4g1t_A          221 KMREEGEEEGEGEKLVEEALEKAPGV----TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR  292 (472)
T ss_dssp             HCC------CHHHHHHHHHHHHCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHhCccH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            33445567777777777777765433    3566778999999999999999999974 78875443333334443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.46  E-value=0.87  Score=35.76  Aligned_cols=30  Identities=10%  Similarity=-0.030  Sum_probs=27.2

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhccc
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVF  309 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~  309 (433)
                      .+-.|..+|..|+|++|+.+|+++++..+.
T Consensus        46 ~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A           46 LSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            455699999999999999999999998877

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=89.78  E-value=2  Score=34.80  Aligned_cols=60  Identities=8%  Similarity=-0.063  Sum_probs=51.0

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHH
Q 013954          283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNAL  348 (433)
Q Consensus       283 ~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~e  348 (433)
                      .|..++..+.+.+|+.+|++|.+.      =...++..|+++|..    ..+.++|+..|++-...-++.
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~   94 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQD   94 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHH
Confidence            788888888899999999999876      246899999999998    899999999999987554443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=89.45  E-value=2.3  Score=40.95  Aligned_cols=58  Identities=7%  Similarity=0.060  Sum_probs=47.0

Q ss_pred             HhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013954          288 MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV  349 (433)
Q Consensus       288 merGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV  349 (433)
                      +..|++.+|...||+|++..|..    ..+-+.++..+...|+.++|+.+|++.. .||+.++
T Consensus        23 ~~~~~~~~a~~~~e~al~~~P~~----~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~l   81 (530)
T 2ooe_A           23 AQNQPIDKARKTYERLVAQFPSS----GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDL   81 (530)
T ss_dssp             HHSSCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHH
Confidence            67899999999999999988755    3344446777778899999999999985 6898664

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=88.84  E-value=0.93  Score=43.62  Aligned_cols=51  Identities=20%  Similarity=0.395  Sum_probs=40.2

Q ss_pred             CCchh-------hhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954          290 SGKLK-------EALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS  343 (433)
Q Consensus       290 rGkYr-------eAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  343 (433)
                      .|++.       +|+..|++|++.+.++   ...+-+.++..++..|+.++|+.+|+++..
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~---~~~l~~~~~~~~~~~g~~~~A~~~~~~al~  349 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKK---NMLLYFAYADYEESRMKYEKVHSIYNRLLA  349 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence            78887       8999999999743333   245666788889999999999999999864

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=87.13  E-value=3.6  Score=39.15  Aligned_cols=48  Identities=10%  Similarity=0.108  Sum_probs=24.5

Q ss_pred             CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHhc
Q 013954          290 SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQS  343 (433)
Q Consensus       290 rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~s  343 (433)
                      .+++.+|+.+|++|.+.-      .-.+..+|+.+|..    .++.++|+.+|++...
T Consensus       200 ~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~  251 (490)
T 2xm6_A          200 ERNDAISAQWYRKSATSG------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE  251 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            455555555555554431      12445555555554    5555555555555543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=87.05  E-value=2.1  Score=40.66  Aligned_cols=63  Identities=13%  Similarity=0.044  Sum_probs=48.9

Q ss_pred             HHHHHHHHHh----CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHH
Q 013954          280 ALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNAL  348 (433)
Q Consensus       280 a~~~Gk~ame----rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~e  348 (433)
                      .+..|..++.    .+++.+|+.+|++|.+.      =...++..|+.+|..    .++.++|+..|++....-+..
T Consensus        78 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~  148 (490)
T 2xm6_A           78 EYVLGLRYMNGEGVPQDYAQAVIWYKKAALK------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDS  148 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence            4555777888    88999999999998764      145788889999988    788999999999886544443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=86.14  E-value=3.3  Score=40.22  Aligned_cols=65  Identities=9%  Similarity=-0.058  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  345 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  345 (433)
                      ..+-.|..++..|+|.+|+..|+++++.-+  +.-.=++.+-++.+|-..||.+.|+.++++++ .+|
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~--~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~  167 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGIDNDE--AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE  167 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTSSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCC--CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            356779999999999999999999877554  24555788889999999999999999999996 577

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=84.67  E-value=1.3  Score=45.43  Aligned_cols=64  Identities=13%  Similarity=-0.033  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhH---------------------HHHHHHHHHHHhcCChHHHHHH
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG---------------------LAALQWSICQDSLHRPKEARIM  337 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGG---------------------eaqLwLAiAydA~GR~~EAiaL  337 (433)
                      .-...+..++.-|+|.+||+.|++|..--.-+.-+.+                     +-...++-+|+..|+++|||.+
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~l  229 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITM  229 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHH
Confidence            4456688999999999999999998322111111111                     1122456789999999999999


Q ss_pred             HHHHh
Q 013954          338 YEKLQ  342 (433)
Q Consensus       338 YkkL~  342 (433)
                      +++--
T Consensus       230 Le~aL  234 (449)
T 1b89_A          230 LEAAL  234 (449)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98863

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=84.42  E-value=5.7  Score=35.19  Aligned_cols=79  Identities=13%  Similarity=0.127  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHhCC---chhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHH
Q 013954          278 EKALKDGDSLMDSG---KLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRA  353 (433)
Q Consensus       278 eea~~~Gk~amerG---kYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQA  353 (433)
                      +..|+-|-.+....   .+++++.+||.++..-.+  .-.=+.-..||++|=.+|+.++|+..+++|- ..|+-   .||
T Consensus        33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p--~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n---~QA  107 (152)
T 1pc2_A           33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN---NQA  107 (152)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC---HHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHH
Confidence            45677888888877   888999999999886511  1345788999999999999999999999994 78854   467


Q ss_pred             HHHhhHHH
Q 013954          354 RQFMFSFQ  361 (433)
Q Consensus       354 krLlyiLE  361 (433)
                      +.|..-++
T Consensus       108 ~~Lk~~ie  115 (152)
T 1pc2_A          108 KELERLID  115 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766665

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=83.86  E-value=2.6  Score=42.25  Aligned_cols=68  Identities=18%  Similarity=0.061  Sum_probs=53.4

Q ss_pred             HHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHhh
Q 013954          286 SLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMF  358 (433)
Q Consensus       286 ~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLly  358 (433)
                      .++-.|++.+|+.++++|+.+=  ++-   .+-+.++.+|...|+.++|++.|++- .-.|...+-.-++.|.|
T Consensus       286 ~~l~~gd~d~A~~~l~rAl~Ln--~s~---~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~F  354 (372)
T 3ly7_A          286 SALVKGKTDESYQAINTGIDLE--MSW---LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF  354 (372)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC--CCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHSSS
T ss_pred             HHHhCCCHHHHHHHHHHHHhcC--CCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCcee
Confidence            3455799999999999999994  342   34467889999999999999999776 57999887665555544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=83.66  E-value=1.9  Score=32.48  Aligned_cols=58  Identities=14%  Similarity=0.181  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhH
Q 013954          253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG  315 (433)
Q Consensus       253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGG  315 (433)
                      +..+.+..|++-+  .++|..-.   ..+..|..++..|++.+|+..|++|+++.+.....+-
T Consensus        22 ~~~~A~~~~~~al--~~~p~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~   79 (100)
T 3ma5_A           22 NASRALALFEELV--ETDPDYVG---TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKD   79 (100)
T ss_dssp             CHHHHHHHHHHHH--HHSTTCTH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             CHHHHHHHHHHHH--HhCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhH
Confidence            3445555555444  34454322   4677899999999999999999999988765544443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=83.62  E-value=3.8  Score=39.69  Aligned_cols=73  Identities=15%  Similarity=0.099  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhH-------------------HHHHHHHHHHHhcCChHHHH
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG-------------------LAALQWSICQDSLHRPKEAR  335 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGG-------------------eaqLwLAiAydA~GR~~EAi  335 (433)
                      .+++..+..|..+...|...+|+..|+.|+.+.... -|.|                   .+...++-++-+.|++.+|+
T Consensus       113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~-~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~  191 (388)
T 2ff4_A          113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGP-VLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI  191 (388)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS-TTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC-CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            677888899999999999999999999998876321 2222                   23345677788999999999


Q ss_pred             HHHHHHh-cCCCHH
Q 013954          336 IMYEKLQ-SHPNAL  348 (433)
Q Consensus       336 aLYkkL~-sHP~~e  348 (433)
                      ..+++|. .||..+
T Consensus       192 ~~l~~~~~~~P~~E  205 (388)
T 2ff4_A          192 AELEALTFEHPYRE  205 (388)
T ss_dssp             HHHHHHHHHSTTCH
T ss_pred             HHHHHHHHhCCCCH
Confidence            8888885 799877

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=82.12  E-value=4.1  Score=36.70  Aligned_cols=67  Identities=16%  Similarity=0.203  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccc----cchhHHHH-HHHHHHHHhcCChHHHHHHHHHH
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK----SELHGLAA-LQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~----S~LGGeaq-LwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      ..-..+|..|..+|+.|+|-+|=+.||.+-...+..    .-+.|.+| +--|+-+-..|+..=|..|+++-
T Consensus        30 ~~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A  101 (161)
T 2ijq_A           30 ETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS  101 (161)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            345568999999999999999999999997666443    56889999 99999999999999999999864

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=81.81  E-value=1.4  Score=45.18  Aligned_cols=52  Identities=17%  Similarity=0.023  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .-...|..+++.|+|.+|+.+|.++            .-..-||.||-.+|+.++|+..|++..
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg~yq~AVea~~KA~  175 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKAN  175 (449)
T ss_dssp             -------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHHHHhccHHHHHHHHHHcC
Confidence            4567799999999999999999987            244557899999999999999999983

>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A

Probab=80.71  E-value=2.3  Score=34.76  Aligned_cols=60  Identities=22%  Similarity=0.181  Sum_probs=48.7

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcc--cccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMV--FKSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~--~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      .|..|..+|+.|+|-+|=+.||.+-...+  .+.-+.|.+|+--|.-+-.-|+.  |..|+++-
T Consensus         4 ~~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a   65 (94)
T 2cwy_A            4 DWEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKA   65 (94)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHH
Confidence            47889999999999999999999976663  24458899998888877677777  88887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	433
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.29
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.93
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.9
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.9
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.8
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.75
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.75
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.71
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.69
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.46
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.43
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.3
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.3
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.25
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.12
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.1
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.09
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	96.99
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.94
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	96.9
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.83
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.79
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.76
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.75
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.75
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.71
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.62
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.6
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.56
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.44
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.38
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	96.3
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	95.63
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	95.52
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	95.5
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	95.04
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	94.2
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	94.03
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	92.26
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	92.15
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	90.95
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	90.44
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	89.39
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	89.13
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	87.96
d2ijqa1	145	Hypothetical protein rrnAC1037 {Haloarcula marismo	85.72
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	80.01

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.2e-06  Score=67.00  Aligned_cols=72  Identities=11%  Similarity=0.036  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh---HHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHH
Q 013954          277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKL-QSHPNAL  348 (433)
Q Consensus       277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~e  348 (433)
                      ++.-|+.|..+++.|+|.+|+++|++|+...+......   +.+--.|+.||...|+.++|+..|++. +-.|+-.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~   80 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence            34568999999999999999999999999876543322   566677999999999999999999996 5566643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=1.9e-05  Score=63.24  Aligned_cols=61  Identities=15%  Similarity=0.272  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      ++..+.|..+|..|+|.+|+.+|++|+++-|.++    .+-..+++||..+|+.++|+..|++..
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~----~~~~~lg~~y~~~~~~~~Ai~~~~~al   65 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKMQQPEQALADCRRAL   65 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHhHHHHHhhhhhhhhhhHHHHHHH
Confidence            3444556666666666666666666665554432    233334555555555555555555553

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.7e-05  Score=61.86  Aligned_cols=67  Identities=13%  Similarity=0.121  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      ++++..+.|..+|..|+|++|+..|++|+..-|..    ..+-..++.||...|+.++|+..|++.. .+|+
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~   69 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD   69 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc----hhhhhcccccccccccccccchhhhhHHHhccc
Confidence            46677788999999999999999999998876555    4567778899999999999999998885 4655

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.90  E-value=2.2e-05  Score=64.34  Aligned_cols=73  Identities=16%  Similarity=0.198  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHH-----------HHHHHHHHHhcCChHHHHHHHHHHh-
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLA-----------ALQWSICQDSLHRPKEARIMYEKLQ-  342 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGea-----------qLwLAiAydA~GR~~EAiaLYkkL~-  342 (433)
                      +.++...+.|..+|..|.|.+|+.+|.+|+..++....+..+.           -+.+|+||-.+|+.++|+..|++.. 
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            6788888999999999999999999999999988777665432           3458999999999999999999985 


Q ss_pred             cCCCH
Q 013954          343 SHPNA  347 (433)
Q Consensus       343 sHP~~  347 (433)
                      .+|+-
T Consensus        93 l~p~~   97 (168)
T d1kt1a1          93 LDSAN   97 (168)
T ss_dssp             HCTTC
T ss_pred             cccch
Confidence            46754

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.80  E-value=7.5e-05  Score=57.75  Aligned_cols=77  Identities=19%  Similarity=0.157  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHH
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQF  356 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrL  356 (433)
                      +..|..|..+|..|+|.+|+..|++|+..-|.    .-++..+|+.||...|+.++|+..|++. +-+|+-.-.-...-+
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~   92 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV   92 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccc----cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHH
Confidence            34688999999999999999999999988654    3588899999999999999999999996 468875433333333


Q ss_pred             hh
Q 013954          357 MF  358 (433)
Q Consensus       357 ly  358 (433)
                      .|
T Consensus        93 ~y   94 (112)
T d1hxia_          93 SH   94 (112)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.75  E-value=4.4e-05  Score=61.95  Aligned_cols=73  Identities=14%  Similarity=0.222  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhH------------HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG------------LAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGG------------eaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      +++....+.|..+|..|+|.+|+..|++|+..++.......            .+.+.+++||-.+|++++|+..|++..
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            56667788999999999999999999999988765443221            233459999999999999999999974


Q ss_pred             -cCCCH
Q 013954          343 -SHPNA  347 (433)
Q Consensus       343 -sHP~~  347 (433)
                       .||.-
T Consensus        95 ~~~p~~  100 (153)
T d2fbna1          95 KIDKNN  100 (153)
T ss_dssp             HHSTTC
T ss_pred             cccchh
Confidence             67754

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=0.00016  Score=57.91  Aligned_cols=95  Identities=11%  Similarity=0.023  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954          249 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  328 (433)
Q Consensus       249 aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  328 (433)
                      .+..+..+.+..|++-.  .++|..   +.--+..|..++..|++.+|++.|++|+++-+.    ...+...++.||..+
T Consensus        21 ~~~~~y~~A~~~~~~al--~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~----~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          21 FKAKDYENAIKFYSQAI--ELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKK----YIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHTTCHHHHHHHHHHHH--HHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHhhhcc--ccchhh---hhhhhhhHHHHHhccccchHHHHHHHHHHHccc----chHHHHHHHHHHHHc
Confidence            45556777788887655  555654   333567889999999999999999999887644    346778899999999


Q ss_pred             CChHHHHHHHHHHh-cCCC-HHHHHH
Q 013954          329 HRPKEARIMYEKLQ-SHPN-ALVSKR  352 (433)
Q Consensus       329 GR~~EAiaLYkkL~-sHP~-~eVrKQ  352 (433)
                      |+.++|+..|++.. .+|+ .++...
T Consensus        92 g~~~eA~~~~~~a~~~~p~~~~~~~~  117 (159)
T d1a17a_          92 GKFRAALRDYETVVKVKPHDKDAKMK  117 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            99999999999986 4665 443333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.00011  Score=57.87  Aligned_cols=103  Identities=18%  Similarity=0.141  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh---HHHHHHHHHHH
Q 013954          249 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQ  325 (433)
Q Consensus       249 aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG---GeaqLwLAiAy  325 (433)
                      .+..+..+.+..|.+-.  +++|..-   .-.+..|..++..|+|.+|++.|++|+++-+......   |.+-+.++.++
T Consensus        15 ~~~~~y~~Ai~~y~~al--~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~   89 (128)
T d1elra_          15 YKKKDFDTALKHYDKAK--ELDPTNM---TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY   89 (128)
T ss_dssp             HHTTCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH--HhCcccH---HHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence            34455677888887655  5677643   3467789999999999999999999999887766443   66778899999


Q ss_pred             HhcCChHHHHHHHHHH-hcCCCHHHHHHHHHH
Q 013954          326 DSLHRPKEARIMYEKL-QSHPNALVSKRARQF  356 (433)
Q Consensus       326 dA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrL  356 (433)
                      .++++.++|+.+|++. .-|+++++.+.-.++
T Consensus        90 ~~~~~~~~A~~~~~kal~~~~~~~~~~~l~~~  121 (128)
T d1elra_          90 FKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA  121 (128)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            9999999999999886 579999887665543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=7.5e-05  Score=61.54  Aligned_cols=71  Identities=20%  Similarity=0.287  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhH-----------HHHHHHHHHHHhcCChHHHHHHHHHHh-
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG-----------LAALQWSICQDSLHRPKEARIMYEKLQ-  342 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGG-----------eaqLwLAiAydA~GR~~EAiaLYkkL~-  342 (433)
                      +.+....+.|..+|.+|+|.+|+..|++|++.++..+.+-.           .+-..+|.||-..|+.++|+..|++.. 
T Consensus        11 ~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~   90 (170)
T d1p5qa1          11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE   90 (170)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence            34555557788888888888888888888777766554322           233446777777777777777777764 


Q ss_pred             cCC
Q 013954          343 SHP  345 (433)
Q Consensus       343 sHP  345 (433)
                      .+|
T Consensus        91 ~~p   93 (170)
T d1p5qa1          91 LDS   93 (170)
T ss_dssp             HCT
T ss_pred             ccc
Confidence            455

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00017  Score=56.74  Aligned_cols=63  Identities=14%  Similarity=0.032  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      ++...-..|..+|..|+|.+|+.+|++|+++-+..    -.+...++.||-..|+.++|+..|++..
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAI   65 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence            44556678999999999999999999999987654    3577789999999999999999999963

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.00029  Score=57.94  Aligned_cols=68  Identities=9%  Similarity=-0.067  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  346 (433)
                      ..++.-|..|..++..|+|.+|+..|++|+++-|-.    -++-..++.||...|+.++|+..|++.. .+|+
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  103 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  103 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC----HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh
Confidence            455667788888888888888888888888876544    3455668888888888888888888875 4664

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00037  Score=59.17  Aligned_cols=82  Identities=15%  Similarity=0.171  Sum_probs=60.1

Q ss_pred             HHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHH
Q 013954          260 AYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYE  339 (433)
Q Consensus       260 aYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYk  339 (433)
                      .|.|.....-+...+ ..+..|+.|..++..|+|.+|+..|++|++.=|..    .++-.+++.||...|+.++|+..|+
T Consensus         3 ~~~~~~~~~~~n~~~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~~~~~~A~~~~~   77 (323)
T d1fcha_           3 TYDKGYQFEEENPLR-DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTTQAENEQELLAISALR   77 (323)
T ss_dssp             HHHCCCCCCSSCTTT-TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             chHHhHhhcccCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHH
Confidence            455555555554322 22236888999999999999999999988765443    5677788899999999999999998


Q ss_pred             HHh-cCCC
Q 013954          340 KLQ-SHPN  346 (433)
Q Consensus       340 kL~-sHP~  346 (433)
                      ++. .+|+
T Consensus        78 ~al~~~p~   85 (323)
T d1fcha_          78 RCLELKPD   85 (323)
T ss_dssp             HHHHHCTT
T ss_pred             hhhccccc
Confidence            874 4665

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.30  E-value=0.00038  Score=55.97  Aligned_cols=68  Identities=16%  Similarity=0.057  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh--------HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--------GLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG--------GeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .++...+..|...|..|+|.+|+..|++|+++.+......        ..+-..++.||..+|+.++|+..|++-.
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            4455677889999999999999999999999776544321        3455678999999999999998888753

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.00037  Score=55.48  Aligned_cols=86  Identities=12%  Similarity=0.058  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh
Q 013954          248 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  327 (433)
Q Consensus       248 aaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  327 (433)
                      ..+..+..+.+..|.+-+  +++|..-   ..-+..|..++..|+|.+|+.+|++|+++-|..    ..+-+.++.||..
T Consensus        14 ~~~~g~~~~Ai~~~~kal--~~~p~~~---~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~----~~a~~~lg~~~~~   84 (201)
T d2c2la1          14 LFVGRKYPEAAACYGRAI--TRNPLVA---VYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHH--HHCSCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH--HhCCCCH---HHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc----HHHHHHHHHHHHH
Confidence            455667788889998765  5667653   346678999999999999999999999886654    3467889999999


Q ss_pred             cCChHHHHHHHHHHh
Q 013954          328 LHRPKEARIMYEKLQ  342 (433)
Q Consensus       328 ~GR~~EAiaLYkkL~  342 (433)
                      +|+.++|+..|++..
T Consensus        85 l~~~~~A~~~~~~al   99 (201)
T d2c2la1          85 MESYDEAIANLQRAY   99 (201)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999999863

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.12  E-value=0.00041  Score=55.76  Aligned_cols=90  Identities=17%  Similarity=0.152  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcch---------HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh------
Q 013954          250 KEERTRQLLAAYKKSVGLNVDPKL---------KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------  314 (433)
Q Consensus       250 Re~rtke~LaaYrk~~Gl~Vdp~~---------k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG------  314 (433)
                      +..+..+.+..|++-+-  +.+..         -..+..-...|..++..|+|.+|+..+++++...+....+.      
T Consensus        21 ~~g~y~~Ai~~y~~Al~--i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~   98 (156)
T d2hr2a1          21 VAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL   98 (156)
T ss_dssp             HHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred             HcCCHHHHHHHHHHHHH--hChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence            33457778888877653  22221         11233344679999999999999999999998877655543      


Q ss_pred             -HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          315 -GLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       315 -GeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                       ..+...++.||..+||.++|+..|++-
T Consensus        99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~A  126 (156)
T d2hr2a1          99 WISAVYSRALALDGLGRGAEAMPEFKKV  126 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence             345667899999999999999999985

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.0017  Score=50.08  Aligned_cols=90  Identities=18%  Similarity=0.144  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh
Q 013954          248 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  327 (433)
Q Consensus       248 aaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  327 (433)
                      ..+..+..+.+..|.+-.  .++|..-.   --+..|..++..|+|.+|+..|++|+..-+..    .++.++++.||..
T Consensus        13 ~~~~g~~~eAi~~~~~al--~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~g~~~~~   83 (117)
T d1elwa_          13 ALSVGNIDDALQCYSEAI--KLDPHNHV---LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW----GKGYSRKAAALEF   83 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH--hcCCcchh---hhhcccccccccccccccchhhhhHHHhccch----hhHHHHHHHHHHH
Confidence            455667788888887654  56666543   36677999999999999999999999887653    4678999999999


Q ss_pred             cCChHHHHHHHHHHh-cCCC
Q 013954          328 LHRPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       328 ~GR~~EAiaLYkkL~-sHP~  346 (433)
                      +|+.++|+..|++.. .-|+
T Consensus        84 ~~~~~~A~~~~~~a~~~~p~  103 (117)
T d1elwa_          84 LNRFEEAKRTYEEGLKHEAN  103 (117)
T ss_dssp             TTCHHHHHHHHHHHHTTCTT
T ss_pred             ccCHHHHHHHHHHHHHhCCC
Confidence            999999999999996 4555

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00038  Score=58.01  Aligned_cols=84  Identities=10%  Similarity=-0.013  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954          250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  329 (433)
Q Consensus       250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  329 (433)
                      +.-+..+.+..|++-.  ..+|.   .....+..|..++..|+|.+|+.+|++|++.-|..    .++...++.||...|
T Consensus        11 ~~G~~~~A~~~~~~~l--~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_          11 QAGDFEAAERHCMQLW--RQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL----AEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHTCHHHHHHHHHHHH--HHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHH--HhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHhhhhc
Confidence            3445667777776543  44443   24556777888888899999999998888876543    466777888888889


Q ss_pred             ChHHHHHHHHHHh
Q 013954          330 RPKEARIMYEKLQ  342 (433)
Q Consensus       330 R~~EAiaLYkkL~  342 (433)
                      +.++|+..|+++.
T Consensus        82 ~~~~A~~~~~~~~   94 (388)
T d1w3ba_          82 QLQEAIEHYRHAL   94 (388)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             ccccccccccccc
Confidence            9999988888885

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.001  Score=55.27  Aligned_cols=54  Identities=17%  Similarity=0.230  Sum_probs=28.0

Q ss_pred             HHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954          284 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  341 (433)
Q Consensus       284 Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  341 (433)
                      |..++..|+|.+|+.+|++|++.-|..    ..+.+.++.||...|+.++|+..|++.
T Consensus       312 ~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a  365 (388)
T d1w3ba_         312 ANIKREQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALMHYKEA  365 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            445555555555555555555443321    334445555555555555555555554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.94  E-value=0.0023  Score=51.43  Aligned_cols=72  Identities=14%  Similarity=0.033  Sum_probs=60.4

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHHHHHHH
Q 013954          281 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSKRARQF  356 (433)
Q Consensus       281 ~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkrL  356 (433)
                      +..|..++..|+|.+|+.+|++|+..-|.++    .+..+++.||-.+|+.++|+..|++.. -+| |.+++.+-..+
T Consensus        71 ~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~----ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~  144 (153)
T d2fbna1          71 LNLATCYNKNKDYPKAIDHASKVLKIDKNNV----KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC  144 (153)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHhcccchhhhhhhccccccchhh----hhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3579999999999999999999999876664    688999999999999999999999996 566 46666554444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.0033  Score=51.41  Aligned_cols=87  Identities=17%  Similarity=0.123  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954          252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  331 (433)
Q Consensus       252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  331 (433)
                      .+..+.+..|++-.  .++|..-   +.-+..|..++..|+|.+|+..|++|+.+-+..    ..+.+.++.||-..|+.
T Consensus        51 g~~~~A~~~~~~al--~l~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~  121 (259)
T d1xnfa_          51 GLRALARNDFSQAL--AIRPDMP---EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAHLNRGIALYYGGRD  121 (259)
T ss_dssp             TCHHHHHHHHHHHH--HHCCCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----THHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHhh--ccCCCCH---HHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh----hhhHHHHHHHHHHHhhH
Confidence            34566777787655  5566543   335678999999999999999999999987654    46788999999999999


Q ss_pred             HHHHHHHHHHh-cCCCH
Q 013954          332 KEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       332 ~EAiaLYkkL~-sHP~~  347 (433)
                      ++|+..|++.. ..|+.
T Consensus       122 ~~A~~~~~~al~~~p~~  138 (259)
T d1xnfa_         122 KLAQDDLLAFYQDDPND  138 (259)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhhcccc
Confidence            99999999985 57753

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.0049  Score=51.41  Aligned_cols=90  Identities=11%  Similarity=0.034  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccc------------hhHHHHHHH
Q 013954          254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE------------LHGLAALQW  321 (433)
Q Consensus       254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~------------LGGeaqLwL  321 (433)
                      ..+.+..|.+-+  .+||..-   ..-+..|..++..|+|.+|+..|++|+..+..+..            ..+++...+
T Consensus        52 ~~~A~~~~~kAl--~ldp~~~---~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~  126 (192)
T d1hh8a_          52 MTEAEKAFTRSI--NRDKHLA---VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI  126 (192)
T ss_dssp             HHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred             chhHHHHHHHHH--HHhhhhh---hhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHH
Confidence            344555555543  4455442   23455677777777777777777777765443322            125666677


Q ss_pred             HHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013954          322 SICQDSLHRPKEARIMYEKLQ-SHPNAL  348 (433)
Q Consensus       322 AiAydA~GR~~EAiaLYkkL~-sHP~~e  348 (433)
                      ++||..+|+.++|+..|++-. .||...
T Consensus       127 a~~~~~~~~~~~A~~~l~~A~~~~~~~~  154 (192)
T d1hh8a_         127 AFMYAKKEEWKKAEEQLALATSMKSEPR  154 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCcc
Confidence            777777777777777777654 456543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.79  E-value=0.022  Score=45.91  Aligned_cols=71  Identities=10%  Similarity=0.023  Sum_probs=57.5

Q ss_pred             HHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC-HHHHHHHHHH
Q 013954          282 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN-ALVSKRARQF  356 (433)
Q Consensus       282 ~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~-~eVrKQAkrL  356 (433)
                      ..|..++..|+|.+|+.++++|+.+-|.+    ..+.++++.||..+|+.++|+..|++.. -+|+ .++.+.-..+
T Consensus        69 Nla~~~~~l~~~~~Ai~~~~~al~l~p~~----~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  141 (168)
T d1kt1a1          69 NLAMCYLKLREYTKAVECCDKALGLDSAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC  141 (168)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHhhhcccchhhhhhhhhcccch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            36888999999999999999999986544    4788899999999999999999999996 4654 4444433333

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.76  E-value=0.0013  Score=50.56  Aligned_cols=85  Identities=11%  Similarity=-0.040  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh
Q 013954          248 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  327 (433)
Q Consensus       248 aaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  327 (433)
                      ..+..+..+.+..|++-+  .++|..   .+.-+..|..++..|++.+|+.+|++|+++-|..    .++-+-|+.||..
T Consensus        26 ~~~~g~~~~A~~~~~~al--~~~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~la~~y~~   96 (112)
T d1hxia_          26 MLKLANLAEAALAFEAVC--QKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTN   96 (112)
T ss_dssp             HHHTTCHHHHHHHHHHHH--HHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHhhhc--cccccc---chhhhhhhhhhhhhhhHHHhhccccccccccccc----ccchHHHHHHHHH
Confidence            445556777777787654  556654   3446778999999999999999999999998664    4677889999999


Q ss_pred             cCChHHHHHHHHHH
Q 013954          328 LHRPKEARIMYEKL  341 (433)
Q Consensus       328 ~GR~~EAiaLYkkL  341 (433)
                      .|+.++|+..+++.
T Consensus        97 ~g~~~~A~~~l~~~  110 (112)
T d1hxia_          97 EHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999999885

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0038  Score=50.98  Aligned_cols=95  Identities=13%  Similarity=0.081  Sum_probs=68.8

Q ss_pred             HHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHHHHHHHhhH
Q 013954          282 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSKRARQFMFS  359 (433)
Q Consensus       282 ~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkrLlyi  359 (433)
                      ..|..++..|+|.+|+.+|++|+.+-|.++    .+..+++.||..+|+.++|+..|++.. -+| |+.+...-.++.-.
T Consensus        67 nla~~y~k~~~~~~A~~~~~~al~~~p~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          67 NLAMCHLKLQAFSAAIESCNKALELDSNNE----KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcccccchhhhhhhccccch----hhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            468889999999999999999999976654    467889999999999999999999985 577 55655544333322


Q ss_pred             HHHHHhhhhcccCCCCcchHHHHHHhhc
Q 013954          360 FQAMEMMKVRSSSDKNTDYRNFFEAFVE  387 (433)
Q Consensus       360 LEAp~llKv~~~~~~~t~Yd~Yf~af~~  387 (433)
                      +..-.       --...-|...|+...+
T Consensus       143 ~~~~~-------~~e~~~~~~~f~~~~~  163 (170)
T d1p5qa1         143 IRRQL-------AREKKLYANMFERLAE  163 (170)
T ss_dssp             HHHHH-------HHHHHHHHHHHHHHHH
T ss_pred             HHHHH-------HHHHHHHHHHHHHHhc
Confidence            22111       0122347777777654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.75  E-value=0.0052  Score=51.71  Aligned_cols=75  Identities=15%  Similarity=0.068  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh-------------------HHHHHHHHHHHHhcCChHHHH
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-------------------GLAALQWSICQDSLHRPKEAR  335 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG-------------------GeaqLwLAiAydA~GR~~EAi  335 (433)
                      .+++..+..|..+++.|++.+|+++|.+|+.+....- +.                   -.+...++.||...|++++|+
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~-l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPV-LDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSST-TGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            6789999999999999999999999999999864321 11                   145567899999999999999


Q ss_pred             HHHHHHh-cCCCHHHH
Q 013954          336 IMYEKLQ-SHPNALVS  350 (433)
Q Consensus       336 aLYkkL~-sHP~~eVr  350 (433)
                      ..|+++. .||.-+--
T Consensus        88 ~~~~~al~~~P~~e~~  103 (179)
T d2ff4a2          88 AELEALTFEHPYREPL  103 (179)
T ss_dssp             HHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHhCCccHHH
Confidence            9999995 79987743

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.0027  Score=51.60  Aligned_cols=60  Identities=7%  Similarity=-0.023  Sum_probs=45.7

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhcccccc-hhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSE-LHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       283 ~Gk~amerGkYreAV~~lEkA~~~v~~~S~-LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .++.++..|++.+|+++|++|++..+.... ....+...++.||...|+.++|+..|++..
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   78 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE   78 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            478888888888888888888887765432 234566667888888888888888888763

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.62  E-value=0.0032  Score=50.72  Aligned_cols=56  Identities=13%  Similarity=-0.009  Sum_probs=39.7

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954          283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       283 ~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  342 (433)
                      .|..++..|+|.+|+..|++|+++-+    -..++.++++.||..+|+.++|+.-|++..
T Consensus        83 la~~~~~~~~~~~Ai~~~~~al~~~p----~~~~a~~~~g~~~~~l~~~~~A~~~~~~al  138 (169)
T d1ihga1          83 IGACKLKMSDWQGAVDSCLEALEIDP----SNTKALYRRAQGWQGLKEYDQALADLKKAQ  138 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccchhhhhhhhhhhhhh----hhhhHHHhHHHHHHHccCHHHHHHHHHHHH
Confidence            46666777777777777777776532    245667777777777777777777777774

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.60  E-value=0.008  Score=50.50  Aligned_cols=76  Identities=9%  Similarity=0.090  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH--------hcCCCHHH
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL--------QSHPNALV  349 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL--------~sHP~~eV  349 (433)
                      +.....+..+...|+|.+|+..+++++..=|..    -.+...|..||-..||+.+|+..|+++        --.|.+++
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~----e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYR----EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            344566999999999999999999999987654    456667899999999999999999996        35788888


Q ss_pred             HHHHHHHh
Q 013954          350 SKRARQFM  357 (433)
Q Consensus       350 rKQAkrLl  357 (433)
                      +.-..+|+
T Consensus       144 ~~l~~~il  151 (179)
T d2ff4a2         144 RALNERIL  151 (179)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776665

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.56  E-value=0.012  Score=47.30  Aligned_cols=33  Identities=12%  Similarity=0.011  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          315 GLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       315 GeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      -.+.+.++.||-.+|+.++||..|++.. -+|+-
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  110 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN  110 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh
Confidence            3455668999999999999999999885 46653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0067  Score=50.55  Aligned_cols=80  Identities=13%  Similarity=0.043  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC
Q 013954          251 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  330 (433)
Q Consensus       251 e~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  330 (433)
                      .....+.|..|.+     +++..   ++-.+..|..++..|+|.+|+..|++|+++=+..    ..+-..+++||...|+
T Consensus        18 ~~d~~~Al~~~~~-----i~~~~---~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~----~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_          18 KKDWKGALDAFSA-----VQDPH---SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             TTCHHHHHHHHHT-----SSSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHh-----cCCCC---HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh----hhhHHHHHHHHHhhcc
Confidence            3446677888874     22322   2346889999999999999999999999865432    5677889999999999


Q ss_pred             hHHHHHHHHHHh
Q 013954          331 PKEARIMYEKLQ  342 (433)
Q Consensus       331 ~~EAiaLYkkL~  342 (433)
                      .++|+..|++..
T Consensus        86 ~~~A~~~~~kAl   97 (192)
T d1hh8a_          86 YDLAIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999863

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.014  Score=49.21  Aligned_cols=90  Identities=13%  Similarity=0.104  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954          250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  329 (433)
Q Consensus       250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  329 (433)
                      +.....+.+..|.+-..  ++|... .....+..|..++..|+|.+|+.+|++++..-+..    .++...++.||...|
T Consensus       148 ~~~~~~~a~~~~~~al~--~~p~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g  220 (323)
T d1fcha_         148 SDSLFLEVKELFLAAVR--LDPTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND----YLLWNKLGATLANGN  220 (323)
T ss_dssp             HHHHHHHHHHHHHHHHH--HSTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred             HhhHHHHHHHHHHHHHH--Hhhccc-ccccchhhHHHHHHHHHHhhhhccccccccccccc----ccchhhhhhcccccc
Confidence            33444455555554432  233211 12334677999999999999999999999876543    466777999999999


Q ss_pred             ChHHHHHHHHHHh-cCCC
Q 013954          330 RPKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       330 R~~EAiaLYkkL~-sHP~  346 (433)
                      +.++|+..|++.. .+|+
T Consensus       221 ~~~~A~~~~~~al~~~p~  238 (323)
T d1fcha_         221 QSEEAVAAYRRALELQPG  238 (323)
T ss_dssp             CHHHHHHHHHHHHHHCTT
T ss_pred             cchhHHHHHHHHHHHhhc
Confidence            9999999999974 5665

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0083  Score=47.56  Aligned_cols=99  Identities=10%  Similarity=0.103  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhC---CchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHH
Q 013954          250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDS---GKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQD  326 (433)
Q Consensus       250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amer---GkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAyd  326 (433)
                      ..+...+....|++-.  .++|..-   +..+.-|..++..   |++++|+..|++++..-+...  +=++-+.|++||.
T Consensus        11 ~~~~l~~Ae~~Y~~aL--~~~p~~~---~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~--~~~~~~~Lg~~y~   83 (122)
T d1nzna_          11 SVEDLLKFEKKFQSEK--AAGSVSK---STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE--QRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHH--HHSCCCH---HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH--hhCCCCH---HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch--HHHHHHHHHHHHH
Confidence            3445556666777655  3444432   3367778888864   456679999999887543322  2246677999999


Q ss_pred             hcCChHHHHHHHHHHh-cCCCHHHHHHHHHHhh
Q 013954          327 SLHRPKEARIMYEKLQ-SHPNALVSKRARQFMF  358 (433)
Q Consensus       327 A~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLly  358 (433)
                      ..|+.++|+..|+++. --|+-.   +|..|+-
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~---~A~~l~~  113 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNN---QAKELER  113 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCH---HHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCH---HHHHHHH
Confidence            9999999999999995 577654   4555543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.046  Score=51.47  Aligned_cols=72  Identities=15%  Similarity=0.098  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh--cCCCHHHHHHHH
Q 013954          279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ--SHPNALVSKRAR  354 (433)
Q Consensus       279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~--sHP~~eVrKQAk  354 (433)
                      ..+..|..+..+|+|.+|+.+|++|+++-|.    .|.+..+|+++|...|+..+|+.-|.+-.  .+|++..+..=.
T Consensus       154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~----~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~  227 (497)
T d1ya0a1         154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS----NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ  227 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            4566799999999999999999999999864    46778999999999999999999998874  688877665533

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.025  Score=45.76  Aligned_cols=89  Identities=13%  Similarity=-0.065  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccc--hhHHHHHHHHHHHHhcCC
Q 013954          253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE--LHGLAALQWSICQDSLHR  330 (433)
Q Consensus       253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~--LGGeaqLwLAiAydA~GR  330 (433)
                      +..+.+.-|++-..+.-+......+...+..|..++..|+|.+|+.+|++|++.......  .-..+.+.++.+|...|+
T Consensus        27 ~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (366)
T d1hz4a_          27 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF  106 (366)
T ss_dssp             CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            344556666655433222223345556677899999999999999999999887654432  334567788999999999


Q ss_pred             hHHHHHHHHHH
Q 013954          331 PKEARIMYEKL  341 (433)
Q Consensus       331 ~~EAiaLYkkL  341 (433)
                      ..+|+..|.+.
T Consensus       107 ~~~a~~~~~~a  117 (366)
T d1hz4a_         107 LQTAWETQEKA  117 (366)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998875

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.50  E-value=0.012  Score=50.77  Aligned_cols=71  Identities=17%  Similarity=0.081  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHh-CCchhhhhhHHHHHHhhccc--ccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          277 CEKALKDGDSLMD-SGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       277 ~eea~~~Gk~ame-rGkYreAV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      +......|..+.. .|+|.+|+++|++|++....  ++..-+.+...++.+|-..|+.++|+.+|+++. .++..
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence            3344455666644 59999999999999876543  345567888999999999999999999999986 44443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=95.04  E-value=0.026  Score=50.37  Aligned_cols=67  Identities=10%  Similarity=0.002  Sum_probs=56.1

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHH
Q 013954          283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRA  353 (433)
Q Consensus       283 ~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQA  353 (433)
                      +++.+|..|+|.+|+..|++++..-|.+..    +...|+.+|-..|+.++|+..|++.. .+|+...--+.
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~~----ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~   69 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPKDAS----LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ   69 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            578999999999999999999999877654    56778888888999999999999995 68876554443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.20  E-value=0.17  Score=43.20  Aligned_cols=89  Identities=18%  Similarity=0.098  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhH---HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHH
Q 013954          276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG---LAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSK  351 (433)
Q Consensus       276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGG---eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrK  351 (433)
                      .+...+..|..+...|+|.+|+.+|+++...-.....+..   .+.+..++||-..|+...|+..+++.. -+|.-.-++
T Consensus       157 ~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sr  236 (290)
T d1qqea_         157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR  236 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred             hhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchH
Confidence            3455677899999999999999999999887655544432   345668899999999999999999985 677655555


Q ss_pred             HHHHHhhHHHHHH
Q 013954          352 RARQFMFSFQAME  364 (433)
Q Consensus       352 QAkrLlyiLEAp~  364 (433)
                      +.+-+.=.++|.+
T Consensus       237 e~~~l~~l~~a~~  249 (290)
T d1qqea_         237 ESNFLKSLIDAVN  249 (290)
T ss_dssp             -HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4443333445554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.03  E-value=0.16  Score=40.29  Aligned_cols=96  Identities=13%  Similarity=0.076  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHh----------CCchhhhhhHHHHHHhhcccccchhHHHH
Q 013954          249 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMD----------SGKLKEALPFYEKVMNKMVFKSELHGLAA  318 (433)
Q Consensus       249 aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~ame----------rGkYreAV~~lEkA~~~v~~~S~LGGeaq  318 (433)
                      +|-.+..+.+..|.+-+  .+||..-..   .+..|..++.          .+++.+|+.+|++|+++=|..    .++-
T Consensus         8 ~r~~~fe~A~~~~e~al--~~~P~~~~~---~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~----~~a~   78 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTY--KSNPLDADN---LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK----DEAV   78 (145)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHCTTCHHH---HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC----HHHH
T ss_pred             HHHccHHHHHHHHHHHH--hhCCcchHH---HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh----hHHH
Confidence            44556777788887654  667775433   4556666654          355678999999999876554    4466


Q ss_pred             HHHHHHHHhcCC-----------hHHHHHHHHHHh-cCCCHHHHHHH
Q 013954          319 LQWSICQDSLHR-----------PKEARIMYEKLQ-SHPNALVSKRA  353 (433)
Q Consensus       319 LwLAiAydA~GR-----------~~EAiaLYkkL~-sHP~~eVrKQA  353 (433)
                      .+|++||...|+           .++|+..|++.. -+|+-.+-+++
T Consensus        79 ~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~  125 (145)
T d1zu2a1          79 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS  125 (145)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHH
Confidence            778888877664           689999999985 78887654443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=92.26  E-value=0.26  Score=40.64  Aligned_cols=59  Identities=15%  Similarity=0.192  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHh
Q 013954          278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQ  342 (433)
Q Consensus       278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~  342 (433)
                      +..+..|..++.+|+|.+|+.+|++|.+.   +   ..+++..|+++|..    ......|+..|++..
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~---g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~   65 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL---K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC   65 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc
Confidence            46789999999999999999999999764   1   35788889999987    456788888888875

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.15  E-value=0.15  Score=44.81  Aligned_cols=64  Identities=8%  Similarity=-0.081  Sum_probs=51.9

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954          280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  347 (433)
Q Consensus       280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  347 (433)
                      -+..|..++..|+|.+|+.+|++|+++-+.+.    .+-..++.||..+|+.++|+..|++.. .||+-
T Consensus       115 ~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~----~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n  179 (315)
T d2h6fa1         115 WHHRRVLVEWLRDPSQELEFIADILNQDAKNY----HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN  179 (315)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHHHhHHHHhhccHHHHHHHHhhhhhhhhcch----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc
Confidence            44458888889999999999999988766653    456668899999999999999999985 68863

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.95  E-value=0.18  Score=44.27  Aligned_cols=86  Identities=9%  Similarity=0.084  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCc-hhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC
Q 013954          252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGK-LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  330 (433)
Q Consensus       252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGk-YreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  330 (433)
                      ++..+.|..|.+-.  +++|.....   -+-.|..+...|+ |.+|+.+|++|++.-+..    ..+-..++.+|..+|+
T Consensus        57 e~~~~Al~~~~~ai--~lnP~~~~a---~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~----~~a~~~~~~~~~~l~~  127 (315)
T d2h6fa1          57 ERSERAFKLTRDAI--ELNAANYTV---WHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN----YQVWHHRRVLVEWLRD  127 (315)
T ss_dssp             CCCHHHHHHHHHHH--HHCTTCHHH---HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTC
T ss_pred             CchHHHHHHHHHHH--HHCCCChHH---HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh----hhHHHHHhHHHHhhcc
Confidence            34455666665433  556665544   3556888888876 999999999999887654    4567778999999999


Q ss_pred             hHHHHHHHHHHh-cCCC
Q 013954          331 PKEARIMYEKLQ-SHPN  346 (433)
Q Consensus       331 ~~EAiaLYkkL~-sHP~  346 (433)
                      .++|+..|++.. .+|.
T Consensus       128 ~~eAl~~~~kal~~dp~  144 (315)
T d2h6fa1         128 PSQELEFIADILNQDAK  144 (315)
T ss_dssp             CTTHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhhhhhhhhc
Confidence            999999999985 5665

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.44  E-value=0.2  Score=39.71  Aligned_cols=78  Identities=12%  Similarity=0.187  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCc-----------hhhhhhHHHHHHhhcccccchhHHHH
Q 013954          250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGK-----------LKEALPFYEKVMNKMVFKSELHGLAA  318 (433)
Q Consensus       250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGk-----------YreAV~~lEkA~~~v~~~S~LGGeaq  318 (433)
                      ..+...+.+..|++-+  .++|..-..   .+..|..+++.|+           |.+|+++|++|++.-|-+.       
T Consensus        53 ~~~~~~~Ai~~~~kAl--~l~P~~~~a---~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~-------  120 (145)
T d1zu2a1          53 AKQMIQEAITKFEEAL--LIDPKKDEA---VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-------  120 (145)
T ss_dssp             HHHHHHHHHHHHHHHH--HHCTTCHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-------
T ss_pred             HHHHHHHHHHHHHHHH--HhcchhhHH---HhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHH-------
Confidence            4456778888888766  777876443   5667888877765           7899999999998887653       


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhc
Q 013954          319 LQWSICQDSLHRPKEARIMYEKLQS  343 (433)
Q Consensus       319 LwLAiAydA~GR~~EAiaLYkkL~s  343 (433)
                          +++.++++...|..+|..+.+
T Consensus       121 ----~~~~~L~~~~ka~~~~~e~~k  141 (145)
T d1zu2a1         121 ----HYLKSLEMTAKAPQLHAEAYK  141 (145)
T ss_dssp             ----HHHHHHHHHHTHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHH
Confidence                344445555566666666543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.39  E-value=0.55  Score=36.60  Aligned_cols=61  Identities=8%  Similarity=0.088  Sum_probs=48.1

Q ss_pred             HHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh---HHHHHHHHHHhc-CCCHH
Q 013954          284 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP---KEARIMYEKLQS-HPNAL  348 (433)
Q Consensus       284 Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~---~EAiaLYkkL~s-HP~~e  348 (433)
                      ...++..+.|.+|.+.|++|+..-+..    -++.+.+|.||-..++.   ++||.+|+++.. .|++.
T Consensus         6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~----~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~   70 (122)
T d1nzna_           6 LNELVSVEDLLKFEKKFQSEKAAGSVS----KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE   70 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch
Confidence            456778889999999999999976553    46889999999665554   569999999864 56554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=89.13  E-value=0.43  Score=42.14  Aligned_cols=81  Identities=15%  Similarity=0.003  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh
Q 013954          248 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  327 (433)
Q Consensus       248 aaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  327 (433)
                      +.++-+..+.++.|++-+  ..+|..-   +..+..|+.++..|++.+|+..|+.++++-|....    +...++.++.+
T Consensus         6 aL~~G~l~eAl~~l~~al--~~~P~d~---~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~----~~~~l~~ll~a   76 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAI--KASPKDA---SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP----GASQLRHLVKA   76 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHH--HTCTTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH----HHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHH--HHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHh
Confidence            344456777888887654  4455543   33778899999999999999999999988764432    22233333444


Q ss_pred             cCChHHHHHH
Q 013954          328 LHRPKEARIM  337 (433)
Q Consensus       328 ~GR~~EAiaL  337 (433)
                      .++++++.+-
T Consensus        77 ~~~~~~a~~~   86 (264)
T d1zbpa1          77 AQARKDFAQG   86 (264)
T ss_dssp             HHHHHHHTTS
T ss_pred             ccccHHHHHH
Confidence            4444444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.96  E-value=0.67  Score=36.04  Aligned_cols=65  Identities=23%  Similarity=0.302  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHH
Q 013954          252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQ  325 (433)
Q Consensus       252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAy  325 (433)
                      .+..+.+..|++-+  .++|..-   +..+..|..++..|+|.+|+..|++++.+-+.+.    .+...+..|.
T Consensus        58 ~~~~~A~~~~~kal--~~~p~~~---~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~----~~~~~l~~~~  122 (159)
T d1a17a_          58 ECYGYALGDATRAI--ELDKKYI---KGYYRRAASNMALGKFRAALRDYETVVKVKPHDK----DAKMKYQECN  122 (159)
T ss_dssp             TCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHH
T ss_pred             cccchHHHHHHHHH--HHcccch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHH
Confidence            34555666676554  4556543   3367789999999999999999999999876654    3444455543

>d2ijqa1 a.246.2.1 (A:14-158) Hypothetical protein rrnAC1037 {Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: Hyaluronidase domain-like
superfamily: TTHA0068-like
family: TTHA0068-like
domain: Hypothetical protein rrnAC1037
species: Haloarcula marismortui [TaxId: 2238]

Probab=85.72  E-value=1  Score=37.96  Aligned_cols=68  Identities=16%  Similarity=0.221  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc----chhHHHHHHHHHHH-HhcCChHHHHHHHHHHh
Q 013954          275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS----ELHGLAALQWSICQ-DSLHRPKEARIMYEKLQ  342 (433)
Q Consensus       275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S----~LGGeaqLwLAiAy-dA~GR~~EAiaLYkkL~  342 (433)
                      +..+.+|..|..+|++|+|=+|=+.||.+-..++.++    -+-|.+|+--|..+ -.-|...=|..|+++-.
T Consensus        15 ~t~~~a~~~Gi~lfN~g~y~eaHE~lEe~W~~~~~~~~er~~~QGLIQ~Aaa~~hh~~~gN~~GA~~l~~~al   87 (145)
T d2ijqa1          15 ETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL   87 (145)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            5677899999999999999999999999987766544    36788887666553 68899999999998753

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.01  E-value=0.7  Score=39.39  Aligned_cols=58  Identities=14%  Similarity=0.055  Sum_probs=47.0

Q ss_pred             HHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc-CC
Q 013954          284 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS-HP  345 (433)
Q Consensus       284 Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s-HP  345 (433)
                      |......|++.+|+..|.++...-+.    .-.+-+.++.||...|+.++|+..|+++.. -|
T Consensus       249 ~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP  307 (334)
T d1dcea1         249 VEKSTVLQSELESCKELQELEPENKW----CLLTIILLMRALDPLLYEKETLQYFSTLKAVDP  307 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhCch----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence            56667778999999999988766543    345677799999999999999999999964 55