Citrus Sinensis ID: 013958

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
Protein Sequence
MSRQQNQTQNFFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSATPVPTWRLMRTTPSSVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLWEMNEMPSPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVSEVETRSRAQTPSGSTVGVKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRKRTQFCKSTNQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHcccccEEEccccccccccHHHHHcccEEEEEEEEccccccccccccccEEcccccccHHHHHcccccccccccccccccccccHHcccccccccHHHHHHHHHHHHcccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccHHHHHHHHHHHHccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
msrqqnqtqnffpgkirkrgcsssassTSSIVQNYRFKRAILIgkrgggggsatpvptwrlmrttpssvLRAIDsqseyggfvNKAKQHQLQLQQQHQHSQQPVSARKLAATLWEmnempspklretsggggyderRIRREARARERERERVTRslhsgslpphlsdpshspvsevetrsraqtpsgstvgvkTRLKDVSNALTTSKELLKIINRmwgqedrpsssmSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRnqkgkrkrtqfckstnq
Flexible Loop (DISEMBL)
msrqqnqtqnffpgkirkrgcsssasstssivqnYRFKRAIligkrgggggsatpvptwrlmrtTPSSVLRAIDSQSEYGGFVNKAKQHQLQLQQqhqhsqqpVSARKLAATLWEMnempspklretsggggyderrirreararererervtrslhsgslpphlsdpshsPVSEVEtrsraqtpsgstvgvktrlkdvsnalttskELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESiageleverKLRRRFESLNKKLGKELAETKHSLLkavkdldtekraRVVIEQVCDElardinddkseveeLKRESAialeevekereMIQVADVLREERAQIKLSeakyqleeknaAVDKLRSQLEafsrnqkgkrkrtqfckstnq
Low Complexity Region (SEG)
MSRQQNQTQNFFPGKIRKRGCsssasstssIVQNYRFKRAILIGKRgggggSATPVPTWRLMRTTPSSVLRAIDSQSEYGGFVNKAKqhqlqlqqqhqhsqqPVSARKLAATLWEMNEMPSPKLRETSGGGGYDerrirreararerererVTRslhsgslpphlsdpshspvsEVETRSRAQTPSGSTVGVKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRKRTQFCKSTNQ
Disordered region (IsUnstruct)
************************************F**AIL******************************************************************************************************************************************************************TSKELLKIINRMW****************************************ISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEV*************************LLKAVKDLDTEKRARVVIEQVCDELA*****************************************************************************************
Disordered Region (DISOPRED)
************************************************************************************************************LAATLW*************************************************************************************************II***********************LER****************************************************************************************************************************************QVADVL****************************************************
Disordered Region (DISEMBL)
*********NFFPGKI**************IVQNYRFKRAILIGKRGGGGGSATPVPTWRLMRTTPSSVLRAIDSQSEYGGFVNK*********************RKLAATLWEMNEMPSPK**********DERRIRRE*************************************************GVKTRLKDVSNALTTSKELLKIINRMWG***********VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFS******************
Disordered Region (DISPRO)
*******TQNFFPGKIRK***********SIVQNYRFKRAILIGKRG***GSATPV***********************************************V***K***TLWEMNEMP***************************************************************************L*DVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQ***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRQQNQTQNFFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSATPVPTWRLMRTTPSSVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLWEMNEMPSPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVSEVETRSRAQTPSGSTVGVKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLxxxxxxxxxxxxxxxxxxxxxxxxxxxxISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIQVADVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQKGKRKRTQFCKSTNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	433	2.2.26 [Sep-21-2011]
Q66GQ2	623	Uncharacterized protein A	no	no	0.644	0.447	0.331	3e-30

>sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2

 Score =  133 bits (334), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 176/305 (57%), Gaps = 26/305 (8%)

Query: 120 PSPKLRETSGGGGYDERRIRRE-ARARERERERVTRSLHSGSLPPHLSDPSHSPVSEVET 178
           PSP  +  S G       +RR+  +   +  + + R+ H+  L P +S  S+    EV T
Sbjct: 118 PSPDHQPDSAGS------LRRQIGQMLIKHHQSIDRNNHA--LQP-VSPASYGSSLEVTT 168

Query: 179 RSRAQTPSGSTVGVKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELE 238
            ++A TPS S        ++    L TS ELLK++NR+W  E++  S++SL+ AL  E+ 
Sbjct: 169 YNKAVTPSSSLEFRGRPSREPHYNLKTSTELLKVLNRIWSLEEQHVSNISLIKALKTEVA 228

Query: 239 RARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLR 298
            +R+++ +L++ Q++D+ E+  ++K  AEEK   KNKE E + +A++S+   LE ERKLR
Sbjct: 229 HSRVRIKELLRYQQADRHELDSVVKQLAEEKLLSKNKEVERMSSAVQSVRKALEDERKLR 288

Query: 299 RRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELK 358
           +R ESL++K+ +EL+E K SL   VK+L+   ++  ++E +CDE A+ I   + E+  LK
Sbjct: 289 KRSESLHRKMARELSEVKSSLSNCVKELERGSKSNKMMELLCDEFAKGIKSYEEEIHGLK 348

Query: 359 RESAIALEEVEK--------EREMIQVADVLREERAQIKLSEAKYQLEEKNAAV-DKLRS 409
           +++      ++K        ++ ++ +A+   +ER Q++L E    L  KN +V DKL  
Sbjct: 349 KKN------LDKDWAGRGGGDQLVLHIAESWLDERMQMRL-EGGDTLNGKNRSVLDKLEV 401

Query: 410 QLEAF 414
           ++E F
Sbjct: 402 EIETF 406

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
255579349	680	conserved hypothetical protein [Ricinus	0.914	0.582	0.694	1e-162
297740164	583	unnamed protein product [Vitis vinifera]	0.905	0.672	0.645	1e-154
359482028	693	PREDICTED: uncharacterized protein At5g4	0.905	0.565	0.645	1e-153
224091941	667	predicted protein [Populus trichocarpa]	0.916	0.595	0.663	1e-147
356570881	666	PREDICTED: uncharacterized protein At5g4	0.879	0.572	0.630	1e-139
449437432	668	PREDICTED: uncharacterized protein At5g4	0.926	0.600	0.598	1e-136
15724288	622	AT3g11590/F24K9_26 [Arabidopsis thaliana	0.930	0.647	0.610	1e-135
18399293	622	uncharacterized protein [Arabidopsis tha	0.930	0.647	0.610	1e-135
297829712	621	hypothetical protein ARALYDRAFT_478504 [	0.928	0.647	0.608	1e-135
356505402	660	PREDICTED: uncharacterized protein At5g4	0.868	0.569	0.633	1e-131

>gi|255579349|ref|XP_002530519.1| conserved hypothetical protein [Ricinus communis] gi|223529923|gb|EEF31851.1| conserved hypothetical protein [Ricinus communis]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 320/461 (69%), Positives = 357/461 (77%), Gaps = 65/461 (14%)

Query: 4   QQNQT----QNFFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSATPVPTW 59
           +QNQ+    +   PGKIRKRGCSSSASS+SSI+QNYRFKRAIL+G RGG   S TPVPTW
Sbjct: 3   RQNQSRASVEELLPGKIRKRGCSSSASSSSSIIQNYRFKRAILVGNRGG---STTPVPTW 59

Query: 60  RLMRTT--PSSVLRAIDS----QSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATL 113
           RLM TT  PSS LRA DS     S+ GG V    + +L LQQQ      PVSARKLAATL
Sbjct: 60  RLMGTTRTPSSALRARDSPKYAASQNGGIV----KGKLMLQQQQA---APVSARKLAATL 112

Query: 114 WEMNEMPSPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPV 173
           WE+NEMPSPK++E  G    +ERR+RRE + RER      RS+HSGSLPPHLSDPSHSPV
Sbjct: 113 WELNEMPSPKMKEVVGS---EERRLRREGKGRERAG--AARSVHSGSLPPHLSDPSHSPV 167

Query: 174 SE----------------------------------------VETRSRAQTPSGSTVGVK 193
           SE                                        +ET SRAQTPSGSTVG K
Sbjct: 168 SERMDRSGTGSRRRSSSISQRLRLTDYNVGAFDAISNASLLEIETSSRAQTPSGSTVGAK 227

Query: 194 TRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRS 253
           TRLKDVSNALTTSKELLKIINR+WG EDRPSSSMSL+SALHAELERARLQVN LIQEQRS
Sbjct: 228 TRLKDVSNALTTSKELLKIINRVWGNEDRPSSSMSLISALHAELERARLQVNHLIQEQRS 287

Query: 254 DQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELA 313
           DQ+EI+YL+KCFAEEKA+WKNKE++VVEAAIESIAGELEVE+KLRRRFESLNKKLGKELA
Sbjct: 288 DQNEINYLLKCFAEEKASWKNKEQKVVEAAIESIAGELEVEKKLRRRFESLNKKLGKELA 347

Query: 314 ETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKERE 373
           ETK SL+KAVK+L+ EKR RVV+EQVCDELARD+++DK+EVEELKRES     EVEKERE
Sbjct: 348 ETKTSLMKAVKELENEKRTRVVMEQVCDELARDVDEDKAEVEELKRESVKLCSEVEKERE 407

Query: 374 MIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAF 414
           M+Q+ADVLREER Q+KLSEAKY LEEKNAAVDKLRSQLEAF
Sbjct: 408 MMQLADVLREERVQMKLSEAKYLLEEKNAAVDKLRSQLEAF 448

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740164|emb|CBI30346.3| unnamed protein product [Vitis vinifera]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 300/465 (64%), Positives = 349/465 (75%), Gaps = 73/465 (15%)

Query: 1   MSRQQNQTQNFFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSATPVPTWR 60
           M RQ +  Q   PGKIRKRGCSSS+S++S ++Q YRFKRAIL+GKRGG   S+TPVPTWR
Sbjct: 1   MPRQNHGIQGLIPGKIRKRGCSSSSSTSS-VLQKYRFKRAILVGKRGG---SSTPVPTWR 56

Query: 61  LMRT-TPSSVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLWEMNEM 119
           LM + +P+S +RA++S    GG   KAKQ              PVSARKLAATLWEMNEM
Sbjct: 57  LMNSRSPASAMRAMESPRSMGG--GKAKQ-------------APVSARKLAATLWEMNEM 101

Query: 120 PSPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVSE---- 175
           PSP+          DE+R +RE R RER    V RSLHSGSLPPHLSDPSHSPVSE    
Sbjct: 102 PSPR--------ADDEKRSKREVRGRER----VARSLHSGSLPPHLSDPSHSPVSERIDR 149

Query: 176 -------------------------------------VETRSRAQTPSGSTVGVKTRLKD 198
                                                +E RSR QTPSGSTVGV+TRLKD
Sbjct: 150 SGTSSYRRKTSSISQRLRLADHNVGVMDSFSSASLMEIEIRSRGQTPSGSTVGVRTRLKD 209

Query: 199 VSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEI 258
           VSNALTTSKELLKII+R+WG ED+PSSSMSL+SALHAELERARL +NQLIQEQRSDQSEI
Sbjct: 210 VSNALTTSKELLKIISRIWGHEDQPSSSMSLISALHAELERARLHINQLIQEQRSDQSEI 269

Query: 259 SYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHS 318
           +YLMKCFAEEKAAWK+KE++V+EAAIESIAGELEVERKLRRRFESLNKKLG+ELAETK S
Sbjct: 270 NYLMKCFAEEKAAWKSKEQQVIEAAIESIAGELEVERKLRRRFESLNKKLGRELAETKTS 329

Query: 319 LLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVA 378
           L+KAVK+L+ EKRAR ++EQVCDEL +D+ +DK EVEE+KRESA   EE EKERE++Q+A
Sbjct: 330 LIKAVKELECEKRAREIMEQVCDELTQDVGEDKDEVEEIKRESAKVREEAEKEREILQLA 389

Query: 379 DVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRK 423
           DVLREERAQ K+SEAKYQ EEKNA V+KL+++LE F R++K K K
Sbjct: 390 DVLREERAQSKISEAKYQFEEKNAVVEKLKNELEVFMRSKKAKEK 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482028|ref|XP_002275906.2| PREDICTED: uncharacterized protein At5g41620-like [Vitis vinifera]

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 300/465 (64%), Positives = 349/465 (75%), Gaps = 73/465 (15%)

Query: 1   MSRQQNQTQNFFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSATPVPTWR 60
           M RQ +  Q   PGKIRKRGCSSS+S++S ++Q YRFKRAIL+GKRGG   S+TPVPTWR
Sbjct: 1   MPRQNHGIQGLIPGKIRKRGCSSSSSTSS-VLQKYRFKRAILVGKRGG---SSTPVPTWR 56

Query: 61  LMRT-TPSSVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLWEMNEM 119
           LM + +P+S +RA++S    GG   KAKQ              PVSARKLAATLWEMNEM
Sbjct: 57  LMNSRSPASAMRAMESPRSMGG--GKAKQ-------------APVSARKLAATLWEMNEM 101

Query: 120 PSPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVSE---- 175
           PSP+          DE+R +RE R RER    V RSLHSGSLPPHLSDPSHSPVSE    
Sbjct: 102 PSPR--------ADDEKRSKREVRGRER----VARSLHSGSLPPHLSDPSHSPVSERIDR 149

Query: 176 -------------------------------------VETRSRAQTPSGSTVGVKTRLKD 198
                                                +E RSR QTPSGSTVGV+TRLKD
Sbjct: 150 SGTSSYRRKTSSISQRLRLADHNVGVMDSFSSASLMEIEIRSRGQTPSGSTVGVRTRLKD 209

Query: 199 VSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEI 258
           VSNALTTSKELLKII+R+WG ED+PSSSMSL+SALHAELERARL +NQLIQEQRSDQSEI
Sbjct: 210 VSNALTTSKELLKIISRIWGHEDQPSSSMSLISALHAELERARLHINQLIQEQRSDQSEI 269

Query: 259 SYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHS 318
           +YLMKCFAEEKAAWK+KE++V+EAAIESIAGELEVERKLRRRFESLNKKLG+ELAETK S
Sbjct: 270 NYLMKCFAEEKAAWKSKEQQVIEAAIESIAGELEVERKLRRRFESLNKKLGRELAETKTS 329

Query: 319 LLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVA 378
           L+KAVK+L+ EKRAR ++EQVCDEL +D+ +DK EVEE+KRESA   EE EKERE++Q+A
Sbjct: 330 LIKAVKELECEKRAREIMEQVCDELTQDVGEDKDEVEEIKRESAKVREEAEKEREILQLA 389

Query: 379 DVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRK 423
           DVLREERAQ K+SEAKYQ EEKNA V+KL+++LE F R++K K K
Sbjct: 390 DVLREERAQSKISEAKYQFEEKNAVVEKLKNELEVFMRSKKAKEK 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091941|ref|XP_002309409.1| predicted protein [Populus trichocarpa] gi|222855385|gb|EEE92932.1| predicted protein [Populus trichocarpa]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 310/467 (66%), Positives = 351/467 (75%), Gaps = 70/467 (14%)

Query: 1   MSRQQNQT--QNFFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSATPVPT 58
           M RQ+     +   PGKIRKR CSSSASS+SSI+QNYRFKRAIL+GKRGG   S+TPVPT
Sbjct: 1   MPRQKGSATMEELLPGKIRKRVCSSSASSSSSIIQNYRFKRAILVGKRGG---SSTPVPT 57

Query: 59  WRLM-RTTPSSVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLWEMN 117
           W+LM + TPSS LRA++S  +      KAKQ Q            PVSARKLAATLWEMN
Sbjct: 58  WKLMGKRTPSSTLRALESSPK--SLNGKAKQQQ-----------APVSARKLAATLWEMN 104

Query: 118 EMPSPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVSE-- 175
           EMPSP+++E           I  E R R+  R R  R +HSGSLPPHLSDPSHSPVSE  
Sbjct: 105 EMPSPQMKE----------EIVEERRLRKEGRGRERRPVHSGSLPPHLSDPSHSPVSERI 154

Query: 176 ---------------------------------------VETRSRAQTPSGSTVGVKTRL 196
                                                  +ETRS+AQTPSGSTVGVK RL
Sbjct: 155 DRSGTGSCHRRTSSISQKLRLMDQSIGAFDSVSNASLMEIETRSQAQTPSGSTVGVKPRL 214

Query: 197 KDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQS 256
           KDVSNALTTSKELLKIINR+WG EDRPSSS+SL+SALHAELERARLQVN  IQEQ SDQ+
Sbjct: 215 KDVSNALTTSKELLKIINRVWGNEDRPSSSLSLISALHAELERARLQVNHFIQEQCSDQN 274

Query: 257 EISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETK 316
           EI+YLMKCFAEEKAAWKNKE++VVEAAIESIAGEL+VE+KLRRRFESLNKKLGKELAETK
Sbjct: 275 EINYLMKCFAEEKAAWKNKEQKVVEAAIESIAGELDVEKKLRRRFESLNKKLGKELAETK 334

Query: 317 HSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQ 376
            SLLKAVK+L++EKRARVV+++VCDELARDI DDK+EVEELKRESA   EEVEKEREM+Q
Sbjct: 335 ASLLKAVKELESEKRARVVMQKVCDELARDIGDDKAEVEELKRESAKLCEEVEKEREMMQ 394

Query: 377 VADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRK 423
           +ADVLREER  +KLSEAKYQLEEKNAAVDKL++QLEAF   ++ K K
Sbjct: 395 LADVLREERVHMKLSEAKYQLEEKNAAVDKLQNQLEAFLGTKRTKEK 441

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570881|ref|XP_003553612.1| PREDICTED: uncharacterized protein At5g41620-like [Glycine max]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 287/455 (63%), Positives = 328/455 (72%), Gaps = 74/455 (16%)

Query: 1   MSRQQNQTQNFFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSATPVPTWR 60
           M  Q   T +  PGKIRKRGCSSSASS+SS++ NYRFKR IL+GKRGG   S+TPVPTW+
Sbjct: 1   MLSQNRSTMDMIPGKIRKRGCSSSASSSSSVLHNYRFKRTILVGKRGG---SSTPVPTWK 57

Query: 61  LMRTTPSSVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLWEMNEMP 120
           LM  +  S LRA+            A       Q  ++  Q PVSARKLAATLWEMNE+P
Sbjct: 58  LM--SSRSPLRAL------------ASPKYPPSQTANKSLQAPVSARKLAATLWEMNEIP 103

Query: 121 SPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVSE----- 175
           SP +R                ++   R RERV RS+ SGSLPPHLSDPSHSPVSE     
Sbjct: 104 SPSVR----------------SKKELRTRERVPRSMRSGSLPPHLSDPSHSPVSERMDRS 147

Query: 176 ------------------------------------VETRSRAQTPSGSTVGVKTRLKDV 199
                                               +ETRSRAQTP+ S VGVK RLKDV
Sbjct: 148 GTGSRQKRTPSISHRARITEHHVGPLDSLSNASLMEIETRSRAQTPASSAVGVKGRLKDV 207

Query: 200 SNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEIS 259
           SNALTTSKELLKIINRMWG EDRPSSSMSL+SALH ELERARLQVNQLIQEQRSDQ+EI+
Sbjct: 208 SNALTTSKELLKIINRMWGHEDRPSSSMSLISALHTELERARLQVNQLIQEQRSDQNEIN 267

Query: 260 YLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSL 319
           YLMKCFAEEKAAWKNKE+E+VE AIESIAGEL+VERKLRR+ ESLNKKLG+ELA+TK SL
Sbjct: 268 YLMKCFAEEKAAWKNKEQEIVEVAIESIAGELDVERKLRRQLESLNKKLGRELADTKASL 327

Query: 320 LKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVAD 379
           LK VK+L++EKRAR +IEQVCDELARD ++DKSE+E+ KR S    EEVEKE+E++Q+ D
Sbjct: 328 LKVVKELESEKRAREIIEQVCDELARDADEDKSEIEKQKRVSTKVCEEVEKEKEIMQLTD 387

Query: 380 VLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAF 414
            LREERAQ KLS+AKYQLEEKNAAVDKLR+QLE F
Sbjct: 388 RLREERAQKKLSDAKYQLEEKNAAVDKLRNQLEVF 422

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437432|ref|XP_004136496.1| PREDICTED: uncharacterized protein At5g41620-like [Cucumis sativus]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 276/461 (59%), Positives = 331/461 (71%), Gaps = 60/461 (13%)

Query: 4   QQNQTQNFFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSATPVPTWRLMR 63
           +QN      PGKIRKRGCSSSASS+SSI+ NYRFKRAIL+GKR G   S+TP+P+WRLM 
Sbjct: 3   RQNLAAELIPGKIRKRGCSSSASSSSSILHNYRFKRAILVGKRAG---SSTPLPSWRLMS 59

Query: 64  TTPSSVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLWEMNEMPSPK 123
           +   S   A  S         ++  ++L      +  Q PVSARKLAATLWEMNE+PS +
Sbjct: 60  SRSRSPASAFRS--------TESPNYELYQCGSGRSKQAPVSARKLAATLWEMNELPSTR 111

Query: 124 LRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVSE-------- 175
           ++E+      DER+ R+E +ARE+     TRS+HSGSLPPHLSDPSHSPVSE        
Sbjct: 112 VKESLA---LDERKSRKEMKAREK----TTRSVHSGSLPPHLSDPSHSPVSERGDRSGTG 164

Query: 176 ---------------------------------VETRSRAQTPSGSTVGVKTRLKDVSNA 202
                                            +E+RSRA TPS S VGVKTRLKDVSNA
Sbjct: 165 SRCRRTPSMSQRLKLADHGVGVLDSVSNASLMEIESRSRAPTPSASIVGVKTRLKDVSNA 224

Query: 203 LTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLM 262
           LTTSKELLKIINR+WG EDRPS+SMSL+SALHAE+ERARLQ+NQLIQEQR +QS+ISYLM
Sbjct: 225 LTTSKELLKIINRVWGHEDRPSTSMSLISALHAEMERARLQINQLIQEQRYEQSDISYLM 284

Query: 263 KCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKA 322
           +CFAEEK AWK+KE+EVVEAAIES+AGELEVERKLRRRFESLNKKLG+ELAETK SLLK 
Sbjct: 285 RCFAEEKEAWKSKEQEVVEAAIESVAGELEVERKLRRRFESLNKKLGRELAETKSSLLKV 344

Query: 323 VKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLR 382
           VK+L++EKRAR ++EQVCD+LA D+ DDK E+ E +RESA   + V+KEREM ++A  L 
Sbjct: 345 VKELESEKRAREIMEQVCDDLANDVGDDKLELGERQRESAKLCDNVKKEREMKRLAAALH 404

Query: 383 EERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRK 423
           EER     S+ KY LE+KN AVDKLR+QLEAF   ++ K K
Sbjct: 405 EERTHTDASD-KYDLEDKNVAVDKLRNQLEAFLGIKRAKEK 444

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15724288|gb|AAL06537.1|AF412084_1 AT3g11590/F24K9_26 [Arabidopsis thaliana]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 287/470 (61%), Positives = 337/470 (71%), Gaps = 67/470 (14%)

Query: 1   MSRQQNQTQNFFP-GKIRKRGCSSSASSTSSIV-QNYRFKRAILIGKRGGGGGSATPVPT 58
           M RQ    +N    GKIRKRGCSS  SSTSSI+ + YRFKRAI++GKRGG   S TPVPT
Sbjct: 1   MPRQNQSVENLLLLGKIRKRGCSSPTSSTSSILREGYRFKRAIVVGKRGG---STTPVPT 57

Query: 59  WRLMRTTPS----SVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLW 114
           WRLM  +PS      L A  S S + G    +K  ++        +  PVSARKLAATLW
Sbjct: 58  WRLMGRSPSPRASGALHAAASPSSHCG----SKTGKVS-------APAPVSARKLAATLW 106

Query: 115 EMNEMPSPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVS 174
           EMNEMPSP++ E +         IR+  + R         S+HSGSLPPHLSDPSHSPVS
Sbjct: 107 EMNEMPSPRVVEEAAP------MIRKSRKERIAPLPPPRSSVHSGSLPPHLSDPSHSPVS 160

Query: 175 E-----------------------------------------VETRSRAQTPSGSTVGVK 193
           E                                         +ETRSR +TP+GSTVGVK
Sbjct: 161 ERMERSGTGSRQRRASSTVQKLRLGDCNVGARDPINSGSFMDIETRSRVETPTGSTVGVK 220

Query: 194 TRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRS 253
           TRLKD SNALTTSKELLKIINRMWGQ+DRPSSSMSLVSALH+ELERARLQVNQLI E + 
Sbjct: 221 TRLKDCSNALTTSKELLKIINRMWGQDDRPSSSMSLVSALHSELERARLQVNQLIHEHKP 280

Query: 254 DQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELA 313
           + ++ISYLMK FAEEKA WK+ E+EVVEAAIES+AGELEVERKLRRRFESLNKKLGKELA
Sbjct: 281 ENNDISYLMKRFAEEKAVWKSNEQEVVEAAIESVAGELEVERKLRRRFESLNKKLGKELA 340

Query: 314 ETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKERE 373
           ETK +L+KAVK+++ EKRARV++E+VCDELARDI++DK+EVEELKRES    EEVEKERE
Sbjct: 341 ETKSALMKAVKEIENEKRARVMVEKVCDELARDISEDKAEVEELKRESFKVKEEVEKERE 400

Query: 374 MIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRK 423
           M+Q+AD LREER Q+KLSEAK+QLEEKNAAVDKLR+QL+ + + ++ K K
Sbjct: 401 MLQLADALREERVQMKLSEAKHQLEEKNAAVDKLRNQLQTYLKTKRCKEK 450

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399293|ref|NP_566392.1| uncharacterized protein [Arabidopsis thaliana] gi|12322915|gb|AAG51453.1|AC008153_26 unknown protein; 103163-106072 [Arabidopsis thaliana] gi|25090217|gb|AAN72254.1| At3g11590/F24K9_26 [Arabidopsis thaliana] gi|332641549|gb|AEE75070.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 287/470 (61%), Positives = 337/470 (71%), Gaps = 67/470 (14%)

Query: 1   MSRQQNQTQNFFP-GKIRKRGCSSSASSTSSIV-QNYRFKRAILIGKRGGGGGSATPVPT 58
           M RQ    +N    GKIRKRGCSS  SSTSSI+ + YRFKRAI++GKRGG   S TPVPT
Sbjct: 1   MPRQNQSVENLLLLGKIRKRGCSSPTSSTSSILREGYRFKRAIVVGKRGG---STTPVPT 57

Query: 59  WRLMRTTPS----SVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLW 114
           WRLM  +PS      L A  S S + G    +K  ++        +  PVSARKLAATLW
Sbjct: 58  WRLMGRSPSPRASGALHAAASPSSHCG----SKTGKVS-------APAPVSARKLAATLW 106

Query: 115 EMNEMPSPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVS 174
           EMNEMPSP++ E +         IR+  + R         S+HSGSLPPHLSDPSHSPVS
Sbjct: 107 EMNEMPSPRVVEEAAP------MIRKSRKERIAPLPPPRSSVHSGSLPPHLSDPSHSPVS 160

Query: 175 E-----------------------------------------VETRSRAQTPSGSTVGVK 193
           E                                         +ETRSR +TP+GSTVGVK
Sbjct: 161 ERMERSGTGSRQRRASSTVQKLRLGDCNVGARDPINSGSFMDIETRSRVETPTGSTVGVK 220

Query: 194 TRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRS 253
           TRLKD SNALTTSKELLKIINRMWGQ+DRPSSSMSLVSALH+ELERARLQVNQLI E + 
Sbjct: 221 TRLKDCSNALTTSKELLKIINRMWGQDDRPSSSMSLVSALHSELERARLQVNQLIHEHKP 280

Query: 254 DQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELA 313
           + ++ISYLMK FAEEKA WK+ E+EVVEAAIES+AGELEVERKLRRRFESLNKKLGKELA
Sbjct: 281 ENNDISYLMKRFAEEKAVWKSNEQEVVEAAIESVAGELEVERKLRRRFESLNKKLGKELA 340

Query: 314 ETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKERE 373
           ETK +L+KAVK+++ EKRARV++E+VCDELARDI++DK+EVEELKRES    EEVEKERE
Sbjct: 341 ETKSALMKAVKEIENEKRARVMVEKVCDELARDISEDKAEVEELKRESFKVKEEVEKERE 400

Query: 374 MIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRK 423
           M+Q+AD LREER Q+KLSEAK+QLEEKNAAVDKLR+QL+ + + ++ K K
Sbjct: 401 MLQLADALREERVQMKLSEAKHQLEEKNAAVDKLRNQLQTYLKAKRCKEK 450

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829712|ref|XP_002882738.1| hypothetical protein ARALYDRAFT_478504 [Arabidopsis lyrata subsp. lyrata] gi|297328578|gb|EFH58997.1| hypothetical protein ARALYDRAFT_478504 [Arabidopsis lyrata subsp. lyrata]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 286/470 (60%), Positives = 332/470 (70%), Gaps = 68/470 (14%)

Query: 1   MSRQQNQTQNFFP-GKIRKRGCSSSASSTSSIV-QNYRFKRAILIGKRGGGGGSATPVPT 58
           M RQ    +N    GKIRKRGCSS  SSTSSI+ + YRFKRAI++GKRGG   S TPVPT
Sbjct: 1   MPRQNQSVENLLLLGKIRKRGCSSPTSSTSSILREGYRFKRAIVVGKRGG---STTPVPT 57

Query: 59  WRLMRTTPS----SVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLW 114
           WRLM  +PS      L A    S  G    K              +  PVSARKLAATLW
Sbjct: 58  WRLMGRSPSPRASGALHAASPSSHCGSKTGKVS------------APAPVSARKLAATLW 105

Query: 115 EMNEMPSPKLRETSGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVS 174
           EMNEMPSP++ E +         IR+  + R         S+HSGSLPPHLSDPSHSPVS
Sbjct: 106 EMNEMPSPRVVEAA------VPMIRKSRKERIAPLPPPRSSVHSGSLPPHLSDPSHSPVS 159

Query: 175 E-----------------------------------------VETRSRAQTPSGSTVGVK 193
           E                                         +ETRSR +TP+GSTVGVK
Sbjct: 160 ERMERSGTGSRQRRASSTVQKLRLGDCNVGARDPISNGSFMDIETRSRVETPTGSTVGVK 219

Query: 194 TRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRS 253
           TRLKD SNALTTSKELLKIINRMWGQ+DRPSSSMSLVSALH+ELERARLQVNQLI E + 
Sbjct: 220 TRLKDCSNALTTSKELLKIINRMWGQDDRPSSSMSLVSALHSELERARLQVNQLIHEHKP 279

Query: 254 DQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELA 313
           + ++ISYLMK FAEEKAAWK+ E+EVVEAAIES+AGELEVERKLRRRFESLNKKLGKELA
Sbjct: 280 ENNDISYLMKRFAEEKAAWKSNEQEVVEAAIESVAGELEVERKLRRRFESLNKKLGKELA 339

Query: 314 ETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKERE 373
           ETK +L+KAVK+++ EKRARV++E+VCDELARDI++DK+EVEELKRES    EEVEKERE
Sbjct: 340 ETKSALMKAVKEIENEKRARVMVEKVCDELARDISEDKAEVEELKRESFKVKEEVEKERE 399

Query: 374 MIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRK 423
           M+Q+AD LREER Q+KLSEAK+QLEEKNA VDKLR+QL+ + + ++ K K
Sbjct: 400 MLQLADALREERVQMKLSEAKHQLEEKNATVDKLRNQLQTYLKAKRCKEK 449

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505402|ref|XP_003521480.1| PREDICTED: uncharacterized protein At5g41620-like [Glycine max]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 284/448 (63%), Positives = 324/448 (72%), Gaps = 72/448 (16%)

Query: 8   TQNFFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSATPVPTWRLMRTTPS 67
           T +  PGKIRKRGCSSSASS+SS++ NYRFKR IL+GKRGG   S+TPVPTW+LM +   
Sbjct: 10  TMDMIPGKIRKRGCSSSASSSSSVLHNYRFKRTILVGKRGG---SSTPVPTWKLMSSR-- 64

Query: 68  SVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHSQQPVSARKLAATLWEMNEMPSPKLRET 127
           S LRA+            A       Q  ++  Q PVSARKLAATLWEMNE+PSP     
Sbjct: 65  SPLRAL------------ASPKYPPSQTGNKPRQAPVSARKLAATLWEMNEIPSPS---- 108

Query: 128 SGGGGYDERRIRREARARERERERVTRSLHSGSLPPHLSDPSHSPVSE------------ 175
                    R ++E R RER    V RS+ SGSLPPHLSDPSHSPVSE            
Sbjct: 109 ------PSVRSKKELRTRER----VPRSMRSGSLPPHLSDPSHSPVSERLDRSGTGSRQK 158

Query: 176 -----------------------------VETRSRAQTPSGSTVGVKTRLKDVSNALTTS 206
                                        +ETRSRAQTP+ S V VK RLKDVSNAL TS
Sbjct: 159 RTPSISQGARITEHHVGPLDSLSNVSLMEIETRSRAQTPASSAVAVKARLKDVSNALMTS 218

Query: 207 KELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA 266
           KELL+IINRMWG EDRPSSSMSL+SALH ELERARLQVNQLIQEQRSDQ+EI+YLMKCFA
Sbjct: 219 KELLRIINRMWGHEDRPSSSMSLISALHTELERARLQVNQLIQEQRSDQNEINYLMKCFA 278

Query: 267 EEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDL 326
           EEKAAWK KE E+VEAAIES+AGEL+VERKLRRR ESLNKKLG+ELA+TK SLLK VK+L
Sbjct: 279 EEKAAWKKKEEEIVEAAIESVAGELDVERKLRRRLESLNKKLGRELADTKTSLLKVVKEL 338

Query: 327 DTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERA 386
           ++EKRAR +IEQVCDELARD ++DKS++E+ KR S    EEVEKE+E++Q+ D LREERA
Sbjct: 339 ESEKRAREIIEQVCDELARDADEDKSDIEKQKRVSTKVCEEVEKEKEIMQLTDRLREERA 398

Query: 387 QIKLSEAKYQLEEKNAAVDKLRSQLEAF 414
           Q KLSEAKYQLEEKNAAVDKLR+QLEAF
Sbjct: 399 QKKLSEAKYQLEEKNAAVDKLRNQLEAF 426

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
TAIR|locus:2080792	622	AT3G11590 [Arabidopsis thalian	0.575	0.400	0.775	6.6e-121
TAIR|locus:2007996	725	AT1G50660 [Arabidopsis thalian	0.496	0.296	0.421	1.4e-44
TAIR|locus:2092319	673	AT3G20350 [Arabidopsis thalian	0.505	0.325	0.401	1.2e-40
TAIR|locus:2160477	623	AT5G41620 "AT5G41620" [Arabido	0.577	0.401	0.343	1.1e-37
TAIR|locus:2062877	468	AT2G46250 "AT2G46250" [Arabido	0.494	0.457	0.334	3.3e-35
TAIR|locus:2176387	481	AT5G22310 "AT5G22310" [Arabido	0.360	0.324	0.421	4.4e-35
TAIR|locus:2024568	593	AT1G64180 "AT1G64180" [Arabido	0.521	0.381	0.316	1.3e-30
TAIR|locus:2027402	247	AT1G11690 "AT1G11690" [Arabido	0.290	0.510	0.278	6e-10
TAIR|locus:2010876	273	BLT "AT1G64690" [Arabidopsis t	0.304	0.483	0.317	1.8e-08
CGD|CAL0001468	895	SYS3 [Candida albicans (taxid:	0.720	0.348	0.202	1.5e-07

TAIR|locus:2080792 AT3G11590 [Arabidopsis thaliana (taxid:3702)]

 Score = 975 (348.3 bits), Expect = 6.6e-121, Sum P(2) = 6.6e-121
 Identities = 193/249 (77%), Positives = 227/249 (91%)

Query:   175 EVETRSRAQTPSGSTVGVKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALH 234
             ++ETRSR +TP+GSTVGVKTRLKD SNALTTSKELLKIINRMWGQ+DRPSSSMSLVSALH
Sbjct:   202 DIETRSRVETPTGSTVGVKTRLKDCSNALTTSKELLKIINRMWGQDDRPSSSMSLVSALH 261

Query:   235 AELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVE 294
             +ELERARLQVNQLI E + + ++ISYLMK FAEEKA WK+ E+EVVEAAIES+AGELEVE
Sbjct:   262 SELERARLQVNQLIHEHKPENNDISYLMKRFAEEKAVWKSNEQEVVEAAIESVAGELEVE 321

Query:   295 RKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEV 354
             RKLRRRFESLNKKLGKELAETK +L+KAVK+++ EKRARV++E+VCDELARDI++DK+EV
Sbjct:   322 RKLRRRFESLNKKLGKELAETKSALMKAVKEIENEKRARVMVEKVCDELARDISEDKAEV 381

Query:   355 EELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAF 414
             EELKRES    EEVEKEREM+Q+AD LREER Q+KLSEAK+QLEEKNAAVDKLR+QL+ +
Sbjct:   382 EELKRESFKVKEEVEKEREMLQLADALREERVQMKLSEAKHQLEEKNAAVDKLRNQLQTY 441

Query:   415 SRNQKGKRK 423
              + ++ K K
Sbjct:   442 LKAKRCKEK 450

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2007996 AT1G50660 [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 91/216 (42%), Positives = 151/216 (69%)

Query:   203 LTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLM 262
             L T +E+ +I + M  + D+  +++SLVS+L AELE A  ++  L  E+RS + ++   +
Sbjct:   213 LDTMEEVHQIYSNM-KRIDQQVNAVSLVSSLEAELEEAHARIEDLESEKRSHKKKLEQFL 271

Query:   263 KCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKA 322
             +  +EE+AAW+++E E V A I+ +  ++  E+K R+R E +N KL  ELA++K ++ + 
Sbjct:   272 RKVSEERAAWRSREHEKVRAIIDDMKTDMNREKKTRQRLEIVNHKLVNELADSKLAVKRY 331

Query:   323 VKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLR 382
             ++D + E++AR +IE+VCDELA++I +DK+E+E LKRES    EEV+ ER M+Q+A+V R
Sbjct:   332 MQDYEKERKARELIEEVCDELAKEIGEDKAEIEALKRESMSLREEVDDERRMLQMAEVWR 391

Query:   383 EERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQ 418
             EER Q+KL +AK  LEE+ + ++KL   LE+F R++
Sbjct:   392 EERVQMKLIDAKVALEERYSQMNKLVGDLESFLRSR 427

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2092319 AT3G20350 [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
 Identities = 90/224 (40%), Positives = 145/224 (64%)

Query:   203 LTTSKELLKII-NRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYL 261
             L T  ++ +I  N  W  +    + +SL S++  +L+ AR  +  L  E+RS + ++   
Sbjct:   190 LDTRDDVHQIYTNVKWNNQQ--VNDVSLASSIELKLQEARACIKDLESEKRSQKKKLEQF 247

Query:   262 MKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLK 321
             +K  +EE+AAW+++E E V A I+ +  ++  E+K R+R E +N KL  ELA++K ++ +
Sbjct:   248 LKKVSEERAAWRSREHEKVRAIIDDMKADMNQEKKTRQRLEIVNSKLVNELADSKLAVKR 307

Query:   322 AVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVL 381
              + D   E++AR +IE+VCDELA++I +DK+E+E LK ES    EEV+ ER M+Q+A+V 
Sbjct:   308 YMHDYQQERKARELIEEVCDELAKEIEEDKAEIEALKSESMNLREEVDDERRMLQMAEVW 367

Query:   382 REERAQIKLSEAKYQLEEKNAAVDKLRSQLEAF--SRNQKGKRK 423
             REER Q+KL +AK  LEEK + ++KL   +EAF  SRN  G ++
Sbjct:   368 REERVQMKLIDAKVTLEEKYSQMNKLVGDMEAFLSSRNTTGVKE 411

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2160477 AT5G41620 "AT5G41620" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
 Identities = 88/256 (34%), Positives = 158/256 (61%)

Query:   175 EVETRSRAQTPSGSTVGVKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALH 234
             EV T ++A TPS S        ++    L TS ELLK++NR+W  E++  S++SL+ AL 
Sbjct:   165 EVTTYNKAVTPSSSLEFRGRPSREPHYNLKTSTELLKVLNRIWSLEEQHVSNISLIKALK 224

Query:   235 AELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVE 294
              E+  +R+++ +L++ Q++D+ E+  ++K  AEEK   KNKE E + +A++S+   LE E
Sbjct:   225 TEVAHSRVRIKELLRYQQADRHELDSVVKQLAEEKLLSKNKEVERMSSAVQSVRKALEDE 284

Query:   295 RKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEV 354
             RKLR+R ESL++K+ +EL+E K SL   VK+L+   ++  ++E +CDE A+ I   + E+
Sbjct:   285 RKLRKRSESLHRKMARELSEVKSSLSNCVKELERGSKSNKMMELLCDEFAKGIKSYEEEI 344

Query:   355 EELKRESAIALEEVEK---EREMIQVADVLREERAQIKLSEAKYQLEEKNAAV-DKLRSQ 410
               LK+++ +  +   +   ++ ++ +A+   +ER Q++L E    L  KN +V DKL  +
Sbjct:   345 HGLKKKN-LDKDWAGRGGGDQLVLHIAESWLDERMQMRL-EGGDTLNGKNRSVLDKLEVE 402

Query:   411 LEAFSRNQKGKRKRTQ 426
             +E F + ++ +  R +
Sbjct:   403 IETFLQEKRNEIPRNR 418

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2062877 AT2G46250 "AT2G46250" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 3.3e-35, Sum P(3) = 3.3e-35
 Identities = 81/242 (33%), Positives = 142/242 (58%)

Query:   185 PSGSTVGVKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQV 244
             P+ S  G  + +K  S  L +S +LLK++NR+W  E++ +++MSLV AL  EL+  R ++
Sbjct:   142 PAFSQTG-SSAVKSASYGLGSSTKLLKVLNRIWSLEEQNTANMSLVRALKMELDECRAEI 200

Query:   245 NQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESL 304
              ++  +QR   S+           +   K KE E V+    SI  EL+ ERK+R+  E+L
Sbjct:   201 KEV--QQRKKLSD-----------RPLRKKKEEEEVKDVFRSIKRELDDERKVRKESETL 247

Query:   305 NKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIA 364
             ++KL +EL E KH L KA+KDL+ E + RVV+E +CDE A+ + D + +V  + ++S ++
Sbjct:   248 HRKLTRELCEAKHCLSKALKDLEKETQERVVVENLCDEFAKAVKDYEDKVRRIGKKSPVS 307

Query:   365 LEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRKR 424
                   ++ ++Q+A+V  ++R Q+KL E     ++K      LR++ ++ S++ KG   R
Sbjct:   308 ------DKVIVQIAEVWSDQRLQMKLEE-----DDKTFL---LRAKEKSRSQSSKGSGLR 353

Query:   425 TQ 426
              +
Sbjct:   354 AK 355

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2176387 AT5G22310 "AT5G22310" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 4.4e-35, Sum P(2) = 4.4e-35
 Identities = 75/178 (42%), Positives = 111/178 (62%)

Query:   244 VNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFES 303
             ++ L+ E    +S + +LM    EE+   + K R      IES+  E  VERKLRRR E 
Sbjct:   214 ISALLCELDRARSSLKHLMSELDEEE---EEKRR-----LIESLQEEAMVERKLRRRTEK 265

Query:   304 LNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAI 363
             +N++LG+EL E K +  K  +++  EKRA+ V+E+VCDEL + I DDK            
Sbjct:   266 MNRRLGRELTEAKETERKMKEEMKREKRAKDVLEEVCDELTKGIGDDK------------ 313

Query:   364 ALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGK 421
               +E+EKEREM+ +ADVLREER Q+KL+EAK++ E+K AAV++L+ +L      ++GK
Sbjct:   314 --KEMEKEREMMHIADVLREERVQMKLTEAKFEFEDKYAAVERLKKELRRVLDGEEGK 369

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2024568 AT1G64180 "AT1G64180" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 1.3e-30, Sum P(3) = 1.3e-30
 Identities = 74/234 (31%), Positives = 139/234 (59%)

Query:   193 KTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQR 252
             + R  + +N + TS ELLK++NR+W  E++ S+++SL+ +L  EL  +R ++  L++ ++
Sbjct:   175 RRRAGEPNNNIKTSTELLKVLNRIWILEEQHSANISLIKSLKTELAHSRARIKDLLRCKQ 234

Query:   253 SDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKEL 312
             +D+ ++   +K  AEEK +   KE + + +A++S    LE ERKLR+R ESL +KL +EL
Sbjct:   235 ADKRDMDDFVKQLAEEKLSKGTKEHDRLSSAVQS----LEDERKLRKRSESLYRKLAQEL 290

Query:   313 AETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKER 372
             +E K +L   VK+++    ++ ++E++CDE A+ I   + E+  LK++     +  +++ 
Sbjct:   291 SEVKSTLSNCVKEMERGTESKKILERLCDEFAKGIKSYEREIHGLKQKLDKNWKGWDEQD 350

Query:   373 EMIQ-VADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRKRT 425
              MI  +A+   +ER Q     A  +LE +      L++   A S N+  + +RT
Sbjct:   351 HMILCIAESWLDERIQSGNGSALEKLEFEIETF--LKTNQNADS-NEIARNRRT 401

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2027402 AT1G11690 "AT1G11690" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 6.0e-10, P = 6.0e-10
 Identities = 39/140 (27%), Positives = 81/140 (57%)

Query:   273 KNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA 332
             +N++ E     ++ +  +L  ER+ ++R ++ N +L K++ + + S+ +  ++ DT    
Sbjct:    71 RNEKEETTNPFVDYLKEKLSKEREEKKRVKAENSRLKKKILDMESSVNRLRRERDT---- 126

Query:   333 RVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSE 392
                +E+VC+EL        + ++ELK  +    +E E+ER+M+Q+A++ REER ++K  +
Sbjct:   127 ---MEKVCEELV-------TRIDELKVNTRRVWDETEEERQMLQMAEMWREERVRVKFMD 176

Query:   393 AKYQLEEKNAAVDKLRSQLE 412
             AK  L+EK   ++    +LE
Sbjct:   177 AKLALQEKYEEMNLFVVELE 196

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010876 BLT "AT1G64690" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 46/145 (31%), Positives = 82/145 (56%)

Query:   280 VEAAIESIAGELEVE-RKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQ 338
             ++  +ES  G+ + E ++L+   +   K   +  AE    + K  KD++ E+ AR   E 
Sbjct:    69 IKVFMESELGKAQDEIKELKAELDYERK--ARRRAELM--IKKLAKDVEEERMAREAEEM 124

Query:   339 VCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLE 398
                 L ++++ +KSE+  +KR+       +E+ER+M ++A+VLREER Q+KL +A+  LE
Sbjct:   125 QNKRLFKELSSEKSEMVRMKRD-------LEEERQMHRLAEVLREERVQMKLMDARLFLE 177

Query:   399 EKNAAVDKLRSQLEAFSRNQKGKRK 423
             EK + +++   Q E   RN+  K K
Sbjct:   178 EKLSELEEANRQGER-ERNRMMKPK 201

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0010090 "trichome morphogenesis" evidence=IMP

CGD|CAL0001468 SYS3 [Candida albicans (taxid:5476)]

 Score = 153 (58.9 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 68/335 (20%), Positives = 138/335 (41%)

Query:   105 SARKLAATLWEMNEMPSPKLRETSGGGGYDXXXXXXXXXXXXXXXXXV-TRXXXXXXXXX 163
             ++++L   L E  E+P+ K+ +     G +                 + T          
Sbjct:   286 NSKELNTELEEPKEVPTEKVNQDKSSSGEENTDKDSSVGDSSDNSDVLNTEISQLKSQLS 345

Query:   164 XXXXXXXXXXXEVET-RSRAQTPSGSTVGVKTRLKDVSNALTTSKELLKIINRMWGQEDR 222
                        EV T +S+    +     ++  +K++ N L TSK+ +K +       D 
Sbjct:   346 TKETEVEELTNEVRTLKSQLNDKNEEIEDLRDSVKEIGNELVTSKDEIKSLKNSQKSTDN 405

Query:   223 PSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEA 282
               S+       + ++    L+ N  ++E +  + E+    K  ++EK   + K  + +  
Sbjct:   406 EDSTTK--EDTNTQINDWELKYNSQLKENKELKEELDVATK-ESKEKEKERKKSEDQLRK 462

Query:   283 AIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLD----TEKRARVVIEQ 338
              I+++  +LE       +FES  K L K L+E K  L K + +L      +   ++ I  
Sbjct:   463 QIQTLKQKLE---STENKFESKTKDL-KNLSEEKEKLEKRISELSKFKSNDSSLKLEISS 518

Query:   339 VCDELA-RD--INDDKSEVEELKRESAIA---LEEVEKEREMIQV--ADVLREERAQIKL 390
             +   L  +D  IN+ K++V+ELK+ +      +EE+ K    +Q    D L+++   +  
Sbjct:   519 LKSSLTNKDNSINELKTQVDELKQSNKSLNSKVEELSKSNNELQSNSMDFLKDKNELLTK 578

Query:   391 SEAKYQ-LEEKNAAVDKLRSQLE-AFSRNQKGKRK 423
              E   +  +  N+ V KL+ + +   +  +K K K
Sbjct:   579 QEVLMENTKSLNSQVTKLQQEKQDVITELEKTKNK 613

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021553001 SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (609 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	433
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 19/232 (8%)

Query: 193 KTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQR 252
           +  L ++   L   +E L+ + +   +  R       +SAL  +L R   +V QL +   
Sbjct: 697 EKALAELRKELEELEEELEQLRKELEELSR------QISALRKDLARLEAEVEQLEERIA 750

Query: 253 SDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKEL 312
               E++ L              E E +E  +E    EL          E+  ++L +EL
Sbjct: 751 QLSKELTEL------------EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798

Query: 313 AETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKER 372
              + +L +   +L         + +  + L R I   +  +E+L+ +     E++E   
Sbjct: 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858

Query: 373 EMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRKR 424
             I+  + L EE  + +L     +      A+  LRS+LE  S   +    +
Sbjct: 859 AEIEELEELIEE-LESELEALLNERASLEEALALLRSELEELSEELRELESK 909

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 8/191 (4%)

Query: 235 AELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVE 294
            EL R   ++ +L +E    + EI  L     E +   +  + E++E   E    E E+ 
Sbjct: 246 EELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEIS 305

Query: 295 RKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEV 354
             LR R E L  +L +EL E    L + ++ L  E   R  + +   EL + + + +   
Sbjct: 306 L-LRERLEELENEL-EELEERLEELKEKIEALKEELEERETLLE---ELEQLLAELEEAK 360

Query: 355 EELKRESAIALEEVEKEREMIQV-ADVLREERAQI--KLSEAKYQLEEKNAAVDKLRSQL 411
           EEL+ + +  LEE+E+  E ++     L  E A+I  +L E K ++E     +++L  +L
Sbjct: 361 EELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERL 420

Query: 412 EAFSRNQKGKR 422
           E      K   
Sbjct: 421 EDLKEELKELE 431

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 44/196 (22%), Positives = 88/196 (44%), Gaps = 12/196 (6%)

Query: 232 ALHAELERARLQVNQLIQEQRSDQSEISYL---MKCFAEEKAAWKNKEREVVEAAIESIA 288
            L  ELE A  +++ L +E  S +     L   ++   EE    + K  E+ E  +E + 
Sbjct: 797 ELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL-EEELEELE 855

Query: 289 GELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDIN 348
            ELE  ++     E+  ++L  EL E +    +  ++L   +     +++  ++L   + 
Sbjct: 856 KELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLE 915

Query: 349 DDKSEVEELKRESAIALEEVEKEREMIQVADVLRE-ERAQIKLSE-------AKYQLEEK 400
           + ++++E L+ E     EE+E+E E     ++ RE ER + ++         A  + EE 
Sbjct: 916 ELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEV 975

Query: 401 NAAVDKLRSQLEAFSR 416
               ++L+SQ E    
Sbjct: 976 EERYEELKSQREDLEE 991

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 39/182 (21%), Positives = 71/182 (39%), Gaps = 20/182 (10%)

Query: 232 ALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL 291
            L  ELE  + ++ +  +E     +E+  L     EEK      E   +E  IE +  EL
Sbjct: 236 ELREELEELQEELKEAEEELEELTAELQEL-----EEKLEELRLEVSELEEEIEELQKEL 290

Query: 292 EVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDK 351
                           L  E++  +       + L   +R    +E   +EL   +++  
Sbjct: 291 YA--------------LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336

Query: 352 SEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQL 411
            E+ EL+ +     EE+E     ++  +   EE    +L E + QLE   + V +L  Q+
Sbjct: 337 EELAELEEKLEELKEELESLEAELEELEAELEELES-RLEELEEQLETLRSKVAQLELQI 395

Query: 412 EA 413
            +
Sbjct: 396 AS 397

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 51/247 (20%), Positives = 111/247 (44%), Gaps = 18/247 (7%)

Query: 194 TRLKDVSNALTTSKELLKIINRMWGQ-EDRPSSSMSLVSALHAELERARLQVNQLIQEQR 252
             LK + N L + ++LL+ + R   + E +       ++AL  ELE+ + ++ +L +E  
Sbjct: 688 EELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELE 747

Query: 253 SDQSEISYLMKC--FAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFE---SLNKK 307
             + E+  L +     EE+     +    ++  IE +  + +  ++     E      ++
Sbjct: 748 ELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAER 807

Query: 308 LGKELAETKHSLLKAVKDLDTE----KRARVVIEQVCDELARDINDDKSEVEELKRESAI 363
               L     SL +  + L+ E    +     +E+  DEL  ++ + + E+EELK E   
Sbjct: 808 RLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEE--- 864

Query: 364 ALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRK 423
            LEE+E E+E  ++ D L+E   + +  E + +L E  + + +L+ ++E      +    
Sbjct: 865 -LEELEAEKE--ELEDELKELEEEKE--ELEEELRELESELAELKEEIEKLRERLEELEA 919

Query: 424 RTQFCKS 430
           + +  + 
Sbjct: 920 KLERLEV 926

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 42/228 (18%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 208 ELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAE 267
           EL + +     + +  ++ +  +     EL     ++ + I+E + +   ++  +    +
Sbjct: 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ 302

Query: 268 EKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLD 327
           +K   + +   +     E  A   E+E KL    E L  +L ++L E K  L     +L+
Sbjct: 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELA-ELEEKLEELKEELESLEAELE 361

Query: 328 TEKRARVVIEQVCDELARDINDDKSEVEELKRESAIA---LEEVEKEREMI--------Q 376
             +     +E   +EL   +   +S+V +L+ + A     +E +E   E +        Q
Sbjct: 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421

Query: 377 VADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRKR 424
             + L ++  + +L E + +LEE    +++L+ +LE      +  R+ 
Sbjct: 422 EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 41/184 (22%), Positives = 79/184 (42%), Gaps = 11/184 (5%)

Query: 236 ELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREV------VEAAIESIAG 289
            LE    ++ +  +     ++ +  +     E     + + RE+      +E  IE +  
Sbjct: 236 ALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEE 295

Query: 290 ELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDIND 349
                 +L    E L   L +EL E    L    + L+  +     +E   +ELA + N+
Sbjct: 296 LEREIEELEEELEGLRALL-EELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNE 354

Query: 350 DKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRS 409
               +EE  +E    LEE+EKE E      + R ++ +  + E K +L E +AA+++++ 
Sbjct: 355 LAKLLEERLKELEERLEELEKELE----KALERLKQLEEAIQELKEELAELSAALEEIQE 410

Query: 410 QLEA 413
           +LE 
Sbjct: 411 ELEE 414

Length = 908

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 40.5 bits (96), Expect = 0.001
 Identities = 39/178 (21%), Positives = 81/178 (45%), Gaps = 27/178 (15%)

Query: 235 AELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL-EV 293
           A+++ A  +  ++++E + +   I    +   E K        E  E  +     EL ++
Sbjct: 31  AKIKEAEEEAKRILEEAKKEAEAIK--KEALLEAKEEIHKLRNEF-EKELRERRNELQKL 87

Query: 294 ERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSE 353
           E++L ++ E+L++KL + L + +  L K  K+L+ +++              ++   + E
Sbjct: 88  EKRLLQKEENLDRKL-ELLEKREEELEKKEKELEQKQQ--------------ELEKKEEE 132

Query: 354 VEELKRESAIALEEV-----EKEREMI--QVADVLREERAQ-IKLSEAKYQLEEKNAA 403
           +EEL  E    LE +     E+ +E++  +V +  R E A  IK  E + + E    A
Sbjct: 133 LEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKA 190

Length = 520

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 40/229 (17%), Positives = 87/229 (37%), Gaps = 43/229 (18%)

Query: 219 QEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQ----------------------- 255
            E+R       +S    ++     ++ QL QE+   +                       
Sbjct: 700 IENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE 759

Query: 256 -----SEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFE----SLNK 306
                + I  L +   + + A  + E  +  + I  I  EL    +   R E     + +
Sbjct: 760 LKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQ 819

Query: 307 KLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESA---I 363
           KL +   E K  L K +++L  ++     +++    + ++I +   + EEL+ E      
Sbjct: 820 KLNRLTLE-KEYLEKEIQELQEQRID---LKEQIKSIEKEIENLNGKKEELEEELEELEA 875

Query: 364 ALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLE 412
           AL ++E     ++  +    +  + +L E + ++EE  A ++K R +L 
Sbjct: 876 ALRDLESRLGDLK-KER---DELEAQLRELERKIEELEAQIEKKRKRLS 920

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	433
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.45
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.96
KOG0971	1243	consensus Microtubule-associated protein dynactin	96.78
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.58
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.48
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.16
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	96.15
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.14
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.14
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	96.02
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.01
KOG0996	1293	consensus Structural maintenance of chromosome pro	95.82
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	95.41
KOG0933	1174	consensus Structural maintenance of chromosome pro	95.37
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	95.12
PRK02224	880	chromosome segregation protein; Provisional	94.95
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	94.67
PHA02562	562	46 endonuclease subunit; Provisional	94.36
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	94.1
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	94.01
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	93.85
KOG0933	1174	consensus Structural maintenance of chromosome pro	93.62
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	92.98
KOG0963	629	consensus Transcription factor/CCAAT displacement	92.81
PRK11637	428	AmiB activator; Provisional	92.4
PRK02224	880	chromosome segregation protein; Provisional	92.04
PF05615	139	THOC7: Tho complex subunit 7; InterPro: IPR008501	91.23
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	91.01
PF09727	192	CortBP2: Cortactin-binding protein-2; InterPro: IP	90.23
PRK09039	343	hypothetical protein; Validated	90.11
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	89.93
PRK03918	880	chromosome segregation protein; Provisional	89.75
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	89.55
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	89.14
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	88.35
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	87.99
KOG0996	1293	consensus Structural maintenance of chromosome pro	87.72
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	87.5
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	86.38
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	85.85
KOG1103	561	consensus Predicted coiled-coil protein [Function	85.77
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	84.85
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	84.79
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	84.23
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	83.14
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	82.75
PF09731	582	Mitofilin: Mitochondrial inner membrane protein; I	82.7
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	82.01
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	81.82
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	81.05
PHA02562	562	46 endonuclease subunit; Provisional	80.74
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	80.36
KOG0964	1200	consensus Structural maintenance of chromosome pro	80.19
PF10186	302	Atg14: UV radiation resistance protein and autopha	80.12

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.45  E-value=0.037  Score=61.50  Aligned_cols=68  Identities=31%  Similarity=0.367  Sum_probs=58.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHH
Q 013958          225 SSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESL  304 (433)
Q Consensus       225 s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~l  304 (433)
                      ..=+-|..|+.|-++.+.++..|.+.++.++..|..|=|+|++|+..+-            .+-.+|..|||.|+..|.-
T Consensus       457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~------------~lEkQL~eErk~r~~ee~~  524 (697)
T PF09726_consen  457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRA------------SLEKQLQEERKARKEEEEK  524 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhHHHHh
Confidence            4446688999999999999999999999999999999999999986543            3677899999999998763

; GO: 0016021 integral to membrane

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.96  E-value=0.47  Score=51.83  Aligned_cols=116  Identities=19%  Similarity=0.317  Sum_probs=63.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHhhhcc----cHHHHHHHHHHhHHHHHHH-HHhHHH
Q 013958          301 FESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIE-QVCDELARDIND----DKSEVEELKRESAIALEEV-EKEREM  374 (433)
Q Consensus       301 ~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE-~vCdELAk~I~e----~kaEve~lKres~k~~eE~-eeER~M  374 (433)
                      ++.-+-.|++||+++...=.+.+.||-.-|-.-.=|. .+|| .+-.+++    ...|...|.+..+..++++ +-.+++
T Consensus       302 Sqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad-~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el  380 (546)
T PF07888_consen  302 SQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLAD-ASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSREL  380 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            4455567788888887777777777776664322222 2232 2223333    2333344444334443444 234556


Q ss_pred             HHHhHhhhHHhhh----------------hhhhHhhhhhhhhhHHHHHHHHHHHHHHhh
Q 013958          375 IQVADVLREERAQ----------------IKLSEAKYQLEEKNAAVDKLRSQLEAFSRN  417 (433)
Q Consensus       375 LqmAEvWREERVQ----------------MKL~eAk~~leeK~s~ldkL~~elE~FL~s  417 (433)
                      .++++...|||.+                +.|+|++-.|.|+.+.+-.++-|=|-+...
T Consensus       381 ~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~E  439 (546)
T PF07888_consen  381 QMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEE  439 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666653                567777777777777666555555555443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.78  E-value=0.19  Score=57.66  Aligned_cols=174  Identities=26%  Similarity=0.359  Sum_probs=125.9

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH---------HHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHH
Q 013958          224 SSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISY---------LMKCFAEEKAAWKNKEREVVEAAIESIAGELEVE  294 (433)
Q Consensus       224 ~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~---------l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~E  294 (433)
                      +--|--+.-|+-||.+||...++++.-+..++.+|++         |=|.+||||+.-=--|-+-.+..|++|-.+||-=
T Consensus       272 Skim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEIL  351 (1243)
T KOG0971|consen  272 SKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEIL  351 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667789999999999999998888877777655         4588999999888888888888888888777653


Q ss_pred             HH---------------HhhhHHHHhHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHH
Q 013958          295 RK---------------LRRRFESLNKKLGKEL-------AETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKS  352 (433)
Q Consensus       295 Rk---------------~Rrr~E~ln~KL~~EL-------aE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~ka  352 (433)
                      |-               --+++|.-|.||-.-|       +..|.-..++.+++|+-+-.-.-|+.+-.-|-+.|...+.
T Consensus       352 KaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs  431 (1243)
T KOG0971|consen  352 KAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAES  431 (1243)
T ss_pred             HHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33               2478999999997766       4556677788889988888888888888888888888888


Q ss_pred             HHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHH
Q 013958          353 EVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEA  413 (433)
Q Consensus       353 Eve~lKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~  413 (433)
                      -|-.|+..-+.+.   --|-.+-|             |+|-++.||+|.-.|+.-+.|||+
T Consensus       432 ~iadlkEQVDAAl---GAE~MV~q-------------LtdknlnlEekVklLeetv~dlEa  476 (1243)
T KOG0971|consen  432 TIADLKEQVDAAL---GAEEMVEQ-------------LTDKNLNLEEKVKLLEETVGDLEA  476 (1243)
T ss_pred             HHHHHHHHHHHhh---cHHHHHHH-------------HHhhccCHHHHHHHHHHHHHHHHH
Confidence            8888886644332   22333333             444444555555555544444444

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.58  E-value=0.24  Score=55.31  Aligned_cols=127  Identities=21%  Similarity=0.297  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------hhh-------chHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHH
Q 013958          229 LVSALHAELERARLQVNQLIQE-------QRS-------DQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVE  294 (433)
Q Consensus       229 lv~aL~~EL~~Ar~~I~eL~~E-------~~s-------~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~E  294 (433)
                      =|+.|++||..+|..=.||-..       .+.       .+++.|.|..++.+=.     +.+++=+..++.|-..|.+|
T Consensus       426 dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~-----~aRq~DKq~l~~LEkrL~eE  500 (697)
T PF09726_consen  426 DVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV-----QARQQDKQSLQQLEKRLAEE  500 (697)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence            3677888888777655555444       222       2333444444443332     22333456788888889999


Q ss_pred             HHHhhhHHHHhH--HHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhH
Q 013958          295 RKLRRRFESLNK--KLGKELAETKHSLLKAV--------KDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESA  362 (433)
Q Consensus       295 Rk~Rrr~E~ln~--KL~~ELaE~K~s~~~al--------kelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~  362 (433)
                      ++.|..+|.-=.  |=++--+|.++  .+++        .--|.=|..+.=||.-|+.|-+++..-+..+..|..+..
T Consensus       501 ~~~R~~lEkQL~eErk~r~~ee~~a--ar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~  576 (697)
T PF09726_consen  501 RRQRASLEKQLQEERKARKEEEEKA--ARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQ  576 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHhh--hhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988875311  11111111111  1110        111223444455666666666666655555555555543

; GO: 0016021 integral to membrane

>TIGR00606 rad50 rad50

Probab=96.48  E-value=0.33  Score=57.06  Aligned_cols=128  Identities=19%  Similarity=0.224  Sum_probs=76.8

Q ss_pred             HHHHHHHhHHHHHHhhhHHHHhHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 013958          284 IESIAGELEVERKLRRRFESLNKKL---GKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRE  360 (433)
Q Consensus       284 i~slk~ELe~ERk~Rrr~E~ln~KL---~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKre  360 (433)
                      +..+..+++.-.......+.--..|   -.++.+.+..+.+.++....-...-+-+...+.++...|.+.+.+++.+..+
T Consensus       838 l~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~  917 (1311)
T TIGR00606       838 LDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETF  917 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            3333333333344444444444444   4567777777777776655555555556666677777777777777777776


Q ss_pred             hHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhc
Q 013958          361 SAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQK  419 (433)
Q Consensus       361 s~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~FL~sk~  419 (433)
                      ..++..+.+.-+.-...    .++..|.++    ..|......+..+..+|+.|+....
T Consensus       918 ~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~i~~y~~~~~  968 (1311)
T TIGR00606       918 LEKDQQEKEELISSKET----SNKKAQDKV----NDIKEKVKNIHGYMKDIENKIQDGK  968 (1311)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            66665554443322222    235555555    3455666788888889998887654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.16  E-value=2.6  Score=47.42  Aligned_cols=9  Identities=22%  Similarity=0.158  Sum_probs=4.2

Q ss_pred             CchhhHhhh
Q 013958           27 STSSIVQNY   35 (433)
Q Consensus        27 ~ss~~~~~~   35 (433)
                      |=|.|+--.
T Consensus        35 GKS~ildAi   43 (1164)
T TIGR02169        35 GKSNIGDAI   43 (1164)
T ss_pred             CHHHHHHHH
Confidence            445554433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=96.15  E-value=0.75  Score=50.30  Aligned_cols=94  Identities=19%  Similarity=0.174  Sum_probs=71.7

Q ss_pred             HhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHhhh
Q 013958          271 AWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA---RVVIEQVCDELARDI  347 (433)
Q Consensus       271 ~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERka---RellE~vCdELAk~I  347 (433)
                      ..=.+|-.+|...|..++.+|++|.-+|...+.-..=|-.||.-.+...+..+.|+-.-...   -..=+..-+||+.-|
T Consensus       172 ~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai  251 (546)
T KOG0977|consen  172 KRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAI  251 (546)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHH
Confidence            34456788999999999999999999999999999999999998888777766554322211   123466778899999


Q ss_pred             cccHHHHHHHHHHhHHH
Q 013958          348 NDDKSEVEELKRESAIA  364 (433)
Q Consensus       348 ~e~kaEve~lKres~k~  364 (433)
                      .|.+++-+...+...+.
T Consensus       252 ~eiRaqye~~~~~nR~d  268 (546)
T KOG0977|consen  252 REIRAQYEAISRQNRKD  268 (546)
T ss_pred             HHHHHHHHHHHHHhHHH
Confidence            98888888776655543

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.14  E-value=1.5  Score=42.92  Aligned_cols=116  Identities=22%  Similarity=0.260  Sum_probs=75.6

Q ss_pred             HhhcCCCCCCCcchh-HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHHHHH
Q 013958          214 NRMWGQEDRPSSSMS-LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEE--KAAWKNKEREVVEAAIESIAGE  290 (433)
Q Consensus       214 nriw~leeq~~s~~S-lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEE--k~~wK~KE~eki~aai~slk~E  290 (433)
                      ..|+.+.+.....++ +-.....||..+|..|..+..++....-+++.+...+.+=  |.......+..+..-|..++.+
T Consensus        32 ~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~  111 (312)
T PF00038_consen   32 SEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKD  111 (312)
T ss_dssp             HHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            345555555333333 6677888888888888888877766666655554444442  2222245567777888889999


Q ss_pred             hHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHH
Q 013958          291 LEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTE  329 (433)
Q Consensus       291 Le~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~E  329 (433)
                      |+.+-..|-.+|.--.-|-.||.-.+....+-+.+|...
T Consensus       112 ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~  150 (312)
T PF00038_consen  112 LDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQ  150 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             hhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence            999999998888888888888887777666656655543

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.14  E-value=3.2  Score=46.69  Aligned_cols=7  Identities=29%  Similarity=0.809  Sum_probs=3.3

Q ss_pred             eeecccc
Q 013958           41 ILIGKRG   47 (433)
Q Consensus        41 ilvgkrg   47 (433)
                      +++|.-|
T Consensus        27 ~i~G~NG   33 (1164)
T TIGR02169        27 VISGPNG   33 (1164)
T ss_pred             EEECCCC
Confidence            4445444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=96.02  E-value=1.3  Score=54.57  Aligned_cols=90  Identities=26%  Similarity=0.384  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHh--HHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHH
Q 013958          230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCF--AEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKK  307 (433)
Q Consensus       230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql--aEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K  307 (433)
                      |+.|..|+..-+.+|..|.+|++.-...+.++.-.+  .+|++.--+|...++...|+++...|+.|++.|..+|...+|
T Consensus       966 ~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rk 1045 (1930)
T KOG0161|consen  966 LKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRK 1045 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555555444455554444  456777778888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 013958          308 LGKELAETKHSL  319 (433)
Q Consensus       308 L~~ELaE~K~s~  319 (433)
                      |.-||...+.+.
T Consensus      1046 le~el~~~~e~~ 1057 (1930)
T KOG0161|consen 1046 LEGELKDLQESI 1057 (1930)
T ss_pred             HHHHHHHhhhHH
Confidence            998886555443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.01  E-value=1.7  Score=42.50  Aligned_cols=76  Identities=28%  Similarity=0.358  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhh-HHHHhH
Q 013958          228 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRR-FESLNK  306 (433)
Q Consensus       228 Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr-~E~ln~  306 (433)
                      .-+..|+.|++..+.+..+..+.+.....++..|-+.+.++-++     +..+...|+.+++||++-++.... ++.|-.
T Consensus        75 ~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~-----r~~le~~i~~L~eEl~fl~~~heeEi~~L~~  149 (312)
T PF00038_consen   75 LEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLA-----RVDLENQIQSLKEELEFLKQNHEEEIEELRE  149 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-----HhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence            34677778888888888888888888888888888888877765     555666788888888887665443 444443


Q ss_pred             HH
Q 013958          307 KL  308 (433)
Q Consensus       307 KL  308 (433)
                      ++
T Consensus       150 ~~  151 (312)
T PF00038_consen  150 QI  151 (312)
T ss_dssp             T-
T ss_pred             cc
Confidence            33

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.82  E-value=2.5  Score=49.96  Aligned_cols=178  Identities=16%  Similarity=0.237  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHhHHHHH--HhhhhH-HHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHH
Q 013958          240 ARLQVNQLIQEQRSDQSEISYLMKCFAEEKA--AWKNKE-REVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETK  316 (433)
Q Consensus       240 Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~--~wK~KE-~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K  316 (433)
                      .++.|-+...+......++...-.++.-+.-  +-|... +..|+.....++...+..++-++.+|.-+.++--.|.-+.
T Consensus       332 ~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~  411 (1293)
T KOG0996|consen  332 SRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLT  411 (1293)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555555555555555555555555552222  222333 3347777888888889999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHH-HhHhhhHH--hhhhhhhHh
Q 013958          317 HSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQ-VADVLREE--RAQIKLSEA  393 (433)
Q Consensus       317 ~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLq-mAEvWREE--RVQMKL~eA  393 (433)
                      +-++++.+++|+.++...-+|..-...-..|.+...|++.|.....+...++++...-|. =++..++|  ..|-.|+..
T Consensus       412 ~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~  491 (1293)
T KOG0996|consen  412 SKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPL  491 (1293)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999988888888888888888877766666666665544442 24444443  345556666


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHhh
Q 013958          394 KYQLEEKNAAVDKLRSQLEAFSRN  417 (433)
Q Consensus       394 k~~leeK~s~ldkL~~elE~FL~s  417 (433)
                      ...+-+.-+.++-...||+-.+..
T Consensus       492 ~~~~n~~~~e~~vaesel~~L~~~  515 (1293)
T KOG0996|consen  492 LKQVNEARSELDVAESELDILLSR  515 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666666666666666655543

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=95.41  E-value=5.9  Score=44.33  Aligned_cols=13  Identities=15%  Similarity=0.371  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHHH
Q 013958          235 AELERARLQVNQL  247 (433)
Q Consensus       235 ~EL~~Ar~~I~eL  247 (433)
                      .+++.++..+.++
T Consensus       684 ~~~~~l~~~l~~~  696 (1179)
T TIGR02168       684 EKIEELEEKIAEL  696 (1179)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.37  E-value=2.7  Score=49.04  Aligned_cols=175  Identities=17%  Similarity=0.241  Sum_probs=105.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHh
Q 013958          226 SMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLN  305 (433)
Q Consensus       226 ~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln  305 (433)
                      ...-+..+..++..++.+|++...-.+....+|.-+=+.+.+.+..+.++-.| ...-|+.++..++..++-=++.|..-
T Consensus       739 ~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkd-l~keik~~k~~~e~~~~~~ek~~~e~  817 (1174)
T KOG0933|consen  739 LLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKD-LEKEIKTAKQRAEESSKELEKRENEY  817 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456667777777777777776666666666666666666555544443333 33456667777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhH------
Q 013958          306 KKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVAD------  379 (433)
Q Consensus       306 ~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAE------  379 (433)
                      .+|.-|..+.+.+....-+.|+       -++.-|+.|..+|++.++.|.....+..++..|+.++..++.=-+      
T Consensus       818 e~l~lE~e~l~~e~~~~k~~l~-------~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~  890 (1174)
T KOG0933|consen  818 ERLQLEHEELEKEISSLKQQLE-------QLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGL  890 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhh
Confidence            7777777776665555444443       356667777777777777777777777777777766655543222      


Q ss_pred             hhhHHhhhhhhhHhhhhhhhhhHHHHHHH
Q 013958          380 VLREERAQIKLSEAKYQLEEKNAAVDKLR  408 (433)
Q Consensus       380 vWREERVQMKL~eAk~~leeK~s~ldkL~  408 (433)
                      .=..|-.+-+..+-++...++.-.++++.
T Consensus       891 ~~~~e~~~~e~~~~~l~~kkle~e~~~~~  919 (1174)
T KOG0933|consen  891 LTSQEKCLSEKSDGELERKKLEHEVTKLE  919 (1174)
T ss_pred             hhHHHHHHHHhhcccchHHHHHhHHHHhh
Confidence            11223334444444444444444444443

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=95.12  E-value=4.1  Score=48.41  Aligned_cols=115  Identities=15%  Similarity=0.162  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHH
Q 013958          234 HAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELA  313 (433)
Q Consensus       234 ~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELa  313 (433)
                      -.||+.+..+++-.+.|.+..+..+-.---+..+++++-...+..++.+-|..+++||++..+-..++-.-+.|+..+..
T Consensus       467 ~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk  546 (1317)
T KOG0612|consen  467 DKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRK  546 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            34566555555444444443111111111123345555555667888999999999999999999998888999998888


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 013958          314 ETKHSLLKAVKDLDTEKRARVVIEQVCDELARDIN  348 (433)
Q Consensus       314 E~K~s~~~alkelE~ERkaRellE~vCdELAk~I~  348 (433)
                      +...+..-+.-+.+.+.+-+...++.|..+-....
T Consensus       547 ~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e  581 (1317)
T KOG0612|consen  547 QLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE  581 (1317)
T ss_pred             HHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh
Confidence            88888888888999999999999999998766544

>PRK02224 chromosome segregation protein; Provisional

Probab=94.95  E-value=6.2  Score=44.05  Aligned_cols=33  Identities=9%  Similarity=0.168  Sum_probs=17.2

Q ss_pred             hhhhHHHHHHHHHHHHHHhhhcc--Ccccchhhhc
Q 013958          398 EEKNAAVDKLRSQLEAFSRNQKG--KRKRTQFCKS  430 (433)
Q Consensus       398 eeK~s~ldkL~~elE~FL~sk~~--~~~~~~~~~~  430 (433)
                      .++...+......++.+|..-..  ....-|.|..
T Consensus       425 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r  459 (880)
T PRK02224        425 REREAELEATLRTARERVEEAEALLEAGKCPECGQ  459 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence            34455555555566666665442  2334466653

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=94.67  E-value=11  Score=44.11  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=18.2

Q ss_pred             HhHhhhH-HhhhhhhhHhhhhhhhhhHHHHHHHHHHH
Q 013958          377 VADVLRE-ERAQIKLSEAKYQLEEKNAAVDKLRSQLE  412 (433)
Q Consensus       377 mAEvWRE-ERVQMKL~eAk~~leeK~s~ldkL~~elE  412 (433)
                      +.+.|++ ...|.++.++...+......++.|....+
T Consensus       462 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~  498 (1163)
T COG1196         462 LKELERELAELQEELQRLEKELSSLEARLDRLEAEQR  498 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4455554 34555555555555555555555554433

>PHA02562 46 endonuclease subunit; Provisional

Probab=94.36  E-value=7.7  Score=40.74  Aligned_cols=48  Identities=15%  Similarity=0.317  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHhhhcccHHHHHHHHH
Q 013958          312 LAETKHSLLKAVKDLDTEKRARVVIEQ--VCDELARDINDDKSEVEELKR  359 (433)
Q Consensus       312 LaE~K~s~~~alkelE~ERkaRellE~--vCdELAk~I~e~kaEve~lKr  359 (433)
                      |.+++.....+-.+++.-.+....++.  .|.---+.+.+....+..|..
T Consensus       257 L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d  306 (562)
T PHA02562        257 LNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKD  306 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHH
Confidence            444555555555566655666666644  554444444444333444333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=94.10  E-value=16  Score=43.04  Aligned_cols=59  Identities=15%  Similarity=0.138  Sum_probs=34.9

Q ss_pred             HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhH
Q 013958          208 ELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA  266 (433)
Q Consensus       208 ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kqla  266 (433)
                      +|.....+|-.+..+-.....-+..++.++..+...+.++.......+.+++.+-..++
T Consensus       668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  726 (1163)
T COG1196         668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA  726 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444445556667777777777777776666666666666665555

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=94.01  E-value=12  Score=41.35  Aligned_cols=130  Identities=24%  Similarity=0.305  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHH------H---HHHHHHHHHHHhHHHHHHhhhHHHH
Q 013958          234 HAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKERE------V---VEAAIESIAGELEVERKLRRRFESL  304 (433)
Q Consensus       234 ~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~e------k---i~aai~slk~ELe~ERk~Rrr~E~l  304 (433)
                      .+||-.||.-|.+-.+++-....+|..|--.+.+=|.-|-.++++      +   ....+-.+.+|+.-=++-.+.+|.-
T Consensus        91 e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e  170 (546)
T KOG0977|consen   91 EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDE  170 (546)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444433333333333333221      1   2345667777777777777888888


Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh----cccHHHHHHHHHHhHH
Q 013958          305 NKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDI----NDDKSEVEELKRESAI  363 (433)
Q Consensus       305 n~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I----~e~kaEve~lKres~k  363 (433)
                      ...|.+|..-....+..+.++|+.|.-.|.-++.=|..|-.+|    ..++.||+++++...+
T Consensus       171 ~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~r  233 (546)
T KOG0977|consen  171 LKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARR  233 (546)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence            8888888888888888888999999988888888887776665    4566777777665443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=93.85  E-value=21  Score=44.72  Aligned_cols=112  Identities=20%  Similarity=0.285  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHH--HHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhH
Q 013958          229 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEK--AAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNK  306 (433)
Q Consensus       229 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk--~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~  306 (433)
                      .++.|+..++.-..++.+|..-.....+++..|-+++.|..  .+--++.......-|++++.+|+.|-+.+--++...+
T Consensus      1246 ~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~ 1325 (1930)
T KOG0161|consen 1246 QLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALR 1325 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555666666666666666667777888999999987654  4445666777788899999999999999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q 013958          307 KLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDI  347 (433)
Q Consensus       307 KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I  347 (433)
                      .|-.|+...       ...||.+-..+..|+.---+...++
T Consensus      1326 ~l~~e~~~l-------~e~leee~e~~~~l~r~lsk~~~e~ 1359 (1930)
T KOG0161|consen 1326 QLEHELDLL-------REQLEEEQEAKNELERKLSKANAEL 1359 (1930)
T ss_pred             HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888875543       3345555555544444333333333

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.62  E-value=19  Score=42.49  Aligned_cols=221  Identities=14%  Similarity=0.198  Sum_probs=119.9

Q ss_pred             cccccccccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhch---HHHHHHHHHh
Q 013958          189 TVGVKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQ---SEISYLMKCF  265 (433)
Q Consensus       189 s~~~k~rlk~~~~~L~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~---~eie~l~Kql  265 (433)
                      ..++.|-|..-+.+-..+  +|--|.-+....       .-+.+.+.||++.-.+|+.|+.-.+-.+   .+++-.+..+
T Consensus       654 V~dP~GtlTGGs~~~~a~--~L~~l~~l~~~~-------~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l  724 (1174)
T KOG0933|consen  654 VYDPSGTLTGGSRSKGAD--LLRQLQKLKQAQ-------KELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHEL  724 (1174)
T ss_pred             eeCCCCcccCCCCCCccc--HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666664433333332  444444333111       3355666666666666666655444322   2333333333


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHH-------HhHHHHHHhhhHHHHhHH------------------HHHHHHHHHHHHH
Q 013958          266 AEEKAAWKNKEREVVEAAIESIAG-------ELEVERKLRRRFESLNKK------------------LGKELAETKHSLL  320 (433)
Q Consensus       266 aEEk~~wK~KE~eki~aai~slk~-------ELe~ERk~Rrr~E~ln~K------------------L~~ELaE~K~s~~  320 (433)
                      +=-+---..-+.-++-+.++.+.+       ++....+.=+..+.--..                  |.+||..+|.-+.
T Consensus       725 ~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e  804 (1174)
T KOG0933|consen  725 ALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAE  804 (1174)
T ss_pred             HHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHH
Confidence            332222223334444444444433       344444444443333222                  4556666666666


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhh
Q 013958          321 KAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEK  400 (433)
Q Consensus       321 ~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK  400 (433)
                      ..-+++|+-....+.|.--|++|-++|..++...+.+......+-.|+..=+-=+-=++.=. .-+|-.|.+-+.-+-+=
T Consensus       805 ~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~-~~~~~el~~~k~k~~~~  883 (1174)
T KOG0933|consen  805 ESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDV-KKAQAELKDQKAKQRDI  883 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH-HHHHHHHHHHHHHHHhh
Confidence            66677777777788888899999999999988888887776655444432211111111111 23455566666666666


Q ss_pred             hHHHHHHHHHHHHHHhhhc
Q 013958          401 NAAVDKLRSQLEAFSRNQK  419 (433)
Q Consensus       401 ~s~ldkL~~elE~FL~sk~  419 (433)
                      +..++.+..+.|.|+..+.
T Consensus       884 dt~i~~~~~~~e~~~~e~~  902 (1174)
T KOG0933|consen  884 DTEISGLLTSQEKCLSEKS  902 (1174)
T ss_pred             hHHHhhhhhHHHHHHHHhh
Confidence            6777888888888888765

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=92.98  E-value=17  Score=40.11  Aligned_cols=24  Identities=42%  Similarity=0.465  Sum_probs=12.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh
Q 013958          228 SLVSALHAELERARLQVNQLIQEQ  251 (433)
Q Consensus       228 Slv~aL~~EL~~Ar~~I~eL~~E~  251 (433)
                      .-|..|+.+|.+++....+|..+.
T Consensus       171 ~~v~~l~~eL~~~~ee~e~L~~~~  194 (546)
T PF07888_consen  171 EEVERLEAELEQEEEEMEQLKQQQ  194 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555554443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=92.81  E-value=2.4  Score=47.12  Aligned_cols=123  Identities=23%  Similarity=0.296  Sum_probs=78.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHH
Q 013958          223 PSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFE  302 (433)
Q Consensus       223 ~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E  302 (433)
                      -++-.+.|+.+-.||+.|+.+|..|++|.       ++|.-|++...-.-+...-+-|.    .+..-|..       .+
T Consensus       230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~-------e~L~~ql~~~N~~~~~~~~~~i~----~~~~~L~~-------kd  291 (629)
T KOG0963|consen  230 VAAKAAEVSLIMTELEDAQQRIVFLEREV-------EQLREQLAKANSSKKLAKIDDID----ALGSVLNQ-------KD  291 (629)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhhhhccCCchH----HHHHHHhH-------HH
Confidence            34556789999999999999999998875       56666666554333322112222    23333333       78


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hhhcccHHHHHHHHHH--hHHHHHHHHHhHHHHH
Q 013958          303 SLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELA---RDINDDKSEVEELKRE--SAIALEEVEKEREMIQ  376 (433)
Q Consensus       303 ~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELA---k~I~e~kaEve~lKre--s~k~~eE~eeER~MLq  376 (433)
                      ++|.+|..++-..+.|+..             .+|..|.++.   ++...+..++++|+.+  +...++|+..|-.+|+
T Consensus       292 ~~i~~L~~di~~~~~S~~~-------------e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk  357 (629)
T KOG0963|consen  292 SEIAQLSNDIERLEASLVE-------------EREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILK  357 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence            8899998888877777654             4444554443   3344555666666665  3356667777777775

>PRK11637 AmiB activator; Provisional

Probab=92.40  E-value=12  Score=38.92  Aligned_cols=25  Identities=16%  Similarity=0.327  Sum_probs=12.5

Q ss_pred             HHHHHhhhcccHHHHHHHHHHhHHH
Q 013958          340 CDELARDINDDKSEVEELKRESAIA  364 (433)
Q Consensus       340 CdELAk~I~e~kaEve~lKres~k~  364 (433)
                      -+.|...+.++.+++..|+++..++
T Consensus       221 l~~L~~~~~~~~~~l~~l~~~~~~L  245 (428)
T PRK11637        221 LTGLESSLQKDQQQLSELRANESRL  245 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555555555544443

>PRK02224 chromosome segregation protein; Provisional

Probab=92.04  E-value=24  Score=39.53  Aligned_cols=15  Identities=13%  Similarity=0.231  Sum_probs=7.2

Q ss_pred             chHHHHHHHHhhcCC
Q 013958          205 TSKELLKIINRMWGQ  219 (433)
Q Consensus       205 TS~ELlkvlnriw~l  219 (433)
                      +.++-..++..|-++
T Consensus       147 ~p~~R~~ii~~l~~l  161 (880)
T PRK02224        147 TPSDRQDMIDDLLQL  161 (880)
T ss_pred             CHHHHHHHHHHHhCC
Confidence            344555555555443

>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []

Probab=91.23  E-value=6.5  Score=34.82  Aligned_cols=54  Identities=20%  Similarity=0.117  Sum_probs=33.6

Q ss_pred             HHHHHHHHhhcCCCCCC------CcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 013958          207 KELLKIINRMWGQEDRP------SSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISY  260 (433)
Q Consensus       207 ~ELlkvlnriw~leeq~------~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~  260 (433)
                      +-|+|.+..+-.+.+..      ...-.+.-.+..+|+.+...+..+..=..++..++++
T Consensus        19 ~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~   78 (139)
T PF05615_consen   19 KRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKREREN   78 (139)
T ss_pred             HHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666665555432      2344566777778888887777776666665555444

This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=91.01  E-value=14  Score=42.63  Aligned_cols=99  Identities=19%  Similarity=0.240  Sum_probs=63.2

Q ss_pred             cccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhH
Q 013958          197 KDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKE  276 (433)
Q Consensus       197 k~~~~~L~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE  276 (433)
                      .-..--++.|.+..+||+++.   |...--+|-+..+--+||.+=..|+--.--+.....+.+.+++...+=-..--+|+
T Consensus       840 ~K~~~l~kns~k~~ei~s~lk---e~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~  916 (1259)
T KOG0163|consen  840 RKINALLKNSLKTIEILSRLK---EGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKE  916 (1259)
T ss_pred             HHHHHHHHhhHHHHHHHHHHh---cchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            334455778889999999985   34445566778888888888888874333344445566666665544333333455


Q ss_pred             HHHHHH--HHHHHHHHhHHHHHHh
Q 013958          277 REVVEA--AIESIAGELEVERKLR  298 (433)
Q Consensus       277 ~eki~a--ai~slk~ELe~ERk~R  298 (433)
                      +.-|..  .++.+.+.+|.||+-|
T Consensus       917 ~q~~~e~er~rk~qE~~E~ER~rr  940 (1259)
T KOG0163|consen  917 QQQIEELERLRKIQELAEAERKRR  940 (1259)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            544443  3566777888888754

>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1)

Probab=90.23  E-value=3.9  Score=39.54  Aligned_cols=150  Identities=20%  Similarity=0.330  Sum_probs=77.7

Q ss_pred             hHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhh-hhHHHHHHHHH
Q 013958          206 SKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWK-NKEREVVEAAI  284 (433)
Q Consensus       206 S~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK-~KE~eki~aai  284 (433)
                      -+|||+.|+=+=  +|-++-++ +|.+|++|-      ++.++.|.+=-...+.+-+.-|--|-.+-. ..+.+   ++.
T Consensus        12 k~dLL~LLsilE--GELqARD~-vI~~Lkaer------~~~~~~e~~Yg~~~~~dp~~ALqRD~~~~~~~~~~~---~v~   79 (192)
T PF09727_consen   12 KDDLLKLLSILE--GELQARDV-VIAMLKAER------KKVFLLEARYGFYNPNDPFLALQRDSEAAGGEKEEE---DVY   79 (192)
T ss_pred             HHHHHHHHHHHH--HHHHHHHH-HHHHHHHhh------hhHHHHHHHHcCCCcCcHHHHHHhHHHhcCCCCccC---cch
Confidence            478998888764  55566554 678887762      233333332111112222222222211111 01111   112


Q ss_pred             HHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHhhhcccHHH
Q 013958          285 ESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVV-----------IEQVCDELARDINDDKSE  353 (433)
Q Consensus       285 ~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRel-----------lE~vCdELAk~I~e~kaE  353 (433)
                      ..=-.+|+   ++--+--..+.|+..-|+.+...-.+.+.|||.|++...-           ||.-.+.|-+.|.-.++.
T Consensus        80 ~~pl~~Le---~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~  156 (192)
T PF09727_consen   80 ENPLAELE---KLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQ  156 (192)
T ss_pred             hhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222232   2333444567889999999999999999999999998764           444444444444444444


Q ss_pred             HHHHHHHhHHHHHHHHH
Q 013958          354 VEELKRESAIALEEVEK  370 (433)
Q Consensus       354 ve~lKres~k~~eE~ee  370 (433)
                      +..+-++..+....+++
T Consensus       157 ~~~~EkE~~K~~~~l~e  173 (192)
T PF09727_consen  157 QKKLEKEHKKLVSQLEE  173 (192)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444443333333

In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].

>PRK09039 hypothetical protein; Validated

Probab=90.11  E-value=25  Score=36.21  Aligned_cols=154  Identities=18%  Similarity=0.235  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHH
Q 013958          230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLG  309 (433)
Q Consensus       230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~  309 (433)
                      |+.+..||+...++|.+|-.--..++.                   ....+...|..++.+|+.=+..|-++|.....+.
T Consensus        48 i~~~~~eL~~L~~qIa~L~e~L~le~~-------------------~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~  108 (343)
T PRK09039         48 ISGKDSALDRLNSQIAELADLLSLERQ-------------------GNQDLQDSVANLRASLSAAEAERSRLQALLAELA  108 (343)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            788999999999999884432222221                   2344455555566666655555556666554443


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhh
Q 013958          310 KELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIK  389 (433)
Q Consensus       310 ~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAEvWREERVQMK  389 (433)
                      ....+.+..+...-.+|..++       .+-.|--..|.-.+++|++||.....+..+++.=....      .+-++|+.
T Consensus       109 ~~~~~~~~~~~~l~~~L~~~k-------~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~------~~~~~~i~  175 (343)
T PRK09039        109 GAGAAAEGRAGELAQELDSEK-------QVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD------RESQAKIA  175 (343)
T ss_pred             hhcchHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence            333333333333322222222       22333344455556666666666555544433211111      22222222


Q ss_pred             hhHhh--hhhhhhhHHHHHHHHHHHHHH
Q 013958          390 LSEAK--YQLEEKNAAVDKLRSQLEAFS  415 (433)
Q Consensus       390 L~eAk--~~leeK~s~ldkL~~elE~FL  415 (433)
                      -...+  .++.+|...|.+++.++..=|
T Consensus       176 ~L~~~L~~a~~~~~~~l~~~~~~~~~~l  203 (343)
T PRK09039        176 DLGRRLNVALAQRVQELNRYRSEFFGRL  203 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            22222  234456667777777774333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=89.93  E-value=32  Score=37.23  Aligned_cols=135  Identities=26%  Similarity=0.372  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHH---HHHHHhhhc
Q 013958          276 EREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLD----TEKRARVVIEQV---CDELARDIN  348 (433)
Q Consensus       276 E~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE----~ERkaRellE~v---CdELAk~I~  348 (433)
                      |-..++..+.+|+.||+.++..-.++..--....-.....+.-+.++..+|+    .+.+++..+.++   -+++..+..
T Consensus       303 E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae  382 (522)
T PF05701_consen  303 EASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAE  382 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHH
Confidence            3445666677777777666543322211111111111122222222222332    233344333222   234444455


Q ss_pred             ccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 013958          349 DDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQ  418 (433)
Q Consensus       349 e~kaEve~lKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~FL~sk  418 (433)
                      +-+.+.+.++.+..+++.|++.=+-.+.-++        +||..|.-.++.-.+.-.....+|.+.-.+.
T Consensus       383 ~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E--------~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~  444 (522)
T PF05701_consen  383 EAKKEAEEAKEEVEKAKEEAEQTKAAIKTAE--------ERLEAALKEAEAAKASEALALAEIKALSESE  444 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            5566666666666677777777777776665        5666666666655566666777777754443

Several sequences in this family are described as being myosin heavy chain-like.

>PRK03918 chromosome segregation protein; Provisional

Probab=89.75  E-value=38  Score=37.81  Aligned_cols=19  Identities=21%  Similarity=0.487  Sum_probs=14.0

Q ss_pred             hhchHHHHHHHHhhcCCCC
Q 013958          203 LTTSKELLKIINRMWGQED  221 (433)
Q Consensus       203 L~TS~ELlkvlnriw~lee  221 (433)
                      +++.++..++|.+|-+++.
T Consensus       141 ~~~~~~r~~~~~~~~~~~~  159 (880)
T PRK03918        141 LESDESREKVVRQILGLDD  159 (880)
T ss_pred             hcCcHHHHHHHHHHhCCHH
Confidence            4567888888888876644

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=89.55  E-value=49  Score=38.78  Aligned_cols=121  Identities=19%  Similarity=0.205  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhh-----------hHHHHhHHH
Q 013958          240 ARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRR-----------RFESLNKKL  308 (433)
Q Consensus       240 Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rr-----------r~E~ln~KL  308 (433)
                      ....|.|+--..+..-++|+.-|+++.--.. -=.+|.--....|..++.||+.+++.|-           =++..|.||
T Consensus       250 ~~s~i~E~d~~lq~sak~ieE~m~qlk~kns-~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkl  328 (1265)
T KOG0976|consen  250 TCSMIEEQDMDLQASAKEIEEKMRQLKAKNS-VLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKL  328 (1265)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            3445555555555555555555554432111 1123444445668889999999998664           467889999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HhhhcccHHHHHHHHHHh
Q 013958          309 GKELAETKHSLLKAVKDLDTEKRARVVIEQVCDEL---ARDINDDKSEVEELKRES  361 (433)
Q Consensus       309 ~~ELaE~K~s~~~alkelE~ERkaRellE~vCdEL---Ak~I~e~kaEve~lKres  361 (433)
                      .++.+++..++..+...+|-=-.-+.=||+--|++   |+-|.+.+.-|+++++..
T Consensus       329 trqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL  384 (1265)
T KOG0976|consen  329 TRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSL  384 (1265)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            99999988877666544443333333333333332   344555555555555443

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=89.14  E-value=23  Score=34.37  Aligned_cols=74  Identities=22%  Similarity=0.355  Sum_probs=45.5

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhh-HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013958          269 KAAWKNKEREVVEAAIESIAGELEVERKLRRR-FESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELA  344 (433)
Q Consensus       269 k~~wK~KE~eki~aai~slk~ELe~ERk~Rrr-~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELA  344 (433)
                      +..-=+.--+.+..-|..|...+..|+.-|.. .|.++..|+++|.+...+|..-..  .++.+...++..++|.+.
T Consensus        86 ~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~--~R~erE~~i~krl~e~~~  160 (247)
T PF06705_consen   86 KQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERN--EREEREENILKRLEEEEN  160 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            33333344455566677788888888887766 788888899988887766554221  122223345555555443

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=88.35  E-value=21  Score=33.09  Aligned_cols=66  Identities=20%  Similarity=0.431  Sum_probs=46.1

Q ss_pred             HHhhhHHHHhHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHH
Q 013958          296 KLRRRFESLNKKLGKELAETKHSLLK-------AVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAI  363 (433)
Q Consensus       296 k~Rrr~E~ln~KL~~ELaE~K~s~~~-------alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k  363 (433)
                      ++++.++.++.+|..|+..++..++-       -+++.......+  +.++-.++..+|.+.+.++|.+|-+..+
T Consensus        84 ~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~k--i~e~~~ki~~ei~~lr~~iE~~K~~~lr  156 (177)
T PF07798_consen   84 KLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELK--IQELNNKIDTEIANLRTEIESLKWDTLR  156 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57777888888888888777775543       223333332222  7888888999999999999988876554

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=87.99  E-value=66  Score=38.29  Aligned_cols=56  Identities=20%  Similarity=0.192  Sum_probs=42.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHH
Q 013958          226 SMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVE  281 (433)
Q Consensus       226 ~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~  281 (433)
                      .-.-+..++.++.+++..++......+..+.+.+.+-.++.+++...+.+-...+.
T Consensus       633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  688 (1201)
T PF12128_consen  633 INKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLN  688 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678889999999999998888888888888877777777777776665555444

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=87.72  E-value=48  Score=39.92  Aligned_cols=62  Identities=19%  Similarity=0.160  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHH
Q 013958          308 LGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVE  369 (433)
Q Consensus       308 L~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~e  369 (433)
                      .--||...+.....+++.+|.-+.+=.-+..--+|-.-+|.+.+.++..+|.|...+..++.
T Consensus       505 aesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~  566 (1293)
T KOG0996|consen  505 AESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELP  566 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHH
Confidence            34466667777777888888888877777777888888899999999998888776655543

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=87.50  E-value=66  Score=37.79  Aligned_cols=80  Identities=26%  Similarity=0.362  Sum_probs=61.6

Q ss_pred             hhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHhhhcccHHHHHHHHHHhH---H
Q 013958          298 RRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA-----------RVVIEQVCDELARDINDDKSEVEELKRESA---I  363 (433)
Q Consensus       298 Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERka-----------RellE~vCdELAk~I~e~kaEve~lKres~---k  363 (433)
                      .+.++.-|..|++||++-..-++-.-.+|+.++++           +..++.---++.++|.+...++-+-|++.+   .
T Consensus       272 m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfdd  351 (1265)
T KOG0976|consen  272 MRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDD  351 (1265)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence            45688899999999998776666666677777764           456777788888998888888888777754   4


Q ss_pred             HHHHHHHhHHHHHH
Q 013958          364 ALEEVEKEREMIQV  377 (433)
Q Consensus       364 ~~eE~eeER~MLqm  377 (433)
                      .+.|+|++|-|+-|
T Consensus       352 k~~eLEKkrd~al~  365 (1265)
T KOG0976|consen  352 KLNELEKKRDMALM  365 (1265)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55689999988855

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.38  E-value=6.6  Score=39.89  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=28.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHH
Q 013958          324 KDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALE  366 (433)
Q Consensus       324 kelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~e  366 (433)
                      +|-+...+.=+-+|+-++++.++|.+.+.|...+..+-.+.|.
T Consensus        57 ~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~   99 (314)
T PF04111_consen   57 QEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWR   99 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444557777888888888888888887766554444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=85.85  E-value=21  Score=42.18  Aligned_cols=54  Identities=24%  Similarity=0.337  Sum_probs=31.0

Q ss_pred             hhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 013958          299 RRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKR  359 (433)
Q Consensus       299 rr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKr  359 (433)
                      ..+|.++..|..|+-++       ..++..+.....-++.--+.|.+-|..+..++..|+.
T Consensus       411 ek~e~~~~~L~~e~~~~-------~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~  464 (1074)
T KOG0250|consen  411 EKLEEQINSLREELNEV-------KEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK  464 (1074)
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444444444443       3344445555666666666777777777777776665

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=85.77  E-value=25  Score=37.58  Aligned_cols=166  Identities=25%  Similarity=0.372  Sum_probs=85.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhchH---HHHHHHHHhHHHHHH------hhhhHHHHHHHHHHHHHHHhHHHHH
Q 013958          226 SMSLVSALHAELERARLQVNQLIQEQRSDQS---EISYLMKCFAEEKAA------WKNKEREVVEAAIESIAGELEVERK  296 (433)
Q Consensus       226 ~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~---eie~l~KqlaEEk~~------wK~KE~eki~aai~slk~ELe~ERk  296 (433)
                      ..|++.|+..   +-|--|+.|+.+++..-.   +=|+|.-+|.-|+-.      +..-|..|..-+-+-|--.|+.||+
T Consensus       105 ~~s~LaAaE~---khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~  181 (561)
T KOG1103|consen  105 AASLLAAAEK---KHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKK  181 (561)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555432   345567777777765322   223333333333211      1111222333333445566777765


Q ss_pred             HhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------------HhhhcccHHHHHHHHHHhH
Q 013958          297 LRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDEL--------------ARDINDDKSEVEELKRESA  362 (433)
Q Consensus       297 ~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdEL--------------Ak~I~e~kaEve~lKres~  362 (433)
                         |-|.+..-|.-|   -|.++.+   --|.-.|+-+||=++-.+=              -+|+ ..++.||       
T Consensus       182 ---RHeqis~mLilE---cKka~~K---aaEegqKA~ei~Lklekdksr~~k~eee~aaERergl-qteaqve-------  244 (561)
T KOG1103|consen  182 ---RHEQISLMLILE---CKKALLK---AAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGL-QTEAQVE-------  244 (561)
T ss_pred             ---HHHHHHHHHHHH---HHHHHHH---HHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhcc-chHHHHH-------
Confidence               344555555544   3333333   3445556666654443322              1221 1233343       


Q ss_pred             HHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhc
Q 013958          363 IALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQK  419 (433)
Q Consensus       363 k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~FL~sk~  419 (433)
                      +..+|++.||..|+ |+.=|+|.-|--       |-+-+.-|.+...++|+-+..-+
T Consensus       245 k~i~EfdiEre~LR-Ael~ree~r~K~-------lKeEmeSLkeiVkdlEA~hQh~~  293 (561)
T KOG1103|consen  245 KLIEEFDIEREFLR-AELEREEKRQKM-------LKEEMESLKEIVKDLEADHQHLR  293 (561)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhhhhcC
Confidence            56678888998886 778888877733       33345556666677777665433

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=84.85  E-value=59  Score=36.80  Aligned_cols=137  Identities=23%  Similarity=0.262  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHH
Q 013958          275 KEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEV  354 (433)
Q Consensus       275 KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEv  354 (433)
                      |+.++...-+-.+..+|+..+...-+.+..=..    +.+.+..|..-+..|..-+..-.-++.+|+-.-+.|...++++
T Consensus       175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~----~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l  250 (670)
T KOG0239|consen  175 KESLKLESDLGDLVTELEHVTNSISELESVLKS----AQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQEL  250 (670)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence            344555555555666665555444333222111    2223333333333455555666677888888888899999999


Q ss_pred             HHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhh-hhhhhHhhhhhhhhh---HHHHHHHHHHHHHHhh
Q 013958          355 EELKRESAIALEEVEKEREMIQVADVLREERA-QIKLSEAKYQLEEKN---AAVDKLRSQLEAFSRN  417 (433)
Q Consensus       355 e~lKres~k~~eE~eeER~MLqmAEvWREERV-QMKL~eAk~~leeK~---s~ldkL~~elE~FL~s  417 (433)
                      ..|+.+...+.+++.+-..+  +.+.|..-+. |-.|.++...|-+|+   .+--+|.++|..+...
T Consensus       251 ~~l~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGn  315 (670)
T KOG0239|consen  251 EELKAELKELNDQVSLLTRE--VQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGN  315 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99998887776554443333  5577888777 456778888888898   7778888888776543

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=84.79  E-value=31  Score=31.46  Aligned_cols=93  Identities=28%  Similarity=0.369  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHH-------HHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHH
Q 013958          230 VSALHAELERARLQ-------VNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFE  302 (433)
Q Consensus       230 v~aL~~EL~~Ar~~-------I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E  302 (433)
                      +.+|++|.+-|..+       |++|..+.-...++|..|-+++.-=     -.+-|++...|..++..|+.--+....+|
T Consensus         2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~l-----E~eld~~~~~l~~~k~~lee~~~~~~~~E   76 (143)
T PF12718_consen    2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQL-----EEELDKLEEQLKEAKEKLEESEKRKSNAE   76 (143)
T ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence            35677777666555       5555555555566677775544321     12478999999999999999999999999


Q ss_pred             HHhHHHH---HHHHHHHHHHHHHHhHHH
Q 013958          303 SLNKKLG---KELAETKHSLLKAVKDLD  327 (433)
Q Consensus       303 ~ln~KL~---~ELaE~K~s~~~alkelE  327 (433)
                      .+|+|+.   .||..+...+.-+...|.
T Consensus        77 ~l~rriq~LEeele~ae~~L~e~~ekl~  104 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEAEKKLKETTEKLR  104 (143)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999964   566666555555554444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=84.23  E-value=35  Score=31.65  Aligned_cols=93  Identities=24%  Similarity=0.298  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHh-HHHHHHhhhHHHHh
Q 013958          228 SLVSALHAELERAR-LQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL-EVERKLRRRFESLN  305 (433)
Q Consensus       228 Slv~aL~~EL~~Ar-~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~EL-e~ERk~Rrr~E~ln  305 (433)
                      +-++.|+.|+...+ .++..|..+...-+.+++.|-.+|.+|-.-    -+.-++--+..-|.++ +.......+...+|
T Consensus        58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~----l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~  133 (177)
T PF07798_consen   58 AAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINK----LRAEVKLDLNLEKGRIREEQAKQELKIQELN  133 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            45666777776544 556667777777777777777777666211    1111111122222222 12234556788899


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 013958          306 KKLGKELAETKHSLLKAVK  324 (433)
Q Consensus       306 ~KL~~ELaE~K~s~~~alk  324 (433)
                      .|+..|++.+++.+..+.-
T Consensus       134 ~ki~~ei~~lr~~iE~~K~  152 (177)
T PF07798_consen  134 NKIDTEIANLRTEIESLKW  152 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999988887665433

>TIGR00606 rad50 rad50

Probab=83.14  E-value=1.1e+02  Score=36.64  Aligned_cols=37  Identities=8%  Similarity=0.022  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHH
Q 013958          231 SALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAE  267 (433)
Q Consensus       231 ~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaE  267 (433)
                      ..|..++...+..|.++..+......+++.+...+.+
T Consensus       891 ~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  927 (1311)
T TIGR00606       891 VELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE  927 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=82.75  E-value=60  Score=33.16  Aligned_cols=67  Identities=25%  Similarity=0.349  Sum_probs=42.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhH
Q 013958          323 VKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNA  402 (433)
Q Consensus       323 lkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s  402 (433)
                      ..|+-+---++.-||.+|.||-+.....+.|...+-++-...|.|+              .+..|.-|.|....+++.+.
T Consensus        63 ~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el--------------~~kFq~~L~dIq~~~ee~~~  128 (309)
T PF09728_consen   63 QSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKEL--------------SEKFQATLKDIQAQMEEQSE  128 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhccc
Confidence            3344455567889999999999998777766655544433333332              24556666666666555543


Q ss_pred             H
Q 013958          403 A  403 (433)
Q Consensus       403 ~  403 (433)
                      .
T Consensus       129 ~  129 (309)
T PF09728_consen  129 R  129 (309)
T ss_pred             h
Confidence            3

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology

Probab=82.70  E-value=75  Score=34.28  Aligned_cols=44  Identities=18%  Similarity=0.307  Sum_probs=26.5

Q ss_pred             HHHHHHHHhhcCC-CCCCC---cchhHHHHHHHHHHHHHHHHHHHHHH
Q 013958          207 KELLKIINRMWGQ-EDRPS---SSMSLVSALHAELERARLQVNQLIQE  250 (433)
Q Consensus       207 ~ELlkvlnriw~l-eeq~~---s~~Slv~aL~~EL~~Ar~~I~eL~~E  250 (433)
                      .+|..++|.+... .+...   ..-++|...+.+++....+|.+|..+
T Consensus       226 ~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~  273 (582)
T PF09731_consen  226 QELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEE  273 (582)
T ss_pred             HHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999988632 22222   34456666666666666655555443

Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=82.01  E-value=48  Score=31.57  Aligned_cols=92  Identities=18%  Similarity=0.278  Sum_probs=67.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhc----------------hHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013958          227 MSLVSALHAELERARLQVNQLIQEQRSD----------------QSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGE  290 (433)
Q Consensus       227 ~Slv~aL~~EL~~Ar~~I~eL~~E~~s~----------------~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~E  290 (433)
                      ..||..|++.+.+-+.++.+|++--.+.                -.+|+.++.+|.||+.  ++   +.+...-.-+++.
T Consensus        15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqq--R~---~~L~qvN~lLReQ   89 (182)
T PF15035_consen   15 AQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQ--RS---EELAQVNALLREQ   89 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHH--hH---HHHHHHHHHHHHH
Confidence            3689999999999999999998866322                2568899999999974  33   3334444556777


Q ss_pred             hHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 013958          291 LEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEK  330 (433)
Q Consensus       291 Le~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ER  330 (433)
                      ||..+       ..|..|..||.-+...+..+..+|+...
T Consensus        90 LEq~~-------~~N~~L~~dl~klt~~~~~l~~eL~~ke  122 (182)
T PF15035_consen   90 LEQAR-------KANEALQEDLQKLTQDWERLRDELEQKE  122 (182)
T ss_pred             HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77655       4688888888888888887777776543

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=81.82  E-value=0.34  Score=54.98  Aligned_cols=143  Identities=22%  Similarity=0.304  Sum_probs=0.0

Q ss_pred             HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHH-HHHHhhh--hHHHHHHHHH
Q 013958          208 ELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAE-EKAAWKN--KEREVVEAAI  284 (433)
Q Consensus       208 ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaE-Ek~~wK~--KE~eki~aai  284 (433)
                      +|=-..+..-.++|..--.+.-+..|..||-.-|.++.+|+..+......|..|--+|.+ |-.+.++  +.--+..+-|
T Consensus       673 eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri  752 (859)
T PF01576_consen  673 ELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARI  752 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHH
Confidence            444455555566777777788899999999999999999999999999999999888876 3334444  5666788889


Q ss_pred             HHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 013958          285 ESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEEL  357 (433)
Q Consensus       285 ~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~l  357 (433)
                      ..|-.+|+.|.+-+..+...++|+-+=|.|+-       -.+|.+|+.-.-+-++||.|-.-|..||..+++.
T Consensus       753 ~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~-------~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eea  818 (859)
T PF01576_consen  753 RELEEELESEQRRRAEAQKQLRKLERRVKELQ-------FQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEA  818 (859)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            99999999999999999999999988776643       3578899999999999999999999998888754

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=81.05  E-value=1.1e+02  Score=35.26  Aligned_cols=111  Identities=28%  Similarity=0.383  Sum_probs=64.7

Q ss_pred             hhHHHHhHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHH----
Q 013958          299 RRFESLNKKLGKELAETKHSLL-------KAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEE----  367 (433)
Q Consensus       299 rr~E~ln~KL~~ELaE~K~s~~-------~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE----  367 (433)
                      ..+|..+++|-.|+.-.++-+.       .-.+++|-.+-....|-.=||.+..+++.-++|+.+|..+..-.-..    
T Consensus       241 ~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~  320 (775)
T PF10174_consen  241 ASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDM  320 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            3456666666666666655222       22356777777777777779999999999988888777664422111    


Q ss_pred             -------------HHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHH
Q 013958          368 -------------VEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEA  413 (433)
Q Consensus       368 -------------~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~  413 (433)
                                   .+.+..||| +||   |+++-+|.++...++.|...+..+..|+..
T Consensus       321 r~hi~~lkesl~~ke~~~~~Lq-sdv---e~Lr~rle~k~~~l~kk~~~~~~~qeE~~~  375 (775)
T PF10174_consen  321 RQHIEVLKESLRAKEQEAEMLQ-SDV---EALRFRLEEKNSQLEKKQAQIEKLQEEKSR  375 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         123333443 232   445555555555555555555555554443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=80.74  E-value=80  Score=33.31  Aligned_cols=69  Identities=22%  Similarity=0.227  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHH---HHHHhHHHHH
Q 013958          308 LGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALE---EVEKEREMIQ  376 (433)
Q Consensus       308 L~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~e---E~eeER~MLq  376 (433)
                      +..++.+.+..+.....+++.-.+.+..++.--.+|-..+.+...++..+..+...+..   +++.|+.+..
T Consensus       335 ~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~  406 (562)
T PHA02562        335 QSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRG  406 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455545555445555444444455555555555555555555555554444433   3455555543

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=80.36  E-value=1.2e+02  Score=35.09  Aligned_cols=41  Identities=29%  Similarity=0.335  Sum_probs=32.9

Q ss_pred             HHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHh
Q 013958          340 CDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADV  380 (433)
Q Consensus       340 CdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAEv  380 (433)
                      |-+|...|...+.+|...+.++.+.+.|||.=+.||+-+|.
T Consensus       543 ~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~  583 (775)
T PF10174_consen  543 NAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAEN  583 (775)
T ss_pred             CHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44666778888889999999999999888877777877764

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=80.19  E-value=1.4e+02  Score=35.79  Aligned_cols=31  Identities=23%  Similarity=0.367  Sum_probs=25.3

Q ss_pred             hHHhhhhhhhHhhhhhhhhhHHHHHHHHHHH
Q 013958          382 REERAQIKLSEAKYQLEEKNAAVDKLRSQLE  412 (433)
Q Consensus       382 REERVQMKL~eAk~~leeK~s~ldkL~~elE  412 (433)
                      ++.-.||-+.+++..+++|+..+..|...|.
T Consensus       412 ~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~  442 (1200)
T KOG0964|consen  412 QENILQKEIEDLESELKEKLEEIKELESSIN  442 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence            4566899999999999999988887776664

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=80.12  E-value=57  Score=31.18  Aligned_cols=70  Identities=24%  Similarity=0.296  Sum_probs=30.9

Q ss_pred             HHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHH
Q 013958          340 CDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQ  410 (433)
Q Consensus       340 CdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~e  410 (433)
                      |+.|-..|...+.+++..+.+....++.++.-+..|. +-.=..+..+..+.+....+.+....+..+...
T Consensus        72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  141 (302)
T PF10186_consen   72 LERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS-ASQDLVESRQEQLEELQNELEERKQRLSQLQSQ  141 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444445555555555 222222334444444444444444444443333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	433
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 38/196 (19%), Positives = 80/196 (40%), Gaps = 13/196 (6%)

Query: 230  VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA--EEKAAWKNKEREVVEAAIESI 287
            +  +  ++     Q N+L +E++  +  +S L    A  EEKA    K +   E+ I  +
Sbjct: 985  IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL 1044

Query: 288  AGELEVERKLRRRFESLNKKLGKELAETKH---SLLKAVKDLDTEKRARV----VIEQVC 340
               L+ E K R+  E + +KL  E ++       L   + +L  +   +           
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARL 1104

Query: 341  DELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEK 400
            ++     N+   ++ EL+   +   E++E E+     A+  + + ++ +L   K +LE+ 
Sbjct: 1105 EDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSE-ELEALKTELEDT 1163

Query: 401  ---NAAVDKLRSQLEA 413
                A   +LR     
Sbjct: 1164 LDTTATQQELRGSDYK 1179

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 32/186 (17%), Positives = 79/186 (42%), Gaps = 10/186 (5%)

Query: 229  LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVV--EAAIES 286
            ++  + A +E    +  QL  E++  Q ++  L +   EE+AA +  + E V  +  I+ 
Sbjct: 928  ILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987

Query: 287  IAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARD 346
            +  ++ +      +     K L + +++   +L +  +      + +   E +  EL   
Sbjct: 988  MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVR 1047

Query: 347  INDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDK 406
            +  ++   +EL++       ++E E   +      +    Q +++E K QL +K   +  
Sbjct: 1048 LKKEEKSRQELEK----IKRKLEGESSDLHE----QIAELQAQIAELKAQLAKKEEELQA 1099

Query: 407  LRSQLE 412
              ++LE
Sbjct: 1100 ALARLE 1105

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 53.7 bits (129), Expect = 8e-08
 Identities = 29/193 (15%), Positives = 76/193 (39%), Gaps = 6/193 (3%)

Query: 236  ELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVER 295
            +      +   L+QE+   ++E+       AEE       +++ +E  +  +   +E E 
Sbjct: 885  QKHTQLCEEKNLLQEKLQAETELY----AEAEEMRVRLAAKKQELEEILHEMEARIEEEE 940

Query: 296  KLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVE 355
            +  ++ ++  KK+ +++ + +  L +        +  +V  +    ++  DI   + +  
Sbjct: 941  ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNN 1000

Query: 356  ELKRESAIALEEVEKEREMIQVADVLREE--RAQIKLSEAKYQLEEKNAAVDKLRSQLEA 413
            +L +E  +  E V      +   +   +   + + K      +LE +    +K R +LE 
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060

Query: 414  FSRNQKGKRKRTQ 426
              R  +G+     
Sbjct: 1061 IKRKLEGESSDLH 1073

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 2/114 (1%)

Query: 231  SALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKN--KEREVVEAAIESIA 288
            S LH ++   + Q+ +L  +    + E+   +    +E +   N  K+   +E+ I  + 
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129

Query: 289  GELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDE 342
             +LE E+  R + E   + L +EL   K  L   +    T++  R    +  D+
Sbjct: 1130 EDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 65/434 (14%), Positives = 122/434 (28%), Gaps = 127/434 (29%)

Query: 1   MSRQQNQTQNFFPGKIRK------RGCSSSASSTSSIVQNYRFKRAILIGKRGGGGGSAT 54
           +S+Q+   Q F    +R           +     S + + Y  +R  L            
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN----DNQVFA 127

Query: 55  PVPTWR----------LMRTTPS-------------SVLRA-------IDSQSEYGGF-- 82
                R          L+   P+             + +         +  + ++  F  
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 83  ----VNKAKQHQLQLQQQHQHSQQPVSARKLAATLWEMNEMPSPKLRETSGGGGYDERRI 138
                N  +     LQ+         ++R         +   + KLR  S      +  +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSR--------SDHSSNIKLRIHSI-----QAEL 234

Query: 139 RREARARERERERVTRSLHSGSLPPHLSDPSHSPVSE---------VETRSRAQTPS-GS 188
           RR  +++  E       L    L   L +  ++             + TR +  T    +
Sbjct: 235 RRLLKSKPYEN-----CL----LV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 189 TVGVKTRLKDVSNALTT--SKELL-KIINRMWGQEDRPSSSMS---LVSALHAELER--- 239
                  L   S  LT    K LL K ++     +D P   ++      ++ AE  R   
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDC--RPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 240 ARLQ-VNQLIQEQRSDQSEISY-------LMKCFAE----EKAA----------WKNKER 277
           A       +  ++ +   E S          K F        +A          W +  +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 278 EVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA--RVV 335
             V            V  KL +   SL +K  KE   +  S+   +K     + A  R +
Sbjct: 402 SDVM----------VVVNKLHKY--SLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 336 IEQVCDELARDIND 349
           ++        D +D
Sbjct: 450 VDHYNIPKTFDSDD 463

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 37/233 (15%), Positives = 89/233 (38%), Gaps = 4/233 (1%)

Query: 192  VKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQ 251
            V+ R + + +A    + LL+        +       S++   H     AR+  ++ ++  
Sbjct: 831  VRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAI 890

Query: 252  RSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKE 311
               Q     +M   A+ +      E   VE   +   G      +L+R+ +  NK+  K 
Sbjct: 891  VYLQCCYRRMM---AKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY-KS 946

Query: 312  LAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKE 371
            L E  ++L         + R+ V   ++ +E A++  +    ++E   +    L + + E
Sbjct: 947  LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006

Query: 372  REMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRKR 424
            ++ I+      +   +  +SE K Q        ++L  ++   ++      ++
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEK 1059

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 36/242 (14%), Positives = 84/242 (34%), Gaps = 29/242 (11%)

Query: 191  GVKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELER--ARLQVNQLI 248
            G   R K           +++   R W        ++  +  L     R  A+ ++ +L 
Sbjct: 851  GYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLK 910

Query: 249  QEQRSDQSEISYLMKCFAEEKAAWKNKEREV---VEAAIESIAGELEVERKLRRRFESLN 305
             E RS +           +     +NK  ++   ++   +     LE    L   + +  
Sbjct: 911  IEARSVERYK--------KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTET 962

Query: 306  KKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIAL 365
            +KL  ++   +           +E+ A+    +V   L  +I   + E+ + + E     
Sbjct: 963  EKLRSDVERLRM----------SEEEAKNATNRV-LSLQEEIAKLRKELHQTQTEKKTIE 1011

Query: 366  EEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQL-EAFSRNQKGKRKR 424
            E  +K +   +   ++ E + Q  L + +   EE N  +     ++ E   +    + K+
Sbjct: 1012 EWADKYKH--ETEQLVSELKEQNTLLKTE--KEELNRRIHDQAKEITETMEKKLVEETKQ 1067

Query: 425  TQ 426
             +
Sbjct: 1068 LE 1069

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	433
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	97.15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.39
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	96.21
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	94.62
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	93.09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	93.01
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.73
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	92.55
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	92.3
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	91.93
2hg7_A	110	Phage-like element PBSX protein XKDW; dimer, GFT s	90.53
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	89.96
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	88.36
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	82.57
2w6b_A	56	RHO guanine nucleotide exchange factor 7; X-RAY cr	81.74

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=97.15  E-value=0.013  Score=53.04  Aligned_cols=131  Identities=15%  Similarity=0.258  Sum_probs=101.1

Q ss_pred             hHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHH
Q 013958          206 SKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIE  285 (433)
Q Consensus       206 S~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~  285 (433)
                      |+.|+..+|+.=.|+|.       +..++.+|..++.+|++|+..+.    +++.+.    .+        ..-+.+-+.
T Consensus         5 StKLI~Ain~qs~LeD~-------L~~~R~el~~~~~ri~~lE~~r~----~~~~l~----~~--------~~~~~~e~~   61 (154)
T 2ocy_A            5 STQLIESVDKQSHLEEQ-------LNKSLKTIASQKAAIENYNQLKE----DYNTLK----RE--------LSDRDDEVK   61 (154)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTHHHHH----HHHHHH----TH--------HHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHH-------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----HH--------HhhhhHHHH
Confidence            68899999998777764       57888999999999999998764    233332    22        223566777


Q ss_pred             HHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 013958          286 SIAGELEVERKLRRRFESLNKKLGKELAETKHS-LLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKR  359 (433)
Q Consensus       286 slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s-~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKr  359 (433)
                      .+.++|..|+..|..+|....++-.||-|.-.| |..|=+=.-.+|+.+..+|.=-+.|-..+.|-+.-++.|-.
T Consensus        62 ~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~  136 (154)
T 2ocy_A           62 RLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTL  136 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999997655 55555556678999999988888888887776665555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.39  E-value=0.049  Score=55.19  Aligned_cols=125  Identities=14%  Similarity=0.128  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHH
Q 013958          233 LHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKEL  312 (433)
Q Consensus       233 L~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~EL  312 (433)
                      |..|+.+-+..|+.|+.+.......+..+-..+.+.+..+.....+. ..    .++.|+   +..++.+..+.++..++
T Consensus       454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~-~~----~~~~l~---~~~~~~~~~~~~~~~~~  525 (597)
T 3oja_B          454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGL-AR----SSDNLN---KVFTHLKERQAFKLRET  525 (597)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSS-SC----HHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccc-CC----HHHHHH---HHHHHHHhhhhhhHHHH
Confidence            44555555666666666555544444444444444333322000000 00    001111   11223333555555666


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHH
Q 013958          313 AETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIAL  365 (433)
Q Consensus       313 aE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~  365 (433)
                      ...+.++..-.++|+..++.++.||..+++.-+.+.+.+.|+..++.+.....
T Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~  578 (597)
T 3oja_B          526 QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE  578 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666777777777777777777776666666666666665544443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.21  E-value=0.065  Score=45.38  Aligned_cols=91  Identities=19%  Similarity=0.306  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHH
Q 013958          233 LHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKEL  312 (433)
Q Consensus       233 L~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~EL  312 (433)
                      |..+|+.+|.+|.+|..+...                          +.+-+..|..+|..|+..|..+|.-..++-.||
T Consensus         3 ~~~~~e~lre~l~~le~~~~~--------------------------~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El   56 (97)
T 2eqb_B            3 LGSNYNQLKEDYNTLKRELSD--------------------------RDDEVKRLREDIAKENELRTKAEEEADKLNKEV   56 (97)
T ss_dssp             --CCHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHh--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445688888888888866543                          334445588889999999999999999999999


Q ss_pred             HHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013958          313 AETKHS-LLKAVKDLDTEKRARVVIEQVCDELARDIND  349 (433)
Q Consensus       313 aE~K~s-~~~alkelE~ERkaRellE~vCdELAk~I~e  349 (433)
                      -+.-.| |..|=+=.-.+|+.+..+|.--+.|...|.|
T Consensus        57 EeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d   94 (97)
T 2eqb_B           57 EDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE   94 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            886655 4555555556677777777766666655544

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=94.62  E-value=2  Score=37.15  Aligned_cols=30  Identities=10%  Similarity=0.134  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 013958          231 SALHAELERARLQVNQLIQEQRSDQSEISY  260 (433)
Q Consensus       231 ~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~  260 (433)
                      .+|+.+++.....+.+|..+......+++.
T Consensus         9 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~   38 (284)
T 1c1g_A            9 QMLKLDKENALDRADEAEADKKAAEDRSKQ   38 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=93.09  E-value=0.017  Score=64.94  Aligned_cols=32  Identities=19%  Similarity=0.258  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 013958          230 VSALHAELERARLQVNQLIQEQRSDQSEISYL  261 (433)
Q Consensus       230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l  261 (433)
                      +..|+.+++..+..+.+|..+......+++.+
T Consensus       957 l~~L~~eleele~~l~~l~~e~~~le~~l~~l  988 (1184)
T 1i84_S          957 MLDLEEQLEEEEAARQKLQLEKVTADGKIKKM  988 (1184)
T ss_dssp             --------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555444444444433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=93.01  E-value=0.23  Score=55.99  Aligned_cols=19  Identities=21%  Similarity=0.270  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 013958          230 VSALHAELERARLQVNQLI  248 (433)
Q Consensus       230 v~aL~~EL~~Ar~~I~eL~  248 (433)
                      +..|+.||...+..+..+.
T Consensus       859 l~~L~~eL~el~~~L~~le  877 (1184)
T 1i84_S          859 MQAKDEELQRTKERQQKAE  877 (1184)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3445555554444444433

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.73  E-value=2.4  Score=47.91  Aligned_cols=130  Identities=17%  Similarity=0.231  Sum_probs=50.0

Q ss_pred             HHHHHhhhchHHHHHHHHHhHHHHHHhh------hhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHH
Q 013958          246 QLIQEQRSDQSEISYLMKCFAEEKAAWK------NKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSL  319 (433)
Q Consensus       246 eL~~E~~s~~~eie~l~KqlaEEk~~wK------~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~  319 (433)
                      +|......-..+|..|-.++.++...++      ....++...-+..|+.++++..+.-...+.+.    .++.+...-+
T Consensus       918 ~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~----~~v~~L~~e~  993 (1080)
T 2dfs_A          918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNAT----NRVLSLQEEI  993 (1080)
T ss_dssp             ---------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence            3333344455556666666655433332      11224455666677776666666543333222    2222222233


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHH-hHHHHHHhHhhh
Q 013958          320 LKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEK-EREMIQVADVLR  382 (433)
Q Consensus       320 ~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~ee-ER~MLqmAEvWR  382 (433)
                      ...-+++++..+..+.+|+-++++-.   +.+..|..|+.+-.+++..+++ |..++..++-+.
T Consensus       994 ~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~ 1054 (1080)
T 2dfs_A          994 AKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT 1054 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555555555666665542   4445555555555555554433 335555555544

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=92.55  E-value=0.56  Score=41.76  Aligned_cols=108  Identities=14%  Similarity=0.215  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHH
Q 013958          232 ALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKE  311 (433)
Q Consensus       232 aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~E  311 (433)
                      .++.+|.-.+++|++|+..+.    +.+.+.+.+            ..+..-+..+..+|..|+..|..+|.-+.++-.|
T Consensus        12 ~~r~~l~~~~~~~~~le~l~~----~l~~l~~~l------------~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E   75 (135)
T 2e7s_A           12 KSLKTIASQKAAIENYNQLKE----DYNTLKREL------------SDRDDEVKRLREDIAKENELRTKAEEEADKLNKE   75 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHT------------TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677778888888888665    233333332            1334445669999999999999999999999999


Q ss_pred             HHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 013958          312 LAETKHS-LLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVE  355 (433)
Q Consensus       312 LaE~K~s-~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve  355 (433)
                      |.+.-.| |..|=+=.-.+|+.+..+|.=-+.|-..++|-+.-++
T Consensus        76 lE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~  120 (135)
T 2e7s_A           76 VEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLD  120 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9997655 5556555666788888888877777777766544333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=92.30  E-value=5.1  Score=34.57  Aligned_cols=11  Identities=9%  Similarity=0.217  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHH
Q 013958          404 VDKLRSQLEAF  414 (433)
Q Consensus       404 ldkL~~elE~F  414 (433)
                      +.++..+++.+
T Consensus       267 ~~~~~~~~~~~  277 (284)
T 1c1g_A          267 YKAISEELDHA  277 (284)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            34444444443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.15  E-value=2.9  Score=47.18  Aligned_cols=81  Identities=14%  Similarity=0.135  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhHHH----HhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHH
Q 013958          278 EVVEAAIESIAGELEVERKLRRRFES----LNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSE  353 (433)
Q Consensus       278 eki~aai~slk~ELe~ERk~Rrr~E~----ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaE  353 (433)
                      .+....|..|...|+++.+....+..    +..++..|.++.    .+.+.+||...+...-+++...+|-.+|.+.+.+
T Consensus       924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L----~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~  999 (1080)
T 2dfs_A          924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL----RSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE  999 (1080)
T ss_dssp             ---------------------------CHHHHHHHHHHHHHH----HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666777777665444443332    334444444443    2333444444444444444445555555555555


Q ss_pred             HHHHHHHhH
Q 013958          354 VEELKRESA  362 (433)
Q Consensus       354 ve~lKres~  362 (433)
                      +..+..+..
T Consensus      1000 ~~~~~ke~~ 1008 (1080)
T 2dfs_A         1000 LHQTQTEKK 1008 (1080)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555544433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=91.93  E-value=3.8  Score=41.46  Aligned_cols=65  Identities=9%  Similarity=0.156  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhh----hHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013958          277 REVVEAAIESIAGELEVERKLRR----RFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCD  341 (433)
Q Consensus       277 ~eki~aai~slk~ELe~ERk~Rr----r~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCd  341 (433)
                      .....+.++.++.+++..+..-+    .++....+|.+++..++.-......++.+.+++-.-..+.++
T Consensus       472 ~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (597)
T 3oja_B          472 QIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETE  540 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchh
Confidence            34456677777777776655433    222333556666665555555555555554444433333333

>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1

Probab=90.53  E-value=0.049  Score=46.54  Aligned_cols=39  Identities=46%  Similarity=0.663  Sum_probs=0.0

Q ss_pred             HHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHH
Q 013958          283 AIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLK  321 (433)
Q Consensus       283 ai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~  321 (433)
                      -|+.+..||..|+=+|+++|.+|.-|++||+.+|.++..
T Consensus        64 q~~~laqels~eklarkqleeln~~Lg~Els~iKl~lL~  102 (110)
T 2hg7_A           64 QVELLAQELSQEKLARKQLEELNKTLGNELSDIKLSLLS  102 (110)
T ss_dssp             ---------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366778888889999999999999999999999987643

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=89.96  E-value=5.1  Score=33.03  Aligned_cols=75  Identities=21%  Similarity=0.276  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhh------HHHHHHHHHHHHHHHhHHHHHHhh----
Q 013958          230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNK------EREVVEAAIESIAGELEVERKLRR----  299 (433)
Q Consensus       230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~K------E~eki~aai~slk~ELe~ERk~Rr----  299 (433)
                      +.+|+.|.+.|..++.+++........    -..++.+|-.+.+.|      +.|++...+......|+...+.+-    
T Consensus        11 m~~lk~e~e~a~d~ae~~e~~~k~~e~----~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~   86 (101)
T 3u59_A           11 MQMLKLDKENAIDRAEQAEADKKQAED----RCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA   86 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999888776544322    222223332222221      356777777788888888888877    


Q ss_pred             hHHHHhHHH
Q 013958          300 RFESLNKKL  308 (433)
Q Consensus       300 r~E~ln~KL  308 (433)
                      .+.+||||+
T Consensus        87 evasLnRri   95 (101)
T 3u59_A           87 EVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            445566665

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=88.36  E-value=7.7  Score=32.19  Aligned_cols=74  Identities=18%  Similarity=0.227  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhch-------HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhh---
Q 013958          230 VSALHAELERARLQVNQLIQEQRSDQ-------SEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRR---  299 (433)
Q Consensus       230 v~aL~~EL~~Ar~~I~eL~~E~~s~~-------~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rr---  299 (433)
                      |.+|+.|.+.|..++.+++...+...       .+|..|-+++.-     =--+-|++...+......|+...+..-   
T Consensus        11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~-----lE~eld~~ee~L~ea~~kLee~ek~~~~aE   85 (101)
T 3u1c_A           11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRV-----TEDSRDQVLEELHKSEDSLLFAEENAAKAE   85 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999988888876544322       233344333210     001356777778888888888888877   


Q ss_pred             -hHHHHhHHH
Q 013958          300 -RFESLNKKL  308 (433)
Q Consensus       300 -r~E~ln~KL  308 (433)
                       .+.+||||+
T Consensus        86 ~ev~~L~Rri   95 (101)
T 3u1c_A           86 SEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence             555666665

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=82.57  E-value=31  Score=32.05  Aligned_cols=32  Identities=22%  Similarity=0.276  Sum_probs=15.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 013958          228 SLVSALHAELERARLQVNQLIQEQRSDQSEIS  259 (433)
Q Consensus       228 Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie  259 (433)
                      -|=..|..||+++..++++|.......+.+++
T Consensus        42 ELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e   73 (189)
T 2v71_A           42 ELEAELEAQLVQAEQRNRDLQADNQRLKYEVE   73 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555544443333333

>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}

Probab=81.74  E-value=4.3  Score=31.34  Aligned_cols=24  Identities=33%  Similarity=0.481  Sum_probs=19.3

Q ss_pred             HHHHhHHHHHHhhhHHHHhHHHHH
Q 013958          287 IAGELEVERKLRRRFESLNKKLGK  310 (433)
Q Consensus       287 lk~ELe~ERk~Rrr~E~ln~KL~~  310 (433)
                      |+.=||.|.++|+++|.+=+|+.+
T Consensus        29 m~k~lEeEqkARk~LE~~vrk~~k   52 (56)
T 2w6b_A           29 MKKSLEEEQRARKDLEKLVRKVLK   52 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555688899999999999888843

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00